Query 013184
Match_columns 448
No_of_seqs 671 out of 3585
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 05:46:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 7E-39 2.4E-43 305.4 39.5 262 146-430 50-315 (321)
2 1vyh_C Platelet-activating fac 100.0 6.4E-38 2.2E-42 309.0 39.9 269 137-430 113-405 (410)
3 1got_B GT-beta; complex (GTP-b 100.0 5.3E-37 1.8E-41 294.7 42.6 271 137-430 60-337 (340)
4 4gqb_B Methylosome protein 50; 100.0 4.9E-37 1.7E-41 295.3 37.7 284 135-430 33-325 (344)
5 2pbi_B Guanine nucleotide-bind 100.0 4.5E-36 1.5E-40 289.9 40.3 272 137-430 69-351 (354)
6 2ynn_A Coatomer subunit beta'; 100.0 7.9E-36 2.7E-40 281.9 39.8 266 137-427 18-294 (304)
7 1erj_A Transcriptional repress 100.0 3.3E-35 1.1E-39 287.9 41.3 286 136-430 68-383 (393)
8 3ow8_A WD repeat-containing pr 100.0 2.1E-35 7.2E-40 281.3 36.9 232 193-429 34-272 (321)
9 2ynn_A Coatomer subunit beta'; 100.0 2E-35 7E-40 279.1 35.9 231 193-429 15-252 (304)
10 3iz6_a 40S ribosomal protein R 100.0 2.6E-36 8.9E-41 294.4 29.9 274 136-430 70-369 (380)
11 1vyh_C Platelet-activating fac 100.0 2.4E-35 8.2E-40 290.6 35.6 230 193-429 110-362 (410)
12 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.2E-34 4.1E-39 278.9 38.7 276 135-430 19-329 (345)
13 4g56_B MGC81050 protein; prote 100.0 1.8E-35 6.1E-40 286.1 32.8 275 135-430 45-337 (357)
14 3frx_A Guanine nucleotide-bind 100.0 6E-34 2.1E-38 270.9 38.8 268 138-430 23-311 (319)
15 1nr0_A Actin interacting prote 100.0 4.6E-34 1.6E-38 295.8 40.0 268 138-430 24-349 (611)
16 2hes_X YDR267CP; beta-propelle 100.0 6.1E-34 2.1E-38 272.2 36.5 264 146-429 26-321 (330)
17 2xzm_R RACK1; ribosome, transl 100.0 2E-33 6.8E-38 270.1 39.9 263 143-430 38-334 (343)
18 1got_B GT-beta; complex (GTP-b 100.0 1.7E-33 5.7E-38 270.3 37.5 229 193-429 57-294 (340)
19 4ery_A WD repeat-containing pr 100.0 4.8E-33 1.6E-37 263.4 38.7 269 136-429 27-305 (312)
20 3frx_A Guanine nucleotide-bind 100.0 4E-33 1.4E-37 265.3 38.2 228 193-426 19-258 (319)
21 2hes_X YDR267CP; beta-propelle 100.0 2E-33 6.8E-38 268.7 36.0 234 193-430 16-274 (330)
22 2ymu_A WD-40 repeat protein; u 100.0 4.7E-33 1.6E-37 285.6 40.9 263 137-430 308-574 (577)
23 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.7E-33 5.7E-38 270.9 34.9 236 193-431 18-278 (345)
24 1gxr_A ESG1, transducin-like e 100.0 3.9E-32 1.3E-36 258.6 43.7 271 136-430 55-331 (337)
25 2pm7_B Protein transport prote 100.0 2.6E-33 8.9E-38 263.7 35.0 234 193-429 11-278 (297)
26 4gqb_B Methylosome protein 50; 100.0 2.9E-33 1E-37 269.0 33.2 238 135-396 85-333 (344)
27 1nr0_A Actin interacting prote 100.0 8.1E-33 2.8E-37 286.4 37.5 268 137-429 64-390 (611)
28 2xzm_R RACK1; ribosome, transl 100.0 3.3E-32 1.1E-36 261.5 38.4 229 193-428 23-277 (343)
29 2pm9_A Protein WEB1, protein t 100.0 1.5E-33 5.3E-38 276.9 28.2 278 134-430 69-408 (416)
30 4h5i_A Guanine nucleotide-exch 100.0 2.5E-32 8.4E-37 264.8 36.2 278 135-431 17-338 (365)
31 2pbi_B Guanine nucleotide-bind 100.0 3.9E-32 1.3E-36 262.3 36.6 230 193-429 66-308 (354)
32 1sq9_A Antiviral protein SKI8; 100.0 1E-32 3.5E-37 269.5 32.6 264 145-429 27-388 (397)
33 2ymu_A WD-40 repeat protein; u 100.0 1.1E-31 3.8E-36 275.4 40.3 262 137-429 267-532 (577)
34 2pm9_A Protein WEB1, protein t 100.0 4.5E-33 1.6E-37 273.5 28.6 261 151-429 43-330 (416)
35 1k8k_C P40, ARP2/3 complex 41 100.0 7.2E-32 2.5E-36 260.7 36.3 271 136-428 12-353 (372)
36 4ery_A WD repeat-containing pr 100.0 9.2E-32 3.1E-36 254.5 36.0 230 193-429 25-261 (312)
37 3bg1_A Protein SEC13 homolog; 100.0 6.1E-33 2.1E-37 263.6 27.6 235 193-430 15-287 (316)
38 4gga_A P55CDC, cell division c 100.0 3.4E-31 1.2E-35 261.7 40.4 267 137-430 110-389 (420)
39 3i2n_A WD repeat-containing pr 100.0 4.7E-32 1.6E-36 260.4 32.4 271 136-428 22-345 (357)
40 3zwl_B Eukaryotic translation 100.0 6.5E-31 2.2E-35 253.1 40.3 266 137-429 37-339 (369)
41 3ei3_B DNA damage-binding prot 100.0 1E-31 3.4E-36 261.7 34.8 267 136-428 77-374 (383)
42 3iz6_a 40S ribosomal protein R 100.0 1.1E-32 3.9E-37 268.7 27.9 243 165-429 56-322 (380)
43 4g56_B MGC81050 protein; prote 100.0 1.1E-32 3.7E-37 266.5 27.3 243 135-400 97-349 (357)
44 3dm0_A Maltose-binding peripla 100.0 1.8E-31 6.3E-36 280.4 38.9 265 140-429 390-686 (694)
45 3k26_A Polycomb protein EED; W 100.0 2.6E-32 9E-37 262.8 28.7 260 150-429 41-359 (366)
46 4aow_A Guanine nucleotide-bind 100.0 2E-30 6.8E-35 247.4 41.1 267 138-429 44-330 (340)
47 1erj_A Transcriptional repress 100.0 8.7E-31 3E-35 256.5 38.3 229 193-429 66-334 (393)
48 1r5m_A SIR4-interacting protei 100.0 1.9E-31 6.7E-36 261.9 33.1 269 134-430 110-419 (425)
49 1gxr_A ESG1, transducin-like e 100.0 6.8E-31 2.3E-35 250.0 35.8 266 138-428 15-288 (337)
50 4aez_A CDC20, WD repeat-contai 100.0 1.8E-30 6.3E-35 254.7 38.9 259 144-429 104-373 (401)
51 3vl1_A 26S proteasome regulato 100.0 4.5E-32 1.5E-36 267.1 26.5 268 137-429 61-358 (420)
52 3dwl_C Actin-related protein 2 100.0 2.2E-32 7.6E-37 265.5 23.7 237 135-393 14-280 (377)
53 4ggc_A P55CDC, cell division c 100.0 2.7E-30 9.4E-35 244.1 37.0 266 138-430 31-309 (318)
54 3odt_A Protein DOA1; ubiquitin 100.0 2.8E-30 9.7E-35 243.2 36.9 257 142-429 27-289 (313)
55 1r5m_A SIR4-interacting protei 100.0 1.5E-30 5.2E-35 255.5 36.2 274 136-429 49-354 (425)
56 4e54_B DNA damage-binding prot 100.0 8E-32 2.7E-36 267.4 26.6 267 137-428 124-422 (435)
57 1yfq_A Cell cycle arrest prote 100.0 7.9E-31 2.7E-35 250.6 32.4 265 136-428 15-315 (342)
58 3f3f_A Nucleoporin SEH1; struc 100.0 1.9E-30 6.6E-35 247.2 34.5 249 193-445 13-345 (351)
59 3dwl_C Actin-related protein 2 100.0 9.6E-33 3.3E-37 268.0 18.6 230 193-427 13-273 (377)
60 3jrp_A Fusion protein of prote 100.0 1.6E-30 5.3E-35 251.6 33.4 233 193-429 13-280 (379)
61 3dw8_B Serine/threonine-protei 100.0 3.2E-30 1.1E-34 255.8 36.0 282 136-427 32-438 (447)
62 2aq5_A Coronin-1A; WD40 repeat 100.0 5.4E-31 1.9E-35 258.5 29.4 255 151-423 55-331 (402)
63 3zwl_B Eukaryotic translation 100.0 1.1E-29 3.7E-34 244.6 38.0 243 163-428 20-282 (369)
64 3vl1_A 26S proteasome regulato 100.0 4.2E-30 1.4E-34 252.9 35.8 263 140-427 105-410 (420)
65 3gre_A Serine/threonine-protei 100.0 3.5E-31 1.2E-35 262.4 27.8 276 135-430 66-434 (437)
66 2j04_B YDR362CP, TAU91; beta p 100.0 7.6E-32 2.6E-36 272.6 23.0 266 151-438 181-518 (524)
67 3dm0_A Maltose-binding peripla 100.0 5.6E-30 1.9E-34 269.1 38.0 227 193-424 384-621 (694)
68 1k8k_C P40, ARP2/3 complex 41 100.0 3.7E-30 1.3E-34 248.7 33.2 233 192-429 9-267 (372)
69 4a11_B DNA excision repair pro 100.0 1.5E-29 5E-34 247.3 37.7 235 193-429 45-358 (408)
70 2pm7_B Protein transport prote 100.0 4.8E-30 1.6E-34 241.4 32.4 239 137-394 14-285 (297)
71 3mmy_A MRNA export factor; mRN 100.0 4.6E-30 1.6E-34 247.1 32.6 236 193-432 41-342 (368)
72 3v7d_B Cell division control p 100.0 3.5E-29 1.2E-33 250.0 39.0 256 143-427 131-412 (464)
73 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.1E-29 2.1E-33 247.2 39.7 253 144-429 169-431 (445)
74 2j04_B YDR362CP, TAU91; beta p 100.0 4.3E-31 1.5E-35 267.0 23.8 227 200-430 172-422 (524)
75 3lrv_A PRE-mRNA-splicing facto 100.0 3.5E-30 1.2E-34 247.4 28.9 261 145-435 49-332 (343)
76 1sq9_A Antiviral protein SKI8; 100.0 3.8E-30 1.3E-34 251.2 28.6 231 193-428 18-314 (397)
77 3bg1_A Protein SEC13 homolog; 100.0 2.4E-30 8.1E-35 245.7 26.3 238 137-393 18-292 (316)
78 3mkq_A Coatomer beta'-subunit; 100.0 3.4E-29 1.2E-33 267.3 37.5 267 136-427 17-293 (814)
79 1p22_A F-BOX/WD-repeat protein 100.0 2.4E-29 8.2E-34 249.5 33.1 253 143-430 142-408 (435)
80 4e54_B DNA damage-binding prot 100.0 4.3E-30 1.5E-34 254.9 27.0 229 193-425 121-364 (435)
81 3ei3_B DNA damage-binding prot 100.0 6.5E-29 2.2E-33 241.8 33.9 207 193-404 75-292 (383)
82 3dw8_B Serine/threonine-protei 100.0 1.2E-29 4.1E-34 251.6 29.1 233 192-429 29-366 (447)
83 4aow_A Guanine nucleotide-bind 100.0 6.2E-28 2.1E-32 230.1 39.8 251 156-428 19-278 (340)
84 2xyi_A Probable histone-bindin 100.0 2E-29 6.8E-34 249.8 29.3 233 193-428 130-402 (430)
85 3v7d_B Cell division control p 100.0 4.6E-28 1.6E-32 241.9 38.6 260 138-428 168-454 (464)
86 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.5E-28 2.2E-32 239.7 38.4 252 143-429 128-384 (445)
87 4gq1_A NUP37; propeller, trans 100.0 1.4E-29 4.8E-34 247.9 25.4 227 200-427 100-381 (393)
88 3k26_A Polycomb protein EED; W 100.0 4.1E-29 1.4E-33 240.5 28.1 232 193-429 20-311 (366)
89 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.2E-28 2.5E-32 240.0 37.7 223 193-423 104-371 (450)
90 3gre_A Serine/threonine-protei 100.0 2.6E-29 9E-34 248.9 26.8 231 193-429 65-352 (437)
91 4aez_A CDC20, WD repeat-contai 100.0 4.4E-28 1.5E-32 237.7 34.7 227 193-428 95-328 (401)
92 3mkq_A Coatomer beta'-subunit; 100.0 9.4E-29 3.2E-33 263.9 32.4 230 193-429 15-252 (814)
93 3jro_A Fusion protein of prote 100.0 4.8E-29 1.7E-33 264.1 29.7 233 193-429 11-278 (753)
94 1pgu_A Actin interacting prote 100.0 1.1E-27 3.7E-32 247.1 38.9 271 134-429 20-321 (615)
95 3sfz_A APAF-1, apoptotic pepti 100.0 3.1E-28 1.1E-32 271.7 37.4 233 137-393 620-912 (1249)
96 1yfq_A Cell cycle arrest prote 100.0 1.7E-28 5.6E-33 234.5 30.3 231 193-429 13-275 (342)
97 3lrv_A PRE-mRNA-splicing facto 100.0 4.1E-29 1.4E-33 239.9 26.2 222 200-435 47-290 (343)
98 3sfz_A APAF-1, apoptotic pepti 100.0 4.5E-28 1.5E-32 270.4 36.8 231 193-430 617-907 (1249)
99 3jrp_A Fusion protein of prote 100.0 4.7E-28 1.6E-32 234.1 32.1 240 136-395 15-288 (379)
100 3f3f_A Nucleoporin SEH1; struc 100.0 7.2E-28 2.4E-32 229.3 32.8 247 136-401 15-344 (351)
101 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-27 4.2E-32 225.1 33.4 221 193-428 20-247 (313)
102 2aq5_A Coronin-1A; WD40 repeat 100.0 3.1E-28 1.1E-32 238.8 29.8 223 204-429 50-292 (402)
103 3i2n_A WD repeat-containing pr 100.0 1.6E-28 5.5E-33 235.6 26.4 232 193-430 20-285 (357)
104 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.3E-27 4.3E-32 238.2 33.2 188 236-427 104-330 (450)
105 1p22_A F-BOX/WD-repeat protein 100.0 1.8E-27 6E-32 236.0 33.9 221 193-430 135-359 (435)
106 3vu4_A KMHSV2; beta-propeller 100.0 2E-27 6.9E-32 229.3 32.8 264 136-432 23-332 (355)
107 2oaj_A Protein SNI1; WD40 repe 100.0 9.8E-28 3.4E-32 258.1 32.8 150 280-430 437-655 (902)
108 4a11_B DNA excision repair pro 100.0 2.9E-27 1E-31 230.9 32.4 258 136-402 47-373 (408)
109 4gga_A P55CDC, cell division c 100.0 7.9E-27 2.7E-31 230.3 35.6 254 135-413 150-414 (420)
110 1pgu_A Actin interacting prote 100.0 3E-27 1E-31 243.7 33.9 264 135-428 67-358 (615)
111 2w18_A PALB2, fancn, partner a 100.0 1.6E-27 5.6E-32 222.8 28.4 252 146-430 56-351 (356)
112 4h5i_A Guanine nucleotide-exch 100.0 2.4E-27 8.1E-32 229.8 29.7 194 194-396 136-345 (365)
113 2oaj_A Protein SNI1; WD40 repe 100.0 1.8E-27 6.1E-32 256.1 31.3 225 193-427 19-298 (902)
114 3bws_A Protein LP49; two-domai 100.0 6.3E-26 2.1E-30 224.1 37.2 266 137-428 127-424 (433)
115 2xyi_A Probable histone-bindin 100.0 4.5E-27 1.5E-31 232.9 28.6 241 137-395 133-411 (430)
116 3jro_A Fusion protein of prote 100.0 1.2E-27 4E-32 253.5 25.7 239 136-394 13-285 (753)
117 1l0q_A Surface layer protein; 100.0 2.4E-25 8.3E-30 216.8 38.5 248 151-427 10-266 (391)
118 2j04_A TAU60, YPL007P, hypothe 100.0 1.9E-27 6.4E-32 236.2 23.4 229 193-435 17-295 (588)
119 3vu4_A KMHSV2; beta-propeller 100.0 1.6E-26 5.5E-31 223.0 28.8 221 193-429 21-264 (355)
120 3mmy_A MRNA export factor; mRN 99.9 4.9E-26 1.7E-30 218.9 25.7 236 136-393 43-345 (368)
121 4ggc_A P55CDC, cell division c 99.9 8.1E-25 2.8E-29 206.4 33.3 235 136-395 71-316 (318)
122 2j04_A TAU60, YPL007P, hypothe 99.9 3E-26 1E-30 227.5 24.1 219 191-425 85-350 (588)
123 2w18_A PALB2, fancn, partner a 99.9 8.2E-26 2.8E-30 211.4 25.0 188 200-392 144-355 (356)
124 4gq1_A NUP37; propeller, trans 99.9 1.6E-25 5.5E-30 219.1 24.5 219 151-392 109-387 (393)
125 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.2E-24 1.4E-28 210.5 31.2 224 201-436 143-384 (415)
126 1l0q_A Surface layer protein; 99.9 4.3E-23 1.5E-27 200.9 37.5 245 135-407 34-288 (391)
127 3bws_A Protein LP49; two-domai 99.9 3.4E-23 1.2E-27 204.5 33.6 226 195-427 126-366 (433)
128 2ojh_A Uncharacterized protein 99.9 1.1E-22 3.7E-27 189.0 30.0 250 152-428 21-294 (297)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.6E-22 1.2E-26 196.6 34.8 236 153-418 159-410 (415)
130 3vgz_A Uncharacterized protein 99.9 2.9E-21 9.8E-26 184.9 38.6 268 136-428 44-336 (353)
131 1ri6_A Putative isomerase YBHE 99.9 3.4E-21 1.2E-25 183.3 33.8 259 146-426 6-297 (343)
132 1nir_A Nitrite reductase; hemo 99.9 4E-21 1.4E-25 195.4 33.8 268 137-426 183-499 (543)
133 3u4y_A Uncharacterized protein 99.9 2.2E-20 7.5E-25 177.4 36.0 264 139-428 4-295 (331)
134 2z3z_A Dipeptidyl aminopeptida 99.9 2.3E-20 7.9E-25 196.1 33.5 275 134-435 83-431 (706)
135 2ecf_A Dipeptidyl peptidase IV 99.9 9.5E-21 3.2E-25 200.1 28.8 289 135-436 39-412 (741)
136 1xfd_A DIP, dipeptidyl aminope 99.9 1.6E-20 5.4E-25 197.8 27.3 278 136-436 20-392 (723)
137 1pby_B Quinohemoprotein amine 99.9 6.8E-20 2.3E-24 173.9 28.6 215 202-427 2-301 (337)
138 1nir_A Nitrite reductase; hemo 99.9 1.5E-19 5.1E-24 183.8 32.9 252 145-424 149-439 (543)
139 2ojh_A Uncharacterized protein 99.9 2.2E-20 7.4E-25 173.4 24.4 213 206-428 17-239 (297)
140 3hfq_A Uncharacterized protein 99.9 4.5E-19 1.5E-23 169.8 33.2 234 197-434 47-314 (347)
141 2oit_A Nucleoporin 214KDA; NH2 99.9 1.6E-20 5.3E-25 185.9 23.5 234 195-434 42-330 (434)
142 2z3z_A Dipeptidyl aminopeptida 99.9 6.3E-20 2.2E-24 192.8 27.9 283 138-436 31-388 (706)
143 2oit_A Nucleoporin 214KDA; NH2 99.9 5.9E-21 2E-25 188.9 18.8 187 237-429 39-265 (434)
144 1ri6_A Putative isomerase YBHE 99.9 1.1E-18 3.7E-23 166.0 33.3 262 135-418 40-335 (343)
145 3o4h_A Acylamino-acid-releasin 99.9 5.4E-20 1.9E-24 189.0 25.5 265 138-437 27-313 (582)
146 2ecf_A Dipeptidyl peptidase IV 99.9 1.2E-19 4.3E-24 191.5 28.4 265 135-428 111-447 (741)
147 3vgz_A Uncharacterized protein 99.9 7.8E-19 2.7E-23 167.9 31.3 223 194-425 43-291 (353)
148 1k32_A Tricorn protease; prote 99.8 4.5E-19 1.5E-23 194.4 30.1 223 194-428 249-494 (1045)
149 3scy_A Hypothetical bacterial 99.8 5.6E-18 1.9E-22 163.1 34.3 260 136-414 53-360 (361)
150 3u4y_A Uncharacterized protein 99.8 1.5E-18 5E-23 164.8 29.2 218 200-425 9-240 (331)
151 3scy_A Hypothetical bacterial 99.8 6.6E-18 2.3E-22 162.6 33.3 235 196-436 56-336 (361)
152 1jmx_B Amine dehydrogenase; ox 99.8 9.4E-19 3.2E-23 166.9 26.7 215 200-426 10-315 (349)
153 1xfd_A DIP, dipeptidyl aminope 99.8 1.1E-19 3.9E-24 191.3 19.9 221 194-423 19-323 (723)
154 1k32_A Tricorn protease; prote 99.8 2.8E-18 9.6E-23 188.0 31.6 262 135-426 298-628 (1045)
155 1pby_B Quinohemoprotein amine 99.8 1.6E-17 5.3E-22 157.5 32.4 230 151-404 9-320 (337)
156 3hfq_A Uncharacterized protein 99.8 2.8E-17 9.6E-22 157.2 32.1 243 136-398 43-323 (347)
157 3o4h_A Acylamino-acid-releasin 99.8 6E-19 2E-23 181.2 20.9 224 192-429 22-269 (582)
158 1jmx_B Amine dehydrogenase; ox 99.8 2.6E-17 9E-22 156.9 29.9 231 144-403 10-334 (349)
159 3pe7_A Oligogalacturonate lyas 99.8 1.3E-17 4.4E-22 161.9 27.4 278 137-437 40-382 (388)
160 1jof_A Carboxy-CIS,CIS-muconat 99.8 1E-16 3.5E-21 154.8 31.0 229 194-427 42-331 (365)
161 1z68_A Fibroblast activation p 99.8 2.6E-18 9.1E-23 180.8 21.4 275 136-436 19-390 (719)
162 1z68_A Fibroblast activation p 99.8 1.4E-18 4.9E-23 182.9 16.6 215 200-423 26-329 (719)
163 4a5s_A Dipeptidyl peptidase 4 99.8 3.7E-17 1.3E-21 172.7 24.5 237 194-436 19-350 (740)
164 3c5m_A Oligogalacturonate lyas 99.7 2.2E-16 7.4E-21 153.3 24.1 277 136-436 39-381 (396)
165 1jof_A Carboxy-CIS,CIS-muconat 99.7 2E-15 7E-20 145.6 29.2 220 203-427 4-276 (365)
166 1q7f_A NHL, brain tumor CG1071 99.7 1.3E-14 4.3E-19 134.8 29.9 224 193-427 31-271 (286)
167 4a5s_A Dipeptidyl peptidase 4 99.7 6.7E-15 2.3E-19 155.4 30.9 267 135-426 19-383 (740)
168 2oiz_A Aromatic amine dehydrog 99.7 1.5E-14 5E-19 139.4 30.7 242 152-418 30-360 (361)
169 3fvz_A Peptidyl-glycine alpha- 99.7 4.9E-15 1.7E-19 140.9 26.7 230 193-430 25-316 (329)
170 3azo_A Aminopeptidase; POP fam 99.7 4.1E-15 1.4E-19 154.9 25.8 238 193-436 25-322 (662)
171 3e5z_A Putative gluconolactona 99.7 8.1E-14 2.8E-18 130.1 28.4 224 195-436 31-283 (296)
172 2dg1_A DRP35, lactonase; beta 99.7 5.5E-13 1.9E-17 126.4 34.4 236 194-438 47-315 (333)
173 1q7f_A NHL, brain tumor CG1071 99.6 1.2E-12 4E-17 121.4 33.9 241 131-395 27-281 (286)
174 2gop_A Trilobed protease; beta 99.6 1.8E-13 6.2E-18 130.4 29.1 238 152-436 42-330 (347)
175 2gop_A Trilobed protease; beta 99.6 7.2E-14 2.5E-18 133.2 25.4 217 193-433 16-288 (347)
176 3no2_A Uncharacterized protein 99.6 1.7E-13 5.9E-18 126.7 26.5 227 200-439 4-253 (276)
177 3fvz_A Peptidyl-glycine alpha- 99.6 2.2E-13 7.6E-18 129.3 27.7 219 153-394 69-322 (329)
178 3dsm_A Uncharacterized protein 99.6 8.1E-13 2.8E-17 125.4 31.4 248 152-424 16-285 (328)
179 3azo_A Aminopeptidase; POP fam 99.6 1.2E-13 4.2E-18 143.7 26.0 212 199-421 88-350 (662)
180 3pe7_A Oligogalacturonate lyas 99.6 2.8E-13 9.5E-18 131.1 26.7 180 244-426 43-258 (388)
181 2xdw_A Prolyl endopeptidase; a 99.6 2.7E-12 9.3E-17 134.8 35.1 236 193-436 126-411 (710)
182 1rwi_B Serine/threonine-protei 99.6 4E-13 1.4E-17 123.2 24.8 227 193-427 25-255 (270)
183 2oiz_A Aromatic amine dehydrog 99.6 6.2E-13 2.1E-17 128.0 24.7 205 209-425 29-324 (361)
184 2z2n_A Virginiamycin B lyase; 99.6 7.4E-11 2.5E-15 109.4 36.5 263 140-436 21-292 (299)
185 3dsm_A Uncharacterized protein 99.5 8.2E-12 2.8E-16 118.5 29.9 242 143-414 52-320 (328)
186 2xdw_A Prolyl endopeptidase; a 99.5 2.3E-12 7.9E-17 135.3 28.7 187 241-428 129-358 (710)
187 1qks_A Cytochrome CD1 nitrite 99.5 4E-11 1.4E-15 121.7 36.8 258 146-427 168-524 (567)
188 3c5m_A Oligogalacturonate lyas 99.5 1.4E-13 4.8E-18 133.3 17.7 217 198-426 44-303 (396)
189 3e5z_A Putative gluconolactona 99.5 6.4E-12 2.2E-16 117.1 28.0 231 137-397 32-289 (296)
190 1xip_A Nucleoporin NUP159; bet 99.5 6.7E-13 2.3E-17 127.6 18.7 171 236-423 39-231 (388)
191 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 2.4E-11 8.2E-16 113.8 29.1 236 195-438 21-298 (314)
192 2dg1_A DRP35, lactonase; beta 99.5 5E-12 1.7E-16 119.7 24.4 222 194-426 8-253 (333)
193 1rwi_B Serine/threonine-protei 99.5 1.3E-11 4.5E-16 113.0 26.0 233 137-396 28-266 (270)
194 3no2_A Uncharacterized protein 99.5 3.6E-12 1.2E-16 117.8 21.6 170 250-426 6-185 (276)
195 2bkl_A Prolyl endopeptidase; m 99.5 1.1E-11 3.9E-16 129.7 26.9 234 193-436 122-394 (695)
196 3g4e_A Regucalcin; six bladed 99.5 4.3E-11 1.5E-15 111.7 27.9 226 200-436 24-283 (297)
197 2z2n_A Virginiamycin B lyase; 99.5 1.9E-10 6.5E-15 106.6 31.4 218 193-422 16-241 (299)
198 2qc5_A Streptogramin B lactona 99.5 6.6E-10 2.3E-14 102.9 34.4 256 140-425 26-290 (300)
199 1qks_A Cytochrome CD1 nitrite 99.4 1.8E-10 6.3E-15 116.9 32.1 215 200-424 166-407 (567)
200 3hrp_A Uncharacterized protein 99.4 1E-10 3.5E-15 114.3 26.7 226 193-430 132-404 (409)
201 2bkl_A Prolyl endopeptidase; m 99.4 5.5E-11 1.9E-15 124.5 25.9 191 241-436 125-348 (695)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 5.8E-10 2E-14 104.3 30.0 235 136-394 21-299 (314)
203 2mad_H Methylamine dehydrogena 99.4 2.3E-09 7.8E-14 103.3 34.7 258 142-425 30-338 (373)
204 1yr2_A Prolyl oligopeptidase; 99.4 1.6E-10 5.5E-15 121.9 27.9 236 195-436 112-392 (741)
205 2ghs_A AGR_C_1268P; regucalcin 99.4 7.5E-10 2.6E-14 104.8 29.8 213 201-427 61-293 (326)
206 2qc5_A Streptogramin B lactona 99.4 1.5E-09 5.3E-14 100.4 31.3 220 193-423 21-247 (300)
207 1yr2_A Prolyl oligopeptidase; 99.4 5.5E-10 1.9E-14 117.8 31.6 234 193-436 164-438 (741)
208 1xip_A Nucleoporin NUP159; bet 99.4 1.9E-11 6.5E-16 117.5 18.2 172 193-381 39-231 (388)
209 3g4e_A Regucalcin; six bladed 99.3 3.1E-09 1.1E-13 99.0 31.1 220 137-383 17-261 (297)
210 3sjl_D Methylamine dehydrogena 99.3 1.8E-09 6.3E-14 103.3 28.7 263 139-425 39-351 (386)
211 3dr2_A Exported gluconolactona 99.3 8.4E-10 2.9E-14 103.3 25.6 211 200-426 55-297 (305)
212 2mad_H Methylamine dehydrogena 99.3 7.2E-09 2.5E-13 99.8 32.6 252 137-411 70-367 (373)
213 2qe8_A Uncharacterized protein 99.3 1.1E-09 3.8E-14 104.3 25.0 226 194-426 19-311 (343)
214 2ghs_A AGR_C_1268P; regucalcin 99.3 1.6E-08 5.4E-13 95.6 32.3 219 137-384 53-292 (326)
215 3c75_H MADH, methylamine dehyd 99.3 1.2E-09 4.2E-14 106.3 24.8 260 142-425 82-390 (426)
216 3sjl_D Methylamine dehydrogena 99.2 2.4E-09 8.3E-14 102.4 23.9 257 137-416 82-384 (386)
217 3hrp_A Uncharacterized protein 99.2 2.3E-08 7.9E-13 97.6 30.7 229 139-392 136-408 (409)
218 2ece_A 462AA long hypothetical 99.2 7.7E-09 2.6E-13 99.8 25.2 222 200-424 94-399 (462)
219 2hz6_A Endoplasmic reticulum t 99.2 1.5E-11 5.3E-16 118.6 6.4 204 198-418 6-216 (369)
220 3dr2_A Exported gluconolactona 99.2 7.4E-09 2.5E-13 96.8 24.3 224 137-391 49-303 (305)
221 3iuj_A Prolyl endopeptidase; h 99.2 4.2E-09 1.5E-13 110.1 24.5 190 243-436 135-356 (693)
222 3iuj_A Prolyl endopeptidase; h 99.1 9.6E-09 3.3E-13 107.4 24.2 232 193-436 130-402 (693)
223 2iwa_A Glutamine cyclotransfer 99.1 4.1E-08 1.4E-12 89.1 24.7 184 236-426 22-226 (266)
224 3c75_H MADH, methylamine dehyd 99.1 8.2E-09 2.8E-13 100.5 21.5 258 137-416 122-423 (426)
225 3nol_A Glutamine cyclotransfer 99.1 2.7E-08 9.2E-13 89.3 22.9 189 229-426 37-245 (262)
226 1kb0_A Quinohemoprotein alcoho 99.1 2.9E-08 9.9E-13 103.2 26.7 263 143-423 127-537 (677)
227 1kb0_A Quinohemoprotein alcoho 99.1 4.1E-08 1.4E-12 102.1 27.1 270 144-427 77-498 (677)
228 1npe_A Nidogen, entactin; glyc 99.1 1.1E-06 3.7E-11 80.2 32.7 216 193-418 37-263 (267)
229 1yiq_A Quinohemoprotein alcoho 99.0 1.1E-07 3.7E-12 99.1 28.5 262 144-422 121-534 (689)
230 3q7m_A Lipoprotein YFGL, BAMB; 99.0 7.3E-07 2.5E-11 85.6 31.8 258 144-426 53-327 (376)
231 3mbr_X Glutamine cyclotransfer 99.0 1.8E-07 6.1E-12 83.2 25.1 189 228-425 14-223 (243)
232 3nok_A Glutaminyl cyclase; bet 99.0 5.1E-08 1.7E-12 87.5 20.9 186 229-424 49-253 (268)
233 1fwx_A Nitrous oxide reductase 99.0 1.9E-08 6.7E-13 100.3 20.1 222 200-425 100-407 (595)
234 3q7m_A Lipoprotein YFGL, BAMB; 99.0 5.1E-07 1.7E-11 86.7 29.7 254 143-428 102-370 (376)
235 2ece_A 462AA long hypothetical 99.0 2.7E-08 9.2E-13 96.0 19.9 187 246-436 93-349 (462)
236 1yiq_A Quinohemoprotein alcoho 99.0 3.9E-07 1.3E-11 94.9 29.9 270 144-427 70-496 (689)
237 3hxj_A Pyrrolo-quinoline quino 99.0 4.4E-08 1.5E-12 92.0 20.8 210 201-429 107-317 (330)
238 1mda_H Methylamine dehydrogena 99.0 1.5E-08 5.2E-13 96.9 17.2 173 251-425 34-333 (368)
239 2hz6_A Endoplasmic reticulum t 99.0 6.4E-11 2.2E-15 114.2 0.4 168 251-427 11-183 (369)
240 1mda_H Methylamine dehydrogena 98.9 3.1E-08 1.1E-12 94.7 18.1 249 137-415 69-366 (368)
241 1fwx_A Nitrous oxide reductase 98.9 2.3E-07 8E-12 92.6 22.8 175 247-424 100-348 (595)
242 2iwa_A Glutamine cyclotransfer 98.9 9.7E-07 3.3E-11 80.0 23.6 192 195-395 24-238 (266)
243 3nol_A Glutamine cyclotransfer 98.8 1E-06 3.5E-11 79.0 21.5 181 194-384 45-245 (262)
244 3hxj_A Pyrrolo-quinoline quino 98.8 1.4E-07 4.7E-12 88.6 16.9 250 143-436 29-281 (330)
245 1npe_A Nidogen, entactin; glyc 98.8 1.8E-05 6.2E-10 71.9 30.2 216 203-426 3-227 (267)
246 2qe8_A Uncharacterized protein 98.8 3.2E-07 1.1E-11 87.2 18.2 196 193-391 68-318 (343)
247 3nok_A Glutaminyl cyclase; bet 98.8 1.9E-06 6.6E-11 77.2 21.7 179 194-383 57-254 (268)
248 3mbr_X Glutamine cyclotransfer 98.7 1.1E-05 3.7E-10 71.7 24.9 181 194-384 23-224 (243)
249 2ad6_A Methanol dehydrogenase 98.7 1.3E-05 4.4E-10 81.5 29.0 269 144-427 62-485 (571)
250 3v64_C Agrin; beta propeller, 98.7 7.5E-05 2.5E-09 70.9 32.7 245 143-413 43-294 (349)
251 3v65_B Low-density lipoprotein 98.7 6E-05 2.1E-09 72.6 32.0 251 138-414 81-338 (386)
252 4a2l_A BT_4663, two-component 98.7 6.2E-05 2.1E-09 79.8 34.2 258 142-422 271-559 (795)
253 2p4o_A Hypothetical protein; p 98.7 2.5E-05 8.5E-10 72.7 27.6 222 194-427 34-279 (306)
254 1kv9_A Type II quinohemoprotei 98.7 8.9E-06 3E-10 84.4 26.2 262 144-423 117-519 (668)
255 1kv9_A Type II quinohemoprotei 98.6 1.7E-05 5.7E-10 82.3 27.9 270 144-427 66-479 (668)
256 2ad6_A Methanol dehydrogenase 98.6 2E-05 6.8E-10 80.1 27.7 265 144-427 115-527 (571)
257 1ijq_A LDL receptor, low-densi 98.6 0.00048 1.6E-08 64.3 34.5 241 146-412 3-256 (316)
258 2fp8_A Strictosidine synthase; 98.6 3.8E-05 1.3E-09 71.9 26.1 230 196-436 23-310 (322)
259 4a2l_A BT_4663, two-component 98.5 0.00028 9.7E-09 74.7 34.8 256 143-422 224-514 (795)
260 2xe4_A Oligopeptidase B; hydro 98.5 1.2E-05 4.1E-10 84.6 22.8 190 242-436 179-397 (751)
261 2fp8_A Strictosidine synthase; 98.5 0.00013 4.6E-09 68.1 27.9 250 137-394 23-313 (322)
262 3sov_A LRP-6, low-density lipo 98.5 0.0004 1.4E-08 64.9 30.5 245 146-413 6-257 (318)
263 3qqz_A Putative uncharacterize 98.5 0.00013 4.4E-09 65.6 25.7 184 237-425 29-242 (255)
264 1w6s_A Methanol dehydrogenase 98.5 0.00011 3.9E-09 74.7 28.4 202 144-359 62-349 (599)
265 1flg_A Protein (quinoprotein e 98.5 0.00034 1.2E-08 71.1 31.4 205 144-359 68-362 (582)
266 1w6s_A Methanol dehydrogenase 98.4 0.00019 6.4E-09 73.1 28.9 160 259-420 278-530 (599)
267 3p5b_L Low density lipoprotein 98.4 0.0015 5E-08 63.2 36.1 247 144-413 83-339 (400)
268 1k3i_A Galactose oxidase precu 98.4 2.4E-05 8.3E-10 81.0 22.7 222 200-425 197-530 (656)
269 3v65_B Low-density lipoprotein 98.4 0.00048 1.7E-08 66.2 30.1 222 203-436 89-315 (386)
270 3v64_C Agrin; beta propeller, 98.4 0.00045 1.6E-08 65.4 29.4 214 211-436 53-272 (349)
271 3v9f_A Two-component system se 98.4 0.00076 2.6E-08 71.2 34.0 266 142-422 266-555 (781)
272 1flg_A Protein (quinoprotein e 98.4 0.00013 4.6E-09 74.1 26.7 161 259-421 291-544 (582)
273 3m0c_C LDL receptor, low-densi 98.4 0.0011 3.7E-08 69.7 33.4 244 145-412 396-650 (791)
274 3v9f_A Two-component system se 98.4 0.00069 2.4E-08 71.5 31.7 262 142-425 219-513 (781)
275 1ijq_A LDL receptor, low-densi 98.3 0.0003 1E-08 65.7 24.4 164 259-424 10-182 (316)
276 3amr_A 3-phytase; beta-propell 98.3 0.00039 1.3E-08 65.0 23.7 190 251-446 42-270 (355)
277 3tc9_A Hypothetical hydrolase; 98.2 0.0016 5.4E-08 63.6 28.6 223 195-426 140-419 (430)
278 3sov_A LRP-6, low-density lipo 98.2 0.0025 8.5E-08 59.4 28.7 218 210-437 12-236 (318)
279 3p5b_L Low density lipoprotein 98.2 0.0007 2.4E-08 65.4 25.3 172 251-424 85-264 (400)
280 2p4o_A Hypothetical protein; p 98.1 0.00048 1.7E-08 63.8 22.1 181 238-425 35-230 (306)
281 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0098 3.4E-07 60.9 33.1 230 145-400 7-243 (628)
282 2xe4_A Oligopeptidase B; hydro 98.1 0.00061 2.1E-08 71.6 24.4 189 195-392 179-398 (751)
283 4hw6_A Hypothetical protein, I 98.1 0.0039 1.3E-07 60.8 28.0 223 195-426 142-422 (433)
284 3tc9_A Hypothetical hydrolase; 98.0 0.00041 1.4E-08 67.7 20.3 146 280-427 138-291 (430)
285 3qqz_A Putative uncharacterize 98.0 0.0035 1.2E-07 56.2 24.4 191 193-392 28-251 (255)
286 3kya_A Putative phosphatase; s 98.0 0.003 1E-07 62.2 25.2 222 201-426 152-464 (496)
287 3m0c_C LDL receptor, low-densi 98.0 0.0097 3.3E-07 62.5 29.9 216 210-436 403-629 (791)
288 1n7d_A LDL receptor, low-densi 97.9 4.2E-05 1.4E-09 79.6 11.5 213 195-415 409-635 (699)
289 3amr_A 3-phytase; beta-propell 97.9 0.011 3.8E-07 55.1 26.3 150 210-360 98-272 (355)
290 2p9w_A MAL S 1 allergenic prot 97.9 0.0037 1.3E-07 57.9 22.3 184 237-424 15-252 (334)
291 4hw6_A Hypothetical protein, I 97.9 0.0012 4.2E-08 64.4 20.2 150 238-393 142-303 (433)
292 3s94_A LRP-6, low-density lipo 97.9 0.0075 2.6E-07 61.6 26.5 198 194-398 42-247 (619)
293 4a0p_A LRP6, LRP-6, low-densit 97.8 0.034 1.2E-06 56.9 31.3 217 209-436 13-234 (628)
294 1k3i_A Galactose oxidase precu 97.8 0.00074 2.5E-08 69.8 18.6 94 289-383 410-530 (656)
295 2ism_A Putative oxidoreductase 97.8 0.016 5.6E-07 54.7 26.4 221 195-423 34-332 (352)
296 3s25_A Hypothetical 7-bladed b 97.8 0.022 7.4E-07 52.6 26.1 240 139-426 20-282 (302)
297 2xbg_A YCF48-like protein; pho 97.7 0.031 1.1E-06 52.0 31.7 226 193-436 81-319 (327)
298 2vpj_A Kelch-like protein 12; 97.7 0.0073 2.5E-07 55.4 21.4 189 195-396 57-280 (301)
299 2p9w_A MAL S 1 allergenic prot 97.6 0.0047 1.6E-07 57.2 18.1 156 278-438 12-214 (334)
300 3sre_A PON1, serum paraoxonase 97.6 0.028 9.5E-07 52.9 23.8 179 209-391 81-295 (355)
301 3sre_A PON1, serum paraoxonase 97.5 0.03 1E-06 52.7 23.2 167 257-426 81-287 (355)
302 3a9g_A Putative uncharacterize 97.5 0.064 2.2E-06 50.6 29.0 223 195-425 32-330 (354)
303 2xn4_A Kelch-like protein 2; s 97.5 0.013 4.5E-07 53.7 20.6 187 197-396 58-278 (302)
304 3pbp_A Nucleoporin NUP82; beta 97.5 0.007 2.4E-07 57.8 18.3 131 258-390 40-208 (452)
305 2xbg_A YCF48-like protein; pho 97.5 0.065 2.2E-06 49.9 26.5 217 193-423 37-267 (327)
306 3ii7_A Kelch-like protein 7; p 97.5 0.016 5.4E-07 53.3 20.7 217 153-396 24-274 (306)
307 3kya_A Putative phosphatase; s 97.4 0.0084 2.9E-07 59.0 18.9 146 280-426 140-330 (496)
308 1n7d_A LDL receptor, low-densi 97.4 0.00026 8.8E-09 73.7 8.6 167 257-425 384-559 (699)
309 4asc_A Kelch repeat and BTB do 97.4 0.013 4.6E-07 54.1 19.2 224 147-397 7-280 (315)
310 2xzh_A Clathrin heavy chain 1; 97.4 0.081 2.8E-06 48.7 30.5 202 200-412 77-308 (365)
311 2vpj_A Kelch-like protein 12; 97.4 0.009 3.1E-07 54.8 17.5 226 199-437 13-276 (301)
312 2xn4_A Kelch-like protein 2; s 97.3 0.015 5.1E-07 53.4 18.0 225 199-438 14-275 (302)
313 1bpo_A Protein (clathrin); cla 97.3 0.14 4.9E-06 49.0 31.1 200 200-410 76-305 (494)
314 1zgk_A Kelch-like ECH-associat 97.3 0.0074 2.5E-07 55.7 15.6 229 194-438 18-286 (308)
315 3ii7_A Kelch-like protein 7; p 97.2 0.03 1E-06 51.4 18.9 222 201-438 12-271 (306)
316 2woz_A Kelch repeat and BTB do 97.2 0.039 1.3E-06 50.9 19.6 226 146-397 17-290 (318)
317 1zgk_A Kelch-like ECH-associat 97.1 0.029 9.8E-07 51.7 18.1 186 197-396 67-289 (308)
318 4asc_A Kelch repeat and BTB do 97.0 0.052 1.8E-06 50.0 18.9 212 203-427 7-254 (315)
319 3pbp_A Nucleoporin NUP82; beta 97.0 0.067 2.3E-06 51.1 18.8 134 289-424 31-198 (452)
320 1tl2_A L10, protein (tachylect 96.9 0.076 2.6E-06 46.0 17.2 175 251-438 6-209 (236)
321 2uvk_A YJHT; unknown function, 96.9 0.045 1.5E-06 51.4 17.6 226 197-428 16-328 (357)
322 2ism_A Putative oxidoreductase 96.9 0.041 1.4E-06 51.9 17.0 142 279-424 31-220 (352)
323 3s94_A LRP-6, low-density lipo 96.9 0.5 1.7E-05 48.1 33.1 195 194-396 351-553 (619)
324 3a9g_A Putative uncharacterize 96.7 0.1 3.5E-06 49.2 18.3 141 279-424 29-215 (354)
325 1cru_A Protein (soluble quinop 96.7 0.28 9.7E-06 47.8 21.9 103 280-382 28-162 (454)
326 2be1_A Serine/threonine-protei 96.7 0.0083 2.8E-07 56.1 10.1 194 201-399 10-236 (339)
327 2g8s_A Glucose/sorbosone dehyd 96.7 0.44 1.5E-05 44.7 27.1 236 195-436 21-351 (353)
328 2woz_A Kelch repeat and BTB do 96.7 0.14 4.8E-06 47.1 18.5 211 201-427 16-264 (318)
329 2uvk_A YJHT; unknown function, 96.6 0.17 5.9E-06 47.3 19.4 140 259-401 168-349 (357)
330 2zwa_A Leucine carboxyl methyl 96.6 0.15 5.2E-06 52.8 20.4 223 199-426 396-675 (695)
331 3s25_A Hypothetical 7-bladed b 96.6 0.099 3.4E-06 48.1 16.8 164 247-427 24-205 (302)
332 1xi4_A Clathrin heavy chain; a 96.6 0.21 7.2E-06 54.9 21.2 181 210-400 85-295 (1630)
333 3das_A Putative oxidoreductase 96.6 0.28 9.7E-06 45.9 19.9 161 278-441 31-237 (347)
334 3ei3_A DNA damage-binding prot 96.2 1.9 6.4E-05 47.3 36.5 182 193-381 555-754 (1158)
335 2g8s_A Glucose/sorbosone dehyd 96.1 0.25 8.7E-06 46.4 17.0 145 280-425 19-216 (353)
336 3das_A Putative oxidoreductase 96.1 0.92 3.1E-05 42.4 27.9 227 194-423 34-325 (347)
337 3ott_A Two-component system se 95.9 2 6.9E-05 44.7 31.9 253 140-424 69-341 (758)
338 3ott_A Two-component system se 95.8 2.2 7.5E-05 44.4 29.4 217 189-424 19-249 (758)
339 2zwa_A Leucine carboxyl methyl 95.7 1 3.6E-05 46.4 20.8 193 143-351 396-635 (695)
340 3sbq_A Nitrous-oxide reductase 95.7 0.6 2E-05 46.1 17.3 99 324-424 326-453 (638)
341 1cru_A Protein (soluble quinop 95.3 1.3 4.4E-05 43.2 19.0 97 241-339 31-162 (454)
342 1tl2_A L10, protein (tachylect 95.2 0.49 1.7E-05 41.0 13.6 136 241-386 45-202 (236)
343 3ei3_A DNA damage-binding prot 95.1 5 0.00017 44.0 35.6 226 193-426 515-757 (1158)
344 2be1_A Serine/threonine-protei 92.5 1.1 3.6E-05 41.8 11.4 144 251-396 12-185 (339)
345 2xzh_A Clathrin heavy chain 1; 92.1 7.3 0.00025 35.9 31.5 235 139-394 73-332 (365)
346 1bpo_A Protein (clathrin); cla 92.1 8.8 0.0003 36.8 31.3 235 139-394 72-331 (494)
347 1xi4_A Clathrin heavy chain; a 91.8 11 0.00038 41.8 19.4 202 142-367 75-304 (1630)
348 3sbq_A Nitrous-oxide reductase 91.1 1.4 4.7E-05 43.6 10.6 121 260-382 299-453 (638)
349 2wg3_C Hedgehog-interacting pr 90.5 9.6 0.00033 37.0 16.4 119 320-439 13-186 (463)
350 3q6k_A 43.2 kDa salivary prote 88.7 16 0.00055 34.3 23.4 163 260-423 124-341 (381)
351 3b7f_A Glycosyl hydrolase, BNR 88.2 17 0.00058 34.1 24.4 140 280-424 116-297 (394)
352 3zwu_A Alkaline phosphatase PH 83.6 3.8 0.00013 41.1 9.0 61 365-425 477-550 (592)
353 3b7f_A Glycosyl hydrolase, BNR 82.0 33 0.0011 32.0 21.3 132 280-414 233-391 (394)
354 4a9v_A PHOX; hydrolase, beta-p 81.0 7.7 0.00027 38.5 9.8 63 364-426 476-551 (592)
355 2wg3_C Hedgehog-interacting pr 78.0 52 0.0018 31.8 27.3 156 279-437 139-371 (463)
356 4gq2_M Nucleoporin NUP120; bet 76.8 83 0.0028 33.5 24.9 37 322-359 237-273 (950)
357 4gq2_M Nucleoporin NUP120; bet 75.9 47 0.0016 35.5 14.9 34 193-226 237-272 (950)
358 4fhn_B Nucleoporin NUP120; pro 70.5 23 0.00079 38.7 11.2 36 323-359 240-275 (1139)
359 3qhy_B Beta-lactamase inhibito 69.7 60 0.002 28.8 17.5 181 193-394 25-207 (282)
360 3kci_A Probable E3 ubiquitin-p 61.8 1E+02 0.0035 28.6 24.8 193 193-392 54-291 (389)
361 3f7f_A Nucleoporin NUP120; nuc 59.0 1.6E+02 0.0055 30.1 13.8 38 192-229 222-259 (729)
362 3qhy_B Beta-lactamase inhibito 58.8 96 0.0033 27.4 19.4 234 139-416 29-264 (282)
363 3q6k_A 43.2 kDa salivary prote 58.1 1.2E+02 0.0041 28.3 23.8 170 212-381 124-341 (381)
364 3zwu_A Alkaline phosphatase PH 56.3 39 0.0013 33.8 8.8 60 281-340 478-550 (592)
365 1sqj_A OXG-RCBH, oligoxylogluc 55.0 2E+02 0.0067 29.8 18.6 146 278-426 14-190 (789)
366 4a9v_A PHOX; hydrolase, beta-p 53.8 64 0.0022 32.1 9.7 61 280-340 477-550 (592)
367 4fhn_B Nucleoporin NUP120; pro 50.9 54 0.0018 35.8 9.7 30 246-276 247-276 (1139)
368 3f7f_A Nucleoporin NUP120; nuc 45.8 2.6E+02 0.009 28.6 15.7 35 323-360 224-258 (729)
369 1sqj_A OXG-RCBH, oligoxylogluc 41.8 3.1E+02 0.011 28.3 22.6 146 235-384 15-190 (789)
370 2cn3_A Xyloglucanase, beta-1,4 40.0 3.2E+02 0.011 27.9 18.2 103 279-382 23-151 (737)
371 3no0_A DNA gyrase subunit A; D 39.9 1.9E+02 0.0066 25.3 21.3 185 200-393 34-245 (276)
372 3uc1_A DNA gyrase subunit A; D 38.3 2.3E+02 0.0078 25.7 23.3 192 200-393 52-278 (327)
373 4hvt_A Ritya.17583.B, post-pro 34.0 3.9E+02 0.013 27.2 21.1 185 245-435 138-377 (711)
374 3uc1_A DNA gyrase subunit A; D 28.5 3.3E+02 0.011 24.6 19.4 154 192-350 95-278 (327)
375 3no0_A DNA gyrase subunit A; D 22.5 3.9E+02 0.013 23.3 18.1 152 193-350 69-245 (276)
376 1suu_A DNA gyrase subunit A; t 22.0 4.2E+02 0.014 23.6 25.0 189 200-393 7-230 (312)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7e-39 Score=305.37 Aligned_cols=262 Identities=15% Similarity=0.151 Sum_probs=230.9
Q ss_pred eEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCC
Q 013184 146 DVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKYLDQPG 222 (448)
Q Consensus 146 ~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~ 222 (448)
.++.+ .+++|++|+..++.......+.||..+ |.++++ ++.++++|+.||.|++|++.+..
T Consensus 50 ~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~----------------v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~ 113 (321)
T 3ow8_A 50 TVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLG----------------VVSVDISHTLPIAASSSLDAHIRLWDLENGK 113 (321)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSC----------------EEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred EEEEEcCCCCEEEEECCCCCeeeeeeeccCCCC----------------EEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 45554 478899999877666666677888764 888888 77899999999999999998765
Q ss_pred ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCc
Q 013184 223 VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPE 301 (448)
Q Consensus 223 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~ 301 (448)
.. ..+ ..+...+.++.+ +|++. +|++++.|+.|++|++++++....+. +...|.+++|+|++++|++++.|+.
T Consensus 114 ~~--~~~-~~~~~~~~~~~~--spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~ 187 (321)
T 3ow8_A 114 QI--KSI-DAGPVDAWTLAF--SPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGI 187 (321)
T ss_dssp EE--EEE-ECCTTCCCCEEE--CTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EE--EEE-eCCCccEEEEEE--CCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCe
Confidence 33 222 233444455655 89887 89999999999999999998887777 7788999999999999999999999
Q ss_pred EEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEE
Q 013184 302 GILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMA 381 (448)
Q Consensus 302 i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~ 381 (448)
|++||+++++.+..+.+|...|.+++|+|++++|++|+.|++|++||++. ...+..+.+|...|.+++|+|+|++|++|
T Consensus 188 i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~sp~~~~l~s~ 266 (321)
T 3ow8_A 188 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH-ANLAGTLSGHASWVLNVAFCPDDTHFVSS 266 (321)
T ss_dssp EEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC-cceeEEEcCCCCceEEEEECCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999987 77888999999999999999999999999
Q ss_pred eCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 382 EPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 382 ~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
+.|+.|+|||+.++.++..+..|.+.|.+++|+|+|++|++++.|+++.
T Consensus 267 s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~ 315 (321)
T 3ow8_A 267 SSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIH 315 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred eCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence 9999999999999999999999999999999999999999999997653
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.4e-38 Score=308.98 Aligned_cols=269 Identities=18% Similarity=0.258 Sum_probs=235.5
Q ss_pred ceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeE
Q 013184 137 NLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGEL 213 (448)
Q Consensus 137 ~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i 213 (448)
.+.+.+....++.+ .+++|++||..++..... +.+|.. .|.++++ ++++|++|+.||+|
T Consensus 113 ~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~--l~~h~~----------------~V~~v~~~~~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 113 RVIFHPVFSVMVSASEDATIKVWDYETGDFERT--LKGHTD----------------SVQDISFDHSGKLLASCSADMTI 174 (410)
T ss_dssp EEEECSSSSEEEEEESSSCEEEEETTTCCCCEE--ECCCSS----------------CEEEEEECTTSSEEEEEETTSCC
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE--EeccCC----------------cEEEEEEcCCCCEEEEEeCCCeE
Confidence 34455666666665 477899999987655443 455655 3888888 78999999999999
Q ss_pred EEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCE
Q 013184 214 ICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKL 292 (448)
Q Consensus 214 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~ 292 (448)
++|++..... ......|...+.++.+ +|++. +|++|+.|++|++||+.+++++..+. |...|.++.++|++++
T Consensus 175 ~iwd~~~~~~---~~~~~~h~~~V~~v~~--~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~ 248 (410)
T 1vyh_C 175 KLWDFQGFEC---IRTMHGHDHNVSSVSI--MPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 248 (410)
T ss_dssp CEEETTSSCE---EECCCCCSSCEEEEEE--CSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSE
T ss_pred EEEeCCCCce---eEEEcCCCCCEEEEEE--eCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCE
Confidence 9999976543 3344456666777766 88876 89999999999999999999988887 8899999999999999
Q ss_pred EEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCC--------------------CCEEEEEeCCCcEEEEEccCC
Q 013184 293 LVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPD--------------------GRIFATGNQDKTCRVWDVRNL 352 (448)
Q Consensus 293 l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~--------------------g~~l~s~~~d~~i~iwd~~~~ 352 (448)
|++++.|+.|++||+.+++....+.+|...|.+++|+|+ |.+|++|+.|++|++||+++
T Consensus 249 l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~- 327 (410)
T 1vyh_C 249 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST- 327 (410)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-
T ss_pred EEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC-
Confidence 999999999999999999999999999999999999996 67999999999999999987
Q ss_pred CcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 353 SKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 353 ~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
+.++..+.+|...|++++|+|+|++|++|+.|+.|+|||+.+++.+..+..|...|++++|+|++++|++|+.|+++.
T Consensus 328 ~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~ 405 (410)
T 1vyh_C 328 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 405 (410)
T ss_dssp TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEE
T ss_pred CceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence 788999999999999999999999999999999999999999998889999999999999999999999999997653
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.3e-37 Score=294.71 Aligned_cols=271 Identities=21% Similarity=0.290 Sum_probs=228.6
Q ss_pred ceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeE
Q 013184 137 NLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGEL 213 (448)
Q Consensus 137 ~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i 213 (448)
.+.+.+....++.+ .++.|++|+..++.....+ .+|.. .|.++++ ++++|++|+.||.|
T Consensus 60 ~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~--~~~~~----------------~v~~~~~s~~~~~l~s~~~d~~v 121 (340)
T 1got_B 60 AMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI--PLRSS----------------WVMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE--ECSSS----------------CEEEEEECTTSSEEEEEETTCEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe--ecCCc----------------cEEEEEECCCCCEEEEEeCCCeE
Confidence 34566666666665 4778999998776544433 33332 3778877 88999999999999
Q ss_pred EEEEcCCCCce-eEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCC
Q 013184 214 ICKYLDQPGVS-FCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGK 291 (448)
Q Consensus 214 ~vw~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~ 291 (448)
++|++...... ........|...+.++.+ ++++ .+++++.|+.|++||+++++.+..+. |...|.+++|+|+++
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 197 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCSSCEEEEEE--EETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred EEEECccCCCcceeEEEecCCCccEEEEEE--CCCC--cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC
Confidence 99999875421 223334456666667766 4554 58999999999999999999988887 899999999999999
Q ss_pred EEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEcc--CCCCeEEE
Q 013184 292 LLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKG--NLGAIRSI 369 (448)
Q Consensus 292 ~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~l 369 (448)
++++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++|+.|++|++||++. .+.+..+.. +...|.++
T Consensus 198 ~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-DQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTCCSCEEEE
T ss_pred EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC-CcEEEEEccCCcccceEEE
Confidence 999999999999999999999999999999999999999999999999999999999986 556655542 33579999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 370 RFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 370 ~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
+|+|+|++|++|+.|+.|++||+.++.....+.+|.+.|.+++|+|+|++|++|+.|+++.
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~ 337 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred EECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEE
Confidence 9999999999999999999999999999889999999999999999999999999998754
No 4
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.9e-37 Score=295.32 Aligned_cols=284 Identities=17% Similarity=0.207 Sum_probs=222.9
Q ss_pred ccceeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-cCCEEEEEeCCCeE
Q 013184 135 LRNLVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-RDNLLIAGGFQGEL 213 (448)
Q Consensus 135 ~r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-~~~~lvsg~~dg~i 213 (448)
+..+.+.+++..+..+++.++++|+.. ....... ...|...+.. ........|.++++ .++.|++|+.||+|
T Consensus 33 v~~~~fs~dG~~l~~~sd~~~r~Wd~~----~~~~~~~-~~~~~~~~~~--~~~~~~~~v~~~~~s~d~~l~~~s~dg~v 105 (344)
T 4gqb_B 33 LEAARYRSDGALLLGASSLSGRCWAGS----LWLFKDP-CAAPNEGFCS--AGVQTEAGVADLTWVGERGILVASDSGAV 105 (344)
T ss_dssp EEEEEECTTSCEEEEEECCSSSCCCEE----EEEESSG-GGTTCGGGCS--EEEEESSCEEEEEEETTTEEEEEETTSEE
T ss_pred EEEEEECCCCCEEEEEeCCceEEeece----eeeeccc-cccCCcceee--eeeccCCCEEEEEEeCCCeEEEEECCCEE
Confidence 445566777777777788889999731 1111100 0001000000 00011235899999 56789999999999
Q ss_pred EEEEcCCCCceeEE-EeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCC-
Q 013184 214 ICKYLDQPGVSFCS-RTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDG- 290 (448)
Q Consensus 214 ~vw~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~- 290 (448)
++|++.+.+..... .....|...+.++++ +|+|. +|++|+.|++|++||+++++++..+. |...|++++|+|++
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~--spdg~-~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~ 182 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSV--LSSGT-QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD 182 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEE--CTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCT
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEE--CCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCC
Confidence 99999887754333 234467777778877 89887 89999999999999999999999888 99999999999987
Q ss_pred CEEEEEecCCcEEEEECCCCceeEeee--cCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeE
Q 013184 291 KLLVIVGDNPEGILVDSQTGKAIMPLC--GHLDFSFASAWHP-DGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIR 367 (448)
Q Consensus 291 ~~l~~~~~d~~i~i~d~~~~~~~~~l~--~h~~~v~~~~~~p-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 367 (448)
.+|++++.|+.|++||+++++.+..+. .|...+.+++|+| ++++|++|+.|++|+|||+++ ++++..+.+|...|+
T Consensus 183 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~-~~~~~~~~~h~~~v~ 261 (344)
T 4gqb_B 183 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS-TSCVLSSAVHSQCVT 261 (344)
T ss_dssp TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEE
T ss_pred CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-CcEEEEEcCCCCCEE
Confidence 478999999999999999999888774 4566799999999 567899999999999999987 788999999999999
Q ss_pred EEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCe-EEEEEecCCcc
Q 013184 368 SIRFTSDG-NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEA-LFIGVWDRTYG 430 (448)
Q Consensus 368 ~l~~sp~g-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~-L~~~~~D~~~~ 430 (448)
+++|+|+| ++||+|+.|++|+|||+.+++. ..+.+|.+.|.+++|+|+++. |++|++|+++.
T Consensus 262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 262 GLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTCCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCCCcE-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 99999998 6899999999999999998765 457789999999999999875 56889997753
No 5
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.5e-36 Score=289.94 Aligned_cols=272 Identities=20% Similarity=0.322 Sum_probs=226.6
Q ss_pred ceeeeCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeE
Q 013184 137 NLVWSTSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGEL 213 (448)
Q Consensus 137 ~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i 213 (448)
.+.+.+.+..++.++ +++|++|+..+......+... .. .|.++++ ++.+|++|+.||.+
T Consensus 69 ~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~--~~----------------~v~~~~~sp~g~~lasg~~d~~i 130 (354)
T 2pbi_B 69 CMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP--CT----------------WVMACAYAPSGCAIACGGLDNKC 130 (354)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS--SS----------------CCCEEEECTTSSEEEEESTTSEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecC--CC----------------CEEEEEECCCCCEEEEeeCCCCE
Confidence 345666676676664 778999998776655544332 22 3667777 89999999999999
Q ss_pred EEEEcCCCCc---eeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECC-
Q 013184 214 ICKYLDQPGV---SFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSP- 288 (448)
Q Consensus 214 ~vw~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp- 288 (448)
++|++..... .........|...+.++.+ +|++. .|++++.|++|++||+++++++..+. |...|.+++|+|
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~ 207 (354)
T 2pbi_B 131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSF--TNSDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207 (354)
T ss_dssp EEEECCCCTTCCSGGGCEEEEECSSCEEEEEE--CSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCC
T ss_pred EEEEEeccccccccccceeeeccCCcEEEEEE--eCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeC
Confidence 9999865421 1111222345566666666 77776 89999999999999999999998887 899999999988
Q ss_pred -CCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccC--CCC
Q 013184 289 -DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGN--LGA 365 (448)
Q Consensus 289 -~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~ 365 (448)
++++|++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++|+.|++|++||++. ...+..+..+ ...
T Consensus 208 ~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~~~~~~~ 286 (354)
T 2pbi_B 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA-DREVAIYSKESIIFG 286 (354)
T ss_dssp SSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTCCSC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEcCCCcccc
Confidence 578999999999999999999999999999999999999999999999999999999999986 5566555543 347
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 366 IRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 366 v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
+.+++|+|+|++|++|+.|+.|+|||+.++..+..+.+|.+.|++++|+|+|++|++|+.|+++.
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~ 351 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLR 351 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEE
Confidence 89999999999999999999999999999998888899999999999999999999999997653
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.9e-36 Score=281.94 Aligned_cols=266 Identities=12% Similarity=0.115 Sum_probs=222.4
Q ss_pred ceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeE
Q 013184 137 NLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGEL 213 (448)
Q Consensus 137 ~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i 213 (448)
.+.+.+....++.+ .++.|++|+..++.. +..+.+|.. .|.++++ ++++|++|+.||.|
T Consensus 18 ~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~--~~~~~~~~~----------------~v~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 18 GIDFHPTEPWVLTTLYSGRVELWNYETQVE--VRSIQVTET----------------PVRAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEE--EEEEECCSS----------------CEEEEEEEGGGTEEEEEETTSEE
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCce--eEEeeccCC----------------cEEEEEEeCCCCEEEEECCCCEE
Confidence 34566777766666 478899999877543 334444444 3777777 88999999999999
Q ss_pred EEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc-eEEEEee-cCCCeeEEEECC-CC
Q 013184 214 ICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF-QLSKHFS-FPWPVNHTSLSP-DG 290 (448)
Q Consensus 214 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~-~~~~v~~~~~sp-~~ 290 (448)
++|++.+.... .....|...+.++.+ +|++. +|++|+.|++|++||++++ .+...+. |...|.+++|+| ++
T Consensus 80 ~vwd~~~~~~~---~~~~~h~~~v~~~~~--~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 153 (304)
T 2ynn_A 80 RVFNYNTGEKV---VDFEAHPDYIRSIAV--HPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP 153 (304)
T ss_dssp EEEETTTCCEE---EEEECCSSCEEEEEE--CSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCT
T ss_pred EEEECCCCcEE---EEEeCCCCcEEEEEE--cCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCC
Confidence 99999887643 233456666777776 88876 8999999999999999877 4555565 899999999999 68
Q ss_pred CEEEEEecCCcEEEEECCCCceeEeee-cCCCcEEEEEEcC--CCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeE
Q 013184 291 KLLVIVGDNPEGILVDSQTGKAIMPLC-GHLDFSFASAWHP--DGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIR 367 (448)
Q Consensus 291 ~~l~~~~~d~~i~i~d~~~~~~~~~l~-~h~~~v~~~~~~p--~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 367 (448)
.+|++++.|+.|++||++++.....+. +|...+..++|+| ++.+|++|+.|++|++||+++ ++++..+.+|...|.
T Consensus 154 ~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~-~~~~~~~~~h~~~v~ 232 (304)
T 2ynn_A 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVS 232 (304)
T ss_dssp TEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEE
T ss_pred CEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC-CccceeeCCCCCCEE
Confidence 999999999999999998887766654 5668899999987 778999999999999999987 788999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCC--eEEEEEecC
Q 013184 368 SIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTE--ALFIGVWDR 427 (448)
Q Consensus 368 ~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~--~L~~~~~D~ 427 (448)
+++|+|++++|++|+.|+.|+|||+.+++....+..|...+.+++|+|++. +|++|+.|+
T Consensus 233 ~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g 294 (304)
T 2ynn_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294 (304)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc
Confidence 999999999999999999999999999999988888999999999999885 577776654
No 7
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.3e-35 Score=287.94 Aligned_cols=286 Identities=17% Similarity=0.204 Sum_probs=230.8
Q ss_pred cceeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcc---cCCcceeeEEEEe--cCCEEEEEeCC
Q 013184 136 RNLVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLL---EGFTQTQVSTLAV--RDNLLIAGGFQ 210 (448)
Q Consensus 136 r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~---~~~~~~~i~~l~~--~~~~lvsg~~d 210 (448)
..+.+++.+..+++++++++++|+..++.....+ .++.... ..+..+. .......|.++++ ++++|++|+.|
T Consensus 68 ~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l--~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d 144 (393)
T 1erj_A 68 CCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARL--SDDSAAN-KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED 144 (393)
T ss_dssp CEEEECTTSSEEEEECBSCEEEEETTTCCEEEEE--CC------------------CCCCBEEEEEECTTSSEEEEEETT
T ss_pred EEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEe--cCccccc-cccccccccccCCCceeEEEEEECCCCCEEEEEcCC
Confidence 3455777888888888889999998776554433 3222110 0000000 0111234888888 88999999999
Q ss_pred CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECC-C
Q 013184 211 GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSP-D 289 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp-~ 289 (448)
|.|++|++.+... ......|...+.++.+ +|++. +|++++.|++|++||++++++...+.+...+.+++|+| +
T Consensus 145 ~~i~iwd~~~~~~---~~~~~~h~~~v~~~~~--~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 145 RLIRIWDIENRKI---VMILQGHEQDIYSLDY--FPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218 (393)
T ss_dssp SCEEEEETTTTEE---EEEECCCSSCEEEEEE--CTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred CeEEEEECCCCcE---EEEEccCCCCEEEEEE--cCCCC-EEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence 9999999987643 2334456666677766 88886 89999999999999999999988888888999999999 8
Q ss_pred CCEEEEEecCCcEEEEECCCCceeEee-------ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCC----------
Q 013184 290 GKLLVIVGDNPEGILVDSQTGKAIMPL-------CGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNL---------- 352 (448)
Q Consensus 290 ~~~l~~~~~d~~i~i~d~~~~~~~~~l-------~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~---------- 352 (448)
+++|++++.|+.|++||+++++.+..+ .+|...|.+++|+|+|++|++|+.|++|++||+++.
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence 999999999999999999999888776 579999999999999999999999999999999752
Q ss_pred -CcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEcc------CCCeEEEEEe
Q 013184 353 -SKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSP------DTEALFIGVW 425 (448)
Q Consensus 353 -~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fsp------dg~~L~~~~~ 425 (448)
..+...+.+|...|.+++|+|++++|++|+.|+.|++||+.++..+..+.+|.+.|.+++|+| ++++|++|+.
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~ 378 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 378 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECC
Confidence 234567888999999999999999999999999999999999999989999999999999986 6889999999
Q ss_pred cCCcc
Q 013184 426 DRTYG 430 (448)
Q Consensus 426 D~~~~ 430 (448)
|+++.
T Consensus 379 Dg~i~ 383 (393)
T 1erj_A 379 DCKAR 383 (393)
T ss_dssp TSEEE
T ss_pred CCcEE
Confidence 97654
No 8
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=281.31 Aligned_cols=232 Identities=19% Similarity=0.255 Sum_probs=208.7
Q ss_pred eeEEEEe------cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEec
Q 013184 193 QVSTLAV------RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM 266 (448)
Q Consensus 193 ~i~~l~~------~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~ 266 (448)
.|+++++ ++.+|++|+.||+|++|++......... ....|...+.++.+ ++++. ++++++.|++|++||+
T Consensus 34 ~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~-~l~gh~~~v~~~~~--~~~~~-~l~s~s~D~~i~lWd~ 109 (321)
T 3ow8_A 34 AIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQW-SLEGHQLGVVSVDI--SHTLP-IAASSSLDAHIRLWDL 109 (321)
T ss_dssp CEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEE-EECCCSSCEEEEEE--CSSSS-EEEEEETTSEEEEEET
T ss_pred cEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeee-eeccCCCCEEEEEE--CCCCC-EEEEEeCCCcEEEEEC
Confidence 4899988 3568999999999999999876533222 33455666667766 77776 8999999999999999
Q ss_pred CCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 013184 267 ERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCR 345 (448)
Q Consensus 267 ~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~ 345 (448)
.+++.+..+. +...+.+++|+|++++|++++.++.|++|++.+++....+..|...+.+++|+|+|++|++|+.|+.|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~ 189 (321)
T 3ow8_A 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189 (321)
T ss_dssp TTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEE
Confidence 9999888887 788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 346 VWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 346 iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
+||+++ ++++..+.+|..+|++++|+|+|++|++|+.|+.|+|||++++.....+.+|.+.|.+++|+|+|++|++++.
T Consensus 190 iwd~~~-~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 268 (321)
T 3ow8_A 190 IFDIAT-GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS 268 (321)
T ss_dssp EEETTT-TEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEECCC-CcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 999987 7888999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred cCCc
Q 013184 426 DRTY 429 (448)
Q Consensus 426 D~~~ 429 (448)
|+++
T Consensus 269 D~~v 272 (321)
T 3ow8_A 269 DKSV 272 (321)
T ss_dssp TSCE
T ss_pred CCcE
Confidence 9764
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2e-35 Score=279.12 Aligned_cols=231 Identities=16% Similarity=0.233 Sum_probs=202.7
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
.|.++++ ++++|++|+.||.|++|++.+.... .....+...+.++.+ +|++. +|++|+.|+.|++||+.+++
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~---~~~~~~~~~v~~~~~--~~~~~-~l~s~s~d~~i~vwd~~~~~ 88 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV---RSIQVTETPVRAGKF--IARKN-WIIVGSDDFRIRVFNYNTGE 88 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE---EEEECCSSCEEEEEE--EGGGT-EEEEEETTSEEEEEETTTCC
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcee---EEeeccCCcEEEEEE--eCCCC-EEEEECCCCEEEEEECCCCc
Confidence 4889988 8899999999999999999876432 233345566667766 77776 89999999999999999999
Q ss_pred EEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCC-ceeEeeecCCCcEEEEEEcC-CCCEEEEEeCCCcEEEE
Q 013184 271 LSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTG-KAIMPLCGHLDFSFASAWHP-DGRIFATGNQDKTCRVW 347 (448)
Q Consensus 271 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~~~~~p-~g~~l~s~~~d~~i~iw 347 (448)
.+..+. |...|.+++|+|++++|++++.|+.|++||++++ .....+.+|...|.+++|+| ++.+|++|+.|++|++|
T Consensus 89 ~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iw 168 (304)
T 2ynn_A 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168 (304)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 988887 9999999999999999999999999999999887 45567889999999999999 67899999999999999
Q ss_pred EccCCCcceEEEccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 348 DVRNLSKSVAVLKGNLGAIRSIRFTS--DGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 348 d~~~~~~~~~~~~~~~~~v~~l~~sp--~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
|++..........+|...+..+.|+| ++++|++|+.|+.|+|||++++..+..+.+|...|..++|+|++++|++|+.
T Consensus 169 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~ 248 (304)
T 2ynn_A 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248 (304)
T ss_dssp ETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred ECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcC
Confidence 99874444444456778899999987 7789999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 013184 426 DRTY 429 (448)
Q Consensus 426 D~~~ 429 (448)
|+++
T Consensus 249 Dg~i 252 (304)
T 2ynn_A 249 DGTL 252 (304)
T ss_dssp TSCE
T ss_pred CCeE
Confidence 9765
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.6e-36 Score=294.44 Aligned_cols=274 Identities=21% Similarity=0.286 Sum_probs=223.5
Q ss_pred cceeeeCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCe
Q 013184 136 RNLVWSTSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGE 212 (448)
Q Consensus 136 r~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~ 212 (448)
..+.|.+.+..++.++ +++|++||..++.....+ .+|..+ |.++++ ++++|++|+.|+.
T Consensus 70 ~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~--~~h~~~----------------v~~~~~s~~g~~las~~~d~~ 131 (380)
T 3iz6_a 70 YSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI--KLHCPW----------------VMECAFAPNGQSVACGGLDSA 131 (380)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE--ECCCTT----------------CCCCEECTTSSEEEECCSSSC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE--ecCCCC----------------EEEEEECCCCCEEEEeeCCCc
Confidence 3455777777777764 778999998776544443 444432 566666 8999999999999
Q ss_pred EEEEEcCCCCc----eeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEe-----e-cCCCee
Q 013184 213 LICKYLDQPGV----SFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHF-----S-FPWPVN 282 (448)
Q Consensus 213 i~vw~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~-----~-~~~~v~ 282 (448)
+++|++..... .........|.+.+.++.+ .|++...|++|+.|++|++||+.+++.+..+ . |...|.
T Consensus 132 v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~--~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 132 CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQY--VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBC--CSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred EEEEECCCCccccCCccceeeccCCCcceEEEEE--ecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence 99999875321 1112233455555556655 6776668999999999999999999988776 2 778899
Q ss_pred EEEECC-CCCEEEEEecCCcEEEEECC-CCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEc
Q 013184 283 HTSLSP-DGKLLVIVGDNPEGILVDSQ-TGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLK 360 (448)
Q Consensus 283 ~~~~sp-~~~~l~~~~~d~~i~i~d~~-~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 360 (448)
+++|+| ++.+|++|+.|+.|++||++ .++.+..+.+|...|.+++|+|++++|++|+.|++|++||+++ +.++..+.
T Consensus 210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~ 288 (380)
T 3iz6_a 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT-GHQLQVYN 288 (380)
T ss_dssp EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT-TEEEEEEC
T ss_pred EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC-CcEEEEec
Confidence 999987 88999999999999999998 5577888999999999999999999999999999999999987 67777765
Q ss_pred cCC-------CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee----ecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 361 GNL-------GAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQE----IDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 361 ~~~-------~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~----~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
.+. ..|.+++|+|+|++|++|+.||.|+|||+.+++....+ .+|.+.|++++|+|+|++|++|++|+++
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i 368 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNL 368 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCE
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCE
Confidence 543 24899999999999999999999999999988877665 5689999999999999999999999764
Q ss_pred c
Q 013184 430 G 430 (448)
Q Consensus 430 ~ 430 (448)
.
T Consensus 369 ~ 369 (380)
T 3iz6_a 369 K 369 (380)
T ss_dssp E
T ss_pred E
Confidence 3
No 11
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.4e-35 Score=290.59 Aligned_cols=230 Identities=17% Similarity=0.280 Sum_probs=210.6
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
.|+++++ ++.+|++|+.||.|++|++.+.... .....|...+.++.+ +|++. +|++|+.|++|++||+.+++
T Consensus 110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~---~~l~~h~~~V~~v~~--~~~~~-~l~sgs~D~~i~iwd~~~~~ 183 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE---RTLKGHTDSVQDISF--DHSGK-LLASCSADMTIKLWDFQGFE 183 (410)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC---EEECCCSSCEEEEEE--CTTSS-EEEEEETTSCCCEEETTSSC
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE---EEEeccCCcEEEEEE--cCCCC-EEEEEeCCCeEEEEeCCCCc
Confidence 4899988 7899999999999999999887653 233456666777766 88876 89999999999999999999
Q ss_pred EEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 013184 271 LSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDV 349 (448)
Q Consensus 271 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~ 349 (448)
++..+. |...|.+++|+|++++|++++.|+.|++||+++++++..+.+|...|.+++|+|+|.+|++|+.|++|++||+
T Consensus 184 ~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~ 263 (410)
T 1vyh_C 184 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263 (410)
T ss_dssp EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 888887 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEccCCCCeEEEEEcCC--------------------CCEEEEEeCCCeEEEEECCCCceeeeeecCcCceE
Q 013184 350 RNLSKSVAVLKGNLGAIRSIRFTSD--------------------GNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEIS 409 (448)
Q Consensus 350 ~~~~~~~~~~~~~~~~v~~l~~sp~--------------------g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~ 409 (448)
++ ..+...+.+|...|.+++|+|+ |.+|++|+.|+.|++||+.++..+..+.+|.+.|.
T Consensus 264 ~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~ 342 (410)
T 1vyh_C 264 AT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 342 (410)
T ss_dssp TT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred CC-CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEE
Confidence 87 7888899999999999999996 77999999999999999999999999999999999
Q ss_pred EEEEccCCCeEEEEEecCCc
Q 013184 410 GMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 410 ~~~fspdg~~L~~~~~D~~~ 429 (448)
+++|+|+|++|++|+.|+++
T Consensus 343 ~v~~~~~g~~l~s~s~D~~i 362 (410)
T 1vyh_C 343 GVLFHSGGKFILSCADDKTL 362 (410)
T ss_dssp EEEECSSSSCEEEEETTTEE
T ss_pred EEEEcCCCCEEEEEeCCCeE
Confidence 99999999999999998754
No 12
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=278.91 Aligned_cols=276 Identities=17% Similarity=0.208 Sum_probs=220.2
Q ss_pred ccceeeeCCCCeEEEec-CCeEEEEecCCCceeEEE-ecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCC
Q 013184 135 LRNLVWSTSKHDVYLMS-HFSIVHWSSLSSKRTEVL-DVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQ 210 (448)
Q Consensus 135 ~r~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~-~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~d 210 (448)
...+.+.+.+..++.++ +++|++|+..++...... ...||.. .|.++++ ++++|++|+.|
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~----------------~v~~~~~sp~g~~l~s~s~D 82 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQR----------------TVRKVAWSPCGNYLASASFD 82 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSS----------------CEEEEEECTTSSEEEEEETT
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCC----------------cEEEEEECCCCCEEEEEECC
Confidence 34556778777777764 778999998765433322 2356655 4889988 78999999999
Q ss_pred CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce---EEEEee-cCCCeeEEEE
Q 013184 211 GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ---LSKHFS-FPWPVNHTSL 286 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~-~~~~v~~~~~ 286 (448)
|.+++|++....... ......|...+.++.+ +|++. +|++|+.|+.|++||+.++. ++..+. |...|.+++|
T Consensus 83 ~~v~iw~~~~~~~~~-~~~~~~h~~~v~~v~~--sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~ 158 (345)
T 3fm0_A 83 ATTCIWKKNQDDFEC-VTTLEGHENEVKSVAW--APSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW 158 (345)
T ss_dssp SCEEEEEECCC-EEE-EEEECCCSSCEEEEEE--CTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred CcEEEEEccCCCeEE-EEEccCCCCCceEEEE--eCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence 999999988765332 3344456667777776 88876 89999999999999997653 444554 8899999999
Q ss_pred CCCCCEEEEEecCCcEEEEECCCCc--eeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCC-----------
Q 013184 287 SPDGKLLVIVGDNPEGILVDSQTGK--AIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLS----------- 353 (448)
Q Consensus 287 sp~~~~l~~~~~d~~i~i~d~~~~~--~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~----------- 353 (448)
+|++++|++++.|+.|++||..+++ +...+.+|...|.+++|+|+|++|++|+.|++|+||+.....
T Consensus 159 ~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~ 238 (345)
T 3fm0_A 159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSD 238 (345)
T ss_dssp CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---
T ss_pred CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccC
Confidence 9999999999999999999998875 456788999999999999999999999999999999975322
Q ss_pred ---cceEEEcc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee---------eeeecCcCceEEEEEccCCC-e
Q 013184 354 ---KSVAVLKG-NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEK---------EQEIDFFGEISGMTFSPDTE-A 419 (448)
Q Consensus 354 ---~~~~~~~~-~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~---------~~~~~~~~~v~~~~fspdg~-~ 419 (448)
.++..+.+ |...|.+++|+|++..|++++.|+.|++|+...+... ....+|...|.+++|+|++. +
T Consensus 239 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~ 318 (345)
T 3fm0_A 239 PSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGL 318 (345)
T ss_dssp CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTE
T ss_pred CccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceE
Confidence 22344554 8889999999999999999999999999998754311 11236889999999999984 8
Q ss_pred EEEEEecCCcc
Q 013184 420 LFIGVWDRTYG 430 (448)
Q Consensus 420 L~~~~~D~~~~ 430 (448)
|++|+.|+++.
T Consensus 319 laS~s~Dg~v~ 329 (345)
T 3fm0_A 319 LASCSDDGEVA 329 (345)
T ss_dssp EEEEETTSCEE
T ss_pred EEEcCCCCcEE
Confidence 99999997753
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.8e-35 Score=286.07 Aligned_cols=275 Identities=15% Similarity=0.230 Sum_probs=214.3
Q ss_pred ccceeeeCCCCeEEEec-------CCeEEEEecCCCceeEE--EecCCCCCCCCCCCCCcccCCcceeeEEEEe-cCCEE
Q 013184 135 LRNLVWSTSKHDVYLMS-------HFSIVHWSSLSSKRTEV--LDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-RDNLL 204 (448)
Q Consensus 135 ~r~l~~~~~~~~v~~~~-------~~~v~~w~~~~~~~~~~--~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-~~~~l 204 (448)
+..+-+++++..++.++ +++|++|+..++..... ....+| ...|.++++ ..+.+
T Consensus 45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~----------------~~~V~~~~~s~d~~~ 108 (357)
T 4g56_B 45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQT----------------EAGVTDVAWVSEKGI 108 (357)
T ss_dssp EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEEC----------------SSCEEEEEEETTTEE
T ss_pred EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCC----------------CCCEEEEEEcCCCCE
Confidence 34455677777777776 45677777654321110 001111 125899999 55677
Q ss_pred EEEeCCCeEEEEEcCCCCceeEE-EeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCee
Q 013184 205 IAGGFQGELICKYLDQPGVSFCS-RTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVN 282 (448)
Q Consensus 205 vsg~~dg~i~vw~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~ 282 (448)
++++.||+|++|++.+....... .....|...+.++.+ +|++. +|++|+.|+.|++||+++++++..+. |...|+
T Consensus 109 l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~--spdg~-~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~ 185 (357)
T 4g56_B 109 LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV--FSDGT-QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVN 185 (357)
T ss_dssp EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEE--CSSSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEE--CCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEE
Confidence 78899999999999876533221 223356677777776 88886 89999999999999999999999888 899999
Q ss_pred EEEECCCCC-EEEEEecCCcEEEEECCCCceeEeee--cCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEEccCCCcceEE
Q 013184 283 HTSLSPDGK-LLVIVGDNPEGILVDSQTGKAIMPLC--GHLDFSFASAWHPD-GRIFATGNQDKTCRVWDVRNLSKSVAV 358 (448)
Q Consensus 283 ~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~~l~--~h~~~v~~~~~~p~-g~~l~s~~~d~~i~iwd~~~~~~~~~~ 358 (448)
+++|+|++. ++++++.|+.|++||+++++.+..+. .|...+.+++|+|+ +.+|++|+.|+.|++||+++ .+++..
T Consensus 186 ~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~-~~~~~~ 264 (357)
T 4g56_B 186 CVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN-PDSAQT 264 (357)
T ss_dssp EEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC-GGGCEE
T ss_pred EEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC-CcEeEE
Confidence 999999875 78899999999999999998776554 46778999999997 56899999999999999987 788899
Q ss_pred EccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEcc-CCCeEEEEEecCCcc
Q 013184 359 LKGNLGAIRSIRFTSDG-NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSP-DTEALFIGVWDRTYG 430 (448)
Q Consensus 359 ~~~~~~~v~~l~~sp~g-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fsp-dg~~L~~~~~D~~~~ 430 (448)
+.+|...|++++|+|+| ++||+|+.|++|+|||+.+++.+. ..+|.+.|++++|+| ++++|++|+.|+++.
T Consensus 265 ~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~-~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~ 337 (357)
T 4g56_B 265 SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR-DLSHRDFVTGVAWSPLDHSKFTTVGWDHKVL 337 (357)
T ss_dssp ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE-ECCCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE-ECCCCCCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence 99999999999999987 689999999999999999887654 558999999999999 799999999997643
No 14
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6e-34 Score=270.94 Aligned_cols=268 Identities=13% Similarity=0.194 Sum_probs=217.0
Q ss_pred eeeeCCC-CeEEEe-cCCeEEEEecCCCc---eeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCC
Q 013184 138 LVWSTSK-HDVYLM-SHFSIVHWSSLSSK---RTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQ 210 (448)
Q Consensus 138 l~~~~~~-~~v~~~-~~~~v~~w~~~~~~---~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~d 210 (448)
+.+.+.. ..++.+ .+++|++|+..+.. ...+..+.||..+ |.++++ ++++|++|+.|
T Consensus 23 l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~----------------v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI----------------VQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSC----------------EEEEEECTTSSEEEEEETT
T ss_pred EEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCccc----------------EEEEEECCCCCEEEEEeCC
Confidence 3444544 445554 47889999975432 2345566777664 788888 88999999999
Q ss_pred CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCC-
Q 013184 211 GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPD- 289 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~- 289 (448)
|+|++|++.+.... .....|...+.++.+ +|++. +|++|+.|++|++||++.........|...|.+++++|.
T Consensus 87 ~~v~~wd~~~~~~~---~~~~~h~~~v~~~~~--~~~~~-~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~ 160 (319)
T 3frx_A 87 KTLRLWDVATGETY---QRFVGHKSDVMSVDI--DKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNE 160 (319)
T ss_dssp SEEEEEETTTTEEE---EEEECCSSCEEEEEE--CTTSC-EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC-
T ss_pred CEEEEEECCCCCee---EEEccCCCcEEEEEE--cCCCC-EEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCC
Confidence 99999999876532 233456666777776 88876 899999999999999986555444459999999999985
Q ss_pred -----CCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCC
Q 013184 290 -----GKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLG 364 (448)
Q Consensus 290 -----~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 364 (448)
+..+++++.|+.|++||+++++....+.+|...|.+++|+|+|++|++|+.|++|++||++. .+++..+..+ .
T Consensus 161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-~ 238 (319)
T 3frx_A 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA-KKAMYTLSAQ-D 238 (319)
T ss_dssp -----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEECC-S
T ss_pred CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCC-C
Confidence 44899999999999999999999999999999999999999999999999999999999987 7777777754 6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeee--------cCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 365 AIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEI--------DFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 365 ~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~--------~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
.|.+++|+|+|.+|++++.+ .+++|++..+.....+. .|...+.+++|+|+|++|++|+.|+++.
T Consensus 239 ~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~ 311 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR 311 (319)
T ss_dssp CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEE
Confidence 89999999999999998765 59999998766554443 2456799999999999999999998754
No 15
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.6e-34 Score=295.80 Aligned_cols=268 Identities=15% Similarity=0.164 Sum_probs=220.4
Q ss_pred eeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEE
Q 013184 138 LVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELIC 215 (448)
Q Consensus 138 l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~v 215 (448)
+-+.+.+..+++++++.|++|++.++..... +.||.. .|+++++ ++++|++|+.||+|++
T Consensus 24 ~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~--~~~h~~----------------~v~~~~~spdg~~lasg~~d~~v~l 85 (611)
T 1nr0_A 24 LGNTPAGDKIQYCNGTSVYTVPVGSLTDTEI--YTEHSH----------------QTTVAKTSPSGYYCASGDVHGNVRI 85 (611)
T ss_dssp CEECTTSSEEEEEETTEEEEEETTCSSCCEE--ECCCSS----------------CEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EeeCCCCCEEEeCCCCEEEEecCCCcccCeE--ecCCCC----------------ceEEEEECCCCcEEEEEeCCCCEEE
Confidence 3456777888888888999999866544443 456655 3888888 8999999999999999
Q ss_pred EEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC----CcEEEEecCCceEEEEee-cCCCeeEEEECCCC
Q 013184 216 KYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND----CGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDG 290 (448)
Q Consensus 216 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~ 290 (448)
|++......... ....|...+.++.| +|++. +|++++.+ +.|++||. ++....+. |...|++++|+|++
T Consensus 86 Wd~~~~~~~~~~-~~~~~~~~v~~v~f--s~dg~-~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~ 159 (611)
T 1nr0_A 86 WDTTQTTHILKT-TIPVFSGPVKDISW--DSESK-RIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSR 159 (611)
T ss_dssp EESSSTTCCEEE-EEECSSSCEEEEEE--CTTSC-EEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSS
T ss_pred eECCCCcceeeE-eecccCCceEEEEE--CCCCC-EEEEEECCCCceeEEEEeeC--CCCcceecCCCCCceEEEECCCC
Confidence 999755433222 33345666777766 89987 66666654 47888884 44445555 89999999999998
Q ss_pred C-EEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEc-------cC
Q 013184 291 K-LLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLK-------GN 362 (448)
Q Consensus 291 ~-~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~ 362 (448)
. .|++++.|+.|++||..+++.+..+.+|...|.+++|+|+|++|++|+.|++|++||+.+ ++++..+. +|
T Consensus 160 ~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~-g~~~~~~~~~~~~~~~h 238 (611)
T 1nr0_A 160 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDDSLKNVAH 238 (611)
T ss_dssp SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCTTSSSCSS
T ss_pred CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC-CcEeeeecccccccccc
Confidence 6 699999999999999999999999999999999999999999999999999999999976 67777774 79
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee------------------------------------------
Q 013184 363 LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ------------------------------------------ 400 (448)
Q Consensus 363 ~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~------------------------------------------ 400 (448)
.+.|.+++|+|+|++|++++.|++|+|||+.+++....
T Consensus 239 ~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~ 318 (611)
T 1nr0_A 239 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQ 318 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcce
Confidence 99999999999999999999999999999988765432
Q ss_pred -eecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 401 -EIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 401 -~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
+.+|...|.+++|+|+|++|++++.|+++.
T Consensus 319 ~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~ 349 (611)
T 1nr0_A 319 VRYGHNKAITALSSSADGKTLFSADAEGHIN 349 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Confidence 236888999999999999999999997654
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-34 Score=272.22 Aligned_cols=264 Identities=16% Similarity=0.144 Sum_probs=202.2
Q ss_pred eEEEe-cCCeEEEEecCCCceeEEEec--CCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEEcCC
Q 013184 146 DVYLM-SHFSIVHWSSLSSKRTEVLDV--SGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKYLDQ 220 (448)
Q Consensus 146 ~v~~~-~~~~v~~w~~~~~~~~~~~~~--~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~ 220 (448)
.++.+ .++.|++|++.++....+..+ .+|.. .|.++++ ++++|++|+.||.|++|++..
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~----------------~v~~v~~sp~~~~las~s~D~~v~iw~~~~ 89 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKK----------------AIRSVAWRPHTSLLAAGSFDSTVSIWAKEE 89 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCS----------------CEEEEEECTTSSEEEEEETTSCEEEEEC--
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccC----------------CEEEEEECCCCCEEEEEeCCCcEEEEEccc
Confidence 44444 478899999876543333333 22544 4899988 789999999999999999864
Q ss_pred CC----ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC----ceEEEEee-cCCCeeEEEECCCCC
Q 013184 221 PG----VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER----FQLSKHFS-FPWPVNHTSLSPDGK 291 (448)
Q Consensus 221 ~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~----~~~~~~~~-~~~~v~~~~~sp~~~ 291 (448)
.. ...+......|...+.++.+ +|++. +|++|+.|++|++||+.. .+++..+. |...|.+++|+|++.
T Consensus 90 ~~~~~~~~~~~~~~~~h~~~V~~v~~--sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 166 (330)
T 2hes_X 90 SADRTFEMDLLAIIEGHENEVKGVAW--SNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA 166 (330)
T ss_dssp -----CCCEEEEEEC----CEEEEEE--CTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS
T ss_pred CcCccccceeEEEEcCCCCcEEEEEE--CCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC
Confidence 32 11223334456666777766 88876 899999999999999942 24566665 889999999999999
Q ss_pred EEEEEecCCcEEEEECCCC--ceeEeeecCCCcEEEEEEcCC--CCEEEEEeCCCcEEEEEccCCC-------cceEEEc
Q 013184 292 LLVIVGDNPEGILVDSQTG--KAIMPLCGHLDFSFASAWHPD--GRIFATGNQDKTCRVWDVRNLS-------KSVAVLK 360 (448)
Q Consensus 292 ~l~~~~~d~~i~i~d~~~~--~~~~~l~~h~~~v~~~~~~p~--g~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~ 360 (448)
+|++++.|+.|++||..++ +++..+.+|...|.+++|+|+ +.+|++|+.|++|++||++... .+...+.
T Consensus 167 ~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 246 (330)
T 2hes_X 167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP 246 (330)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc
Confidence 9999999999999998776 678889999999999999998 7799999999999999997521 2344455
Q ss_pred c-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeee-eecCcC-ceEEEEEcc--CCCeEEEEEecCCc
Q 013184 361 G-NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGF--EKEQ-EIDFFG-EISGMTFSP--DTEALFIGVWDRTY 429 (448)
Q Consensus 361 ~-~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~--~~~~-~~~~~~-~v~~~~fsp--dg~~L~~~~~D~~~ 429 (448)
. |...|.+++|++++ +|++++.|+.|+||+..++. .... ...|.. .|.+++|+| ++++|++|+.|+++
T Consensus 247 ~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v 321 (330)
T 2hes_X 247 DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIV 321 (330)
T ss_dssp SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEE
T ss_pred cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcE
Confidence 4 88999999999765 88999999999999988764 2222 346776 899999999 78999999999764
No 17
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2e-33 Score=270.07 Aligned_cols=263 Identities=15% Similarity=0.156 Sum_probs=209.2
Q ss_pred CCCeEEEec-CCeEEEEecCCCc-----eeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEE
Q 013184 143 SKHDVYLMS-HFSIVHWSSLSSK-----RTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELI 214 (448)
Q Consensus 143 ~~~~v~~~~-~~~v~~w~~~~~~-----~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~ 214 (448)
....++.++ +++|++|++.+.. ......+.||..+ |.++++ ++.+|++|+.||+|+
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~----------------V~~~~~~~~~~~l~s~s~D~~v~ 101 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHF----------------VSDLALSQENCFAISSSWDKTLR 101 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSC----------------EEEEEECSSTTEEEEEETTSEEE
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCc----------------eEEEEECCCCCEEEEEcCCCcEE
Confidence 334455554 7789999986542 2344556777653 888888 788999999999999
Q ss_pred EEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEe---ecCCCeeEEEECCCC-
Q 013184 215 CKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHF---SFPWPVNHTSLSPDG- 290 (448)
Q Consensus 215 vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~~- 290 (448)
+|++.+.... .....|...+.++.+ +|++. +|++++.|+.|++||+......... .|...|.+++|+|++
T Consensus 102 lwd~~~~~~~---~~~~~h~~~v~~v~~--sp~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 175 (343)
T 2xzm_R 102 LWDLRTGTTY---KRFVGHQSEVYSVAF--SPDNR-QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMK 175 (343)
T ss_dssp EEETTSSCEE---EEEECCCSCEEEEEE--CSSTT-EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCC
T ss_pred EEECCCCcEE---EEEcCCCCcEEEEEE--CCCCC-EEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccc
Confidence 9999876542 233456666777766 88887 8999999999999999854443333 377889999999986
Q ss_pred ---------CEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEcc
Q 013184 291 ---------KLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKG 361 (448)
Q Consensus 291 ---------~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 361 (448)
.+|++++.|+.|++|| ..++....+.+|...|.+++|+|+|++|++|+.|++|++||++....+...+.
T Consensus 176 ~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~- 253 (343)
T 2xzm_R 176 SANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD- 253 (343)
T ss_dssp SCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-
T ss_pred cccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-
Confidence 7999999999999999 55677788899999999999999999999999999999999965455555543
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee--eee-----------cCcCceEEEEEccCCCeEEEEEecCC
Q 013184 362 NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKE--QEI-----------DFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 362 ~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~--~~~-----------~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
+...|.+++|+|++++|+++ .|+.|++|++.++.... .+. +|...|.+++|+|+|++|++|+.|++
T Consensus 254 ~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~ 332 (343)
T 2xzm_R 254 AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGV 332 (343)
T ss_dssp CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSE
T ss_pred CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCce
Confidence 45679999999999988766 46779999998765433 222 57778999999999999999999976
Q ss_pred cc
Q 013184 429 YG 430 (448)
Q Consensus 429 ~~ 430 (448)
+.
T Consensus 333 v~ 334 (343)
T 2xzm_R 333 IR 334 (343)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 18
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.7e-33 Score=270.29 Aligned_cols=229 Identities=19% Similarity=0.274 Sum_probs=198.3
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc-
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF- 269 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~- 269 (448)
.|.++++ ++++|++|+.||.|++|++.+..... ....+...+.++.+ +|++. +|++|+.|+.|++|++.+.
T Consensus 57 ~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~--s~~~~-~l~s~~~d~~v~iw~~~~~~ 130 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAY--APSGN-YVACGGLDNICSIYNLKTRE 130 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEE--CTTSS-EEEEEETTCEEEEEETTTCS
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEE--CCCCC-EEEEEeCCCeEEEEECccCC
Confidence 3899988 78999999999999999998766432 22344555666655 88886 8999999999999999764
Q ss_pred ---eEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 013184 270 ---QLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCR 345 (448)
Q Consensus 270 ---~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~ 345 (448)
+....+. |...|.++.|+|++. +++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|+
T Consensus 131 ~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~ 209 (340)
T 1got_B 131 GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209 (340)
T ss_dssp BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 3444554 889999999998765 88999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeec--CcCceEEEEEccCCCeEEEE
Q 013184 346 VWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEID--FFGEISGMTFSPDTEALFIG 423 (448)
Q Consensus 346 iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~~v~~~~fspdg~~L~~~ 423 (448)
+||+++ +.++..+.+|...|++++|+|+|++|++|+.|+.|++||++++..+..+.. +...|.+++|+|+|++|++|
T Consensus 210 ~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 288 (340)
T 1got_B 210 LWDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288 (340)
T ss_dssp EEETTT-CSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred EEECCC-CeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEE
Confidence 999987 788899999999999999999999999999999999999998877655432 33579999999999999999
Q ss_pred EecCCc
Q 013184 424 VWDRTY 429 (448)
Q Consensus 424 ~~D~~~ 429 (448)
+.|+.+
T Consensus 289 ~~d~~i 294 (340)
T 1got_B 289 YDDFNC 294 (340)
T ss_dssp ETTSEE
T ss_pred CCCCeE
Confidence 988653
No 19
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.8e-33 Score=263.37 Aligned_cols=269 Identities=16% Similarity=0.230 Sum_probs=223.6
Q ss_pred cceeeeCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCe
Q 013184 136 RNLVWSTSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGE 212 (448)
Q Consensus 136 r~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~ 212 (448)
..+.+.+.+..++.++ ++.|++|+..++..... +.+|.. .|.++++ ++++|++|+.||.
T Consensus 27 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~--~~~h~~----------------~v~~~~~~~~~~~l~s~~~d~~ 88 (312)
T 4ery_A 27 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT--ISGHKL----------------GISDVAWSSDSNLLVSASDDKT 88 (312)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE--ECCCSS----------------CEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh--hccCCC----------------ceEEEEEcCCCCEEEEECCCCE
Confidence 3455667777676654 77899999877654443 445544 3888888 7899999999999
Q ss_pred EEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCC
Q 013184 213 LICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGK 291 (448)
Q Consensus 213 i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~ 291 (448)
|++|++.+.... .....|...+.++.+ +|++. +|++++.|+.|++||+++++.+..+. |..+|.+++|+|+++
T Consensus 89 i~vwd~~~~~~~---~~~~~~~~~v~~~~~--~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (312)
T 4ery_A 89 LKIWDVSSGKCL---KTLKGHSNYVFCCNF--NPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 162 (312)
T ss_dssp EEEEETTTCCEE---EEEECCSSCEEEEEE--CSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred EEEEECCCCcEE---EEEcCCCCCEEEEEE--cCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC
Confidence 999999876643 233345566666666 88876 89999999999999999999888887 889999999999999
Q ss_pred EEEEEecCCcEEEEECCCCceeEeee-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEE--
Q 013184 292 LLVIVGDNPEGILVDSQTGKAIMPLC-GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRS-- 368 (448)
Q Consensus 292 ~l~~~~~d~~i~i~d~~~~~~~~~l~-~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~-- 368 (448)
+|++++.|+.|++||+++++.+..+. .+...+..++|+|++++|++++.|+.|++||+++ .+++..+.+|...+.+
T Consensus 163 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~ 241 (312)
T 4ery_A 163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIF 241 (312)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT-TEEEEEECSSCCSSSCCC
T ss_pred EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEEecCCceEEEE
Confidence 99999999999999999998887764 4667899999999999999999999999999987 7888888888764332
Q ss_pred EEE-cCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEe--cCCc
Q 013184 369 IRF-TSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVW--DRTY 429 (448)
Q Consensus 369 l~~-sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~--D~~~ 429 (448)
..+ .+++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|+++.|++++. |+++
T Consensus 242 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i 305 (312)
T 4ery_A 242 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 305 (312)
T ss_dssp EEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCE
T ss_pred EEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccE
Confidence 233 467899999999999999999999999889999999999999999999999984 6543
No 20
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4e-33 Score=265.28 Aligned_cols=228 Identities=17% Similarity=0.215 Sum_probs=199.5
Q ss_pred eeEEEEe---cCCEEEEEeCCCeEEEEEcCCCCce--eEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecC
Q 013184 193 QVSTLAV---RDNLLIAGGFQGELICKYLDQPGVS--FCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDME 267 (448)
Q Consensus 193 ~i~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~ 267 (448)
.|.++++ .+++|++|+.||+|++|++...... ........|...+.++.+ +|++. +|++|+.|++|++||+.
T Consensus 19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~--s~dg~-~l~s~s~D~~v~~wd~~ 95 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL--TADGA-YALSASWDKTLRLWDVA 95 (319)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEE--CTTSS-EEEEEETTSEEEEEETT
T ss_pred eEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEE--CCCCC-EEEEEeCCCEEEEEECC
Confidence 3899988 3489999999999999999754432 223344566777777766 88876 89999999999999999
Q ss_pred CceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCC------CCEEEEEeC
Q 013184 268 RFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPD------GRIFATGNQ 340 (448)
Q Consensus 268 ~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~------g~~l~s~~~ 340 (448)
+++.+..+. |...|.+++|+|++.+|++++.|+.|++||++ ++.+..+.+|...|.+++|+|. +.+|++++.
T Consensus 96 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~ 174 (319)
T 3frx_A 96 TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174 (319)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEET
T ss_pred CCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeC
Confidence 999988887 99999999999999999999999999999986 5677888999999999999995 458999999
Q ss_pred CCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeE
Q 013184 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEAL 420 (448)
Q Consensus 341 d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L 420 (448)
|++|++||++. .+....+.+|..+|.+++|+|+|++|++|+.|+.|+|||+.+++.+..+.. ...|.+++|+|++.+|
T Consensus 175 d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l 252 (319)
T 3frx_A 175 DKMVKAWNLNQ-FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWL 252 (319)
T ss_dssp TSCEEEEETTT-TEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEE
T ss_pred CCEEEEEECCc-chhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEE
Confidence 99999999986 778888999999999999999999999999999999999999888777664 5789999999999999
Q ss_pred EEEEec
Q 013184 421 FIGVWD 426 (448)
Q Consensus 421 ~~~~~D 426 (448)
+++..+
T Consensus 253 a~~~~~ 258 (319)
T 3frx_A 253 AAATAT 258 (319)
T ss_dssp EEEETT
T ss_pred EEEcCC
Confidence 888654
No 21
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-33 Score=268.67 Aligned_cols=234 Identities=16% Similarity=0.178 Sum_probs=192.1
Q ss_pred eeEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEe-ecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC---
Q 013184 193 QVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRT-TYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER--- 268 (448)
Q Consensus 193 ~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~--- 268 (448)
.|.++++.+.+|++|+.||.|++|++..........+ ...|...+.++.+ +|++. +|++|+.|++|++|+++.
T Consensus 16 ~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~--sp~~~-~las~s~D~~v~iw~~~~~~~ 92 (330)
T 2hes_X 16 KIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAW--RPHTS-LLAAGSFDSTVSIWAKEESAD 92 (330)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEE--CTTSS-EEEEEETTSCEEEEEC-----
T ss_pred ceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEE--CCCCC-EEEEEeCCCcEEEEEcccCcC
Confidence 4899999777999999999999999987543333333 2336777777776 88876 899999999999999853
Q ss_pred ----ceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCC----CceeEeeecCCCcEEEEEEcCCCCEEEEEe
Q 013184 269 ----FQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQT----GKAIMPLCGHLDFSFASAWHPDGRIFATGN 339 (448)
Q Consensus 269 ----~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~----~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~ 339 (448)
.+++..+. |...|.+++|+|++++|++++.|+.|++||+.. .+++..+.+|...|.+++|+|++.+|++|+
T Consensus 93 ~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s 172 (330)
T 2hes_X 93 RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSS 172 (330)
T ss_dssp --CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEc
Confidence 34555565 899999999999999999999999999999943 246778889999999999999999999999
Q ss_pred CCCcEEEEEccCCC-cceEEEccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCC--------ceeeeeec-CcCc
Q 013184 340 QDKTCRVWDVRNLS-KSVAVLKGNLGAIRSIRFTSD--GNFMAMAEPADFVHVYDAKNG--------FEKEQEID-FFGE 407 (448)
Q Consensus 340 ~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~l~~sp~--g~~l~s~~~d~~v~vwd~~~~--------~~~~~~~~-~~~~ 407 (448)
.|++|++||.+... .++..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+..+ .....+.. |...
T Consensus 173 ~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~ 252 (330)
T 2hes_X 173 YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQ 252 (330)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSC
T ss_pred CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccc
Confidence 99999999997522 578889999999999999998 789999999999999998754 22333334 8889
Q ss_pred eEEEEEccCCCeEEEEEecCCcc
Q 013184 408 ISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 408 v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
|.+++|+|++ .|++++.|+++.
T Consensus 253 v~~v~~s~~~-~l~s~~~dg~v~ 274 (330)
T 2hes_X 253 VYNVAWGFNG-LIASVGADGVLA 274 (330)
T ss_dssp EEEEEECTTS-CEEEEETTSCEE
T ss_pred eEEEEEcCCC-EEEEEeCCCEEE
Confidence 9999999765 899999998764
No 22
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.7e-33 Score=285.61 Aligned_cols=263 Identities=20% Similarity=0.326 Sum_probs=220.8
Q ss_pred ceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeE
Q 013184 137 NLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGEL 213 (448)
Q Consensus 137 ~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i 213 (448)
.+.+.+....++.+ .++.|++|+..+. ++..+.+|.. .|.++++ ++++|++|+.+|.|
T Consensus 308 ~~~~~~~~~~l~t~~~d~~i~~w~~~~~---~~~~~~~~~~----------------~v~~~~~s~~g~~l~~~~~dg~v 368 (577)
T 2ymu_A 308 GVAFSPDGQTIASASDDKTVKLWNRNGQ---HLQTLTGHSS----------------SVWGVAFSPDGQTIASASDDKTV 368 (577)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSC---EEEEECCCSS----------------CEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCCC---eeEEEeCCCC----------------CEEEEEECCCCCEEEEEeCCCEE
Confidence 34455666666665 4678999996543 3344455544 4788887 88999999999999
Q ss_pred EEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCE
Q 013184 214 ICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKL 292 (448)
Q Consensus 214 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~ 292 (448)
++|+.... . ......|...+.++.+ +|++. +|++++.|+.|++|+.. ++.+..+. |...|.+++|+|++++
T Consensus 369 ~~~~~~~~-~---~~~~~~~~~~v~~~~~--s~dg~-~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~ 440 (577)
T 2ymu_A 369 KLWNRNGQ-L---LQTLTGHSSSVRGVAF--SPDGQ-TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQT 440 (577)
T ss_dssp EEEETTCC-E---EEEEECCSSCEEEEEE--CTTSS-CEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSE
T ss_pred EEEcCCCC-E---EEEecCCCCCeEEEEE--CCCCC-EEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCE
Confidence 99996432 1 2223345566667766 88886 89999999999999964 55566655 9999999999999999
Q ss_pred EEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEc
Q 013184 293 LVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFT 372 (448)
Q Consensus 293 l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~s 372 (448)
|++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++.|++|++||.. ++++..+.+|...|++++|+
T Consensus 441 l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~~~~~~~~h~~~v~~l~~s 517 (577)
T 2ymu_A 441 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFS 517 (577)
T ss_dssp EEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEEEC
T ss_pred EEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CCEEEEEeCCCCCEEEEEEc
Confidence 999999999999995 677888999999999999999999999999999999999963 78889999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 373 SDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 373 p~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
|+|++||+++.|+.|+|||. +++.+..+.+|.+.|++++|+|||++|++++.|+++.
T Consensus 518 ~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~ 574 (577)
T 2ymu_A 518 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVK 574 (577)
T ss_dssp TTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred CCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence 99999999999999999995 6788888999999999999999999999999997643
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=270.89 Aligned_cols=236 Identities=16% Similarity=0.138 Sum_probs=197.9
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
.|.++++ ++++|++|+.||.|++|++..............|...+.++++ +|++. +|++|+.|+.|++|++..+.
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~--sp~g~-~l~s~s~D~~v~iw~~~~~~ 94 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW--SPCGN-YLASASFDATTCIWKKNQDD 94 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEE--CTTSS-EEEEEETTSCEEEEEECCC-
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEE--CCCCC-EEEEEECCCcEEEEEccCCC
Confidence 4788888 8899999999999999999876533223344567777777777 89886 89999999999999987764
Q ss_pred --EEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCc---eeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 013184 271 --LSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGK---AIMPLCGHLDFSFASAWHPDGRIFATGNQDKTC 344 (448)
Q Consensus 271 --~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~---~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i 344 (448)
++..+. |..+|.+++|+|++++|++++.|+.|++||+.++. .+..+.+|...|.+++|+|++.+|++|+.|++|
T Consensus 95 ~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i 174 (345)
T 3fm0_A 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTV 174 (345)
T ss_dssp EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCE
T ss_pred eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcE
Confidence 455665 89999999999999999999999999999998764 456788999999999999999999999999999
Q ss_pred EEEEccCCC-cceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------------eeeeeec-CcCc
Q 013184 345 RVWDVRNLS-KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGF---------------EKEQEID-FFGE 407 (448)
Q Consensus 345 ~iwd~~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~---------------~~~~~~~-~~~~ 407 (448)
++||++... .+...+.+|...|.+++|+|+|++|++|+.|+.|+||+..... .+..+.+ |...
T Consensus 175 ~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 254 (345)
T 3fm0_A 175 KLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT 254 (345)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC
T ss_pred EEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc
Confidence 999997622 3557889999999999999999999999999999999963321 2223333 7788
Q ss_pred eEEEEEccCCCeEEEEEecCCcce
Q 013184 408 ISGMTFSPDTEALFIGVWDRTYGS 431 (448)
Q Consensus 408 v~~~~fspdg~~L~~~~~D~~~~~ 431 (448)
|.+++|+|++..|++++.|+++..
T Consensus 255 v~~v~~~~~~~~l~s~~~d~~i~v 278 (345)
T 3fm0_A 255 IYDIAWCQLTGALATACGDDAIRV 278 (345)
T ss_dssp EEEEEECTTTCCEEEEETTSCEEE
T ss_pred EEEEEEecCCCEEEEEeCCCeEEE
Confidence 999999999999999999987543
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.9e-32 Score=258.57 Aligned_cols=271 Identities=16% Similarity=0.186 Sum_probs=225.4
Q ss_pred cceeeeCCCCeEEEecCCeEEEEecCCCcee---EEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCC
Q 013184 136 RNLVWSTSKHDVYLMSHFSIVHWSSLSSKRT---EVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQ 210 (448)
Q Consensus 136 r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~---~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~d 210 (448)
..+.+.+....+++++++.|++|+..++... ..+...+|.. .|.++++ ++++|++|+.+
T Consensus 55 ~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~----------------~v~~~~~~~~~~~l~~~~~d 118 (337)
T 1gxr_A 55 CAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDN----------------YIRSCKLLPDGCTLIVGGEA 118 (337)
T ss_dssp CEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTS----------------BEEEEEECTTSSEEEEEESS
T ss_pred EEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCC----------------cEEEEEEcCCCCEEEEEcCC
Confidence 3455677777888888899999998764321 2222223332 5888888 78899999999
Q ss_pred CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCC
Q 013184 211 GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPD 289 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~ 289 (448)
|.|++|++.......... ...+...+.++.+ +|++. ++++++.|+.|++||+++++.+..+. |...|.+++|+|+
T Consensus 119 ~~i~~~d~~~~~~~~~~~-~~~~~~~i~~~~~--~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 194 (337)
T 1gxr_A 119 STLSIWDLAAPTPRIKAE-LTSSAPACYALAI--SPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND 194 (337)
T ss_dssp SEEEEEECCCC--EEEEE-EECSSSCEEEEEE--CTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred CcEEEEECCCCCcceeee-cccCCCceEEEEE--CCCCC-EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCC
Confidence 999999998876433333 3344555566666 88776 89999999999999999999888887 8899999999999
Q ss_pred CCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEE
Q 013184 290 GKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSI 369 (448)
Q Consensus 290 ~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l 369 (448)
+++|++++.++.|++||+++++.+..+. +...+.+++|+|++++|++++.++.|++||++. . ....+..|..+|.++
T Consensus 195 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~v~~~ 271 (337)
T 1gxr_A 195 GTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK-P-DKYQLHLHESCVLSL 271 (337)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-S-CEEEECCCSSCEEEE
T ss_pred CCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCC-C-CeEEEcCCccceeEE
Confidence 9999999999999999999999888775 788899999999999999999999999999975 3 345778899999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 370 RFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 370 ~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
+|+|+|++|++++.++.|++||+.+++... ...|...|.+++|+|++++|++++.|+.+.
T Consensus 272 ~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 331 (337)
T 1gxr_A 272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTGSGDKKAT 331 (337)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEE-EEECSSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred EECCCCCEEEEecCCCcEEEEECCCCeEEE-EecCCCcEEEEEECCCCCEEEEecCCCeEE
Confidence 999999999999999999999999988774 345788999999999999999999997653
No 25
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.6e-33 Score=263.74 Aligned_cols=234 Identities=14% Similarity=0.161 Sum_probs=192.2
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCC-CCeeEEEEeCCCcEEEEecCCc
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPS-GGIHFMASNNDCGVRDFDMERF 269 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~dg~v~iwd~~~~ 269 (448)
.|.++++ ++++|++|+.||+|++|++....... ......|...+.++.+ ++. .+.+|++|+.|++|++||++++
T Consensus 11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~-~~~l~gH~~~V~~v~~--s~~~~g~~l~s~s~D~~v~iWd~~~~ 87 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKL-IDTLTGHEGPVWRVDW--AHPKFGTILASCSYDGKVMIWKEENG 87 (297)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCC-CEEECCCSSCEEEEEE--CCGGGCSEEEEEETTTEEEEEEBSSS
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEE-EEEEccccCCeEEEEe--cCCCcCCEEEEEcCCCEEEEEEcCCC
Confidence 4888888 78999999999999999997543222 2233456677777776 543 2348999999999999999876
Q ss_pred e--EEEEee-cCCCeeEEEECCC--CCEEEEEecCCcEEEEECCCCce--eEeeecCCCcEEEEEEcCC-----------
Q 013184 270 Q--LSKHFS-FPWPVNHTSLSPD--GKLLVIVGDNPEGILVDSQTGKA--IMPLCGHLDFSFASAWHPD----------- 331 (448)
Q Consensus 270 ~--~~~~~~-~~~~v~~~~~sp~--~~~l~~~~~d~~i~i~d~~~~~~--~~~l~~h~~~v~~~~~~p~----------- 331 (448)
+ .+..+. |...|++++|+|+ +.+|++++.|+.|++||++++.. ...+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~ 167 (297)
T 2pm7_B 88 RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT 167 (297)
T ss_dssp CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----------
T ss_pred ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCC
Confidence 4 334444 8899999999997 89999999999999999987642 4567889999999999997
Q ss_pred --CCEEEEEeCCCcEEEEEccCCCc---ceEEEccCCCCeEEEEEcCCC---CEEEEEeCCCeEEEEECCCCce---eee
Q 013184 332 --GRIFATGNQDKTCRVWDVRNLSK---SVAVLKGNLGAIRSIRFTSDG---NFMAMAEPADFVHVYDAKNGFE---KEQ 400 (448)
Q Consensus 332 --g~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~l~~sp~g---~~l~s~~~d~~v~vwd~~~~~~---~~~ 400 (448)
+++|++|+.|++|++||++.... ....+.+|...|++++|+|++ ++||+++.|++|+|||+.++.. ...
T Consensus 168 ~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~ 247 (297)
T 2pm7_B 168 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTL 247 (297)
T ss_dssp --CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE
T ss_pred CCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceee
Confidence 57999999999999999986332 556788999999999999985 8999999999999999877531 122
Q ss_pred e--ecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 401 E--IDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 401 ~--~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
+ ..|...|.+++|+|+|++|++++.|+++
T Consensus 248 ~~~~~~~~~v~~~~~s~~g~~las~~~D~~v 278 (297)
T 2pm7_B 248 LKEEKFPDVLWRASWSLSGNVLALSGGDNKV 278 (297)
T ss_dssp SSSSCCSSCEEEEEECSSSCCEEEEETTSCE
T ss_pred eecccCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence 2 3577889999999999999999999875
No 26
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.9e-33 Score=268.98 Aligned_cols=238 Identities=15% Similarity=0.138 Sum_probs=193.8
Q ss_pred ccceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEE--ecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeC
Q 013184 135 LRNLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVL--DVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGF 209 (448)
Q Consensus 135 ~r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~--~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~ 209 (448)
+..+.|.+.+ .++.+ .+++|++||+.+++..... ...||.. .|.++++ ++++|++|+.
T Consensus 85 v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~----------------~V~~v~~spdg~~l~sgs~ 147 (344)
T 4gqb_B 85 VADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDD----------------IVSTVSVLSSGTQAVSGSK 147 (344)
T ss_dssp EEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSS----------------CEEEEEECTTSSEEEEEET
T ss_pred EEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCC----------------CEEEEEECCCCCEEEEEeC
Confidence 3445566664 44444 5788999999877654443 3446665 4899998 8899999999
Q ss_pred CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee---cCCCeeEEEE
Q 013184 210 QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS---FPWPVNHTSL 286 (448)
Q Consensus 210 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~ 286 (448)
||+|++|++.+... ......|...+.++.+ ++++..+|++++.|++|++||+++++....+. +...+.+++|
T Consensus 148 d~~i~iwd~~~~~~---~~~~~~h~~~V~~~~~--~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 222 (344)
T 4gqb_B 148 DICIKVWDLAQQVV---LSSYRAHAAQVTCVAA--SPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAW 222 (344)
T ss_dssp TSCEEEEETTTTEE---EEEECCCSSCEEEEEE--CSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEE
T ss_pred CCeEEEEECCCCcE---EEEEcCcCCceEEEEe--cCCCCCceeeeccccccccccccccceeeeeecceeeccceeeee
Confidence 99999999987653 3334456677777766 88887789999999999999999998877765 5567999999
Q ss_pred CC-CCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEEccCCCcceEEEccCCC
Q 013184 287 SP-DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDG-RIFATGNQDKTCRVWDVRNLSKSVAVLKGNLG 364 (448)
Q Consensus 287 sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 364 (448)
+| ++++|++|+.|+.|++||+++++++..+.+|...|.+++|+|++ ++|++|+.|++|+|||++. + .+..+.+|.+
T Consensus 223 ~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-~-~~~~~~~H~~ 300 (344)
T 4gqb_B 223 HPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-S-ELFRSQAHRD 300 (344)
T ss_dssp CSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC-C-EEEEECCCSS
T ss_pred cCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC-C-cEEEEcCCCC
Confidence 99 56788999999999999999999999999999999999999998 5899999999999999975 4 4556889999
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc
Q 013184 365 AIRSIRFTSDGN-FMAMAEPADFVHVYDAKNGF 396 (448)
Q Consensus 365 ~v~~l~~sp~g~-~l~s~~~d~~v~vwd~~~~~ 396 (448)
.|++++|+|+|+ +|++++.|++|++|++.+..
T Consensus 301 ~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 301 FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 999999999986 67789999999999998754
No 27
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.1e-33 Score=286.44 Aligned_cols=268 Identities=20% Similarity=0.281 Sum_probs=220.3
Q ss_pred ceeeeCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCC---
Q 013184 137 NLVWSTSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQ--- 210 (448)
Q Consensus 137 ~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~d--- 210 (448)
.+.+.+++..+..++ ++.|++||+.++.......+.+|.. .|.++++ ++++|++++.+
T Consensus 64 ~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~----------------~v~~v~fs~dg~~l~~~~~~~~~ 127 (611)
T 1nr0_A 64 VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG----------------PVKDISWDSESKRIAAVGEGRER 127 (611)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSS----------------CEEEEEECTTSCEEEEEECCSSC
T ss_pred EEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCC----------------ceEEEEECCCCCEEEEEECCCCc
Confidence 344567677676664 7789999986554444445555554 4889988 88899988865
Q ss_pred -CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECC
Q 013184 211 -GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSP 288 (448)
Q Consensus 211 -g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp 288 (448)
+.|++|+.... ......|...+.+++| +|++..+|++|+.|++|++||..++++...+. |...|++++|+|
T Consensus 128 ~~~v~~wd~~~~-----~~~l~gh~~~v~~v~f--~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp 200 (611)
T 1nr0_A 128 FGHVFLFDTGTS-----NGNLTGQARAMNSVDF--KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 200 (611)
T ss_dssp SEEEEETTTCCB-----CBCCCCCSSCEEEEEE--CSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT
T ss_pred eeEEEEeeCCCC-----cceecCCCCCceEEEE--CCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC
Confidence 47777774321 1223456677778777 89887679999999999999999999888887 999999999999
Q ss_pred CCCEEEEEecCCcEEEEECCCCceeEeee-------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcc------
Q 013184 289 DGKLLVIVGDNPEGILVDSQTGKAIMPLC-------GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKS------ 355 (448)
Q Consensus 289 ~~~~l~~~~~d~~i~i~d~~~~~~~~~l~-------~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~------ 355 (448)
+|++|++++.|+.|++||+.+++.+..+. +|.+.|.+++|+|+|++|++++.|++|++||+++ +++
T Consensus 201 dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~-~~~~~~~~~ 279 (611)
T 1nr0_A 201 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT-LKVEKTIPV 279 (611)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEEC
T ss_pred CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC-CceeeeecC
Confidence 99999999999999999999999988884 7999999999999999999999999999999975 332
Q ss_pred -------------------------------------eEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 013184 356 -------------------------------------VAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEK 398 (448)
Q Consensus 356 -------------------------------------~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~ 398 (448)
...+.+|...|.+++|+|+|++|++++.|+.|++||+.++...
T Consensus 280 ~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 280 GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN 359 (611)
T ss_dssp CSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Confidence 2345679999999999999999999999999999999998776
Q ss_pred eee-ecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 399 EQE-IDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 399 ~~~-~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
..+ ..|...|.+++|++++ .|+++++|+++
T Consensus 360 ~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v 390 (611)
T 1nr0_A 360 RVFPDVHATMITGIKTTSKG-DLFTVSWDDHL 390 (611)
T ss_dssp ECSSCSCSSCEEEEEECTTS-CEEEEETTTEE
T ss_pred eecccCCcceEEEEEECCCC-cEEEEEcCCce
Confidence 554 4688999999999876 68888888754
No 28
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.3e-32 Score=261.51 Aligned_cols=229 Identities=17% Similarity=0.239 Sum_probs=191.4
Q ss_pred eeEEEEe--------cCCEEEEEeCCCeEEEEEcCCCCc----eeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCc
Q 013184 193 QVSTLAV--------RDNLLIAGGFQGELICKYLDQPGV----SFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCG 260 (448)
Q Consensus 193 ~i~~l~~--------~~~~lvsg~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~ 260 (448)
.|+++++ ++++|++|+.||+|++|++..... .........|...+.++.+ +|++. ++++|+.|++
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~--~~~~~-~l~s~s~D~~ 99 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLAL--SQENC-FAISSSWDKT 99 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEE--CSSTT-EEEEEETTSE
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEE--CCCCC-EEEEEcCCCc
Confidence 3899977 778999999999999999976431 2233444566777777776 88876 8999999999
Q ss_pred EEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeee---cCCCcEEEEEEcCCC----
Q 013184 261 VRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLC---GHLDFSFASAWHPDG---- 332 (448)
Q Consensus 261 v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~---~h~~~v~~~~~~p~g---- 332 (448)
|++||+++++.+..+. |...|.+++|+|++++|++++.|+.|++||+... ....+. +|...|.+++|+|++
T Consensus 100 v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 178 (343)
T 2xzm_R 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSAN 178 (343)
T ss_dssp EEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCS
T ss_pred EEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeecccccccc
Confidence 9999999999888887 9999999999999999999999999999999843 333333 688999999999987
Q ss_pred ------CEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcC
Q 013184 333 ------RIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFG 406 (448)
Q Consensus 333 ------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~ 406 (448)
.+|++++.|++|++||.. ......+.+|...|.+++|+|+|++|++|+.|+.|+|||+...........+..
T Consensus 179 ~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 256 (343)
T 2xzm_R 179 KVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGS 256 (343)
T ss_dssp CCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSS
T ss_pred ccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCC
Confidence 799999999999999953 567788899999999999999999999999999999999955444334444567
Q ss_pred ceEEEEEccCCCeEEEEEecCC
Q 013184 407 EISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 407 ~v~~~~fspdg~~L~~~~~D~~ 428 (448)
.|.+++|+|++++|+++ .|+.
T Consensus 257 ~v~~v~~sp~~~~la~~-~d~~ 277 (343)
T 2xzm_R 257 TINQIAFNPKLQWVAVG-TDQG 277 (343)
T ss_dssp CEEEEEECSSSCEEEEE-ESSC
T ss_pred cEEEEEECCCCCEEEEE-CCCC
Confidence 79999999999887655 5654
No 29
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=276.88 Aligned_cols=278 Identities=14% Similarity=0.180 Sum_probs=228.4
Q ss_pred cccceeeeCCCCeEEEec-CCeEEEEecCCC--ceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--c-CCEEEEE
Q 013184 134 QLRNLVWSTSKHDVYLMS-HFSIVHWSSLSS--KRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--R-DNLLIAG 207 (448)
Q Consensus 134 q~r~l~~~~~~~~v~~~~-~~~v~~w~~~~~--~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~-~~~lvsg 207 (448)
.+..+.|.+....+++++ ++.|++|+..+. ....+..+.+|.. .|.++++ + +++|++|
T Consensus 69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~----------------~v~~~~~~~~~~~~l~s~ 132 (416)
T 2pm9_A 69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS----------------SVKTVKFNAKQDNVLASG 132 (416)
T ss_dssp CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS----------------CCCEEEECSSSTTBEEEE
T ss_pred ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCcc----------------ceEEEEEcCCCCCEEEEE
Confidence 345566777777777764 678999998662 2235566666665 3788888 4 7899999
Q ss_pred eCCCeEEEEEcCCCC------ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-c---
Q 013184 208 GFQGELICKYLDQPG------VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-F--- 277 (448)
Q Consensus 208 ~~dg~i~vw~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~--- 277 (448)
+.||.|++|++.... ..........+...+.++.+ +|++..+|++++.|+.|++||+++++.+..+. +
T Consensus 133 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 210 (416)
T 2pm9_A 133 GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW--NQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN 210 (416)
T ss_dssp CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE--CSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS
T ss_pred cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEe--CCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc
Confidence 999999999998775 22222223345556667766 88866699999999999999999999888887 3
Q ss_pred ---CCCeeEEEECCCC-CEEEEEecCC---cEEEEECCCC-ceeEeee-cCCCcEEEEEEcC-CCCEEEEEeCCCcEEEE
Q 013184 278 ---PWPVNHTSLSPDG-KLLVIVGDNP---EGILVDSQTG-KAIMPLC-GHLDFSFASAWHP-DGRIFATGNQDKTCRVW 347 (448)
Q Consensus 278 ---~~~v~~~~~sp~~-~~l~~~~~d~---~i~i~d~~~~-~~~~~l~-~h~~~v~~~~~~p-~g~~l~s~~~d~~i~iw 347 (448)
...|.+++|+|++ .++++++.++ .|++||++++ +.+..+. +|...|.+++|+| ++++|++++.|+.|++|
T Consensus 211 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~w 290 (416)
T 2pm9_A 211 SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290 (416)
T ss_dssp SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEE
T ss_pred cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEe
Confidence 7889999999987 6899999998 9999999986 6677788 8999999999999 99999999999999999
Q ss_pred EccCCCcceEEEccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeeeec-----------------------
Q 013184 348 DVRNLSKSVAVLKGNLGAIRSIRFTSDG-NFMAMAEPADFVHVYDAKNGFEKEQEID----------------------- 403 (448)
Q Consensus 348 d~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~s~~~d~~v~vwd~~~~~~~~~~~~----------------------- 403 (448)
|+++ .+++..+.+|...|.+++|+|++ ++|++++.|+.|+||++.++........
T Consensus 291 d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (416)
T 2pm9_A 291 NPES-AEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKE 369 (416)
T ss_dssp CSSS-CCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCS
T ss_pred eCCC-CccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccc
Confidence 9987 78889999999999999999999 8999999999999999987654322211
Q ss_pred ------------CcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 404 ------------FFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 404 ------------~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
|...+.+++|+|+|++|++++.|+++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~ 408 (416)
T 2pm9_A 370 KPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVS 408 (416)
T ss_dssp CCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBC
T ss_pred ccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEE
Confidence 566788999999999999999888754
No 30
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.5e-32 Score=264.82 Aligned_cols=278 Identities=12% Similarity=0.055 Sum_probs=210.6
Q ss_pred ccceeeeCCCCeEEEec--------CCeEEEEecCCCcee--------EEEecCCCCCCCCCCCCCcccCCcceeeEEEE
Q 013184 135 LRNLVWSTSKHDVYLMS--------HFSIVHWSSLSSKRT--------EVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLA 198 (448)
Q Consensus 135 ~r~l~~~~~~~~v~~~~--------~~~v~~w~~~~~~~~--------~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~ 198 (448)
+..+-+.+++..+..++ +++|++|+....... ..+.+.+|.. .|.+++
T Consensus 17 V~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~----------------~v~s~~ 80 (365)
T 4h5i_A 17 AYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDD----------------SPTAID 80 (365)
T ss_dssp EEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSC----------------CCCEEE
T ss_pred EEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCC----------------ceEEEE
Confidence 33445556655555543 235999997554321 1223444332 478888
Q ss_pred ecCCEEEEEe-----------CCCeEEEEEcCCCCceeEEE--ee----cCCCCceeeEEEEeCCCCCeeE-EEEeCCCc
Q 013184 199 VRDNLLIAGG-----------FQGELICKYLDQPGVSFCSR--TT----YDENAITNAVEIYNSPSGGIHF-MASNNDCG 260 (448)
Q Consensus 199 ~~~~~lvsg~-----------~dg~i~vw~~~~~~~~~~~~--~~----~~~~~~~~~v~~~~~~~~~~~l-~s~s~dg~ 260 (448)
++++.+++|. .|+.+++|++.......... .. ..+...+.+++| +|+|..++ ++++.|++
T Consensus 81 ~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f--SpDg~~la~as~~~d~~ 158 (365)
T 4h5i_A 81 ASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYI--SREGTVAAIASSKVPAI 158 (365)
T ss_dssp EETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEE--CTTSSCEEEEESCSSCE
T ss_pred eCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEE--cCCCCEEEEEECCCCCE
Confidence 8888888764 46789999987665322111 11 112233555655 99998432 34557999
Q ss_pred EEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeE--eeecCCCcEEEEEEcCCCCEEEEE
Q 013184 261 VRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIM--PLCGHLDFSFASAWHPDGRIFATG 338 (448)
Q Consensus 261 v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~--~l~~h~~~v~~~~~~p~g~~l~s~ 338 (448)
|+|||+++++++..+.|...|.+++|+|+|+++++++.+ .+.+|+..+++.+. ...+|...|.+++|+|++++++++
T Consensus 159 i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~ 237 (365)
T 4h5i_A 159 MRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAA 237 (365)
T ss_dssp EEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEE
T ss_pred EEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEE
Confidence 999999999999999999999999999999999999865 56777777777654 345688899999999999999999
Q ss_pred eCCC----cEEEEEccCCCc---ceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee-ecCcCceEE
Q 013184 339 NQDK----TCRVWDVRNLSK---SVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQE-IDFFGEISG 410 (448)
Q Consensus 339 ~~d~----~i~iwd~~~~~~---~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~ 410 (448)
+.++ .+++|++..... ....+.+|..+|++++|+|+|++||+|+.|++|+|||+.+++.+..+ .+|.+.|++
T Consensus 238 s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~ 317 (365)
T 4h5i_A 238 SLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITE 317 (365)
T ss_dssp EESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEE
T ss_pred ecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEE
Confidence 9887 688899875322 23567789999999999999999999999999999999999988775 579999999
Q ss_pred EEEccCCCeEEEEEecCCcce
Q 013184 411 MTFSPDTEALFIGVWDRTYGS 431 (448)
Q Consensus 411 ~~fspdg~~L~~~~~D~~~~~ 431 (448)
++|+|||++|++|+.|++++.
T Consensus 318 v~fSpdg~~laS~S~D~tvrv 338 (365)
T 4h5i_A 318 VTISPDSTYVASVSAANTIHI 338 (365)
T ss_dssp EEECTTSCEEEEEETTSEEEE
T ss_pred EEECCCCCEEEEEeCCCeEEE
Confidence 999999999999999987643
No 31
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.9e-32 Score=262.31 Aligned_cols=230 Identities=18% Similarity=0.221 Sum_probs=197.4
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc-
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF- 269 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~- 269 (448)
.|.++++ ++++|++|+.||+|++|+..+...... + ..+...+.++.+ +|++. .+++++.|+.+++|++...
T Consensus 66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~--~-~~~~~~v~~~~~--sp~g~-~lasg~~d~~i~v~~~~~~~ 139 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHA--V-TMPCTWVMACAY--APSGC-AIACGGLDNKCSVYPLTFDK 139 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--E-ECSSSCCCEEEE--CTTSS-EEEEESTTSEEEEEECCCCT
T ss_pred eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceE--E-ecCCCCEEEEEE--CCCCC-EEEEeeCCCCEEEEEEeccc
Confidence 3899998 789999999999999999877654322 2 234445556655 89987 8999999999999998542
Q ss_pred -----eEEEEe-ecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcC--CCCEEEEEeCC
Q 013184 270 -----QLSKHF-SFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHP--DGRIFATGNQD 341 (448)
Q Consensus 270 -----~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p--~g~~l~s~~~d 341 (448)
.....+ .|...|.+++|+|++..|++++.|+.|++||+.+++.+..+.+|...|.+++|+| +|++|++|+.|
T Consensus 140 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~D 219 (354)
T 2pbi_B 140 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD 219 (354)
T ss_dssp TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETT
T ss_pred cccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCC
Confidence 122333 3899999999999999999999999999999999999999999999999999988 57899999999
Q ss_pred CcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeec--CcCceEEEEEccCCCe
Q 013184 342 KTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEID--FFGEISGMTFSPDTEA 419 (448)
Q Consensus 342 ~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~~v~~~~fspdg~~ 419 (448)
++|++||+++ ++++..+.+|...|++++|+|+|.+|++|+.|++|++||++++..+..+.. +...+.+++|+|+|++
T Consensus 220 g~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 298 (354)
T 2pbi_B 220 KKAMVWDMRS-GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL 298 (354)
T ss_dssp SCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred CeEEEEECCC-CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCE
Confidence 9999999987 788899999999999999999999999999999999999998876655443 2347899999999999
Q ss_pred EEEEEecCCc
Q 013184 420 LFIGVWDRTY 429 (448)
Q Consensus 420 L~~~~~D~~~ 429 (448)
|++|+.|+++
T Consensus 299 l~~g~~d~~i 308 (354)
T 2pbi_B 299 LFAGYNDYTI 308 (354)
T ss_dssp EEEEETTSCE
T ss_pred EEEEECCCcE
Confidence 9999988754
No 32
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1e-32 Score=269.49 Aligned_cols=264 Identities=11% Similarity=0.100 Sum_probs=217.6
Q ss_pred CeEEEe-cCCeEEEEecCCCc----eeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--c----C---CEEEEEeCC
Q 013184 145 HDVYLM-SHFSIVHWSSLSSK----RTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--R----D---NLLIAGGFQ 210 (448)
Q Consensus 145 ~~v~~~-~~~~v~~w~~~~~~----~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~----~---~~lvsg~~d 210 (448)
..++.+ .++.|++|+..+.. ...+..+.+|.. .|.++++ + + ++|++|+.|
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~----------------~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS----------------GLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTT----------------CEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCC----------------cEEEEEEecccccCCccccEEEEEcCC
Confidence 455554 47789999987765 122333345544 3888888 6 7 899999999
Q ss_pred CeEEEEEcCCCCc--ee-EEEeecCC----CCceeeEEEEeC----CCCCee-EEEEeCCCcEEEEecCC------ceEE
Q 013184 211 GELICKYLDQPGV--SF-CSRTTYDE----NAITNAVEIYNS----PSGGIH-FMASNNDCGVRDFDMER------FQLS 272 (448)
Q Consensus 211 g~i~vw~~~~~~~--~~-~~~~~~~~----~~~~~~v~~~~~----~~~~~~-l~s~s~dg~v~iwd~~~------~~~~ 272 (448)
|.|++|++..... .. ...+..+. ...+.++.+ + |++. + |++++.||.|++||+.+ ++.+
T Consensus 91 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 91 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW--GASNDRLLS-HRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEE--ECCC----C-EEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred CCEEEEEccCCcccccccceeecccccccCCCcEEEEEE--eeccCCCCc-eEEEEEeCCCcEEEEeCCcccccccccee
Confidence 9999999987663 11 12222222 356667766 6 7776 6 99999999999999988 5544
Q ss_pred E-----Eee--------cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeec---C---CCcEEEEEEcCCCC
Q 013184 273 K-----HFS--------FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCG---H---LDFSFASAWHPDGR 333 (448)
Q Consensus 273 ~-----~~~--------~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~---h---~~~v~~~~~~p~g~ 333 (448)
. .+. +...|.+++|+|++ ++++++.++.|++||+++++.+..+.. | ...|.+++|+|+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~ 246 (397)
T 1sq9_A 168 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 246 (397)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCC
Confidence 4 442 68899999999999 999999999999999999999999998 9 99999999999999
Q ss_pred EEEEEeCC---CcEEEEEccCCCcceEEEcc-------------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 013184 334 IFATGNQD---KTCRVWDVRNLSKSVAVLKG-------------NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFE 397 (448)
Q Consensus 334 ~l~s~~~d---~~i~iwd~~~~~~~~~~~~~-------------~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~ 397 (448)
+|++++.| +.|++||+++ .+++..+.+ |...|.+++|+|+|++|++++.|+.|+|||+.+++.
T Consensus 247 ~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 247 LLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 325 (397)
T ss_dssp EEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEEecCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Confidence 99999999 9999999987 788888988 999999999999999999999999999999999998
Q ss_pred eeeee------cC---------------cCceEEEEEccCC----------CeEEEEEecCCc
Q 013184 398 KEQEI------DF---------------FGEISGMTFSPDT----------EALFIGVWDRTY 429 (448)
Q Consensus 398 ~~~~~------~~---------------~~~v~~~~fspdg----------~~L~~~~~D~~~ 429 (448)
+..+. .| ...|.+++|+|+| ++|++++.|+.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i 388 (397)
T 1sq9_A 326 ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI 388 (397)
T ss_dssp EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred eEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcE
Confidence 88888 77 8999999999998 799999999764
No 33
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.1e-31 Score=275.40 Aligned_cols=262 Identities=19% Similarity=0.333 Sum_probs=219.9
Q ss_pred ceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeE
Q 013184 137 NLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGEL 213 (448)
Q Consensus 137 ~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i 213 (448)
.+.+.+....++.+ .++.|++|+... ..+..+.+|.. .|.++++ ++++|++++.||.|
T Consensus 267 ~v~~~~d~~~l~~~~~d~~i~~w~~~~---~~~~~~~~h~~----------------~v~~~~~~~~~~~l~t~~~d~~i 327 (577)
T 2ymu_A 267 GVAFRPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSS----------------SVWGVAFSPDGQTIASASDDKTV 327 (577)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTS---CEEEEECCCSS----------------CEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEeCCC---cEEEEEecCCC----------------CeEEEEECCCCCEEEEEeCCCeE
Confidence 34455666666665 467799999533 23334556654 3788888 78999999999999
Q ss_pred EEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCE
Q 013184 214 ICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKL 292 (448)
Q Consensus 214 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~ 292 (448)
++|++..... .....+...+.++.+ +|++. .+++++.|+.|++|+.. ++.+..+. |...|.+++|+|++++
T Consensus 328 ~~w~~~~~~~----~~~~~~~~~v~~~~~--s~~g~-~l~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~ 399 (577)
T 2ymu_A 328 KLWNRNGQHL----QTLTGHSSSVWGVAF--SPDGQ-TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQT 399 (577)
T ss_dssp EEEETTSCEE----EEECCCSSCEEEEEE--CTTSS-EEEEEETTSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSC
T ss_pred EEEeCCCCee----EEEeCCCCCEEEEEE--CCCCC-EEEEEeCCCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCE
Confidence 9999865432 223345555566655 88887 89999999999999965 55566665 8999999999999999
Q ss_pred EEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEc
Q 013184 293 LVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFT 372 (448)
Q Consensus 293 l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~s 372 (448)
|++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++.|++|++||.. ++.+..+.+|...|++++|+
T Consensus 400 l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~s 476 (577)
T 2ymu_A 400 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFS 476 (577)
T ss_dssp EEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEEEC
T ss_pred EEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CCEEEEEcCCCCCEEEEEEc
Confidence 999999999999994 678888999999999999999999999999999999999974 67888999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 373 SDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 373 p~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
|+|++|++++.|+.|+|||. +++.+..+.+|...|++++|+|+|++|++++.|+.+
T Consensus 477 pd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v 532 (577)
T 2ymu_A 477 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 532 (577)
T ss_dssp TTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred CCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEE
Confidence 99999999999999999994 678888899999999999999999999999988754
No 34
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-33 Score=273.52 Aligned_cols=261 Identities=14% Similarity=0.179 Sum_probs=216.5
Q ss_pred cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCce-eEE
Q 013184 151 SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVS-FCS 227 (448)
Q Consensus 151 ~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~-~~~ 227 (448)
.++.|++|+..++.....+...+| ...|.++++ ++++|++|+.||.|++|++...... ...
T Consensus 43 ~d~~v~iw~~~~~~~~~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~ 106 (416)
T 2pm9_A 43 TDSSLELWSLLAADSEKPIASLQV----------------DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSM 106 (416)
T ss_dssp CCCCCEEEESSSGGGCSCSCCCCC----------------SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEE
T ss_pred CCCeEEEEEccCCCCCcEEEEEec----------------CCceEEEEECCCCCeEEEEccCCeEEEeecccccccccch
Confidence 366799999876543211111112 235889988 8899999999999999999873211 123
Q ss_pred EeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce------EEEEe----ecCCCeeEEEECCC-CCEEEEE
Q 013184 228 RTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ------LSKHF----SFPWPVNHTSLSPD-GKLLVIV 296 (448)
Q Consensus 228 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~------~~~~~----~~~~~v~~~~~sp~-~~~l~~~ 296 (448)
.....|...+.++.+ +|++..+|++++.|+.|++||+.+++ ....+ .|...|.+++|+|+ +.+|+++
T Consensus 107 ~~~~~h~~~v~~~~~--~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 184 (416)
T 2pm9_A 107 ARFSNHSSSVKTVKF--NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA 184 (416)
T ss_dssp EECCCSSSCCCEEEE--CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE
T ss_pred hhccCCccceEEEEE--cCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE
Confidence 344456666777776 88855599999999999999998876 33222 37889999999998 7899999
Q ss_pred ecCCcEEEEECCCCceeEeeecC------CCcEEEEEEcCCC-CEEEEEeCCC---cEEEEEccCCCcceEEEc-cCCCC
Q 013184 297 GDNPEGILVDSQTGKAIMPLCGH------LDFSFASAWHPDG-RIFATGNQDK---TCRVWDVRNLSKSVAVLK-GNLGA 365 (448)
Q Consensus 297 ~~d~~i~i~d~~~~~~~~~l~~h------~~~v~~~~~~p~g-~~l~s~~~d~---~i~iwd~~~~~~~~~~~~-~~~~~ 365 (448)
+.++.|++||+++++.+..+..| ...+.+++|+|++ .+|++++.|+ .|++||++....++..+. +|...
T Consensus 185 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 264 (416)
T 2pm9_A 185 GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG 264 (416)
T ss_dssp SSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC
T ss_pred cCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc
Confidence 99999999999999999888876 7899999999997 6999999998 999999987557778888 89999
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCC-CeEEEEEecCCc
Q 013184 366 IRSIRFTS-DGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDT-EALFIGVWDRTY 429 (448)
Q Consensus 366 v~~l~~sp-~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg-~~L~~~~~D~~~ 429 (448)
|.+++|+| ++++|++++.|+.|++||+.+++.+..+..|.+.|.+++|+|++ ++|++++.|+.+
T Consensus 265 v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i 330 (416)
T 2pm9_A 265 ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKI 330 (416)
T ss_dssp EEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEE
T ss_pred eeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcE
Confidence 99999999 99999999999999999999999999999999999999999999 899999988653
No 35
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.2e-32 Score=260.74 Aligned_cols=271 Identities=13% Similarity=0.141 Sum_probs=222.0
Q ss_pred cceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCe
Q 013184 136 RNLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGE 212 (448)
Q Consensus 136 r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~ 212 (448)
..+.+.+.+..++++ .++.|++|+..++....+..+.+|.. .|.++++ ++++|++|+.||.
T Consensus 12 ~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~----------------~v~~~~~~~~~~~l~~~~~dg~ 75 (372)
T 1k8k_C 12 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG----------------QVTGVDWAPDSNRIVTCGTDRN 75 (372)
T ss_dssp CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS----------------CEEEEEEETTTTEEEEEETTSC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCC----------------cccEEEEeCCCCEEEEEcCCCe
Confidence 445667777777777 57889999987766446666666655 3888888 7899999999999
Q ss_pred EEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce---EEEEee--cCCCeeEEEEC
Q 013184 213 LICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ---LSKHFS--FPWPVNHTSLS 287 (448)
Q Consensus 213 i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~--~~~~v~~~~~s 287 (448)
|++|++.......... ...+...+.++.+ +|++. +|++++.|+.|++||+..++ ....+. |...|.+++|+
T Consensus 76 i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~--~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 151 (372)
T 1k8k_C 76 AYVWTLKGRTWKPTLV-ILRINRAARCVRW--APNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH 151 (372)
T ss_dssp EEEEEEETTEEEEEEE-CCCCSSCEEEEEE--CTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred EEEEECCCCeeeeeEE-eecCCCceeEEEE--CCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc
Confidence 9999997765332222 2345566667766 88876 89999999999999998765 233332 78899999999
Q ss_pred CCCCEEEEEecCCcEEEEEC------------------CCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 013184 288 PDGKLLVIVGDNPEGILVDS------------------QTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDV 349 (448)
Q Consensus 288 p~~~~l~~~~~d~~i~i~d~------------------~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~ 349 (448)
|++++|++++.++.|++||+ .+++.+..+.+|...+.+++|+|++++|++++.|+.|++||+
T Consensus 152 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 152 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 99999999999999999995 467888889899999999999999999999999999999999
Q ss_pred cCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--Cce------------------------------
Q 013184 350 RNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKN--GFE------------------------------ 397 (448)
Q Consensus 350 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~--~~~------------------------------ 397 (448)
++ .+++..+..|..+|.+++|+|+|++|++| .++.|++|++.+ +..
T Consensus 232 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (372)
T 1k8k_C 232 DK-KMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA 309 (372)
T ss_dssp GG-TTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC
T ss_pred CC-CceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccc
Confidence 87 78889999999999999999999998888 899999999987 420
Q ss_pred --e------eee-ecCcCceEEEEEc-cCC---CeEEEEEecCC
Q 013184 398 --K------EQE-IDFFGEISGMTFS-PDT---EALFIGVWDRT 428 (448)
Q Consensus 398 --~------~~~-~~~~~~v~~~~fs-pdg---~~L~~~~~D~~ 428 (448)
. ..+ .+|.+.|++++|+ ++| ++|++|+.|++
T Consensus 310 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~ 353 (372)
T 1k8k_C 310 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG 353 (372)
T ss_dssp ---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE
T ss_pred ccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCc
Confidence 0 222 3789999999976 666 99999999965
No 36
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.2e-32 Score=254.54 Aligned_cols=230 Identities=17% Similarity=0.211 Sum_probs=198.5
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
.|.++++ ++++|++|+.||.|++|++...... .....|...+.++.+ +|++. +|++++.|+.|++||+++++
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~---~~~~~h~~~v~~~~~--~~~~~-~l~s~~~d~~i~vwd~~~~~ 98 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE---KTISGHKLGISDVAW--SSDSN-LLVSASDDKTLKIWDVSSGK 98 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE---EEECCCSSCEEEEEE--CTTSS-EEEEEETTSEEEEEETTTCC
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc---hhhccCCCceEEEEE--cCCCC-EEEEECCCCEEEEEECCCCc
Confidence 4899988 7899999999999999999776532 233455666667766 88876 89999999999999999999
Q ss_pred EEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 013184 271 LSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDV 349 (448)
Q Consensus 271 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~ 349 (448)
.+..+. |...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+
T Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~ 178 (312)
T 4ery_A 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178 (312)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 888887 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEE-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceE--EEEE-ccCCCeEEEEEe
Q 013184 350 RNLSKSVAVL-KGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEIS--GMTF-SPDTEALFIGVW 425 (448)
Q Consensus 350 ~~~~~~~~~~-~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~--~~~f-spdg~~L~~~~~ 425 (448)
++ .+.+..+ ..+..++..++|+|+|++|++++.|+.|++||+.+++.+..+..|...+. ...| .+++++|++|+.
T Consensus 179 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~ 257 (312)
T 4ery_A 179 AS-GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 257 (312)
T ss_dssp TT-CCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCT
T ss_pred CC-CceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECC
Confidence 87 5666555 45667899999999999999999999999999999988888877765432 2334 467899999988
Q ss_pred cCCc
Q 013184 426 DRTY 429 (448)
Q Consensus 426 D~~~ 429 (448)
|+.+
T Consensus 258 dg~i 261 (312)
T 4ery_A 258 DNLV 261 (312)
T ss_dssp TSCE
T ss_pred CCEE
Confidence 8764
No 37
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.1e-33 Score=263.65 Aligned_cols=235 Identities=14% Similarity=0.094 Sum_probs=193.8
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCC-CCeeEEEEeCCCcEEEEecCCc
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPS-GGIHFMASNNDCGVRDFDMERF 269 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~dg~v~iwd~~~~ 269 (448)
.|.++++ ++++|++|+.||+|++|++....... ......|...+.++++ ++. .+.+|++|+.|++|++||++++
T Consensus 15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~-~~~l~gH~~~V~~v~~--~~~~~~~~l~s~s~D~~v~iWd~~~~ 91 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQIL-IADLRGHEGPVWQVAW--AHPMYGNILASCSYDRKVIIWREENG 91 (316)
T ss_dssp CEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEE-EEEEECCSSCEEEEEE--CCGGGSSCEEEEETTSCEEEECCSSS
T ss_pred eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEE-EEEEcCCCccEEEEEe--CCCCCCCEEEEEECCCEEEEEECCCC
Confidence 4899988 78999999999999999998654322 2334456677778776 542 2348999999999999999886
Q ss_pred e--EEEEee-cCCCeeEEEECCC--CCEEEEEecCCcEEEEECCCCce---eEeeecCCCcEEEEEEcCC----------
Q 013184 270 Q--LSKHFS-FPWPVNHTSLSPD--GKLLVIVGDNPEGILVDSQTGKA---IMPLCGHLDFSFASAWHPD---------- 331 (448)
Q Consensus 270 ~--~~~~~~-~~~~v~~~~~sp~--~~~l~~~~~d~~i~i~d~~~~~~---~~~l~~h~~~v~~~~~~p~---------- 331 (448)
+ ....+. |...|++++|+|+ +.+|++++.|+.|++||++.+.. ...+.+|...+.+++|+|+
T Consensus 92 ~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 171 (316)
T 3bg1_A 92 TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHP 171 (316)
T ss_dssp CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------C
T ss_pred cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccc
Confidence 4 444554 8899999999997 88999999999999999987632 3456789999999999997
Q ss_pred -------CCEEEEEeCCCcEEEEEccCCC--cceEEEccCCCCeEEEEEcCCC----CEEEEEeCCCeEEEEECCCCc--
Q 013184 332 -------GRIFATGNQDKTCRVWDVRNLS--KSVAVLKGNLGAIRSIRFTSDG----NFMAMAEPADFVHVYDAKNGF-- 396 (448)
Q Consensus 332 -------g~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~l~~sp~g----~~l~s~~~d~~v~vwd~~~~~-- 396 (448)
+++|++|+.|++|++||++... .++..+.+|...|++++|+|++ ++||+|+.|++|+||++.+..
T Consensus 172 ~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~ 251 (316)
T 3bg1_A 172 SGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN 251 (316)
T ss_dssp CSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC
T ss_pred cccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcccc
Confidence 4789999999999999997522 3667788999999999999987 899999999999999987631
Q ss_pred --eeeeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 397 --EKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 397 --~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
....+..|.+.|.+++|+|+|++|++++.|+++.
T Consensus 252 ~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~ 287 (316)
T 3bg1_A 252 TWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVT 287 (316)
T ss_dssp CCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEE
T ss_pred chhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEE
Confidence 2234556889999999999999999999998753
No 38
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.4e-31 Score=261.65 Aligned_cols=267 Identities=18% Similarity=0.226 Sum_probs=222.4
Q ss_pred ceeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEE
Q 013184 137 NLVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELI 214 (448)
Q Consensus 137 ~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~ 214 (448)
-|-|+ +.+.|.++.+++|++||..+++...++.+.+|.. .|+++++ ++++|++|+.||.|+
T Consensus 110 ~l~wS-~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~----------------~V~sv~fspdg~~lasgs~Dg~v~ 172 (420)
T 4gga_A 110 LVDWS-SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGE----------------YISSVAWIKEGNYLAVGTSSAEVQ 172 (420)
T ss_dssp CEEEC-TTSEEEEEETTEEEEEETTTCCEEEEEECCSTTC----------------CEEEEEECTTSSEEEEEETTSCEE
T ss_pred eEEEC-CCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCC----------------cEEEEEECCCCCEEEEEECCCeEE
Confidence 34465 4567778889999999999998888888887765 3899999 889999999999999
Q ss_pred EEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc-eEEEEee-cCCCeeEEEECCCCCE
Q 013184 215 CKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF-QLSKHFS-FPWPVNHTSLSPDGKL 292 (448)
Q Consensus 215 vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~-~~~~v~~~~~sp~~~~ 292 (448)
+|++.+.... .....|...+.++.+ ++ .++++|+.|+.+++||.... ..+..+. |...+..+.++|++++
T Consensus 173 iWd~~~~~~~---~~~~~h~~~v~~~s~----~~-~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~ 244 (420)
T 4gga_A 173 LWDVQQQKRL---RNMTSHSARVGSLSW----NS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH 244 (420)
T ss_dssp EEETTTTEEE---EEECCCSSCEEEEEE----ET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE
T ss_pred EEEcCCCcEE---EEEeCCCCceEEEee----CC-CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCe
Confidence 9999876532 333455666666644 33 38999999999999998763 3445555 8999999999999999
Q ss_pred EEEEecCCcEEEEECCCCce----eEeeecCCCcEEEEEEcCCC-CEEEE--EeCCCcEEEEEccCCCcceEEEccCCCC
Q 013184 293 LVIVGDNPEGILVDSQTGKA----IMPLCGHLDFSFASAWHPDG-RIFAT--GNQDKTCRVWDVRNLSKSVAVLKGNLGA 365 (448)
Q Consensus 293 l~~~~~d~~i~i~d~~~~~~----~~~l~~h~~~v~~~~~~p~g-~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 365 (448)
+++++.|+.+++|+..+++. +.....|...|.+++|+|.+ .++++ |+.|++|++||+++ +.++..+..+ ..
T Consensus 245 l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t-~~~~~~~~~~-~~ 322 (420)
T 4gga_A 245 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAH-SQ 322 (420)
T ss_dssp EEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT-TEEEEEEECS-SC
T ss_pred eeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc-cccceeeccc-cc
Confidence 99999999999999987753 45667899999999999965 45555 45799999999987 7777777655 56
Q ss_pred eEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 366 IRSIRFTSDGNFMAMAE--PADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 366 v~~l~~sp~g~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
+.++.|+|+++.|++++ .|+.|+|||+.+++.+..+.+|.+.|.+++|+|+|++|++|+.|++++
T Consensus 323 v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvr 389 (420)
T 4gga_A 323 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLR 389 (420)
T ss_dssp EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEE
T ss_pred eeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEE
Confidence 88999999999998876 689999999999999999999999999999999999999999997643
No 39
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.7e-32 Score=260.35 Aligned_cols=271 Identities=13% Similarity=0.148 Sum_probs=216.1
Q ss_pred cceeeeCCCCeEEEec-----CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--c---CCEEE
Q 013184 136 RNLVWSTSKHDVYLMS-----HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--R---DNLLI 205 (448)
Q Consensus 136 r~l~~~~~~~~v~~~~-----~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~---~~~lv 205 (448)
..+.+.+....+++++ ++.|++|+..++........ +|.. .|.++++ + +++|+
T Consensus 22 ~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-~~~~----------------~v~~~~~~~~~~~~~~l~ 84 (357)
T 3i2n_A 22 FDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-EKAK----------------PIKCGTFGATSLQQRYLA 84 (357)
T ss_dssp EEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-EESS----------------CEEEEECTTCCTTTCCEE
T ss_pred EEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-cccC----------------cEEEEEEcCCCCCCceEE
Confidence 3455667666666554 77899999987765544433 3332 4899999 4 59999
Q ss_pred EEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEE----eCCCCCeeEEEEeCCCcEEEEecCCce-EEEEee-cC-
Q 013184 206 AGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIY----NSPSGGIHFMASNNDCGVRDFDMERFQ-LSKHFS-FP- 278 (448)
Q Consensus 206 sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~-~~- 278 (448)
+|+.||.|++|++...... ......|...+.++.+. ++|++. +|++++.|+.|++||+.+++ .+..+. +.
T Consensus 85 ~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 161 (357)
T 3i2n_A 85 TGDFGGNLHIWNLEAPEMP--VYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQG 161 (357)
T ss_dssp EEETTSCEEEECTTSCSSC--SEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTT
T ss_pred EecCCCeEEEEeCCCCCcc--EEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCC
Confidence 9999999999999877622 12233566667777663 367776 89999999999999999876 566665 33
Q ss_pred ---CCeeEEE----ECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcC---CCCEEEEEeCCCcEEEEE
Q 013184 279 ---WPVNHTS----LSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHP---DGRIFATGNQDKTCRVWD 348 (448)
Q Consensus 279 ---~~v~~~~----~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p---~g~~l~s~~~d~~i~iwd 348 (448)
..+.+++ |+|+++++++++.++.|++||+++++.... ..|...|.+++|+| ++.+|++++.|+.|++||
T Consensus 162 ~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d 240 (357)
T 3i2n_A 162 ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240 (357)
T ss_dssp SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEE
T ss_pred CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEe
Confidence 3788998 788999999999999999999999987554 56889999999999 999999999999999999
Q ss_pred ccCCCcceEEE-----ccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc-------------------eeeeeec
Q 013184 349 VRNLSKSVAVL-----KGNLGAIRSIRFTSDGN-FMAMAEPADFVHVYDAKNGF-------------------EKEQEID 403 (448)
Q Consensus 349 ~~~~~~~~~~~-----~~~~~~v~~l~~sp~g~-~l~s~~~d~~v~vwd~~~~~-------------------~~~~~~~ 403 (448)
++. ..++..+ .+|...|.+++|+|+|+ +|++++.||.|++||+.++. .+..+..
T Consensus 241 ~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (357)
T 3i2n_A 241 MRT-QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL 319 (357)
T ss_dssp EEE-EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC
T ss_pred CcC-CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc
Confidence 986 4444443 48999999999999998 89999999999999997642 4556777
Q ss_pred CcCceEEEEEccCCCeEE-EEEecCC
Q 013184 404 FFGEISGMTFSPDTEALF-IGVWDRT 428 (448)
Q Consensus 404 ~~~~v~~~~fspdg~~L~-~~~~D~~ 428 (448)
|.+.|.+++|+|+|++|+ +++.|+.
T Consensus 320 ~~~~v~~~~~s~~~~~l~~s~~~d~~ 345 (357)
T 3i2n_A 320 STQPISSLDWSPDKRGLCVCSSFDQT 345 (357)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred CCCCeeEEEEcCCCCeEEEEecCCCc
Confidence 999999999999999999 7888864
No 40
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-31 Score=253.13 Aligned_cols=266 Identities=15% Similarity=0.162 Sum_probs=221.8
Q ss_pred ceeeeCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeE
Q 013184 137 NLVWSTSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGEL 213 (448)
Q Consensus 137 ~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i 213 (448)
.+.+.+....+++++ ++.|++|+..++.. +..+.+|.. .|.++++ ++++|++++.||.|
T Consensus 37 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~h~~----------------~v~~~~~~~~~~~l~s~~~dg~i 98 (369)
T 3zwl_B 37 QVKYNKEGDLLFSCSKDSSASVWYSLNGER--LGTLDGHTG----------------TIWSIDVDCFTKYCVTGSADYSI 98 (369)
T ss_dssp EEEECTTSCEEEEEESSSCEEEEETTTCCE--EEEECCCSS----------------CEEEEEECTTSSEEEEEETTTEE
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEeCCCchh--hhhhhhcCC----------------cEEEEEEcCCCCEEEEEeCCCeE
Confidence 455667667677764 77899999876543 344555554 4888988 78999999999999
Q ss_pred EEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC-----CcEEEEecCCce-----------EEEEee-
Q 013184 214 ICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND-----CGVRDFDMERFQ-----------LSKHFS- 276 (448)
Q Consensus 214 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d-----g~v~iwd~~~~~-----------~~~~~~- 276 (448)
++|++.+........ +...+.++.+ +|++. .+++++.+ +.|++|++.... ....+.
T Consensus 99 ~iwd~~~~~~~~~~~----~~~~v~~~~~--~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 171 (369)
T 3zwl_B 99 KLWDVSNGQCVATWK----SPVPVKRVEF--SPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT 171 (369)
T ss_dssp EEEETTTCCEEEEEE----CSSCEEEEEE--CTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC
T ss_pred EEEECCCCcEEEEee----cCCCeEEEEE--ccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC
Confidence 999998876443222 4455566665 88887 78888888 999999987643 112222
Q ss_pred cCC--CeeEEEECCCCCEEEEEecCCcEEEEECCC-CceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCC
Q 013184 277 FPW--PVNHTSLSPDGKLLVIVGDNPEGILVDSQT-GKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLS 353 (448)
Q Consensus 277 ~~~--~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~-~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~ 353 (448)
+.. .+.+++|+|++++|++++.++.|++||+++ ++.+..+..|...|.+++|+|++++|++++.|+.|++||+++ .
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~ 250 (369)
T 3zwl_B 172 HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST-L 250 (369)
T ss_dssp CTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-C
T ss_pred CcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC-C
Confidence 444 899999999999999999999999999998 788889999999999999999999999999999999999987 6
Q ss_pred cceEEEccCCCCeEEEEEcCCCCEEEEEeCCC--------------eEEEEECCCCceeeeeecCcCceEEEEEccCCCe
Q 013184 354 KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD--------------FVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEA 419 (448)
Q Consensus 354 ~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~--------------~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~ 419 (448)
..+..+. +...+.+++|+|+++++++++.++ .|++||+.+++.+..+..|.+.|.+++|+|+|++
T Consensus 251 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 329 (369)
T 3zwl_B 251 QVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTS 329 (369)
T ss_dssp CEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSE
T ss_pred ceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCE
Confidence 7777766 778899999999999999999988 8999999999999999999999999999999999
Q ss_pred EEEEEecCCc
Q 013184 420 LFIGVWDRTY 429 (448)
Q Consensus 420 L~~~~~D~~~ 429 (448)
|++++.|+.+
T Consensus 330 l~s~~~dg~v 339 (369)
T 3zwl_B 330 YASGGEDGFI 339 (369)
T ss_dssp EEEEETTSEE
T ss_pred EEEEcCCCeE
Confidence 9999999754
No 41
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1e-31 Score=261.68 Aligned_cols=267 Identities=16% Similarity=0.150 Sum_probs=209.4
Q ss_pred cceeeeCCC-CeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cCCEEEEEeCC
Q 013184 136 RNLVWSTSK-HDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RDNLLIAGGFQ 210 (448)
Q Consensus 136 r~l~~~~~~-~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~~~lvsg~~d 210 (448)
..+.+.+.+ ..++.+ .++.|++|+..++.....+...+|.. .|.++++ ++++|++|+.|
T Consensus 77 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~----------------~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 77 TSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGD----------------AITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp EEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTC----------------BEEEEEEETTEEEEEEEEETT
T ss_pred EEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCC----------------ceeEEEeCCCCCCEEEEEeCC
Confidence 345566666 556665 46789999998888777776666655 4899988 45899999999
Q ss_pred CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCC
Q 013184 211 GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPD 289 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~ 289 (448)
|.|++|++.... .........+...+.++.+ +|++. +|++++.|+.|++||+. ++.+..+. |...|.+++|+|+
T Consensus 141 ~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~--~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 141 GATTLRDFSGSV-IQVFAKTDSWDYWYCCVDV--SVSRQ-MLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPR 215 (383)
T ss_dssp TEEEEEETTSCE-EEEEECCCCSSCCEEEEEE--ETTTT-EEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSS
T ss_pred CEEEEEECCCCc-eEEEeccCCCCCCeEEEEE--CCCCC-EEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCC
Confidence 999999998532 2111212223355666666 78876 89999999999999995 55666665 8999999999999
Q ss_pred CC-EEEEEecCCcEEEEECCC----CceeEeeecCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCCcceEEEccCC
Q 013184 290 GK-LLVIVGDNPEGILVDSQT----GKAIMPLCGHLDFSFASAWHP-DGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNL 363 (448)
Q Consensus 290 ~~-~l~~~~~d~~i~i~d~~~----~~~~~~l~~h~~~v~~~~~~p-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 363 (448)
++ +|++++.|+.|++||+++ +..+..+ +|...|.+++|+| ++++|++++.|+.|++||+++ ...+..+.+|.
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~ 293 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD-WSKPDQIIIHP 293 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB-TTSCSEEEECC
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC-Ccccccccccc
Confidence 99 999999999999999988 5666666 6999999999999 999999999999999999987 55555555442
Q ss_pred -------C----------CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeec--CcCceEEEEEccCCCeEEEEE
Q 013184 364 -------G----------AIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEID--FFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 364 -------~----------~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~~v~~~~fspdg~~L~~~~ 424 (448)
. .+..++|+|+|++ +|+.|+.|+|||+.+++.+..+.. |.+.+..++|+|+|++|++|+
T Consensus 294 ~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 294 HRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM 371 (383)
T ss_dssp BCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE
T ss_pred ccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec
Confidence 2 3344566666665 667899999999999998888876 457788889999999999996
Q ss_pred ecCC
Q 013184 425 WDRT 428 (448)
Q Consensus 425 ~D~~ 428 (448)
|+.
T Consensus 372 -d~~ 374 (383)
T 3ei3_B 372 -GFN 374 (383)
T ss_dssp -TTE
T ss_pred -CCc
Confidence 743
No 42
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-32 Score=268.68 Aligned_cols=243 Identities=19% Similarity=0.285 Sum_probs=203.7
Q ss_pred eeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEE
Q 013184 165 RTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEI 242 (448)
Q Consensus 165 ~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~ 242 (448)
......+.||..+ |+++++ ++++|++|+.||+|++|++.+.... .....|...+.++.+
T Consensus 56 ~~~~~~l~gH~~~----------------V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~---~~~~~h~~~v~~~~~ 116 (380)
T 3iz6_a 56 LVCCRTLQGHSGK----------------VYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT---HAIKLHCPWVMECAF 116 (380)
T ss_dssp CEEEEEECCCSSC----------------EEEEEECTTSSCEEEEETTSEEEEEETTTTEEE---EEEECCCTTCCCCEE
T ss_pred eEEeecccccccE----------------EEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc---eEEecCCCCEEEEEE
Confidence 3445567788764 899998 7899999999999999999876543 223345555666666
Q ss_pred EeCCCCCeeEEEEeCCCcEEEEecCCce-------EEEEee-cCCCeeEEEECCC-CCEEEEEecCCcEEEEECCCCcee
Q 013184 243 YNSPSGGIHFMASNNDCGVRDFDMERFQ-------LSKHFS-FPWPVNHTSLSPD-GKLLVIVGDNPEGILVDSQTGKAI 313 (448)
Q Consensus 243 ~~~~~~~~~l~s~s~dg~v~iwd~~~~~-------~~~~~~-~~~~v~~~~~sp~-~~~l~~~~~d~~i~i~d~~~~~~~ 313 (448)
+|++. +|++|+.|+.+++|++.+.. ....+. |...|.++.|+|+ +..|++++.|+.|++||+.+++.+
T Consensus 117 --s~~g~-~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~ 193 (380)
T 3iz6_a 117 --APNGQ-SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI 193 (380)
T ss_dssp --CTTSS-EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE
T ss_pred --CCCCC-EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE
Confidence 89887 89999999999999986532 223333 8889999999996 567999999999999999999988
Q ss_pred Eee-----ecCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 013184 314 MPL-----CGHLDFSFASAWHP-DGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFV 387 (448)
Q Consensus 314 ~~l-----~~h~~~v~~~~~~p-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v 387 (448)
..+ .+|...|.+++|+| ++++|++|+.|++|++||++....++..+.+|.+.|++++|+|+|++|++|+.|++|
T Consensus 194 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i 273 (380)
T 3iz6_a 194 SIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC 273 (380)
T ss_dssp EEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCE
T ss_pred EEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeE
Confidence 877 67999999999987 889999999999999999986578889999999999999999999999999999999
Q ss_pred EEEECCCCceeeeeecCc-------CceEEEEEccCCCeEEEEEecCCc
Q 013184 388 HVYDAKNGFEKEQEIDFF-------GEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 388 ~vwd~~~~~~~~~~~~~~-------~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
+|||++++..+..+..+. ..|++++|+|+|++|++|+.|+.+
T Consensus 274 ~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i 322 (380)
T 3iz6_a 274 RLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC 322 (380)
T ss_dssp EEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCE
T ss_pred EEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCE
Confidence 999999998776654432 348999999999999999888654
No 43
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-32 Score=266.52 Aligned_cols=243 Identities=14% Similarity=0.114 Sum_probs=189.0
Q ss_pred ccceeeeCCCCeEEEecCCeEEEEecCCCceeEEE--ecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCC
Q 013184 135 LRNLVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVL--DVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQ 210 (448)
Q Consensus 135 ~r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~--~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~d 210 (448)
+..+.|.+.+..+..+.+++|++||+.+++...+. ...+|.. .|.++++ ++++|++|+.|
T Consensus 97 V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~----------------~V~~v~~spdg~~l~sgs~d 160 (357)
T 4g56_B 97 VTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDD----------------IVKTLSVFSDGTQAVSGGKD 160 (357)
T ss_dssp EEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSS----------------CEEEEEECSSSSEEEEEETT
T ss_pred EEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCC----------------CEEEEEECCCCCEEEEEeCC
Confidence 34566777766555557888999998765433221 2234443 4899988 88999999999
Q ss_pred CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee---cCCCeeEEEEC
Q 013184 211 GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS---FPWPVNHTSLS 287 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~s 287 (448)
|.|++|++.+.... .....|...+.++.+ ++++..++++++.|+.|++||+++++....+. +...+.+++|+
T Consensus 161 g~v~iwd~~~~~~~---~~~~~h~~~v~~v~~--s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~s 235 (357)
T 4g56_B 161 FSVKVWDLSQKAVL---KSYNAHSSEVNCVAA--CPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWH 235 (357)
T ss_dssp SCEEEEETTTTEEE---EEECCCSSCEEEEEE--CTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEEC
T ss_pred CeEEEEECCCCcEE---EEEcCCCCCEEEEEE--ccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhh
Confidence 99999999876532 233456666777766 88887789999999999999999988766554 56789999999
Q ss_pred CC-CCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEEccCCCcceEEEccCCCC
Q 013184 288 PD-GKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDG-RIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGA 365 (448)
Q Consensus 288 p~-~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 365 (448)
|+ +.+|++++.|+.|++||+++++.+..+.+|...|.+++|+|++ ++|++|+.|++|+|||+++ ++++. ..+|.+.
T Consensus 236 p~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~~~~-~~~H~~~ 313 (357)
T 4g56_B 236 PEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-SEVFR-DLSHRDF 313 (357)
T ss_dssp TTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-CEEEE-ECCCSSC
T ss_pred hcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-CcEeE-ECCCCCC
Confidence 96 5688999999999999999999999999999999999999987 5899999999999999976 55554 4579999
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeee
Q 013184 366 IRSIRFTS-DGNFMAMAEPADFVHVYDAKNGFEKEQ 400 (448)
Q Consensus 366 v~~l~~sp-~g~~l~s~~~d~~v~vwd~~~~~~~~~ 400 (448)
|++++|+| ++++|++++.|+.|++|++.+......
T Consensus 314 V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~ 349 (357)
T 4g56_B 314 VTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTEN 349 (357)
T ss_dssp EEEEEECSSSTTEEEEEETTSCEEEEECC-------
T ss_pred EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc
Confidence 99999999 799999999999999999977544433
No 44
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.8e-31 Score=280.38 Aligned_cols=265 Identities=17% Similarity=0.209 Sum_probs=211.1
Q ss_pred eeCCCCe-EEEe-cCCeEEEEecCCCc---eeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCe
Q 013184 140 WSTSKHD-VYLM-SHFSIVHWSSLSSK---RTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGE 212 (448)
Q Consensus 140 ~~~~~~~-v~~~-~~~~v~~w~~~~~~---~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~ 212 (448)
+.+.... ++.+ .+++|++|++.+.. ......+.||.. .|.++++ ++++|++|+.||.
T Consensus 390 ~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~----------------~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 390 TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH----------------FVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp CCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSS----------------CEEEEEECTTSSEEEEEETTSE
T ss_pred ecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCC----------------cEEEEEECCCCCEEEEEeCCCc
Confidence 3344433 4444 47889999986532 223345566665 3888888 8899999999999
Q ss_pred EEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEe----ecCCCeeEEEECC
Q 013184 213 LICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHF----SFPWPVNHTSLSP 288 (448)
Q Consensus 213 i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~----~~~~~v~~~~~sp 288 (448)
|++|++.+.... .....|...+.++++ +|++. +|++|+.|++|++||+......... .|...|.+++|+|
T Consensus 454 v~vwd~~~~~~~---~~~~~h~~~v~~~~~--s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 454 LRLWDLAAGVST---RRFVGHTKDVLSVAF--SLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp EEEEETTTTEEE---EEEECCSSCEEEEEE--CTTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS
T ss_pred EEEEECCCCcce---eEEeCCCCCEEEEEE--eCCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC
Confidence 999999876432 333456666677766 88876 8999999999999998765444332 2677899999999
Q ss_pred CC--CEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCe
Q 013184 289 DG--KLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAI 366 (448)
Q Consensus 289 ~~--~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v 366 (448)
++ ..+++++.|+.|++||+++++....+.+|...|.+++|+|+|++|++|+.|++|++||+++ ++++..+.. ...|
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~-~~~~~~~~~-~~~v 605 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE-GKKLYSLEA-NSVI 605 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT-TEEEECCBC-SSCE
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CceEEEecC-CCcE
Confidence 76 6899999999999999999999999999999999999999999999999999999999987 666666654 4679
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCc-------------------CceEEEEEccCCCeEEEEEecC
Q 013184 367 RSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFF-------------------GEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 367 ~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-------------------~~v~~~~fspdg~~L~~~~~D~ 427 (448)
.+++|+|++.+|++++ ++.|+|||+.++..+..+..+. ..+++++|+|+|++|++|+.|+
T Consensus 606 ~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 606 HALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp EEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 9999999999888776 4569999999987765543211 1378999999999999999997
Q ss_pred Cc
Q 013184 428 TY 429 (448)
Q Consensus 428 ~~ 429 (448)
++
T Consensus 685 ~i 686 (694)
T 3dm0_A 685 VI 686 (694)
T ss_dssp EE
T ss_pred eE
Confidence 54
No 45
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.6e-32 Score=262.82 Aligned_cols=260 Identities=14% Similarity=0.151 Sum_probs=210.8
Q ss_pred ecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--c----CCEEEEEeCCCeEEEEEcCCCCc
Q 013184 150 MSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--R----DNLLIAGGFQGELICKYLDQPGV 223 (448)
Q Consensus 150 ~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~----~~~lvsg~~dg~i~vw~~~~~~~ 223 (448)
++++.|++|+..++.....+... ..+ .....|.++++ + +.+|++|+.||.|++|++.+...
T Consensus 41 ~~~~~v~vw~~~~~~~~~~~~~~--~~~-----------~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~ 107 (366)
T 3k26_A 41 VGSNRVTLYECHSQGEIRLLQSY--VDA-----------DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC 107 (366)
T ss_dssp EETTEEEEEEECGGGCEEEEEEE--ECS-----------CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE
T ss_pred CCCCEEEEEEcCCCcEEEeeeec--ccc-----------CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE
Confidence 45778999998766554433221 111 01235888888 4 56999999999999999987654
Q ss_pred eeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEe----ecCCCeeEEEECCCCCEEEEEecC
Q 013184 224 SFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHF----SFPWPVNHTSLSPDGKLLVIVGDN 299 (448)
Q Consensus 224 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d 299 (448)
. .....+...+.++.+ +|.+..+|++++.||.|++||+.+++.+..+ .|...|.+++|+|++++|++++.|
T Consensus 108 ~---~~~~~~~~~i~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 182 (366)
T 3k26_A 108 I---KHYVGHGNAINELKF--HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 182 (366)
T ss_dssp E---EEEESCCSCEEEEEE--CSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT
T ss_pred e---eeecCCCCcEEEEEE--CCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCC
Confidence 3 223356666777766 8833448999999999999999999988887 388999999999999999999999
Q ss_pred CcEEEEECCCCceeEeeec----------------------------CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 013184 300 PEGILVDSQTGKAIMPLCG----------------------------HLDFSFASAWHPDGRIFATGNQDKTCRVWDVRN 351 (448)
Q Consensus 300 ~~i~i~d~~~~~~~~~l~~----------------------------h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~ 351 (448)
+.|++||+++++.+..+.. |...|.+++|+ +++|++++.|+.|++||+++
T Consensus 183 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 183 HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp SCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESS
T ss_pred CCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCC
Confidence 9999999998765544433 99999999998 78999999999999999976
Q ss_pred CC-------------cceEEEccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCcee----eeeecC--cCceEE
Q 013184 352 LS-------------KSVAVLKGNLGAIRSIRFTSD--GNFMAMAEPADFVHVYDAKNGFEK----EQEIDF--FGEISG 410 (448)
Q Consensus 352 ~~-------------~~~~~~~~~~~~v~~l~~sp~--g~~l~s~~~d~~v~vwd~~~~~~~----~~~~~~--~~~v~~ 410 (448)
.. ..+..+..|...|.+++|+|+ |++|++|+.||.|++||+.+++.. ..+..| .+.|.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 340 (366)
T 3k26_A 261 MEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQ 340 (366)
T ss_dssp TTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEE
T ss_pred ccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEE
Confidence 32 236778889999999999999 999999999999999999987643 355666 689999
Q ss_pred EEEccCCCeEEEEEecCCc
Q 013184 411 MTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 411 ~~fspdg~~L~~~~~D~~~ 429 (448)
++|+|+|++|++++.|+.+
T Consensus 341 ~~~s~~~~~l~s~~~dg~i 359 (366)
T 3k26_A 341 TSFSRDSSILIAVCDDASI 359 (366)
T ss_dssp EEECTTSSEEEEEETTSEE
T ss_pred EEeCCCCCeEEEEeCCCEE
Confidence 9999999999999999653
No 46
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2e-30 Score=247.44 Aligned_cols=267 Identities=16% Similarity=0.220 Sum_probs=211.6
Q ss_pred eeeeCCC-CeEEEe-cCCeEEEEecCCCce---eEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCC
Q 013184 138 LVWSTSK-HDVYLM-SHFSIVHWSSLSSKR---TEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQ 210 (448)
Q Consensus 138 l~~~~~~-~~v~~~-~~~~v~~w~~~~~~~---~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~d 210 (448)
+.+.|.. ..++.+ .|++|++|++.+... .....+.||..+ |.++++ ++++|++|+.|
T Consensus 44 v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~----------------V~~~~~s~dg~~l~s~~~d 107 (340)
T 4aow_A 44 IATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF----------------VSDVVISSDGQFALSGSWD 107 (340)
T ss_dssp EEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSC----------------EEEEEECTTSSEEEEEETT
T ss_pred EEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCC----------------EEEEEECCCCCEEEEEccc
Confidence 4455654 445555 478899999865432 344566777653 888888 88999999999
Q ss_pred CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee--cCCCeeEEEECC
Q 013184 211 GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS--FPWPVNHTSLSP 288 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp 288 (448)
|.|++|+......... ...+........ +.+.+. .|++++.|+.+++||+.......... |...+.+++|++
T Consensus 108 ~~i~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 181 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRR---FVGHTKDVLSVA--FSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 181 (340)
T ss_dssp SEEEEEETTTTEEEEE---EECCSSCEEEEE--ECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECS
T ss_pred ccceEEeecccceeee---ecCCCCceeEEE--EeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEcc
Confidence 9999999877654322 223333333443 367765 89999999999999998765443332 788999999988
Q ss_pred CC--CEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCe
Q 013184 289 DG--KLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAI 366 (448)
Q Consensus 289 ~~--~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v 366 (448)
++ .++++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++|+.|++|++||++. .+++..+..+ ..|
T Consensus 182 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~-~~v 259 (340)
T 4aow_A 182 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE-GKHLYTLDGG-DII 259 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEECS-SCE
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc-CceeeeecCC-ceE
Confidence 54 5788999999999999999999999999999999999999999999999999999999987 6777777654 679
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee---------ecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 367 RSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQE---------IDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 367 ~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~---------~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
.+++|+|++.+++ ++.|+.|+|||++++.....+ ..|...|++++|+|+|++|++|+.|+++
T Consensus 260 ~~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v 330 (340)
T 4aow_A 260 NALCFSPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLV 330 (340)
T ss_dssp EEEEECSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCE
T ss_pred EeeecCCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 9999999886654 556899999999887655443 2577899999999999999999999764
No 47
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.7e-31 Score=256.50 Aligned_cols=229 Identities=21% Similarity=0.264 Sum_probs=192.2
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecC-----------------CCCceeeEEEEeCCCCCeeEE
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYD-----------------ENAITNAVEIYNSPSGGIHFM 253 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~~~~~~~l~ 253 (448)
.|.++++ ++++|++|+ ++.+++|++.+..... .+..+ +...+.++++ +|++. +|+
T Consensus 66 ~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--s~dg~-~l~ 139 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA--RLSDDSAANKDPENLNTSSSPSSDLYIRSVCF--SPDGK-FLA 139 (393)
T ss_dssp CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE--EECC-----------------CCCCBEEEEEE--CTTSS-EEE
T ss_pred EEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE--EecCccccccccccccccccCCCceeEEEEEE--CCCCC-EEE
Confidence 4788888 889999876 7899999998766432 11111 1112445555 89887 899
Q ss_pred EEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcC-C
Q 013184 254 ASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHP-D 331 (448)
Q Consensus 254 s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p-~ 331 (448)
+|+.|+.|++||+.+++.+..+. |...|.+++|+|++++|++++.|+.|++||+++++....+. +...+.+++|+| +
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGD 218 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTT
T ss_pred EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCC
Confidence 99999999999999999888887 99999999999999999999999999999999999888776 567899999999 8
Q ss_pred CCEEEEEeCCCcEEEEEccCCCcceEEE-------ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------
Q 013184 332 GRIFATGNQDKTCRVWDVRNLSKSVAVL-------KGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG--------- 395 (448)
Q Consensus 332 g~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~--------- 395 (448)
+++|++|+.|++|++||+++ +..+..+ .+|...|.+++|+|+|++|++|+.|+.|++||+.+.
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 297 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297 (393)
T ss_dssp CCEEEEEETTSCEEEEETTT-CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred CCEEEEEcCCCcEEEEECCC-CcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence 99999999999999999986 6666555 578899999999999999999999999999999763
Q ss_pred ---ceeeeeecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 396 ---FEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 396 ---~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
.....+.+|...|.+++|+|++++|++|+.|+++
T Consensus 298 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v 334 (393)
T 1erj_A 298 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 334 (393)
T ss_dssp ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEE
T ss_pred CCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeE
Confidence 2345667899999999999999999999988653
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-31 Score=261.86 Aligned_cols=269 Identities=14% Similarity=0.126 Sum_probs=225.0
Q ss_pred cccceeeeCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCC
Q 013184 134 QLRNLVWSTSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQ 210 (448)
Q Consensus 134 q~r~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~d 210 (448)
.+..+.+.+....+++++ ++.|++|+ .++ ..+..+.+|.. .|.++++ ++++|++++.|
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~--~~~~~~~~~~~----------------~v~~~~~~~~~~~l~~~~~d 170 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTG--ALLNVLNFHRA----------------PIVSVKWNKDGTHIISMDVE 170 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE-TTS--CEEEEECCCCS----------------CEEEEEECTTSSEEEEEETT
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe-CCC--CeeeeccCCCc----------------cEEEEEECCCCCEEEEEecC
Confidence 345566777777777764 67899999 333 34444555544 4888888 78999999999
Q ss_pred CeEEEEEcCCCCceeEEEeecCCCCc---------------eeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEe
Q 013184 211 GELICKYLDQPGVSFCSRTTYDENAI---------------TNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHF 275 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 275 (448)
|.|++|++.+..... .+. .+... +.++.+ ++++ .+++++.++.|++||+.+++.+..+
T Consensus 171 ~~i~iwd~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~ 243 (425)
T 1r5m_A 171 NVTILWNVISGTVMQ--HFE-LKETGGSSINAENHSGDGSLGVDVEW--VDDD--KFVIPGPKGAIFVYQITEKTPTGKL 243 (425)
T ss_dssp CCEEEEETTTTEEEE--EEC-CC---------------CCCBSCCEE--EETT--EEEEECGGGCEEEEETTCSSCSEEE
T ss_pred CeEEEEECCCCcEEE--Eee-ccccCccceeeccccCCcceeeEEEE--cCCC--EEEEEcCCCeEEEEEcCCCceeeee
Confidence 999999998765332 222 12221 455555 5554 6899999999999999998888777
Q ss_pred e-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCc
Q 013184 276 S-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSK 354 (448)
Q Consensus 276 ~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~ 354 (448)
. |..+|.+++|+|++++|++++.++.|++||+.+++.+..+.+|...+.+++|+|++ ++++++.|+.|++||+++ .+
T Consensus 244 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~ 321 (425)
T 1r5m_A 244 IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ-NT 321 (425)
T ss_dssp CCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT-TE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC-Cc
Confidence 6 88999999999999999999999999999999999999999999999999999999 999999999999999987 78
Q ss_pred ceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--------------------eeeeeecCcC--ceEEEE
Q 013184 355 SVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGF--------------------EKEQEIDFFG--EISGMT 412 (448)
Q Consensus 355 ~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~--------------------~~~~~~~~~~--~v~~~~ 412 (448)
.+..+..|..+|.+++|+|+|++|++++.+|.|++||+.++. .+..+..|.. .|.+++
T Consensus 322 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 401 (425)
T 1r5m_A 322 LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLS 401 (425)
T ss_dssp EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEE
T ss_pred EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEE
Confidence 888899999999999999999999999999999999999887 7777888866 999999
Q ss_pred EccCCCeEEEEEecCCcc
Q 013184 413 FSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 413 fspdg~~L~~~~~D~~~~ 430 (448)
|+|++++|++++.|+.+.
T Consensus 402 ~s~~~~~l~~~~~dg~i~ 419 (425)
T 1r5m_A 402 WNCAGNKISVAYSLQEGS 419 (425)
T ss_dssp ECTTSSEEEEEESSSCCE
T ss_pred ccCCCceEEEEecCceEE
Confidence 999999999999997643
No 49
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.8e-31 Score=249.97 Aligned_cols=266 Identities=14% Similarity=0.160 Sum_probs=212.7
Q ss_pred eeeeCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEE
Q 013184 138 LVWSTSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELI 214 (448)
Q Consensus 138 l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~ 214 (448)
+.+++++..++++. .+.+..|... .....+...+|.. .|.++++ ++++|++++ +|.|+
T Consensus 15 ~~~s~dg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~----------------~v~~~~~~~~~~~l~~~~-dg~i~ 75 (337)
T 1gxr_A 15 FHVTADGQMQPVPFPPDALIGPGIP--RHARQINTLNHGE----------------VVCAVTISNPTRHVYTGG-KGCVK 75 (337)
T ss_dssp EEECSSSCEEECCCCTTSSSSTTCC--SEEEEEEEECCSS----------------CCCEEEECSSSSEEEEEC-BSEEE
T ss_pred EEECCCCCEEEeecCCCcEeccccC--CccccceeccCCC----------------ceEEEEEecCCcEEEEcC-CCeEE
Confidence 44556666555543 3345555432 2333333334544 3788888 788999998 99999
Q ss_pred EEEcCCCCceeEEEe--ecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce--EEEEee-cCCCeeEEEECCC
Q 013184 215 CKYLDQPGVSFCSRT--TYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ--LSKHFS-FPWPVNHTSLSPD 289 (448)
Q Consensus 215 vw~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~-~~~~v~~~~~sp~ 289 (448)
+|++........... ...+...+.++.+ +|++. +|++++.|+.|++||+.+++ ....+. +...|.+++|+|+
T Consensus 76 iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 152 (337)
T 1gxr_A 76 VWDISHPGNKSPVSQLDCLNRDNYIRSCKL--LPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152 (337)
T ss_dssp EEETTSTTCCSCSEEEECSCTTSBEEEEEE--CTTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT
T ss_pred EEECCCCCceeeeecccccCCCCcEEEEEE--cCCCC-EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCC
Confidence 999987653221111 1245666667766 88876 89999999999999999877 444444 7889999999999
Q ss_pred CCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEE
Q 013184 290 GKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSI 369 (448)
Q Consensus 290 ~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l 369 (448)
++++++++.++.|++||+++++.+..+.+|...+.+++|+|++++|++++.|+.|++||+++ .+.+..+. +...+.++
T Consensus 153 ~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~-~~~~v~~~ 230 (337)
T 1gxr_A 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE-GRQLQQHD-FTSQIFSL 230 (337)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEE-CSSCEEEE
T ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCC-CceEeeec-CCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999986 56665554 77889999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 370 RFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 370 ~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
+|+|+|++|++++.++.|++||+.++.. ..+..|.+.|.+++|+|++++|++++.|+.
T Consensus 231 ~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 288 (337)
T 1gxr_A 231 GYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNL 288 (337)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCc
Confidence 9999999999999999999999988764 466789999999999999999999998864
No 50
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-30 Score=254.74 Aligned_cols=259 Identities=14% Similarity=0.147 Sum_probs=214.8
Q ss_pred CCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEEcCCC
Q 013184 144 KHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKYLDQP 221 (448)
Q Consensus 144 ~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~ 221 (448)
...+..+.++.|++|+..++......... |.. .|.++++ ++++|++|+.||.|++|++.+.
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~-~~~----------------~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAETD-EST----------------YVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEECC-TTC----------------CEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeeecC-CCC----------------CEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 34455557889999999887776666543 222 4889988 8899999999999999999876
Q ss_pred CceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecC-CceEEEEee-cCCCeeEEEECCCCCEEEEEecC
Q 013184 222 GVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDME-RFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDN 299 (448)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d 299 (448)
... .....|...+.++.+ + + ..+++++.||.|++||+. ....+..+. |...|.+++|+|++++|++++.|
T Consensus 167 ~~~---~~~~~~~~~v~~~~~--~--~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 238 (401)
T 4aez_A 167 TKL---RTMAGHQARVGCLSW--N--R-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND 238 (401)
T ss_dssp CEE---EEECCCSSCEEEEEE--E--T-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred eEE---EEecCCCCceEEEEE--C--C-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC
Confidence 643 233356666777766 2 3 389999999999999998 455566665 89999999999999999999999
Q ss_pred CcEEEEECCCCceeEeeecCCCcEEEEEEcCCC-CEEEEEe--CCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCC
Q 013184 300 PEGILVDSQTGKAIMPLCGHLDFSFASAWHPDG-RIFATGN--QDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGN 376 (448)
Q Consensus 300 ~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g-~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~ 376 (448)
+.|++||+++++.+..+.+|...|.+++|+|++ .++++++ .|+.|++||+++ +.++..+. +...|.+++|+|+|+
T Consensus 239 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~-~~~~v~~~~~s~~~~ 316 (401)
T 4aez_A 239 NVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVD-AGSQVTSLIWSPHSK 316 (401)
T ss_dssp SCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT-CCEEEEEE-CSSCEEEEEECSSSS
T ss_pred CeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC-CCEEEEEe-CCCcEEEEEECCCCC
Confidence 999999999999999999999999999999976 4666665 799999999987 67777775 667899999999999
Q ss_pred EEEEEe--CCCeEEEEECCCCceee--eeecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 377 FMAMAE--PADFVHVYDAKNGFEKE--QEIDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 377 ~l~s~~--~d~~v~vwd~~~~~~~~--~~~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
+|++++ .+|.|+|||+.++.... .+..|.+.|.+++|+|+|++|++++.|+.+
T Consensus 317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i 373 (401)
T 4aez_A 317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENL 373 (401)
T ss_dssp EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEE
T ss_pred eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 999954 89999999999865543 356899999999999999999999998653
No 51
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.5e-32 Score=267.06 Aligned_cols=268 Identities=10% Similarity=0.073 Sum_probs=210.0
Q ss_pred ceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEE
Q 013184 137 NLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELIC 215 (448)
Q Consensus 137 ~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~v 215 (448)
.+.+.+....++++ .++.|++|+..+...... +.++ ....+..+..++++|++|+.||.|++
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~--~~~~---------------~~~~~~~~~~~~~~l~~~~~dg~i~i 123 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM--LKRA---------------DYTAVDTAKLQMRRFILGTTEGDIKV 123 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETTTT--SCSC---------------CEEEEEEECSSSCEEEEEETTSCEEE
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccceeeE--EecC---------------CceEEEEEecCCCEEEEEECCCCEEE
Confidence 45566777777776 478899999765322111 1111 00112223338999999999999999
Q ss_pred EEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEE
Q 013184 216 KYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLV 294 (448)
Q Consensus 216 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~ 294 (448)
|++..... ......|...+.++.+ +|++. +|++++.|+.|++||+.+++.+..+. |...|.+++|+|++++|+
T Consensus 124 wd~~~~~~---~~~~~~h~~~v~~~~~--~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 197 (420)
T 3vl1_A 124 LDSNFNLQ---REIDQAHVSEITKLKF--FPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 197 (420)
T ss_dssp ECTTSCEE---EEETTSSSSCEEEEEE--CTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEE
T ss_pred EeCCCcce---eeecccccCccEEEEE--CCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEE
Confidence 99875532 3344466777777776 88876 89999999999999999998888887 999999999999999999
Q ss_pred EEecCCcEEEEECCCCceeEeeec---CCCcEEEEE---------------------EcCCCCEEEEEeCCCcEEEEEcc
Q 013184 295 IVGDNPEGILVDSQTGKAIMPLCG---HLDFSFASA---------------------WHPDGRIFATGNQDKTCRVWDVR 350 (448)
Q Consensus 295 ~~~~d~~i~i~d~~~~~~~~~l~~---h~~~v~~~~---------------------~~p~g~~l~s~~~d~~i~iwd~~ 350 (448)
+++.|+.|++||+++++.+..+.. |...+.+++ |+|++++|++|+.||.|++||++
T Consensus 198 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 277 (420)
T 3vl1_A 198 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVF 277 (420)
T ss_dssp EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETT
T ss_pred EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECC
Confidence 999999999999999999988875 444555554 57899999999999999999998
Q ss_pred CCCcceEE-EccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCce-eeeeec-CcCceEEEEEccCCCeEEEEEec
Q 013184 351 NLSKSVAV-LKGNLGAIRSIRFTSDGN-FMAMAEPADFVHVYDAKNGFE-KEQEID-FFGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 351 ~~~~~~~~-~~~~~~~v~~l~~sp~g~-~l~s~~~d~~v~vwd~~~~~~-~~~~~~-~~~~v~~~~fspdg~~L~~~~~D 426 (448)
+ ...+.. ...|...|.+++|+|+|+ +|++|+.||.|++||+.++.. +..+.. |...|.++. .|++++|++++.|
T Consensus 278 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~~~d 355 (420)
T 3vl1_A 278 S-KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY-FAAGALFVSSGFD 355 (420)
T ss_dssp T-CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE-EETTEEEEEETTT
T ss_pred C-CceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE-eCCCCEEEEecCC
Confidence 7 444444 456888999999999998 999999999999999998765 555555 566777775 5678899999988
Q ss_pred CCc
Q 013184 427 RTY 429 (448)
Q Consensus 427 ~~~ 429 (448)
+++
T Consensus 356 ~~v 358 (420)
T 3vl1_A 356 TSI 358 (420)
T ss_dssp EEE
T ss_pred ccE
Confidence 654
No 52
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-32 Score=265.45 Aligned_cols=237 Identities=11% Similarity=0.100 Sum_probs=182.1
Q ss_pred ccceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCC
Q 013184 135 LRNLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQG 211 (448)
Q Consensus 135 ~r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg 211 (448)
+..+.+.+....++++ .++.|++|+..++....+..+.+|.. .|.++++ ++++|++|+.||
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~----------------~v~~~~~s~~~~~l~s~s~d~ 77 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDK----------------IVTCVDWAPKSNRIVTCSQDR 77 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSS----------------CEEEEEECTTTCCEEEEETTS
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCc----------------eEEEEEEeCCCCEEEEEeCCC
Confidence 3445666777767666 57789999987654355555666655 4899988 789999999999
Q ss_pred eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceE---EEEee--cCCCeeEEEE
Q 013184 212 ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQL---SKHFS--FPWPVNHTSL 286 (448)
Q Consensus 212 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~--~~~~v~~~~~ 286 (448)
.|++|++..............+...+.++.+ +|++. +|++++.|+.|++||+++++. ...+. |...|.+++|
T Consensus 78 ~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~ 154 (377)
T 3dwl_C 78 NAYVYEKRPDGTWKQTLVLLRLNRAATFVRW--SPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDW 154 (377)
T ss_dssp SEEEC------CCCCEEECCCCSSCEEEEEC--CTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEE
T ss_pred eEEEEEcCCCCceeeeeEecccCCceEEEEE--CCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEE
Confidence 9999999887611122333445666667666 88876 899999999999999998763 45554 8899999999
Q ss_pred CCCCCEEEEEecCCcEEEEECC------------------CCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 013184 287 SPDGKLLVIVGDNPEGILVDSQ------------------TGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWD 348 (448)
Q Consensus 287 sp~~~~l~~~~~d~~i~i~d~~------------------~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd 348 (448)
+|++++|++++.|+.|++||+. .++++..+ +|...|.+++|+|++++|++++.|+.|++||
T Consensus 155 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 155 HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp CTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred cCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 9999999999999999999985 35566667 8999999999999999999999999999999
Q ss_pred ccCCCcc----eEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 013184 349 VRNLSKS----VAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAK 393 (448)
Q Consensus 349 ~~~~~~~----~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~ 393 (448)
+++ ... +..+.+|..+|.+++|+|+|++|++|+.++.+ +|+..
T Consensus 234 ~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 234 PSA-PEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECS-TTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCC-CCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 987 554 77888999999999999999999999877655 77654
No 53
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.7e-30 Score=244.09 Aligned_cols=266 Identities=17% Similarity=0.195 Sum_probs=215.4
Q ss_pred eeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEE
Q 013184 138 LVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELIC 215 (448)
Q Consensus 138 l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~v 215 (448)
+-|++ .+.|.++.+++|++||+.+++....+.+.+|.. .|+++++ ++++|++|+.||+|++
T Consensus 31 l~WS~-~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~----------------~V~~v~~~~~~~~l~sgs~Dg~v~i 93 (318)
T 4ggc_A 31 VDWSS-GNVLAVALDNSVYLWSASSGDILQLLQMEQPGE----------------YISSVAWIKEGNYLAVGTSSAEVQL 93 (318)
T ss_dssp EEECT-TSEEEEEETTEEEEEETTTCCEEEEEECCSTTC----------------CEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEECC-CCEEEEEeCCEEEEEECCCCCEEEEEEecCCCC----------------eEEEEEECCCCCEEEEEECCCcEEE
Confidence 34654 356777789999999999988888888877765 3899988 8899999999999999
Q ss_pred EEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce-EEEEee-cCCCeeEEEECCCCCEE
Q 013184 216 KYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ-LSKHFS-FPWPVNHTSLSPDGKLL 293 (448)
Q Consensus 216 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~-~~~~v~~~~~sp~~~~l 293 (448)
|++.+.... .....|...+.++. +.+. .+++++.++.+++|+..... .+..+. |...+.++.++++++++
T Consensus 94 w~~~~~~~~---~~~~~h~~~~~~~~----~~~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (318)
T 4ggc_A 94 WDVQQQKRL---RNMTSHSARVGSLS----WNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHL 165 (318)
T ss_dssp EETTTTEEE---EEEECCSSCEEEEE----EETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred eecCCceeE---EEecCccceEEEee----cCCC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEE
Confidence 999876543 22334444444443 3333 89999999999999987653 444444 89999999999999999
Q ss_pred EEEecCCcEEEEECCCCce----eEeeecCCCcEEEEEEcCCCC-E--EEEEeCCCcEEEEEccCCCcceEEEccCCCCe
Q 013184 294 VIVGDNPEGILVDSQTGKA----IMPLCGHLDFSFASAWHPDGR-I--FATGNQDKTCRVWDVRNLSKSVAVLKGNLGAI 366 (448)
Q Consensus 294 ~~~~~d~~i~i~d~~~~~~----~~~l~~h~~~v~~~~~~p~g~-~--l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v 366 (448)
++++.|+.|++||+++++. ......|...|.+++++|++. . +++++.+++|++||.+. .... ....+...+
T Consensus 166 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~-~~~~-~~~~~~~~v 243 (318)
T 4ggc_A 166 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACL-SAVDAHSQV 243 (318)
T ss_dssp EEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT-CCEE-EEEECSSCE
T ss_pred EEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc-cccc-ccccceeee
Confidence 9999999999999988763 344556888999999999765 2 34667889999999975 3433 344567789
Q ss_pred EEEEEcCCCCEEEEEe--CCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 367 RSIRFTSDGNFMAMAE--PADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 367 ~~l~~sp~g~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
..+.|+|+++.+++++ .|+.|+|||+.+++.+..+.+|.+.|++++|+|+|++|++|+.|++++
T Consensus 244 ~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~ 309 (318)
T 4ggc_A 244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLR 309 (318)
T ss_dssp EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEE
T ss_pred eeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEE
Confidence 9999999999888765 689999999999999999999999999999999999999999997643
No 54
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-30 Score=243.25 Aligned_cols=257 Identities=14% Similarity=0.119 Sum_probs=212.7
Q ss_pred CCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEEc
Q 013184 142 TSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKYL 218 (448)
Q Consensus 142 ~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~~ 218 (448)
+....++.+ .++.|++|+..++.....+. +|.. .|.++++ ++++|++|+.||.|++|++
T Consensus 27 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--~~~~----------------~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 88 (313)
T 3odt_A 27 VDDSKVASVSRDGTVRLWSKDDQWLGTVVY--TGQG----------------FLNSVCYDSEKELLLFGGKDTMINGVPL 88 (313)
T ss_dssp EETTEEEEEETTSEEEEEEESSSEEEEEEE--ECSS----------------CEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred cCCCEEEEEEcCCcEEEEECCCCEEEEEee--cCCc----------------cEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence 556666665 47789999986655444433 2322 4788888 8899999999999999999
Q ss_pred CCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECC-CCCEEEEE
Q 013184 219 DQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSP-DGKLLVIV 296 (448)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp-~~~~l~~~ 296 (448)
..............+...+.++.+ ++. .+++++.|+.|++|| .++....+. |..++.+++|+| +++.++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~i~~~~~----~~~-~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 89 FATSGEDPLYTLIGHQGNVCSLSF----QDG-VVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp TCCTTSCC-CEECCCSSCEEEEEE----ETT-EEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred eecCCCCcccchhhcccCEEEEEe----cCC-EEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence 876533323334456666677766 333 899999999999999 556666666 899999999988 99999999
Q ss_pred ecCCcEEEEECCCCceeEeeec-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCC
Q 013184 297 GDNPEGILVDSQTGKAIMPLCG-HLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG 375 (448)
Q Consensus 297 ~~d~~i~i~d~~~~~~~~~l~~-h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g 375 (448)
+.++.|++|| .++.+..+.. |...+.+++|+|++. +++++.|+.|++||+++ .+++..+.+|.++|.+++|+|+|
T Consensus 162 ~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~ 237 (313)
T 3odt_A 162 SADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT-GDVLRTYEGHESFVYCIKLLPNG 237 (313)
T ss_dssp ETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECTTS
T ss_pred ECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc-hhhhhhhhcCCceEEEEEEecCC
Confidence 9999999999 5566777777 899999999999998 99999999999999987 78889999999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 376 NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 376 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
.|++++.|+.|++||+.+++....+..|...|.+++|+|+|+ |++++.|+.+
T Consensus 238 -~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i 289 (313)
T 3odt_A 238 -DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLV 289 (313)
T ss_dssp -CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCE
T ss_pred -CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcE
Confidence 588999999999999999999988999999999999999998 6678888653
No 55
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-30 Score=255.50 Aligned_cols=274 Identities=16% Similarity=0.092 Sum_probs=220.3
Q ss_pred cceeeeCCCC-eEEEec-CCeEEEEec----CCCc------eeEEEec--CCCCCCCCCCCCCcccCCcceeeEEEEe--
Q 013184 136 RNLVWSTSKH-DVYLMS-HFSIVHWSS----LSSK------RTEVLDV--SGHVAPCEKHPGNLLEGFTQTQVSTLAV-- 199 (448)
Q Consensus 136 r~l~~~~~~~-~v~~~~-~~~v~~w~~----~~~~------~~~~~~~--~gh~~p~~~~~~~~~~~~~~~~i~~l~~-- 199 (448)
..+.+.+... .+++++ ++.|++|++ .++. ....+.. .+|. ...-+...|+++++
T Consensus 49 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~s~ 118 (425)
T 1r5m_A 49 VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA----------SSGKTTNQVTCLAWSH 118 (425)
T ss_dssp SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----------------CBCEEEEEECT
T ss_pred EEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccc----------cccCCCCceEEEEEcC
Confidence 4456777777 666654 678999998 6655 2222211 1110 00112236899988
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cC
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FP 278 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~ 278 (448)
++++|++|+.+|.|++|+.. ... ......+...+.++.+ +|++. +|++++.|+.|++||+.+++.+..+. +.
T Consensus 119 ~~~~l~~~~~dg~i~i~~~~-~~~---~~~~~~~~~~v~~~~~--~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 191 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWNKT-GAL---LNVLNFHRAPIVSVKW--NKDGT-HIISMDVENVTILWNVISGTVMQHFELKE 191 (425)
T ss_dssp TSSEEEEEETTSCEEEEETT-SCE---EEEECCCCSCEEEEEE--CTTSS-EEEEEETTCCEEEEETTTTEEEEEECCC-
T ss_pred CCCEEEEEeCCCeEEEEeCC-CCe---eeeccCCCccEEEEEE--CCCCC-EEEEEecCCeEEEEECCCCcEEEEeeccc
Confidence 78999999999999999932 222 2233456666677766 88876 88999999999999999999888877 44
Q ss_pred CC---------------eeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCc
Q 013184 279 WP---------------VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKT 343 (448)
Q Consensus 279 ~~---------------v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~ 343 (448)
.. +.+++|+|++ .+++++.++.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 270 (425)
T 1r5m_A 192 TGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT 270 (425)
T ss_dssp --------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred cCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCE
Confidence 44 8999999875 5888999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEE
Q 013184 344 CRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG 423 (448)
Q Consensus 344 i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~ 423 (448)
|++||++. .+.+..+..|...|.+++|+|+| +|++++.++.|++||+.++..+..+..|...|.+++|+|++++|+++
T Consensus 271 i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 348 (425)
T 1r5m_A 271 LRIWHGGN-GNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVA 348 (425)
T ss_dssp EEEECSSS-BSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEE
T ss_pred EEEEECCC-CccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEE
Confidence 99999987 77888899999999999999999 99999999999999999999888888899999999999999999999
Q ss_pred EecCCc
Q 013184 424 VWDRTY 429 (448)
Q Consensus 424 ~~D~~~ 429 (448)
+.|+.+
T Consensus 349 ~~dg~i 354 (425)
T 1r5m_A 349 FMDGQV 354 (425)
T ss_dssp ETTSCE
T ss_pred ECCCeE
Confidence 988754
No 56
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8e-32 Score=267.41 Aligned_cols=267 Identities=16% Similarity=0.162 Sum_probs=206.7
Q ss_pred ceeeeCCC-CeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cCCEEEEEeCCC
Q 013184 137 NLVWSTSK-HDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RDNLLIAGGFQG 211 (448)
Q Consensus 137 ~l~~~~~~-~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~~~lvsg~~dg 211 (448)
.+.|.|.. +.|+.+ .++.|++||+.++....++.+.||..+ |++|+| ++++|++|+.||
T Consensus 124 ~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~----------------V~~l~f~p~~~~~l~s~s~D~ 187 (435)
T 4e54_B 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGS----------------ITGLKFNPLNTNQFYASSMEG 187 (435)
T ss_dssp EEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCC----------------CCEEEECSSCTTEEEEECSSS
T ss_pred EEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCC----------------EEEEEEeCCCCCEEEEEeCCC
Confidence 45566654 445555 478899999988887888888888764 889988 578999999999
Q ss_pred eEEEEEcCCCCceeEEEeecCCC--CceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECC
Q 013184 212 ELICKYLDQPGVSFCSRTTYDEN--AITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSP 288 (448)
Q Consensus 212 ~i~vw~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp 288 (448)
+|++|++..... ..+..++. ..+.++.+ +|++. +|++|+.||.|++||+++..+ ..+. |...|++++|+|
T Consensus 188 ~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~-~l~~g~~dg~i~~wd~~~~~~-~~~~~h~~~v~~v~~~p 260 (435)
T 4e54_B 188 TTRLQDFKGNIL---RVFASSDTINIWFCSLDV--SASSR-MVVTGDNVGNVILLNMDGKEL-WNLRMHKKKVTHVALNP 260 (435)
T ss_dssp CEEEEETTSCEE---EEEECCSSCSCCCCCEEE--ETTTT-EEEEECSSSBEEEEESSSCBC-CCSBCCSSCEEEEEECT
T ss_pred EEEEeeccCCce---eEEeccCCCCccEEEEEE--CCCCC-EEEEEeCCCcEeeeccCccee-EEEecccceEEeeeecC
Confidence 999999975432 12222222 23344544 78876 899999999999999976543 4444 899999999999
Q ss_pred CCC-EEEEEecCCcEEEEECCCCceeEe---eecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCC
Q 013184 289 DGK-LLVIVGDNPEGILVDSQTGKAIMP---LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLG 364 (448)
Q Consensus 289 ~~~-~l~~~~~d~~i~i~d~~~~~~~~~---l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 364 (448)
++. ++++++.|+.|++||+++++.... ..+|...|.+++|+|+|++|++++.|++|+|||+++ ..+...+..|..
T Consensus 261 ~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~-~~~~~~~~~~~~ 339 (435)
T 4e54_B 261 CCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ-WDCPLGLIPHPH 339 (435)
T ss_dssp TCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS-SSSEEEECCCCC
T ss_pred CCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC-CccceEEecccc
Confidence 876 788999999999999988765433 357999999999999999999999999999999987 566666655542
Q ss_pred ------CeEEEEEcCCCCEEEEEeC------------CCeEEEEECCCCceeeeee-cCcCceEEE-EEccCCCeEEEEE
Q 013184 365 ------AIRSIRFTSDGNFMAMAEP------------ADFVHVYDAKNGFEKEQEI-DFFGEISGM-TFSPDTEALFIGV 424 (448)
Q Consensus 365 ------~v~~l~~sp~g~~l~s~~~------------d~~v~vwd~~~~~~~~~~~-~~~~~v~~~-~fspdg~~L~~~~ 424 (448)
.+..+.|+|++.+++++.. ++.|++||..+++.+..+. .|...|.++ +|+|+|++|++|+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~ 419 (435)
T 4e54_B 340 RHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM 419 (435)
T ss_dssp CCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred cccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence 2345678888887777642 3579999999999887765 577788887 6999999998875
Q ss_pred ecCC
Q 013184 425 WDRT 428 (448)
Q Consensus 425 ~D~~ 428 (448)
|++
T Consensus 420 -d~~ 422 (435)
T 4e54_B 420 -GYH 422 (435)
T ss_dssp -SSE
T ss_pred -CCc
Confidence 643
No 57
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=7.9e-31 Score=250.60 Aligned_cols=265 Identities=12% Similarity=0.075 Sum_probs=219.2
Q ss_pred cceeeeCCCCeEEEe-cCCeEEEEecCCCce-eEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCC-EEEEEeCC
Q 013184 136 RNLVWSTSKHDVYLM-SHFSIVHWSSLSSKR-TEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDN-LLIAGGFQ 210 (448)
Q Consensus 136 r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~-~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~-~lvsg~~d 210 (448)
..+.+.+....++++ .++.|++|+..++.. .......+|.. .|.++++ +++ +|++|+.|
T Consensus 15 ~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~----------------~v~~~~~~~~~~~~l~~~~~d 78 (342)
T 1yfq_A 15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH----------------PLLCCNFIDNTDLQIYVGTVQ 78 (342)
T ss_dssp EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSS----------------CEEEEEEEESSSEEEEEEETT
T ss_pred EEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCC----------------ceEEEEECCCCCcEEEEEcCC
Confidence 445567776766665 478899999876651 12222224433 4788888 788 99999999
Q ss_pred CeEEEEEc-CCCCceeEEEeecC--CCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC---------ceEEEEeecC
Q 013184 211 GELICKYL-DQPGVSFCSRTTYD--ENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER---------FQLSKHFSFP 278 (448)
Q Consensus 211 g~i~vw~~-~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~---------~~~~~~~~~~ 278 (448)
|.|++|++ ..... ..... +...+.++.+ +| +. .+++++.|+.|++||+.+ ++++..+.+.
T Consensus 79 g~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~--~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 150 (342)
T 1yfq_A 79 GEILKVDLIGSPSF----QALTNNEANLGICRICK--YG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK 150 (342)
T ss_dssp SCEEEECSSSSSSE----EECBSCCCCSCEEEEEE--ET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSC
T ss_pred CeEEEEEeccCCce----EeccccCCCCceEEEEe--CC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEeeC
Confidence 99999999 76543 23334 6666777776 67 54 899999999999999988 7777777789
Q ss_pred CCeeEEEECCCCCEEEEEecCCcEEEEECCC-Cce--eEeeecCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEEccCC--
Q 013184 279 WPVNHTSLSPDGKLLVIVGDNPEGILVDSQT-GKA--IMPLCGHLDFSFASAWHP-DGRIFATGNQDKTCRVWDVRNL-- 352 (448)
Q Consensus 279 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~-~~~--~~~l~~h~~~v~~~~~~p-~g~~l~s~~~d~~i~iwd~~~~-- 352 (448)
..|.+++|+|++ +++++.++.|++||+++ +.. ......|...+.+++|+| ++++|++++.||.|++|+++..
T Consensus 151 ~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~ 228 (342)
T 1yfq_A 151 NKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228 (342)
T ss_dssp CCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred CceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc
Confidence 999999999887 99999999999999998 553 334456888999999999 9999999999999999999874
Q ss_pred ---CcceEEEccCCC---------CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecC-cCceEEEEEccCCCe
Q 013184 353 ---SKSVAVLKGNLG---------AIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDF-FGEISGMTFSPDTEA 419 (448)
Q Consensus 353 ---~~~~~~~~~~~~---------~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-~~~v~~~~fspdg~~ 419 (448)
...+..+..|.. +|.+++|+|+|++|++++.||.|++||+.+++.+..+..| .+.|.+++ |+|++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~ 306 (342)
T 1yfq_A 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNI 306 (342)
T ss_dssp STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSE
T ss_pred ccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCe
Confidence 377888888865 9999999999999999999999999999999998888888 99999999 99999
Q ss_pred EEEEEecCC
Q 013184 420 LFIGVWDRT 428 (448)
Q Consensus 420 L~~~~~D~~ 428 (448)
|++|+.|++
T Consensus 307 l~s~s~Dg~ 315 (342)
T 1yfq_A 307 LCLATSDDT 315 (342)
T ss_dssp EEEEEECTH
T ss_pred EEEEecCCc
Confidence 999999987
No 58
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.9e-30 Score=247.17 Aligned_cols=249 Identities=14% Similarity=0.135 Sum_probs=202.4
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCce-eEEEeecCCCCceeeEEEEeCCC-CCeeEEEEeCCCcEEEEecCC
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVS-FCSRTTYDENAITNAVEIYNSPS-GGIHFMASNNDCGVRDFDMER 268 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~dg~v~iwd~~~ 268 (448)
.|+++++ ++++|++|+.||.|++|++...... ........|...+.++++ +|. +..+|++++.||.|++||+.+
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~d~~~l~s~~~dg~v~vwd~~~ 90 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW--ASPEYGRIIASASYDKTVKLWEEDP 90 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEE--CCGGGCSEEEEEETTSCEEEEEECT
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEE--cCCCCCCEEEEEcCCCeEEEEecCC
Confidence 5899998 8899999999999999999875432 223334456777777777 673 234899999999999999987
Q ss_pred c---------eEEEEee-cCCCeeEEEECCC--CCEEEEEecCCcEEEEECCCCceeEeee-------------cCCCcE
Q 013184 269 F---------QLSKHFS-FPWPVNHTSLSPD--GKLLVIVGDNPEGILVDSQTGKAIMPLC-------------GHLDFS 323 (448)
Q Consensus 269 ~---------~~~~~~~-~~~~v~~~~~sp~--~~~l~~~~~d~~i~i~d~~~~~~~~~l~-------------~h~~~v 323 (448)
+ +.+..+. |...|.+++|+|+ +++|++++.|+.|++||+++++.+..+. +|...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (351)
T 3f3f_A 91 DQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSD 170 (351)
T ss_dssp TSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCC
T ss_pred CcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccce
Confidence 6 4555555 8999999999999 9999999999999999999887654433 578899
Q ss_pred EEEEEcCC---CCEEEEEeCCCcEEEEEccCCCcc--eEEEccCCCCeEEEEEcCCC----CEEEEEeCCCeEEEEECCC
Q 013184 324 FASAWHPD---GRIFATGNQDKTCRVWDVRNLSKS--VAVLKGNLGAIRSIRFTSDG----NFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 324 ~~~~~~p~---g~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~v~~l~~sp~g----~~l~s~~~d~~v~vwd~~~ 394 (448)
.+++|+|+ +.++++++.++.+.+|+... ... +..+.+|...|++++|+|+| ++|++|+.||.|++||+.+
T Consensus 171 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 171 FCLSWCPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp EEEEECCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred eEEEeccCCCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence 99999997 89999999999998887765 443 67788899999999999998 8999999999999999987
Q ss_pred C----------------------------------------------ceeeeeecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 395 G----------------------------------------------FEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 395 ~----------------------------------------------~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
+ ..+..+..|.+.|++++|+|+|++|++|+.|+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~ 329 (351)
T 3f3f_A 250 KLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGK 329 (351)
T ss_dssp CC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSC
T ss_pred CcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCc
Confidence 5 445556679999999999999999999999975
Q ss_pred cceEEEEecccceEecc
Q 013184 429 YGSLLQYNRCRNYTYLD 445 (448)
Q Consensus 429 ~~~ll~~~~~~~~~~l~ 445 (448)
+ .++.+.......++.
T Consensus 330 v-~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 330 V-RLWKATYSNEFKCMS 345 (351)
T ss_dssp E-EEEEECTTSCEEEEE
T ss_pred E-EEEecCcCcchhhee
Confidence 3 334444444444443
No 59
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.6e-33 Score=268.04 Aligned_cols=230 Identities=13% Similarity=0.105 Sum_probs=186.4
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
.|.++++ ++++|++|+.||.|++|++...... .......|...+.++.+ +|++. +|++++.|+.|++||+.+++
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~-~~~~~~~h~~~v~~~~~--s~~~~-~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWK-HARTFSDHDKIVTCVDW--APKSN-RIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEE-ECCCBCCCSSCEEEEEE--CTTTC-CEEEEETTSSEEEC------
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceE-EEEEEecCCceEEEEEE--eCCCC-EEEEEeCCCeEEEEEcCCCC
Confidence 4777777 7899999999999999999865312 12233456666777766 88876 89999999999999999877
Q ss_pred ---EEEEe-ecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCc---eeEeeec-CCCcEEEEEEcCCCCEEEEEeCCC
Q 013184 271 ---LSKHF-SFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGK---AIMPLCG-HLDFSFASAWHPDGRIFATGNQDK 342 (448)
Q Consensus 271 ---~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~---~~~~l~~-h~~~v~~~~~~p~g~~l~s~~~d~ 342 (448)
....+ .|...|.+++|+|++++|++++.|+.|++||+++++ ....+.+ |...|.+++|+|++++|++++.|+
T Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~ 168 (377)
T 3dwl_C 89 TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR 168 (377)
T ss_dssp CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS
T ss_pred ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC
Confidence 33333 489999999999999999999999999999999887 4677877 999999999999999999999999
Q ss_pred cEEEEEccCC-----------------CcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce----eeee
Q 013184 343 TCRVWDVRNL-----------------SKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFE----KEQE 401 (448)
Q Consensus 343 ~i~iwd~~~~-----------------~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~----~~~~ 401 (448)
+|++||++.. +.++..+ +|.+.|.+++|+|+|++|++++.|+.|+|||+.++.. +..+
T Consensus 169 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 247 (377)
T 3dwl_C 169 KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV 247 (377)
T ss_dssp CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCE
T ss_pred EEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEee
Confidence 9999998521 3345555 8999999999999999999999999999999999887 6778
Q ss_pred ecCcCceEEEEEccCCCeEEEEEecC
Q 013184 402 IDFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 402 ~~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
..|...|.+++|+|+|++|++|+.|+
T Consensus 248 ~~~~~~v~~~~~s~~~~~l~~~~~~~ 273 (377)
T 3dwl_C 248 KLSQLPLRSLLWANESAIVAAGYNYS 273 (377)
T ss_dssp ECSSSCEEEEEEEETTEEEEEESSSS
T ss_pred cCCCCceEEEEEcCCCCEEEEEcCCc
Confidence 88999999999999999998886553
No 60
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-30 Score=251.63 Aligned_cols=233 Identities=14% Similarity=0.174 Sum_probs=195.6
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCC--CCeeEEEEeCCCcEEEEecCC
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPS--GGIHFMASNNDCGVRDFDMER 268 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~s~dg~v~iwd~~~ 268 (448)
.|.++++ ++++|++|+.||.|++|++....... ......|...+.++.+ +++ +. +|++++.||.|++||+.+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~h~~~v~~~~~--~~~~~~~-~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKL-IDTLTGHEGPVWRVDW--AHPKFGT-ILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEE-EEEECCCSSCEEEEEE--CCGGGCS-EEEEEETTSCEEEEEEET
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCCccee-eeEecCCCCcEEEEEe--CCCCCCC-EEEEeccCCEEEEEEcCC
Confidence 5899988 78999999999999999997544333 2333456666777776 555 54 899999999999999998
Q ss_pred ce--EEEEee-cCCCeeEEEECCC--CCEEEEEecCCcEEEEECCCCc--eeEeeecCCCcEEEEEEcC-----------
Q 013184 269 FQ--LSKHFS-FPWPVNHTSLSPD--GKLLVIVGDNPEGILVDSQTGK--AIMPLCGHLDFSFASAWHP----------- 330 (448)
Q Consensus 269 ~~--~~~~~~-~~~~v~~~~~sp~--~~~l~~~~~d~~i~i~d~~~~~--~~~~l~~h~~~v~~~~~~p----------- 330 (448)
++ .+..+. |...|.+++|+|+ +.+|++++.|+.|++||+.++. ....+.+|...|.+++|+|
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 168 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 168 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---------
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccC
Confidence 86 455555 8899999999998 9999999999999999998874 3456778999999999999
Q ss_pred --CCCEEEEEeCCCcEEEEEccCCC---cceEEEccCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEECCCCce-----
Q 013184 331 --DGRIFATGNQDKTCRVWDVRNLS---KSVAVLKGNLGAIRSIRFTSD---GNFMAMAEPADFVHVYDAKNGFE----- 397 (448)
Q Consensus 331 --~g~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~l~~sp~---g~~l~s~~~d~~v~vwd~~~~~~----- 397 (448)
++.+|++++.|+.|++||++... ..+..+.+|...|.+++|+|+ +++|++++.||.|+|||+.++..
T Consensus 169 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 248 (379)
T 3jrp_A 169 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT 248 (379)
T ss_dssp -CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEE
T ss_pred CCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceee
Confidence 69999999999999999998633 244678889999999999999 89999999999999999988642
Q ss_pred eeeeecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 398 KEQEIDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 398 ~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
......|...|.+++|+|+|++|++++.|+.+
T Consensus 249 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i 280 (379)
T 3jrp_A 249 LLKEEKFPDVLWRASWSLSGNVLALSGGDNKV 280 (379)
T ss_dssp ESSSSCCSSCEEEEEECSSSCCEEEEESSSSE
T ss_pred eeccccCCCcEEEEEEcCCCCEEEEecCCCcE
Confidence 22223478899999999999999999999764
No 61
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.2e-30 Score=255.82 Aligned_cols=282 Identities=10% Similarity=0.118 Sum_probs=210.1
Q ss_pred cceeeeCCCCeEEEec-CCeEEEEecCCCce---------eEEEecCCCCCCCCCCCCCcccCC-cceeeEEEEe--cC-
Q 013184 136 RNLVWSTSKHDVYLMS-HFSIVHWSSLSSKR---------TEVLDVSGHVAPCEKHPGNLLEGF-TQTQVSTLAV--RD- 201 (448)
Q Consensus 136 r~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~---------~~~~~~~gh~~p~~~~~~~~~~~~-~~~~i~~l~~--~~- 201 (448)
..+.+.+.+..+++++ ++.|++|+..++.. ..+..+.+|..... .+..+ ....|.++++ ++
T Consensus 32 ~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~-----~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 32 STVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFD-----YLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEE-----GGGTEEECCCCCEEEECCCCS
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccccccccc-----ccccccccCceEEEEEcCCCC
Confidence 3455667777777764 77899999876541 12334455541000 00000 0124888888 44
Q ss_pred -CEEEEEeCCCeEEEEEcCCCCcee-------------------------------------EEEeecCCCCceeeEEEE
Q 013184 202 -NLLIAGGFQGELICKYLDQPGVSF-------------------------------------CSRTTYDENAITNAVEIY 243 (448)
Q Consensus 202 -~~lvsg~~dg~i~vw~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~v~~~ 243 (448)
.+|++|+.||.|++|++....... .......|...+.++.+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~- 185 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI- 185 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE-
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE-
Confidence 689999999999999987532110 01223456677777776
Q ss_pred eCCCCCeeEEEEeCCCcEEEEecC-CceEEEEe--------ecCCCeeEEEECCCC-CEEEEEecCCcEEEEECCCCce-
Q 013184 244 NSPSGGIHFMASNNDCGVRDFDME-RFQLSKHF--------SFPWPVNHTSLSPDG-KLLVIVGDNPEGILVDSQTGKA- 312 (448)
Q Consensus 244 ~~~~~~~~l~s~s~dg~v~iwd~~-~~~~~~~~--------~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~- 312 (448)
+|++. +|++| .|+.|++||+. .++....+ .|...|.+++|+|++ ++|++++.|+.|++||+++++.
T Consensus 186 -~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 186 -NSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp -CTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred -cCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 88876 77787 79999999998 44555532 388899999999998 9999999999999999999887
Q ss_pred ---eEeeecCCC------------cEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCC------------
Q 013184 313 ---IMPLCGHLD------------FSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGA------------ 365 (448)
Q Consensus 313 ---~~~l~~h~~------------~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------ 365 (448)
+..+.+|.. .|.+++|+|+|++|++++. +.|++||++..++++..+.+|...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC 341 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence 778888876 8999999999999999999 999999998657788888887542
Q ss_pred ---eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee--------------------------------ecCcCceEE
Q 013184 366 ---IRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQE--------------------------------IDFFGEISG 410 (448)
Q Consensus 366 ---v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~--------------------------------~~~~~~v~~ 410 (448)
+..++|+|+|++|++|+.||.|+|||+.+++.+... ..+...|..
T Consensus 342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 421 (447)
T 3dw8_B 342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILH 421 (447)
T ss_dssp GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCE
T ss_pred cccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeE
Confidence 234999999999999999999999999988764211 123457899
Q ss_pred EEEccCCCeEEEEEecC
Q 013184 411 MTFSPDTEALFIGVWDR 427 (448)
Q Consensus 411 ~~fspdg~~L~~~~~D~ 427 (448)
++|+|+|.+|++++.++
T Consensus 422 ~~~~p~~~~la~~~~~~ 438 (447)
T 3dw8_B 422 TAWHPKENIIAVATTNN 438 (447)
T ss_dssp EEECSSSSEEEEECSSC
T ss_pred EEECCCCCEEEEEecce
Confidence 99999999999998764
No 62
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.4e-31 Score=258.47 Aligned_cols=255 Identities=15% Similarity=0.181 Sum_probs=205.2
Q ss_pred cCCeEEEEecCCCce--eEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cCCEEEEEeCCCeEEEEEcCCCCce-
Q 013184 151 SHFSIVHWSSLSSKR--TEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RDNLLIAGGFQGELICKYLDQPGVS- 224 (448)
Q Consensus 151 ~~~~v~~w~~~~~~~--~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~- 224 (448)
.++.|++|+...... ..+..+.+|.. .|.++++ ++++|++|+.||.|++|++...+..
T Consensus 55 ~~g~i~v~~~~~~~~~~~~~~~~~~h~~----------------~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~ 118 (402)
T 2aq5_A 55 GGGAFLVLPLGKTGRVDKNVPLVCGHTA----------------PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL 118 (402)
T ss_dssp SSCCEEEEETTCCEECCTTCCCBCCCSS----------------CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS
T ss_pred CCCEEEEEECccCCCCCCCCceEecCCC----------------CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc
Confidence 477899999744211 11222344443 4899988 6789999999999999999876421
Q ss_pred ---eEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEe--e-cCCCeeEEEECCCCCEEEEEec
Q 013184 225 ---FCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHF--S-FPWPVNHTSLSPDGKLLVIVGD 298 (448)
Q Consensus 225 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~--~-~~~~v~~~~~sp~~~~l~~~~~ 298 (448)
........|...+.++.+ +|++..+|++++.|+.|++||+.+++.+..+ . |...|.+++|+|++++|++++.
T Consensus 119 ~~~~~~~~~~~h~~~v~~~~~--~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 119 PLREPVITLEGHTKRVGIVAW--HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp CBCSCSEEEECCSSCEEEEEE--CSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred ccCCceEEecCCCCeEEEEEE--CcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 112233456666777766 8888668999999999999999999999888 4 8999999999999999999999
Q ss_pred CCcEEEEECCCCceeEee-ecCCCc-EEEEEEcCCCCEEEEE---eCCCcEEEEEccCCCcceEEEc-cCCCCeEEEEEc
Q 013184 299 NPEGILVDSQTGKAIMPL-CGHLDF-SFASAWHPDGRIFATG---NQDKTCRVWDVRNLSKSVAVLK-GNLGAIRSIRFT 372 (448)
Q Consensus 299 d~~i~i~d~~~~~~~~~l-~~h~~~-v~~~~~~p~g~~l~s~---~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~l~~s 372 (448)
|+.|++||+++++.+..+ .+|... +.+++|+|++++|++| +.|+.|++||+++...++.... .+...+.+++|+
T Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 276 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFD 276 (402)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEE
T ss_pred CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEc
Confidence 999999999999999988 788776 8999999999999999 7899999999987555444443 567789999999
Q ss_pred CCCCEEEEE-eCCCeEEEEECCCCce-eeeeec--CcCceEEEEEccCCCeEEEE
Q 013184 373 SDGNFMAMA-EPADFVHVYDAKNGFE-KEQEID--FFGEISGMTFSPDTEALFIG 423 (448)
Q Consensus 373 p~g~~l~s~-~~d~~v~vwd~~~~~~-~~~~~~--~~~~v~~~~fspdg~~L~~~ 423 (448)
|+|++|+++ +.|+.|++||+.+++. +..+.. |.+.|.+++|+|++.+++++
T Consensus 277 ~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~ 331 (402)
T 2aq5_A 277 PDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK 331 (402)
T ss_dssp TTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG
T ss_pred CCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceec
Confidence 999999754 4799999999998874 334433 55899999999999988753
No 63
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-29 Score=244.57 Aligned_cols=243 Identities=14% Similarity=0.189 Sum_probs=209.4
Q ss_pred CceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeE
Q 013184 163 SKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAV 240 (448)
Q Consensus 163 ~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v 240 (448)
+.....+.+.||.. .|+++++ ++++|++|+.||.|++|++.+.... .....|...+.++
T Consensus 20 G~~~~~~~l~~h~~----------------~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~h~~~v~~~ 80 (369)
T 3zwl_B 20 GSHMKAIKLTGHER----------------PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL---GTLDGHTGTIWSI 80 (369)
T ss_dssp CCSEEEEEEECCSS----------------CEEEEEECTTSCEEEEEESSSCEEEEETTTCCEE---EEECCCSSCEEEE
T ss_pred ccccccEEEEEeec----------------eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhh---hhhhhcCCcEEEE
Confidence 44455566667766 4899998 8899999999999999999876543 2334556666677
Q ss_pred EEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecC-----CcEEEEECCCCc----
Q 013184 241 EIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDN-----PEGILVDSQTGK---- 311 (448)
Q Consensus 241 ~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~i~d~~~~~---- 311 (448)
.+ +|++. +|++++.||.|++||+.+++.+..+.+..+|.+++|+|+++++++++.+ +.|.+||+..+.
T Consensus 81 ~~--~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~ 157 (369)
T 3zwl_B 81 DV--DCFTK-YCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHE 157 (369)
T ss_dssp EE--CTTSS-EEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCC
T ss_pred EE--cCCCC-EEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCcccee
Confidence 66 88776 8999999999999999999999999999999999999999999999998 999999987654
Q ss_pred -------eeEeeecCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEe
Q 013184 312 -------AIMPLCGHLD--FSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAE 382 (448)
Q Consensus 312 -------~~~~l~~h~~--~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~ 382 (448)
.+..+..|.. .+.+++|+|++++|++++.||.|++||+++....+..+..|...|.+++|+|+|++|++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 158 LTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS 237 (369)
T ss_dssp EEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec
Confidence 3444556666 8999999999999999999999999999875678889999999999999999999999999
Q ss_pred CCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 383 PADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 383 ~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
.|+.|++||+.++.....+. +...+..++|+|++++|++++.++.
T Consensus 238 ~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (369)
T 3zwl_B 238 RDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEA 282 (369)
T ss_dssp TTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-
T ss_pred CCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCC
Confidence 99999999999988777665 7788999999999999999988763
No 64
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.2e-30 Score=252.94 Aligned_cols=263 Identities=12% Similarity=0.046 Sum_probs=209.9
Q ss_pred eeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEE
Q 013184 140 WSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICK 216 (448)
Q Consensus 140 ~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw 216 (448)
+.+....++++ .++.|++|++.++. ....+.+|.. .|.++++ ++++|++|+.||.|++|
T Consensus 105 ~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~h~~----------------~v~~~~~~~~~~~l~s~s~d~~i~iw 166 (420)
T 3vl1_A 105 AKLQMRRFILGTTEGDIKVLDSNFNL--QREIDQAHVS----------------EITKLKFFPSGEALISSSQDMQLKIW 166 (420)
T ss_dssp ECSSSCEEEEEETTSCEEEECTTSCE--EEEETTSSSS----------------CEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EecCCCEEEEEECCCCEEEEeCCCcc--eeeecccccC----------------ccEEEEECCCCCEEEEEeCCCeEEEE
Confidence 44555666665 46789999986543 3334455554 4899998 78899999999999999
Q ss_pred EcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee----cC--------------
Q 013184 217 YLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS----FP-------------- 278 (448)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~-------------- 278 (448)
++.+..... ....|...+.++.+ +|++. +|++++.|+.|++||+++++.+..+. +.
T Consensus 167 d~~~~~~~~---~~~~h~~~v~~~~~--~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 240 (420)
T 3vl1_A 167 SVKDGSNPR---TLIGHRATVTDIAI--IDRGR-NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR 240 (420)
T ss_dssp ETTTCCCCE---EEECCSSCEEEEEE--ETTTT-EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCS
T ss_pred eCCCCcCce---EEcCCCCcEEEEEE--cCCCC-EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcc
Confidence 998776432 22356666777776 78876 89999999999999999999888876 22
Q ss_pred -------CCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeee-cCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEEc
Q 013184 279 -------WPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLC-GHLDFSFASAWHPDGR-IFATGNQDKTCRVWDV 349 (448)
Q Consensus 279 -------~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~-~h~~~v~~~~~~p~g~-~l~s~~~d~~i~iwd~ 349 (448)
..+.+++|+|++++|++++.++.|++||+++++.+..+. +|...|.+++|+|++. +|++|+.||.|++||+
T Consensus 241 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~ 320 (420)
T 3vl1_A 241 QLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL 320 (420)
T ss_dssp SCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred eeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEc
Confidence 445556668999999999999999999999998877765 4889999999999999 9999999999999999
Q ss_pred cCCCcceEEEcc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------eeeeeecCcCceEEEEEccCCC-
Q 013184 350 RNLSKSVAVLKG-NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGF---------EKEQEIDFFGEISGMTFSPDTE- 418 (448)
Q Consensus 350 ~~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~---------~~~~~~~~~~~v~~~~fspdg~- 418 (448)
++...++..+.. |...|.++.| |++++|++++.|+.|++|++.... ....+..|.+.|.+++|+|+++
T Consensus 321 ~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 399 (420)
T 3vl1_A 321 RSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDES 399 (420)
T ss_dssp TCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSS
T ss_pred CCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCC
Confidence 885566777777 6677888855 578999999999999999988742 2234556788999999999999
Q ss_pred --eEEEEEecC
Q 013184 419 --ALFIGVWDR 427 (448)
Q Consensus 419 --~L~~~~~D~ 427 (448)
.|++.+.++
T Consensus 400 ~g~l~a~g~~g 410 (420)
T 3vl1_A 400 NGEVLEVGKNN 410 (420)
T ss_dssp SCEEEEEETTT
T ss_pred cceEEEEcCCc
Confidence 676666653
No 65
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-31 Score=262.43 Aligned_cols=276 Identities=11% Similarity=0.100 Sum_probs=215.3
Q ss_pred ccceeeeC-CCCeEEEe-cCCeEEEEecCC---Cc-eeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEE
Q 013184 135 LRNLVWST-SKHDVYLM-SHFSIVHWSSLS---SK-RTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIA 206 (448)
Q Consensus 135 ~r~l~~~~-~~~~v~~~-~~~~v~~w~~~~---~~-~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvs 206 (448)
+..+.+.+ ....++.+ .++.|++|+..+ +. ....... +|. ..|.++++ ++++|++
T Consensus 66 V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~----------------~~v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 66 ITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCS----------------STVTQITMIPNFDAFAV 128 (437)
T ss_dssp EEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECS----------------SCEEEEEECTTSSEEEE
T ss_pred eEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCC----------------CCEEEEEEeCCCCEEEE
Confidence 34556777 56666665 477899999754 21 1011111 122 25899999 7899999
Q ss_pred EeCCCeEEEEEcC---CCCceeE------EEeecC---CCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEE
Q 013184 207 GGFQGELICKYLD---QPGVSFC------SRTTYD---ENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKH 274 (448)
Q Consensus 207 g~~dg~i~vw~~~---~~~~~~~------~~~~~~---~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 274 (448)
|+.||.|++|++. ....... ..+... +...+.++.+.+++++. +|++++.|+.|++||+++++++..
T Consensus 129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 129 SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRTLERLQI 207 (437)
T ss_dssp EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTTCCEEEE
T ss_pred EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeeeEE
Confidence 9999999999995 3321111 111111 34455566665677765 899999999999999999998888
Q ss_pred ee---cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeee-cCCCcEEEEEEcC----CCCEEEEEeCCCcEEE
Q 013184 275 FS---FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLC-GHLDFSFASAWHP----DGRIFATGNQDKTCRV 346 (448)
Q Consensus 275 ~~---~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~-~h~~~v~~~~~~p----~g~~l~s~~~d~~i~i 346 (448)
+. |...|++++|+|++++|++++.|+.|++||+++++.+..+. .|...|.+++|+| ++.+|++|+.|+.|++
T Consensus 208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i 287 (437)
T 3gre_A 208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI 287 (437)
T ss_dssp EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence 87 57899999999999999999999999999999999998886 7888999996665 6779999999999999
Q ss_pred EEccCCCcceEEEcc--------------------------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee
Q 013184 347 WDVRNLSKSVAVLKG--------------------------NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400 (448)
Q Consensus 347 wd~~~~~~~~~~~~~--------------------------~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~ 400 (448)
||+++ ++++..+.+ |...|.+++|+ ++++|++|+.|+.|++||+.+++....
T Consensus 288 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 288 WNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp EETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred EEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence 99986 666666654 45568889999 779999999999999999999887666
Q ss_pred eec-------------------------------------CcCceEEEEEccC--CCeEEEEEecCCcc
Q 013184 401 EID-------------------------------------FFGEISGMTFSPD--TEALFIGVWDRTYG 430 (448)
Q Consensus 401 ~~~-------------------------------------~~~~v~~~~fspd--g~~L~~~~~D~~~~ 430 (448)
+.. |...|.+++|+++ +.+|++|+.||.+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~ 434 (437)
T 3gre_A 366 VISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIG 434 (437)
T ss_dssp EECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEE
T ss_pred EecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEE
Confidence 554 7889999999998 78999999998754
No 66
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-32 Score=272.57 Aligned_cols=266 Identities=10% Similarity=-0.027 Sum_probs=200.2
Q ss_pred cCCeEEEEecCCCceeE--EEecCCCCCCCCCCCCCcccCCcceeeEEEEec--------CCEEEEEeCCCeEEEEEcCC
Q 013184 151 SHFSIVHWSSLSSKRTE--VLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVR--------DNLLIAGGFQGELICKYLDQ 220 (448)
Q Consensus 151 ~~~~v~~w~~~~~~~~~--~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~--------~~~lvsg~~dg~i~vw~~~~ 220 (448)
.+++|++|+..++.... ...+.+|.. .|.++++. +.+||+|+.||+|++|++..
T Consensus 181 ~D~tI~iWd~~~~~~~~~~~~~l~~~~~----------------~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~ 244 (524)
T 2j04_B 181 HSSCIQIFKMNTSTLHCVKVQTIVHSFG----------------EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIID 244 (524)
T ss_dssp -CEEEEEEEEETTTCCEEEEEEEEECCC----------------SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCC
T ss_pred CCceEEEEEccCCCCCceEEEEEEecCC----------------cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCC
Confidence 35679999986654322 112222222 47888882 46999999999999999976
Q ss_pred CCce--------eEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce-EEEEee-cCCCeeEE--EECC
Q 013184 221 PGVS--------FCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ-LSKHFS-FPWPVNHT--SLSP 288 (448)
Q Consensus 221 ~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~-~~~~v~~~--~~sp 288 (448)
.... ........|...+.++++ ++++ .|++|+.||+|++||+++++ +...+. |..+|+++ +|+|
T Consensus 245 ~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~--s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~ 320 (524)
T 2j04_B 245 NATDVHVFKMCEKPSLTLSLADSLITTFDF--LSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD 320 (524)
T ss_dssp CSSSSSEEECCCSCSEEECCTTTCEEEEEE--SSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT
T ss_pred CccccccceeecCceEEEEcCCCCEEEEEe--cCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC
Confidence 5421 001123345566677766 6643 79999999999999998764 344455 89999999 5788
Q ss_pred CC-CEEEEEecCCcEEEEECCCCceeEeeecCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCC
Q 013184 289 DG-KLLVIVGDNPEGILVDSQTGKAIMPLCGHLD--FSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGA 365 (448)
Q Consensus 289 ~~-~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~--~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 365 (448)
++ .+|++++.|++|+|||+++++++..+.+|.. .|.+++|+|+++.|++++.|++|++||++. ..++..+.+|.+.
T Consensus 321 ~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~ 399 (524)
T 2j04_B 321 FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETT 399 (524)
T ss_dssp TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSC
T ss_pred CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCc
Confidence 87 8999999999999999999888877777764 478999999999999999999999999987 6777888899999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------------------------------------ceeeee
Q 013184 366 IRSIRFTSDGNFMAMAEPADFVHVYDAKNG--------------------------------------------FEKEQE 401 (448)
Q Consensus 366 v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~--------------------------------------------~~~~~~ 401 (448)
|++++|+|+|++|++|+.|++|+|||+... ..+..+
T Consensus 400 V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l 479 (524)
T 2j04_B 400 ITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKI 479 (524)
T ss_dssp EEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-----------
T ss_pred eEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeee
Confidence 999999999999999999999999985321 011123
Q ss_pred ecCcCceEEEEEccCCC---eEEEEEecCCcceEEEEecc
Q 013184 402 IDFFGEISGMTFSPDTE---ALFIGVWDRTYGSLLQYNRC 438 (448)
Q Consensus 402 ~~~~~~v~~~~fspdg~---~L~~~~~D~~~~~ll~~~~~ 438 (448)
.+|.+.|.+++|+|+++ .|++|+.|++++ ++.+...
T Consensus 480 ~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vr-lw~l~~~ 518 (524)
T 2j04_B 480 DAHGINITCTKWNETSAGGKCYAFSNSAGLLT-LEYLSLE 518 (524)
T ss_dssp --CCCSCCCEEECCSTTTTTEEEEECTTSEEE-EEECSCC
T ss_pred cCCCceEEEEECCCCCCccHHHHhhccCceEE-EEEcccc
Confidence 34667899999999954 888888876643 3334333
No 67
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.6e-30 Score=269.09 Aligned_cols=227 Identities=19% Similarity=0.254 Sum_probs=195.2
Q ss_pred eeEEEEe---cCCEEEEEeCCCeEEEEEcCCCCc--eeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecC
Q 013184 193 QVSTLAV---RDNLLIAGGFQGELICKYLDQPGV--SFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDME 267 (448)
Q Consensus 193 ~i~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~ 267 (448)
.|+++++ ++++|++|+.||+|++|++..... ..+......|...+.++++ +|++. +|++|+.|+.|++||+.
T Consensus 384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~--s~~g~-~l~sgs~Dg~v~vwd~~ 460 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVL--SSDGQ-FALSGSWDGELRLWDLA 460 (694)
T ss_dssp CEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEE--CTTSS-EEEEEETTSEEEEEETT
T ss_pred eeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEE--CCCCC-EEEEEeCCCcEEEEECC
Confidence 4899998 357999999999999999986542 2233444566777777776 88876 89999999999999999
Q ss_pred CceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEee---ecCCCcEEEEEEcCCC--CEEEEEeCC
Q 013184 268 RFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPL---CGHLDFSFASAWHPDG--RIFATGNQD 341 (448)
Q Consensus 268 ~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l---~~h~~~v~~~~~~p~g--~~l~s~~~d 341 (448)
+++....+. |...|.+++|+|++++|++++.|+.|++||.......... .+|...|.+++|+|++ .+|++|+.|
T Consensus 461 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d 540 (694)
T 3dm0_A 461 AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD 540 (694)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC
Confidence 999888887 9999999999999999999999999999998765433322 4688999999999987 589999999
Q ss_pred CcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEE
Q 013184 342 KTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALF 421 (448)
Q Consensus 342 ~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~ 421 (448)
++|++||+++ .++...+.+|.+.|++++|+|+|++|++|+.|+.|+|||+.+++.+..+. +...|.+++|+|++.+|+
T Consensus 541 ~~v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 541 KTVKVWNLSN-CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLC 618 (694)
T ss_dssp SCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEE
T ss_pred CeEEEEECCC-CcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEE
Confidence 9999999987 78888999999999999999999999999999999999999998776654 456899999999998887
Q ss_pred EEE
Q 013184 422 IGV 424 (448)
Q Consensus 422 ~~~ 424 (448)
++.
T Consensus 619 ~~~ 621 (694)
T 3dm0_A 619 AAT 621 (694)
T ss_dssp EEE
T ss_pred EEc
Confidence 764
No 68
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.7e-30 Score=248.71 Aligned_cols=233 Identities=12% Similarity=0.121 Sum_probs=199.8
Q ss_pred eeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc
Q 013184 192 TQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF 269 (448)
Q Consensus 192 ~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~ 269 (448)
.+|.++++ ++++|++|+.+|.|++|++......... ....|...+.++.+ +|++. +|++++.|+.|++||++++
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~-~~~~h~~~v~~~~~--~~~~~-~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDW--APDSN-RIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE-EEECCSSCEEEEEE--ETTTT-EEEEEETTSCEEEEEEETT
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeee-eecCCCCcccEEEE--eCCCC-EEEEEcCCCeEEEEECCCC
Confidence 45888888 8899999999999999999876522223 33355666677776 78776 8999999999999999988
Q ss_pred eEEEEe---ecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCce---e-EeeecCCCcEEEEEEcCCCCEEEEEeCCC
Q 013184 270 QLSKHF---SFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKA---I-MPLCGHLDFSFASAWHPDGRIFATGNQDK 342 (448)
Q Consensus 270 ~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~---~-~~l~~h~~~v~~~~~~p~g~~l~s~~~d~ 342 (448)
+....+ .|...|.+++|+|++++|++++.++.|++||+..++. . ....+|...|.+++|+|++++|++++.|+
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 164 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 164 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence 755544 3888999999999999999999999999999988763 2 23356899999999999999999999999
Q ss_pred cEEEEEcc-----------------CCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCc
Q 013184 343 TCRVWDVR-----------------NLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFF 405 (448)
Q Consensus 343 ~i~iwd~~-----------------~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~ 405 (448)
.|++||++ ....++..+..|...|.+++|+|+|++|++++.|+.|++||+.+++.+..+..|.
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 244 (372)
T 1k8k_C 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 244 (372)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence 99999964 1257788888999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEccCCCeEEEEEecCCc
Q 013184 406 GEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 406 ~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
..|.+++|+|++++|++| .|+.+
T Consensus 245 ~~v~~~~~~~~~~~l~~~-~d~~i 267 (372)
T 1k8k_C 245 LPLLAVTFITESSLVAAG-HDCFP 267 (372)
T ss_dssp CCEEEEEEEETTEEEEEE-TTSSC
T ss_pred CCeEEEEEecCCCEEEEE-eCCeE
Confidence 999999999999988877 77665
No 69
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.5e-29 Score=247.29 Aligned_cols=235 Identities=22% Similarity=0.339 Sum_probs=201.4
Q ss_pred eeEEEEe---cCCEEEEEeCCCeEEEEEcCCCCceeEEEee----------cCCCCceeeEEEEeCCCCCeeEEEEeCCC
Q 013184 193 QVSTLAV---RDNLLIAGGFQGELICKYLDQPGVSFCSRTT----------YDENAITNAVEIYNSPSGGIHFMASNNDC 259 (448)
Q Consensus 193 ~i~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~l~s~s~dg 259 (448)
.|.++++ ++++|++|+.||.|++|++............ ..+...+.++.+ +|++..+|++++.||
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~d~ 122 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQW--YPHDTGMFTSSSFDK 122 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEE--CTTCTTCEEEEETTS
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEE--ccCCCcEEEEEeCCC
Confidence 4889988 6799999999999999999877643222211 136666677766 885556899999999
Q ss_pred cEEEEecCCceEEEEeecCCCeeEEEECCC---CCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCC-EE
Q 013184 260 GVRDFDMERFQLSKHFSFPWPVNHTSLSPD---GKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGR-IF 335 (448)
Q Consensus 260 ~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~-~l 335 (448)
.|++||+.+++....+.+...+.++.++|. +.++++++.++.|++||+++++.+..+.+|...|.+++|+|++. +|
T Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll 202 (408)
T 4a11_B 123 TLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYIL 202 (408)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEE
T ss_pred eEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEE
Confidence 999999999999999999999999999984 45999999999999999999999999999999999999999998 59
Q ss_pred EEEeCCCcEEEEEccCCCcceEEE---------------ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----
Q 013184 336 ATGNQDKTCRVWDVRNLSKSVAVL---------------KGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGF---- 396 (448)
Q Consensus 336 ~s~~~d~~i~iwd~~~~~~~~~~~---------------~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~---- 396 (448)
++|+.||.|++||++....++..+ ..|...|.+++|+|+|++|++++.|+.|++||+.++.
T Consensus 203 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 282 (408)
T 4a11_B 203 ATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLV 282 (408)
T ss_dssp EEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCC
T ss_pred EEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcccee
Confidence 999999999999998755566555 5788899999999999999999999999999987653
Q ss_pred -------------------------------------------eeeeeecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 397 -------------------------------------------EKEQEIDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 397 -------------------------------------------~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
.+..+..|.+.|.+++|+|++++|++|+.|+.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 358 (408)
T 4a11_B 283 NYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNI 358 (408)
T ss_dssp CCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred ccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeE
Confidence 233445688999999999999999999999764
No 70
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.8e-30 Score=241.41 Aligned_cols=239 Identities=18% Similarity=0.226 Sum_probs=188.4
Q ss_pred ceeeeCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe----cCCEEEEEeCCC
Q 013184 137 NLVWSTSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV----RDNLLIAGGFQG 211 (448)
Q Consensus 137 ~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~----~~~~lvsg~~dg 211 (448)
.+.+.+.+..++.++ +++|++|++.+.....+..+.||..+ |.++++ ++++|++|+.||
T Consensus 14 ~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~----------------V~~v~~s~~~~g~~l~s~s~D~ 77 (297)
T 2pm7_B 14 DAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGP----------------VWRVDWAHPKFGTILASCSYDG 77 (297)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSC----------------EEEEEECCGGGCSEEEEEETTT
T ss_pred EEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCC----------------eEEEEecCCCcCCEEEEEcCCC
Confidence 445566677777764 77899999865444455566777764 899988 278999999999
Q ss_pred eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCC-CeeEEEEeCCCcEEEEecCCceE--EEEee-cCCCeeEEEEC
Q 013184 212 ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSG-GIHFMASNNDCGVRDFDMERFQL--SKHFS-FPWPVNHTSLS 287 (448)
Q Consensus 212 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~s~dg~v~iwd~~~~~~--~~~~~-~~~~v~~~~~s 287 (448)
+|++|++......... ....|...+.++.+ +|+. +.+|++++.|+.|++||+.++.. ...+. |...|++++|+
T Consensus 78 ~v~iWd~~~~~~~~~~-~~~~h~~~v~~v~~--~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~ 154 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIA-VHAVHSASVNSVQW--APHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 154 (297)
T ss_dssp EEEEEEBSSSCBCCCE-EECCCSSCEEEEEE--CCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEEC
T ss_pred EEEEEEcCCCceEEEE-EeecCCCceeEEEe--CcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeec
Confidence 9999999876422212 23345666777777 7762 34899999999999999986531 23333 88999999999
Q ss_pred CC-------------CCEEEEEecCCcEEEEECCCCc----eeEeeecCCCcEEEEEEcCCC---CEEEEEeCCCcEEEE
Q 013184 288 PD-------------GKLLVIVGDNPEGILVDSQTGK----AIMPLCGHLDFSFASAWHPDG---RIFATGNQDKTCRVW 347 (448)
Q Consensus 288 p~-------------~~~l~~~~~d~~i~i~d~~~~~----~~~~l~~h~~~v~~~~~~p~g---~~l~s~~~d~~i~iw 347 (448)
|+ +++|++++.|+.|++||+++++ ....+.+|...|.+++|+|++ .+|++++.|++|+||
T Consensus 155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp CCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 96 5799999999999999998876 567788999999999999985 899999999999999
Q ss_pred EccCCCc--ceEEE--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 013184 348 DVRNLSK--SVAVL--KGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 348 d~~~~~~--~~~~~--~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~ 394 (448)
|++.... ....+ ..|...|.+++|+|+|++||+++.|+.|+||+...
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 9976322 12233 46788999999999999999999999999999763
No 71
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=4.6e-30 Score=247.10 Aligned_cols=236 Identities=15% Similarity=0.128 Sum_probs=197.2
Q ss_pred eeEEEEe--c---CCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecC
Q 013184 193 QVSTLAV--R---DNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDME 267 (448)
Q Consensus 193 ~i~~l~~--~---~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~ 267 (448)
.|+++++ + +++|++|+.||.|++|++...+..... ....|...+.++.+ +|++. +|++++.||.|++||+.
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~h~~~v~~~~~--~~~~~-~l~s~~~dg~v~iwd~~ 116 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK-AQQMHTGPVLDVCW--SDDGS-KVFTASCDKTAKMWDLS 116 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE-EEEECSSCEEEEEE--CTTSS-EEEEEETTSEEEEEETT
T ss_pred ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE-EeccccCCEEEEEE--CcCCC-EEEEEcCCCcEEEEEcC
Confidence 5999999 4 589999999999999999875543322 33345666677776 88876 89999999999999999
Q ss_pred CceEEEEeecCCCeeEEEE--CCCCCEEEEEecCCcEEEEECCCCceeEeeecCC-------------------------
Q 013184 268 RFQLSKHFSFPWPVNHTSL--SPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHL------------------------- 320 (448)
Q Consensus 268 ~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~------------------------- 320 (448)
+++.+....|..+|.+++| +|++++|++++.|+.|++||+++++.+..+..|.
T Consensus 117 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (368)
T 3mmy_A 117 SNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQ 196 (368)
T ss_dssp TTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEE
T ss_pred CCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEE
Confidence 9999888889999999999 8999999999999999999999988776665443
Q ss_pred ----------------CcEEEEEEcCCCCE----EEEEeCCCcEEEEEccCCC--cceEEEccCCC------------Ce
Q 013184 321 ----------------DFSFASAWHPDGRI----FATGNQDKTCRVWDVRNLS--KSVAVLKGNLG------------AI 366 (448)
Q Consensus 321 ----------------~~v~~~~~~p~g~~----l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~------------~v 366 (448)
..+.++++.+++.. +++++.|+.|++|+++... ..+..+.+|.. +|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 276 (368)
T 3mmy_A 197 LENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAV 276 (368)
T ss_dssp CSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCE
T ss_pred eccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccce
Confidence 22334444443333 9999999999999998632 56677777776 79
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceE
Q 013184 367 RSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSL 432 (448)
Q Consensus 367 ~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~l 432 (448)
.+++|+|+|++|++++.||.|+|||+.++..+..+..|.+.|.+++|+|+|++|++++.|+....+
T Consensus 277 ~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 277 NGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp EEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred EEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 999999999999999999999999999999998888999999999999999999999998765543
No 72
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.98 E-value=3.5e-29 Score=250.04 Aligned_cols=256 Identities=17% Similarity=0.217 Sum_probs=212.7
Q ss_pred CCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-cCCEEEEEeCCCeEEEEEcCC
Q 013184 143 SKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-RDNLLIAGGFQGELICKYLDQ 220 (448)
Q Consensus 143 ~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-~~~~lvsg~~dg~i~vw~~~~ 220 (448)
+.+.++.+ .++.|++|+..+++ .+..+.+|.. .|.++++ .+.+|++|+.||+|++|++.+
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~~--~~~~~~~h~~----------------~V~~l~~~~~~~l~s~s~dg~i~vwd~~~ 192 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINKK--FLLQLSGHDG----------------GVWALKYAHGGILVSGSTDRTVRVWDIKK 192 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTE--EEEEECCCSS----------------CEEEEEECSTTEEEEEETTSCEEEEETTT
T ss_pred CCCEEEEEcCCCcEEEEECCCCc--EEEEEeCCCc----------------CEEEEEEcCCCEEEEEeCCCCEEEEECCC
Confidence 34455554 57789999987654 4455566665 3899998 455999999999999999987
Q ss_pred CCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceE-----------------------EEEee-
Q 013184 221 PGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQL-----------------------SKHFS- 276 (448)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~-----------------------~~~~~- 276 (448)
... ......|...+.++.+...+++. ++++++.|+.|++||+.+++. ...+.
T Consensus 193 ~~~---~~~~~~h~~~v~~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 193 GCC---THVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp TEE---EEEECCCSSCEEEEEEEESSSCE-EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred CcE---EEEECCCCCccEEEEEecCCCCC-EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 653 33444567778888886666654 899999999999999987652 22333
Q ss_pred cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcce
Q 013184 277 FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSV 356 (448)
Q Consensus 277 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~ 356 (448)
|...|.++ +++++++++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|+.|++||+++ ++++
T Consensus 269 ~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~ 345 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELM 345 (464)
T ss_dssp CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEE
T ss_pred ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEE
Confidence 66777766 57799999999999999999999999999999999999999999999999999999999999987 8899
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecC
Q 013184 357 AVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 357 ~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
..+.+|...|.+++|+ +++|++++.||.|++||+.++...... .+...+..++|+|++++|++|+ |+
T Consensus 346 ~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg 412 (464)
T 3v7d_B 346 YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS-EN 412 (464)
T ss_dssp EEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TT
T ss_pred EEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEec-CC
Confidence 9999999999999997 589999999999999999987765544 3667788899999999999987 64
No 73
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.98 E-value=6.1e-29 Score=247.19 Aligned_cols=253 Identities=18% Similarity=0.255 Sum_probs=215.3
Q ss_pred CCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcCCCC
Q 013184 144 KHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQPG 222 (448)
Q Consensus 144 ~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~ 222 (448)
.+.++.+ .++.|++|+..+++ .+..+.+|.. .|.+++++++.|++|+.||.|++|++.+..
T Consensus 169 ~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~h~~----------------~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~ 230 (445)
T 2ovr_B 169 DNIIISGSTDRTLKVWNAETGE--CIHTLYGHTS----------------TVRCMHLHEKRVVSGSRDATLRVWDIETGQ 230 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTTE--EEEEECCCSS----------------CEEEEEEETTEEEEEETTSEEEEEESSSCC
T ss_pred CCEEEEEeCCCeEEEEECCcCc--EEEEECCCCC----------------cEEEEEecCCEEEEEeCCCEEEEEECCCCc
Confidence 3445554 47789999987654 4444556555 489999999999999999999999998766
Q ss_pred ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCc
Q 013184 223 VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPE 301 (448)
Q Consensus 223 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~ 301 (448)
.. .....+...+.++.+ ++. .+++|+.||.|++||+.+++++..+. |...|.+++| ++..+++++.|+.
T Consensus 231 ~~---~~~~~~~~~v~~~~~----~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~ 300 (445)
T 2ovr_B 231 CL---HVLMGHVAAVRCVQY----DGR-RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS 300 (445)
T ss_dssp EE---EEEECCSSCEEEEEE----CSS-CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC
T ss_pred EE---EEEcCCcccEEEEEE----CCC-EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCe
Confidence 43 223345666667765 343 89999999999999999999998888 8899999999 7899999999999
Q ss_pred EEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEcc---CCCCeEEEEEcCCCCEE
Q 013184 302 GILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKG---NLGAIRSIRFTSDGNFM 378 (448)
Q Consensus 302 i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~l~~sp~g~~l 378 (448)
|++||+++++.+..+.+|...+.++.++ +++|++|+.||.|++||+++ ++++..+.. |..+|.+++|+ +++|
T Consensus 301 i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~--~~~l 375 (445)
T 2ovr_B 301 IRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQSAVTCLQFN--KNFV 375 (445)
T ss_dssp EEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTT-CCEEEEECSTTSCSSCEEEEEEC--SSEE
T ss_pred EEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCC-CcEEEEEccCCCCCCCEEEEEEC--CCEE
Confidence 9999999999999999999999988874 67999999999999999987 778888876 88899999996 5899
Q ss_pred EEEeCCCeEEEEECCCCceeeee-----ecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 379 AMAEPADFVHVYDAKNGFEKEQE-----IDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 379 ~s~~~d~~v~vwd~~~~~~~~~~-----~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
++|+.||.|++||+.+++.+..+ ..|.+.|++++|+|+|.+|++|+.|++.
T Consensus 376 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~ 431 (445)
T 2ovr_B 376 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE 431 (445)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSS
T ss_pred EEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCC
Confidence 99999999999999999888776 3577899999999999999999999873
No 74
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.3e-31 Score=267.02 Aligned_cols=227 Identities=7% Similarity=-0.033 Sum_probs=180.0
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeE-EEeecCCCCceeeEEEEeCCCC-----CeeEEEEeCCCcEEEEecCCceE--
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFC-SRTTYDENAITNAVEIYNSPSG-----GIHFMASNNDCGVRDFDMERFQL-- 271 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-----~~~l~s~s~dg~v~iwd~~~~~~-- 271 (448)
+++.|++|+.||+|++|++........ .....++.+.+..+.| +|.+ ..+|++++.||+|++||+.+++.
T Consensus 172 ~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~w--sp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 172 HLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKW--HEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEE--CSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred hhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEE--CCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 456789999999999999987654321 1223445566777776 6651 24899999999999999976532
Q ss_pred ---------EEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCc-eeEeeecCCCcEEEE--EEcCCC-CEEEE
Q 013184 272 ---------SKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGK-AIMPLCGHLDFSFAS--AWHPDG-RIFAT 337 (448)
Q Consensus 272 ---------~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~-~~~~l~~h~~~v~~~--~~~p~g-~~l~s 337 (448)
...+. |...|.+++|+|+ ..|++|+.||+|++||+++++ +...+.+|...|.++ +|+|+| .+|||
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS 328 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVST 328 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEE
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEE
Confidence 12344 7889999999986 489999999999999999774 456688999999999 578888 89999
Q ss_pred EeCCCcEEEEEccCCCcceEEEccCCC--CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEcc
Q 013184 338 GNQDKTCRVWDVRNLSKSVAVLKGNLG--AIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSP 415 (448)
Q Consensus 338 ~~~d~~i~iwd~~~~~~~~~~~~~~~~--~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fsp 415 (448)
|+.|++|+|||+++ .+++..+.+|.. .|.+++|+|+++.|++++.|++|++||++++..+..+.+|.+.|++++|+|
T Consensus 329 ~S~D~tvklWD~~~-~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp 407 (524)
T 2j04_B 329 VAVDGYFYIFNPKD-IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR 407 (524)
T ss_dssp EETTSEEEEECGGG-HHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS
T ss_pred eccCCeEEEEECCC-CCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC
Confidence 99999999999987 666666766653 588999999999999999999999999999988888889999999999999
Q ss_pred CCCeEEEEEecCCcc
Q 013184 416 DTEALFIGVWDRTYG 430 (448)
Q Consensus 416 dg~~L~~~~~D~~~~ 430 (448)
+|++|++|+.|+++.
T Consensus 408 ~g~~l~Sgs~Dgtv~ 422 (524)
T 2j04_B 408 LHPMVLAGSADGSLI 422 (524)
T ss_dssp SCCBCEEEETTTEEE
T ss_pred CCCeEEEEECCCEEE
Confidence 999999999998764
No 75
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.5e-30 Score=247.37 Aligned_cols=261 Identities=11% Similarity=0.002 Sum_probs=195.3
Q ss_pred CeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcCCCC-
Q 013184 145 HDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQPG- 222 (448)
Q Consensus 145 ~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~- 222 (448)
+.++.+ .++.|++|++.+++....+... .|.++.+... +++|+.||+|++|+.....
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~--------------------~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~ 107 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKDSKTITTITTP--------------------NPRTGGEHPA-IISRGPCNRLLLLYPGNQIT 107 (343)
T ss_dssp EEEEEEEETTEEEEEEESSSSCEEEEEEE--------------------CCCTTCCCCS-EEEECSTTEEEEEETTTEEE
T ss_pred CEEEEECCCCcEEEEECCCCcEEEEEecC--------------------CceeeeeCCc-eEEecCCCeEEEEEccCceE
Confidence 334444 5888999999877665554411 2444444333 9999999999999766321
Q ss_pred ------ceeEEEeecCCCCceeeEEEEeCC--CCCeeEEEEeCCCcEEEEecCCceEEEEee--cCCCeeEEEECCCCCE
Q 013184 223 ------VSFCSRTTYDENAITNAVEIYNSP--SGGIHFMASNNDCGVRDFDMERFQLSKHFS--FPWPVNHTSLSPDGKL 292 (448)
Q Consensus 223 ------~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~ 292 (448)
..........+...+.++.+ +| ++. ++++++.||.|++||+++++...... +...|.+++|+|++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~ 184 (343)
T 3lrv_A 108 ILDSKTNKVLREIEVDSANEIIYMYG--HNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLL 184 (343)
T ss_dssp EEETTTCCEEEEEECCCSSCEEEEEC--CC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCE
T ss_pred EeecCCcceeEEeecCCCCCEEEEEc--CCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCE
Confidence 11112333344455666655 78 765 89999999999999999998876664 5667999999999999
Q ss_pred EEEEecCCcEEEEECCCCcee-Eeeec-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEcc---CCCCeE
Q 013184 293 LVIVGDNPEGILVDSQTGKAI-MPLCG-HLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKG---NLGAIR 367 (448)
Q Consensus 293 l~~~~~d~~i~i~d~~~~~~~-~~l~~-h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~ 367 (448)
|++|+.|+.|++||+++++.+ ..+.+ |...|.+++|+|+|.+|++++ ++.|++||+++ ...+..+.. |...+.
T Consensus 185 lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~-~~~~~~~~~~~~~~~~~~ 262 (343)
T 3lrv_A 185 LALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRK-DVGTLAYPTYTIPEFKTG 262 (343)
T ss_dssp EEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTS-STTCBSSCCCBC-----C
T ss_pred EEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCC-CCcceeeccccccccccc
Confidence 999999999999999999987 78888 999999999999999999999 45999999987 444433332 434444
Q ss_pred --EEEEcCCCCEEEEEeC-CCeEEEEECCCCceeeeeecCcCceEEEEEcc---CCCeEEEEEecCCcceEEEE
Q 013184 368 --SIRFTSDGNFMAMAEP-ADFVHVYDAKNGFEKEQEIDFFGEISGMTFSP---DTEALFIGVWDRTYGSLLQY 435 (448)
Q Consensus 368 --~l~~sp~g~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fsp---dg~~L~~~~~D~~~~~ll~~ 435 (448)
+++|+|+|++|++++. ++.|+||++......... .++..++|+| +++.|++++.|+.+.-++..
T Consensus 263 ~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 263 TVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred ceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 6999999999999998 999999999766543332 5678889999 89999999999876655543
No 76
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=3.8e-30 Score=251.21 Aligned_cols=231 Identities=12% Similarity=0.115 Sum_probs=197.0
Q ss_pred eeEEEEecCCEEEEEeCCCeEEEEEcCCCC----ceeEEEeecCCCCceeeEEEEeCCC----C--CeeEEEEeCCCcEE
Q 013184 193 QVSTLAVRDNLLIAGGFQGELICKYLDQPG----VSFCSRTTYDENAITNAVEIYNSPS----G--GIHFMASNNDCGVR 262 (448)
Q Consensus 193 ~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~----~--~~~l~s~s~dg~v~ 262 (448)
.|+++++..++|++|+.||.|++|++.... ......+. .|...+.++.+ +|+ + ..+|++++.|+.|+
T Consensus 18 ~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~--~~~~~~~g~~~~~l~s~~~dg~i~ 94 (397)
T 1sq9_A 18 DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDV--LQAIERDAFELCLVATTSFSGDLL 94 (397)
T ss_dssp CEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEE--EEEEETTTEEEEEEEEEETTSCEE
T ss_pred CeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEE--ecccccCCccccEEEEEcCCCCEE
Confidence 499999978999999999999999998876 11223333 55666677777 566 4 04899999999999
Q ss_pred EEecCCceE-----EEEee-c-----CCCeeEEEEC----CCCCE-EEEEecCCcEEEEECCC------CceeE-----e
Q 013184 263 DFDMERFQL-----SKHFS-F-----PWPVNHTSLS----PDGKL-LVIVGDNPEGILVDSQT------GKAIM-----P 315 (448)
Q Consensus 263 iwd~~~~~~-----~~~~~-~-----~~~v~~~~~s----p~~~~-l~~~~~d~~i~i~d~~~------~~~~~-----~ 315 (448)
+|++.+++. ...+. | ...|.+++|+ |++++ |++++.++.|++||+.+ ++.+. .
T Consensus 95 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 174 (397)
T 1sq9_A 95 FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE 174 (397)
T ss_dssp EEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEE
T ss_pred EEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcce
Confidence 999988774 55555 6 4899999999 99999 99999999999999998 66666 6
Q ss_pred ee-------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEcc---C---CCCeEEEEEcCCCCEEEEEe
Q 013184 316 LC-------GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKG---N---LGAIRSIRFTSDGNFMAMAE 382 (448)
Q Consensus 316 l~-------~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~---~~~v~~l~~sp~g~~l~s~~ 382 (448)
+. .|...+.+++|+|++ +|++++.|+.|++||+++ .+++..+.. | ..+|.+++|+|++++|++++
T Consensus 175 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~ 252 (397)
T 1sq9_A 175 LQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 252 (397)
T ss_dssp EEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE
T ss_pred eeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-CceeEEEeccccccccCCccceEEECCCCCEEEEEe
Confidence 74 488999999999999 999999999999999987 788888888 8 99999999999999999999
Q ss_pred CC---CeEEEEECCCCceeeeeec-------------CcCceEEEEEccCCCeEEEEEecCC
Q 013184 383 PA---DFVHVYDAKNGFEKEQEID-------------FFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 383 ~d---~~v~vwd~~~~~~~~~~~~-------------~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
.+ +.|++||+.+++.+..+.. |...|.+++|+|++++|++++.|+.
T Consensus 253 ~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 314 (397)
T 1sq9_A 253 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK 314 (397)
T ss_dssp EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE
T ss_pred cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe
Confidence 99 9999999999998888888 9999999999999999999998864
No 77
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=2.4e-30 Score=245.74 Aligned_cols=238 Identities=17% Similarity=0.174 Sum_probs=189.8
Q ss_pred ceeeeCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe----cCCEEEEEeCCC
Q 013184 137 NLVWSTSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV----RDNLLIAGGFQG 211 (448)
Q Consensus 137 ~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~----~~~~lvsg~~dg 211 (448)
.+.+.+.+..++.++ +++|++|++.++....+..+.||..+ |.++++ ++++|++|+.||
T Consensus 18 ~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~----------------V~~v~~~~~~~~~~l~s~s~D~ 81 (316)
T 3bg1_A 18 DAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGP----------------VWQVAWAHPMYGNILASCSYDR 81 (316)
T ss_dssp EEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSC----------------EEEEEECCGGGSSCEEEEETTS
T ss_pred EeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCcc----------------EEEEEeCCCCCCCEEEEEECCC
Confidence 344556666676664 77899999876655556667787764 899988 278999999999
Q ss_pred eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCC-CeeEEEEeCCCcEEEEecCCceE---EEEee-cCCCeeEEEE
Q 013184 212 ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSG-GIHFMASNNDCGVRDFDMERFQL---SKHFS-FPWPVNHTSL 286 (448)
Q Consensus 212 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~s~dg~v~iwd~~~~~~---~~~~~-~~~~v~~~~~ 286 (448)
+|++|++.+..... ......|...+.++++ +|++ ..+|++|+.|+.|++|++..+.. ...+. |...|.+++|
T Consensus 82 ~v~iWd~~~~~~~~-~~~~~~h~~~V~~v~~--~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~ 158 (316)
T 3bg1_A 82 KVIIWREENGTWEK-SHEHAGHDSSVNSVCW--APHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSW 158 (316)
T ss_dssp CEEEECCSSSCCCE-EEEECCCSSCCCEEEE--CCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEE
T ss_pred EEEEEECCCCcceE-EEEccCCCCceEEEEE--CCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEE
Confidence 99999998754322 2233456667778877 7762 34899999999999999987532 22333 7888999999
Q ss_pred CCC-----------------CCEEEEEecCCcEEEEECCCC---ceeEeeecCCCcEEEEEEcCCC----CEEEEEeCCC
Q 013184 287 SPD-----------------GKLLVIVGDNPEGILVDSQTG---KAIMPLCGHLDFSFASAWHPDG----RIFATGNQDK 342 (448)
Q Consensus 287 sp~-----------------~~~l~~~~~d~~i~i~d~~~~---~~~~~l~~h~~~v~~~~~~p~g----~~l~s~~~d~ 342 (448)
+|+ +++|++++.|+.|++||++.+ +.+..+.+|...|.+++|+|++ .+|++|+.|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~ 238 (316)
T 3bg1_A 159 APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG 238 (316)
T ss_dssp CCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC
T ss_pred ccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC
Confidence 997 478999999999999999765 4677889999999999999986 8999999999
Q ss_pred cEEEEEccCCC---cceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 013184 343 TCRVWDVRNLS---KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAK 393 (448)
Q Consensus 343 ~i~iwd~~~~~---~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~ 393 (448)
+|+||+++... .....+..|...|.+++|+|+|++||+|+.|+.|+||+..
T Consensus 239 ~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 239 RVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred eEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 99999997521 1234566788999999999999999999999999999975
No 78
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=3.4e-29 Score=267.27 Aligned_cols=267 Identities=12% Similarity=0.107 Sum_probs=223.8
Q ss_pred cceeeeCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCe
Q 013184 136 RNLVWSTSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGE 212 (448)
Q Consensus 136 r~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~ 212 (448)
..+.+.+.+..+++++ ++.|++|+..++..... +.+|.. .|.++++ ++++|++|+.||.
T Consensus 17 ~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~--~~~~~~----------------~v~~~~~s~~~~~l~~~~~dg~ 78 (814)
T 3mkq_A 17 KGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS--IQVTET----------------PVRAGKFIARKNWIIVGSDDFR 78 (814)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE--EECCSS----------------CEEEEEEEGGGTEEEEEETTSE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE--EecCCC----------------cEEEEEEeCCCCEEEEEeCCCe
Confidence 3455777777777764 67899999877554443 344544 3888888 8899999999999
Q ss_pred EEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc-eEEEEee-cCCCeeEEEECC-C
Q 013184 213 LICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF-QLSKHFS-FPWPVNHTSLSP-D 289 (448)
Q Consensus 213 i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~-~~~~v~~~~~sp-~ 289 (448)
|++|++.+.... .....|...+.++.+ +|++. +|++++.||.|++|++.++ .....+. |..+|.+++|+| +
T Consensus 79 i~vw~~~~~~~~---~~~~~~~~~v~~~~~--s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 152 (814)
T 3mkq_A 79 IRVFNYNTGEKV---VDFEAHPDYIRSIAV--HPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152 (814)
T ss_dssp EEEEETTTCCEE---EEEECCSSCEEEEEE--CSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTE
T ss_pred EEEEECCCCcEE---EEEecCCCCEEEEEE--eCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCC
Confidence 999999877643 223345666667766 88887 7899999999999999886 6666666 889999999999 8
Q ss_pred CCEEEEEecCCcEEEEECCCCceeEeeecCC-CcEEEEEEcC--CCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCe
Q 013184 290 GKLLVIVGDNPEGILVDSQTGKAIMPLCGHL-DFSFASAWHP--DGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAI 366 (448)
Q Consensus 290 ~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-~~v~~~~~~p--~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v 366 (448)
+..+++++.|+.|++||+.+++....+..+. ..+.+++|+| ++.+|++++.||.|++||+++ +.++..+.+|...|
T Consensus 153 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~v 231 (814)
T 3mkq_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNV 231 (814)
T ss_dssp EEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT-TEEEEEEECCSSCE
T ss_pred CCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC-CcEEEEEcCCCCCE
Confidence 9999999999999999999988887777655 8899999999 999999999999999999987 78888999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeE-EEEEecC
Q 013184 367 RSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEAL-FIGVWDR 427 (448)
Q Consensus 367 ~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L-~~~~~D~ 427 (448)
.+++|+|+|++|++++.||.|++||+.++.....+..|...+.+++|+|+|..+ ++++.|+
T Consensus 232 ~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 293 (814)
T 3mkq_A 232 SFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293 (814)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETT
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCC
Confidence 999999999999999999999999999999988888899999999999999742 3444443
No 79
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=2.4e-29 Score=249.50 Aligned_cols=253 Identities=17% Similarity=0.244 Sum_probs=212.2
Q ss_pred CCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcCCC
Q 013184 143 SKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQP 221 (448)
Q Consensus 143 ~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~ 221 (448)
.+..++.+ .++.|++||..+++. +..+.+|.. .|.++++++++|++|+.||.|++|++.+.
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~h~~----------------~v~~l~~~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTLEC--KRILTGHTG----------------SVLCLQYDERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCE--EEEECCCSS----------------CEEEEECCSSEEEEEETTSCEEEEESSSC
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeE--EEEEcCCCC----------------cEEEEEECCCEEEEEcCCCeEEEEECCCC
Confidence 44455554 577899999876544 344556655 48999999999999999999999999877
Q ss_pred CceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEE---EEee-cCCCeeEEEECCCCCEEEEEe
Q 013184 222 GVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLS---KHFS-FPWPVNHTSLSPDGKLLVIVG 297 (448)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~---~~~~-~~~~v~~~~~sp~~~~l~~~~ 297 (448)
... .....|...+.++.+ + +. .+++|+.||.|++||+.+++.. ..+. |...|.+++| +++++++++
T Consensus 204 ~~~---~~~~~h~~~v~~l~~--~--~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~ 273 (435)
T 1p22_A 204 EML---NTLIHHCEAVLHLRF--N--NG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS 273 (435)
T ss_dssp CEE---EEECCCCSCEEEEEC--C--TT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred cEE---EEEcCCCCcEEEEEE--c--CC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEe
Confidence 643 233355666666655 3 33 8999999999999999887644 3333 8899999999 689999999
Q ss_pred cCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCE
Q 013184 298 DNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNF 377 (448)
Q Consensus 298 ~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~ 377 (448)
.|+.|++||+++++.+..+.+|...|.+++| ++.++++|+.||.|++||+++ +.++..+.+|...|.+++| ++.+
T Consensus 274 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~--~~~~ 348 (435)
T 1p22_A 274 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRCIRF--DNKR 348 (435)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEC--CSSE
T ss_pred CCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCC-CCEEEEEeCCcCcEEEEEe--cCCE
Confidence 9999999999999999999999999999999 478999999999999999987 7889999999999999998 7899
Q ss_pred EEEEeCCCeEEEEECCCCc---------eeeeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 378 MAMAEPADFVHVYDAKNGF---------EKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 378 l~s~~~d~~v~vwd~~~~~---------~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
|++|+.||.|++||+.++. ....+..|.+.|.+++| ++++|++|+.|+++.
T Consensus 349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~ 408 (435)
T 1p22_A 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTIL 408 (435)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEE
T ss_pred EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEE
Confidence 9999999999999997665 67778889999999999 788999999997643
No 80
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=4.3e-30 Score=254.94 Aligned_cols=229 Identities=17% Similarity=0.189 Sum_probs=186.8
Q ss_pred eeEEEEe---cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc
Q 013184 193 QVSTLAV---RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF 269 (448)
Q Consensus 193 ~i~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~ 269 (448)
.|++|++ ++++||+|+.||.|++|++.......... ...|...+.+++| +|.+..+|++|+.||+|++||++++
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~-~~gH~~~V~~l~f--~p~~~~~l~s~s~D~~v~iwd~~~~ 197 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK-GIGAGGSITGLKF--NPLNTNQFYASSMEGTTRLQDFKGN 197 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC-CCSSSCCCCEEEE--CSSCTTEEEEECSSSCEEEEETTSC
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE-ccCCCCCEEEEEE--eCCCCCEEEEEeCCCEEEEeeccCC
Confidence 5999999 46799999999999999998776443232 3356666778877 8765558999999999999999876
Q ss_pred eEEEEee---cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCC-EEEEEeCCCcEE
Q 013184 270 QLSKHFS---FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGR-IFATGNQDKTCR 345 (448)
Q Consensus 270 ~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~-~l~s~~~d~~i~ 345 (448)
....... +...+.+++|+|++++|++|+.++.|++||++ ++.+..+.+|...|.+++|+|++. +|++|+.|++|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~ 276 (435)
T 4e54_B 198 ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276 (435)
T ss_dssp EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCC
T ss_pred ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceee
Confidence 6544443 34567899999999999999999999999986 456778899999999999999876 788999999999
Q ss_pred EEEccCCCc--ceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcC------ceEEEEEccCC
Q 013184 346 VWDVRNLSK--SVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFG------EISGMTFSPDT 417 (448)
Q Consensus 346 iwd~~~~~~--~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~------~v~~~~fspdg 417 (448)
|||+++... .+....+|..+|++++|+|+|++|++++.|+.|+|||+.++.....+..|.. .+..+.|+|++
T Consensus 277 iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (435)
T 4e54_B 277 IWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRY 356 (435)
T ss_dssp EEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSS
T ss_pred EEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCC
Confidence 999986332 2334467899999999999999999999999999999999887776665542 24456788888
Q ss_pred CeEEEEEe
Q 013184 418 EALFIGVW 425 (448)
Q Consensus 418 ~~L~~~~~ 425 (448)
..+++++.
T Consensus 357 ~~~~~~~~ 364 (435)
T 4e54_B 357 NLIVVGRY 364 (435)
T ss_dssp SCEEEECC
T ss_pred CEEEEEEc
Confidence 88887743
No 81
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=6.5e-29 Score=241.76 Aligned_cols=207 Identities=14% Similarity=0.178 Sum_probs=173.3
Q ss_pred eeEEEEe--cC-CEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc
Q 013184 193 QVSTLAV--RD-NLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF 269 (448)
Q Consensus 193 ~i~~l~~--~~-~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~ 269 (448)
.|.++++ ++ ++|++|+.||.|++|++.......... ...+...+.++.+ +|.+..+|++++.|+.|++||+.+.
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~h~~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ-GMGPGDAITGMKF--NQFNTNQLFVSSIRGATTLRDFSGS 151 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC-CCSTTCBEEEEEE--ETTEEEEEEEEETTTEEEEEETTSC
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee-cCCcCCceeEEEe--CCCCCCEEEEEeCCCEEEEEECCCC
Confidence 4899988 55 899999999999999998776543222 2246666777776 7855569999999999999999975
Q ss_pred eEEEEee---cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCC-EEEEEeCCCcEE
Q 013184 270 QLSKHFS---FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGR-IFATGNQDKTCR 345 (448)
Q Consensus 270 ~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~-~l~s~~~d~~i~ 345 (448)
....... +...|.+++|+|++++|++++.|+.|++||+ +++.+..+.+|...|.+++|+|+++ +|++++.|+.|+
T Consensus 152 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 230 (383)
T 3ei3_B 152 VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVK 230 (383)
T ss_dssp EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEE
Confidence 4433333 3478999999999999999999999999998 5788889999999999999999999 999999999999
Q ss_pred EEEccCC---CcceEEEccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeeeecC
Q 013184 346 VWDVRNL---SKSVAVLKGNLGAIRSIRFTS-DGNFMAMAEPADFVHVYDAKNGFEKEQEIDF 404 (448)
Q Consensus 346 iwd~~~~---~~~~~~~~~~~~~v~~l~~sp-~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~ 404 (448)
+||+++. ..++..+ +|...|.+++|+| +|++|++++.|+.|++||+.++.....+..|
T Consensus 231 iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 292 (383)
T 3ei3_B 231 LWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH 292 (383)
T ss_dssp EEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred EEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccc
Confidence 9999863 2344445 6999999999999 9999999999999999999988776666544
No 82
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=251.63 Aligned_cols=233 Identities=16% Similarity=0.215 Sum_probs=187.1
Q ss_pred eeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCc--------eeEEEeecCCC------------CceeeEEEEeCCCCC
Q 013184 192 TQVSTLAV--RDNLLIAGGFQGELICKYLDQPGV--------SFCSRTTYDEN------------AITNAVEIYNSPSGG 249 (448)
Q Consensus 192 ~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~--------~~~~~~~~~~~------------~~~~~v~~~~~~~~~ 249 (448)
..|+++++ ++++|++|+.||.|++|++..... .........|. ..+.++.+ +|++.
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~--~~~~~ 106 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW--LPQKN 106 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE--CCCCS
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE--cCCCC
Confidence 46899998 889999999999999999986541 11122233454 55677776 78763
Q ss_pred -eeEEEEeCCCcEEEEecCCceEE---------------------------------------EEe--ecCCCeeEEEEC
Q 013184 250 -IHFMASNNDCGVRDFDMERFQLS---------------------------------------KHF--SFPWPVNHTSLS 287 (448)
Q Consensus 250 -~~l~s~s~dg~v~iwd~~~~~~~---------------------------------------~~~--~~~~~v~~~~~s 287 (448)
.+|++++.|+.|++|++.+++.. ..+ .|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 38999999999999999775442 122 388999999999
Q ss_pred CCCCEEEEEecCCcEEEEECCC-CceeE-------eeecCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEEccCCCcc---
Q 013184 288 PDGKLLVIVGDNPEGILVDSQT-GKAIM-------PLCGHLDFSFASAWHPDG-RIFATGNQDKTCRVWDVRNLSKS--- 355 (448)
Q Consensus 288 p~~~~l~~~~~d~~i~i~d~~~-~~~~~-------~l~~h~~~v~~~~~~p~g-~~l~s~~~d~~i~iwd~~~~~~~--- 355 (448)
|++++|+++ .|+.|++||+.+ ++.+. .+.+|...|.+++|+|++ ++|++|+.|+.|++||+++ ...
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~ 264 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALCDR 264 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSSCT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-Cccccc
Confidence 999999998 799999999984 44444 356899999999999998 9999999999999999987 444
Q ss_pred -eEEEccCCC------------CeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeeeeecCcCc--------------
Q 013184 356 -VAVLKGNLG------------AIRSIRFTSDGNFMAMAEPADFVHVYDAKN-GFEKEQEIDFFGE-------------- 407 (448)
Q Consensus 356 -~~~~~~~~~------------~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~-------------- 407 (448)
+..+..|.. .|.+++|+|+|++|++++. +.|+|||+.+ ++.+..+..|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 688888876 8999999999999999999 9999999997 7777777777532
Q ss_pred -eEEEEEccCCCeEEEEEecCCc
Q 013184 408 -ISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 408 -v~~~~fspdg~~L~~~~~D~~~ 429 (448)
+..++|+|+|++|++|+.|+.+
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v 366 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFF 366 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEE
T ss_pred cceEEEECCCCCEEEEeccCCEE
Confidence 3349999999999999988653
No 83
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=6.2e-28 Score=230.11 Aligned_cols=251 Identities=17% Similarity=0.193 Sum_probs=204.7
Q ss_pred EEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--c-CCEEEEEeCCCeEEEEEcCCCCc--eeEEEee
Q 013184 156 VHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--R-DNLLIAGGFQGELICKYLDQPGV--SFCSRTT 230 (448)
Q Consensus 156 ~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~-~~~lvsg~~dg~i~vw~~~~~~~--~~~~~~~ 230 (448)
..+...+........+.||..+ |++|++ + +++|++|+.||+|++|++..... ..+....
T Consensus 19 ~~~~~~~~~~~l~~tL~GH~~~----------------V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l 82 (340)
T 4aow_A 19 YFQSMMTEQMTLRGTLKGHNGW----------------VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL 82 (340)
T ss_dssp -------CEEEEEEEECCCSSC----------------EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE
T ss_pred EEEEccCCceEEEEEECCccCC----------------EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE
Confidence 3444444444444567888875 999999 3 57999999999999999987653 2334445
Q ss_pred cCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCC
Q 013184 231 YDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQT 309 (448)
Q Consensus 231 ~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~ 309 (448)
..|...+.++.+ +|++. +|++++.|+.|++|+........... +...+..+.++|++.+|++++.|+.+++||...
T Consensus 83 ~~h~~~V~~~~~--s~dg~-~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~ 159 (340)
T 4aow_A 83 RGHSHFVSDVVI--SSDGQ-FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG 159 (340)
T ss_dssp CCCSSCEEEEEE--CTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS
T ss_pred eCCCCCEEEEEE--CCCCC-EEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCC
Confidence 566777777776 88876 89999999999999999888777766 778899999999999999999999999999876
Q ss_pred Cce-eEeeecCCCcEEEEEEcCCC--CEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 013184 310 GKA-IMPLCGHLDFSFASAWHPDG--RIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADF 386 (448)
Q Consensus 310 ~~~-~~~l~~h~~~v~~~~~~p~g--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~ 386 (448)
... ...+.+|...+..++|++++ .++++++.|+.|++||+++ .+++..+.+|.++|++++|+|+|++|++|+.|+.
T Consensus 160 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~ 238 (340)
T 4aow_A 160 VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ 238 (340)
T ss_dssp CEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred CceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC-CceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence 654 34466899999999999865 5789999999999999987 7888999999999999999999999999999999
Q ss_pred EEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 387 VHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 387 v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
|++||+.+.+.+..+. +...|..++|+|++.+ ++++.|+.
T Consensus 239 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~-~~~~~d~~ 278 (340)
T 4aow_A 239 AMLWDLNEGKHLYTLD-GGDIINALCFSPNRYW-LCAATGPS 278 (340)
T ss_dssp EEEEETTTTEEEEEEE-CSSCEEEEEECSSSSE-EEEEETTE
T ss_pred EEEEEeccCceeeeec-CCceEEeeecCCCCce-eeccCCCE
Confidence 9999999988776665 4568999999998765 45666754
No 84
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2e-29 Score=249.81 Aligned_cols=233 Identities=15% Similarity=0.193 Sum_probs=194.4
Q ss_pred eeEEEEe--c-CCEEEEEeCCCeEEEEEcCCC--------CceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcE
Q 013184 193 QVSTLAV--R-DNLLIAGGFQGELICKYLDQP--------GVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGV 261 (448)
Q Consensus 193 ~i~~l~~--~-~~~lvsg~~dg~i~vw~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v 261 (448)
.|+++++ + +++|++|+.+|.|++|++... ....... ...|...+.++++ +|++..+|++|+.||.|
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~--~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLR-LRGHQKEGYGLSW--NPNLNGYLLSASDDHTI 206 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEE-EECCSSCCCCEEE--CTTSTTEEEEECTTSCE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEE-ecCCCCCeEEEEe--CCCCCCeEEEEeCCCeE
Confidence 5788888 3 579999999999999999862 1111122 2345566677777 88876689999999999
Q ss_pred EEEecCCce----E---EEEe-ecCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCC---ceeEeeecCCCcEEEEEEc
Q 013184 262 RDFDMERFQ----L---SKHF-SFPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTG---KAIMPLCGHLDFSFASAWH 329 (448)
Q Consensus 262 ~iwd~~~~~----~---~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~---~~~~~l~~h~~~v~~~~~~ 329 (448)
++|++.++. . ...+ .|...|.+++|+| ++.+|++++.++.|++||++++ +.+..+..|...|.+++|+
T Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 286 (430)
T 2xyi_A 207 CLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 286 (430)
T ss_dssp EEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEEC
T ss_pred EEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeC
Confidence 999998732 1 2334 3888999999999 7889999999999999999987 5777888999999999999
Q ss_pred CCCC-EEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCC-------------
Q 013184 330 PDGR-IFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGN-FMAMAEPADFVHVYDAKN------------- 394 (448)
Q Consensus 330 p~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~s~~~d~~v~vwd~~~------------- 394 (448)
|++. +|++|+.||.|++||+++...++..+..|...|.+++|+|+++ +|++++.|+.|+|||+..
T Consensus 287 p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 366 (430)
T 2xyi_A 287 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 366 (430)
T ss_dssp SSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHC
T ss_pred CCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccC
Confidence 9887 7999999999999999986788899999999999999999995 799999999999999987
Q ss_pred -CceeeeeecCcCceEEEEEccCCC-eEEEEEecCC
Q 013184 395 -GFEKEQEIDFFGEISGMTFSPDTE-ALFIGVWDRT 428 (448)
Q Consensus 395 -~~~~~~~~~~~~~v~~~~fspdg~-~L~~~~~D~~ 428 (448)
...+....+|...|.+++|+|+++ +|++++.|+.
T Consensus 367 ~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~ 402 (430)
T 2xyi_A 367 PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 402 (430)
T ss_dssp CTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred CcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC
Confidence 245566667889999999999999 7888888754
No 85
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=4.6e-28 Score=241.92 Aligned_cols=260 Identities=13% Similarity=0.132 Sum_probs=207.2
Q ss_pred eeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe----cCCEEEEEeCCCe
Q 013184 138 LVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV----RDNLLIAGGFQGE 212 (448)
Q Consensus 138 l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~----~~~~lvsg~~dg~ 212 (448)
+.+.+.. .++.+ .+++|++|++.++. .+..+.+|.. .|.++++ ++++|++|+.||.
T Consensus 168 l~~~~~~-~l~s~s~dg~i~vwd~~~~~--~~~~~~~h~~----------------~v~~l~~~~~~~~~~l~s~s~d~~ 228 (464)
T 3v7d_B 168 LKYAHGG-ILVSGSTDRTVRVWDIKKGC--CTHVFEGHNS----------------TVRCLDIVEYKNIKYIVTGSRDNT 228 (464)
T ss_dssp EEECSTT-EEEEEETTSCEEEEETTTTE--EEEEECCCSS----------------CEEEEEEEESSSCEEEEEEETTSC
T ss_pred EEEcCCC-EEEEEeCCCCEEEEECCCCc--EEEEECCCCC----------------ccEEEEEecCCCCCEEEEEcCCCc
Confidence 3344444 44444 57889999987654 4445556655 3777776 5689999999999
Q ss_pred EEEEEcCCCCcee--------------------EEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEE
Q 013184 213 LICKYLDQPGVSF--------------------CSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLS 272 (448)
Q Consensus 213 i~vw~~~~~~~~~--------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~ 272 (448)
|++|++....... .......+...+.++ ++++. ++++++.|+.|++||+.+++++
T Consensus 229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~-~l~~~~~d~~i~vwd~~~~~~~ 303 (464)
T 3v7d_B 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV----SGHGN-IVVSGSYDNTLIVWDVAQMKCL 303 (464)
T ss_dssp EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE----EEETT-EEEEEETTSCEEEEETTTTEEE
T ss_pred EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE----cCCCC-EEEEEeCCCeEEEEECCCCcEE
Confidence 9999998765321 122333444444444 34555 8999999999999999999998
Q ss_pred EEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 013184 273 KHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRN 351 (448)
Q Consensus 273 ~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~ 351 (448)
..+. |...|.+++|+|+++++++++.|+.|++||+++++.+..+.+|...|.+++|+ +.+|++++.||+|++||+++
T Consensus 304 ~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 304 YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC
Confidence 8887 89999999999999999999999999999999999999999999999999997 58999999999999999986
Q ss_pred CCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee-eecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 352 LSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ-EIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 352 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
....... .+...+..++|+|++++|++|+ ++.|++||+.+++.+.. ...|.+.|.+++|+ ++.|++++.+..
T Consensus 382 -~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g 454 (464)
T 3v7d_B 382 -YSRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDG 454 (464)
T ss_dssp -CCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETT
T ss_pred -Cceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCC
Confidence 4444333 3566788899999999999998 89999999999988865 56688999999997 556666665543
No 86
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=6.5e-28 Score=239.74 Aligned_cols=252 Identities=19% Similarity=0.284 Sum_probs=214.7
Q ss_pred CCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcCCC
Q 013184 143 SKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQP 221 (448)
Q Consensus 143 ~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~ 221 (448)
+++.++.+ .++.|++|+..+++ .+..+.+|.. .|.++++.+++|++|+.||.|++|++.+.
T Consensus 128 ~g~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~----------------~v~~~~~~~~~l~s~~~dg~i~vwd~~~~ 189 (445)
T 2ovr_B 128 CGNRIVSGSDDNTLKVWSAVTGK--CLRTLVGHTG----------------GVWSSQMRDNIIISGSTDRTLKVWNAETG 189 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTCC--EEEECCCCSS----------------CEEEEEEETTEEEEEETTSCEEEEETTTT
T ss_pred cCCEEEEEECCCcEEEEECCCCc--EEEEEcCCCC----------------CEEEEEecCCEEEEEeCCCeEEEEECCcC
Confidence 45555555 57789999987654 4455666665 38999999999999999999999999876
Q ss_pred CceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCC
Q 013184 222 GVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNP 300 (448)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~ 300 (448)
... .....|...+.++.+ + +. .+++|+.||.|++||+.+++.+..+. |..+|.++++ +++++++++.|+
T Consensus 190 ~~~---~~~~~h~~~v~~~~~--~--~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg 259 (445)
T 2ovr_B 190 ECI---HTLYGHTSTVRCMHL--H--EK-RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF 259 (445)
T ss_dssp EEE---EEECCCSSCEEEEEE--E--TT-EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS
T ss_pred cEE---EEECCCCCcEEEEEe--c--CC-EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC
Confidence 432 333456666677766 2 33 79999999999999999999888887 8999999999 688999999999
Q ss_pred cEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEE
Q 013184 301 EGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAM 380 (448)
Q Consensus 301 ~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s 380 (448)
.|++||+++++.+..+.+|...|.+++| ++.++++|+.|+.|++||+++ ++++..+.+|...+.++.++ +++|++
T Consensus 260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~~ 334 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTSGMELK--DNILVS 334 (445)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT-CCEEEEECCCCSCEEEEEEE--TTEEEE
T ss_pred EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC-CCEEEEEcCCcccEEEEEEe--CCEEEE
Confidence 9999999999999999999999999999 789999999999999999987 78889999999999888874 679999
Q ss_pred EeCCCeEEEEECCCCceeeeeec---CcCceEEEEEccCCCeEEEEEecCCc
Q 013184 381 AEPADFVHVYDAKNGFEKEQEID---FFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 381 ~~~d~~v~vwd~~~~~~~~~~~~---~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
|+.||.|++||+.+++.+..+.. |.+.|.+++|+ +++|++|+.|+.+
T Consensus 335 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v 384 (445)
T 2ovr_B 335 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTV 384 (445)
T ss_dssp EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEE
T ss_pred EeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeE
Confidence 99999999999999988887775 78899999995 6799999988653
No 87
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.4e-29 Score=247.94 Aligned_cols=227 Identities=9% Similarity=0.054 Sum_probs=168.2
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeE--EEeecCCCCceeeEEEEe-----CCCCCeeEEEEeCCCcEEEEecCCceEE
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFC--SRTTYDENAITNAVEIYN-----SPSGGIHFMASNNDCGVRDFDMERFQLS 272 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~--~~~~~~~~~~~~~v~~~~-----~~~~~~~l~s~s~dg~v~iwd~~~~~~~ 272 (448)
++++|++|+.|++|++|++........ .....+|...+++++|.. .+..+.+|++|+.|++|+|||+.++..+
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~ 179 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI 179 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee
Confidence 677899999999999999987764322 223457788889998842 1123459999999999999999876654
Q ss_pred -EEeecCCCeeEEEECCCC-CEEEEEecCCcEEEEECCCCceeEe-------------------------eecCCCcEEE
Q 013184 273 -KHFSFPWPVNHTSLSPDG-KLLVIVGDNPEGILVDSQTGKAIMP-------------------------LCGHLDFSFA 325 (448)
Q Consensus 273 -~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~-------------------------l~~h~~~v~~ 325 (448)
..+.|..+|.+++|+|++ .+|++++.|+.|++||+++++.... ..+|...+.+
T Consensus 180 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~ 259 (393)
T 4gq1_A 180 LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLAN 259 (393)
T ss_dssp EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSE
T ss_pred eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccccee
Confidence 445599999999999977 4799999999999999988764322 2357778888
Q ss_pred EEEc-CCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEE------------------EEcC--CCCEEEEEeCC
Q 013184 326 SAWH-PDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSI------------------RFTS--DGNFMAMAEPA 384 (448)
Q Consensus 326 ~~~~-p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l------------------~~sp--~g~~l~s~~~d 384 (448)
+.|+ |+|+.|++++.|+++++||+.. ++....+..|...+..+ .|+| ++.++++|+.|
T Consensus 260 v~~~~~dg~~l~s~s~d~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~D 338 (393)
T 4gq1_A 260 VRWIGSDGSGILAMCKSGAWLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQH 338 (393)
T ss_dssp EEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTT
T ss_pred eeeecCCCCEEEEEeCCCCEEEEECcc-CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCC
Confidence 9886 7999999999999999999976 44444454444433333 3333 34477788899
Q ss_pred CeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecC
Q 013184 385 DFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 385 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
|.|+|||+.++........|...|.+++|+|||++||+++.|+
T Consensus 339 g~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 339 GLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp TEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred CEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 9999999999998888888999999999999999999998764
No 88
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=4.1e-29 Score=240.46 Aligned_cols=232 Identities=14% Similarity=0.124 Sum_probs=195.2
Q ss_pred eeEEEEec------CCEEEEEeCCCeEEEEEcCCCCceeEEEe--ecCCCCceeeEEEEeCCCC---CeeEEEEeCCCcE
Q 013184 193 QVSTLAVR------DNLLIAGGFQGELICKYLDQPGVSFCSRT--TYDENAITNAVEIYNSPSG---GIHFMASNNDCGV 261 (448)
Q Consensus 193 ~i~~l~~~------~~~lvsg~~dg~i~vw~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~---~~~l~s~s~dg~v 261 (448)
.|.++++. ...+++++.+|.|++|++.+......... ...+...+.++++ +|++ +.+|++|+.||.|
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~~dg~i 97 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAW--TYDSNTSHPLLAVAGSRGII 97 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEE--EECTTTCCEEEEEEETTCEE
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEe--ccCCCCCCCEEEEecCCCEE
Confidence 48999995 45678888888999999987654322222 1224556677777 5552 3589999999999
Q ss_pred EEEecCCceEEEEee-cCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceeEee---ecCCCcEEEEEEcCCCCEEE
Q 013184 262 RDFDMERFQLSKHFS-FPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGKAIMPL---CGHLDFSFASAWHPDGRIFA 336 (448)
Q Consensus 262 ~iwd~~~~~~~~~~~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~l---~~h~~~v~~~~~~p~g~~l~ 336 (448)
++||+.+++.+..+. |..+|.+++|+| ++++|++++.|+.|++||+++++.+..+ .+|...|.+++|+|++++|+
T Consensus 98 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 177 (366)
T 3k26_A 98 RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 177 (366)
T ss_dssp EEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEE
T ss_pred EEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEE
Confidence 999999999988888 999999999999 9999999999999999999999998888 68999999999999999999
Q ss_pred EEeCCCcEEEEEccCCCcceE----------------------------EEccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 013184 337 TGNQDKTCRVWDVRNLSKSVA----------------------------VLKGNLGAIRSIRFTSDGNFMAMAEPADFVH 388 (448)
Q Consensus 337 s~~~d~~i~iwd~~~~~~~~~----------------------------~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~ 388 (448)
+++.|+.|++||+++ .+.+. ....|...|.+++|+ +++|++++.++.|+
T Consensus 178 ~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~ 254 (366)
T 3k26_A 178 SCGMDHSLKLWRINS-KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIV 254 (366)
T ss_dssp EEETTSCEEEEESCS-HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEE
T ss_pred EecCCCCEEEEECCC-CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEE
Confidence 999999999999975 33332 233489999999998 78999999999999
Q ss_pred EEECCCCce--------------eeeeecCcCceEEEEEccC--CCeEEEEEecCCc
Q 013184 389 VYDAKNGFE--------------KEQEIDFFGEISGMTFSPD--TEALFIGVWDRTY 429 (448)
Q Consensus 389 vwd~~~~~~--------------~~~~~~~~~~v~~~~fspd--g~~L~~~~~D~~~ 429 (448)
+||+.++.. +..+..|...|.+++|+|+ |++|++|+.|+.+
T Consensus 255 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i 311 (366)
T 3k26_A 255 CWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKL 311 (366)
T ss_dssp EEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCE
T ss_pred EEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcE
Confidence 999988754 5667778899999999999 9999999988754
No 89
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.2e-28 Score=239.95 Aligned_cols=223 Identities=13% Similarity=0.102 Sum_probs=182.1
Q ss_pred eeEEEEe--cCCEE-EEEeCCCeEEEEEcC--CCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecC
Q 013184 193 QVSTLAV--RDNLL-IAGGFQGELICKYLD--QPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDME 267 (448)
Q Consensus 193 ~i~~l~~--~~~~l-vsg~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~ 267 (448)
.|.++++ ++++| ++|+.||.|++|++. .......... ..+...+.++.+ +|++. +|++|+.+|.|++|++.
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~--sp~~~-~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR-FCFSKRPNAISI--AEDDT-TVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE-EECSSCEEEEEE--CTTSS-EEEEEETTSEEEEEETT
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec-ccCCCCceEEEE--cCCCC-EEEEEeCCCcEEEEecC
Confidence 5899988 77885 899999999999998 5443322211 234455566666 89886 88999999999999998
Q ss_pred CceEEE----Eee-cCCCeeEEEECCC---CCEEEEEecCCcEEEEECCCCceeEe-eecCCCcEEEEEEcCCCCEEEEE
Q 013184 268 RFQLSK----HFS-FPWPVNHTSLSPD---GKLLVIVGDNPEGILVDSQTGKAIMP-LCGHLDFSFASAWHPDGRIFATG 338 (448)
Q Consensus 268 ~~~~~~----~~~-~~~~v~~~~~sp~---~~~l~~~~~d~~i~i~d~~~~~~~~~-l~~h~~~v~~~~~~p~g~~l~s~ 338 (448)
+++... .+. |...|.+++|+|+ +++|++++.|+.|++||+.+++.+.. +.+|...|.+++|+ ++++|+++
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~ 258 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSA 258 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEE
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEE
Confidence 876543 444 8899999999999 99999999999999999999998877 56899999999999 99999999
Q ss_pred eCCCcEEEEEccCCCcceEEEcc-------------------------CCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEC
Q 013184 339 NQDKTCRVWDVRNLSKSVAVLKG-------------------------NLGAIRSIRFTSDGNFMAMAE-PADFVHVYDA 392 (448)
Q Consensus 339 ~~d~~i~iwd~~~~~~~~~~~~~-------------------------~~~~v~~l~~sp~g~~l~s~~-~d~~v~vwd~ 392 (448)
+.|++|++||+++ ++++..+.. ....|.+++|+|+|++|++++ .++.|+||++
T Consensus 259 ~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 259 GGDDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ESSSEEEEEETTT-CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred eCCCeEEEEECCC-CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 9999999999987 677766652 235689999999999999999 8999999999
Q ss_pred --CCC---ceeeeeecCcCceEEEEEccCCCeEEEE
Q 013184 393 --KNG---FEKEQEIDFFGEISGMTFSPDTEALFIG 423 (448)
Q Consensus 393 --~~~---~~~~~~~~~~~~v~~~~fspdg~~L~~~ 423 (448)
.++ ..+..+..+ +.|.+++|+|++ .+++.
T Consensus 338 ~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~ 371 (450)
T 2vdu_B 338 SEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTL 371 (450)
T ss_dssp CSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEE
T ss_pred ccCCCCceeeccEeccC-CceEEEEecCCc-EEEEE
Confidence 555 445556666 889999999964 44443
No 90
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.6e-29 Score=248.94 Aligned_cols=231 Identities=16% Similarity=0.197 Sum_probs=188.4
Q ss_pred eeEEEEe---cCCEEEEEeCCCeEEEEEcCC---CCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEec
Q 013184 193 QVSTLAV---RDNLLIAGGFQGELICKYLDQ---PGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM 266 (448)
Q Consensus 193 ~i~~l~~---~~~~lvsg~~dg~i~vw~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~ 266 (448)
.|+++++ ++++|++|+.||.|++|++.. ..... ......|...+.++.+ +|++. +|++++.||.|++||+
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~h~~~v~~~~~--~~~~~-~l~s~s~dg~i~vwd~ 140 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS-SSLTYDCSSTVTQITM--IPNFD-AFAVSSKDGQIIVLKV 140 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS-CSEEEECSSCEEEEEE--CTTSS-EEEEEETTSEEEEEEE
T ss_pred ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc-eeeeccCCCCEEEEEE--eCCCC-EEEEEeCCCEEEEEEe
Confidence 3888888 468999999999999999876 32111 1122246667777777 78766 8999999999999999
Q ss_pred C---CceEEEEe--------e-----cCCCeeEEE--ECCCCCEEEEEecCCcEEEEECCCCceeEeeec--CCCcEEEE
Q 013184 267 E---RFQLSKHF--------S-----FPWPVNHTS--LSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCG--HLDFSFAS 326 (448)
Q Consensus 267 ~---~~~~~~~~--------~-----~~~~v~~~~--~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~--h~~~v~~~ 326 (448)
+ +++....+ . +...+.++. ++|++.+|++++.|+.|++||+++++.+..+.+ |...|.++
T Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~ 220 (437)
T 3gre_A 141 NHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSI 220 (437)
T ss_dssp EEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEE
T ss_pred ccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEE
Confidence 5 44433322 2 345666766 568899999999999999999999999999998 89999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEc-cCCCCeEEEEEc----CCCCEEEEEeCCCeEEEEECCCCceeeee
Q 013184 327 AWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLK-GNLGAIRSIRFT----SDGNFMAMAEPADFVHVYDAKNGFEKEQE 401 (448)
Q Consensus 327 ~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~l~~s----p~g~~l~s~~~d~~v~vwd~~~~~~~~~~ 401 (448)
+|+|++++|++|+.||+|++||++. +.++..+. .|..+|.+++|+ |++++|++|+.|+.|+|||+.+++.+..+
T Consensus 221 ~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 299 (437)
T 3gre_A 221 CIDEECCVLILGTTRGIIDIWDIRF-NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAF 299 (437)
T ss_dssp EECTTSCEEEEEETTSCEEEEETTT-TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEE
Confidence 9999999999999999999999987 78888876 788899999665 46889999999999999999998877666
Q ss_pred ec--------------------------CcCceEEEEEccCCCeEEEEEecCCc
Q 013184 402 ID--------------------------FFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 402 ~~--------------------------~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
.. |...|.+++|+ ++++|++|+.|+.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i 352 (437)
T 3gre_A 300 INSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSI 352 (437)
T ss_dssp ESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEE
T ss_pred EcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeE
Confidence 53 45568889999 77999999988653
No 91
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4.4e-28 Score=237.74 Aligned_cols=227 Identities=18% Similarity=0.212 Sum_probs=195.5
Q ss_pred eeEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEE
Q 013184 193 QVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLS 272 (448)
Q Consensus 193 ~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~ 272 (448)
.+.++++.++.+++++.||.|++|++.+..... .....+...+.++.+ +|++. +|++|+.||.|++||+.+++.+
T Consensus 95 ~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~--~~~~~~~~~v~~v~~--s~~~~-~l~~~~~dg~i~iwd~~~~~~~ 169 (401)
T 4aez_A 95 YLNLLDWSNLNVVAVALERNVYVWNADSGSVSA--LAETDESTYVASVKW--SHDGS-FLSVGLGNGLVDIYDVESQTKL 169 (401)
T ss_dssp TCBCEEECTTSEEEEEETTEEEEEETTTCCEEE--EEECCTTCCEEEEEE--CTTSS-EEEEEETTSCEEEEETTTCCEE
T ss_pred eEEEEeecCCCEEEEECCCeEEEeeCCCCcEeE--eeecCCCCCEEEEEE--CCCCC-EEEEECCCCeEEEEECcCCeEE
Confidence 367788877889999999999999998876442 233346666777776 88876 8999999999999999999988
Q ss_pred EEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECC-CCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 013184 273 KHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQ-TGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVR 350 (448)
Q Consensus 273 ~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~-~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~ 350 (448)
..+. |...|.+++|+ ++.+++++.++.|++||++ .+..+..+.+|...|.+++|+|++++|++|+.|+.|++||++
T Consensus 170 ~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 170 RTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence 8887 89999999994 6799999999999999998 566788899999999999999999999999999999999998
Q ss_pred CCCcceEEEccCCCCeEEEEEcCCCC-EEEEEe--CCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEE--e
Q 013184 351 NLSKSVAVLKGNLGAIRSIRFTSDGN-FMAMAE--PADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGV--W 425 (448)
Q Consensus 351 ~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~--~ 425 (448)
+ ..++..+..|...|.+++|+|++. ++++++ .|+.|++||+.++.....+. +.+.|.+++|+|++++|++++ .
T Consensus 248 ~-~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~ 325 (401)
T 4aez_A 248 S-SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFP 325 (401)
T ss_dssp C-SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTT
T ss_pred C-CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecC
Confidence 7 788888999999999999999774 556654 69999999999988776664 678899999999999999965 5
Q ss_pred cCC
Q 013184 426 DRT 428 (448)
Q Consensus 426 D~~ 428 (448)
|+.
T Consensus 326 dg~ 328 (401)
T 4aez_A 326 DNN 328 (401)
T ss_dssp TCE
T ss_pred CCc
Confidence 654
No 92
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=9.4e-29 Score=263.88 Aligned_cols=230 Identities=16% Similarity=0.225 Sum_probs=203.5
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
.|.++++ ++.+|++|+.+|.|++|++.+.... .....|...+.++.| +|++. +|++++.||.|++|++.+++
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~---~~~~~~~~~v~~~~~--s~~~~-~l~~~~~dg~i~vw~~~~~~ 88 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEV---RSIQVTETPVRAGKF--IARKN-WIIVGSDDFRIRVFNYNTGE 88 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE---EEEECCSSCEEEEEE--EGGGT-EEEEEETTSEEEEEETTTCC
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceE---EEEecCCCcEEEEEE--eCCCC-EEEEEeCCCeEEEEECCCCc
Confidence 5888888 8899999999999999999876533 223355666777766 78876 89999999999999999999
Q ss_pred EEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCC-ceeEeeecCCCcEEEEEEcC-CCCEEEEEeCCCcEEEE
Q 013184 271 LSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTG-KAIMPLCGHLDFSFASAWHP-DGRIFATGNQDKTCRVW 347 (448)
Q Consensus 271 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~~~~~p-~g~~l~s~~~d~~i~iw 347 (448)
.+..+. |...|.+++|+|++++|++++.|+.|++||+.++ .....+.+|...|.+++|+| ++.+|++++.||+|++|
T Consensus 89 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vw 168 (814)
T 3mkq_A 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168 (814)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 888888 9999999999999999999999999999999987 66778889999999999999 89999999999999999
Q ss_pred EccCCCcceEEEccC-CCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEE
Q 013184 348 DVRNLSKSVAVLKGN-LGAIRSIRFTS--DGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 348 d~~~~~~~~~~~~~~-~~~v~~l~~sp--~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~ 424 (448)
|++. ......+..+ ...+.+++|+| +|.+|++++.++.|++||+.++..+..+..|.+.|.+++|+|+|++|++++
T Consensus 169 d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 169 SLGQ-STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247 (814)
T ss_dssp ETTC-SSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred ECCC-CcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 9976 5555555544 48899999999 999999999999999999999998888889999999999999999999999
Q ss_pred ecCCc
Q 013184 425 WDRTY 429 (448)
Q Consensus 425 ~D~~~ 429 (448)
.|+.+
T Consensus 248 ~dg~v 252 (814)
T 3mkq_A 248 EDGTL 252 (814)
T ss_dssp TTSCE
T ss_pred CCCeE
Confidence 88754
No 93
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.8e-29 Score=264.09 Aligned_cols=233 Identities=14% Similarity=0.175 Sum_probs=196.9
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCC--CCeeEEEEeCCCcEEEEecCC
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPS--GGIHFMASNNDCGVRDFDMER 268 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~s~dg~v~iwd~~~ 268 (448)
.|+++++ ++++|++|+.||.|++|++....... ......|...+.++.+ +|+ +. +|++|+.||.|++||+.+
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~-~~~l~~h~~~V~~l~~--s~~~~~~-~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKL-IDTLTGHEGPVWRVDW--AHPKFGT-ILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEE-EEEECCCSSCEEEEEE--CCTTSCS-EEEEEETTSCEEEEEEET
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCcc-ceeccCCcCceEEEEe--cCCCCCC-EEEEEeCCCeEEEEECCC
Confidence 4899988 78999999999999999998544332 3334456677777777 555 54 899999999999999998
Q ss_pred ce--EEEEee-cCCCeeEEEECCC--CCEEEEEecCCcEEEEECCCCc--eeEeeecCCCcEEEEEEcC-----------
Q 013184 269 FQ--LSKHFS-FPWPVNHTSLSPD--GKLLVIVGDNPEGILVDSQTGK--AIMPLCGHLDFSFASAWHP----------- 330 (448)
Q Consensus 269 ~~--~~~~~~-~~~~v~~~~~sp~--~~~l~~~~~d~~i~i~d~~~~~--~~~~l~~h~~~v~~~~~~p----------- 330 (448)
++ ....+. |..+|.+++|+|+ ++.+++++.|+.|++||++++. ....+.+|...|.+++|+|
T Consensus 87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~ 166 (753)
T 3jro_A 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------
T ss_pred CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccccc
Confidence 86 444444 8899999999998 9999999999999999998873 3456778999999999999
Q ss_pred --CCCEEEEEeCCCcEEEEEccCCC---cceEEEccCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEECCCCc-----e
Q 013184 331 --DGRIFATGNQDKTCRVWDVRNLS---KSVAVLKGNLGAIRSIRFTSD---GNFMAMAEPADFVHVYDAKNGF-----E 397 (448)
Q Consensus 331 --~g~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~l~~sp~---g~~l~s~~~d~~v~vwd~~~~~-----~ 397 (448)
++.+|++|+.||.|++||++... .++..+.+|.++|.+++|+|+ |++|++|+.||.|++||+.++. .
T Consensus 167 ~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 246 (753)
T 3jro_A 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT 246 (753)
T ss_dssp CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCC
T ss_pred CCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeE
Confidence 58999999999999999998733 455778899999999999999 9999999999999999998864 2
Q ss_pred eeeeecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 398 KEQEIDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 398 ~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
......|.+.|++++|+|+|++|++|+.|+.+
T Consensus 247 ~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I 278 (753)
T 3jro_A 247 LLKEEKFPDVLWRASWSLSGNVLALSGGDNKV 278 (753)
T ss_dssp BSSSSCCSSCCCCEEECTTTCCEEEECSSSCE
T ss_pred EeccCCCCCceEEEEEcCCCCEEEEEcCCCEE
Confidence 23334578899999999999999999999764
No 94
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=1.1e-27 Score=247.07 Aligned_cols=271 Identities=14% Similarity=0.106 Sum_probs=223.0
Q ss_pred cccceeeeCCCCeEEEecCCeEEEEecCCCc--eeEEEecCCCCCCCCCCCCCcccCCccee-eEEEEe----cCCEEEE
Q 013184 134 QLRNLVWSTSKHDVYLMSHFSIVHWSSLSSK--RTEVLDVSGHVAPCEKHPGNLLEGFTQTQ-VSTLAV----RDNLLIA 206 (448)
Q Consensus 134 q~r~l~~~~~~~~v~~~~~~~v~~w~~~~~~--~~~~~~~~gh~~p~~~~~~~~~~~~~~~~-i~~l~~----~~~~lvs 206 (448)
....+.+++....+++++++.|++|++.++. ...+..+.+|.. . |.++++ ++++|++
T Consensus 20 ~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~----------------~~v~~~~~sp~~~~~~l~s 83 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS----------------SVVTTVKFSPIKGSQYLCS 83 (615)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTT----------------SCEEEEEECSSTTCCEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCC----------------ceEEEEEECcCCCCCEEEE
Confidence 3455678888888999899999999987651 023334455543 4 778777 5689999
Q ss_pred EeCCCeEEEEEcCCC------CceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC----CcEEEEecCCceEEEEee
Q 013184 207 GGFQGELICKYLDQP------GVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND----CGVRDFDMERFQLSKHFS 276 (448)
Q Consensus 207 g~~dg~i~vw~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~ 276 (448)
|+.||.|++|++.+. .... ......+...+.++.+ +|++. +|++++.+ +.|++|| .++.+..+.
T Consensus 84 ~~~dg~v~vw~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~--s~~~~-~l~~~~~~~~~~~~v~~~d--~~~~~~~~~ 157 (615)
T 1pgu_A 84 GDESGKVIVWGWTFDKESNSVEVNV-KSEFQVLAGPISDISW--DFEGR-RLCVVGEGRDNFGVFISWD--SGNSLGEVS 157 (615)
T ss_dssp EETTSEEEEEEEEEEGGGTEEEEEE-EEEEECCSSCEEEEEE--CTTSS-EEEEEECCSSCSEEEEETT--TCCEEEECC
T ss_pred ecCCCEEEEEeCCCCcccccccccc-cchhhcccccEEEEEE--eCCCC-EEEEeccCCCCccEEEEEE--CCCcceeee
Confidence 999999999999654 2222 2233345566667766 89887 77788777 7899998 455666666
Q ss_pred -cCCCeeEEEECCCCC-EEEEEecCCcEEEEECCCCceeEeeecCCC---cEEEEEEcCC-CCEEEEEeCCCcEEEEEcc
Q 013184 277 -FPWPVNHTSLSPDGK-LLVIVGDNPEGILVDSQTGKAIMPLCGHLD---FSFASAWHPD-GRIFATGNQDKTCRVWDVR 350 (448)
Q Consensus 277 -~~~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~---~v~~~~~~p~-g~~l~s~~~d~~i~iwd~~ 350 (448)
|...|.+++|+|+++ ++++++.|+.|++||..+++.+..+.+|.. .|.+++|+|+ +++|++++.|+.|++||++
T Consensus 158 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 158 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 237 (615)
T ss_dssp SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence 899999999999998 899999999999999999999999999999 9999999999 9999999999999999998
Q ss_pred CCCcceEEE-c---cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecC----cCceEEEEEccCCCeEEE
Q 013184 351 NLSKSVAVL-K---GNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDF----FGEISGMTFSPDTEALFI 422 (448)
Q Consensus 351 ~~~~~~~~~-~---~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~----~~~v~~~~fspdg~~L~~ 422 (448)
+ ++.+..+ . .|..+|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+ ...+.++.|+ ++++|++
T Consensus 238 ~-~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 314 (615)
T 1pgu_A 238 S-GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIIS 314 (615)
T ss_dssp T-CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEE
T ss_pred C-CCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEE
Confidence 7 7778888 6 899999999999 9999999999999999999999888777765 3678888886 8999999
Q ss_pred EEecCCc
Q 013184 423 GVWDRTY 429 (448)
Q Consensus 423 ~~~D~~~ 429 (448)
++.|+.+
T Consensus 315 ~~~~g~i 321 (615)
T 1pgu_A 315 LSLDGTL 321 (615)
T ss_dssp EETTSCE
T ss_pred EECCCCE
Confidence 9988764
No 95
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=3.1e-28 Score=271.69 Aligned_cols=233 Identities=15% Similarity=0.235 Sum_probs=192.7
Q ss_pred ceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeE
Q 013184 137 NLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGEL 213 (448)
Q Consensus 137 ~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i 213 (448)
.+.+++.+..++.+ .++.|++|+..++. .+..+.+|.. .|.++++ ++++|++|+.||.|
T Consensus 620 ~~~~s~~~~~l~s~~~d~~i~vw~~~~~~--~~~~~~~h~~----------------~v~~~~~s~~~~~l~s~~~d~~v 681 (1249)
T 3sfz_A 620 HACFSQDGQRIASCGADKTLQVFKAETGE--KLLDIKAHED----------------EVLCCAFSSDDSYIATCSADKKV 681 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCC--EEEEECCCSS----------------CEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCC--EEEEeccCCC----------------CEEEEEEecCCCEEEEEeCCCeE
Confidence 34566777777665 46789999997754 4445566655 4889988 88999999999999
Q ss_pred EEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCC-CeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCC
Q 013184 214 ICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSG-GIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGK 291 (448)
Q Consensus 214 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~ 291 (448)
++|++.+.... .....|...+.++.+ +|++ ..++++|+.|+.|++||+.+++++..+. |..+|++++|+|+++
T Consensus 682 ~vwd~~~~~~~---~~~~~~~~~v~~~~~--~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~ 756 (1249)
T 3sfz_A 682 KIWDSATGKLV---HTYDEHSEQVNCCHF--TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE 756 (1249)
T ss_dssp EEEETTTCCEE---EEEECCSSCEEEEEE--CSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT
T ss_pred EEEECCCCceE---EEEcCCCCcEEEEEE--ecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCC
Confidence 99999887643 233356666777766 6642 3478999999999999999999888877 899999999999999
Q ss_pred EEEEEecCCcEEEEECCCCceeEee-------------------------------------------------------
Q 013184 292 LLVIVGDNPEGILVDSQTGKAIMPL------------------------------------------------------- 316 (448)
Q Consensus 292 ~l~~~~~d~~i~i~d~~~~~~~~~l------------------------------------------------------- 316 (448)
++++++.|+.|++||+.+++....+
T Consensus 757 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~ 836 (1249)
T 3sfz_A 757 LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH 836 (1249)
T ss_dssp EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEc
Confidence 9999999999999998776543322
Q ss_pred ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 013184 317 CGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAK 393 (448)
Q Consensus 317 ~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~ 393 (448)
.+|...+.+++|+|+++++++++.++.|++||+.+ +..+..+.+|.+.|.+++|+|+|++|++++.|+.|++|++.
T Consensus 837 ~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 837 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS-RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp CSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 16778899999999999999999999999999986 78888999999999999999999999999999999988853
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.7e-28 Score=234.45 Aligned_cols=231 Identities=10% Similarity=0.020 Sum_probs=195.7
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEec-CCc
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM-ERF 269 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~-~~~ 269 (448)
.|+++++ ++++|++|+.||.|++|++..............+...+.++.+ +|++..+|++++.||.|++|++ .++
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~~wd~~~~~ 90 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF--IDNTDLQIYVGTVQGEILKVDLIGSP 90 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEE--EESSSEEEEEEETTSCEEEECSSSSS
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEE--CCCCCcEEEEEcCCCeEEEEEeccCC
Confidence 5899988 7899999999999999999887733333333456667777777 6765427899999999999999 988
Q ss_pred eEEEEee--cCCCeeEEEECCCCCEEEEEecCCcEEEEECCC---------CceeEeeecCCCcEEEEEEcCCCCEEEEE
Q 013184 270 QLSKHFS--FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQT---------GKAIMPLCGHLDFSFASAWHPDGRIFATG 338 (448)
Q Consensus 270 ~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~---------~~~~~~l~~h~~~v~~~~~~p~g~~l~s~ 338 (448)
+...... |...|.+++|+| ++++++++.|+.|++||+++ ++++..+. |...+.+++|+|++ ++++
T Consensus 91 ~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~ 166 (342)
T 1yfq_A 91 SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVG 166 (342)
T ss_dssp SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEE
T ss_pred ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEE
Confidence 8766666 899999999999 99999999999999999988 77777776 88999999999987 9999
Q ss_pred eCCCcEEEEEccC-CCc-ceEEEccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC------ceeeeeecCcC---
Q 013184 339 NQDKTCRVWDVRN-LSK-SVAVLKGNLGAIRSIRFTS-DGNFMAMAEPADFVHVYDAKNG------FEKEQEIDFFG--- 406 (448)
Q Consensus 339 ~~d~~i~iwd~~~-~~~-~~~~~~~~~~~v~~l~~sp-~g~~l~s~~~d~~v~vwd~~~~------~~~~~~~~~~~--- 406 (448)
+.++.|++||++. ... .......|...|.+++|+| ++++|++++.+|.|++|++... .....+..|..
T Consensus 167 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (342)
T 1yfq_A 167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246 (342)
T ss_dssp ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTT
T ss_pred eCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccc
Confidence 9999999999986 433 3345556888999999999 9999999999999999999876 66666777754
Q ss_pred ------ceEEEEEccCCCeEEEEEecCCc
Q 013184 407 ------EISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 407 ------~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
.|.+++|+|++++|++++.|+.+
T Consensus 247 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 275 (342)
T 1yfq_A 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGII 275 (342)
T ss_dssp CCSSCCCEEEEEECTTTCCEEEEETTSCE
T ss_pred ccccceeEEEEEEcCCCCEEEEecCCceE
Confidence 99999999999999999988653
No 97
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.1e-29 Score=239.88 Aligned_cols=222 Identities=7% Similarity=0.012 Sum_probs=175.2
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecC---------Cce
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDME---------RFQ 270 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~---------~~~ 270 (448)
++++|++|+.||.|++|++.+........ ...+..+.+ +|. +++++.|++|++|+.. +++
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~--~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~ 115 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGE--HPA----IISRGPCNRLLLLYPGNQITILDSKTNK 115 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCC--CCS----EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeee--CCc----eEEecCCCeEEEEEccCceEEeecCCcc
Confidence 78899999999999999998876543322 122333333 444 8999999999999665 455
Q ss_pred EEEEee--cCCCeeEEEECC--CCCEEEEEecCCcEEEEECCCCceeEeeec-CCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 013184 271 LSKHFS--FPWPVNHTSLSP--DGKLLVIVGDNPEGILVDSQTGKAIMPLCG-HLDFSFASAWHPDGRIFATGNQDKTCR 345 (448)
Q Consensus 271 ~~~~~~--~~~~v~~~~~sp--~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~-h~~~v~~~~~~p~g~~l~s~~~d~~i~ 345 (448)
.+..+. |..+|.+++|+| +++++++++.|+.|++||+++++.+..... |...+.+++|+|+|.+|++|+.|+.|+
T Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 454444 668899999999 999999999999999999999998776644 556899999999999999999999999
Q ss_pred EEEccCCCcce-EEEcc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeec---CcCceE--EEEEccCCC
Q 013184 346 VWDVRNLSKSV-AVLKG-NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEID---FFGEIS--GMTFSPDTE 418 (448)
Q Consensus 346 iwd~~~~~~~~-~~~~~-~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~---~~~~v~--~~~fspdg~ 418 (448)
+||+++ +..+ ..+.. |.++|++++|+|+|.+|++++ ++.|+|||++++.....+.. |...+. +++|+|+|+
T Consensus 196 iwd~~~-~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 273 (343)
T 3lrv_A 196 VYNLSS-PDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK 273 (343)
T ss_dssp EEESSC-TTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS
T ss_pred EEECCC-CCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCC
Confidence 999987 5555 78888 999999999999999999999 55999999998876544433 333444 599999999
Q ss_pred eEEEEEe-cCCcceEEEE
Q 013184 419 ALFIGVW-DRTYGSLLQY 435 (448)
Q Consensus 419 ~L~~~~~-D~~~~~ll~~ 435 (448)
+|++++. |+. -.++.+
T Consensus 274 ~l~~~s~~d~~-i~v~~~ 290 (343)
T 3lrv_A 274 NMIAYSNESNS-LTIYKF 290 (343)
T ss_dssp EEEEEETTTTE-EEEEEE
T ss_pred EEEEecCCCCc-EEEEEE
Confidence 9999988 654 344444
No 98
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=4.5e-28 Score=270.39 Aligned_cols=231 Identities=16% Similarity=0.190 Sum_probs=204.3
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
.|+++++ ++++|++|+.||.|++|++.+.... .....|...+.++.+ +|++. ++++++.|+.|++||+.+++
T Consensus 617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~---~~~~~h~~~v~~~~~--s~~~~-~l~s~~~d~~v~vwd~~~~~ 690 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLCCAF--SSDDS-YIATCSADKKVKIWDSATGK 690 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE---EEECCCSSCEEEEEE--CTTSS-EEEEEETTSEEEEEETTTCC
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEE---EEeccCCCCEEEEEE--ecCCC-EEEEEeCCCeEEEEECCCCc
Confidence 4888888 8899999999999999999887643 223356666677766 88886 89999999999999999999
Q ss_pred EEEEee-cCCCeeEEEECC--CCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 013184 271 LSKHFS-FPWPVNHTSLSP--DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVW 347 (448)
Q Consensus 271 ~~~~~~-~~~~v~~~~~sp--~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iw 347 (448)
.+..+. |...|.+++|+| ++.++++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||+|++|
T Consensus 691 ~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vw 770 (1249)
T 3sfz_A 691 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770 (1249)
T ss_dssp EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEE
T ss_pred eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEE
Confidence 998887 999999999999 56689999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcceEE-------------------------------------------------------EccCCCCeEEEEEc
Q 013184 348 DVRNLSKSVAV-------------------------------------------------------LKGNLGAIRSIRFT 372 (448)
Q Consensus 348 d~~~~~~~~~~-------------------------------------------------------~~~~~~~v~~l~~s 372 (448)
|+++ ...... ..+|...|.+++|+
T Consensus 771 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s 849 (1249)
T 3sfz_A 771 DVRS-ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 849 (1249)
T ss_dssp EGGG-TEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC
T ss_pred eCCC-CcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc
Confidence 9865 222111 12677889999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 373 SDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 373 p~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
|+|+++++++.++.|++||+.++.....+.+|.+.|.+++|+|+|++|++++.|+++.
T Consensus 850 p~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~ 907 (1249)
T 3sfz_A 850 PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIR 907 (1249)
T ss_dssp SSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEE
Confidence 9999999999999999999999999999999999999999999999999999997643
No 99
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.7e-28 Score=234.15 Aligned_cols=240 Identities=17% Similarity=0.215 Sum_probs=193.3
Q ss_pred cceeeeCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--c--CCEEEEEeCC
Q 013184 136 RNLVWSTSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--R--DNLLIAGGFQ 210 (448)
Q Consensus 136 r~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~--~~~lvsg~~d 210 (448)
..+.+.+....+++++ ++.|++|++.......+..+.+|..+ |.++++ + +++|++|+.|
T Consensus 15 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~----------------v~~~~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 15 HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGP----------------VWRVDWAHPKFGTILASCSYD 78 (379)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC----------------EEEEEECCGGGCSEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCc----------------EEEEEeCCCCCCCEEEEeccC
Confidence 3455667777777764 77899999876566666777777664 899998 3 8999999999
Q ss_pred CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCC--CCeeEEEEeCCCcEEEEecCCce---EEEEeecCCCeeEEE
Q 013184 211 GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPS--GGIHFMASNNDCGVRDFDMERFQ---LSKHFSFPWPVNHTS 285 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~v~~~~ 285 (448)
|.|++|++....... ......+...+.++.+ +|+ +. +|++++.|+.|++||+.++. ......|...|.+++
T Consensus 79 g~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~--~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~ 154 (379)
T 3jrp_A 79 GKVLIWKEENGRWSQ-IAVHAVHSASVNSVQW--APHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 154 (379)
T ss_dssp SCEEEEEEETTEEEE-EEEECCCSSCEEEEEE--CCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE
T ss_pred CEEEEEEcCCCceeE-eeeecCCCcceEEEEe--CCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE
Confidence 999999998765322 2333445666677766 777 55 89999999999999998763 222234889999999
Q ss_pred ECC-------------CCCEEEEEecCCcEEEEECCCCc----eeEeeecCCCcEEEEEEcCC---CCEEEEEeCCCcEE
Q 013184 286 LSP-------------DGKLLVIVGDNPEGILVDSQTGK----AIMPLCGHLDFSFASAWHPD---GRIFATGNQDKTCR 345 (448)
Q Consensus 286 ~sp-------------~~~~l~~~~~d~~i~i~d~~~~~----~~~~l~~h~~~v~~~~~~p~---g~~l~s~~~d~~i~ 345 (448)
|+| ++.++++++.|+.|++||+++++ .+..+.+|...|.+++|+|+ +++|++++.||.|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~ 234 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 234 (379)
T ss_dssp ECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred EcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEE
Confidence 999 69999999999999999998765 44677889999999999999 89999999999999
Q ss_pred EEEccCCCcc--eEE--EccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 013184 346 VWDVRNLSKS--VAV--LKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG 395 (448)
Q Consensus 346 iwd~~~~~~~--~~~--~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~ 395 (448)
+||++..... ... ...|...|.+++|+|+|++|++++.||.|++|++..+
T Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred EEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 9999863222 122 2337889999999999999999999999999998754
No 100
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=7.2e-28 Score=229.33 Aligned_cols=247 Identities=15% Similarity=0.149 Sum_probs=196.9
Q ss_pred cceeeeCCCCeEEEec-CCeEEEEecCCCce--eEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe----cCCEEEEEe
Q 013184 136 RNLVWSTSKHDVYLMS-HFSIVHWSSLSSKR--TEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV----RDNLLIAGG 208 (448)
Q Consensus 136 r~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~--~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~----~~~~lvsg~ 208 (448)
..+.+.+.+..++.++ ++.|++|+..++.. ..+..+.+|.. .|.++++ ++++|++|+
T Consensus 15 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~----------------~v~~~~~~~~~d~~~l~s~~ 78 (351)
T 3f3f_A 15 HDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDS----------------SIVAIDWASPEYGRIIASAS 78 (351)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSS----------------CEEEEEECCGGGCSEEEEEE
T ss_pred eEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCC----------------cEEEEEEcCCCCCCEEEEEc
Confidence 3455667777677664 67899999876433 34445556655 4899998 389999999
Q ss_pred CCCeEEEEEcCCCCce------eEEEeecCCCCceeeEEEEeCCC--CCeeEEEEeCCCcEEEEecCCceEEEEe-----
Q 013184 209 FQGELICKYLDQPGVS------FCSRTTYDENAITNAVEIYNSPS--GGIHFMASNNDCGVRDFDMERFQLSKHF----- 275 (448)
Q Consensus 209 ~dg~i~vw~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~----- 275 (448)
.||.|++|++...... ........+...+.++.+ +|+ +. +|++++.||.|++||+.+++.+..+
T Consensus 79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 155 (351)
T 3f3f_A 79 YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKF--APAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSE 155 (351)
T ss_dssp TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEE--CCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEE
T ss_pred CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEE--cCCCCCc-EEEEecCCCcEEEecCCChHHhcccccccc
Confidence 9999999999875421 223334456666677766 777 65 8999999999999999876533222
Q ss_pred ---------ecCCCeeEEEECCC---CCEEEEEecCCcEEEEECCCCce--eEeeecCCCcEEEEEEcCCC----CEEEE
Q 013184 276 ---------SFPWPVNHTSLSPD---GKLLVIVGDNPEGILVDSQTGKA--IMPLCGHLDFSFASAWHPDG----RIFAT 337 (448)
Q Consensus 276 ---------~~~~~v~~~~~sp~---~~~l~~~~~d~~i~i~d~~~~~~--~~~l~~h~~~v~~~~~~p~g----~~l~s 337 (448)
.+...+.+++|+|+ +..+++++.++.+.+|+...++. +..+.+|...|.+++|+|++ ++|++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 156 MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred ccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence 25678999999997 99999999999998888887765 67788999999999999998 89999
Q ss_pred EeCCCcEEEEEccCCC---------------------------------------------cceEEEccCCCCeEEEEEc
Q 013184 338 GNQDKTCRVWDVRNLS---------------------------------------------KSVAVLKGNLGAIRSIRFT 372 (448)
Q Consensus 338 ~~~d~~i~iwd~~~~~---------------------------------------------~~~~~~~~~~~~v~~l~~s 372 (448)
|+.||.|++||++... ..+..+.+|...|++++|+
T Consensus 236 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 315 (351)
T 3f3f_A 236 GCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN 315 (351)
T ss_dssp EETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEEC
T ss_pred EcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEc
Confidence 9999999999997621 5667788899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeee
Q 013184 373 SDGNFMAMAEPADFVHVYDAKNGFEKEQE 401 (448)
Q Consensus 373 p~g~~l~s~~~d~~v~vwd~~~~~~~~~~ 401 (448)
|+|++|++|+.||.|+||++.++.....+
T Consensus 316 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 316 LTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp SSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred CCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 99999999999999999999987655443
No 101
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-27 Score=225.12 Aligned_cols=221 Identities=14% Similarity=0.149 Sum_probs=190.2
Q ss_pred eeEEEEe-cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc--
Q 013184 193 QVSTLAV-RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF-- 269 (448)
Q Consensus 193 ~i~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~-- 269 (448)
.|.++++ ++++|++|+.||.|++|++...... .....+...+.++.+ +|++. ++++++.|+.|++|++...
T Consensus 20 ~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~---~~~~~~~~~v~~~~~--~~~~~-~l~~~~~dg~i~~~~~~~~~~ 93 (313)
T 3odt_A 20 DVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLG---TVVYTGQGFLNSVCY--DSEKE-LLLFGGKDTMINGVPLFATSG 93 (313)
T ss_dssp CEEEEEEEETTEEEEEETTSEEEEEEESSSEEE---EEEEECSSCEEEEEE--ETTTT-EEEEEETTSCEEEEETTCCTT
T ss_pred CcEEEEecCCCEEEEEEcCCcEEEEECCCCEEE---EEeecCCccEEEEEE--CCCCC-EEEEecCCCeEEEEEeeecCC
Confidence 4888888 8899999999999999999665432 233345666677766 78876 8999999999999998653
Q ss_pred -eEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcC-CCCEEEEEeCCCcEEE
Q 013184 270 -QLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHP-DGRIFATGNQDKTCRV 346 (448)
Q Consensus 270 -~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p-~g~~l~s~~~d~~i~i 346 (448)
+....+. |...|.+++| +++++++++.++.|++|| .++.+..+..|...+.+++|+| ++.++++++.|+.|++
T Consensus 94 ~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 169 (313)
T 3odt_A 94 EDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL 169 (313)
T ss_dssp SCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEE
Confidence 4455555 8899999999 578999999999999999 7778888999999999999998 9999999999999999
Q ss_pred EEccCCCcceEEEcc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 347 WDVRNLSKSVAVLKG-NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 347 wd~~~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
||. ...+..+.. |...|.+++|+|++. |++++.++.|++||+.+++.+..+..|.+.|.+++|+|++ .|++++.
T Consensus 170 ~d~---~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~ 244 (313)
T 3odt_A 170 WQN---DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGE 244 (313)
T ss_dssp EET---TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEET
T ss_pred Eec---CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEec
Confidence 994 566777777 889999999999998 8999999999999999999999999999999999999999 5888888
Q ss_pred cCC
Q 013184 426 DRT 428 (448)
Q Consensus 426 D~~ 428 (448)
|+.
T Consensus 245 dg~ 247 (313)
T 3odt_A 245 DRT 247 (313)
T ss_dssp TSE
T ss_pred CCE
Confidence 754
No 102
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=3.1e-28 Score=238.76 Aligned_cols=223 Identities=20% Similarity=0.252 Sum_probs=185.5
Q ss_pred EEEEeCCCeEEEEEcCCCCce-eEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc-------eEEEEe
Q 013184 204 LIAGGFQGELICKYLDQPGVS-FCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF-------QLSKHF 275 (448)
Q Consensus 204 lvsg~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~-------~~~~~~ 275 (448)
+++|+.+|.|++|++...+.. ........|...+.++++ +|.+..+|++|+.||.|++|++.++ +.+..+
T Consensus 50 ~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~--~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~ 127 (402)
T 2aq5_A 50 ICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAW--CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL 127 (402)
T ss_dssp EBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEE--CTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE
T ss_pred EEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEe--CCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe
Confidence 345789999999999765421 112233456777777776 8833449999999999999999887 455666
Q ss_pred e-cCCCeeEEEECCCC-CEEEEEecCCcEEEEECCCCceeEee--ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 013184 276 S-FPWPVNHTSLSPDG-KLLVIVGDNPEGILVDSQTGKAIMPL--CGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRN 351 (448)
Q Consensus 276 ~-~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~l--~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~ 351 (448)
. |...|.+++|+|++ .+|++++.|+.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+++
T Consensus 128 ~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 207 (402)
T 2aq5_A 128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK 207 (402)
T ss_dssp ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT
T ss_pred cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC
Confidence 6 89999999999998 69999999999999999999999999 78999999999999999999999999999999987
Q ss_pred CCcceEEE-ccCCCC-eEEEEEcCCCCEEEEE---eCCCeEEEEECCCCceee-e-eecCcCceEEEEEccCCCeEEEEE
Q 013184 352 LSKSVAVL-KGNLGA-IRSIRFTSDGNFMAMA---EPADFVHVYDAKNGFEKE-Q-EIDFFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 352 ~~~~~~~~-~~~~~~-v~~l~~sp~g~~l~s~---~~d~~v~vwd~~~~~~~~-~-~~~~~~~v~~~~fspdg~~L~~~~ 424 (448)
+..+..+ .+|.+. +.++.|+|+|++|++| +.++.|++||+.++.... . ...+...|.+++|+|++++|++++
T Consensus 208 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g 286 (402)
T 2aq5_A 208 -GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCG 286 (402)
T ss_dssp -TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEE
T ss_pred -CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEE
Confidence 7777777 788776 8999999999999999 789999999998876522 2 235778899999999999998665
Q ss_pred -ecCCc
Q 013184 425 -WDRTY 429 (448)
Q Consensus 425 -~D~~~ 429 (448)
.|+.+
T Consensus 287 ~~dg~i 292 (402)
T 2aq5_A 287 KGDSSI 292 (402)
T ss_dssp TTCSCE
T ss_pred cCCCeE
Confidence 56543
No 103
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=1.6e-28 Score=235.65 Aligned_cols=232 Identities=9% Similarity=0.093 Sum_probs=188.4
Q ss_pred eeEEEEe--cCC-EEEEEeC---CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCC--CeeEEEEeCCCcEEEE
Q 013184 193 QVSTLAV--RDN-LLIAGGF---QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSG--GIHFMASNNDCGVRDF 264 (448)
Q Consensus 193 ~i~~l~~--~~~-~lvsg~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~s~dg~v~iw 264 (448)
.|.++++ ++. ++++|+. ||.|++|++.+....... ...+...+.++.+ +|++ +.+|++++.||.|++|
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~--~~~~~~~v~~~~~--~~~~~~~~~l~~~~~dg~i~iw 95 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR--EIEKAKPIKCGTF--GATSLQQRYLATGDFGGNLHIW 95 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE--EEEESSCEEEEEC--TTCCTTTCCEEEEETTSCEEEE
T ss_pred ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee--eecccCcEEEEEE--cCCCCCCceEEEecCCCeEEEE
Confidence 5899999 454 5566666 999999999877643222 2244556666665 8873 3589999999999999
Q ss_pred ecCCce-EEEEee-cCCCeeEEE------ECCCCCEEEEEecCCcEEEEECCCCc-eeEeeecCCC----cEEEEE----
Q 013184 265 DMERFQ-LSKHFS-FPWPVNHTS------LSPDGKLLVIVGDNPEGILVDSQTGK-AIMPLCGHLD----FSFASA---- 327 (448)
Q Consensus 265 d~~~~~-~~~~~~-~~~~v~~~~------~sp~~~~l~~~~~d~~i~i~d~~~~~-~~~~l~~h~~----~v~~~~---- 327 (448)
|+.+++ .+..+. |...|.++. |+|++++|++++.|+.|++||+.+++ .+..+..|.. .+.+++
T Consensus 96 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (357)
T 3i2n_A 96 NLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA 175 (357)
T ss_dssp CTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC
T ss_pred eCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec
Confidence 999887 666666 899999995 57899999999999999999999987 6777766554 788888
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCceeeeee--
Q 013184 328 WHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTS---DGNFMAMAEPADFVHVYDAKNGFEKEQEI-- 402 (448)
Q Consensus 328 ~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp---~g~~l~s~~~d~~v~vwd~~~~~~~~~~~-- 402 (448)
|+|++++|++++.|+.|++||+++ .+. .....|...|.+++|+| ++.+|++++.++.|++||+.++.....+.
T Consensus 176 ~~~~~~~l~~~~~d~~i~i~d~~~-~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 253 (357)
T 3i2n_A 176 YNQEERVVCAGYDNGDIKLFDLRN-MAL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASV 253 (357)
T ss_dssp CC-CCCEEEEEETTSEEEEEETTT-TEE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEE
T ss_pred cCCCCCEEEEEccCCeEEEEECcc-Cce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeee
Confidence 789999999999999999999986 444 44567889999999999 99999999999999999998876554444
Q ss_pred ---cCcCceEEEEEccCCC-eEEEEEecCCcc
Q 013184 403 ---DFFGEISGMTFSPDTE-ALFIGVWDRTYG 430 (448)
Q Consensus 403 ---~~~~~v~~~~fspdg~-~L~~~~~D~~~~ 430 (448)
.|...|.+++|+|+++ +|++++.|+.+.
T Consensus 254 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 285 (357)
T 3i2n_A 254 SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLH 285 (357)
T ss_dssp EEECCSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEE
Confidence 7999999999999998 899999887543
No 104
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-27 Score=238.20 Aligned_cols=188 Identities=15% Similarity=0.120 Sum_probs=163.5
Q ss_pred ceeeEEEEeCCCCCeeEEEEeCCCcEEEEecC--CceEEEEe---ecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCC
Q 013184 236 ITNAVEIYNSPSGGIHFMASNNDCGVRDFDME--RFQLSKHF---SFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTG 310 (448)
Q Consensus 236 ~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~--~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~ 310 (448)
.+.++.+ +|++..++++++.||.|++|++. +++.+..+ .+...|.+++|+|++++|++++.++.+++|++.++
T Consensus 104 ~v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~ 181 (450)
T 2vdu_B 104 YIRNLRL--TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSI 181 (450)
T ss_dssp CEEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC
T ss_pred ceEEEEE--cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCc
Confidence 3455555 99998556899999999999998 77777766 46789999999999999999999999999999888
Q ss_pred ceeE----eeecCCCcEEEEEEcCC---CCEEEEEeCCCcEEEEEccCCCcceEE-EccCCCCeEEEEEcCCCCEEEEEe
Q 013184 311 KAIM----PLCGHLDFSFASAWHPD---GRIFATGNQDKTCRVWDVRNLSKSVAV-LKGNLGAIRSIRFTSDGNFMAMAE 382 (448)
Q Consensus 311 ~~~~----~l~~h~~~v~~~~~~p~---g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~s~~ 382 (448)
+... .+.+|...|.+++|+|+ +++|++|+.|++|++||+++ +.++.. +.+|.+.|.+++|+ +|++|++++
T Consensus 182 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~ 259 (450)
T 2vdu_B 182 PEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-CFIVDKWLFGHKHFVSSICCG-KDYLLLSAG 259 (450)
T ss_dssp CCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-TTCEEEECCCCSSCEEEEEEC-STTEEEEEE
T ss_pred ccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-CceeeeeecCCCCceEEEEEC-CCCEEEEEe
Confidence 7554 77889999999999999 99999999999999999987 566665 66899999999999 999999999
Q ss_pred CCCeEEEEECCCCceeeeeec-------------------------CcCceEEEEEccCCCeEEEEE-ecC
Q 013184 383 PADFVHVYDAKNGFEKEQEID-------------------------FFGEISGMTFSPDTEALFIGV-WDR 427 (448)
Q Consensus 383 ~d~~v~vwd~~~~~~~~~~~~-------------------------~~~~v~~~~fspdg~~L~~~~-~D~ 427 (448)
.|+.|+|||+.+++.+..+.. ....|.+++|+|++++|++++ .|+
T Consensus 260 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~ 330 (450)
T 2vdu_B 260 GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATK 330 (450)
T ss_dssp SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCS
T ss_pred CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCC
Confidence 999999999999987766652 234689999999999999998 553
No 105
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.8e-27 Score=236.02 Aligned_cols=221 Identities=14% Similarity=0.212 Sum_probs=195.2
Q ss_pred eeEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEE
Q 013184 193 QVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLS 272 (448)
Q Consensus 193 ~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~ 272 (448)
.|.++++++++|++|+.||.|++|++.+.... .....|...+.++.+ ++. +|++|+.||.|++||+.+++.+
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~l~~----~~~-~l~sg~~dg~i~vwd~~~~~~~ 206 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLECK---RILTGHTGSVLCLQY----DER-VIITGSSDSTVRVWDVNTGEML 206 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSCCEE---EEECCCSSCEEEEEC----CSS-EEEEEETTSCEEEEESSSCCEE
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCCeEE---EEEcCCCCcEEEEEE----CCC-EEEEEcCCCeEEEEECCCCcEE
Confidence 58999999999999999999999999876543 233455666666654 444 8999999999999999999998
Q ss_pred EEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCcee---EeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 013184 273 KHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAI---MPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWD 348 (448)
Q Consensus 273 ~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~---~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd 348 (448)
..+. |...|.+++|+ +..+++++.|+.|++||+.+++.+ ..+.+|...|.+++| ++++|++|+.||.|++||
T Consensus 207 ~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd 282 (435)
T 1p22_A 207 NTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWN 282 (435)
T ss_dssp EEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEE
Confidence 8887 88999999997 459999999999999999988765 667889999999999 789999999999999999
Q ss_pred ccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 349 VRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 349 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
+++ .+++..+.+|...|.++.|+ +++|++|+.||.|++||+.++..+..+..|...|.+++| ++++|++|+.|+.
T Consensus 283 ~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~ 357 (435)
T 1p22_A 283 TST-CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK 357 (435)
T ss_dssp TTT-CCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred CCc-CcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc
Confidence 987 78899999999999999994 689999999999999999999999999999999999999 7889999999976
Q ss_pred cc
Q 013184 429 YG 430 (448)
Q Consensus 429 ~~ 430 (448)
+.
T Consensus 358 i~ 359 (435)
T 1p22_A 358 IK 359 (435)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 106
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=2e-27 Score=229.32 Aligned_cols=264 Identities=13% Similarity=0.077 Sum_probs=193.5
Q ss_pred cceeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEE-EEEeCCCeEE
Q 013184 136 RNLVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLL-IAGGFQGELI 214 (448)
Q Consensus 136 r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~l-vsg~~dg~i~ 214 (448)
+.+.+.+++..+..+++..+++|+..+..........+ ..+.++.+.++.+ ++|+.++.|+
T Consensus 23 ~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~d~~v~ 84 (355)
T 3vu4_A 23 TDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRH------------------LSKVRMLHRTNYVAFVTGVKEVVH 84 (355)
T ss_dssp CEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECSC------------------CCEEEECTTSSEEEEECSSTTEEE
T ss_pred EEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecCC------------------eEEEEEcCCCCEEEEEECCccEEE
Confidence 44556777777777788889999976543332222211 1244555566666 6788899999
Q ss_pred EEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc-eEEEEeecCCCeeEEEECCCCCEE
Q 013184 215 CKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF-QLSKHFSFPWPVNHTSLSPDGKLL 293 (448)
Q Consensus 215 vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~v~~~~~sp~~~~l 293 (448)
+|++.+..... .+. +...+.++.+ +++ .++++ .++.|++||+.++ +.+..+.. +...+++++ ..+
T Consensus 85 iWd~~~~~~~~--~~~--~~~~v~~v~~--~~~---~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~l 150 (355)
T 3vu4_A 85 IWDDVKKQDVS--RIK--VDAPVKDLFL--SRE---FIVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLL 150 (355)
T ss_dssp EEETTTTEEEE--EEE--CSSCEEEEEE--CSS---EEEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEE
T ss_pred EEECCCCcEEE--EEE--CCCceEEEEE--cCC---EEEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cEE
Confidence 99998765432 222 3345566655 544 34444 3789999999987 65555544 455666777 666
Q ss_pred EE--EecCCcEEEEECCCCc----------------eeEeeecCCCcEEEEEEcCCCCEEEEEeCCCc-EEEEEccCCCc
Q 013184 294 VI--VGDNPEGILVDSQTGK----------------AIMPLCGHLDFSFASAWHPDGRIFATGNQDKT-CRVWDVRNLSK 354 (448)
Q Consensus 294 ~~--~~~d~~i~i~d~~~~~----------------~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~-i~iwd~~~~~~ 354 (448)
++ ++.+|.|++||+.+++ .+..+.+|...|.+++|+|+|++|++|+.|++ |++||+++ ++
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~-~~ 229 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED-GV 229 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT-CC
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC-Cc
Confidence 66 5789999999999876 26788999999999999999999999999998 99999987 78
Q ss_pred ceEEEc-c-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee----------------------e-cCcCceE
Q 013184 355 SVAVLK-G-NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQE----------------------I-DFFGEIS 409 (448)
Q Consensus 355 ~~~~~~-~-~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~----------------------~-~~~~~v~ 409 (448)
++..+. + |.+.|.+++|+|+|++|++++.|+.|+|||+..+...... . .......
T Consensus 230 ~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
T 3vu4_A 230 LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGC 309 (355)
T ss_dssp EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCC
T ss_pred EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCce
Confidence 888887 5 9999999999999999999999999999999765321100 0 0112246
Q ss_pred EEEEccCCCeEEEEEecCCcceE
Q 013184 410 GMTFSPDTEALFIGVWDRTYGSL 432 (448)
Q Consensus 410 ~~~fspdg~~L~~~~~D~~~~~l 432 (448)
.++|+|+|+.|++++.|+.+...
T Consensus 310 ~~a~~~d~~~l~~~~~dg~~~~~ 332 (355)
T 3vu4_A 310 KIAWISESSLVVVWPHTRMIETF 332 (355)
T ss_dssp EEEESSSSEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCeEEEE
Confidence 79999999999999998765443
No 107
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.8e-28 Score=258.10 Aligned_cols=150 Identities=11% Similarity=0.031 Sum_probs=126.2
Q ss_pred CeeEEEECCCCCEEEEEecCCcEEEEECCCCcee--Eee----e-----cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 013184 280 PVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAI--MPL----C-----GHLDFSFASAWHPDGRIFATGNQDKTCRVWD 348 (448)
Q Consensus 280 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~--~~l----~-----~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd 348 (448)
.+.+++|+|++++|++|+.|++|++||+.++... ..+ . +|...|.+++|+|+|++||+|+.||+|+||+
T Consensus 437 ~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd 516 (902)
T 2oaj_A 437 TKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFK 516 (902)
T ss_dssp CCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEE
Confidence 3445567899999999999999999999887532 111 1 7899999999999999999999999999999
Q ss_pred ccCCC--------------------------------------------cceEEEccCCCCeEEEEEcCCCCEEEEEeCC
Q 013184 349 VRNLS--------------------------------------------KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA 384 (448)
Q Consensus 349 ~~~~~--------------------------------------------~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d 384 (448)
+.... +++..+.+|.++|++++|||+| +||+|+.|
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D 595 (902)
T 2oaj_A 517 YEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAA 595 (902)
T ss_dssp EEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETT
T ss_pred ecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCC
Confidence 97531 2467888999999999999999 99999999
Q ss_pred CeEEEEECCCCceee-----eee-cCcCceEEEEEc-----cCC---CeEEEEEecCCcc
Q 013184 385 DFVHVYDAKNGFEKE-----QEI-DFFGEISGMTFS-----PDT---EALFIGVWDRTYG 430 (448)
Q Consensus 385 ~~v~vwd~~~~~~~~-----~~~-~~~~~v~~~~fs-----pdg---~~L~~~~~D~~~~ 430 (448)
++|+|||+.++..+. .+. +|.+.|++++|+ ||| ++|++|+.|+++.
T Consensus 596 ~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~ 655 (902)
T 2oaj_A 596 GSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVI 655 (902)
T ss_dssp SEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEE
T ss_pred CcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEE
Confidence 999999998776543 222 788889999999 885 8999999997654
No 108
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=2.9e-27 Score=230.91 Aligned_cols=258 Identities=12% Similarity=0.070 Sum_probs=189.0
Q ss_pred cceeeeC-CCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cCCEEEEEeCC
Q 013184 136 RNLVWST-SKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RDNLLIAGGFQ 210 (448)
Q Consensus 136 r~l~~~~-~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~~~lvsg~~d 210 (448)
..+.+.+ ....+++++ ++.|++|+..++................. ....+...|.++++ ++++|++|+.|
T Consensus 47 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 47 NTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRD-----HPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp EEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTT-----CTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred EEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccccccc-----ccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 3455666 666666664 77899999876544332221100000000 00012235899988 55799999999
Q ss_pred CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCC
Q 013184 211 GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPD 289 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~ 289 (448)
|.|++|++......... .+...+.++.+.....+..++++++.++.|++||+.+++.+..+. |..+|.+++|+|+
T Consensus 122 ~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~ 197 (408)
T 4a11_B 122 KTLKVWDTNTLQTADVF----NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPR 197 (408)
T ss_dssp SEEEEEETTTTEEEEEE----ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSS
T ss_pred CeEEEeeCCCCccceec----cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCC
Confidence 99999999876543222 234445566663322233489999999999999999998888887 8999999999999
Q ss_pred CC-EEEEEecCCcEEEEECCCCc-eeEee---------------ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 013184 290 GK-LLVIVGDNPEGILVDSQTGK-AIMPL---------------CGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNL 352 (448)
Q Consensus 290 ~~-~l~~~~~d~~i~i~d~~~~~-~~~~l---------------~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~ 352 (448)
++ ++++++.|+.|++||++++. .+..+ .+|...|.+++|+|++++|++++.|+.|++||+++.
T Consensus 198 ~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 198 YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence 88 68999999999999998765 33333 578899999999999999999999999999998752
Q ss_pred C----------------------------------------------cceEEEccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 013184 353 S----------------------------------------------KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADF 386 (448)
Q Consensus 353 ~----------------------------------------------~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~ 386 (448)
. .++..+.+|.+.|.+++|+|+|++|++++.||.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 357 (408)
T 4a11_B 278 ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCN 357 (408)
T ss_dssp CBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred ccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCe
Confidence 1 345667889999999999999999999999999
Q ss_pred EEEEECCCCceeeeee
Q 013184 387 VHVYDAKNGFEKEQEI 402 (448)
Q Consensus 387 v~vwd~~~~~~~~~~~ 402 (448)
|++||+.+++.+....
T Consensus 358 i~iw~~~~~~~~~~~~ 373 (408)
T 4a11_B 358 ILAWVPSLYEPVPDDD 373 (408)
T ss_dssp EEEEEECC--------
T ss_pred EEEEeCCCCCccCCCC
Confidence 9999999987665433
No 109
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.96 E-value=7.9e-27 Score=230.32 Aligned_cols=254 Identities=15% Similarity=0.212 Sum_probs=194.0
Q ss_pred ccceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeE
Q 013184 135 LRNLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGEL 213 (448)
Q Consensus 135 ~r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i 213 (448)
+..+.|++.+..++.+ .++.|++|++.++ ..+..+.+|.. .|.++++++.+|++|+.|+.+
T Consensus 150 V~sv~fspdg~~lasgs~Dg~v~iWd~~~~--~~~~~~~~h~~----------------~v~~~s~~~~~l~sgs~d~~i 211 (420)
T 4gga_A 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNMTSHSA----------------RVGSLSWNSYILSSGSRSGHI 211 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSS----------------CEEEEEEETTEEEEEETTSEE
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEEcCCC--cEEEEEeCCCC----------------ceEEEeeCCCEEEEEeCCCce
Confidence 3455677777777776 4778999998765 44555666665 488999999999999999999
Q ss_pred EEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceE----EEEe-ecCCCeeEEEECC
Q 013184 214 ICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQL----SKHF-SFPWPVNHTSLSP 288 (448)
Q Consensus 214 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~----~~~~-~~~~~v~~~~~sp 288 (448)
++|+....... ......|...+..+.+ +|++. ++++++.|+.+++|+..+++. +... .+...|.+++|+|
T Consensus 212 ~~~d~~~~~~~--~~~~~~h~~~~~~~~~--~~~g~-~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p 286 (420)
T 4gga_A 212 HHHDVRVAEHH--VATLSGHSQEVCGLRW--APDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 286 (420)
T ss_dssp EEEETTSSSCE--EEEEECCSSCEEEEEE--CTTSS-EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECT
T ss_pred eEeeeccccee--eEEecccccceeeeee--cCCCC-eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCC
Confidence 99998876543 2333455566666655 78876 899999999999999987642 2333 3889999999999
Q ss_pred C-CCEEEEE--ecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEe--CCCcEEEEEccCCCcceEEEccCC
Q 013184 289 D-GKLLVIV--GDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGN--QDKTCRVWDVRNLSKSVAVLKGNL 363 (448)
Q Consensus 289 ~-~~~l~~~--~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~ 363 (448)
. +.+++++ +.|+.|++||+.+++.+..+..| ..+.++.|+|+++.+++++ .|+.|+|||+++ .+++..+.+|.
T Consensus 287 ~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~-~~~v~~l~gH~ 364 (420)
T 4gga_A 287 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPT-MAKVAELKGHT 364 (420)
T ss_dssp TCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTT-CCEEEEECCCS
T ss_pred CcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCC-CcEEEEEcCCC
Confidence 5 4566654 47899999999999999888755 5688999999999888765 789999999987 78999999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEE
Q 013184 364 GAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTF 413 (448)
Q Consensus 364 ~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~f 413 (448)
+.|.+++|+|+|++|++|+.|++|+|||+...........+...+....|
T Consensus 365 ~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 365 SRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp SCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 99999999999999999999999999999876555444444444433333
No 110
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.96 E-value=3e-27 Score=243.68 Aligned_cols=264 Identities=18% Similarity=0.179 Sum_probs=217.0
Q ss_pred ccceeeeC--CCCeEEEec-CCeEEEEecCCC------ceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCE
Q 013184 135 LRNLVWST--SKHDVYLMS-HFSIVHWSSLSS------KRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNL 203 (448)
Q Consensus 135 ~r~l~~~~--~~~~v~~~~-~~~v~~w~~~~~------~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~ 203 (448)
+..+.+.+ .+..++.++ ++.|++|+..++ ....+..+.+|.. .|.++++ ++++
T Consensus 67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~----------------~v~~~~~s~~~~~ 130 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG----------------PISDISWDFEGRR 130 (615)
T ss_dssp EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS----------------CEEEEEECTTSSE
T ss_pred EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc----------------cEEEEEEeCCCCE
Confidence 44566777 777777764 778999998654 3344445555444 4888888 8899
Q ss_pred EEEEeCC----CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cC
Q 013184 204 LIAGGFQ----GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FP 278 (448)
Q Consensus 204 lvsg~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~ 278 (448)
|++++.+ +.|.+|+. ... ......|...+.++.+ +|++..++++++.|+.|++||+.+++.+..+. |.
T Consensus 131 l~~~~~~~~~~~~v~~~d~--~~~---~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~ 203 (615)
T 1pgu_A 131 LCVVGEGRDNFGVFISWDS--GNS---LGEVSGHSQRINACHL--KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH 203 (615)
T ss_dssp EEEEECCSSCSEEEEETTT--CCE---EEECCSCSSCEEEEEE--CSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS
T ss_pred EEEeccCCCCccEEEEEEC--CCc---ceeeecCCccEEEEEE--CCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccC
Confidence 9999988 78888873 221 2333456666777766 88887689999999999999999999998888 77
Q ss_pred C---CeeEEEECCC-CCEEEEEecCCcEEEEECCCCceeEee-e---cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 013184 279 W---PVNHTSLSPD-GKLLVIVGDNPEGILVDSQTGKAIMPL-C---GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVR 350 (448)
Q Consensus 279 ~---~v~~~~~sp~-~~~l~~~~~d~~i~i~d~~~~~~~~~l-~---~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~ 350 (448)
. .|.+++|+|+ +++|++++.++.|++||+.+++.+..+ . +|...|.+++|+ ++++|++++.|+.|++||++
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 204 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT 282 (615)
T ss_dssp CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred CCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC
Confidence 7 8999999999 999999999999999999999999998 6 899999999999 99999999999999999998
Q ss_pred CCCcceEEEccC----CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEec
Q 013184 351 NLSKSVAVLKGN----LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 351 ~~~~~~~~~~~~----~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D 426 (448)
+ .+.+..+..+ ...+.++.|+ ++++|++++.++.|++||+.++..+..+..|.+.|.+++| |+ |++++.|
T Consensus 283 ~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~d 356 (615)
T 1pgu_A 283 T-SKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYD 356 (615)
T ss_dssp T-TEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETT
T ss_pred C-CcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCC
Confidence 7 7777777766 3678888886 8999999999999999999998888888888888888888 76 5666655
Q ss_pred CC
Q 013184 427 RT 428 (448)
Q Consensus 427 ~~ 428 (448)
+.
T Consensus 357 g~ 358 (615)
T 1pgu_A 357 GR 358 (615)
T ss_dssp SC
T ss_pred Ce
Confidence 44
No 111
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.6e-27 Score=222.84 Aligned_cols=252 Identities=13% Similarity=0.051 Sum_probs=181.7
Q ss_pred eEEEecCCeEEEEecCCCc-eeEEEecCCCCCCCCC---CCCC------cccCCcceeeEEEEe--c----CCEEEEEeC
Q 013184 146 DVYLMSHFSIVHWSSLSSK-RTEVLDVSGHVAPCEK---HPGN------LLEGFTQTQVSTLAV--R----DNLLIAGGF 209 (448)
Q Consensus 146 ~v~~~~~~~v~~w~~~~~~-~~~~~~~~gh~~p~~~---~~~~------~~~~~~~~~i~~l~~--~----~~~lvsg~~ 209 (448)
-|.+++...|++|++.... -+.+....+|..|... .|+. -+..+....|.+|++ + +.++++++.
T Consensus 56 ~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~ 135 (356)
T 2w18_A 56 CIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGN 135 (356)
T ss_dssp EEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEE
T ss_pred EEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCC
Confidence 4777899999999997752 2566666766655321 1100 022233334555555 4 445555542
Q ss_pred CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEe--CCCcEEEEec-CCceEEEEee-cCCCeeEEE
Q 013184 210 QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASN--NDCGVRDFDM-ERFQLSKHFS-FPWPVNHTS 285 (448)
Q Consensus 210 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s--~dg~v~iwd~-~~~~~~~~~~-~~~~v~~~~ 285 (448)
+ +.+|.+ +.+ +++.+++ .|+.|++|++ .+++.+..+. |+..+..++
T Consensus 136 ~--~~v~~l---------------------------~~g-~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~ 185 (356)
T 2w18_A 136 I--KAVLGL---------------------------TKR-RLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILT 185 (356)
T ss_dssp E--EEEEEE---------------------------TTT-EEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEE
T ss_pred e--EEEEec---------------------------CCC-cEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEE
Confidence 2 334422 333 2444433 6999999999 5577777666 888999999
Q ss_pred ECC---CCCEEEEEecCCcEEEEECCCCceeEeeecCC---CcEEEEEEcCCCCEE------------EEEeCCCcEEEE
Q 013184 286 LSP---DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHL---DFSFASAWHPDGRIF------------ATGNQDKTCRVW 347 (448)
Q Consensus 286 ~sp---~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~---~~v~~~~~~p~g~~l------------~s~~~d~~i~iw 347 (448)
|+| ++.+|++++.|++|+|||+.+|++++++.+|. ..+.+++|+|+|.++ ++|+.|++|++|
T Consensus 186 fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW 265 (356)
T 2w18_A 186 FAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI 265 (356)
T ss_dssp EEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred eeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence 999 77999999999999999999999999998754 357778999999876 668889999999
Q ss_pred EccCCCcceEEE-----ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceE-EEEEccCCCeEE
Q 013184 348 DVRNLSKSVAVL-----KGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEIS-GMTFSPDTEALF 421 (448)
Q Consensus 348 d~~~~~~~~~~~-----~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~-~~~fspdg~~L~ 421 (448)
|..+ ++.+..+ .+|...+.+..++ |.++|+++.|++|+|||+.+++.+.++.+|...+. .++|+|||++|+
T Consensus 266 d~~t-gk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La 342 (356)
T 2w18_A 266 NPKT-TLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL 342 (356)
T ss_dssp ETTT-TEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEE
T ss_pred ECCC-CEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEE
Confidence 9976 6666655 3666555444444 88999999999999999999999999988887655 689999999999
Q ss_pred EEEecCCcc
Q 013184 422 IGVWDRTYG 430 (448)
Q Consensus 422 ~~~~D~~~~ 430 (448)
+|+.|++++
T Consensus 343 SGS~D~TIk 351 (356)
T 2w18_A 343 AGQKDGNIF 351 (356)
T ss_dssp EECTTSCEE
T ss_pred EEECCCcEE
Confidence 999998865
No 112
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=2.4e-27 Score=229.75 Aligned_cols=194 Identities=8% Similarity=0.094 Sum_probs=155.2
Q ss_pred eEEEEe--cCCEEEE--EeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc
Q 013184 194 VSTLAV--RDNLLIA--GGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF 269 (448)
Q Consensus 194 i~~l~~--~~~~lvs--g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~ 269 (448)
+.++++ +|++|++ |+.|++|++|++.+...... + . +...+.+++| +|+|. ++++++. +.+++|+..++
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~--~-~-~~~~V~~v~f--spdg~-~l~s~s~-~~~~~~~~~~~ 207 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE--I-E-TRGEVKDLHF--STDGK-VVAYITG-SSLEVISTVTG 207 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE--E-E-CSSCCCEEEE--CTTSS-EEEEECS-SCEEEEETTTC
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE--e-C-CCCceEEEEE--ccCCc-eEEeccc-eeEEEEEeccC
Confidence 445555 8888765 44789999999987654322 2 2 3445667766 99987 7777774 55667776666
Q ss_pred eEEEEee---cCCCeeEEEECCCCCEEEEEecCC----cEEEEECCCCce----eEeeecCCCcEEEEEEcCCCCEEEEE
Q 013184 270 QLSKHFS---FPWPVNHTSLSPDGKLLVIVGDNP----EGILVDSQTGKA----IMPLCGHLDFSFASAWHPDGRIFATG 338 (448)
Q Consensus 270 ~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~----~i~i~d~~~~~~----~~~l~~h~~~v~~~~~~p~g~~l~s~ 338 (448)
+.+.... |...|.+++|+|+++.+++++.++ .+++|++..+.. ...+.+|...|.+++|+|+|++||+|
T Consensus 208 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasg 287 (365)
T 4h5i_A 208 SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLA 287 (365)
T ss_dssp CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEE
T ss_pred cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEE
Confidence 6543322 778899999999999999999877 588899876653 34677899999999999999999999
Q ss_pred eCCCcEEEEEccCCCcceEEE-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 013184 339 NQDKTCRVWDVRNLSKSVAVL-KGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGF 396 (448)
Q Consensus 339 ~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~ 396 (448)
+.|++|+|||+++ .+++..+ .+|..+|++++|||||++||+|+.|++|+||++....
T Consensus 288 s~D~~V~iwd~~~-~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 288 SNDNSIALVKLKD-LSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp ETTSCEEEEETTT-TEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred cCCCEEEEEECCC-CcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 9999999999987 6777764 7899999999999999999999999999999997653
No 113
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.8e-27 Score=256.10 Aligned_cols=225 Identities=12% Similarity=0.058 Sum_probs=187.1
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
.|+++++ ++++||+|+.||.|++|+...... .....+...+.++.| +| |. +|++++.|++|++||+.+++
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~----~~~~~~~~~V~~l~f--sp-g~-~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV----VIKLEDRSAIKEMRF--VK-GI-YLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEE----EEECSSCCCEEEEEE--ET-TT-EEEEEETTCEEEEEETTTCS
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE----EEEcCCCCCEEEEEE--cC-CC-EEEEEECcCeEEEEECCCCc
Confidence 4899988 889999999999999999765432 122234556667766 77 65 89999999999999999999
Q ss_pred EEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCcee-----------EeeecCCCcEEEEEEcCC-CCEEEEE
Q 013184 271 LSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAI-----------MPLCGHLDFSFASAWHPD-GRIFATG 338 (448)
Q Consensus 271 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~-----------~~l~~h~~~v~~~~~~p~-g~~l~s~ 338 (448)
++..+.+...|++++|+|++++|++|+.||.|++||+.+++.. ..+.+|...|.+++|+|+ +..|++|
T Consensus 91 ~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g 170 (902)
T 2oaj_A 91 VLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS 170 (902)
T ss_dssp EEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEE
Confidence 9988888899999999999999999999999999999988754 234679999999999996 5799999
Q ss_pred eCCCcEEEEEccCCCcceEEEccC------------------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee
Q 013184 339 NQDKTCRVWDVRNLSKSVAVLKGN------------------LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400 (448)
Q Consensus 339 ~~d~~i~iwd~~~~~~~~~~~~~~------------------~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~ 400 (448)
+.|+.| +||++. .+++..+..| ...|++++|+|+|++||+|+.|+.|++||+.+++.+..
T Consensus 171 ~~dg~v-lWd~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 171 YEYVTL-TYSLVE-NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMA 248 (902)
T ss_dssp CSSCEE-EEETTT-TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEE
T ss_pred eCCCcE-EEECCC-CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE
Confidence 999999 999987 6777777765 46799999999999999999999999999999876542
Q ss_pred --ee----------------cCcCceEEEEEcc----CC-CeEEEEEecC
Q 013184 401 --EI----------------DFFGEISGMTFSP----DT-EALFIGVWDR 427 (448)
Q Consensus 401 --~~----------------~~~~~v~~~~fsp----dg-~~L~~~~~D~ 427 (448)
+. .|...|.+++|+| ++ ..|++|+.|.
T Consensus 249 r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~ 298 (902)
T 2oaj_A 249 RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSIS 298 (902)
T ss_dssp ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECST
T ss_pred EeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCC
Confidence 21 1345799999964 43 5677777764
No 114
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=6.3e-26 Score=224.12 Aligned_cols=266 Identities=13% Similarity=0.067 Sum_probs=209.6
Q ss_pred ceeeeCCCCeEEEec--CCeEEEEecCCCceeEEEec---CCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeC
Q 013184 137 NLVWSTSKHDVYLMS--HFSIVHWSSLSSKRTEVLDV---SGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGF 209 (448)
Q Consensus 137 ~l~~~~~~~~v~~~~--~~~v~~w~~~~~~~~~~~~~---~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~ 209 (448)
.+.+.+ ...+++++ ++.|++|++.+++....... .+|. ..|.++++ +++++++++.
T Consensus 127 ~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~~~s~~~ 189 (433)
T 3bws_A 127 SVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL----------------GFVETISIPEHNELWVSQMQ 189 (433)
T ss_dssp CCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC----------------CEEEEEEEGGGTEEEEEEGG
T ss_pred EEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC----------------CceeEEEEcCCCEEEEEECC
Confidence 445666 55666654 45699999877665543321 1222 25888888 7889999999
Q ss_pred CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCC
Q 013184 210 QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPD 289 (448)
Q Consensus 210 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~ 289 (448)
+|.|++|++.+..... .+ ..+...+.++.+ +|++..++++++.++.|++||+.+++.+..+.....+.+++|+|+
T Consensus 190 d~~v~~~d~~~~~~~~--~~-~~~~~~~~~~~~--~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 264 (433)
T 3bws_A 190 ANAVHVFDLKTLAYKA--TV-DLTGKWSKILLY--DPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKD 264 (433)
T ss_dssp GTEEEEEETTTCCEEE--EE-ECSSSSEEEEEE--ETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTT
T ss_pred CCEEEEEECCCceEEE--EE-cCCCCCeeEEEE--cCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCC
Confidence 9999999998765432 22 244555666666 888886667777899999999999999888887777999999999
Q ss_pred CCEEEEEe--------cCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCE-EEEEeCCCcEEEEEccCCCcceEEEc
Q 013184 290 GKLLVIVG--------DNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRI-FATGNQDKTCRVWDVRNLSKSVAVLK 360 (448)
Q Consensus 290 ~~~l~~~~--------~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~-l~s~~~d~~i~iwd~~~~~~~~~~~~ 360 (448)
++.+++++ .++.|++||+.+++.+..+ .|...+.+++|+|+++. +++++.++.|++||+.+ ++.+..+.
T Consensus 265 g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~-~~~~~~~~ 342 (433)
T 3bws_A 265 GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE-KKVQKSIP 342 (433)
T ss_dssp SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT-TEEEEEEE
T ss_pred CCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC-CcEEEEec
Confidence 99999888 4889999999999887766 35668899999999975 56668999999999976 66666665
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeC---------------CCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 361 GNLGAIRSIRFTSDGNFMAMAEP---------------ADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 361 ~~~~~v~~l~~sp~g~~l~s~~~---------------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
+...+.+++|+|+|++|++++. ||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++.
T Consensus 343 -~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~ 420 (433)
T 3bws_A 343 -VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDF 420 (433)
T ss_dssp -CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEET
T ss_pred -CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEEC
Confidence 6678999999999999998876 46999999999887766654 567999999999999998886
Q ss_pred -cCC
Q 013184 426 -DRT 428 (448)
Q Consensus 426 -D~~ 428 (448)
|++
T Consensus 421 ~d~~ 424 (433)
T 3bws_A 421 LDHQ 424 (433)
T ss_dssp TTTE
T ss_pred CCCe
Confidence 643
No 115
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=4.5e-27 Score=232.86 Aligned_cols=241 Identities=14% Similarity=0.183 Sum_probs=188.7
Q ss_pred ceeeeCCCC-eEEEe-cCCeEEEEecCCC--------ceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCC-E
Q 013184 137 NLVWSTSKH-DVYLM-SHFSIVHWSSLSS--------KRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDN-L 203 (448)
Q Consensus 137 ~l~~~~~~~-~v~~~-~~~~v~~w~~~~~--------~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~-~ 203 (448)
.+.+++... .++.+ .++.|++|+..+. ....+..+.+|.. .|.++++ ++. +
T Consensus 133 ~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~----------------~v~~l~~~~~~~~~ 196 (430)
T 2xyi_A 133 RARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK----------------EGYGLSWNPNLNGY 196 (430)
T ss_dssp EEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS----------------CCCCEEECTTSTTE
T ss_pred EEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC----------------CeEEEEeCCCCCCe
Confidence 345556533 34444 3678999998541 1233333334433 4788888 455 9
Q ss_pred EEEEeCCCeEEEEEcCCCCce----eEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc---eEEEEee
Q 013184 204 LIAGGFQGELICKYLDQPGVS----FCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF---QLSKHFS 276 (448)
Q Consensus 204 lvsg~~dg~i~vw~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~ 276 (448)
|++|+.||.|++|++...... ........|...+.++.+ +|.+..+|++++.|+.|++||++++ +.+..+.
T Consensus 197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~ 274 (430)
T 2xyi_A 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW--HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD 274 (430)
T ss_dssp EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEE--CSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE
T ss_pred EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEE--eCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee
Confidence 999999999999999874321 112233356666777766 8866669999999999999999876 4555554
Q ss_pred -cCCCeeEEEECCCCC-EEEEEecCCcEEEEECCC-CceeEeeecCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEEccCC
Q 013184 277 -FPWPVNHTSLSPDGK-LLVIVGDNPEGILVDSQT-GKAIMPLCGHLDFSFASAWHPDGR-IFATGNQDKTCRVWDVRNL 352 (448)
Q Consensus 277 -~~~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~-~~~~~~l~~h~~~v~~~~~~p~g~-~l~s~~~d~~i~iwd~~~~ 352 (448)
|...|++++|+|++. ++++++.|+.|++||+++ ++.+..+.+|...|.+++|+|+++ +|++++.|+.|+|||++..
T Consensus 275 ~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 889999999999887 788999999999999998 567888999999999999999985 7999999999999999763
Q ss_pred C-------------cceEEEccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 013184 353 S-------------KSVAVLKGNLGAIRSIRFTSDGN-FMAMAEPADFVHVYDAKNG 395 (448)
Q Consensus 353 ~-------------~~~~~~~~~~~~v~~l~~sp~g~-~l~s~~~d~~v~vwd~~~~ 395 (448)
. ..+..+.+|...|++++|+|+++ +|++++.||.|+||++...
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 2 55677788999999999999999 9999999999999998754
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-27 Score=253.47 Aligned_cols=239 Identities=17% Similarity=0.214 Sum_probs=194.9
Q ss_pred cceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--c--CCEEEEEeCC
Q 013184 136 RNLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--R--DNLLIAGGFQ 210 (448)
Q Consensus 136 r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~--~~~lvsg~~d 210 (448)
+.+.+.+.+..++++ .++.|++|+..++....+..+.+|..+ |.++++ + +++|++|+.|
T Consensus 13 ~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~----------------V~~l~~s~~~~~~~l~s~s~D 76 (753)
T 3jro_A 13 HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGP----------------VWRVDWAHPKFGTILASCSYD 76 (753)
T ss_dssp EEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSC----------------EEEEEECCTTSCSEEEEEETT
T ss_pred EEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCc----------------eEEEEecCCCCCCEEEEEeCC
Confidence 344566666667776 478899999876666777778887664 899998 3 8999999999
Q ss_pred CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCC--CCeeEEEEeCCCcEEEEecCCce---EEEEeecCCCeeEEE
Q 013184 211 GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPS--GGIHFMASNNDCGVRDFDMERFQ---LSKHFSFPWPVNHTS 285 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~v~~~~ 285 (448)
|.|++|++.+..... ......|...+.++.+ +|+ +. .+++|+.||.|++||+.++. ......|...|.+++
T Consensus 77 g~I~vwd~~~~~~~~-~~~~~~h~~~V~~v~~--sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~ 152 (753)
T 3jro_A 77 GKVLIWKEENGRWSQ-IAVHAVHSASVNSVQW--APHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (753)
T ss_dssp SCEEEEEEETTEEEE-EEEECCCSSCEEEEEE--CCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEE
T ss_pred CeEEEEECCCCcccc-cccccCCCCCeEEEEE--CCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEE
Confidence 999999998765322 3334456666777776 787 55 89999999999999998763 222233889999999
Q ss_pred ECC-------------CCCEEEEEecCCcEEEEECCCC----ceeEeeecCCCcEEEEEEcCC---CCEEEEEeCCCcEE
Q 013184 286 LSP-------------DGKLLVIVGDNPEGILVDSQTG----KAIMPLCGHLDFSFASAWHPD---GRIFATGNQDKTCR 345 (448)
Q Consensus 286 ~sp-------------~~~~l~~~~~d~~i~i~d~~~~----~~~~~l~~h~~~v~~~~~~p~---g~~l~s~~~d~~i~ 345 (448)
|+| ++..+++++.||.|++||++++ ..+..+.+|...|.+++|+|+ +++|++|+.||.|+
T Consensus 153 ~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~ 232 (753)
T 3jro_A 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232 (753)
T ss_dssp ECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEE
T ss_pred ecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEE
Confidence 999 5899999999999999999887 456778899999999999999 89999999999999
Q ss_pred EEEccCCCc----ceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 013184 346 VWDVRNLSK----SVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 346 iwd~~~~~~----~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~ 394 (448)
+||++.... .+.....|.+.|.+++|+|+|++|++|+.||.|++|++..
T Consensus 233 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 999986321 3333456888999999999999999999999999999874
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=2.4e-25 Score=216.84 Aligned_cols=248 Identities=15% Similarity=0.138 Sum_probs=196.0
Q ss_pred cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEE-EEEeCCCeEEEEEcCCCCceeEE
Q 013184 151 SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLL-IAGGFQGELICKYLDQPGVSFCS 227 (448)
Q Consensus 151 ~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~l-vsg~~dg~i~vw~~~~~~~~~~~ 227 (448)
.++.|++|++.+++....+.. |. .+.++++ ++++| ++++.+|.|++|++.+.... .
T Consensus 10 ~d~~v~v~d~~~~~~~~~~~~--~~-----------------~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~--~ 68 (391)
T 1l0q_A 10 ESDNISVIDVTSNKVTATIPV--GS-----------------NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI--A 68 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEEC--SS-----------------SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--E
T ss_pred CCCEEEEEECCCCeEEEEeec--CC-----------------CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE--E
Confidence 467899999877655444432 22 2577777 77765 67779999999999776543 2
Q ss_pred EeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEE-EEEecCCcEEEEE
Q 013184 228 RTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLL-VIVGDNPEGILVD 306 (448)
Q Consensus 228 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~i~i~d 306 (448)
.+..+ . .+.++.+ +|++..++++++.++.|++||+.+++.+..+.+...+.+++|+|+++.+ ++++.++.|++||
T Consensus 69 ~~~~~-~-~v~~~~~--spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 144 (391)
T 1l0q_A 69 TVPAG-S-SPQGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVIN 144 (391)
T ss_dssp EEECS-S-SEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEECC-C-CccceEE--CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 22222 2 4455555 8999866677778899999999999999888877889999999999977 6777899999999
Q ss_pred CCCCceeEeeecCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEe---
Q 013184 307 SQTGKAIMPLCGHLDFSFASAWHPDGRIF-ATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAE--- 382 (448)
Q Consensus 307 ~~~~~~~~~l~~h~~~v~~~~~~p~g~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~--- 382 (448)
+.+++.+..+..+ ..+.+++|+|++++| ++++.++.|++||+++ .+.+..+. +...+.+++|+|+|++|++++
T Consensus 145 ~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~ 221 (391)
T 1l0q_A 145 TVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDK 221 (391)
T ss_dssp TTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSEEEEEEECTTSSEEEEEEECS
T ss_pred CCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CeEEEEEe-cCCCccceEECCCCCEEEEEecCc
Confidence 9999998888765 456899999999977 5777889999999986 56666555 456789999999999999988
Q ss_pred CCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEE-EecC
Q 013184 383 PADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG-VWDR 427 (448)
Q Consensus 383 ~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~-~~D~ 427 (448)
.++.|++||+.+++.+..+..+ ..+.+++|+|+|++|+++ +.|+
T Consensus 222 ~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~ 266 (391)
T 1l0q_A 222 YFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFXN 266 (391)
T ss_dssp SCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTT
T ss_pred CCCcEEEEECCCCeEEEEEecC-CCccEEEEccCCCEEEEEcCCCC
Confidence 6899999999998877766655 458899999999988655 4443
No 118
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-27 Score=236.17 Aligned_cols=229 Identities=11% Similarity=0.082 Sum_probs=178.9
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCce-------eEE--------------------EeecCCCCceeeEEEE
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVS-------FCS--------------------RTTYDENAITNAVEIY 243 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~-------~~~--------------------~~~~~~~~~~~~v~~~ 243 (448)
.|.++++ +|+++|+++.|++|+ +....... +.. .+...+...+.++.
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~va-- 92 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCK-- 92 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEE--
T ss_pred cEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEE--
Confidence 4677777 999999999999996 43222200 000 01112234444554
Q ss_pred eCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCC-----CeeEEEECCCCCEEEEEecCCcEEEEECCCCce------
Q 013184 244 NSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPW-----PVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKA------ 312 (448)
Q Consensus 244 ~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-----~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~------ 312 (448)
++|+|. .|++++.||.|++|+.++ ++..+.|.. .|.+++|||+|++||+|+.||+|+|||+.+++.
T Consensus 93 wSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i 169 (588)
T 2j04_A 93 PSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFY 169 (588)
T ss_dssp ECSSSS-CEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCE
T ss_pred ECCCCC-EEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccce
Confidence 599987 899999999999999654 555555443 499999999999999999999999999998863
Q ss_pred -eEee----ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCc--ceEEE-ccCCCCeEEEEEcCCCCEEEEEeCC
Q 013184 313 -IMPL----CGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSK--SVAVL-KGNLGAIRSIRFTSDGNFMAMAEPA 384 (448)
Q Consensus 313 -~~~l----~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~--~~~~~-~~~~~~v~~l~~sp~g~~l~s~~~d 384 (448)
+.++ .+|...|.+++|+|+| +++++.|++|++|++..... ...++ .+|...|.+++|+ |+.||+++ +
T Consensus 170 ~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~ 244 (588)
T 2j04_A 170 FESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-P 244 (588)
T ss_dssp EEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-S
T ss_pred eeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-C
Confidence 5666 6688899999999999 88889999999999976321 23566 4788899999999 68999997 6
Q ss_pred CeEEEEECCCCceeeeeecCcCceEEEEE--ccCCCeEEEEEecCCcceEEEE
Q 013184 385 DFVHVYDAKNGFEKEQEIDFFGEISGMTF--SPDTEALFIGVWDRTYGSLLQY 435 (448)
Q Consensus 385 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~f--spdg~~L~~~~~D~~~~~ll~~ 435 (448)
+.|++||+.+++......+|.+.|.+++| +|++..|++++.||+ +++..
T Consensus 245 ~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~--klw~~ 295 (588)
T 2j04_A 245 GYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY--KVLLE 295 (588)
T ss_dssp SEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE--EEEES
T ss_pred CeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC--EEEee
Confidence 89999999987764444489999999999 999999999998877 55554
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.6e-26 Score=223.02 Aligned_cols=221 Identities=12% Similarity=0.081 Sum_probs=177.6
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
.|.++++ ++++|++|+.+| +++|++........ . ...+ +..+.+ .++++.++++++.|++|++||+.+++
T Consensus 21 ~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~--~--~~~~-~~~~~~--~~~~~~~~~~~~~d~~v~iWd~~~~~ 92 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS--Q--EMRH-LSKVRM--LHRTNYVAFVTGVKEVVHIWDDVKKQ 92 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE--E--ECSC-CCEEEE--CTTSSEEEEECSSTTEEEEEETTTTE
T ss_pred ceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee--e--ecCC-eEEEEE--cCCCCEEEEEECCccEEEEEECCCCc
Confidence 5889988 889999988776 68999875432211 1 1112 445555 56666566788889999999999999
Q ss_pred EEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCC-ceeEeeecCCCcEEEEEEcCCCCEEEE--EeCCCcEEEE
Q 013184 271 LSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTG-KAIMPLCGHLDFSFASAWHPDGRIFAT--GNQDKTCRVW 347 (448)
Q Consensus 271 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~~~~~p~g~~l~s--~~~d~~i~iw 347 (448)
++..+.+..+|.+++++++. ++++ .++.|++||+.++ +.+..+.. ....++++| .++++ |+.+|.|++|
T Consensus 93 ~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iw 164 (355)
T 3vu4_A 93 DVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHIT 164 (355)
T ss_dssp EEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEE
T ss_pred EEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEE
Confidence 99999998999999999764 4444 4679999999998 77776665 445567777 56666 6889999999
Q ss_pred EccCCC--------------cc-eEEEccCCCCeEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceeeeee-c-CcCceE
Q 013184 348 DVRNLS--------------KS-VAVLKGNLGAIRSIRFTSDGNFMAMAEPADF-VHVYDAKNGFEKEQEI-D-FFGEIS 409 (448)
Q Consensus 348 d~~~~~--------------~~-~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~-v~vwd~~~~~~~~~~~-~-~~~~v~ 409 (448)
|+++.. .+ +..+.+|.++|++++|+|+|++||+|+.|++ |+|||+.+++.+..+. + |.+.|.
T Consensus 165 d~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~ 244 (355)
T 3vu4_A 165 KLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVV 244 (355)
T ss_dssp ECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEE
T ss_pred ECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEE
Confidence 998632 12 7889999999999999999999999999998 9999999999998887 5 999999
Q ss_pred EEEEccCCCeEEEEEecCCc
Q 013184 410 GMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 410 ~~~fspdg~~L~~~~~D~~~ 429 (448)
+++|+|+|++|++++.|+++
T Consensus 245 ~~~~s~~~~~l~s~s~d~~v 264 (355)
T 3vu4_A 245 DMKWSTDGSKLAVVSDKWTL 264 (355)
T ss_dssp EEEECTTSCEEEEEETTCEE
T ss_pred EEEECCCCCEEEEEECCCEE
Confidence 99999999999999999653
No 120
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=4.9e-26 Score=218.87 Aligned_cols=236 Identities=14% Similarity=0.098 Sum_probs=182.6
Q ss_pred cceeeeCCC---CeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeC
Q 013184 136 RNLVWSTSK---HDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGF 209 (448)
Q Consensus 136 r~l~~~~~~---~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~ 209 (448)
..+.+.+.. ..++.++ ++.|++|+..+........+.+|.. .|.++++ ++++|++|+.
T Consensus 43 ~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~----------------~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 43 GCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG----------------PVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp EEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSS----------------CEEEEEECTTSSEEEEEET
T ss_pred EEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccC----------------CEEEEEECcCCCEEEEEcC
Confidence 344566663 4555554 7789999987634333344445554 4889988 7889999999
Q ss_pred CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecC-----------
Q 013184 210 QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFP----------- 278 (448)
Q Consensus 210 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~----------- 278 (448)
||.|++|++...... . ...+...+.++.+..+|++. +|++++.|+.|++||+++++.+..+...
T Consensus 107 dg~v~iwd~~~~~~~---~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 181 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAI---Q-IAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP 181 (368)
T ss_dssp TSEEEEEETTTTEEE---E-EEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETT
T ss_pred CCcEEEEEcCCCCce---e-eccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCC
Confidence 999999999876532 2 23466677788876677765 8999999999999999987766555532
Q ss_pred -------------------------------CCeeEEEECCCCCE----EEEEecCCcEEEEECCCC---ceeEeeecCC
Q 013184 279 -------------------------------WPVNHTSLSPDGKL----LVIVGDNPEGILVDSQTG---KAIMPLCGHL 320 (448)
Q Consensus 279 -------------------------------~~v~~~~~sp~~~~----l~~~~~d~~i~i~d~~~~---~~~~~l~~h~ 320 (448)
..+.++++.++... +++++.++.|++|++... +.+..+.+|.
T Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 182 MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence 23344444443333 899999999999999887 5567777776
Q ss_pred C------------cEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 013184 321 D------------FSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVH 388 (448)
Q Consensus 321 ~------------~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~ 388 (448)
. .|.+++|+|++++|++|+.||.|++||+++ ++++..+.+|..+|.+++|+|+|++|++|+.|+..+
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~ 340 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA-RTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSK 340 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT-TEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTT
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC-CcEEEEecCCCCCceEEEECCCCCeEEEEecccccc
Confidence 5 799999999999999999999999999987 788899999999999999999999999999988655
Q ss_pred EEECC
Q 013184 389 VYDAK 393 (448)
Q Consensus 389 vwd~~ 393 (448)
.|++.
T Consensus 341 ~~~~~ 345 (368)
T 3mmy_A 341 GHEFY 345 (368)
T ss_dssp CGGGC
T ss_pred ccccc
Confidence 55543
No 121
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=8.1e-25 Score=206.44 Aligned_cols=235 Identities=15% Similarity=0.208 Sum_probs=186.4
Q ss_pred cceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEE
Q 013184 136 RNLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELI 214 (448)
Q Consensus 136 r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~ 214 (448)
..+.+.+....++.+ .+++|++|+..+++ .+..+.+|.. .+.+++..+.+|++|+.++.++
T Consensus 71 ~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~--~~~~~~~h~~----------------~~~~~~~~~~~l~s~~~~~~~~ 132 (318)
T 4ggc_A 71 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQK--RLRNMTSHSA----------------RVGSLSWNSYILSSGSRSGHIH 132 (318)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEEEECCSS----------------CEEEEEEETTEEEEEETTSEEE
T ss_pred EEEEECCCCCEEEEEECCCcEEEeecCCce--eEEEecCccc----------------eEEEeecCCCEEEEEecCCceE
Confidence 445566777777665 47789999987754 4444556554 3778888999999999999999
Q ss_pred EEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEE-----EEeecCCCeeEEEECCC
Q 013184 215 CKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLS-----KHFSFPWPVNHTSLSPD 289 (448)
Q Consensus 215 vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~-----~~~~~~~~v~~~~~sp~ 289 (448)
+|+....... ......|...+..+.+ .+.+. ++++++.|+.|++||+.+++.. ....+...|.+++++|.
T Consensus 133 ~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 207 (318)
T 4ggc_A 133 HHDVRVAEHH--VATLSGHSQEVCGLRW--APDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 207 (318)
T ss_dssp EEETTSSSCE--EEEEECCSSCEEEEEE--CTTSS-EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTT
T ss_pred eeecCCCcee--EEEEcCccCceEEEEE--cCCCC-EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCC
Confidence 9998776543 2333455555556655 77776 8999999999999999876522 22237788999999996
Q ss_pred CC-EE--EEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEe--CCCcEEEEEccCCCcceEEEccCCC
Q 013184 290 GK-LL--VIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGN--QDKTCRVWDVRNLSKSVAVLKGNLG 364 (448)
Q Consensus 290 ~~-~l--~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~ 364 (448)
+. .+ ++++.++.|++||........... +...+..+.|+|++..+++++ .|+.|+|||+++ ++++..+.+|.+
T Consensus 208 ~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~-~~~~~~l~gH~~ 285 (318)
T 4ggc_A 208 QSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT-MAKVAELKGHTS 285 (318)
T ss_dssp STTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT-CCEEEEECCCSS
T ss_pred CCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCC-CcEEEEEcCCCC
Confidence 55 33 345678899999999888776554 677899999999999887765 799999999987 889999999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 013184 365 AIRSIRFTSDGNFMAMAEPADFVHVYDAKNG 395 (448)
Q Consensus 365 ~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~ 395 (448)
+|++++|+|+|++||+|+.|++|+|||+...
T Consensus 286 ~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 286 RVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999999999999999999999999998764
No 122
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3e-26 Score=227.54 Aligned_cols=219 Identities=12% Similarity=0.053 Sum_probs=171.5
Q ss_pred ceeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCC----CceeeEEEEeCCCCCeeEEEEeCCCcEEEE
Q 013184 191 QTQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDEN----AITNAVEIYNSPSGGIHFMASNNDCGVRDF 264 (448)
Q Consensus 191 ~~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~s~dg~v~iw 264 (448)
...|.++++ +|.+||+++.||+|++|+... +.....++. ..+.+++| +|+|. +|++|+.||+|++|
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l~~~~~~~~~sv~svaf--SPDG~-~LAsgs~DGtVkIW 156 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNLDSKGNLSSRTYHCFEW--NPIES-SIVVGNEDGELQFF 156 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----EEEECCCSSCSTTTCEEEEEE--CSSSS-CEEEEETTSEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----eeeeccCCCccccccEEEEEE--cCCCC-EEEEEcCCCEEEEE
Confidence 457999988 999999999999999999543 222222222 13556655 99987 99999999999999
Q ss_pred ecCCce-------EEEEee-----cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCce---eEee-ecCCCcEEEEEE
Q 013184 265 DMERFQ-------LSKHFS-----FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKA---IMPL-CGHLDFSFASAW 328 (448)
Q Consensus 265 d~~~~~-------~~~~~~-----~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~---~~~l-~~h~~~v~~~~~ 328 (448)
++.+++ .+..+. |...|.+++|+|+| +++++.|+.|++||+.+++. .+++ .+|...|.+++|
T Consensus 157 d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF 234 (588)
T 2j04_A 157 SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI 234 (588)
T ss_dssp ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred ECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence 999875 245542 56799999999999 88899999999999988773 3566 478899999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEE--cCCCCEEEEEeCCCeEEEEECCC------C-----
Q 013184 329 HPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRF--TSDGNFMAMAEPADFVHVYDAKN------G----- 395 (448)
Q Consensus 329 ~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~--sp~g~~l~s~~~d~~v~vwd~~~------~----- 395 (448)
+ |+.||+++ +++|++||+.. +.......+|.+.|..++| +|+|..|++|..+|. ++|.... +
T Consensus 235 s--g~~LASa~-~~tIkLWd~~~-~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~ 309 (588)
T 2j04_A 235 V--DYKVVLTC-PGYVHKIDLKN-YSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPY 309 (588)
T ss_dssp E--TTEEEEEC-SSEEEEEETTT-TEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHH
T ss_pred E--CCEEEEEe-CCeEEEEECCC-CeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEE
Confidence 9 68999987 69999999975 4443444489999999999 999999999999999 9998642 1
Q ss_pred ------------ceeeeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 396 ------------FEKEQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 396 ------------~~~~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
..... ..+...|.+++|||||+.||+++.
T Consensus 310 ~d~~v~lW~~~g~~l~~-~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 310 LEKKFKKWSTIWNEFNN-YETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHHHHHHTTTTTTSSSS-SCCEEEEEEEEECTTSSEEEEEEE
T ss_pred cCCEEEEEECCCCceee-eccceEEEEEEECCCCCEEEEEEe
Confidence 01111 112335999999999999998864
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=8.2e-26 Score=211.37 Aligned_cols=188 Identities=12% Similarity=0.104 Sum_probs=144.7
Q ss_pred cCCEEEEEe--CCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-
Q 013184 200 RDNLLIAGG--FQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS- 276 (448)
Q Consensus 200 ~~~~lvsg~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~- 276 (448)
+++++.+++ .|+.|++|++...+... .. ...+...+..+.|.+.+..+.+|++++.|++|+|||+.++++++.+.
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~-~s-~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g 221 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGK-EN-QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHI 221 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEE-EE-EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCcEEEecccCCCCcEEEEEECCCCcee-ee-eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcC
Confidence 444445433 59999999996655322 22 22444555677775544555699999999999999999999999987
Q ss_pred c---CCCeeEEEECCCCCEE------------EEEecCCcEEEEECCCCceeEee-----ecCCCcEEEEEEcCCCCEEE
Q 013184 277 F---PWPVNHTSLSPDGKLL------------VIVGDNPEGILVDSQTGKAIMPL-----CGHLDFSFASAWHPDGRIFA 336 (448)
Q Consensus 277 ~---~~~v~~~~~sp~~~~l------------~~~~~d~~i~i~d~~~~~~~~~l-----~~h~~~v~~~~~~p~g~~l~ 336 (448)
+ ...+.+++|+|+|+++ ++|+.|++|++||..+++.+..+ .+|...+.+..++ +.+++
T Consensus 222 ~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lA 299 (356)
T 2w18_A 222 DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAA 299 (356)
T ss_dssp CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEE
T ss_pred CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEE
Confidence 3 3467788999999887 55778999999999999987765 3677666555554 88999
Q ss_pred EEeCCCcEEEEEccCCCcceEEEccCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEEC
Q 013184 337 TGNQDKTCRVWDVRNLSKSVAVLKGNLGAIR-SIRFTSDGNFMAMAEPADFVHVYDA 392 (448)
Q Consensus 337 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~-~l~~sp~g~~l~s~~~d~~v~vwd~ 392 (448)
+|+.|++|+|||+.+ ++++.++.+|...+. +++|||+|++|++|+.|++|+|||+
T Consensus 300 SgS~DgTIkIWDl~t-Gk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 300 AILTSGTIAIWDLLL-GQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEETTSCEEEEETTT-CSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEcCCCcEEEEECCC-CcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999999999999987 899999999987655 6899999999999999999999995
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=1.6e-25 Score=219.06 Aligned_cols=219 Identities=12% Similarity=0.056 Sum_probs=154.7
Q ss_pred cCCeEEEEecCCCceeEE---EecCCCCCCCCCCCCCcccCCcceeeEEEEe----------cCCEEEEEeCCCeEEEEE
Q 013184 151 SHFSIVHWSSLSSKRTEV---LDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV----------RDNLLIAGGFQGELICKY 217 (448)
Q Consensus 151 ~~~~v~~w~~~~~~~~~~---~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~----------~~~~lvsg~~dg~i~vw~ 217 (448)
.+++|++|+..++..... ..+.||..+ |.++++ ++++|++|+.|++|++||
T Consensus 109 ~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~----------------v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 109 QDNTVRLIITKNETIITQHVLGGKSGHHNF----------------VNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp TTSCEEEEEEETTEEEEEEEECTTTSCSSC----------------EEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred CCCcEEEEECCCCccceeeeecccCCCCCc----------------eEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 478899999877654332 245677764 888887 578999999999999999
Q ss_pred cCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEe----------------------
Q 013184 218 LDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHF---------------------- 275 (448)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~---------------------- 275 (448)
+...... .....+ ...+.+++| +|++..+|++++.|++|++||+.+++.....
T Consensus 173 ~~~~~~~--~~~~~~-~~~v~~v~~--~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 173 LTDEGPI--LAGYPL-SSPGISVQF--RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp EETTEEE--EEEEEC-SSCEEEEEE--ETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred CCCCcee--eeecCC-CCCcEEEEE--CCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 9776533 223333 344556655 8988778999999999999999876543221
Q ss_pred ----ecCCCeeEEEEC-CCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEE------------------EcC--
Q 013184 276 ----SFPWPVNHTSLS-PDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASA------------------WHP-- 330 (448)
Q Consensus 276 ----~~~~~v~~~~~s-p~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~------------------~~p-- 330 (448)
.|...+.++.|+ |+++.|++++.|+.+++||+.+++....+..|...+..+. |+|
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRY 327 (393)
T ss_dssp ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSC
T ss_pred eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCC
Confidence 255678889886 7999999999999999999998877766666555444433 333
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 013184 331 DGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDA 392 (448)
Q Consensus 331 ~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~ 392 (448)
++.++++|+.||+|+|||+.. +.++..+..|..+|++++|+|+|++||+++.+| +.+|.+
T Consensus 328 ~~~~~~sgs~Dg~V~lwd~~~-~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 328 MDYFATAHSQHGLIQLINTYE-KDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TTEEEEEETTTTEEEEEETTC-TTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCEEEEEECCCCEEEEEECCC-CcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 344678888999999999987 677777888999999999999999999998776 666654
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=4.2e-24 Score=210.48 Aligned_cols=224 Identities=14% Similarity=0.104 Sum_probs=173.2
Q ss_pred CCEEEEEeCC------CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC---cEEEEecCCceE
Q 013184 201 DNLLIAGGFQ------GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC---GVRDFDMERFQL 271 (448)
Q Consensus 201 ~~~lvsg~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg---~v~iwd~~~~~~ 271 (448)
+..++.++.+ +.|++|+++..... .+. .+...+.++.| +|+|. .|++++.++ .|++||+.+++.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~---~l~-~~~~~v~~~~~--Spdg~-~la~~s~~~~~~~i~~~d~~tg~~ 215 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQF---VVH-RSPQPLMSPAW--SPDGS-KLAYVTFESGRSALVIQTLANGAV 215 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCE---EEE-EESSCEEEEEE--CTTSS-EEEEEECTTSSCEEEEEETTTCCE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCE---EEe-CCCCcceeeEE--cCCCC-EEEEEEecCCCcEEEEEECCCCcE
Confidence 5556665554 79999999754432 222 23445556655 99987 677777764 999999999988
Q ss_pred EEEeecCCCeeEEEECCCCCEEE-EEecCC--cEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeC-CC--cEE
Q 013184 272 SKHFSFPWPVNHTSLSPDGKLLV-IVGDNP--EGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ-DK--TCR 345 (448)
Q Consensus 272 ~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~--~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~-d~--~i~ 345 (448)
.....+...+.+++|+|+|+.|+ +++.++ .|++||+.+++. ..+..|...+.+++|+|+|++|++++. ++ .|.
T Consensus 216 ~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~ 294 (415)
T 2hqs_A 216 RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVY 294 (415)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEE
Confidence 76666888999999999999888 555554 499999998876 567778889999999999999988876 45 577
Q ss_pred EEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEE
Q 013184 346 VWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA---DFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFI 422 (448)
Q Consensus 346 iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~ 422 (448)
+||+.. + ....+..+...+.+++|+|+|++|++++.+ ..|++||+.+++.. .+..+. .+.+++|+|+|++|++
T Consensus 295 ~~d~~~-~-~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~ 370 (415)
T 2hqs_A 295 KVNING-G-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIY 370 (415)
T ss_dssp EEETTS-S-CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEE
T ss_pred EEECCC-C-CEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEE
Confidence 778764 3 345566677789999999999999988764 58999999987763 444454 8999999999999999
Q ss_pred EEecCCcceEEEEe
Q 013184 423 GVWDRTYGSLLQYN 436 (448)
Q Consensus 423 ~~~D~~~~~ll~~~ 436 (448)
++.|+....+..+.
T Consensus 371 ~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 371 SSSQGMGSVLNLVS 384 (415)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEcCCCccEEEEEE
Confidence 99887655666655
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=4.3e-23 Score=200.92 Aligned_cols=245 Identities=16% Similarity=0.073 Sum_probs=192.2
Q ss_pred ccceeeeCCCCeEEEe--cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEE-EEeC
Q 013184 135 LRNLVWSTSKHDVYLM--SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLI-AGGF 209 (448)
Q Consensus 135 ~r~l~~~~~~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lv-sg~~ 209 (448)
...+.+.+.+..++++ .++.|++|+..+++....+...+ .+.++++ ++++|+ +++.
T Consensus 34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-------------------~v~~~~~spdg~~l~~~~~~ 94 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-------------------SPQGVAVSPDGKQVYVTNMA 94 (391)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-------------------SEEEEEECTTSSEEEEEETT
T ss_pred cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-------------------CccceEECCCCCEEEEEECC
Confidence 4556677777777665 47889999998776655554331 3677877 677665 5556
Q ss_pred CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCC
Q 013184 210 QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPD 289 (448)
Q Consensus 210 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~ 289 (448)
++.|++|++.+..... .+ ..+ ..+..+.+ +|++..++++++.++.|++||+.+++.+..+.....+.+++|+|+
T Consensus 95 ~~~v~v~d~~~~~~~~--~~-~~~-~~~~~~~~--s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~d 168 (391)
T 1l0q_A 95 SSTLSVIDTTSNTVAG--TV-KTG-KSPLGLAL--SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPD 168 (391)
T ss_dssp TTEEEEEETTTTEEEE--EE-ECS-SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTT
T ss_pred CCEEEEEECCCCeEEE--EE-eCC-CCcceEEE--CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCC
Confidence 7999999998765432 22 222 23445544 899886668888899999999999999988887778899999999
Q ss_pred CCEE-EEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEe---CCCcEEEEEccCCCcceEEEccCCCC
Q 013184 290 GKLL-VIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGN---QDKTCRVWDVRNLSKSVAVLKGNLGA 365 (448)
Q Consensus 290 ~~~l-~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~ 365 (448)
++.+ ++++.++.|++||+++++.+..+. +...+.+++|+|+|++|++++ .++.|++||+++ .+.+..+..+. .
T Consensus 169 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~-~ 245 (391)
T 1l0q_A 169 GTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT-NKITARIPVGP-D 245 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT-TEEEEEEECCS-S
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC-CeEEEEEecCC-C
Confidence 9987 566788999999999998887776 566889999999999999888 689999999986 67777777665 4
Q ss_pred eEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeeeeecCcCc
Q 013184 366 IRSIRFTSDGNFM-AMAEPADFVHVYDAKNGFEKEQEIDFFGE 407 (448)
Q Consensus 366 v~~l~~sp~g~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~ 407 (448)
+.+++|+|+|++| ++++.++.|++||+.+++.+..+..+..+
T Consensus 246 ~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 246 PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 7899999999988 56678999999999999887777655443
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=3.4e-23 Score=204.46 Aligned_cols=226 Identities=13% Similarity=0.105 Sum_probs=181.1
Q ss_pred EEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEE--eecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 195 STLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSR--TTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 195 ~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
.++++ ++.++++++.+|.|++|++.+........ ....+...+.++.+ ++++. ++++++.|+.|++||+++++
T Consensus 126 ~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~--~~~~~-~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 126 KSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISI--PEHNE-LWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp CCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEE--GGGTE-EEEEEGGGTEEEEEETTTCC
T ss_pred eEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEE--cCCCE-EEEEECCCCEEEEEECCCce
Confidence 34555 66788888889999999998766432111 12245556666666 66664 88999999999999999999
Q ss_pred EEEEee-cCCCeeEEEECCCCCEEEEEe-cCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEe--------C
Q 013184 271 LSKHFS-FPWPVNHTSLSPDGKLLVIVG-DNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGN--------Q 340 (448)
Q Consensus 271 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~--------~ 340 (448)
.+..+. +...+.+++|+|+++.+++++ .++.|++||+++++.+..+..+ ..+.+++|+|+|++|++++ .
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 281 (433)
T 3bws_A 203 YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESG 281 (433)
T ss_dssp EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccC
Confidence 888887 788999999999999886555 7899999999999988887754 5689999999999999888 5
Q ss_pred CCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCe
Q 013184 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFM-AMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEA 419 (448)
Q Consensus 341 d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~ 419 (448)
|+.|++||+++ ++.+..+ .+...+.+++|+|+|++| ++++.++.|++||+.+++....+. +...+.+++|+|+|++
T Consensus 282 dg~i~~~d~~~-~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~ 358 (433)
T 3bws_A 282 GGRLGIYSMDK-EKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKY 358 (433)
T ss_dssp CEEEEEEETTT-TEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSE
T ss_pred CCeEEEEECCC-CcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCE
Confidence 88999999976 5555444 455688999999999755 556889999999999887766554 6788999999999999
Q ss_pred EEEEEecC
Q 013184 420 LFIGVWDR 427 (448)
Q Consensus 420 L~~~~~D~ 427 (448)
|++++.+.
T Consensus 359 l~~~~~~~ 366 (433)
T 3bws_A 359 LYVSCRGP 366 (433)
T ss_dssp EEEEECCC
T ss_pred EEEEecCC
Confidence 99988753
No 128
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=1.1e-22 Score=189.02 Aligned_cols=250 Identities=16% Similarity=0.109 Sum_probs=186.4
Q ss_pred CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEEcCC-CCceeEEE
Q 013184 152 HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKYLDQ-PGVSFCSR 228 (448)
Q Consensus 152 ~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~-~~~~~~~~ 228 (448)
++.|++|++.++....+.... ..|.++++ ++++|++++ ++.|.+|++.+ .... ..
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~-------------------~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~--~~ 78 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTP-------------------ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE--KV 78 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEES-------------------SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE--EC
T ss_pred ceeEEEEeCCCCceeeeccCC-------------------cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce--Ee
Confidence 467999998877665554322 13677777 888898886 88999999987 5432 11
Q ss_pred eecCCCCceeeEEEEeCCCCCeeEEEEe--CCCcEE--EEecCCceEEEEeecCCCeeEEEECCCCCEEE-EEecCCcEE
Q 013184 229 TTYDENAITNAVEIYNSPSGGIHFMASN--NDCGVR--DFDMERFQLSKHFSFPWPVNHTSLSPDGKLLV-IVGDNPEGI 303 (448)
Q Consensus 229 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s--~dg~v~--iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~i~ 303 (448)
...++...+..+.+ +|++. .|++++ .++..+ ++++.+++ ...+.....+.+++|+|+++.|+ +++.++.+.
T Consensus 79 ~~~~~~~~~~~~~~--spdg~-~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 154 (297)
T 2ojh_A 79 DTGFATICNNDHGI--SPDGA-LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFD 154 (297)
T ss_dssp CCTTCCCBCSCCEE--CTTSS-EEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEE
T ss_pred ccccccccccceEE--CCCCC-EEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceE
Confidence 22233345556666 89987 666666 334444 45555555 34444445589999999999887 677889888
Q ss_pred EEEC--CCCceeEeeecCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEE
Q 013184 304 LVDS--QTGKAIMPLCGHLDFSFASAWHPDGRIFATGN-QDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAM 380 (448)
Q Consensus 304 i~d~--~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s 380 (448)
||++ .+++ ...+..|...+.+++|+|+|++|++++ .++.++||++......+..+..+...+.+++|+|+|++|++
T Consensus 155 l~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 233 (297)
T 2ojh_A 155 IYSMDIDSGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVF 233 (297)
T ss_dssp EEEEETTTCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEE
T ss_pred EEEEECCCCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEE
Confidence 9885 4444 456667888999999999999888766 58999999997446677888888888999999999999998
Q ss_pred EeCC-----------CeEEEEECCCCcee--eeeecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 381 AEPA-----------DFVHVYDAKNGFEK--EQEIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 381 ~~~d-----------~~v~vwd~~~~~~~--~~~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
++.+ +.|++||+.+++.. .....|...+..++|+|+|++|++++.|..
T Consensus 234 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 294 (297)
T 2ojh_A 234 VSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFPV 294 (297)
T ss_dssp EEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECCC
T ss_pred EEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEeccC
Confidence 8765 56999999887653 334467888999999999999999988754
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=3.6e-22 Score=196.64 Aligned_cols=236 Identities=13% Similarity=0.097 Sum_probs=182.5
Q ss_pred CeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCC---eEEEEEcCCCCceeEE
Q 013184 153 FSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQG---ELICKYLDQPGVSFCS 227 (448)
Q Consensus 153 ~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg---~i~vw~~~~~~~~~~~ 227 (448)
+.|++||..+.....+.. |.. .|.++++ +++.|++++.++ .|++|++.+....
T Consensus 159 ~~i~i~d~~g~~~~~l~~---~~~----------------~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~--- 216 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHR---SPQ----------------PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--- 216 (415)
T ss_dssp EEEEEEETTSCSCEEEEE---ESS----------------CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---
T ss_pred ceEEEEcCCCCCCEEEeC---CCC----------------cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE---
Confidence 579999986544444332 222 3777777 889999999885 9999999876542
Q ss_pred EeecCCCCceeeEEEEeCCCCCeeEEEEeCCCc--EEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEec-CC--cE
Q 013184 228 RTTYDENAITNAVEIYNSPSGGIHFMASNNDCG--VRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGD-NP--EG 302 (448)
Q Consensus 228 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~--v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~--~i 302 (448)
.+. .+...+.++.| +|+|..++++++.++. |++||+.+++......+...+.+++|+|+|+.|++++. ++ .|
T Consensus 217 ~l~-~~~~~~~~~~~--spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 217 QVA-SFPRHNGAPAF--SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp EEE-CCSSCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred Eee-cCCCcccCEEE--cCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEE
Confidence 222 33445555555 9999866657776665 99999999887655558889999999999999998886 44 67
Q ss_pred EEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCC---CcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEE
Q 013184 303 ILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQD---KTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMA 379 (448)
Q Consensus 303 ~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 379 (448)
.+||+.+++. ..+..+...+.+++|+|+|++|++++.+ ..|.+||+.+ ++. ..+..+. .+.+++|+|+|++|+
T Consensus 294 ~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~-~~~-~~l~~~~-~~~~~~~spdg~~l~ 369 (415)
T 2hqs_A 294 YKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GGV-QVLSSTF-LDETPSLAPNGTMVI 369 (415)
T ss_dssp EEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-CCE-EECCCSS-SCEEEEECTTSSEEE
T ss_pred EEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC-CCE-EEecCCC-CcCCeEEcCCCCEEE
Confidence 7889988764 4455677889999999999999988764 5899999975 443 4566554 899999999999999
Q ss_pred EEeCCC---eEEEEECCCCceeeeeecCcCceEEEEEccCCC
Q 013184 380 MAEPAD---FVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTE 418 (448)
Q Consensus 380 s~~~d~---~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~ 418 (448)
+++.++ .|++||+. +.....+..|.+.|.+++|+|...
T Consensus 370 ~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 370 YSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred EEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 988777 89999986 556677888999999999999643
No 130
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=2.9e-21 Score=184.92 Aligned_cols=268 Identities=13% Similarity=0.103 Sum_probs=201.2
Q ss_pred cceeeeCCCCeEEEec--------CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCC-EEEE
Q 013184 136 RNLVWSTSKHDVYLMS--------HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDN-LLIA 206 (448)
Q Consensus 136 r~l~~~~~~~~v~~~~--------~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~-~lvs 206 (448)
..+.+.+....+|+++ ++.|.+||..+++....+...+. | .-.+++.+++ ++++
T Consensus 44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~---------------~~~~~s~dg~~l~v~ 106 (353)
T 3vgz_A 44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK--P---------------FGATINNTTQTLWFG 106 (353)
T ss_dssp EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC--C---------------CSEEEETTTTEEEEE
T ss_pred cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC--c---------------ceEEECCCCCEEEEE
Confidence 3456778888888876 55799999988776666554321 1 0123444777 4555
Q ss_pred EeCCCeEEEEEcCCCCceeEEEeecCCCC--------ceeeEEEEeCCCCCeeEEEE-eCCCcEEEEecCCceEEEEee-
Q 013184 207 GGFQGELICKYLDQPGVSFCSRTTYDENA--------ITNAVEIYNSPSGGIHFMAS-NNDCGVRDFDMERFQLSKHFS- 276 (448)
Q Consensus 207 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~- 276 (448)
+..++.|.+|++.+......... +... .+..+ .++|+++.+++++ +.++.|.+||+.+++.+..+.
T Consensus 107 ~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~ 182 (353)
T 3vgz_A 107 NTVNSAVTAIDAKTGEVKGRLVL--DDRKRTEEVRPLQPREL--VADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN 182 (353)
T ss_dssp ETTTTEEEEEETTTCCEEEEEES--CCCCCCSSCCCCEEEEE--EEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC
T ss_pred ecCCCEEEEEeCCCCeeEEEEec--CCCccccccCCCCCceE--EECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC
Confidence 66689999999987765432222 2111 13344 4489988555555 357899999999999998888
Q ss_pred cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeec----CCCcEEEEEEcCCCCEEEEEeC-CCcEEEEEccC
Q 013184 277 FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCG----HLDFSFASAWHPDGRIFATGNQ-DKTCRVWDVRN 351 (448)
Q Consensus 277 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~----h~~~v~~~~~~p~g~~l~s~~~-d~~i~iwd~~~ 351 (448)
+...+.+++|+|+++.+++++.++.|.+||..+++.+..+.. +...+..++|+|+|+++++++. ++.|.+||+.+
T Consensus 183 ~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 262 (353)
T 3vgz_A 183 TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN 262 (353)
T ss_dssp CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 666689999999999999999999999999999998877764 5667889999999997777665 48999999976
Q ss_pred CCcceEEEccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 352 LSKSVAVLKGNLGAIRSIRFTSDGNFMAMAE-PADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 352 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
++.+..+.... ...++|+|+|++|+++. .++.|.+||+.+++.+..+.. ...+.+++|+|+|++|+++..++.
T Consensus 263 -~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~ 336 (353)
T 3vgz_A 263 -GNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT-PTHPNSLALSADGKTLYVSVKQKS 336 (353)
T ss_dssp -CCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC-CSEEEEEEECTTSCEEEEEEECCC
T ss_pred -CcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec-CCCCCeEEEcCCCCEEEEEEcccc
Confidence 66666666443 25799999999776666 689999999999887766554 457899999999999998877643
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=3.4e-21 Score=183.33 Aligned_cols=259 Identities=15% Similarity=0.180 Sum_probs=175.8
Q ss_pred eEEEe--cCCeEEEEecC-CCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCC-CeEEEEEcC
Q 013184 146 DVYLM--SHFSIVHWSSL-SSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQ-GELICKYLD 219 (448)
Q Consensus 146 ~v~~~--~~~~v~~w~~~-~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~d-g~i~vw~~~ 219 (448)
.+|++ .++.|.+|++. ++....+.... +.. .+.++++ ++++|++++.+ +.|.+|+++
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~----------------~~~~~~~spdg~~l~~~~~~~~~v~~~~~~ 68 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVVD-VPG----------------QVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 68 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSS----------------CCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeEe-cCC----------------CCceEEECCCCCEEEEeecCCCeEEEEEec
Confidence 45554 36789999974 33333332222 111 2344555 88888888876 999999998
Q ss_pred --CCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEec---CCceEEEEeecCCCeeEEEECCCCCEEE
Q 013184 220 --QPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM---ERFQLSKHFSFPWPVNHTSLSPDGKLLV 294 (448)
Q Consensus 220 --~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 294 (448)
.........+.. .. .+..+.+ +|++..+++++..++.|.+|++ ...+....+.....+.+++|+|+++.++
T Consensus 69 ~~~~~~~~~~~~~~-~~-~~~~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 144 (343)
T 1ri6_A 69 PDDGALTFAAESAL-PG-SLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLW 144 (343)
T ss_dssp TTTCCEEEEEEEEC-SS-CCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEE
T ss_pred CCCCceeecccccc-CC-CCcEEEE--cCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEE
Confidence 333322222222 22 3445555 8998855555666899999999 5555666666666799999999999888
Q ss_pred EEe-cCCcEEEEECCC-CceeE----eeec-CCCcEEEEEEcCCCCEEEEEe-CCCcEEEEEccCC-Ccc--eEEEc---
Q 013184 295 IVG-DNPEGILVDSQT-GKAIM----PLCG-HLDFSFASAWHPDGRIFATGN-QDKTCRVWDVRNL-SKS--VAVLK--- 360 (448)
Q Consensus 295 ~~~-~d~~i~i~d~~~-~~~~~----~l~~-h~~~v~~~~~~p~g~~l~s~~-~d~~i~iwd~~~~-~~~--~~~~~--- 360 (448)
+++ .++.|.+||+.+ ++... .+.. ....+..++|+|+|+++++++ .++.|++|++... +.. ...+.
T Consensus 145 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~ 224 (343)
T 1ri6_A 145 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP 224 (343)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSC
T ss_pred EecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccC
Confidence 887 889999999987 65432 2232 345788999999999776555 7899999999531 221 22222
Q ss_pred cC---CCCeEEEEEcCCCCEEEEEe-CCCeEEEEECC--CC--ceeeeeecCcCceEEEEEccCCCeEEEEEec
Q 013184 361 GN---LGAIRSIRFTSDGNFMAMAE-PADFVHVYDAK--NG--FEKEQEIDFFGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 361 ~~---~~~v~~l~~sp~g~~l~s~~-~d~~v~vwd~~--~~--~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D 426 (448)
.. ...+..++|+|+|++|+++. .++.|.+|++. ++ +.+..+..+ +.+.+++|+|+|++|++++.+
T Consensus 225 ~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~ 297 (343)
T 1ri6_A 225 ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE-TQPRGFNVDHSGKYLIAAGQK 297 (343)
T ss_dssp TTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS-SSCCCEEECTTSSEEEEECTT
T ss_pred ccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC-CccceEEECCCCCEEEEecCC
Confidence 11 23566899999999887554 78999999998 33 233333333 348999999999999998753
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=4e-21 Score=195.39 Aligned_cols=268 Identities=13% Similarity=0.110 Sum_probs=198.6
Q ss_pred ceeeeCCCCeEEEec-CCeEEEEec--CCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe------cCCEEEEE
Q 013184 137 NLVWSTSKHDVYLMS-HFSIVHWSS--LSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV------RDNLLIAG 207 (448)
Q Consensus 137 ~l~~~~~~~~v~~~~-~~~v~~w~~--~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~------~~~~lvsg 207 (448)
.+.+.+++..+|.++ +++|.+||+ .+.+....+.. +. ....+++ ++++|+++
T Consensus 183 ~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~--g~-----------------~p~~va~sp~~~~dg~~l~v~ 243 (543)
T 1nir_A 183 ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI--GI-----------------EARSVESSKFKGYEDRYTIAG 243 (543)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC--CS-----------------EEEEEEECCSTTCTTTEEEEE
T ss_pred eEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec--CC-----------------CcceEEeCCCcCCCCCEEEEE
Confidence 344677788888875 678999998 55443333321 11 2344444 68888888
Q ss_pred e-CCCeEEEEEcCCCCceeEEEeec--------CCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEE--Eee
Q 013184 208 G-FQGELICKYLDQPGVSFCSRTTY--------DENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSK--HFS 276 (448)
Q Consensus 208 ~-~dg~i~vw~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~--~~~ 276 (448)
+ .+++|.+||..+........... +....+ ..+.++|++...+++...++.|.+||+.+.+.+. .+.
T Consensus 244 ~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v--~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~ 321 (543)
T 1nir_A 244 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV--AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG 321 (543)
T ss_dssp EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE--EEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE
T ss_pred EccCCeEEEEeccccccceeecccCcccCccccccCCce--EEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec
Confidence 8 48999999988766443322211 112123 3445589888888888899999999998765433 455
Q ss_pred cCCCeeEEEECCCCCEEEEEe-cCCcEEEEECCCCceeEeeec----CCCcEEEEEEcCC-CCEEEEEe-CCCcEEEEEc
Q 013184 277 FPWPVNHTSLSPDGKLLVIVG-DNPEGILVDSQTGKAIMPLCG----HLDFSFASAWHPD-GRIFATGN-QDKTCRVWDV 349 (448)
Q Consensus 277 ~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~~~~l~~----h~~~v~~~~~~p~-g~~l~s~~-~d~~i~iwd~ 349 (448)
+...+..+.|+|+|+++++++ .++.|.+||+.+++++..+.. |......+ ++|+ |.++++++ .|++|.+||+
T Consensus 322 ~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~ 400 (543)
T 1nir_A 322 AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGT 400 (543)
T ss_dssp CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEe
Confidence 667788999999999877665 588999999999999888874 65443333 4776 66777775 5899999999
Q ss_pred cCC------CcceEEEccCCCCeEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCceeeee---------ecCcCc
Q 013184 350 RNL------SKSVAVLKGNLGAIRSIRFTSDGNFMAMAEP-------ADFVHVYDAKNGFEKEQE---------IDFFGE 407 (448)
Q Consensus 350 ~~~------~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~-------d~~v~vwd~~~~~~~~~~---------~~~~~~ 407 (448)
... .++++++..|.+.+..++|+|+|++|++++. +++|.|||+.+++..... ..+...
T Consensus 401 ~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~ 480 (543)
T 1nir_A 401 DPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKR 480 (543)
T ss_dssp CTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCE
T ss_pred CCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCc
Confidence 752 5788999999888899999999999999872 679999999998876333 245678
Q ss_pred eEEEEEccCCCeEEEEEec
Q 013184 408 ISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 408 v~~~~fspdg~~L~~~~~D 426 (448)
+..+.|+|+|+.|+++.|.
T Consensus 481 ~~~~~~~~~g~~~~~s~~~ 499 (543)
T 1nir_A 481 VVQPEYNKRGDEVWFSVWN 499 (543)
T ss_dssp EEEEEECSSSSEEEEEEEC
T ss_pred eEeccCCCCCCEEEEEeec
Confidence 9999999999999999773
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=2.2e-20 Score=177.42 Aligned_cols=264 Identities=11% Similarity=0.125 Sum_probs=183.1
Q ss_pred eeeCCCCeEEEe--cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeC-CCeE
Q 013184 139 VWSTSKHDVYLM--SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGF-QGEL 213 (448)
Q Consensus 139 ~~~~~~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~-dg~i 213 (448)
++.+....+|++ .++.|.+||..+++....+... .. .+ .+++ ++++|++++. ++.|
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~----------------~~-~~~~s~dg~~l~~~~~~~~~i 64 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLG--YD----------------FV-DTAITSDCSNVVVTSDFCQTL 64 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECC--CC----------------EE-EEEECSSSCEEEEEESTTCEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEcc--CC----------------cc-eEEEcCCCCEEEEEeCCCCeE
Confidence 444556666665 4678999999887776665432 11 23 5555 7776665554 8999
Q ss_pred EEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC-C--cEEEEecCCceEEEEeecCCCeeEEEECCCC
Q 013184 214 ICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND-C--GVRDFDMERFQLSKHFSFPWPVNHTSLSPDG 290 (448)
Q Consensus 214 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d-g--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~ 290 (448)
.+|++.+..... .... .+.....++.+ +|+|. +++++..+ + .|++||+.+++.+..+.....+.+++|+|+|
T Consensus 65 ~~~d~~~~~~~~-~~~~-~~~~~~~~~~~--s~dg~-~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg 139 (331)
T 3u4y_A 65 VQIETQLEPPKV-VAIQ-EGQSSMADVDI--TPDDQ-FAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNG 139 (331)
T ss_dssp EEEECSSSSCEE-EEEE-ECSSCCCCEEE--CTTSS-EEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTS
T ss_pred EEEECCCCceeE-Eecc-cCCCCccceEE--CCCCC-EEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCC
Confidence 999998776521 2222 23333333555 89987 45555544 3 8999999999999888877778999999999
Q ss_pred CEEEEE-ecCCc-EEEEECCCCcee----EeeecCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEEccCCCcc---eEEEc
Q 013184 291 KLLVIV-GDNPE-GILVDSQTGKAI----MPLCGHLDFSFASAWHPDGRIFATGN-QDKTCRVWDVRNLSKS---VAVLK 360 (448)
Q Consensus 291 ~~l~~~-~~d~~-i~i~d~~~~~~~----~~l~~h~~~v~~~~~~p~g~~l~s~~-~d~~i~iwd~~~~~~~---~~~~~ 360 (448)
++++++ ..++. |.+|++.....+ .........+..++|+|+|++++.++ .++.|++||+.+ ++. +..+.
T Consensus 140 ~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~-~~~~~~~~~~~ 218 (331)
T 3u4y_A 140 NGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN-PENITLLNAVG 218 (331)
T ss_dssp SCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS-TTSCEEEEEEE
T ss_pred CEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC-Ccccceeeecc
Confidence 866555 55578 999998754332 11223445678999999999665554 688999999976 565 66666
Q ss_pred cCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCce--eeeeecC----cC---ceEEEEEccCCCeEEEEEecCC
Q 013184 361 GNLGAIRSIRFTSDGNFMAMAE-PADFVHVYDAKNGFE--KEQEIDF----FG---EISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 361 ~~~~~v~~l~~sp~g~~l~s~~-~d~~v~vwd~~~~~~--~~~~~~~----~~---~v~~~~fspdg~~L~~~~~D~~ 428 (448)
.+ ..+..++|+|+|++|+++. .++.|.+||+.+++. +..+..+ .. ...+++|+|+|++|++++.+..
T Consensus 219 ~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 295 (331)
T 3u4y_A 219 TN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR 295 (331)
T ss_dssp CS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTT
T ss_pred CC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCC
Confidence 44 5678899999999887665 467899999998876 2222221 11 2356899999999998887653
No 134
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2.3e-20 Score=196.11 Aligned_cols=275 Identities=13% Similarity=0.082 Sum_probs=195.0
Q ss_pred cccceeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeE
Q 013184 134 QLRNLVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGEL 213 (448)
Q Consensus 134 q~r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i 213 (448)
.+..+.++++ ..++++.++.|++|++.++....+....+... -.+++.+|+.|+++ .++.|
T Consensus 83 ~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~-----------------~~~~SpdG~~la~~-~~~~i 143 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYLFDTNEETA-----------------SLDFSPVGDRVAYV-RNHNL 143 (706)
T ss_dssp CCEEEEETTT-TEEEEEETTEEEEEETTTTEEEEEECCTTCCT-----------------TCEECTTSSEEEEE-ETTEE
T ss_pred CceeEEECCC-CeEEEEECCEEEEEECCCCceEEccCCccccc-----------------CCcCCCCCCEEEEE-ECCeE
Confidence 3455667777 77888888999999987765555443221111 12344588998885 78999
Q ss_pred EEEEcCC-----CCceeEEEeecCCCC-c-------------eeeEEEEeCCCCCeeEEEEe------------------
Q 013184 214 ICKYLDQ-----PGVSFCSRTTYDENA-I-------------TNAVEIYNSPSGGIHFMASN------------------ 256 (448)
Q Consensus 214 ~vw~~~~-----~~~~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~l~s~s------------------ 256 (448)
.+|++.+ .... .+...... + +..+.| +|+|. .|++++
T Consensus 144 ~v~~~~~~~~~~g~~~---~~~~~~~~~~~~g~~~~~ee~~~~~~~~~--SpDg~-~la~~~~d~~~~~~~~~~~~~~~~ 217 (706)
T 2z3z_A 144 YIARGGKLGEGMSRAI---AVTIDGTETLVYGQAVHQREFGIEKGTFW--SPKGS-CLAFYRMDQSMVKPTPIVDYHPLE 217 (706)
T ss_dssp EEEECBCTTSCCCCCE---ESCSCCBTTEEESSCCGGGCTTCCCSEEE--CTTSS-EEEEEEEECTTSCCEEEEECCSSS
T ss_pred EEEecCcccccCCCcE---EeccCCCCCeEcccchhhhhcCCCceEEE--CCCCC-EEEEEEECCCCCceEEeeccCCCC
Confidence 9999987 5432 22222211 1 245544 99998 566655
Q ss_pred ---------------CCCcEEEEecCCceEEEEee---cCCCeeEEEECCCCCEEEEEecCC-----cEEEEECCCCcee
Q 013184 257 ---------------NDCGVRDFDMERFQLSKHFS---FPWPVNHTSLSPDGKLLVIVGDNP-----EGILVDSQTGKAI 313 (448)
Q Consensus 257 ---------------~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~-----~i~i~d~~~~~~~ 313 (448)
.+..|++||+.+++...... +...+.+++|+|+|+.|++++.++ .|.+||+.+++..
T Consensus 218 ~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~ 297 (706)
T 2z3z_A 218 AESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFV 297 (706)
T ss_dssp CEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEE
T ss_pred CceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCcee
Confidence 45789999999988765542 456789999999999999988775 8999999998444
Q ss_pred Eeee--cCCC---cEEEEEEcC--CCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEE-EEEcCCCCEEEEEeCC-
Q 013184 314 MPLC--GHLD---FSFASAWHP--DGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRS-IRFTSDGNFMAMAEPA- 384 (448)
Q Consensus 314 ~~l~--~h~~---~v~~~~~~p--~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~-l~~sp~g~~l~s~~~d- 384 (448)
..+. .+.. .+.+++|+| +|+++++++.++.++||.+...+..+..+..+...+.. ++|+|+|+.|+.++.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~ 377 (706)
T 2z3z_A 298 RTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEA 377 (706)
T ss_dssp EEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSS
T ss_pred eEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCC
Confidence 3332 1222 235789999 99999999999999999987446777888888878877 7999999988776554
Q ss_pred C----eEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCc-ceEEEE
Q 013184 385 D----FVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTY-GSLLQY 435 (448)
Q Consensus 385 ~----~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~-~~ll~~ 435 (448)
+ .|+.||+.++. ...+ .+...+.+++|+|||++|+.+..+... +.+..+
T Consensus 378 ~~~~~~l~~~d~~~~~-~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~ 431 (706)
T 2z3z_A 378 SPLERHFYCIDIKGGK-TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVT 431 (706)
T ss_dssp CTTCBEEEEEETTCCC-CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEE
T ss_pred CCceEEEEEEEcCCCC-ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEE
Confidence 3 67778877765 2233 366779999999999999887655432 334444
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=9.5e-21 Score=200.13 Aligned_cols=289 Identities=12% Similarity=0.077 Sum_probs=199.5
Q ss_pred ccceeeeCCCCeEEEec--CC-----eEEEEecCCCceeEEEecCCCCCCCCC---CCCCcccC---Cc-ceeeEEEEe-
Q 013184 135 LRNLVWSTSKHDVYLMS--HF-----SIVHWSSLSSKRTEVLDVSGHVAPCEK---HPGNLLEG---FT-QTQVSTLAV- 199 (448)
Q Consensus 135 ~r~l~~~~~~~~v~~~~--~~-----~v~~w~~~~~~~~~~~~~~gh~~p~~~---~~~~~~~~---~~-~~~i~~l~~- 199 (448)
...+.|++++..+++++ ++ .|++|++.+++...++...++. |... ........ +. ...|.++++
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL-PGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCCCEEC
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc-cccccccchhhhhhhhhhhccccCcceeEEC
Confidence 45667888888888875 45 7999999888777776544322 0000 00000000 00 023555555
Q ss_pred -cCCEEEEEeCCCeEEEEEcCCC---CceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEe
Q 013184 200 -RDNLLIAGGFQGELICKYLDQP---GVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHF 275 (448)
Q Consensus 200 -~~~~lvsg~~dg~i~vw~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 275 (448)
++++|++++. +.|.+|++.+. ... .+. .+...+..+.| +|+|+ .|+.++ ++.|++||+.+++.....
T Consensus 118 pDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~-~~~~~~~~~~~--SPDG~-~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 118 PDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLT-HGEGFATDAKL--SPKGG-FVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp TTSSEEEEEET-TEEEEEESSSCSTTSCC---BCC-CSSSCEEEEEE--CTTSS-EEEEEE-TTEEEEEETTTTEEEECC
T ss_pred CCCCEEEEEeC-CcEEEEECCCCCcceEE---Ecc-cCCcccccccC--CCCCC-EEEEEe-CCcEEEEecCCCCEEEec
Confidence 8999999886 99999999876 322 222 23344455554 99997 566665 468999999998876655
Q ss_pred ec-CCC----------------eeEEEECCCCCEEEEEecCC---------------------------------cEEEE
Q 013184 276 SF-PWP----------------VNHTSLSPDGKLLVIVGDNP---------------------------------EGILV 305 (448)
Q Consensus 276 ~~-~~~----------------v~~~~~sp~~~~l~~~~~d~---------------------------------~i~i~ 305 (448)
.. ... +.+++|||+|+.|++++.++ .|.+|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 42 221 47899999999999987665 78899
Q ss_pred ECCC-CceeEeee--cCCCcEEEEEEcCCCCEEEEEeC-----CCcEEEEEccCCCcceEEEccCCC----CeEEEEEcC
Q 013184 306 DSQT-GKAIMPLC--GHLDFSFASAWHPDGRIFATGNQ-----DKTCRVWDVRNLSKSVAVLKGNLG----AIRSIRFTS 373 (448)
Q Consensus 306 d~~~-~~~~~~l~--~h~~~v~~~~~~p~g~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~----~v~~l~~sp 373 (448)
|+.+ ++...... .|...+..++| |||++|++++. +..|++||+.+ ++....+..+.. .+..++|+|
T Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS-NQQRVLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT-CCEEEEEEEECSSCCCCCSCCEECT
T ss_pred ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC-CceEEEEEcCCCCcCCcCCceEECC
Confidence 9988 87654433 47788999999 99999987754 56799999976 566555555443 456899999
Q ss_pred CCCEEEEEeCCCeEEEEECC-CCceeeeeecCcCceEEE-EEccCCCeEEEEEecCC--cceEEEEe
Q 013184 374 DGNFMAMAEPADFVHVYDAK-NGFEKEQEIDFFGEISGM-TFSPDTEALFIGVWDRT--YGSLLQYN 436 (448)
Q Consensus 374 ~g~~l~s~~~d~~v~vwd~~-~~~~~~~~~~~~~~v~~~-~fspdg~~L~~~~~D~~--~~~ll~~~ 436 (448)
+|+++++++.++.++||.+. .+. ...+..+...|.++ +|+|+|+.|+..+.+.. ...++...
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 99999999999877777665 344 66677777788887 59999998876665543 33454443
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=1.6e-20 Score=197.82 Aligned_cols=278 Identities=11% Similarity=0.059 Sum_probs=189.4
Q ss_pred cceeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCC---
Q 013184 136 RNLVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQ--- 210 (448)
Q Consensus 136 r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~d--- 210 (448)
..+.|++.+..++...+++|++|++.+++...++... ... ...|.++++ +|++|++++.+
T Consensus 20 ~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~--~~~-------------~~~v~~~~~SpDg~~l~~~~~~~~~ 84 (723)
T 1xfd_A 20 PEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGK--KIE-------------SLRAIRYEISPDREYALFSYNVEPI 84 (723)
T ss_dssp CCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTT--TTT-------------TTTCSEEEECTTSSEEEEEESCCCC
T ss_pred cccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccc--ccc-------------ccccceEEECCCCCEEEEEecCccc
Confidence 4556777777555556778999999887766665332 110 002556655 99999999764
Q ss_pred ------CeEEEEEcCCCCceeEEEeec--CCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCe
Q 013184 211 ------GELICKYLDQPGVSFCSRTTY--DENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPV 281 (448)
Q Consensus 211 ------g~i~vw~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v 281 (448)
+.|.+|++.+.... .+.. .+...+..+.| +|+|+ .|+.++. +.|++|++.+++...... +...+
T Consensus 85 ~~~~~~~~i~~~d~~~~~~~---~l~~~~~~~~~~~~~~~--SPdG~-~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~ 157 (723)
T 1xfd_A 85 YQHSYTGYYVLSKIPHGDPQ---SLDPPEVSNAKLQYAGW--GPKGQ-QLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV 157 (723)
T ss_dssp SSSCCCSEEEEEESSSCCCE---ECCCTTCCSCCCSBCCB--CSSTT-CEEEEET-TEEEEESSSSSCCEEEECCCBTTT
T ss_pred eeecceeeEEEEECCCCceE---eccCCccccccccccEE--CCCCC-EEEEEEC-CeEEEEECCCCceEEEecCCCCCc
Confidence 78889999877642 2221 22222344444 99997 5666665 799999999888766555 23333
Q ss_pred ------------------eEEEECCCCCEEEEEecCC----------------------------------cEEEEECCC
Q 013184 282 ------------------NHTSLSPDGKLLVIVGDNP----------------------------------EGILVDSQT 309 (448)
Q Consensus 282 ------------------~~~~~sp~~~~l~~~~~d~----------------------------------~i~i~d~~~ 309 (448)
.+++|||+|+.|++++.++ .|++||+.+
T Consensus 158 ~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~ 237 (723)
T 1xfd_A 158 IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG 237 (723)
T ss_dssp EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS
T ss_pred eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC
Confidence 7899999999999987543 799999999
Q ss_pred CceeEeeecC------CCcEEEEEEcCCCCEEEEEeC----CCcEEEEEccCCCcceEEEcc-CCCCe----EEEEEcCC
Q 013184 310 GKAIMPLCGH------LDFSFASAWHPDGRIFATGNQ----DKTCRVWDVRNLSKSVAVLKG-NLGAI----RSIRFTSD 374 (448)
Q Consensus 310 ~~~~~~l~~h------~~~v~~~~~~p~g~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~-~~~~v----~~l~~sp~ 374 (448)
++....+..+ ...+..++|+|||++|++.+. +..|++||+.+ +++...+.. +.+.+ ..++|+||
T Consensus 238 ~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~spd 316 (723)
T 1xfd_A 238 PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLHRQNEEPVFSKD 316 (723)
T ss_dssp SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCCCCCCCCEECTT
T ss_pred CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-CcceEEEEeccCCEEeccCCCceEcCC
Confidence 8865666654 567899999999998877643 35799999976 555554443 33443 37899999
Q ss_pred CCEEEE--EeCCC------eEEEEE-CCCCce--eeeeecCcCceEE-EEEccCCCeEEEEEecC--CcceEEEEe
Q 013184 375 GNFMAM--AEPAD------FVHVYD-AKNGFE--KEQEIDFFGEISG-MTFSPDTEALFIGVWDR--TYGSLLQYN 436 (448)
Q Consensus 375 g~~l~s--~~~d~------~v~vwd-~~~~~~--~~~~~~~~~~v~~-~~fspdg~~L~~~~~D~--~~~~ll~~~ 436 (448)
|+.|+. +..++ .|++|| ...+.. ..++..+...+.. ++|+|||+.|+..+.+. ....++...
T Consensus 317 g~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 317 GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp SCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred CCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 997775 44566 577777 344431 4444443444554 69999999998887764 334555553
No 137
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=6.8e-20 Score=173.88 Aligned_cols=215 Identities=15% Similarity=0.095 Sum_probs=165.3
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCC-ceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCC-
Q 013184 202 NLLIAGGFQGELICKYLDQPGVSFCSRTTYDENA-ITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPW- 279 (448)
Q Consensus 202 ~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~- 279 (448)
++|++++.++.|.+|++.+.... ..+...... .+..+.+ +|++..++++++.++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~ 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVD--KVITIADAGPTPMVPMV--APGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEE--EEEECTTCTTCCCCEEE--CTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred cEEEEcCCCCeEEEEECCCCcEE--EEEEcCCCCCCccceEE--cCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc
Confidence 57899999999999999876543 222222211 2445555 89998677778788999999999999888777543
Q ss_pred -----CeeEEEECCCCCEEEEEe------------cCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCC
Q 013184 280 -----PVNHTSLSPDGKLLVIVG------------DNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDK 342 (448)
Q Consensus 280 -----~v~~~~~sp~~~~l~~~~------------~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~ 342 (448)
.+.+++|+|+|+.++++. .++.|.+||+.+++.+..+.. ...+.+++|+|+|++|+++ ++
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~ 154 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GR 154 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SS
T ss_pred ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CC
Confidence 788999999999998886 578999999999988877764 4456788999999988887 57
Q ss_pred cEEEEEccCCCcceEEEcc-------------------------------------------------------------
Q 013184 343 TCRVWDVRNLSKSVAVLKG------------------------------------------------------------- 361 (448)
Q Consensus 343 ~i~iwd~~~~~~~~~~~~~------------------------------------------------------------- 361 (448)
.|.+||+.+ ++.+..+..
T Consensus 155 ~i~~~d~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 233 (337)
T 1pby_B 155 DLHVMDPEA-GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM 233 (337)
T ss_dssp SEEEEETTT-TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE
T ss_pred eEEEEECCC-CcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE
Confidence 899999865 333332221
Q ss_pred -----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecC
Q 013184 362 -----NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 362 -----~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
+...+.+++|+|+|++|+++ ++.|++||+.+++.+..+.. ...+.+++|+|+|++|++++.++
T Consensus 234 ~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~ 301 (337)
T 1pby_B 234 REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALG 301 (337)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSS
T ss_pred eecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCC
Confidence 11234569999999999988 68999999999877665543 45688999999999999986553
No 138
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.87 E-value=1.5e-19 Score=183.78 Aligned_cols=252 Identities=14% Similarity=0.107 Sum_probs=185.3
Q ss_pred CeEEEe--cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEEc--
Q 013184 145 HDVYLM--SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKYL-- 218 (448)
Q Consensus 145 ~~v~~~--~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~~-- 218 (448)
+.+|++ .+++|.+||..+++....+... + .+.++++ ++++|++++.++.|.+|++
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g-~------------------~~~~v~~spdg~~l~v~~~d~~V~v~D~~~ 209 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTG-Y------------------AVHISRMSASGRYLLVIGRDARIDMIDLWA 209 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECS-T------------------TEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecC-c------------------ccceEEECCCCCEEEEECCCCeEEEEECcC
Confidence 345554 3678999999887665555432 1 1344544 9999999999999999999
Q ss_pred CCCCceeEEEeecCCCCceeeEEEEeCC----CCCeeEEEEeCCCcEEEEecCCceEEEEeec-----------C-CCee
Q 013184 219 DQPGVSFCSRTTYDENAITNAVEIYNSP----SGGIHFMASNNDCGVRDFDMERFQLSKHFSF-----------P-WPVN 282 (448)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-----------~-~~v~ 282 (448)
.+... ...+. ....+..+.+ +| +|+.++++...+++|.+||..+++++..+.. + ..+.
T Consensus 210 ~t~~~--~~~i~--~g~~p~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~ 283 (543)
T 1nir_A 210 KEPTK--VAEIK--IGIEARSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVA 283 (543)
T ss_dssp SSCEE--EEEEE--CCSEEEEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEE
T ss_pred CCCcE--EEEEe--cCCCcceEEe--CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceE
Confidence 44332 22332 2333455555 89 8884444444689999999999998887763 1 2688
Q ss_pred EEEECCCCCEE-EEEecCCcEEEEECCCCceeE--eeecCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEEccCCCcceEE
Q 013184 283 HTSLSPDGKLL-VIVGDNPEGILVDSQTGKAIM--PLCGHLDFSFASAWHPDGRIFATGN-QDKTCRVWDVRNLSKSVAV 358 (448)
Q Consensus 283 ~~~~sp~~~~l-~~~~~d~~i~i~d~~~~~~~~--~l~~h~~~v~~~~~~p~g~~l~s~~-~d~~i~iwd~~~~~~~~~~ 358 (448)
.+.++|++..+ ++...++.|.+||..+++.+. .+. +...+..++|+|+|++|++++ .+++|.+||+.+ ++++..
T Consensus 284 ~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t-g~l~~~ 361 (543)
T 1nir_A 284 AIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD-RRLSAL 361 (543)
T ss_dssp EEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEE
T ss_pred EEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCC-CeEEEe
Confidence 99999976654 555678999999998876544 443 566678899999999877665 588999999987 777777
Q ss_pred Ecc----CCCCeEEEEEcCC-CCEEEEEe-CCCeEEEEECCC-------CceeeeeecCcCceEEEEEccCCCeEEEEE
Q 013184 359 LKG----NLGAIRSIRFTSD-GNFMAMAE-PADFVHVYDAKN-------GFEKEQEIDFFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 359 ~~~----~~~~v~~l~~sp~-g~~l~s~~-~d~~v~vwd~~~-------~~~~~~~~~~~~~v~~~~fspdg~~L~~~~ 424 (448)
+.. |.+....+ ++|+ |++++++. .+++|.|||+.+ ++.+..+..|.+.+..++|+|+|++|++++
T Consensus 362 i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 362 VDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp EECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred eccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 764 54433333 4787 66667765 579999999988 788888888888889999999999999986
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=2.2e-20 Score=173.42 Aligned_cols=213 Identities=17% Similarity=0.205 Sum_probs=162.3
Q ss_pred EEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC-ceEEEEee-c-CCCee
Q 013184 206 AGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER-FQLSKHFS-F-PWPVN 282 (448)
Q Consensus 206 sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~-~-~~~v~ 282 (448)
.++.++.|.+|++.+.... .+.. +...+.++.+ +|++. +|++++ ++.|++||+.+ ++...... + ...+.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~---~~~~-~~~~v~~~~~--spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR---VVWQ-TPELFEAPNW--SPDGK-YLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNN 88 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE---EEEE-ESSCCEEEEE--CTTSS-EEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred CCCcceeEEEEeCCCCcee---eecc-CCcceEeeEE--CCCCC-EEEEEc-CCeEEEEeCCCCCCceEecccccccccc
Confidence 4568899999999876533 2222 3445556665 89987 566665 78999999998 87766665 3 36789
Q ss_pred EEEECCCCCEEEEEec--C--CcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEE-EEeCCCcEEEEEccCCCcceE
Q 013184 283 HTSLSPDGKLLVIVGD--N--PEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFA-TGNQDKTCRVWDVRNLSKSVA 357 (448)
Q Consensus 283 ~~~~sp~~~~l~~~~~--d--~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~-s~~~d~~i~iwd~~~~~~~~~ 357 (448)
+++|+|++++|++++. + ..|.+++..+++ ...+..+ ..+..++|+|+|++|+ +++.++.++||++........
T Consensus 89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~ 166 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET 166 (297)
T ss_dssp CCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred ceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce
Confidence 9999999999999983 3 345555555555 3444433 3488999999999877 778899999999865455667
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECC-CCceeeeeecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 358 VLKGNLGAIRSIRFTSDGNFMAMAE-PADFVHVYDAK-NGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 358 ~~~~~~~~v~~l~~sp~g~~l~s~~-~d~~v~vwd~~-~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
.+..+...+.+++|+|+|++|++++ .++.++||++. .+.....+..+...+..++|+|+|++|++++.++.
T Consensus 167 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 239 (297)
T 2ojh_A 167 RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDAD 239 (297)
T ss_dssp ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETT
T ss_pred EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCC
Confidence 7777888999999999999888776 48889999876 45566667777788999999999999999988753
No 140
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=4.5e-19 Score=169.78 Aligned_cols=234 Identities=13% Similarity=0.122 Sum_probs=154.7
Q ss_pred EEecCCEEEEEeC---CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecC-C--ce
Q 013184 197 LAVRDNLLIAGGF---QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDME-R--FQ 270 (448)
Q Consensus 197 l~~~~~~lvsg~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~-~--~~ 270 (448)
++.+++ |++++. ++.|.+|++............. +...+..+.+ +|+|..+++++..++.|.+|++. . .+
T Consensus 47 ~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~-~~~~p~~~a~--spdg~~l~~~~~~~~~v~v~~~~~~g~~~ 122 (347)
T 3hfq_A 47 LSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA-PGTPPAYVAV--DEARQLVYSANYHKGTAEVMKIAADGALT 122 (347)
T ss_dssp ECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE-ESCCCSEEEE--ETTTTEEEEEETTTTEEEEEEECTTSCEE
T ss_pred EccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeec-CCCCCEEEEE--CCCCCEEEEEeCCCCEEEEEEeCCCCCee
Confidence 333777 555544 6899999996654333222222 2333445555 89988444444478999999996 2 33
Q ss_pred EEEEeecC----------CCeeEEEECCCCCEEEEEecCCcEEEEECC-CCceeE--eeecC-CCcEEEEEEcCCCCEEE
Q 013184 271 LSKHFSFP----------WPVNHTSLSPDGKLLVIVGDNPEGILVDSQ-TGKAIM--PLCGH-LDFSFASAWHPDGRIFA 336 (448)
Q Consensus 271 ~~~~~~~~----------~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~-~~~~~~--~l~~h-~~~v~~~~~~p~g~~l~ 336 (448)
.+..+.+. ..+.+++|+|+|+++++...++.|.+|++. +++... .+..+ ...+..++|+|+|++++
T Consensus 123 ~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~ 202 (347)
T 3hfq_A 123 LTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAF 202 (347)
T ss_dssp EEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred ecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEE
Confidence 33444322 237889999999966666678899999998 554332 22222 33678899999999666
Q ss_pred E-EeCCCcEEEEEccCC-Cc--ceEEEccCC------CCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCC---ceeeeee
Q 013184 337 T-GNQDKTCRVWDVRNL-SK--SVAVLKGNL------GAIRSIRFTSDGNFMA-MAEPADFVHVYDAKNG---FEKEQEI 402 (448)
Q Consensus 337 s-~~~d~~i~iwd~~~~-~~--~~~~~~~~~------~~v~~l~~sp~g~~l~-s~~~d~~v~vwd~~~~---~~~~~~~ 402 (448)
+ +..++.|++|++... +. .+..+.... ..+..++|+|+|++|+ +...++.|.+|++... ..+..+.
T Consensus 203 v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~ 282 (347)
T 3hfq_A 203 LAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS 282 (347)
T ss_dssp EEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe
Confidence 5 456889999998741 22 122333222 3488899999999885 4556899999998732 3334444
Q ss_pred cCcCceEEEEEccCCCeEEEEEecCCcceEEE
Q 013184 403 DFFGEISGMTFSPDTEALFIGVWDRTYGSLLQ 434 (448)
Q Consensus 403 ~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~ 434 (448)
.+...+.+++|+|||++|++++.+...-.++.
T Consensus 283 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 283 TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp CSSSCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 55567899999999999999987643333333
No 141
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=1.6e-20 Score=185.88 Aligned_cols=234 Identities=12% Similarity=0.047 Sum_probs=165.2
Q ss_pred EEEEecCCEEEEEeCCCeEEEEEcCCCC---------cee---EEEeecCCCCceeeEEEEeCCCCCeeEE----EEeCC
Q 013184 195 STLAVRDNLLIAGGFQGELICKYLDQPG---------VSF---CSRTTYDENAITNAVEIYNSPSGGIHFM----ASNND 258 (448)
Q Consensus 195 ~~l~~~~~~lvsg~~dg~i~vw~~~~~~---------~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~----s~s~d 258 (448)
.+++.++.++++|+.+| +++|+..... ... .......+...+.+++| +|++. +|+ +++.|
T Consensus 42 lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--spdg~-~lav~~~sgs~d 117 (434)
T 2oit_A 42 LAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLAL--SCDNL-TLSACMMSSEYG 117 (434)
T ss_dssp EEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEE--CTTSC-EEEEEEEETTTE
T ss_pred EEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEE--cCCCC-EEEEEEeccCCC
Confidence 34444788999999998 8888753210 000 00011223444566665 89987 555 78899
Q ss_pred CcEEEEecCCc--------eE---EEEee-cCCCeeEEEECCC-CCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEE
Q 013184 259 CGVRDFDMERF--------QL---SKHFS-FPWPVNHTSLSPD-GKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFA 325 (448)
Q Consensus 259 g~v~iwd~~~~--------~~---~~~~~-~~~~v~~~~~sp~-~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~ 325 (448)
+.|++||+.++ +. ...+. |...|.+++|+|+ +.+|++++.|+.|++||++++..+....+|...|.+
T Consensus 118 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~ 197 (434)
T 2oit_A 118 SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTS 197 (434)
T ss_dssp EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEE
T ss_pred ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeE
Confidence 99999998765 22 23333 7889999999997 899999999999999999999877777789999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCC-------CCeEEEEEcCCCCEEEEEe-CCC------eEEEEE
Q 013184 326 SAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNL-------GAIRSIRFTSDGNFMAMAE-PAD------FVHVYD 391 (448)
Q Consensus 326 ~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~v~~l~~sp~g~~l~s~~-~d~------~v~vwd 391 (448)
++|+|+|++|++|+.||+|++||++ +.....+..|. ..|.+++|++++.++++.+ .+| .+++|+
T Consensus 198 v~wspdg~~lasgs~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~ 275 (434)
T 2oit_A 198 VCWSPKGKQLAVGKQNGTVVQYLPT--LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMAL 275 (434)
T ss_dssp EEECTTSSCEEEEETTSCEEEECTT--CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCcEEEEccC--CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEE
Confidence 9999999999999999999999997 34455554432 3799999999988886543 333 499999
Q ss_pred CCCCce--e---eeeec-------CcCceEEEEEccCCCeEEEEEecCCcceEEE
Q 013184 392 AKNGFE--K---EQEID-------FFGEISGMTFSPDTEALFIGVWDRTYGSLLQ 434 (448)
Q Consensus 392 ~~~~~~--~---~~~~~-------~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~ 434 (448)
+..... . ..+.+ ...+-..+.+-++.++|++++....--.++.
T Consensus 276 l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~ 330 (434)
T 2oit_A 276 LPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILA 330 (434)
T ss_dssp CCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEE
T ss_pred eccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEE
Confidence 986521 1 11111 1122223444488888888877655444444
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=6.3e-20 Score=192.79 Aligned_cols=283 Identities=15% Similarity=0.139 Sum_probs=186.9
Q ss_pred eeeeCCCCeEEEecCCeEEEEecCCCce--eEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeE
Q 013184 138 LVWSTSKHDVYLMSHFSIVHWSSLSSKR--TEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGEL 213 (448)
Q Consensus 138 l~~~~~~~~v~~~~~~~v~~w~~~~~~~--~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i 213 (448)
+.|. ...+++.++..| +||+.+++. ..+........ ....... ........|.++++ + +.++.+ .++.|
T Consensus 31 ~~w~--g~~~~~~~~~~i-~~d~~tg~~~~~~l~~~~~~~~-~l~~~~~-~~~~~~~~v~~~~~spd-~~~~~~-~~~~i 103 (706)
T 2z3z_A 31 LQWM--GDNYVFIEGDDL-VFNKANGKSAQTTRFSAADLNA-LMPEGCK-FQTTDAFPSFRTLDAGR-GLVVLF-TQGGL 103 (706)
T ss_dssp CEEE--TTEEEEEETTEE-EEEC-------CEEEEHHHHHT-TC------------CCCEEEEETTT-TEEEEE-ETTEE
T ss_pred CcCc--CCeEEEEeCCcE-EEECCCCcEeeEEeechhHhhh-hccchhc-cccccccCceeEEECCC-CeEEEE-ECCEE
Confidence 4566 444555555558 999988776 55544321000 0000000 01111235788888 5 555555 45999
Q ss_pred EEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC-----ceEEEEeecCCC--------
Q 013184 214 ICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER-----FQLSKHFSFPWP-------- 280 (448)
Q Consensus 214 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~-----~~~~~~~~~~~~-------- 280 (448)
.+|++.+... ..+.. +...+..+.| +|+|+ .|+++ .++.|++|++.+ ++..........
T Consensus 104 ~~~d~~~~~~---~~l~~-~~~~~~~~~~--SpdG~-~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 104 VGFDMLARKV---TYLFD-TNEETASLDF--SPVGD-RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp EEEETTTTEE---EEEEC-CTTCCTTCEE--CTTSS-EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred EEEECCCCce---EEccC-CcccccCCcC--CCCCC-EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 9999977543 22222 2333455655 99997 45554 579999999998 776654442222
Q ss_pred -------eeEEEECCCCCEEEEEe---------------------------------cCCcEEEEECCCCceeEeee--c
Q 013184 281 -------VNHTSLSPDGKLLVIVG---------------------------------DNPEGILVDSQTGKAIMPLC--G 318 (448)
Q Consensus 281 -------v~~~~~sp~~~~l~~~~---------------------------------~d~~i~i~d~~~~~~~~~l~--~ 318 (448)
+.+++|+|+|++|++++ .+..|.+||+.+++...... .
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 255 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP 255 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC
Confidence 58999999999999987 34679999999988655432 4
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCC-----cEEEEEccCCCcceEEEc-c-CCC---CeEEEEEcC--CCCEEEEEeCCCe
Q 013184 319 HLDFSFASAWHPDGRIFATGNQDK-----TCRVWDVRNLSKSVAVLK-G-NLG---AIRSIRFTS--DGNFMAMAEPADF 386 (448)
Q Consensus 319 h~~~v~~~~~~p~g~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~-~-~~~---~v~~l~~sp--~g~~l~s~~~d~~ 386 (448)
|...+.+++|+|||++|++++.++ .|++||+.+ +.....+. . +.. .+.+++|+| +|++|++++.++.
T Consensus 256 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~ 334 (706)
T 2z3z_A 256 KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW 334 (706)
T ss_dssp TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence 677899999999999999987765 899999976 42333332 2 222 246789999 9999999999998
Q ss_pred EEEEECC-CCceeeeeecCcCceEE-EEEccCCCeEEEEEecCC--cceEEEEe
Q 013184 387 VHVYDAK-NGFEKEQEIDFFGEISG-MTFSPDTEALFIGVWDRT--YGSLLQYN 436 (448)
Q Consensus 387 v~vwd~~-~~~~~~~~~~~~~~v~~-~~fspdg~~L~~~~~D~~--~~~ll~~~ 436 (448)
++||.+. ++..+..+..+...+.+ ++|+|+|+.|+.++.+.. ...+..+.
T Consensus 335 ~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 335 NHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp CEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred cEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 9999876 56666777777777877 799999999988877643 23555554
No 143
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=5.9e-21 Score=188.87 Aligned_cols=187 Identities=16% Similarity=0.118 Sum_probs=146.1
Q ss_pred eeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc-----------e-----EEEEeecCCCeeEEEECCCCCEEE----EE
Q 013184 237 TNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF-----------Q-----LSKHFSFPWPVNHTSLSPDGKLLV----IV 296 (448)
Q Consensus 237 ~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~-----------~-----~~~~~~~~~~v~~~~~sp~~~~l~----~~ 296 (448)
.+.+++ ++.++ ++++++.++ +++|+.... . ....+.+...|.+++|+|++++|+ ++
T Consensus 39 ~n~lav--s~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 39 SSLLAV--SNKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CBCEEE--ETTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred ccEEEE--ecCCC-EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 466666 67766 777888887 889875321 1 112334667899999999999999 67
Q ss_pred ecCCcEEEEECCCC--------ce---eEeeecCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEEccCCCcceEEEccCCC
Q 013184 297 GDNPEGILVDSQTG--------KA---IMPLCGHLDFSFASAWHPD-GRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLG 364 (448)
Q Consensus 297 ~~d~~i~i~d~~~~--------~~---~~~l~~h~~~v~~~~~~p~-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 364 (448)
+.|+.|+|||+.++ +. +..+.+|...|.+++|+|+ +.+|++++.||+|++||+++ ...+....+|..
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~-~~~~~~~~~~~~ 193 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTE-TVKVCATLPSTV 193 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESS-SEEEEEEECGGG
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCC-CcceeeccCCCC
Confidence 78999999998654 22 4556779999999999997 88999999999999999987 455666677889
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecC-------cCceEEEEEccCCCeEEEE-EecCCc
Q 013184 365 AIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDF-------FGEISGMTFSPDTEALFIG-VWDRTY 429 (448)
Q Consensus 365 ~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-------~~~v~~~~fspdg~~L~~~-~~D~~~ 429 (448)
.|++++|+|+|++|++|+.||.|++||++ +.....+..| ...|.+++|++++.++++. ..|+.+
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 99999999999999999999999999998 5544444333 2379999999998877654 445443
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.86 E-value=1.1e-18 Score=165.97 Aligned_cols=262 Identities=12% Similarity=0.123 Sum_probs=171.9
Q ss_pred ccceeeeCCCCeEEEecC--CeEEEEecC--CCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEe
Q 013184 135 LRNLVWSTSKHDVYLMSH--FSIVHWSSL--SSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGG 208 (448)
Q Consensus 135 ~r~l~~~~~~~~v~~~~~--~~v~~w~~~--~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~ 208 (448)
...+.+.+.+..+++++. +.|.+|++. ++....+..+..+.. +..+++ ++++|++++
T Consensus 40 ~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~s~dg~~l~~~~ 102 (343)
T 1ri6_A 40 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS-----------------LTHISTDHQGQFVFVGS 102 (343)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC-----------------CSEEEECTTSSEEEEEE
T ss_pred CceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCC-----------------CcEEEEcCCCCEEEEEe
Confidence 345667777787888764 789999986 455444444332112 345555 788776665
Q ss_pred -CCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC-ceEEEE----ee--cCCC
Q 013184 209 -FQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER-FQLSKH----FS--FPWP 280 (448)
Q Consensus 209 -~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~----~~--~~~~ 280 (448)
.++.|.+|++.............. ...+..+.+ +|++..+++++..++.|++|++.+ ++.... .. ....
T Consensus 103 ~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~--s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~ 179 (343)
T 1ri6_A 103 YNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANI--SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAG 179 (343)
T ss_dssp TTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEE--CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCC
T ss_pred cCCCeEEEEECCCCccccccccccC-CCCceEEEE--CCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCC
Confidence 488999999962221112222222 233455555 899885554444899999999987 655432 22 3457
Q ss_pred eeEEEECCCCCEEEEEe-cCCcEEEEECCC--Cce--eEeee---cC---CCcEEEEEEcCCCCEEEEE-eCCCcEEEEE
Q 013184 281 VNHTSLSPDGKLLVIVG-DNPEGILVDSQT--GKA--IMPLC---GH---LDFSFASAWHPDGRIFATG-NQDKTCRVWD 348 (448)
Q Consensus 281 v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~--~~~--~~~l~---~h---~~~v~~~~~~p~g~~l~s~-~~d~~i~iwd 348 (448)
+.+++|+|+++++++++ .++.|.+|++.. ++. ...+. .. ...+..++|+|+|++|+++ ..++.|++|+
T Consensus 180 ~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d 259 (343)
T 1ri6_A 180 PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFS 259 (343)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEE
Confidence 88999999999776665 788999999953 433 22222 11 2457789999999987754 4789999999
Q ss_pred ccCC---CcceEEEccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEE--ECCCCcee--eeeecCcCceEEEEEccCCC
Q 013184 349 VRNL---SKSVAVLKGNLGAIRSIRFTSDGNFMAMAE-PADFVHVY--DAKNGFEK--EQEIDFFGEISGMTFSPDTE 418 (448)
Q Consensus 349 ~~~~---~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~-~d~~v~vw--d~~~~~~~--~~~~~~~~~v~~~~fspdg~ 418 (448)
+... .+.+..+..+.. +..++|+|+|++|++++ .++.|.+| |..++... ..+. ....+.+++|.|+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~-~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 260 VSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA-VGQGPMWVVVNAHEG 335 (343)
T ss_dssp ECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEE-CSSSCCEEEEEEEC-
T ss_pred EcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccc-cCCCCeeEEEEcccC
Confidence 9731 233444544444 88999999999998888 57999999 54465432 2222 234577888887644
No 145
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.86 E-value=5.4e-20 Score=189.02 Aligned_cols=265 Identities=11% Similarity=0.027 Sum_probs=192.8
Q ss_pred eeeeCCCCeEEEec--CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-cCCEEEEEeC---CC
Q 013184 138 LVWSTSKHDVYLMS--HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-RDNLLIAGGF---QG 211 (448)
Q Consensus 138 l~~~~~~~~v~~~~--~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-~~~~lvsg~~---dg 211 (448)
+..++++..|++++ ++++.+|++.++.. ..+..+.. ..+.++++ .++++++++. +.
T Consensus 27 ~~~~~DG~~la~~s~~~g~~~lw~~~~g~~---~~lt~~~~---------------~~~~~~~~spd~~l~~~~~~~g~~ 88 (582)
T 3o4h_A 27 LQGVVDGDKLLVVGFSEGSVNAYLYDGGET---VKLNREPI---------------NSVLDPHYGVGRVILVRDVSKGAE 88 (582)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEETTEE---EECCSSCC---------------SEECEECTTCSEEEEEEECSTTSC
T ss_pred eecCCCCCeEEEEEccCCceeEEEEcCCCc---Eeeecccc---------------cccccccCCCCeEEEEeccCCCCc
Confidence 44567777787764 67899999744332 22222110 13666777 2266666665 45
Q ss_pred eEEEEEcCC--CCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCC
Q 013184 212 ELICKYLDQ--PGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPD 289 (448)
Q Consensus 212 ~i~vw~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~ 289 (448)
...+|.++. .+... .+.... + .....+ +|++...+++++.++.+.+||+.++++.....+.. .+++|+|+
T Consensus 89 ~~~l~~~~~~~~g~~~--~l~~~~-~-~~~~~~--s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spD 160 (582)
T 3o4h_A 89 QHALFKVNTSRPGEEQ--RLEAVK-P-MRILSG--VDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIR 160 (582)
T ss_dssp CEEEEEEETTSTTCCE--ECTTSC-S-BEEEEE--EECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEE
T ss_pred ceEEEEEeccCCCccc--cccCCC-C-ceeeee--CCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCC
Confidence 567776655 33322 222222 2 223444 67776555555556666799999998777666554 89999999
Q ss_pred CCEEEEEecC----CcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCC--cEEEEEccCCCcceEEEccCC
Q 013184 290 GKLLVIVGDN----PEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDK--TCRVWDVRNLSKSVAVLKGNL 363 (448)
Q Consensus 290 ~~~l~~~~~d----~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~ 363 (448)
|++|++++.+ +.|++||+.+++.. .+..|...+..++|+|||+.|+++..++ .|++||+.. ++.. .+..|.
T Consensus 161 G~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~ 237 (582)
T 3o4h_A 161 GDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD-GSVE-DLELPS 237 (582)
T ss_dssp TTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-CCEE-ECCCSC
T ss_pred CCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC-CcEE-EccCCC
Confidence 9999988776 78999999988765 6778889999999999999999888888 899999975 5555 677777
Q ss_pred CCeEEEE--------EcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEEE
Q 013184 364 GAIRSIR--------FTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQY 435 (448)
Q Consensus 364 ~~v~~l~--------~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~ 435 (448)
..+..+. |+|||.++++++.++.++||++ ++... ...+.|.+++|+ +|+.+++++.+.+-..+..+
T Consensus 238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~ 311 (582)
T 3o4h_A 238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSL 311 (582)
T ss_dssp SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEE
Confidence 7777677 9999999999999999999999 65443 344778999999 99999999988877777766
Q ss_pred ec
Q 013184 436 NR 437 (448)
Q Consensus 436 ~~ 437 (448)
..
T Consensus 312 d~ 313 (582)
T 3o4h_A 312 PS 313 (582)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 146
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.86 E-value=1.2e-19 Score=191.55 Aligned_cols=265 Identities=8% Similarity=0.029 Sum_probs=193.2
Q ss_pred ccceeeeCCCCeEEEecCCeEEEEecCCC---ceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeC
Q 013184 135 LRNLVWSTSKHDVYLMSHFSIVHWSSLSS---KRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGF 209 (448)
Q Consensus 135 ~r~l~~~~~~~~v~~~~~~~v~~w~~~~~---~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~ 209 (448)
+..+.|++++..+++++.+.|++|++.++ .... +.++. ..+.++++ +|++|+.++
T Consensus 111 v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~---l~~~~----------------~~~~~~~~SPDG~~la~~~- 170 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQ---LTHGE----------------GFATDAKLSPKGGFVSFIR- 170 (741)
T ss_dssp SCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCB---CCCSS----------------SCEEEEEECTTSSEEEEEE-
T ss_pred cceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEE---cccCC----------------cccccccCCCCCCEEEEEe-
Confidence 45677889999999998899999998765 3222 22221 13666666 899998887
Q ss_pred CCeEEEEEcCCCCceeEEEeecCCCC-c---------------eeeEEEEeCCCCCeeEEEEeCCC--------------
Q 013184 210 QGELICKYLDQPGVSFCSRTTYDENA-I---------------TNAVEIYNSPSGGIHFMASNNDC-------------- 259 (448)
Q Consensus 210 dg~i~vw~~~~~~~~~~~~~~~~~~~-~---------------~~~v~~~~~~~~~~~l~s~s~dg-------------- 259 (448)
++.|.+|++.+... ..+...+.. + ...+. ++|+|. .|++++.|+
T Consensus 171 ~~~i~~~d~~~g~~---~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~--~SpDg~-~l~~~~~d~~~~~~~~~~~~~p~ 244 (741)
T 2ecf_A 171 GRNLWVIDLASGRQ---MQLTADGSTTIGNGIAEFVADEEMDRHTGYW--WAPDDS-AIAYARIDESPVPVQKRYEVYAD 244 (741)
T ss_dssp TTEEEEEETTTTEE---EECCCCCCSSEEESCCCHHHHHHSCCCCSEE--ECTTSS-CEEEEEEECTTSCEEEEEEECSS
T ss_pred CCcEEEEecCCCCE---EEeccCCccceeccccceeeeeccccccceE--ECCCCC-EEEEEEEcCCCCceEecCCCCCC
Confidence 56999999976542 222222221 1 23444 499997 566665554
Q ss_pred -------------------cEEEEecCC-ceEEEEe---ecCCCeeEEEECCCCCEEEEEec-----CCcEEEEECCCCc
Q 013184 260 -------------------GVRDFDMER-FQLSKHF---SFPWPVNHTSLSPDGKLLVIVGD-----NPEGILVDSQTGK 311 (448)
Q Consensus 260 -------------------~v~iwd~~~-~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~-----d~~i~i~d~~~~~ 311 (448)
.|++||+.+ ++..... .+...+..++| |+|+.|++++. +..|++||+.+++
T Consensus 245 ~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~ 323 (741)
T 2ecf_A 245 RTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ 323 (741)
T ss_dssp CEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC
T ss_pred cccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc
Confidence 789999988 7765543 25667899999 99999998764 5679999999998
Q ss_pred eeEeeecCCC----cEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEE-EEcCCCCEEEEEeC-CC
Q 013184 312 AIMPLCGHLD----FSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSI-RFTSDGNFMAMAEP-AD 385 (448)
Q Consensus 312 ~~~~l~~h~~----~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l-~~sp~g~~l~s~~~-d~ 385 (448)
....+..+.. .+..++|+|+|+++++++.++.++||.+...+. ...+..+...|..+ .|+|+|+.|+..+. ++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~ 402 (741)
T 2ecf_A 324 QRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIES 402 (741)
T ss_dssp EEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSC
T ss_pred eEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCC
Confidence 8777765543 345789999999999999999999998764345 77888888888887 59999998765544 44
Q ss_pred --eEEEEECCC-CceeeeeecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 386 --FVHVYDAKN-GFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 386 --~v~vwd~~~-~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
.++||++.. +.....+.. ...+.+++|+|||++|+....+..
T Consensus 403 ~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~ 447 (741)
T 2ecf_A 403 ARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNS 447 (741)
T ss_dssp TTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETT
T ss_pred CceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCC
Confidence 899999864 444444544 567889999999999998766543
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=7.8e-19 Score=167.91 Aligned_cols=223 Identities=14% Similarity=0.070 Sum_probs=173.9
Q ss_pred eEEEEe--cCCEEEEEeC-------CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEE
Q 013184 194 VSTLAV--RDNLLIAGGF-------QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDF 264 (448)
Q Consensus 194 i~~l~~--~~~~lvsg~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iw 264 (448)
+..+++ +++++++++. ++.|.+|+..+......... . .....+.+ +|+|+.+++++..++.|.+|
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~--~~~~~~~~--s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--D--LKPFGATI--NNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--S--SCCCSEEE--ETTTTEEEEEETTTTEEEEE
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--C--CCcceEEE--CCCCCEEEEEecCCCEEEEE
Confidence 455555 7777777764 56899999987764432222 2 22345555 89988677777778999999
Q ss_pred ecCCceEEEEeecCC----------CeeEEEECCCCCEEEEEe--cCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCC
Q 013184 265 DMERFQLSKHFSFPW----------PVNHTSLSPDGKLLVIVG--DNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDG 332 (448)
Q Consensus 265 d~~~~~~~~~~~~~~----------~v~~~~~sp~~~~l~~~~--~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g 332 (448)
|+.+++.+..+.... .+.+++|+|+++.+++++ .++.|.+||..+++.+..+..+...+..++|+|+|
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 999999888877322 268899999999888776 47889999999999988887566667889999999
Q ss_pred CEEEEEeCCCcEEEEEccCCCcceEEEcc----CCCCeEEEEEcCCCCEEEEEeCC-CeEEEEECCCCceeeeeecCcCc
Q 013184 333 RIFATGNQDKTCRVWDVRNLSKSVAVLKG----NLGAIRSIRFTSDGNFMAMAEPA-DFVHVYDAKNGFEKEQEIDFFGE 407 (448)
Q Consensus 333 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~l~~sp~g~~l~s~~~d-~~v~vwd~~~~~~~~~~~~~~~~ 407 (448)
+++++++.++.|.+||+.+ .+.+..+.. +...+..++|+|+|++|++++.+ +.|.+||+.+++....+....
T Consensus 197 ~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-- 273 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTAD-NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-- 273 (353)
T ss_dssp TEEEEECTTSEEEEEETTT-TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--
T ss_pred CEEEEEcCCCeEEEEECCC-CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--
Confidence 9999999999999999976 666666553 44567889999999988777654 899999999988776665432
Q ss_pred eEEEEEccCCCeEEEEEe
Q 013184 408 ISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 408 v~~~~fspdg~~L~~~~~ 425 (448)
..+++|+|+|++|+++..
T Consensus 274 ~~~~~~s~dg~~l~v~~~ 291 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHR 291 (353)
T ss_dssp CCCEEEETTTTEEEEEET
T ss_pred CceEEECCCCCEEEEEEC
Confidence 367999999998888764
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=4.5e-19 Score=194.37 Aligned_cols=223 Identities=14% Similarity=0.089 Sum_probs=177.6
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecC----------CCCceeeEEEEeC-CCCCeeEEEEeCCCcEE
Q 013184 194 VSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYD----------ENAITNAVEIYNS-PSGGIHFMASNNDCGVR 262 (448)
Q Consensus 194 i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~-~~~~~~l~s~s~dg~v~ 262 (448)
..+++.+++.|+.+ .++.|.+|++..... ..+..+ +...+..+.+ + |+|. .+++++ ++.|+
T Consensus 249 ~~~~SpDG~~la~~-~~~~i~~~d~~~~~l---~~l~~~~~~~~~~~~~~~~~v~~~~~--S~pdG~-~la~~~-~~~i~ 320 (1045)
T 1k32_A 249 PRHLNTDGRRILFS-KGGSIYIFNPDTEKI---EKIEIGDLESPEDRIISIPSKFAEDF--SPLDGD-LIAFVS-RGQAF 320 (1045)
T ss_dssp EEEEEESSSCEEEE-ETTEEEEECTTTCCE---EECCCCCCCBCCSEEEECGGGGEEEE--EECGGG-CEEEEE-TTEEE
T ss_pred eeeEcCCCCEEEEE-eCCEEEEecCCceEe---eeeccCcccccccccccccccceeee--cCCCCC-EEEEEE-cCEEE
Confidence 34666799988887 589999999843221 122211 1123445555 8 9987 566665 78999
Q ss_pred EEecCCceEEEEeecCC-CeeEEEECCCCCEEEEEecCCcEE-EEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeC
Q 013184 263 DFDMERFQLSKHFSFPW-PVNHTSLSPDGKLLVIVGDNPEGI-LVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340 (448)
Q Consensus 263 iwd~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~d~~i~-i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~ 340 (448)
+|++.+++......+.. .+..++|+ +|+.|++++.+..+. +|++.+++... +.+|...+..++|+|+|++|++++.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~ 398 (1045)
T 1k32_A 321 IQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVAND 398 (1045)
T ss_dssp EECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEET
T ss_pred EEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECC
Confidence 99999887666545666 89999999 999999999888888 99998876544 4478889999999999999999999
Q ss_pred CCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCC----------eEEEEECCCCceeeeeecCcCceEE
Q 013184 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD----------FVHVYDAKNGFEKEQEIDFFGEISG 410 (448)
Q Consensus 341 d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~----------~v~vwd~~~~~~~~~~~~~~~~v~~ 410 (448)
++.|++||+.+ ++....+.+|.+.+.+++|||||++|++++.++ .|++||+.+++ ...+..|...+.+
T Consensus 399 ~~~v~~~d~~t-g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~ 476 (1045)
T 1k32_A 399 RFEIMTVDLET-GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYA 476 (1045)
T ss_dssp TSEEEEEETTT-CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEE
T ss_pred CCeEEEEECCC-CceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCC
Confidence 99999999976 666666768889999999999999999887654 89999999876 6667778888999
Q ss_pred EEEccCCCeEEEEEecCC
Q 013184 411 MTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 411 ~~fspdg~~L~~~~~D~~ 428 (448)
++|+|||++|++++.++.
T Consensus 477 ~~~spdG~~l~~~s~~~~ 494 (1045)
T 1k32_A 477 PAFDADSKNLYYLSYRSL 494 (1045)
T ss_dssp EEECTTSCEEEEEESCCC
T ss_pred ceEcCCCCEEEEEecccC
Confidence 999999999999887654
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=5.6e-18 Score=163.12 Aligned_cols=260 Identities=13% Similarity=0.126 Sum_probs=172.3
Q ss_pred cceeeeCCCCeEEEecC-----CeEEEEecCC--CceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEe
Q 013184 136 RNLVWSTSKHDVYLMSH-----FSIVHWSSLS--SKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGG 208 (448)
Q Consensus 136 r~l~~~~~~~~v~~~~~-----~~v~~w~~~~--~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~ 208 (448)
+.+.+.+.+..+|+++. +.|.+|+... +....+.....+. .....+++++++|++++
T Consensus 53 ~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~----------------~~p~~~~~dg~~l~~~~ 116 (361)
T 3scy_A 53 SYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG----------------ADPCYLTTNGKNIVTAN 116 (361)
T ss_dssp CSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS----------------SCEEEEEECSSEEEEEE
T ss_pred ceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC----------------CCcEEEEECCCEEEEEE
Confidence 44567788888888865 5798888654 4444443332111 12455666888777766
Q ss_pred -CCCeEEEEEcCCCCceeE--EEeecCC---------CCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce------
Q 013184 209 -FQGELICKYLDQPGVSFC--SRTTYDE---------NAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ------ 270 (448)
Q Consensus 209 -~dg~i~vw~~~~~~~~~~--~~~~~~~---------~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~------ 270 (448)
.+|.|.+|++...+.... ....... ...+..+ .++|+|..+++++..++.|++|++....
T Consensus 117 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~ 194 (361)
T 3scy_A 117 YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCV--RITPDGKYLLADDLGTDQIHKFNINPNANADNKE 194 (361)
T ss_dssp TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEE--EECTTSSEEEEEETTTTEEEEEEECTTCCTTTCC
T ss_pred CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEE--EECCCCCEEEEEeCCCCEEEEEEEcCCCCccccc
Confidence 678999999976542211 1111110 1112334 4499998666666668999999876432
Q ss_pred -E-------EEEeecCCCeeEEEECCCCCEEEEEe-cCCcEEEEECCCCce--eEeee---cCCCcEEEEEEcCCCCEEE
Q 013184 271 -L-------SKHFSFPWPVNHTSLSPDGKLLVIVG-DNPEGILVDSQTGKA--IMPLC---GHLDFSFASAWHPDGRIFA 336 (448)
Q Consensus 271 -~-------~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~--~~~l~---~h~~~v~~~~~~p~g~~l~ 336 (448)
+ .........+.+++|+|+|+++++++ .++.|.+|++.+++. +..+. .+......++|+|+|++|+
T Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~ 274 (361)
T 3scy_A 195 KFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLY 274 (361)
T ss_dssp CCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEE
T ss_pred ceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEE
Confidence 1 12223456688999999999888877 688999999987754 23232 3445678999999999987
Q ss_pred EEeCC--CcEEEEEccCC-Cc--ceEEEccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEE--ECCCCceeeee-ecCcCc
Q 013184 337 TGNQD--KTCRVWDVRNL-SK--SVAVLKGNLGAIRSIRFTSDGNFMAMAE-PADFVHVY--DAKNGFEKEQE-IDFFGE 407 (448)
Q Consensus 337 s~~~d--~~i~iwd~~~~-~~--~~~~~~~~~~~v~~l~~sp~g~~l~s~~-~d~~v~vw--d~~~~~~~~~~-~~~~~~ 407 (448)
+++.+ +.|.+|++... +. .+..+.. ...+..++|+|+|++|++++ .++.|.+| |..+++..... ..+...
T Consensus 275 v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~ 353 (361)
T 3scy_A 275 ASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDK 353 (361)
T ss_dssp EEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSS
T ss_pred EECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCC
Confidence 77765 88999999621 22 3344444 45678999999999999888 56899996 55566654332 124457
Q ss_pred eEEEEEc
Q 013184 408 ISGMTFS 414 (448)
Q Consensus 408 v~~~~fs 414 (448)
+.+++|.
T Consensus 354 p~~v~~~ 360 (361)
T 3scy_A 354 PVCLKFV 360 (361)
T ss_dssp EEEEEEE
T ss_pred CeEEEEc
Confidence 8888886
No 150
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.84 E-value=1.5e-18 Score=164.79 Aligned_cols=218 Identities=11% Similarity=0.004 Sum_probs=160.1
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceE-EEEee-c
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQL-SKHFS-F 277 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~-~ 277 (448)
.+..+++++.++.|.+|++.+...... +.. ..... .+ .++|++..+++++..++.|.+||+.+++. ...+. +
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~--~~~-~~~~~-~~--~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQ--ITL-GYDFV-DT--AITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEE--EEC-CCCEE-EE--EECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred CCEEEEEecCCCeEEEEeCcccceeee--EEc-cCCcc-eE--EEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 345678888999999999987765322 222 22233 44 45999986666666689999999999887 66666 4
Q ss_pred CCCeeEEEECCCCCEEEEEecCC---cEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEE-EeCCCc-EEEEEccCC
Q 013184 278 PWPVNHTSLSPDGKLLVIVGDNP---EGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFAT-GNQDKT-CRVWDVRNL 352 (448)
Q Consensus 278 ~~~v~~~~~sp~~~~l~~~~~d~---~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s-~~~d~~-i~iwd~~~~ 352 (448)
..+..+++|+|+|++++++..++ .|.+||+.+++.+..+..+ ....+++|+|+|+++++ +..++. |.+|++...
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence 44544499999999999555553 8999999999988877654 45689999999985554 455688 999999753
Q ss_pred Ccce---EEEccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCce---eeeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 353 SKSV---AVLKGNLGAIRSIRFTSDGNFMAMAE-PADFVHVYDAKNGFE---KEQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 353 ~~~~---~~~~~~~~~v~~l~~sp~g~~l~s~~-~d~~v~vwd~~~~~~---~~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
+... .........+..++|+|+|++|++++ .++.|++||+.+++. +..+. ....+.+++|+|+|++|+++..
T Consensus 162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECS
T ss_pred CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEc
Confidence 3221 11223345679999999999766655 578999999998887 55554 3467889999999998887643
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=6.6e-18 Score=162.57 Aligned_cols=235 Identities=12% Similarity=0.094 Sum_probs=153.7
Q ss_pred EEEecCCEEEEEeCC----CeEEEEEcCCC-CceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 196 TLAVRDNLLIAGGFQ----GELICKYLDQP-GVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 196 ~l~~~~~~lvsg~~d----g~i~vw~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
+++.++++|++++.+ |.|.+|+++.. +..........+......+.+ ++..++++...++.|.+|++....
T Consensus 56 ~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g 131 (361)
T 3scy_A 56 IPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT----NGKNIVTANYSGGSITVFPIGQDG 131 (361)
T ss_dssp EECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTS
T ss_pred EECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCC
Confidence 334488989988876 89999999875 322111111222223334433 666455555578999999997532
Q ss_pred EE----EEeec-----------CCCeeEEEECCCCCEEEEEe-cCCcEEEEECCCCce------e-------EeeecCCC
Q 013184 271 LS----KHFSF-----------PWPVNHTSLSPDGKLLVIVG-DNPEGILVDSQTGKA------I-------MPLCGHLD 321 (448)
Q Consensus 271 ~~----~~~~~-----------~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~------~-------~~l~~h~~ 321 (448)
.+ ....+ ...+.+++|+|+|+++++++ .++.|.+|++..... + .....+..
T Consensus 132 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 211 (361)
T 3scy_A 132 ALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGS 211 (361)
T ss_dssp CBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTC
T ss_pred cCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCC
Confidence 22 11111 12347899999999776665 478999998764331 1 11223455
Q ss_pred cEEEEEEcCCCCEEEEEe-CCCcEEEEEccCCCcc--eEEEc---cCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEECC
Q 013184 322 FSFASAWHPDGRIFATGN-QDKTCRVWDVRNLSKS--VAVLK---GNLGAIRSIRFTSDGNFMAMAEPA--DFVHVYDAK 393 (448)
Q Consensus 322 ~v~~~~~~p~g~~l~s~~-~d~~i~iwd~~~~~~~--~~~~~---~~~~~v~~l~~sp~g~~l~s~~~d--~~v~vwd~~ 393 (448)
.+..++|+|+|+++++++ .++.|.+|++.. +.. +..+. .+......++|+|+|++|+++..+ +.|.+|++.
T Consensus 212 ~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 212 GPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred CCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 678999999999887777 689999999974 432 22222 233456899999999999777665 899999985
Q ss_pred --CCce--eeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEEEe
Q 013184 394 --NGFE--KEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 394 --~~~~--~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~ 436 (448)
++.. +..+.. ...+.+++|+|+|++|++++.+...-.++.++
T Consensus 291 ~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 291 ETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp TTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 4442 223333 45688999999999999998654333344343
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=9.4e-19 Score=166.94 Aligned_cols=215 Identities=13% Similarity=0.110 Sum_probs=159.4
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCC
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPW 279 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 279 (448)
++.++++++.++.|.+|++.+.... ..+.......+..+.+ +|++..+++++..++.|.+||+.+++.+..+....
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~--s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~ 85 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVY--KSCVMPDKFGPGTAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 85 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEE--EEEECSSCCSSCEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEE--EEEecCCCCCCceeEE--CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc
Confidence 6778999999999999999876533 2222222112345554 89987666777788999999999999887776322
Q ss_pred -------CeeEEEECCCCCEEEEEecC------------CcEEEEECCCCce---eEeeecCCCcEEEEEEcCCCCEEEE
Q 013184 280 -------PVNHTSLSPDGKLLVIVGDN------------PEGILVDSQTGKA---IMPLCGHLDFSFASAWHPDGRIFAT 337 (448)
Q Consensus 280 -------~v~~~~~sp~~~~l~~~~~d------------~~i~i~d~~~~~~---~~~l~~h~~~v~~~~~~p~g~~l~s 337 (448)
.+.+++|+|+|+++++++.+ +.|.+||+.+++. +..+. +...+.+++|+|+|+ +++
T Consensus 86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~ 163 (349)
T 1jmx_B 86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYV 163 (349)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEE
T ss_pred ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEE
Confidence 37899999999999998865 8999999988543 33343 344678899999999 555
Q ss_pred EeCCCcEEEEEccCCCcceEEEccCC------------------------------------------------------
Q 013184 338 GNQDKTCRVWDVRNLSKSVAVLKGNL------------------------------------------------------ 363 (448)
Q Consensus 338 ~~~d~~i~iwd~~~~~~~~~~~~~~~------------------------------------------------------ 363 (448)
++. .|.+||+.+ ++.+..+..+.
T Consensus 164 ~~~--~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 240 (349)
T 1jmx_B 164 AGP--DIYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 240 (349)
T ss_dssp ESS--SEEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred ccC--cEEEEeCCC-CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEec
Confidence 543 499999976 55544443221
Q ss_pred --------------CCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEec
Q 013184 364 --------------GAIRSIRFTS-DGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 364 --------------~~v~~l~~sp-~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D 426 (448)
..+..++|+| +|++|+++ ++.|++||+.+++....+. ....+.+++|+|+|++|++++.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~ 315 (349)
T 1jmx_B 241 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTF 315 (349)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBS
T ss_pred cCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-CCCCccceEECCCCCEEEEecCC
Confidence 1345678889 99999988 7899999999987766554 34567899999999999987544
No 153
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.83 E-value=1.1e-19 Score=191.27 Aligned_cols=221 Identities=13% Similarity=0.056 Sum_probs=161.4
Q ss_pred eEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCC---ceeeEEEEeCCCCCeeEEEEeCC---------C
Q 013184 194 VSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENA---ITNAVEIYNSPSGGIHFMASNND---------C 259 (448)
Q Consensus 194 i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~s~d---------g 259 (448)
+.++++ +++++++ +.||+|++|++.+.... .+...+.. .+..+.+ +|+|+ +|++++.+ +
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~---~~~~~~~~~~~~v~~~~~--SpDg~-~l~~~~~~~~~~~~~~~~ 91 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTST---VLIEGKKIESLRAIRYEI--SPDRE-YALFSYNVEPIYQHSYTG 91 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE---EEECTTTTTTTTCSEEEE--CTTSS-EEEEEESCCCCSSSCCCS
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE---EEeccccccccccceEEE--CCCCC-EEEEEecCccceeeccee
Confidence 445555 7776655 78999999999887653 22223322 2455555 99987 66666654 7
Q ss_pred cEEEEecCCceEEEEee---cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcE-------------
Q 013184 260 GVRDFDMERFQLSKHFS---FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFS------------- 323 (448)
Q Consensus 260 ~v~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v------------- 323 (448)
.+++||+.+++...... +...+..++|||+|+.|++++. +.|++||+.+++.......+...+
T Consensus 92 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 92 YYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp EEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred eEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence 88899999887632222 2334889999999999999887 699999999988776555443322
Q ss_pred -----EEEEEcCCCCEEEEEeCCC----------------------------------cEEEEEccCCCcceEEEccC--
Q 013184 324 -----FASAWHPDGRIFATGNQDK----------------------------------TCRVWDVRNLSKSVAVLKGN-- 362 (448)
Q Consensus 324 -----~~~~~~p~g~~l~s~~~d~----------------------------------~i~iwd~~~~~~~~~~~~~~-- 362 (448)
.+++|+|||++|++++.++ .|++||+.+ ++....+..+
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~-~~~~~~l~~~~~ 249 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG-PTHDLEMMPPDD 249 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS-SCCCEECCCCCC
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC-CceeEEeeCCcc
Confidence 6899999999999987553 799999976 5544556544
Q ss_pred ----CCCeEEEEEcCCCCEEEEEeCC----CeEEEEECCCCceeeeeec-CcCce----EEEEEccCCCeEEEE
Q 013184 363 ----LGAIRSIRFTSDGNFMAMAEPA----DFVHVYDAKNGFEKEQEID-FFGEI----SGMTFSPDTEALFIG 423 (448)
Q Consensus 363 ----~~~v~~l~~sp~g~~l~s~~~d----~~v~vwd~~~~~~~~~~~~-~~~~v----~~~~fspdg~~L~~~ 423 (448)
...+..++|||||++|++.... ..|++||+.+++....+.. +.+.+ ..++|+|||+.|+..
T Consensus 250 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence 5678999999999998776533 5799999999876655433 33444 388999999988875
No 154
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.83 E-value=2.8e-18 Score=188.05 Aligned_cols=262 Identities=12% Similarity=0.052 Sum_probs=197.6
Q ss_pred ccceeee-CCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-cCCEEEEEeCCCe
Q 013184 135 LRNLVWS-TSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-RDNLLIAGGFQGE 212 (448)
Q Consensus 135 ~r~l~~~-~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-~~~~lvsg~~dg~ 212 (448)
+..+.|+ +++..+++++++.|.+|+..++.... +.+|.. ..+..+++ +++.|+.++.++.
T Consensus 298 v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~---~~~~~~---------------~~~~~~~~sdg~~l~~~s~~~~ 359 (1045)
T 1k32_A 298 KFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK---VPEPLR---------------IRYVRRGGDTKVAFIHGTREGD 359 (1045)
T ss_dssp GGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE---CSCCSC---------------EEEEEECSSSEEEEEEEETTEE
T ss_pred cceeeecCCCCCEEEEEEcCEEEEEcCCCCceEE---ccCCCc---------------ceEEeeeEcCCCeEEEEECCCc
Confidence 5567788 88888888888899999976654322 332221 13555555 6788888888888
Q ss_pred EE-EEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCC
Q 013184 213 LI-CKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDG 290 (448)
Q Consensus 213 i~-vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~ 290 (448)
+. +|++..... ..+. .+...+..+.+ +|+|. .|++++.++.|++||+.+++...... +...+.+++|+|+|
T Consensus 360 l~~~~d~~~~~~---~~l~-~~~~~~~~~~~--SpDG~-~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG 432 (1045)
T 1k32_A 360 FLGIYDYRTGKA---EKFE-ENLGNVFAMGV--DRNGK-FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNS 432 (1045)
T ss_dssp EEEEEETTTCCE---EECC-CCCCSEEEEEE--CTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTS
T ss_pred eEEEEECCCCCc---eEec-CCccceeeeEE--CCCCC-EEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCC
Confidence 88 888876542 2333 44444555555 99987 78889999999999999999888774 88889999999999
Q ss_pred CEEEEEecCC----------cEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCC-------
Q 013184 291 KLLVIVGDNP----------EGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLS------- 353 (448)
Q Consensus 291 ~~l~~~~~d~----------~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~------- 353 (448)
++|++++.++ .|++||+.+++ +..+..|...+..++|+|+|++|++++.++..++|+.....
T Consensus 433 ~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 511 (1045)
T 1k32_A 433 RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVS 511 (1045)
T ss_dssp CEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCB
T ss_pred CeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCc
Confidence 9999887654 89999999887 66788888889999999999999999987777666542210
Q ss_pred -----------------------------------cceEEEccCCCCeEEEEEcCCCCEEEE-------------EeCCC
Q 013184 354 -----------------------------------KSVAVLKGNLGAIRSIRFTSDGNFMAM-------------AEPAD 385 (448)
Q Consensus 354 -----------------------------------~~~~~~~~~~~~v~~l~~sp~g~~l~s-------------~~~d~ 385 (448)
..+..+..+.+.+..++++|+|+++++ .....
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~ 591 (1045)
T 1k32_A 512 KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKG 591 (1045)
T ss_dssp EEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCE
T ss_pred eeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCc
Confidence 122344456678899999999987775 12245
Q ss_pred eEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEec
Q 013184 386 FVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 386 ~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D 426 (448)
.|++||+.+++... +. ..+.+++|||||+.|++++.|
T Consensus 592 ~l~~~d~~~~~~~~-l~---~~v~~~~~S~DG~~l~~~~~~ 628 (1045)
T 1k32_A 592 VLLKYDVKTRKVTE-VK---NNLTDLRLSADRKTVMVRKDD 628 (1045)
T ss_dssp EEEEEETTTCCEEE-EE---EEEEEEEECTTSCEEEEEETT
T ss_pred eEEEEECCCCcEEE-ee---cCcceEEECCCCCEEEEEcCC
Confidence 78999998876532 22 568899999999999998866
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.83 E-value=1.6e-17 Score=157.50 Aligned_cols=230 Identities=15% Similarity=0.100 Sum_probs=165.7
Q ss_pred cCCeEEEEecCCCceeEEEecCCCC-CCCCCCCCCcccCCcceeeEEEEecCCEE-EEEeCCCeEEEEEcCCCCceeEEE
Q 013184 151 SHFSIVHWSSLSSKRTEVLDVSGHV-APCEKHPGNLLEGFTQTQVSTLAVRDNLL-IAGGFQGELICKYLDQPGVSFCSR 228 (448)
Q Consensus 151 ~~~~v~~w~~~~~~~~~~~~~~gh~-~p~~~~~~~~~~~~~~~~i~~l~~~~~~l-vsg~~dg~i~vw~~~~~~~~~~~~ 228 (448)
.+++|.+||..+++....+.+.+.. .| .-.+++.+++.+ ++++.++.|.+|++.+........
T Consensus 9 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~---------------~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 73 (337)
T 1pby_B 9 RPDKLVVIDTEKMAVDKVITIADAGPTP---------------MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCTTCC---------------CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEEcCCCCCCc---------------cceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence 4678999999877665555543211 11 112334477655 566678999999998766432222
Q ss_pred eecC--CCCceeeEEEEeCCCCCeeEEEEe------------CCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEE
Q 013184 229 TTYD--ENAITNAVEIYNSPSGGIHFMASN------------NDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLV 294 (448)
Q Consensus 229 ~~~~--~~~~~~~v~~~~~~~~~~~l~s~s------------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 294 (448)
.... +...+..+.+ +|+|. .+++++ .++.|.+||+.+++.+..+.....+.+++|+|++++|+
T Consensus 74 ~~~~~~~~~~~~~~~~--s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 150 (337)
T 1pby_B 74 LSTPEERVKSLFGAAL--SPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLY 150 (337)
T ss_dssp CCBTTEEEECTTCEEE--CTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEE
T ss_pred cCCcccccccccceEE--CCCCC-EEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEE
Confidence 2110 0112345555 89987 455554 57999999999999888888777789999999999888
Q ss_pred EEecCCcEEEEECCCCceeEeeecCC------------------------------------------------------
Q 013184 295 IVGDNPEGILVDSQTGKAIMPLCGHL------------------------------------------------------ 320 (448)
Q Consensus 295 ~~~~d~~i~i~d~~~~~~~~~l~~h~------------------------------------------------------ 320 (448)
++ ++.|.+||+.+++.+..+..+.
T Consensus 151 ~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 228 (337)
T 1pby_B 151 GL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET 228 (337)
T ss_dssp EE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred Ee--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC
Confidence 87 5789999998887665443221
Q ss_pred ------------CcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 013184 321 ------------DFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVH 388 (448)
Q Consensus 321 ------------~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~ 388 (448)
..+.+++|+|+|++++++ ++.|.+||+.+ .+.+..+..+ ..+.+++|+|+|++|++++.++.|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~-~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~ 304 (337)
T 1pby_B 229 GEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK-NASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLA 304 (337)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT-TEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEE
T ss_pred CCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC-CcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEE
Confidence 234468999999999988 68999999976 6666666543 4578999999999999999999999
Q ss_pred EEECCCCceeeeeecC
Q 013184 389 VYDAKNGFEKEQEIDF 404 (448)
Q Consensus 389 vwd~~~~~~~~~~~~~ 404 (448)
+||+.+++.+..+..+
T Consensus 305 v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 305 AYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEETTTCCEEEEEECG
T ss_pred EEECcCCcEEEEEEcC
Confidence 9999999887766544
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.82 E-value=2.8e-17 Score=157.20 Aligned_cols=243 Identities=14% Similarity=0.146 Sum_probs=162.5
Q ss_pred cceeeeCCCCeEEEecC----CeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEe-
Q 013184 136 RNLVWSTSKHDVYLMSH----FSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGG- 208 (448)
Q Consensus 136 r~l~~~~~~~~v~~~~~----~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~- 208 (448)
..+.+.+.+. +|+++. +.|.+|++.++....+..+..+.. .+..+++ ++++|++++
T Consensus 43 ~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~----------------~p~~~a~spdg~~l~~~~~ 105 (347)
T 3hfq_A 43 TYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGT----------------PPAYVAVDEARQLVYSANY 105 (347)
T ss_dssp CCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESC----------------CCSEEEEETTTTEEEEEET
T ss_pred ceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCC----------------CCEEEEECCCCCEEEEEeC
Confidence 3455666666 777653 579999986665544443221111 2344444 888888877
Q ss_pred CCCeEEEEEcCCCCcee-EEEeecCCC--------CceeeEEEEeCCCCCeeEEEEeCCCcEEEEecC-CceEEEE--ee
Q 013184 209 FQGELICKYLDQPGVSF-CSRTTYDEN--------AITNAVEIYNSPSGGIHFMASNNDCGVRDFDME-RFQLSKH--FS 276 (448)
Q Consensus 209 ~dg~i~vw~~~~~~~~~-~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~-~~~~~~~--~~ 276 (448)
.++.|.+|++...+... ......... ..+..+. ++|+|. ++++...++.|++|++. ++++... +.
T Consensus 106 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~--~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~ 182 (347)
T 3hfq_A 106 HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTD--LTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLT 182 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEE--ECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEE--ECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEE
Confidence 78999999997544322 222211111 1233444 499998 77777778999999998 5554332 22
Q ss_pred --cCCCeeEEEECCCCCEEEEE-ecCCcEEEEECCC--Cce--eEeeecCC------CcEEEEEEcCCCCEE-EEEeCCC
Q 013184 277 --FPWPVNHTSLSPDGKLLVIV-GDNPEGILVDSQT--GKA--IMPLCGHL------DFSFASAWHPDGRIF-ATGNQDK 342 (448)
Q Consensus 277 --~~~~v~~~~~sp~~~~l~~~-~~d~~i~i~d~~~--~~~--~~~l~~h~------~~v~~~~~~p~g~~l-~s~~~d~ 342 (448)
....+..++|+|+|++++++ ..++.|.+|++.. ++. +..+.... ..+..++|+|+|++| ++...++
T Consensus 183 ~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~ 262 (347)
T 3hfq_A 183 MEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYN 262 (347)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTT
T ss_pred cCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCC
Confidence 23467899999999976665 5678999998764 543 22333222 458899999999977 4556689
Q ss_pred cEEEEEccCCC--cceEEEccCCCCeEEEEEcCCCCEEEEEeCC-CeEEEE--ECCCCcee
Q 013184 343 TCRVWDVRNLS--KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA-DFVHVY--DAKNGFEK 398 (448)
Q Consensus 343 ~i~iwd~~~~~--~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d-~~v~vw--d~~~~~~~ 398 (448)
.|.+|++...+ ..+..+..+...+..++|+|+|++|++++.+ +.|.+| |..+++..
T Consensus 263 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 263 TLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 99999996322 3445566666678999999999999888765 899999 55566544
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=6e-19 Score=181.23 Aligned_cols=224 Identities=12% Similarity=0.021 Sum_probs=161.7
Q ss_pred eeeEEEEe--cCCEEEEEeC-CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeC---CCcEEEEe
Q 013184 192 TQVSTLAV--RDNLLIAGGF-QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNN---DCGVRDFD 265 (448)
Q Consensus 192 ~~i~~l~~--~~~~lvsg~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~---dg~v~iwd 265 (448)
.+|.++++ +|+.||+++. +|++.+|.++.... .+++.++...+..+. ++|+ .++++++. +...++|.
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~---~~lt~~~~~~~~~~~--~spd--~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET---VKLNREPINSVLDPH--YGVG--RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE---EECCSSCCSEECEEC--TTCS--EEEEEEECSTTSCCEEEEE
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCc---Eeeeccccccccccc--CCCC--eEEEEeccCCCCcceEEEE
Confidence 35777766 9999999887 99999999854332 344444434444554 4787 47776664 45456654
Q ss_pred cCC---ceEEEEeecCCCeeEEEECCCCCE-EEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCC
Q 013184 266 MER---FQLSKHFSFPWPVNHTSLSPDGKL-LVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQD 341 (448)
Q Consensus 266 ~~~---~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d 341 (448)
+.. +... .+.....+...+|+|+|+. +++.+.++.+.+||+.+++.......+. .+++|+|||++|++++.+
T Consensus 95 ~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~ 170 (582)
T 3o4h_A 95 VNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFF 170 (582)
T ss_dssp EETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEE
T ss_pred EeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEc
Confidence 422 2222 3333334567788988864 3344445566699999987665554333 789999999999988877
Q ss_pred ----CcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeeeeecCcCceEEEE---
Q 013184 342 ----KTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD--FVHVYDAKNGFEKEQEIDFFGEISGMT--- 412 (448)
Q Consensus 342 ----~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~--- 412 (448)
+.|++||+.+ ++ ...+..|.+.+..++|||||++|+++..++ .|++||+.++... .+..|...+.+++
T Consensus 171 ~~~~~~i~~~d~~~-g~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~ 247 (582)
T 3o4h_A 171 GGGRVSLFTSNLSS-GG-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTA 247 (582)
T ss_dssp ETTEEEEEEEETTT-CC-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSE
T ss_pred CCCCeEEEEEcCCC-CC-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcc
Confidence 7899999875 33 457788888999999999999999888888 8999999988877 6666777777777
Q ss_pred -----EccCCCeEEEEEecCCc
Q 013184 413 -----FSPDTEALFIGVWDRTY 429 (448)
Q Consensus 413 -----fspdg~~L~~~~~D~~~ 429 (448)
|+|||..+++++.|+++
T Consensus 248 ~~~~~~spdg~~~~~~~~~g~~ 269 (582)
T 3o4h_A 248 ITWLGYLPDGRLAVVARREGRS 269 (582)
T ss_dssp EEEEEECTTSCEEEEEEETTEE
T ss_pred ccceeEcCCCcEEEEEEcCCcE
Confidence 99999888888887653
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=2.6e-17 Score=156.85 Aligned_cols=231 Identities=15% Similarity=0.154 Sum_probs=162.0
Q ss_pred CCeEEEe--cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEE-EEEeCCCeEEEEEc
Q 013184 144 KHDVYLM--SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLL-IAGGFQGELICKYL 218 (448)
Q Consensus 144 ~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~l-vsg~~dg~i~vw~~ 218 (448)
.+.+|++ .+++|.+||..+++....+.+.+... +..+++ +++++ +++..++.|.+|++
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-----------------~~~~~~s~dg~~~~v~~~~~~~i~~~d~ 72 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFG-----------------PGTAMMAPDNRTAYVLNNHYGDIYGIDL 72 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCS-----------------SCEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCC-----------------CceeEECCCCCEEEEEeCCCCcEEEEeC
Confidence 3445544 46789999998876665555432111 234444 77754 56667899999999
Q ss_pred CCCCceeEEEeecCC-----CCceeeEEEEeCCCCCeeEEEEeCC------------CcEEEEecCCce---EEEEeecC
Q 013184 219 DQPGVSFCSRTTYDE-----NAITNAVEIYNSPSGGIHFMASNND------------CGVRDFDMERFQ---LSKHFSFP 278 (448)
Q Consensus 219 ~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~s~d------------g~v~iwd~~~~~---~~~~~~~~ 278 (448)
.+..... .+...+ ...+..+.+ +|+|. ++++++.+ +.|.+||+.+++ .+..+.++
T Consensus 73 ~t~~~~~--~~~~~~~~~~~~~~~~~~~~--spdg~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 147 (349)
T 1jmx_B 73 DTCKNTF--HANLSSVPGEVGRSMYSFAI--SPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP 147 (349)
T ss_dssp TTTEEEE--EEESCCSTTEEEECSSCEEE--CTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC
T ss_pred CCCcEEE--EEEcccccccccccccceEE--CCCCC-EEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC
Confidence 8765332 222121 111345555 89987 55555544 899999998844 34455566
Q ss_pred CCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCC--------------------------------------
Q 013184 279 WPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHL-------------------------------------- 320 (448)
Q Consensus 279 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-------------------------------------- 320 (448)
..+.+++|+|+|+ +++++. .|.+||+.+++.+..+..+.
T Consensus 148 ~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 224 (349)
T 1jmx_B 148 RQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 224 (349)
T ss_dssp SSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----
T ss_pred CcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcC
Confidence 6789999999999 655543 49999999988776654321
Q ss_pred ------------------------------CcEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEE
Q 013184 321 ------------------------------DFSFASAWHP-DGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSI 369 (448)
Q Consensus 321 ------------------------------~~v~~~~~~p-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l 369 (448)
..+..++|+| +|++++++ ++.|.+||+.+ .+.+..+... ..+.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~-~~~~~~~~~~-~~~~~~ 300 (349)
T 1jmx_B 225 DPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ-RKLIKAANLD-HTYYCV 300 (349)
T ss_dssp --CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT-TEEEEEEECS-SCCCEE
T ss_pred CccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc-CeEEEEEcCC-CCccce
Confidence 1345678889 99999988 88999999976 6666666533 457799
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeeeeec
Q 013184 370 RFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEID 403 (448)
Q Consensus 370 ~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 403 (448)
+|+|+|++|++++.++.|++||+.+++.+..+..
T Consensus 301 ~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 301 AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp EECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 9999999999888899999999999887766554
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=1.3e-17 Score=161.90 Aligned_cols=278 Identities=11% Similarity=0.056 Sum_probs=183.9
Q ss_pred ceeeeCCCCeEEEecC--C--eEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCe
Q 013184 137 NLVWSTSKHDVYLMSH--F--SIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGE 212 (448)
Q Consensus 137 ~l~~~~~~~~v~~~~~--~--~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~ 212 (448)
+..|++++..|++.++ + .|.+|++.++....+... +..+. .-..++.+++.|+.++.++.
T Consensus 40 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~--~~~~~--------------~~~~~spdg~~l~~~~~~~~ 103 (388)
T 3pe7_A 40 QKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG--RGDNT--------------FGGFLSPDDDALFYVKDGRN 103 (388)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS--SCBCS--------------SSCEECTTSSEEEEEETTTE
T ss_pred CccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC--CCCCc--------------cceEEcCCCCEEEEEeCCCe
Confidence 4568888888887754 3 388889877654444322 21110 01235559999999999999
Q ss_pred EEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEE----------------------EeCCCcEEEEecCCce
Q 013184 213 LICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMA----------------------SNNDCGVRDFDMERFQ 270 (448)
Q Consensus 213 i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s----------------------~s~dg~v~iwd~~~~~ 270 (448)
|.+|++.+...... ...+........+..++++. +++. ...+..|.+||+.+++
T Consensus 104 l~~~d~~~g~~~~~---~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (388)
T 3pe7_A 104 LMRVDLATLEENVV---YQVPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE 179 (388)
T ss_dssp EEEEETTTCCEEEE---EECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred EEEEECCCCcceee---eechhhcccccceeECCCCC-eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence 99999988764322 22333444444455588887 3432 2245789999999998
Q ss_pred EEEEeecCCCeeEEEECC-CCCEEEEEecC------CcEEEEECCCCceeEeeecCC--CcEEEEEEcCCCCEEEEEeC-
Q 013184 271 LSKHFSFPWPVNHTSLSP-DGKLLVIVGDN------PEGILVDSQTGKAIMPLCGHL--DFSFASAWHPDGRIFATGNQ- 340 (448)
Q Consensus 271 ~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d------~~i~i~d~~~~~~~~~l~~h~--~~v~~~~~~p~g~~l~s~~~- 340 (448)
......+...+..++|+| +|+.|+.+... ..|.++|...++. ..+..+. ..+..++|+|||+.|+..+.
T Consensus 180 ~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 180 STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecC
Confidence 877777778899999999 99999887753 3788888776554 3444444 35778899999997765443
Q ss_pred CC----cEEEEEccCCCc--ceEEEccCCC---CeEEEEEcCCCCEEEEE---------eCCCeEEEEECCCCceeeeee
Q 013184 341 DK----TCRVWDVRNLSK--SVAVLKGNLG---AIRSIRFTSDGNFMAMA---------EPADFVHVYDAKNGFEKEQEI 402 (448)
Q Consensus 341 d~----~i~iwd~~~~~~--~~~~~~~~~~---~v~~l~~sp~g~~l~s~---------~~d~~v~vwd~~~~~~~~~~~ 402 (448)
++ .|.+||+.+ ++ .+..+.++.. ....++|+|+|+.|+.. ..+..|++||+.+++. ..+.
T Consensus 259 ~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~ 336 (388)
T 3pe7_A 259 KGSPDRFIYSADPET-LENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVA 336 (388)
T ss_dssp TTCCCEEEEEECTTT-CCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEE
T ss_pred CCCCcceEEEEecCC-CceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEec
Confidence 22 399999976 33 2223332100 01123799999988864 4456899999988654 4555
Q ss_pred cCcC-----------ceEEEEEccCCCeEEEEEecCCcceEEEEec
Q 013184 403 DFFG-----------EISGMTFSPDTEALFIGVWDRTYGSLLQYNR 437 (448)
Q Consensus 403 ~~~~-----------~v~~~~fspdg~~L~~~~~D~~~~~ll~~~~ 437 (448)
.+.. .+.+++|+|||+.|+.++.......++.+..
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 337 RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 5555 5788999999999998876554455555543
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=1e-16 Score=154.78 Aligned_cols=229 Identities=11% Similarity=0.041 Sum_probs=156.3
Q ss_pred eEEEEe--cCCEEEEEeCCCeEEEEEcC-CCCceeEEEeecCCCCceeeEEEEeCCCCCe-eEEEEe-------------
Q 013184 194 VSTLAV--RDNLLIAGGFQGELICKYLD-QPGVSFCSRTTYDENAITNAVEIYNSPSGGI-HFMASN------------- 256 (448)
Q Consensus 194 i~~l~~--~~~~lvsg~~dg~i~vw~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s------------- 256 (448)
+..+++ ++++|++++.+ .|.+|++. ........... .. +.+..+. ++|+|+. ++++++
T Consensus 42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~-~~-g~~~~~~--~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP-IG-GHPRAND--ADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp CSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE-CC-SSGGGGC--TTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee-cC-CCCccEE--ECCCCCEEEEEEecCCcceeccceeec
Confidence 345555 88989988887 99999997 44322111111 11 1233443 4898874 344553
Q ss_pred CCCcEEEEecC-CceEEEEee-----cCCCeeEEEECCCCCEEEEEe-cCCcEEEEECC-CCcee--Eeee--cCCCcEE
Q 013184 257 NDCGVRDFDME-RFQLSKHFS-----FPWPVNHTSLSPDGKLLVIVG-DNPEGILVDSQ-TGKAI--MPLC--GHLDFSF 324 (448)
Q Consensus 257 ~dg~v~iwd~~-~~~~~~~~~-----~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~-~~~~~--~~l~--~h~~~v~ 324 (448)
.++.+.+|++. .+++...+. +...+.+++|+|+|++++++. .++.|.+|++. +++.. ..+. .|...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 68999999997 465544333 356789999999999888776 36799999998 77653 3343 2456789
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEEccC-CCcce---EEEc-------cCCC------CeEEEE-EcCCCCEEEEEeCC-
Q 013184 325 ASAWHPDGRIFATGNQ-DKTCRVWDVRN-LSKSV---AVLK-------GNLG------AIRSIR-FTSDGNFMAMAEPA- 384 (448)
Q Consensus 325 ~~~~~p~g~~l~s~~~-d~~i~iwd~~~-~~~~~---~~~~-------~~~~------~v~~l~-~sp~g~~l~s~~~d- 384 (448)
.++|+|+|+++++++. ++.|.+|++.. .++.. ..+. ++.. .+..++ |+|+|++|+++..+
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999999888775 68999998753 13321 1222 1121 478999 99999998877643
Q ss_pred C-----eEEEEECC-CCceeee---eecCcCceEEEEEcc---CCCeEEEEEecC
Q 013184 385 D-----FVHVYDAK-NGFEKEQ---EIDFFGEISGMTFSP---DTEALFIGVWDR 427 (448)
Q Consensus 385 ~-----~v~vwd~~-~~~~~~~---~~~~~~~v~~~~fsp---dg~~L~~~~~D~ 427 (448)
+ .|.+|++. +++.... ...+...+.+++|+| ||++|++++.+.
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~ 331 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE 331 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCC
Confidence 2 89999996 5554331 223445678899999 899999998764
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.79 E-value=2.6e-18 Score=180.83 Aligned_cols=275 Identities=10% Similarity=-0.002 Sum_probs=183.8
Q ss_pred cceeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeC----
Q 013184 136 RNLVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGF---- 209 (448)
Q Consensus 136 r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~---- 209 (448)
+++.|++....++...++.|++|+..++....++...... ...+.++++ +|++|++++.
T Consensus 19 ~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~---------------~~~~~~~~~SpDg~~la~~~~~~~~ 83 (719)
T 1z68_A 19 FFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMK---------------SVNASNYGLSPDRQFVYLESDYSKL 83 (719)
T ss_dssp CCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHH---------------TTTCSEEEECTTSSEEEEEEEEEEC
T ss_pred CccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEcccccc---------------ccceeeEEECCCCCeEEEEecCcee
Confidence 3556777775444456788999999887766655322100 001455555 9999998876
Q ss_pred -----CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee--cCCC--
Q 013184 210 -----QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS--FPWP-- 280 (448)
Q Consensus 210 -----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~-- 280 (448)
++.|.+|++.+........+ ...+..+.| +|+|+ .|+.+. ++.|++|++.+++...... +...
T Consensus 84 ~~~s~~~~i~~~d~~~g~~~~~~~l----~~~~~~~~~--SPDG~-~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~ 155 (719)
T 1z68_A 84 WRYSYTATYYIYDLSNGEFVRGNEL----PRPIQYLCW--SPVGS-KLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIF 155 (719)
T ss_dssp SSSCEEEEEEEEETTTTEECCSSCC----CSSBCCEEE--CSSTT-CEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEE
T ss_pred EEeecceEEEEEECCCCccccceec----CcccccceE--CCCCC-EEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeE
Confidence 79999999987643100111 122445555 99998 566554 7899999998887655432 2221
Q ss_pred ---------------eeEEEECCCCCEEEEEecCC----------------------------------cEEEEECCCCc
Q 013184 281 ---------------VNHTSLSPDGKLLVIVGDNP----------------------------------EGILVDSQTGK 311 (448)
Q Consensus 281 ---------------v~~~~~sp~~~~l~~~~~d~----------------------------------~i~i~d~~~~~ 311 (448)
..+++|||||+.|++++.+. .|++||+.+++
T Consensus 156 ~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~ 235 (719)
T 1z68_A 156 NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA 235 (719)
T ss_dssp ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH
T ss_pred cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC
Confidence 25899999999999987552 78899999887
Q ss_pred ee--------EeeecCCCcEEEEEEcCCCCEEEEEeCC----CcEEEEE----ccCCCcceEEE----ccCCCCeE----
Q 013184 312 AI--------MPLCGHLDFSFASAWHPDGRIFATGNQD----KTCRVWD----VRNLSKSVAVL----KGNLGAIR---- 367 (448)
Q Consensus 312 ~~--------~~l~~h~~~v~~~~~~p~g~~l~s~~~d----~~i~iwd----~~~~~~~~~~~----~~~~~~v~---- 367 (448)
.+ ..+.+|...+..++|+||++++++.... ..|.+|| +.+ +++...+ ..|.+.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 314 (719)
T 1z68_A 236 YVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEHIEESRTGWAGGFFV 314 (719)
T ss_dssp HHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEEEEECSSSCSSSSSC
T ss_pred ccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceEEEEecccccCCceEccccC
Confidence 53 2234688889999999998877774432 2488889 654 3433333 35666666
Q ss_pred -EEEEcCCCCEEEE--EeCCC--eEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEec----CCcceEEEEe
Q 013184 368 -SIRFTSDGNFMAM--AEPAD--FVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWD----RTYGSLLQYN 436 (448)
Q Consensus 368 -~l~~sp~g~~l~s--~~~d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D----~~~~~ll~~~ 436 (448)
.+.|+|+|+.|+. +..++ .|++||+.++. ...+..+...+.++.++ +++.|+..+.+ .....+....
T Consensus 315 ~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 315 STPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp CCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred CccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 8899999996654 44454 67788887765 44555556678888888 88888888766 3334455443
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=182.85 Aligned_cols=215 Identities=12% Similarity=0.111 Sum_probs=152.8
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCC---ceeeEEEEeCCCCCeeEEEEeC---------CCcEEEEecC
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENA---ITNAVEIYNSPSGGIHFMASNN---------DCGVRDFDME 267 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~s~---------dg~v~iwd~~ 267 (448)
++. ++..+.+|.|++|++.+.... .+..++.. .+..+.+ +|+|+ +|++++. ++.|++||+.
T Consensus 26 dg~-~~~~~~d~~i~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~--SpDg~-~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 26 GQE-YLHQSADNNIVLYNIETGQSY---TILSNRTMKSVNASNYGL--SPDRQ-FVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp SSE-EEEECTTSCEEEEESSSCCEE---EEECHHHHHTTTCSEEEE--CTTSS-EEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred CCe-EEEEcCCCCEEEEEcCCCcEE---EEEccccccccceeeEEE--CCCCC-eEEEEecCceeEEeecceEEEEEECC
Confidence 665 444556999999999887643 22222211 1345555 99998 5666554 6899999999
Q ss_pred CceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEee-ecCCCcE-----------------EEEEEc
Q 013184 268 RFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPL-CGHLDFS-----------------FASAWH 329 (448)
Q Consensus 268 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l-~~h~~~v-----------------~~~~~~ 329 (448)
+++.+........+..++|||+|+.|+++. ++.|++|++.+++..... .++...+ .+++|+
T Consensus 99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS 177 (719)
T 1z68_A 99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS 177 (719)
T ss_dssp TTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred CCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC
Confidence 988732222346689999999999999886 679999999988765432 2333333 379999
Q ss_pred CCCCEEEEEeCCC----------------------------------cEEEEEccCCCcce--------EEEccCCCCeE
Q 013184 330 PDGRIFATGNQDK----------------------------------TCRVWDVRNLSKSV--------AVLKGNLGAIR 367 (448)
Q Consensus 330 p~g~~l~s~~~d~----------------------------------~i~iwd~~~~~~~~--------~~~~~~~~~v~ 367 (448)
|||++|++++.|. .|++||+.. +... ..+.+|...+.
T Consensus 178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~ 256 (719)
T 1z68_A 178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIASSDYYFS 256 (719)
T ss_dssp TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCCCHHHHTSCEEEE
T ss_pred CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-CCccceeEccCCccCCCCcceEE
Confidence 9999999987652 788999975 4332 11335777899
Q ss_pred EEEEcCCCCEEEEEeCC----CeEEEEE----CCCCceeeee----ecCcCceE-----EEEEccCCCeEEEE
Q 013184 368 SIRFTSDGNFMAMAEPA----DFVHVYD----AKNGFEKEQE----IDFFGEIS-----GMTFSPDTEALFIG 423 (448)
Q Consensus 368 ~l~~sp~g~~l~s~~~d----~~v~vwd----~~~~~~~~~~----~~~~~~v~-----~~~fspdg~~L~~~ 423 (448)
+++|||||+++++.... ..|++|| +.+++....+ ..|.+.+. .++|+|||+.|+..
T Consensus 257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 329 (719)
T 1z68_A 257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI 329 (719)
T ss_dssp EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEE
Confidence 99999999877775432 2588999 8777655444 35666676 89999999987764
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.77 E-value=3.7e-17 Score=172.71 Aligned_cols=237 Identities=14% Similarity=0.133 Sum_probs=161.6
Q ss_pred eEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceee--EEEEeCCCCCeeEEEEeCC---------Cc
Q 013184 194 VSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNA--VEIYNSPSGGIHFMASNND---------CG 260 (448)
Q Consensus 194 i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~s~s~d---------g~ 260 (448)
..++++ ++.+++++ +|+|++|++.++.... .+..+....... -.+.++|+|+ .|+.++.+ +.
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSV--FLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEE--EECTTTTTTCCSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEE--EEechhhhhhcccccceEECCCCC-EEEEEECCeeeEEEccceE
Confidence 345566 77777776 9999999998876432 222222122111 1234599998 56666655 56
Q ss_pred EEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEe-eecCCCcE----------------
Q 013184 261 VRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMP-LCGHLDFS---------------- 323 (448)
Q Consensus 261 v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~-l~~h~~~v---------------- 323 (448)
+.+||+.++++.....+...+..++|||||+.||.+. ++.|++|++.+++..+. ..++...+
T Consensus 94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 7799999998776555788899999999999999885 57999999988875542 22333333
Q ss_pred -EEEEEcCCCCEEEEEeCCC------------------------------------cEEEEEccC---CCc-ceEEEcc-
Q 013184 324 -FASAWHPDGRIFATGNQDK------------------------------------TCRVWDVRN---LSK-SVAVLKG- 361 (448)
Q Consensus 324 -~~~~~~p~g~~l~s~~~d~------------------------------------~i~iwd~~~---~~~-~~~~~~~- 361 (448)
.++.|||||++||.++.|. +|++||+.+ ... ....+..
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 2489999999999875332 477888864 221 3334432
Q ss_pred -----CCCCeEEEEEcCCCCEEEEEeCC----CeEEEEECCCCc----ee--eee--ecCcCceE-----EEEEccCCCe
Q 013184 362 -----NLGAIRSIRFTSDGNFMAMAEPA----DFVHVYDAKNGF----EK--EQE--IDFFGEIS-----GMTFSPDTEA 419 (448)
Q Consensus 362 -----~~~~v~~l~~sp~g~~l~s~~~d----~~v~vwd~~~~~----~~--~~~--~~~~~~v~-----~~~fspdg~~ 419 (448)
+...+..++|||||+.++..... ..|++||+.+++ +. .++ ..+.+.|. +++|+|||+.
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~ 332 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS 332 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence 66779999999999977765432 379999999887 22 222 34555544 7899999998
Q ss_pred EE-EEEecCCcceEEEEe
Q 013184 420 LF-IGVWDRTYGSLLQYN 436 (448)
Q Consensus 420 L~-~~~~D~~~~~ll~~~ 436 (448)
|+ ..+.+.....|..+.
T Consensus 333 l~~~~s~~~G~~~l~~~~ 350 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQ 350 (740)
T ss_dssp EEEEEECTTSCEEEEEEE
T ss_pred EEEEEEcCCCceEEEEEE
Confidence 88 666554445555544
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=2.2e-16 Score=153.34 Aligned_cols=277 Identities=11% Similarity=0.045 Sum_probs=178.9
Q ss_pred cceeeeCCCCeEEEecC----CeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCC
Q 013184 136 RNLVWSTSKHDVYLMSH----FSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQG 211 (448)
Q Consensus 136 r~l~~~~~~~~v~~~~~----~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg 211 (448)
..+.+++.+..+++..+ ..|.+|+..++....+.. ++... .....++.+++.|+.++.++
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~--~~~~~--------------~~~~~~spdg~~l~~~~~~~ 102 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE--GKGDN--------------TFGGFISTDERAFFYVKNEL 102 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC--SSCBC--------------TTTCEECTTSSEEEEEETTT
T ss_pred ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec--CCCCc--------------cccceECCCCCEEEEEEcCC
Confidence 44567788888777643 268888977654333221 11100 00123455899999999999
Q ss_pred eEEEEEcCCCCceeEEEeecCCCCceee---EE--------------EEeCCCCCeeEEEE----eCCCcEEEEecCCce
Q 013184 212 ELICKYLDQPGVSFCSRTTYDENAITNA---VE--------------IYNSPSGGIHFMAS----NNDCGVRDFDMERFQ 270 (448)
Q Consensus 212 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~---v~--------------~~~~~~~~~~l~s~----s~dg~v~iwd~~~~~ 270 (448)
.|.+|++......... ..+...... +. ..++|++..+++.. ..+..|++||+.+++
T Consensus 103 ~l~~~d~~~~~~~~~~---~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (396)
T 3c5m_A 103 NLMKVDLETLEEQVIY---TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE 179 (396)
T ss_dssp EEEEEETTTCCEEEEE---ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC
T ss_pred cEEEEECCCCCcEEEE---ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc
Confidence 9999999876533222 111111101 10 12356665333222 456789999999988
Q ss_pred EEEEeecCCCeeEEEECC-CCCEEEEEecC------CcEEEEECCCCceeEeeecC-CCcEEEEEEcCCCCEEEEEeCC-
Q 013184 271 LSKHFSFPWPVNHTSLSP-DGKLLVIVGDN------PEGILVDSQTGKAIMPLCGH-LDFSFASAWHPDGRIFATGNQD- 341 (448)
Q Consensus 271 ~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d------~~i~i~d~~~~~~~~~l~~h-~~~v~~~~~~p~g~~l~s~~~d- 341 (448)
......+...+..+.|+| +++.|+.++.+ ..|.+||+.+++........ ...+..++|+|+|++|+.++.+
T Consensus 180 ~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 180 LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCC
Confidence 777777778899999999 88877776643 36888998766543333311 2357789999999987776543
Q ss_pred ----CcEEEEEccCCCcceEEEccCCCCeEEEEEcC-CCCEEEEEe----------------CCCeEEEEECCCCceeee
Q 013184 342 ----KTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTS-DGNFMAMAE----------------PADFVHVYDAKNGFEKEQ 400 (448)
Q Consensus 342 ----~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~s~~----------------~d~~v~vwd~~~~~~~~~ 400 (448)
+.|.+||+.+ ++... +....+ .. +.|+| +|++|++++ .+..|++||+.++.. ..
T Consensus 260 ~~~~~~l~~~d~~~-g~~~~-l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~ 334 (396)
T 3c5m_A 260 GQTDRVIYKANPET-LENEE-VMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QK 334 (396)
T ss_dssp TTCCEEEEEECTTT-CCEEE-EEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CE
T ss_pred CCccceEEEEECCC-CCeEE-eeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EE
Confidence 4499999975 43322 222222 33 89999 999888765 246899999988764 34
Q ss_pred eecCcC-----------ceEEEEEccCCCeEEEEEecCCcceEEEEe
Q 013184 401 EIDFFG-----------EISGMTFSPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 401 ~~~~~~-----------~v~~~~fspdg~~L~~~~~D~~~~~ll~~~ 436 (448)
+..+.. .+..++|+|||+.|+.++.+.....++.+.
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 335 LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 444443 256789999999999888765545566655
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.74 E-value=2e-15 Score=145.62 Aligned_cols=220 Identities=9% Similarity=0.048 Sum_probs=147.8
Q ss_pred EEEEEeCC--CeEEEEEcCCCCcee--EEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecC-CceEEEEeec
Q 013184 203 LLIAGGFQ--GELICKYLDQPGVSF--CSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDME-RFQLSKHFSF 277 (448)
Q Consensus 203 ~lvsg~~d--g~i~vw~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~~ 277 (448)
.|++|+.. +.|.+|.++...... ...........+..+.+ +|+|. +|++++.+ .|.+|++. ++++.....+
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~--spdg~-~l~~~~~~-~v~~~~~~~~g~~~~~~~~ 79 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTF--DHERK-NIYGAAMK-KWSSFAVKSPTEIVHEASH 79 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEE--CTTSS-EEEEEEBT-EEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEE--CCCCC-EEEEEccc-eEEEEEECCCCCEEEeeEe
Confidence 45666653 568888775433222 11111112223345555 89987 67777777 99999997 7776654442
Q ss_pred --CCCeeEEEECCCCCE--EEEEe-------------cCCcEEEEECC-CCceeEeee----cCCCcEEEEEEcCCCCEE
Q 013184 278 --PWPVNHTSLSPDGKL--LVIVG-------------DNPEGILVDSQ-TGKAIMPLC----GHLDFSFASAWHPDGRIF 335 (448)
Q Consensus 278 --~~~v~~~~~sp~~~~--l~~~~-------------~d~~i~i~d~~-~~~~~~~l~----~h~~~v~~~~~~p~g~~l 335 (448)
.+.+.+++|+|+|+. ++++. .++.+.+|++. .++....+. .+...+.+++|+|+|++|
T Consensus 80 ~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l 159 (365)
T 1jof_A 80 PIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYL 159 (365)
T ss_dssp ECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred ecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEE
Confidence 244677999999995 44443 68899999987 466554443 245678999999999988
Q ss_pred EEEeC-CCcEEEEEcc-CCCcc--eEEEc--cCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECC--CCceee---eeec
Q 013184 336 ATGNQ-DKTCRVWDVR-NLSKS--VAVLK--GNLGAIRSIRFTSDGNFMAMAEP-ADFVHVYDAK--NGFEKE---QEID 403 (448)
Q Consensus 336 ~s~~~-d~~i~iwd~~-~~~~~--~~~~~--~~~~~v~~l~~sp~g~~l~s~~~-d~~v~vwd~~--~~~~~~---~~~~ 403 (448)
++++. ++.|++|++. + ++. +..+. .+...++.++|+|+|++|++++. ++.|.+|++. +++... .+..
T Consensus 160 ~~~~~~~~~v~~~~~~~~-g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 238 (365)
T 1jof_A 160 YSADLTANKLWTHRKLAS-GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL 238 (365)
T ss_dssp EEEETTTTEEEEEEECTT-SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred EEEcCCCCEEEEEEECCC-CCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc
Confidence 87764 6789999997 4 333 23333 23566899999999999988775 6899999765 454321 1211
Q ss_pred -------CcC------ceEEEE-EccCCCeEEEEEecC
Q 013184 404 -------FFG------EISGMT-FSPDTEALFIGVWDR 427 (448)
Q Consensus 404 -------~~~------~v~~~~-fspdg~~L~~~~~D~ 427 (448)
+.. .+.+++ |+|||++|+++..+.
T Consensus 239 ~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred CCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 111 588999 999999998876543
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=1.3e-14 Score=134.78 Aligned_cols=224 Identities=13% Similarity=0.191 Sum_probs=158.7
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeec-----CCCCceeeEEEEeCCCCCeeEEEEeC-CCcEEEE
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTY-----DENAITNAVEIYNSPSGGIHFMASNN-DCGVRDF 264 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~s~s~-dg~v~iw 264 (448)
...++++ +++++++...++.|.+|+... ... ..+.. .+...+..+.+. .+++ .++++... ++.|++|
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~--~~~~~~~~~~~~~~~p~~i~~~-~~~g-~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFK--FQFGECGKRDSQLLYPNRVAVV-RNSG-DIIVTERSPTHQIQIY 105 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEE--EEECCBSSSTTCBSSEEEEEEE-TTTT-EEEEEECGGGCEEEEE
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCCC-cEE--EEecccCCCcccccCceEEEEE-cCCC-eEEEEcCCCCCEEEEE
Confidence 3566776 678888888999999999763 221 12211 111233444441 3444 35555533 7899999
Q ss_pred ecCCceEEEEee--cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeee--cCCCcEEEEEEcCCCCEEEEEeC
Q 013184 265 DMERFQLSKHFS--FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLC--GHLDFSFASAWHPDGRIFATGNQ 340 (448)
Q Consensus 265 d~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~--~h~~~v~~~~~~p~g~~l~s~~~ 340 (448)
+ .+++.+..+. ....+..++++|+|+++++...++.|.+||. .++.+..+. ++...+..++++|+|+++++...
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 9 5566666665 3456899999999998877777889999995 456666554 35567899999999998888788
Q ss_pred CCcEEEEEccCCCcceEEEccC--CCCeEEEEEcCCCCEEEEEeCCC-eEEEEECCCCceeeeeecCc--CceEEEEEcc
Q 013184 341 DKTCRVWDVRNLSKSVAVLKGN--LGAIRSIRFTSDGNFMAMAEPAD-FVHVYDAKNGFEKEQEIDFF--GEISGMTFSP 415 (448)
Q Consensus 341 d~~i~iwd~~~~~~~~~~~~~~--~~~v~~l~~sp~g~~l~s~~~d~-~v~vwd~~~~~~~~~~~~~~--~~v~~~~fsp 415 (448)
++.|++||.. +..+..+..+ ...+..++++|+|+++++...++ .|.+|+. +++.+..+..+. ..+.+++++|
T Consensus 184 ~~~i~~~~~~--g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~ 260 (286)
T 1q7f_A 184 AHCVKVFNYE--GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD 260 (286)
T ss_dssp GTEEEEEETT--CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET
T ss_pred CCEEEEEcCC--CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECC
Confidence 8999999984 5566666543 35788999999999888887776 9999995 566665555443 3478999999
Q ss_pred CCCeEEEEEecC
Q 013184 416 DTEALFIGVWDR 427 (448)
Q Consensus 416 dg~~L~~~~~D~ 427 (448)
+|+.+++ +.|+
T Consensus 261 ~g~l~vs-~~~~ 271 (286)
T 1q7f_A 261 DGSVVLA-SKDY 271 (286)
T ss_dssp TTEEEEE-ETTT
T ss_pred CCcEEEE-CCCC
Confidence 9975555 5553
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.71 E-value=6.7e-15 Score=155.44 Aligned_cols=267 Identities=12% Similarity=0.064 Sum_probs=172.7
Q ss_pred ccceeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceee--EEEEecCCEEEEEeCC--
Q 013184 135 LRNLVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQV--STLAVRDNLLIAGGFQ-- 210 (448)
Q Consensus 135 ~r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i--~~l~~~~~~lvsg~~d-- 210 (448)
..++.|.+.+..++. +++.|++|++.++....++. +|.... ..... .+++.++++|+.++.+
T Consensus 19 ~~~~~w~~dg~~~~~-~~~~i~~~~~~~~~~~~~~~--~~~~~~-----------~~~~~~~~~~Spdg~~l~~~~~~~~ 84 (740)
T 4a5s_A 19 LYSLRWISDHEYLYK-QENNILVFNAEYGNSSVFLE--NSTFDE-----------FGHSINDYSISPDGQFILLEYNYVK 84 (740)
T ss_dssp CCCEEECSSSEEEEE-ETTEEEEEETTTCCEEEEEC--TTTTTT-----------CCSCCCEEEECTTSSEEEEEEEEEE
T ss_pred ccccEECCCCcEEEE-cCCcEEEEECCCCceEEEEe--chhhhh-----------hcccccceEECCCCCEEEEEECCee
Confidence 345678887754544 48899999998887665543 332210 00122 3455699999998876
Q ss_pred -------CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee--cCCCe
Q 013184 211 -------GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS--FPWPV 281 (448)
Q Consensus 211 -------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v 281 (448)
|.+.+|++.+.... .+. .+........| +|+|+ .|+.+ .++.|++|++.+++..+... +...+
T Consensus 85 ~~r~~~~~~~~~~d~~~~~~~---~l~-~~~~~~~~~~~--SPdG~-~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~ 156 (740)
T 4a5s_A 85 QWRHSYTASYDIYDLNKRQLI---TEE-RIPNNTQWVTW--SPVGH-KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII 156 (740)
T ss_dssp CSSSCEEEEEEEEETTTTEEC---CSS-CCCTTEEEEEE--CSSTT-CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred eEEEccceEEEEEECCCCcEE---Ecc-cCCCcceeeEE--CCCCC-EEEEE-ECCeEEEEECCCCceEEEcCCCCccce
Confidence 66779999876532 222 23344445544 99998 55555 46899999998887554322 11112
Q ss_pred -----------------eEEEECCCCCEEEEEecCC------------------------------------cEEEEECC
Q 013184 282 -----------------NHTSLSPDGKLLVIVGDNP------------------------------------EGILVDSQ 308 (448)
Q Consensus 282 -----------------~~~~~sp~~~~l~~~~~d~------------------------------------~i~i~d~~ 308 (448)
..+.|||||+.||.++.|. .|.+||+.
T Consensus 157 ~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~ 236 (740)
T 4a5s_A 157 YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD 236 (740)
T ss_dssp EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETT
T ss_pred ecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECC
Confidence 3589999999999875321 47889998
Q ss_pred C---Cc--eeEeee------cCCCcEEEEEEcCCCCEEEEEeC----CCcEEEEEccCCCc----c--eEEE--ccCCCC
Q 013184 309 T---GK--AIMPLC------GHLDFSFASAWHPDGRIFATGNQ----DKTCRVWDVRNLSK----S--VAVL--KGNLGA 365 (448)
Q Consensus 309 ~---~~--~~~~l~------~h~~~v~~~~~~p~g~~l~s~~~----d~~i~iwd~~~~~~----~--~~~~--~~~~~~ 365 (448)
+ ++ ....+. +|...+..++|+|||+.++.... +..|.+||+.+ ++ + +..+ ..+.+.
T Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t-g~~~~~~~~~~~l~~~~~~~~ 315 (740)
T 4a5s_A 237 SLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE-SSGRWNCLVARQHIEMSTTGW 315 (740)
T ss_dssp SCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-TTTEEEECGGGCEEEECSSSC
T ss_pred CCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-CccccceeEEEEeeeccCCce
Confidence 8 73 223343 37788999999999996665432 33699999976 43 1 2222 445555
Q ss_pred eE-----EEEEcCCCCEEE-EEeC-CC--eEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEec
Q 013184 366 IR-----SIRFTSDGNFMA-MAEP-AD--FVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 366 v~-----~l~~sp~g~~l~-s~~~-d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D 426 (448)
|. .+.|+|||+.|+ ..+. +| .|++||+.++... ++......|..+.. +|++.|+..+..
T Consensus 316 v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~ 383 (740)
T 4a5s_A 316 VGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNE 383 (740)
T ss_dssp SSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESC
T ss_pred EccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEec
Confidence 54 789999999877 6653 33 6888998765543 44444555666543 557777665543
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=1.5e-14 Score=139.43 Aligned_cols=242 Identities=10% Similarity=-0.006 Sum_probs=155.4
Q ss_pred CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEe----------CCCeEEEEEcCCC
Q 013184 152 HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGG----------FQGELICKYLDQP 221 (448)
Q Consensus 152 ~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~----------~dg~i~vw~~~~~ 221 (448)
++.|.+||..+++....+... . .+-..++.++++|+++. .++.|.+|++.+.
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g--~----------------~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTA--F----------------NGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECC--E----------------EEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred cCeEEEEECCCCeEEEEecCC--C----------------CCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 458999998776654433221 1 12123344889888886 3678999998876
Q ss_pred CceeEEEeecC---CCCceeeEEEEeCCCCCeeEEEEeC-CCcEEEEecCCceEEEE-eecCCCeeEEEECCCC-CEEEE
Q 013184 222 GVSFCSRTTYD---ENAITNAVEIYNSPSGGIHFMASNN-DCGVRDFDMERFQLSKH-FSFPWPVNHTSLSPDG-KLLVI 295 (448)
Q Consensus 222 ~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~sp~~-~~l~~ 295 (448)
.......+... .......+.+ +|+|+.++++... ++.|.+||+.+++.+.. +..... ..+.+.|++ ..+++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~--spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~ 168 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQ--TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMT 168 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEE--CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEE
T ss_pred cEEEEEEcCccccccCCCcceEEE--CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEE
Confidence 54433322211 1123445555 9999844444333 68999999999998887 554322 113334432 33444
Q ss_pred EecCCcEEEEECCC-Ccee-------------------------------------------------Eeeec------C
Q 013184 296 VGDNPEGILVDSQT-GKAI-------------------------------------------------MPLCG------H 319 (448)
Q Consensus 296 ~~~d~~i~i~d~~~-~~~~-------------------------------------------------~~l~~------h 319 (448)
.+.||.+.+|+... ++.. ..+.. +
T Consensus 169 ~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~ 248 (361)
T 2oiz_A 169 ICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKA 248 (361)
T ss_dssp EETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHH
T ss_pred ECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccc
Confidence 44444444444322 2111 00000 0
Q ss_pred C----CcEEEEEEcCCCCEEEEEeC-----------CCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCC
Q 013184 320 L----DFSFASAWHPDGRIFATGNQ-----------DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA 384 (448)
Q Consensus 320 ~----~~v~~~~~~p~g~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d 384 (448)
. .....++++|+++.++++.. .++|.+||+.+ .+.+..+..+. +..++|+|+|++|++++.
T Consensus 249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~--p~~ia~spdg~~l~v~n~- 324 (361)
T 2oiz_A 249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD--ALSMTIDQQRNLMLTLDG- 324 (361)
T ss_dssp TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT--CCEEEEETTTTEEEEECS-
T ss_pred cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC--eeEEEECCCCCEEEEeCC-
Confidence 0 00112688999887776643 34799999987 78888888776 899999999999999887
Q ss_pred CeEEEEECCCC--ceeeeeecCcCceEEEEEccCCC
Q 013184 385 DFVHVYDAKNG--FEKEQEIDFFGEISGMTFSPDTE 418 (448)
Q Consensus 385 ~~v~vwd~~~~--~~~~~~~~~~~~v~~~~fspdg~ 418 (448)
+.|.|||+.++ +.+..+..+......++++|+|.
T Consensus 325 ~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999999 88777666777889999999986
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.71 E-value=4.9e-15 Score=140.87 Aligned_cols=230 Identities=13% Similarity=0.128 Sum_probs=164.9
Q ss_pred eeEEEEe--cCCEEEEEeCC------------------------CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCC
Q 013184 193 QVSTLAV--RDNLLIAGGFQ------------------------GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSP 246 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~d------------------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 246 (448)
++.++++ +++++++...+ +.|.+|+..+.... .......-..+..+++ ++
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~p~gia~--d~ 100 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL--QSSGKNLFYLPHGLSI--DT 100 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE--EEECTTTCSSEEEEEE--CT
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE--eccCCCccCCceEEEE--CC
Confidence 5788888 77888888777 47999998766542 2222222234455655 88
Q ss_pred CCCeeEEEEeCCCcEEEEecCCce-EEEEee----------cCCCeeEEEECC-CCCEEEEEe-cCCcEEEEECCCCcee
Q 013184 247 SGGIHFMASNNDCGVRDFDMERFQ-LSKHFS----------FPWPVNHTSLSP-DGKLLVIVG-DNPEGILVDSQTGKAI 313 (448)
Q Consensus 247 ~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~----------~~~~v~~~~~sp-~~~~l~~~~-~d~~i~i~d~~~~~~~ 313 (448)
+|. ++++...++.|++|+..... .+..+. +-..+..++++| ++.++++.+ .++.|++|+ .+++.+
T Consensus 101 ~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~ 178 (329)
T 3fvz_A 101 DGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFV 178 (329)
T ss_dssp TSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEE
T ss_pred CCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEE
Confidence 887 77788888999999986542 344442 223578999999 788888876 689999999 667777
Q ss_pred Eeeec----------CCCcEEEEEEcCC-CCEEEEEeCCCcEEEEEccCCCcceEEEc--cCCCCeEEEEEcCCCCEEEE
Q 013184 314 MPLCG----------HLDFSFASAWHPD-GRIFATGNQDKTCRVWDVRNLSKSVAVLK--GNLGAIRSIRFTSDGNFMAM 380 (448)
Q Consensus 314 ~~l~~----------h~~~v~~~~~~p~-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~s 380 (448)
..+.. +......++++|+ ++++++...++.|++|+..+ ++.+..+. .+...+..++|+| |..+++
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~-G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~ 256 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT-KEFVREIKHASFGRNVFAISYIP-GFLFAV 256 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT-CCEEEEECCTTTTTCEEEEEEET-TEEEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC-CcEEEEEeccccCCCcceeeecC-CEEEEe
Confidence 76642 2234889999998 77777777889999999975 67777763 4556788999999 444443
Q ss_pred E-------eCCCeEEEEECCCCceeeeee---cCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 381 A-------EPADFVHVYDAKNGFEKEQEI---DFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 381 ~-------~~d~~v~vwd~~~~~~~~~~~---~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
. ..+..|++|+..+++.+..+. .+...+.+|+++|+|..+++...++++.
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 3 234589999999998877663 5667899999999995555544454433
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=4.1e-15 Score=154.91 Aligned_cols=238 Identities=12% Similarity=0.026 Sum_probs=158.2
Q ss_pred eeEEEEecCCEE--EEE--eCCCeEEEEEcCCCCceeEEEeecCCCCcee---------eEEEEeCCCCCe-eEEEEeCC
Q 013184 193 QVSTLAVRDNLL--IAG--GFQGELICKYLDQPGVSFCSRTTYDENAITN---------AVEIYNSPSGGI-HFMASNND 258 (448)
Q Consensus 193 ~i~~l~~~~~~l--vsg--~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~-~l~s~s~d 258 (448)
.+..++++++.+ +.. +.++...+|.....+.. ..+..+.. .+. ...+..+|+|+. ++++...+
T Consensus 25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~l~~~~~-~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~ 101 (662)
T 3azo_A 25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAE--ESALPAPW-NVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD 101 (662)
T ss_dssp CCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCE--EESSCTTC-CBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT
T ss_pred ccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCc--ceeCCCCc-cccccccccCCccceeeeecCCCeEEEEEECCC
Confidence 577777755543 334 34788999997443322 33333332 222 333433599985 44444446
Q ss_pred CcEEEEecC--C-ceEEEEee-----cCCCeeEEEECCCCCEEEEEecC----------CcEEEEECCC------CceeE
Q 013184 259 CGVRDFDME--R-FQLSKHFS-----FPWPVNHTSLSPDGKLLVIVGDN----------PEGILVDSQT------GKAIM 314 (448)
Q Consensus 259 g~v~iwd~~--~-~~~~~~~~-----~~~~v~~~~~sp~~~~l~~~~~d----------~~i~i~d~~~------~~~~~ 314 (448)
..|.++++. + ++...... +...+..++|+|+|+.|++++.+ ..|++||+.+ ++. .
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~ 180 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-R 180 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-E
T ss_pred CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-e
Confidence 778888876 3 55443333 35568899999999999998876 5899999988 554 4
Q ss_pred eee-cCCCcEEEEEEcCCCCEEEEEeCC--------CcEEEEEccCCC---cceEEEccCCCCeEEEEEcCCCCEEEEEe
Q 013184 315 PLC-GHLDFSFASAWHPDGRIFATGNQD--------KTCRVWDVRNLS---KSVAVLKGNLGAIRSIRFTSDGNFMAMAE 382 (448)
Q Consensus 315 ~l~-~h~~~v~~~~~~p~g~~l~s~~~d--------~~i~iwd~~~~~---~~~~~~~~~~~~v~~l~~sp~g~~l~s~~ 382 (448)
.+. .+...+..++|+|||++|+.++.+ ..|.+||+...+ ........+...+..+.|+|||++++++.
T Consensus 181 ~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~ 260 (662)
T 3azo_A 181 ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATD 260 (662)
T ss_dssp ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEEC
T ss_pred EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEEC
Confidence 555 566778889999999999987754 379999997324 33334444578899999999999888887
Q ss_pred CCC--eEEEEECCCCceeeeeecCcCc--------eEEEEEccCCCeEEEEEecCCcceEEEEe
Q 013184 383 PAD--FVHVYDAKNGFEKEQEIDFFGE--------ISGMTFSPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 383 ~d~--~v~vwd~~~~~~~~~~~~~~~~--------v~~~~fspdg~~L~~~~~D~~~~~ll~~~ 436 (448)
.++ .|++||+.++........+... +..++|+|++++++++.. + ...+..+.
T Consensus 261 ~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~-~~~l~~~d 322 (662)
T 3azo_A 261 RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G-AAVLGILD 322 (662)
T ss_dssp TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S-SCEEEEEE
T ss_pred CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C-ccEEEEEE
Confidence 777 6777787666544322222221 567899999998888765 3 34444443
No 171
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.66 E-value=8.1e-14 Score=130.09 Aligned_cols=224 Identities=15% Similarity=0.108 Sum_probs=159.4
Q ss_pred EEEEe--cCC-EEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceE
Q 013184 195 STLAV--RDN-LLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQL 271 (448)
Q Consensus 195 ~~l~~--~~~-~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~ 271 (448)
.++++ +++ +++++..++.|..|+.... . .... .+...+..+.+ +++|. ++++...++.|.+||..+++.
T Consensus 31 eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~---~~~~-~~~~~~~~l~~--~~dg~-l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L---SPEM-HPSHHQNGHCL--NKQGH-LIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp EEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E---EEEE-SSCSSEEEEEE--CTTCC-EEEEETTTTEEEEECSTTCCE
T ss_pred cCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e---EEEE-CCCCCcceeeE--CCCCc-EEEEecCCCeEEEEcCCCCcE
Confidence 45555 676 7888999999999998765 2 2222 23344555555 88886 566665678999999988776
Q ss_pred EEEee-----cCCCeeEEEECCCCCEEEEE----e-------------cCCcEEEEECCCCceeEeeecCCCcEEEEEEc
Q 013184 272 SKHFS-----FPWPVNHTSLSPDGKLLVIV----G-------------DNPEGILVDSQTGKAIMPLCGHLDFSFASAWH 329 (448)
Q Consensus 272 ~~~~~-----~~~~v~~~~~sp~~~~l~~~----~-------------~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~ 329 (448)
..... ....++.++++|+|+++++. + ..+.|..++.. ++ +..+..+......++|+
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s 180 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFL 180 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEEC
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEEC
Confidence 54432 12356789999999988873 2 13456666655 44 34455667778999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCCcc---eEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcC
Q 013184 330 PDGRIFATGNQDKTCRVWDVRNLSKS---VAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFG 406 (448)
Q Consensus 330 p~g~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~ 406 (448)
|+|+.+++.+.++.|.+|++...+.. ...+..+.+.+..++++++|++.++. ++.|.+|+.. ++.+..+..+.+
T Consensus 181 ~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~ 257 (296)
T 3e5z_A 181 PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT 257 (296)
T ss_dssp TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC
T ss_pred CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC
Confidence 99998877777889999999632333 23333345567889999999876665 7889999975 777766666666
Q ss_pred ceEEEEE-ccCCCeEEEEEecCCcceEEEEe
Q 013184 407 EISGMTF-SPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 407 ~v~~~~f-spdg~~L~~~~~D~~~~~ll~~~ 436 (448)
+++++| +|+++.|++++.+ .++.+.
T Consensus 258 -~~~~~f~~~d~~~L~v~t~~----~l~~~~ 283 (296)
T 3e5z_A 258 -TSNLCFGGPEGRTLYMTVST----EFWSIE 283 (296)
T ss_dssp -CCEEEEESTTSCEEEEEETT----EEEEEE
T ss_pred -ceeEEEECCCCCEEEEEcCC----eEEEEE
Confidence 999999 5899999998865 455544
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.66 E-value=5.5e-13 Score=126.41 Aligned_cols=236 Identities=14% Similarity=0.120 Sum_probs=161.2
Q ss_pred eEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC----CcEEEEecC
Q 013184 194 VSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND----CGVRDFDME 267 (448)
Q Consensus 194 i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d----g~v~iwd~~ 267 (448)
+.++++ ++++++++..++.|.+|+..+..... ........+..+.+ +++|. +++++..+ +.|.+||..
T Consensus 47 ~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~--~~dg~-l~v~~~~~~~~~~~i~~~d~~ 120 (333)
T 2dg1_A 47 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR---PFVSHKANPAAIKI--HKDGR-LFVCYLGDFKSTGGIFAATEN 120 (333)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE---EEECSSSSEEEEEE--CTTSC-EEEEECTTSSSCCEEEEECTT
T ss_pred ccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEE--CCCCc-EEEEeCCCCCCCceEEEEeCC
Confidence 455666 67888888899999999987665332 11122334555554 88876 55655555 689999998
Q ss_pred CceEEEEee---cCCCeeEEEECCCCCEEEEEec------CCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEE
Q 013184 268 RFQLSKHFS---FPWPVNHTSLSPDGKLLVIVGD------NPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATG 338 (448)
Q Consensus 268 ~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~------d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~ 338 (448)
+++....+. ....++.++++|+|+++++... .+.|..++..+++... +..+...+..++|+|+|+.|+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~ 199 (333)
T 2dg1_A 121 GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVT 199 (333)
T ss_dssp SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEE
T ss_pred CCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEE
Confidence 877553332 3456899999999988776653 3567777766655433 32334457889999999866544
Q ss_pred -eCCCcEEEEEccCCCcceEE--------EccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcC---
Q 013184 339 -NQDKTCRVWDVRNLSKSVAV--------LKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFG--- 406 (448)
Q Consensus 339 -~~d~~i~iwd~~~~~~~~~~--------~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~--- 406 (448)
+.++.|.+|++...+..+.. +.++ ..+..++++++|+++++...++.|.+||. .++.+..+.....
T Consensus 200 ~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g 277 (333)
T 2dg1_A 200 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEG 277 (333)
T ss_dssp EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGT
T ss_pred eCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccc
Confidence 55789999999642333221 1122 36788999999998888778889999997 4665555543322
Q ss_pred ---ceEEEEEccCCCeEEEEEecC---CcceEEEEecc
Q 013184 407 ---EISGMTFSPDTEALFIGVWDR---TYGSLLQYNRC 438 (448)
Q Consensus 407 ---~v~~~~fspdg~~L~~~~~D~---~~~~ll~~~~~ 438 (448)
.+.+++|+|+++.|++++.++ .-+.++.+...
T Consensus 278 ~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 278 HMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp CSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred cccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 689999999998888877764 24567766544
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.64 E-value=1.2e-12 Score=121.41 Aligned_cols=241 Identities=10% Similarity=0.104 Sum_probs=158.5
Q ss_pred ccccccceeeeCCCCeEEEe--cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cCCEEE
Q 013184 131 LHFQLRNLVWSTSKHDVYLM--SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RDNLLI 205 (448)
Q Consensus 131 ~hfq~r~l~~~~~~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~~~lv 205 (448)
.+|....-+.....+.+|++ .++.|.+|+.. +.....+...+.. ++. ...+..+++ ++++++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~------~~~------~~~p~~i~~~~~~g~l~v 93 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR------DSQ------LLYPNRVAVVRNSGDIIV 93 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS------TTC------BSSEEEEEEETTTTEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCC------ccc------ccCceEEEEEcCCCeEEE
Confidence 34444444444444567776 36679999965 3322222111100 000 013566666 445555
Q ss_pred EEeC-CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee---cCCCe
Q 013184 206 AGGF-QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS---FPWPV 281 (448)
Q Consensus 206 sg~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v 281 (448)
+... ++.|.+|+.. .... ..+.......+..+.+ +++|. ++++...++.|.+|+.. ++.+..+. +...+
T Consensus 94 ~~~~~~~~i~~~d~~-g~~~--~~~~~~~~~~~~~i~~--~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 94 TERSPTHQIQIYNQY-GQFV--RKFGATILQHPRGVTV--DNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFP 166 (286)
T ss_dssp EECGGGCEEEEECTT-SCEE--EEECTTTCSCEEEEEE--CTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSE
T ss_pred EcCCCCCEEEEECCC-CcEE--EEecCccCCCceEEEE--eCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCc
Confidence 5533 8899999843 3221 2222222334455555 88875 67776778899999965 55555554 33468
Q ss_pred eEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecC--CCcEEEEEEcCCCCEEEEEeCCC-cEEEEEccCCCcceEE
Q 013184 282 NHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGH--LDFSFASAWHPDGRIFATGNQDK-TCRVWDVRNLSKSVAV 358 (448)
Q Consensus 282 ~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h--~~~v~~~~~~p~g~~l~s~~~d~-~i~iwd~~~~~~~~~~ 358 (448)
.+++++|+|+++++...++.|.+||. .++.+..+..+ ...+..++++|+|+++++...++ .|.+|+.. ++.+..
T Consensus 167 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~ 243 (286)
T 1q7f_A 167 NGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISA 243 (286)
T ss_dssp EEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEE
T ss_pred EEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEE
Confidence 99999999997777778899999997 45666666543 46789999999999888887775 99999964 566666
Q ss_pred EccCCC--CeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 013184 359 LKGNLG--AIRSIRFTSDGNFMAMAEPADFVHVYDAKNG 395 (448)
Q Consensus 359 ~~~~~~--~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~ 395 (448)
+..+.. .+..++++|+|+++++ +.++.|++|++...
T Consensus 244 ~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 244 LESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 655433 4779999999987666 67899999997653
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.64 E-value=1.8e-13 Score=130.41 Aligned_cols=238 Identities=11% Similarity=0.063 Sum_probs=156.9
Q ss_pred CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCC---Ce--EEEEEcCCCCce
Q 013184 152 HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQ---GE--LICKYLDQPGVS 224 (448)
Q Consensus 152 ~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~d---g~--i~vw~~~~~~~~ 224 (448)
...|.+|++.++....+ . .+..+++ +|+.|+..+.+ +. |.+|++......
T Consensus 42 ~~~l~~~d~~~~~~~~l---~--------------------~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~ 98 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI---E--------------------NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK 98 (347)
T ss_dssp EEEEEEEETTTCCEEEE---E--------------------SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred cceEEEEeCCCCceEEc---c--------------------cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE
Confidence 34588888876654433 1 1444555 88888887754 34 666666554322
Q ss_pred eEEEeecCCCCceeeEEEEeCCCCCeeEEEEeC--------------------------CCcEEEEecCCceEEEEeecC
Q 013184 225 FCSRTTYDENAITNAVEIYNSPSGGIHFMASNN--------------------------DCGVRDFDMERFQLSKHFSFP 278 (448)
Q Consensus 225 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~--------------------------dg~v~iwd~~~~~~~~~~~~~ 278 (448)
.+..... +..+ .++|+|..+++++.. ...|++|++.+++.+..+..+
T Consensus 99 ---~l~~~~~--~~~~--~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~ 171 (347)
T 2gop_A 99 ---KILEAKN--IRSL--EWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP 171 (347)
T ss_dssp ---EEEEESE--EEEE--EECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE
T ss_pred ---EEEcCCC--ccce--eECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC
Confidence 2222222 4444 459999854444432 257999999988873333334
Q ss_pred CCeeEEEECCCCCEEEEEecCC---------cEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCC--------
Q 013184 279 WPVNHTSLSPDGKLLVIVGDNP---------EGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQD-------- 341 (448)
Q Consensus 279 ~~v~~~~~sp~~~~l~~~~~d~---------~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d-------- 341 (448)
.+..++|+|+| +++++..+. .|.++| +++. ..+..+ ..+..+ +|+|++|+.++.+
T Consensus 172 -~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~ 243 (347)
T 2gop_A 172 -RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEH 243 (347)
T ss_dssp -TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSS
T ss_pred -CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCcccc
Confidence 88999999999 777765432 355555 5543 444444 445444 9999988887754
Q ss_pred CcEEEEEccCCCcceEEEccCCCCeEE-EEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeE
Q 013184 342 KTCRVWDVRNLSKSVAVLKGNLGAIRS-IRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEAL 420 (448)
Q Consensus 342 ~~i~iwd~~~~~~~~~~~~~~~~~v~~-l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L 420 (448)
..|.+|| . ++.......+...+.. +.|+ +| ++++++.++.++|| +.+++. ..+..+.+.|.+++|+| ..+
T Consensus 244 ~~l~~~d--~-~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~ 314 (347)
T 2gop_A 244 NKLYIYD--G-KEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVV 314 (347)
T ss_dssp CEEEEEC--S-SCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEE
T ss_pred ceEEEEC--C-CceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEE
Confidence 3577777 2 4444444455677886 9999 88 88999999999999 876554 44555677899999999 677
Q ss_pred EEEEecCCcceEEEEe
Q 013184 421 FIGVWDRTYGSLLQYN 436 (448)
Q Consensus 421 ~~~~~D~~~~~ll~~~ 436 (448)
++++.+.....+..+.
T Consensus 315 ~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 315 YLKETATRLRELFTWD 330 (347)
T ss_dssp EEEECSSSCCEEEEES
T ss_pred EEEcCCCChHHheEeC
Confidence 8888887776777664
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.64 E-value=7.2e-14 Score=133.24 Aligned_cols=217 Identities=13% Similarity=0.099 Sum_probs=147.1
Q ss_pred eeEEEEecCCEEEEEe---------CCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC--C--
Q 013184 193 QVSTLAVRDNLLIAGG---------FQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND--C-- 259 (448)
Q Consensus 193 ~i~~l~~~~~~lvsg~---------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d--g-- 259 (448)
.+...+++|+.++... .++.|.+|++...... .+ ..+..+ .++|+|..++++.... +
T Consensus 16 ~~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~---~l-----~~~~~~--~~SpDg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 16 YLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARR---FI-----ENATMP--RISPDGKKIAFMRANEEKKVS 85 (347)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE---EE-----ESCEEE--EECTTSSEEEEEEEETTTTEE
T ss_pred EcccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceE---Ec-----ccCCCe--EECCCCCEEEEEEeccCCCcc
Confidence 3455555888776642 3678889998876532 22 122334 4599998444444322 3
Q ss_pred cEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecC---------------------------CcEEEEECCCCce
Q 013184 260 GVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDN---------------------------PEGILVDSQTGKA 312 (448)
Q Consensus 260 ~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---------------------------~~i~i~d~~~~~~ 312 (448)
.|.+|++.+++......... +..++|+|+|+.|+.++.+ ..|.+||+.+++.
T Consensus 86 ~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 164 (347)
T 2gop_A 86 EIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV 164 (347)
T ss_dssp EEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred eEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence 48888999888777766555 9999999999999888742 5789999998887
Q ss_pred eEeeecCCCcEEEEEEcCCCCEEEEEeCCC-------cEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCC-
Q 013184 313 IMPLCGHLDFSFASAWHPDGRIFATGNQDK-------TCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA- 384 (448)
Q Consensus 313 ~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d- 384 (448)
+..+.. . .+..++|+|+| ++++++.+. ...||.+. .++ ...+..+ ..+..+ +|+|++|+.++.+
T Consensus 165 ~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~ 236 (347)
T 2gop_A 165 IEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPE 236 (347)
T ss_dssp EEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCS
T ss_pred EeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCc-eEEeccC-cceeeE--CCCCCEEEEEEccc
Confidence 455554 3 67889999999 888776642 45666665 243 3444444 555544 9999998887754
Q ss_pred -------CeEEEEECCCCceeeeeecCcCceEE-EEEccCCCeEEEEEecCCcceEE
Q 013184 385 -------DFVHVYDAKNGFEKEQEIDFFGEISG-MTFSPDTEALFIGVWDRTYGSLL 433 (448)
Q Consensus 385 -------~~v~vwd~~~~~~~~~~~~~~~~v~~-~~fspdg~~L~~~~~D~~~~~ll 433 (448)
..|++|| ++........+...+.. +.|+ +| .+++++.++.. .++
T Consensus 237 ~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~-~l~ 288 (347)
T 2gop_A 237 KKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSV-NLY 288 (347)
T ss_dssp SSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEE-EEE
T ss_pred cCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcE-EEE
Confidence 3688888 55544333445677886 9999 88 88888777643 444
No 176
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.63 E-value=1.7e-13 Score=126.71 Aligned_cols=227 Identities=11% Similarity=0.052 Sum_probs=170.1
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecC-
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFP- 278 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~- 278 (448)
.+++|++++.++.|.+|+..+.+.. .++..+....+..+.+ .|+|. +++ +.++.|..||. +++.+..+...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~--w~~~~~~~~~~~~~~~--~pdG~-ilv--s~~~~V~~~d~-~G~~~W~~~~~~ 75 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIV--WEYPLEKGWECNSVAA--TKAGE-ILF--SYSKGAKMITR-DGRELWNIAAPA 75 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEE--EEEECCTTCCCCEEEE--CTTSC-EEE--ECBSEEEEECT-TSCEEEEEECCT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEE--EEeCCCccCCCcCeEE--CCCCC-EEE--eCCCCEEEECC-CCCEEEEEcCCC
Confidence 4688999999999999998776654 3333322123445555 78886 555 44778999999 78999888843
Q ss_pred -CCeeEEEECCCCCEEEEEec-CCcEEEEECCCCceeEeeec------CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 013184 279 -WPVNHTSLSPDGKLLVIVGD-NPEGILVDSQTGKAIMPLCG------HLDFSFASAWHPDGRIFATGNQDKTCRVWDVR 350 (448)
Q Consensus 279 -~~v~~~~~sp~~~~l~~~~~-d~~i~i~d~~~~~~~~~l~~------h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~ 350 (448)
..+.++.+.|+|+.+++.+. ++.+..+|. +|+.+..+.. +......+++.++|+++++...++.|..||..
T Consensus 76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 76 GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence 57889999999999999887 778888885 7877766542 21234456789999999999999999999985
Q ss_pred CCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCc------CceEEEEEccCCCeEEEEE
Q 013184 351 NLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFF------GEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 351 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~------~~v~~~~fspdg~~L~~~~ 424 (448)
++.+..+... ..+.++.+.++|++++++..++.|..+|..+|+.+.++.... ..+.+++..++|..+++.
T Consensus 155 --G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~- 230 (276)
T 3no2_A 155 --GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN- 230 (276)
T ss_dssp --SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE-
T ss_pred --CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe-
Confidence 6777777654 345678889999999999888899999999899887776432 238899999999877664
Q ss_pred ecCC--------cceEEEEeccc
Q 013184 425 WDRT--------YGSLLQYNRCR 439 (448)
Q Consensus 425 ~D~~--------~~~ll~~~~~~ 439 (448)
+.+. -+.++++.+..
T Consensus 231 ~~g~~~~~~~~~~~~~~~~~~~g 253 (276)
T 3no2_A 231 WQGHDREAGKGKHPQLVEIDSEG 253 (276)
T ss_dssp ECTTCTTGGGSCCCSEEEECTTS
T ss_pred ccCccccccccCCceEEEECCCC
Confidence 4332 34677775543
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.63 E-value=2.2e-13 Score=129.34 Aligned_cols=219 Identities=13% Similarity=0.114 Sum_probs=152.6
Q ss_pred CeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEee
Q 013184 153 FSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTT 230 (448)
Q Consensus 153 ~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~ 230 (448)
+.|.+|+..+++...... .++.. ....+++ +++++++...++.|++|+.+...... ..+.
T Consensus 69 ~~i~~~d~~~g~~~~~~~-~~~~~----------------~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~-~~~~ 130 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSG-KNLFY----------------LPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPL-LILG 130 (329)
T ss_dssp CCEEEECTTTCCEEEEEC-TTTCS----------------SEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCS-EEES
T ss_pred CcEEEEECCCCeEEeccC-CCccC----------------CceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEE-EEec
Confidence 368999987666543321 12211 2456666 78889999999999999986542111 1121
Q ss_pred --------cCCCCceeeEEEEeCCCCCeeEEEEe-CCCcEEEEecCCceEEEEee-cC----------CCeeEEEECCC-
Q 013184 231 --------YDENAITNAVEIYNSPSGGIHFMASN-NDCGVRDFDMERFQLSKHFS-FP----------WPVNHTSLSPD- 289 (448)
Q Consensus 231 --------~~~~~~~~~v~~~~~~~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~-~~----------~~v~~~~~sp~- 289 (448)
..+-..+..+++ +|+++.++++.+ .++.|++|+ ..++.+..+. .. ..+..++++|+
T Consensus 131 ~~~~~g~~~~~~~~P~~ia~--~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~ 207 (329)
T 3fvz_A 131 RSMQPGSDQNHFCQPTDVAV--EPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL 207 (329)
T ss_dssp BTTBCCCSTTCCSSEEEEEE--CTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT
T ss_pred ccCCCCCCccccCCCcEEEE--eCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC
Confidence 112223445555 884344666665 689999999 4566666664 11 23789999998
Q ss_pred CCEEEEEecCCcEEEEECCCCceeEeee--cCCCcEEEEEEcCCCCEEEEE-------eCCCcEEEEEccCCCcceEEEc
Q 013184 290 GKLLVIVGDNPEGILVDSQTGKAIMPLC--GHLDFSFASAWHPDGRIFATG-------NQDKTCRVWDVRNLSKSVAVLK 360 (448)
Q Consensus 290 ~~~l~~~~~d~~i~i~d~~~~~~~~~l~--~h~~~v~~~~~~p~g~~l~s~-------~~d~~i~iwd~~~~~~~~~~~~ 360 (448)
+.++++...++.|++|+..+|+.+..+. .+...+.+++++| +..+++. ..+..|++|+..+ ++.+..+.
T Consensus 208 g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~ 285 (329)
T 3fvz_A 208 DQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFK 285 (329)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-CCEEEEEC
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEc
Confidence 6666777788899999999899888874 4567789999999 4333333 3455899999976 67777763
Q ss_pred ---cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 013184 361 ---GNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 361 ---~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~ 394 (448)
++...+..++++|+|..+++...++.|++|++..
T Consensus 286 ~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 286 PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 5667789999999998888888889999999753
No 178
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.63 E-value=8.1e-13 Score=125.45 Aligned_cols=248 Identities=6% Similarity=0.004 Sum_probs=167.8
Q ss_pred CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-cCCEEEEEeCCCeEEEEEcCCCCceeEEEee
Q 013184 152 HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-RDNLLIAGGFQGELICKYLDQPGVSFCSRTT 230 (448)
Q Consensus 152 ~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~ 230 (448)
+++|.++|+.+++....+.......+ + +.....+.+ .++++++...++.|.+||..+.+.... +.
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~-----------l-g~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~--i~ 81 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFK-----------L-GDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGR--IT 81 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSC-----------C-BSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEE--EE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcc-----------c-CccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEE--cC
Confidence 45799999877654322210000000 0 012355666 455566666689999999987765322 22
Q ss_pred cCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCC------CeeEEEECCCCCEEEEEe--cCCcE
Q 013184 231 YDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPW------PVNHTSLSPDGKLLVIVG--DNPEG 302 (448)
Q Consensus 231 ~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~------~v~~~~~sp~~~~l~~~~--~d~~i 302 (448)
....+..+.+ ++++ .++++...++.|.+||+.++++...+.... ....+++ ++..++++. .++.|
T Consensus 82 --~~~~p~~i~~--~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v 154 (328)
T 3dsm_A 82 --GFTSPRYIHF--LSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRI 154 (328)
T ss_dssp --CCSSEEEEEE--EETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEE
T ss_pred --CCCCCcEEEE--eCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEE
Confidence 1233445544 5666 455555478999999999999888877444 5667777 355555555 47899
Q ss_pred EEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCC----------CcEEEEEccCCCcceEEEccC-CCCeEEEEE
Q 013184 303 ILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQD----------KTCRVWDVRNLSKSVAVLKGN-LGAIRSIRF 371 (448)
Q Consensus 303 ~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~~-~~~v~~l~~ 371 (448)
.++|+.+++.+..+.... ....++++|+|++++++..+ +.|.++|..+ .+....+... ......++|
T Consensus 155 ~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t-~~v~~~~~~~~g~~p~~la~ 232 (328)
T 3dsm_A 155 LKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET-FTVEKQFKFKLGDWPSEVQL 232 (328)
T ss_dssp EEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT-TEEEEEEECCTTCCCEEEEE
T ss_pred EEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC-CeEEEEEecCCCCCceeEEE
Confidence 999999999888776433 34678999999977777655 7899999976 5555555432 236789999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCceeee-eec-CcCceEEEEEccCCCeEEEEE
Q 013184 372 TSDGNFMAMAEPADFVHVYDAKNGFEKEQ-EID-FFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 372 sp~g~~l~s~~~d~~v~vwd~~~~~~~~~-~~~-~~~~v~~~~fspdg~~L~~~~ 424 (448)
+|+|++|.++.. .|.+||..+++.... +.. ....+.+++++|++..|+++.
T Consensus 233 ~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 233 NGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp CTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred ecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence 999999988765 899999988775321 122 245789999999766677665
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.61 E-value=1.2e-13 Score=143.68 Aligned_cols=212 Identities=14% Similarity=0.059 Sum_probs=141.8
Q ss_pred ecCCE-EEEEeC-CCeEEEEEcC--C-CCceeEEEeecC----CCCceeeEEEEeCCCCCeeEEEEeCC----------C
Q 013184 199 VRDNL-LIAGGF-QGELICKYLD--Q-PGVSFCSRTTYD----ENAITNAVEIYNSPSGGIHFMASNND----------C 259 (448)
Q Consensus 199 ~~~~~-lvsg~~-dg~i~vw~~~--~-~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~s~s~d----------g 259 (448)
.+++. |+.++. ++.|.++++. . ... ..+... +...... +.++|+|+ .|++++.+ .
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~---~~l~~~~~~~~~~~~~~--~~~spDg~-~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVP---RPLTPVSAVGGGLRWAD--PVLLPERG-EVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCCC---EECSCCCCSTTCEEEEE--EEEETTTT-EEEEEEEEECSSSTTCEEE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCCC---EeccCCccCCCCccccC--cEECCCCC-EEEEEEecccCCCCCCcee
Confidence 57877 665543 5566666654 2 221 223221 2233334 45599998 56666655 5
Q ss_pred cEEEEecCC------ceEEEEe-ecCCCeeEEEECCCCCEEEEEecC--------CcEEEEECC-CC---ceeEeeecCC
Q 013184 260 GVRDFDMER------FQLSKHF-SFPWPVNHTSLSPDGKLLVIVGDN--------PEGILVDSQ-TG---KAIMPLCGHL 320 (448)
Q Consensus 260 ~v~iwd~~~------~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d--------~~i~i~d~~-~~---~~~~~l~~h~ 320 (448)
.|++|++.+ ++..... .+...+..++|||||+.|+.++.+ ..|++||+. ++ +......+|.
T Consensus 162 ~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~ 241 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE 241 (662)
T ss_dssp EEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred EEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence 899999988 6665555 555678889999999999988754 379999998 57 4444445567
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCc--EEEEEccCCCcceEEEccCCC-C--------eEEEEEcCCCCEEEEEeCCCeEEE
Q 013184 321 DFSFASAWHPDGRIFATGNQDKT--CRVWDVRNLSKSVAVLKGNLG-A--------IRSIRFTSDGNFMAMAEPADFVHV 389 (448)
Q Consensus 321 ~~v~~~~~~p~g~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~-~--------v~~l~~sp~g~~l~s~~~d~~v~v 389 (448)
..+..++|+|||+++++++.++. |.+||+.. ++ ...+..+.. . +..++|+|+|++++++.. +.++|
T Consensus 242 ~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~-~~-~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l 318 (662)
T 3azo_A 242 EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT-GA-ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL 318 (662)
T ss_dssp BCEEEEEECTTSCEEEEECTTSSCEEEEECTTT-CC-EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred ceEcceEECCCCeEEEEECCCCCeEEEEEECCC-Cc-eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence 88999999999998888888884 55555433 33 333332222 1 567899999999999998 98888
Q ss_pred E--ECCCCceeeeeecCcCceEEEEEccCCCeEE
Q 013184 390 Y--DAKNGFEKEQEIDFFGEISGMTFSPDTEALF 421 (448)
Q Consensus 390 w--d~~~~~~~~~~~~~~~~v~~~~fspdg~~L~ 421 (448)
| |+.++. +..+..+.+.+..+ |+++++.++
T Consensus 319 ~~~d~~~~~-~~~l~~~~~~~~~~-~s~~~~~~~ 350 (662)
T 3azo_A 319 GILDPESGE-LVDAAGPWTEWAAT-LTVSGTRAV 350 (662)
T ss_dssp EEEETTTTE-EEECCSSCCEEEEE-EEEETTEEE
T ss_pred EEEECCCCc-EEEecCCCCeEEEE-EecCCCEEE
Confidence 8 655554 56666677777766 155555444
No 180
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.61 E-value=2.8e-13 Score=131.14 Aligned_cols=180 Identities=12% Similarity=0.004 Sum_probs=133.9
Q ss_pred eCCCCCeeEEEEeCCC--cEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCC
Q 013184 244 NSPSGGIHFMASNNDC--GVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHL 320 (448)
Q Consensus 244 ~~~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~ 320 (448)
++|+|..+++++..++ .|.+||+.+++...... +...+..++|+|+|+.|+.++.++.|++||+.+++....+..+.
T Consensus 43 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~ 122 (388)
T 3pe7_A 43 FTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPA 122 (388)
T ss_dssp BCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCT
T ss_pred CCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechh
Confidence 4899984444444367 48888999998877766 44445577899999999999999999999999998877776666
Q ss_pred CcEEEEE--EcCCCCEEEEE----------------------eCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcC-CC
Q 013184 321 DFSFASA--WHPDGRIFATG----------------------NQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTS-DG 375 (448)
Q Consensus 321 ~~v~~~~--~~p~g~~l~s~----------------------~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp-~g 375 (448)
..+.... ++|++++++.. ..+..|.+||+.+ + ....+..+...+..++|+| +|
T Consensus 123 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-g-~~~~l~~~~~~~~~~~~sp~dg 200 (388)
T 3pe7_A 123 EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT-G-ESTVILQENQWLGHPIYRPYDD 200 (388)
T ss_dssp TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT-C-CEEEEEEESSCEEEEEEETTEE
T ss_pred hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC-C-ceEEeecCCccccccEECCCCC
Confidence 6564444 48999988743 2346799999975 3 3455556677899999999 99
Q ss_pred CEEEEEeCC------CeEEEEECCCCceeeeeecCc--CceEEEEEccCCCeEEEEEec
Q 013184 376 NFMAMAEPA------DFVHVYDAKNGFEKEQEIDFF--GEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 376 ~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~--~~v~~~~fspdg~~L~~~~~D 426 (448)
+.|+.+... ..|.++|+..+.. ..+..+. ..+..++|+|||+.|+..+.+
T Consensus 201 ~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 201 STVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp EEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred CEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecC
Confidence 999887753 3788889766543 3444443 357889999999988766554
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=2.7e-12 Score=134.82 Aligned_cols=236 Identities=11% Similarity=0.002 Sum_probs=161.7
Q ss_pred eeEEEEe--cCCEEEEEeCCC-----eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCc-----
Q 013184 193 QVSTLAV--RDNLLIAGGFQG-----ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCG----- 260 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~----- 260 (448)
.+.++++ +|++|+.+..++ .|++|++.++..... ..... . ...+.| +|+|. .|+.++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~~~~~-~--~~~~~w--spDg~-~l~~~~~~~~~~~~~ 198 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VLERV-K--FSCMAW--THDGK-GMFYNAYPQQDGKSD 198 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EEEEE-C--SCCEEE--CTTSS-EEEEEECCCCSSCCS
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-cccCc-c--cceEEE--EeCCC-EEEEEEECCcccccc
Confidence 3556666 889888776544 899999987664321 11111 1 234444 99987 5566655554
Q ss_pred -----------EEEEecCCceE--EEEee---cCCCeeEEEECCCCCEEEEEec-----CCcEEEEECCC------Cc-e
Q 013184 261 -----------VRDFDMERFQL--SKHFS---FPWPVNHTSLSPDGKLLVIVGD-----NPEGILVDSQT------GK-A 312 (448)
Q Consensus 261 -----------v~iwd~~~~~~--~~~~~---~~~~v~~~~~sp~~~~l~~~~~-----d~~i~i~d~~~------~~-~ 312 (448)
|++|++.+++. ...+. +...+..+.|+|+|++|+.++. +..|++||+.+ +. .
T Consensus 199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 278 (710)
T 2xdw_A 199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK 278 (710)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence 99999987652 12222 3455789999999999988765 56899999986 53 3
Q ss_pred eEeeecCCCcEEEEEEcCCCCEEEEEeCC----CcEEEEEccCCCc-ceEEEccCCC--CeEEEEEcCCCCEEEEEeCCC
Q 013184 313 IMPLCGHLDFSFASAWHPDGRIFATGNQD----KTCRVWDVRNLSK-SVAVLKGNLG--AIRSIRFTSDGNFMAMAEPAD 385 (448)
Q Consensus 313 ~~~l~~h~~~v~~~~~~p~g~~l~s~~~d----~~i~iwd~~~~~~-~~~~~~~~~~--~v~~l~~sp~g~~l~s~~~d~ 385 (448)
...+..+...+.. .|+|+|..|+..+.. +.|.+||+.+... ....+..+.. .+..+.|++++.+++++..++
T Consensus 279 ~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g 357 (710)
T 2xdw_A 279 WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV 357 (710)
T ss_dssp CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC
Confidence 5666667666654 488999877766553 3599999876321 3355555544 688899998888888888887
Q ss_pred --eEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEE-ecCCcceEEEEe
Q 013184 386 --FVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGV-WDRTYGSLLQYN 436 (448)
Q Consensus 386 --~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~-~D~~~~~ll~~~ 436 (448)
.|++|++.+++....+..+.+.+.+++++|+++.|+... ...+-+.+..++
T Consensus 358 ~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 358 KNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred EEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 467778777876666666778899999999998776553 333444555554
No 182
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.59 E-value=4e-13 Score=123.22 Aligned_cols=227 Identities=10% Similarity=0.068 Sum_probs=150.1
Q ss_pred eeEEEEe--cCCEEE-EEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc
Q 013184 193 QVSTLAV--RDNLLI-AGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF 269 (448)
Q Consensus 193 ~i~~l~~--~~~~lv-sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~ 269 (448)
...++++ ++++++ +.+.++.|.+|+....... .........+..+.+ .++|. ++++.. ++.|.+|+..+.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~p~~i~~--~~~g~-l~v~~~-~~~i~~~d~~~~ 97 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---VLPFNGLYQPQGLAV--DGAGT-VYVTDF-NNRVVTLAAGSN 97 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---ECCCCSCCSCCCEEE--CTTCC-EEEEET-TTEEEEECTTCS
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---eEeeCCcCCcceeEE--CCCCC-EEEEcC-CCEEEEEeCCCc
Confidence 3566666 677777 5577899999986544321 111122223445555 77776 555544 889999998765
Q ss_pred eEEEEe-ecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 013184 270 QLSKHF-SFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWD 348 (448)
Q Consensus 270 ~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd 348 (448)
...... .....+..+++.|+|+++++...++.|.+|+..+.............+..++++|+|+++++...++.|.+|+
T Consensus 98 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 98 NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 177 (270)
T ss_dssp CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence 543221 1235688999999999777777788999998666544333333334567899999999777777788999999
Q ss_pred ccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecC
Q 013184 349 VRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 349 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
... .........+...+..++++++|.++++...++.|.+|+............+...+.+++++|+|+.+++...++
T Consensus 178 ~~~-~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 255 (270)
T 1rwi_B 178 AES-NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND 255 (270)
T ss_dssp TTT-CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred cCC-CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCC
Confidence 864 333222223336688999999997777777788999999866543332223346789999999998555554443
No 183
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.57 E-value=6.2e-13 Score=127.99 Aligned_cols=205 Identities=14% Similarity=0.054 Sum_probs=135.8
Q ss_pred CCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEe----------CCCcEEEEecCCceEEEEeec-
Q 013184 209 FQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASN----------NDCGVRDFDMERFQLSKHFSF- 277 (448)
Q Consensus 209 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~- 277 (448)
.|+.|.+||..+.... ..+..+ . .. .+.++|+++. +++++ .++.|.+||+.+++.+..+..
T Consensus 29 ~d~~v~v~D~~t~~~~--~~i~~g--~--~p-~i~~spdg~~-lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~ 100 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFL--GMVPTA--F--NG-HVQVSNDGKK-IYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLP 100 (361)
T ss_dssp GGCEEEEEETTTCCEE--EEEECC--E--EE-EEEECTTSSE-EEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEEC
T ss_pred ccCeEEEEECCCCeEE--EEecCC--C--CC-ceEECCCCCE-EEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcC
Confidence 4789999998776643 223222 1 22 4455999984 44443 367899999999998887762
Q ss_pred ------CCCeeEEEECCCCCEEEEEec--CCcEEEEECCCCceeEe-eecCCCcEEEEEEcCCC-CEEEEEeCCCcEEEE
Q 013184 278 ------PWPVNHTSLSPDGKLLVIVGD--NPEGILVDSQTGKAIMP-LCGHLDFSFASAWHPDG-RIFATGNQDKTCRVW 347 (448)
Q Consensus 278 ------~~~v~~~~~sp~~~~l~~~~~--d~~i~i~d~~~~~~~~~-l~~h~~~v~~~~~~p~g-~~l~s~~~d~~i~iw 347 (448)
......++++|+|++|+++.. ++.|.+||+.+++.+.. +... . ...+.+.|++ ..+++.+.||.+.+|
T Consensus 101 ~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~~~dg~~~~v 178 (361)
T 2oiz_A 101 PKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTICGDGGLLTI 178 (361)
T ss_dssp TTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEEETTSSEEEE
T ss_pred ccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEECCCCcEEEE
Confidence 245678999999999999874 57899999999988877 5421 1 1223344443 344444555555555
Q ss_pred EccCCCcce-------------------------------------------------EEEcc------CC----CCeEE
Q 013184 348 DVRNLSKSV-------------------------------------------------AVLKG------NL----GAIRS 368 (448)
Q Consensus 348 d~~~~~~~~-------------------------------------------------~~~~~------~~----~~v~~ 368 (448)
+....++.. ..+.. +. .....
T Consensus 179 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~ 258 (361)
T 2oiz_A 179 NLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNL 258 (361)
T ss_dssp EECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSC
T ss_pred EECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeE
Confidence 443211111 00000 00 01112
Q ss_pred EEEcCCCCEEEEEeC-----------CCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 369 IRFTSDGNFMAMAEP-----------ADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 369 l~~sp~g~~l~s~~~-----------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
++|+|+|+.++++.. .+.|.+||+.+++.+..+..+. +.+++|+|||++|++++.
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~ 324 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG 324 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC
Confidence 789999888877643 3589999999999888887765 999999999999998764
No 184
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=7.4e-11 Score=109.37 Aligned_cols=263 Identities=10% Similarity=-0.026 Sum_probs=170.8
Q ss_pred eeCCCCeEEEec--CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEE
Q 013184 140 WSTSKHDVYLMS--HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELIC 215 (448)
Q Consensus 140 ~~~~~~~v~~~~--~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~v 215 (448)
.....+.++++. ++.|..|+.. +..... ....+ ...+.++++ +++++++...++.|..
T Consensus 21 ~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~-~~~~~----------------~~~~~~i~~~~~g~l~v~~~~~~~i~~ 82 (299)
T 2z2n_A 21 TVSDKGKVWITQHKANMISCINLD-GKITEY-PLPTP----------------DAKVMCLTISSDGEVWFTENAANKIGR 82 (299)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-CCEEEE-ECSST----------------TCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred EECCCCCEEEEecCCCcEEEEcCC-CCeEEe-cCCcc----------------cCceeeEEECCCCCEEEeCCCCCeEEE
Confidence 333445577764 4679999976 443322 22111 123677777 6677777777888999
Q ss_pred EEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEe-e-cCCCeeEEEECCCCCEE
Q 013184 216 KYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHF-S-FPWPVNHTSLSPDGKLL 293 (448)
Q Consensus 216 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~-~~~~v~~~~~sp~~~~l 293 (448)
|+.. .. ...... ......+..+.+ .++|. ++++...++.|.+|+. +++..... . ....+..+++.|+|++.
T Consensus 83 ~~~~-g~-~~~~~~-~~~~~~~~~i~~--~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~ 155 (299)
T 2z2n_A 83 ITKK-GI-IKEYTL-PNPDSAPYGITE--GPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALW 155 (299)
T ss_dssp ECTT-SC-EEEEEC-SSTTCCEEEEEE--CTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEE
T ss_pred ECCC-Cc-EEEEeC-CCcCCCceeeEE--CCCCC-EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEE
Confidence 9875 22 111111 112233444444 77775 5666666789999998 55544332 2 34568999999999888
Q ss_pred EEEecCCcEEEEECCCCceeEe-eecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceE-EEccCCCCeEEEEE
Q 013184 294 VIVGDNPEGILVDSQTGKAIMP-LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVA-VLKGNLGAIRSIRF 371 (448)
Q Consensus 294 ~~~~~d~~i~i~d~~~~~~~~~-l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~l~~ 371 (448)
++....+.|..||. +++.... +..+...+..++++++|+++++...++.|.+||. + +.... .+..+...+.++++
T Consensus 156 v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~-g~~~~~~~~~~~~~~~~i~~ 232 (299)
T 2z2n_A 156 FTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-S-GEITEFKIPTPNARPHAITA 232 (299)
T ss_dssp EEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T-CCEEEEECSSTTCCEEEEEE
T ss_pred EEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-C-CcEEEEECCCCCCCceeEEE
Confidence 77777789999998 6665432 3334567889999999997777667788999998 4 33322 23334567899999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCceeee-eecCcCceEEEEEccCCCeEEEEEecCCcceEEEEe
Q 013184 372 TSDGNFMAMAEPADFVHVYDAKNGFEKEQ-EIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 372 sp~g~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~ 436 (448)
+++|+..++...++.|.+||. ++..... ...+...+.++++ ++|...++.. . +.+..+.
T Consensus 233 ~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~---~~l~~~~ 292 (299)
T 2z2n_A 233 GAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-C---DKIGKLT 292 (299)
T ss_dssp CSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-T---TEEEEEE
T ss_pred CCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-C---CcEEEEE
Confidence 999997666657789999998 4543222 2234467999999 8887555543 2 4555554
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.55 E-value=8.2e-12 Score=118.47 Aligned_cols=242 Identities=8% Similarity=-0.008 Sum_probs=164.1
Q ss_pred CCCeEEEec--CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEEc
Q 013184 143 SKHDVYLMS--HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKYL 218 (448)
Q Consensus 143 ~~~~v~~~~--~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~~ 218 (448)
..+.+|++. ++.|.+||..+.+....+.. .. ....+++ +++++++...++.|.+||+
T Consensus 52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~--~~-----------------~p~~i~~~~~g~lyv~~~~~~~v~~iD~ 112 (328)
T 3dsm_A 52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITG--FT-----------------SPRYIHFLSDEKAYVTQIWDYRIFIINP 112 (328)
T ss_dssp ETTEEEEEEGGGTEEEEEETTTCCEEEEEEC--CS-----------------SEEEEEEEETTEEEEEEBSCSEEEEEET
T ss_pred ECCEEEEEEcCCCEEEEEECcccEEEEEcCC--CC-----------------CCcEEEEeCCCeEEEEECCCCeEEEEEC
Confidence 356677764 46799999988776554421 11 1345555 5654454448999999998
Q ss_pred CCCCceeEEEeecCCC----CceeeEEEEeCCCCCeeEEEEe-CCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEE
Q 013184 219 DQPGVSFCSRTTYDEN----AITNAVEIYNSPSGGIHFMASN-NDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLL 293 (448)
Q Consensus 219 ~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l 293 (448)
.+..... .+..... ..+..+.+ .++.++++.. .++.|.++|+.+++.+..+........++++|+|+++
T Consensus 113 ~t~~~~~--~i~~g~~~~~~~~p~~i~~----~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~ 186 (328)
T 3dsm_A 113 KTYEITG--YIECPDMDMESGSTEQMVQ----YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMW 186 (328)
T ss_dssp TTTEEEE--EEECTTCCTTTCBCCCEEE----ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEE
T ss_pred CCCeEEE--EEEcCCccccCCCcceEEE----ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEE
Confidence 8765432 2222210 13345544 3444555544 4889999999999998888866667899999999877
Q ss_pred EEEecC----------CcEEEEECCCCceeEeeecC-CCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceE--EEc
Q 013184 294 VIVGDN----------PEGILVDSQTGKAIMPLCGH-LDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVA--VLK 360 (448)
Q Consensus 294 ~~~~~d----------~~i~i~d~~~~~~~~~l~~h-~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~--~~~ 360 (448)
+++..+ +.|.++|..+++....+... ......++++|+++.|++++. .|.+||..+ .+... .+.
T Consensus 187 v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t-~~~~~~~~~~ 263 (328)
T 3dsm_A 187 TITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEA-DRVPVRPFLE 263 (328)
T ss_dssp EEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTC-SSCCSSCSBC
T ss_pred EEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCC-Cceeeeeeec
Confidence 766554 78999999999887776532 236789999999998888765 899999965 33321 122
Q ss_pred cCCCCeEEEEEcCC-CCEEEEE----eCCCeEEEEECCCCceeeeeecCcCceEEEEEc
Q 013184 361 GNLGAIRSIRFTSD-GNFMAMA----EPADFVHVYDAKNGFEKEQEIDFFGEISGMTFS 414 (448)
Q Consensus 361 ~~~~~v~~l~~sp~-g~~l~s~----~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fs 414 (448)
........++++|+ |+..++. ..++.|.+||.. ++.+..+.. .....+++|-
T Consensus 264 ~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P~~~~~~ 320 (328)
T 3dsm_A 264 FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIPGAFCWK 320 (328)
T ss_dssp CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESEEEEEEE
T ss_pred CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCcceEEEe
Confidence 22456789999995 5555554 467899999987 877766543 3445666663
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.55 E-value=2.3e-12 Score=135.35 Aligned_cols=187 Identities=9% Similarity=-0.046 Sum_probs=135.3
Q ss_pred EEEeCCCCCeeEEEEeCCC----cEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCCc---------------
Q 013184 241 EIYNSPSGGIHFMASNNDC----GVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPE--------------- 301 (448)
Q Consensus 241 ~~~~~~~~~~~l~s~s~dg----~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~--------------- 301 (448)
.+.++|+|+.++++.+..| .|++||+.+++.+........+..++|+|||+.|+.++.++.
T Consensus 129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (710)
T 2xdw_A 129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ 208 (710)
T ss_dssp EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCC
Confidence 3445999985555554444 899999999987764333334778999999999999887765
Q ss_pred -EEEEECCCCce----eEeeecCCCcEEEEEEcCCCCEEEEEeC-----CCcEEEEEccC------CCcceEEEccCCCC
Q 013184 302 -GILVDSQTGKA----IMPLCGHLDFSFASAWHPDGRIFATGNQ-----DKTCRVWDVRN------LSKSVAVLKGNLGA 365 (448)
Q Consensus 302 -i~i~d~~~~~~----~~~l~~h~~~v~~~~~~p~g~~l~s~~~-----d~~i~iwd~~~------~~~~~~~~~~~~~~ 365 (448)
|++|++.+++. +.....|...+..+.|+|||++|+.++. +..|.+||+.. .......+..+...
T Consensus 209 ~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~ 288 (710)
T 2xdw_A 209 KLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG 288 (710)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS
T ss_pred EEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCc
Confidence 99999988763 2222235566889999999999888764 56899999975 22256667777666
Q ss_pred eEEEEEcCCCCEEEEEeCC----CeEEEEECCCCc--eeeeeecCcC--ceEEEEEccCCCeEEEEEecCC
Q 013184 366 IRSIRFTSDGNFMAMAEPA----DFVHVYDAKNGF--EKEQEIDFFG--EISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 366 v~~l~~sp~g~~l~s~~~d----~~v~vwd~~~~~--~~~~~~~~~~--~v~~~~fspdg~~L~~~~~D~~ 428 (448)
+.. .|+|+|+.|+..+.. ..|.+||+.++. ....+..+.. .+.+++|++++.++++...|+.
T Consensus 289 ~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~ 358 (710)
T 2xdw_A 289 EYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK 358 (710)
T ss_dssp CEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred EEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCE
Confidence 655 588999988877653 369999998764 2344555544 6888999977777777766653
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.55 E-value=4e-11 Score=121.71 Aligned_cols=258 Identities=15% Similarity=0.116 Sum_probs=173.4
Q ss_pred eEEEe--cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcC--CC
Q 013184 146 DVYLM--SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLD--QP 221 (448)
Q Consensus 146 ~v~~~--~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~--~~ 221 (448)
.+|++ .+++|.++|..+++....+... ..| ....++.+++++++++.+|.|.+||+. +.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p---------------~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~ 230 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAV---------------HISRLSASGRYLFVIGRDGKVNMIDLWMKEP 230 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECS--SCE---------------EEEEECTTSCEEEEEETTSEEEEEETTSSSC
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCc---------------cceEECCCCCEEEEEcCCCeEEEEECCCCCC
Confidence 44444 3678999999887666555432 111 122344489999999999999999995 44
Q ss_pred CceeEEEeecCCCCceeeEEEEeC----CCCCeeEEEEeCCCcEEEEecCCceEEEEeecC-----------C-------
Q 013184 222 GVSFCSRTTYDENAITNAVEIYNS----PSGGIHFMASNNDCGVRDFDMERFQLSKHFSFP-----------W------- 279 (448)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-----------~------- 279 (448)
... ..+... .....+.+ + |+|+..+++...+++|.++|..+.+++..+... .
T Consensus 231 ~~v--~~i~~G--~~P~~ia~--s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~ 304 (567)
T 1qks_A 231 TTV--AEIKIG--SEARSIET--SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 304 (567)
T ss_dssp CEE--EEEECC--SEEEEEEE--CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred cEe--EEEecC--CCCceeEE--ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEE
Confidence 332 333322 22344444 8 688877777777899999999888776655411 0
Q ss_pred --------------------------------------CeeEEEECCCCCEEEEEe-cCCcEEEEECCCCceeEeeec--
Q 013184 280 --------------------------------------PVNHTSLSPDGKLLVIVG-DNPEGILVDSQTGKAIMPLCG-- 318 (448)
Q Consensus 280 --------------------------------------~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~~~~l~~-- 318 (448)
....+.|+|+|++++++. .++.|.++|+.+++.+..+..
T Consensus 305 ~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg 384 (567)
T 1qks_A 305 ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG 384 (567)
T ss_dssp ECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred EcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccC
Confidence 122567999999987766 578999999999988776653
Q ss_pred ---CCCcEEEEEEcCCCC-EEEEEe-CCCcEEEEEccCC------CcceEEEccCCCCeEEEEEcCCCCEEEEEeC----
Q 013184 319 ---HLDFSFASAWHPDGR-IFATGN-QDKTCRVWDVRNL------SKSVAVLKGNLGAIRSIRFTSDGNFMAMAEP---- 383 (448)
Q Consensus 319 ---h~~~v~~~~~~p~g~-~l~s~~-~d~~i~iwd~~~~------~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~---- 383 (448)
|.+....+ ++|++. .++++. .+++|.++|.... .+.++.+......-..++.+|++++|.+...
T Consensus 385 ~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~ 463 (567)
T 1qks_A 385 QTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPE 463 (567)
T ss_dssp SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSS
T ss_pred cCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCC
Confidence 43322222 688744 445554 4689999998652 2456777655433345789999999998763
Q ss_pred ---CCeEEEEECCCC-----cee-eeee--------cCcCceEEEEEccCCCeEEEEEecC
Q 013184 384 ---ADFVHVYDAKNG-----FEK-EQEI--------DFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 384 ---d~~v~vwd~~~~-----~~~-~~~~--------~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
.+.|.|+|+.+. ... ..+. .....+..+.|+|+|+.|.++.|.+
T Consensus 464 ~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~ 524 (567)
T 1qks_A 464 AEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNG 524 (567)
T ss_dssp HHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECC
T ss_pred cccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecC
Confidence 358999999876 211 1221 1234689999999999999998843
No 188
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.54 E-value=1.4e-13 Score=133.34 Aligned_cols=217 Identities=14% Similarity=0.052 Sum_probs=143.0
Q ss_pred EecCCEEEEEeCC-C--eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEE
Q 013184 198 AVRDNLLIAGGFQ-G--ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKH 274 (448)
Q Consensus 198 ~~~~~~lvsg~~d-g--~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 274 (448)
+.+|++|+..... | .|.+|++..... ..+............ ++|+|. .|+.++.++.|++|++.+++....
T Consensus 44 SpdG~~l~~~~~~~g~~~l~~~d~~~~~~---~~l~~~~~~~~~~~~--~spdg~-~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 44 TQDGKKLLFAGDFDGNRNYYLLNLETQQA---VQLTEGKGDNTFGGF--ISTDER-AFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp CTTSCEEEEEECTTSSCEEEEEETTTTEE---EECCCSSCBCTTTCE--ECTTSS-EEEEEETTTEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEEecCCCceEEEEECCCCcE---EEeecCCCCccccce--ECCCCC-EEEEEEcCCcEEEEECCCCCcEEE
Confidence 4488887766543 3 677777765432 223333222222233 389987 677777888999999998887666
Q ss_pred eecCCC-eeE-------------------EEECCCCCEEEEE-----ecCCcEEEEECCCCceeEeeecCCCcEEEEEEc
Q 013184 275 FSFPWP-VNH-------------------TSLSPDGKLLVIV-----GDNPEGILVDSQTGKAIMPLCGHLDFSFASAWH 329 (448)
Q Consensus 275 ~~~~~~-v~~-------------------~~~sp~~~~l~~~-----~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~ 329 (448)
...... ... +.|+|+++.++.+ ..+..|.+||+.+++..... .+...+..+.|+
T Consensus 118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~s 196 (396)
T 3c5m_A 118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYR 196 (396)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEE
T ss_pred EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceEC
Confidence 652222 112 3567777776654 35568999999988765544 466778999999
Q ss_pred C-CCCEEEEEeCC------CcEEEEEccCCCcceEEEccC--CCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCC
Q 013184 330 P-DGRIFATGNQD------KTCRVWDVRNLSKSVAVLKGN--LGAIRSIRFTSDGNFMAMAEPA-----DFVHVYDAKNG 395 (448)
Q Consensus 330 p-~g~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~--~~~v~~l~~sp~g~~l~s~~~d-----~~v~vwd~~~~ 395 (448)
| +++.|+..+.+ ..|.+||+.. .....+..+ ...+..++|+|+|++|+.++.+ +.|++||+.++
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~--~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDG--SNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTS--CCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCC--CceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 9 88877776543 3578888753 333344333 2357889999999988777544 45999999887
Q ss_pred ceeeeeecCcCceEEEEEcc-CCCeEEEEEec
Q 013184 396 FEKEQEIDFFGEISGMTFSP-DTEALFIGVWD 426 (448)
Q Consensus 396 ~~~~~~~~~~~~v~~~~fsp-dg~~L~~~~~D 426 (448)
+.... ....+ .. ++|+| ||+.|++++.+
T Consensus 275 ~~~~l-~~~~~-~~-~~~s~~dg~~l~~~~~~ 303 (396)
T 3c5m_A 275 ENEEV-MVMPP-CS-HLMSNFDGSLMVGDGCD 303 (396)
T ss_dssp CEEEE-EECCS-EE-EEEECSSSSEEEEEECC
T ss_pred CeEEe-eeCCC-CC-CCccCCCCceEEEecCC
Confidence 65432 22222 33 89999 99988876543
No 189
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.54 E-value=6.4e-12 Score=117.11 Aligned_cols=231 Identities=12% Similarity=0.041 Sum_probs=155.0
Q ss_pred ceeeeCCCCeEEEe--cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCe
Q 013184 137 NLVWSTSKHDVYLM--SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGE 212 (448)
Q Consensus 137 ~l~~~~~~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~ 212 (448)
.+.|.+..+.+|++ .++.|..|+..++ .. .+... . ..+.++++ +++++++...++.
T Consensus 32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~-~~~~~--~----------------~~~~~l~~~~dg~l~v~~~~~~~ 91 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS-PEMHP--S----------------HHQNGHCLNKQGHLIACSHGLRR 91 (296)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE-EEESS--C----------------SSEEEEEECTTCCEEEEETTTTE
T ss_pred CCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE-EEECC--C----------------CCcceeeECCCCcEEEEecCCCe
Confidence 45677777756654 3667999998765 32 22221 1 13577777 6787777777789
Q ss_pred EEEEEcCCCCceeEEEeec-CCCCceeeEEEEeCCCCCeeEEE----Ee-------------CCCcEEEEecCCceEEEE
Q 013184 213 LICKYLDQPGVSFCSRTTY-DENAITNAVEIYNSPSGGIHFMA----SN-------------NDCGVRDFDMERFQLSKH 274 (448)
Q Consensus 213 i~vw~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s----~s-------------~dg~v~iwd~~~~~~~~~ 274 (448)
|.+|+..+........... .....++.+.+ +|+|. ++++ ++ ..+.|..++.. ++....
T Consensus 92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~--d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFEGKKLNSPNDVCL--APDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAP 167 (296)
T ss_dssp EEEECSTTCCEEEEECEETTEECCCCCCEEE--CTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEE
T ss_pred EEEEcCCCCcEEEEeeccCCCCCCCCCCEEE--CCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEe
Confidence 9999986665332111111 11112344555 88886 5555 22 13466667765 555544
Q ss_pred eecCCCeeEEEECCCCCEEEEEecCCcEEEEECC-CCce---eEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 013184 275 FSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQ-TGKA---IMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVR 350 (448)
Q Consensus 275 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~-~~~~---~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~ 350 (448)
......++.++|+|+++.+++.+.++.|.+|++. +++. ...+..+...+..++++++|+++++. ++.|.+|+..
T Consensus 168 ~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 168 IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 4566678999999999999666778899999986 5554 23333345556789999999976666 7889999985
Q ss_pred CCCcceEEEccCCCCeEEEEE-cCCCCEEEEEeCCCeEEEEECCCCce
Q 013184 351 NLSKSVAVLKGNLGAIRSIRF-TSDGNFMAMAEPADFVHVYDAKNGFE 397 (448)
Q Consensus 351 ~~~~~~~~~~~~~~~v~~l~~-sp~g~~l~s~~~d~~v~vwd~~~~~~ 397 (448)
++.+..+..+.. +.+++| +|+++.|++++.++ +.-++..+...
T Consensus 246 --g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 246 --GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp --SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred --CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 667777777777 899999 68999999988764 66667666543
No 190
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.50 E-value=6.7e-13 Score=127.56 Aligned_cols=171 Identities=12% Similarity=0.030 Sum_probs=132.4
Q ss_pred ceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce-----------EEEEeecCCCeeEEEECCCCCEEEEEecCCcEEE
Q 013184 236 ITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ-----------LSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGIL 304 (448)
Q Consensus 236 ~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~-----------~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 304 (448)
.++.+++ ++..+ ++++|+.+ .+++|++...+ ......++. |..++| ++++|+++ .++.|++
T Consensus 39 ~~nlLai--s~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDI--SNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEE--ETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred cccEEEE--cCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence 3567777 66666 78888877 56669875433 223445677 999999 89999998 8899999
Q ss_pred EECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCC
Q 013184 305 VDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA 384 (448)
Q Consensus 305 ~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d 384 (448)
||+.+......+..|...+.++.+.+. .+++++.||.|.+||+.. ..... +...|++++|||+| ++.|..|
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~-~~~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRT-KSTKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTT-CCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred EEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccC-Ccccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 999887766667778888888877754 388999999999999975 33332 34579999999999 7889999
Q ss_pred CeEEEEECCCCce--eeee------e---cCcCceEEEEEccCCCeEEEE
Q 013184 385 DFVHVYDAKNGFE--KEQE------I---DFFGEISGMTFSPDTEALFIG 423 (448)
Q Consensus 385 ~~v~vwd~~~~~~--~~~~------~---~~~~~v~~~~fspdg~~L~~~ 423 (448)
|.|++|+...+.. ...+ . +|...|.+|+|.+++++|++=
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 9999998877654 3334 1 367889999999999988864
No 191
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.50 E-value=2.4e-11 Score=113.81 Aligned_cols=236 Identities=14% Similarity=0.182 Sum_probs=156.3
Q ss_pred EEEEe--cCCEEEE-------EeCCCeEEEEEcCCCCceeEEEe-ecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEE
Q 013184 195 STLAV--RDNLLIA-------GGFQGELICKYLDQPGVSFCSRT-TYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDF 264 (448)
Q Consensus 195 ~~l~~--~~~~lvs-------g~~dg~i~vw~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iw 264 (448)
.++++ +++++++ +..++.|.+|+..+......... .......+..+ ..+++++.+++ ++....|.+|
T Consensus 21 ~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i--~~~~~~g~l~v-~~~~~~l~~~ 97 (314)
T 1pjx_A 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGC--QCDRDANQLFV-ADMRLGLLVV 97 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEE--EECSSSSEEEE-EETTTEEEEE
T ss_pred cCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceE--EEecCCCcEEE-EECCCCEEEE
Confidence 45555 6777777 67889999999776553211100 00011223344 44787233444 4444579999
Q ss_pred ecCCceEEEE-ee-----cCCCeeEEEECCCCCEEEEEecC---------------CcEEEEECCCCceeEeeecCCCcE
Q 013184 265 DMERFQLSKH-FS-----FPWPVNHTSLSPDGKLLVIVGDN---------------PEGILVDSQTGKAIMPLCGHLDFS 323 (448)
Q Consensus 265 d~~~~~~~~~-~~-----~~~~v~~~~~sp~~~~l~~~~~d---------------~~i~i~d~~~~~~~~~l~~h~~~v 323 (448)
+.. ++.... .. ....++++++.|+|+++++...+ +.|..++.. ++.... ..+....
T Consensus 98 d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~~~~~~~ 174 (314)
T 1pjx_A 98 QTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-DTAFQFP 174 (314)
T ss_dssp ETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-EEEESSE
T ss_pred eCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-ccCCCCc
Confidence 998 776543 32 12358899999999888776654 567778766 554333 2334456
Q ss_pred EEEEEc----CCCCEEEEE-eCCCcEEEEEccCCCc-----ceEEEccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 013184 324 FASAWH----PDGRIFATG-NQDKTCRVWDVRNLSK-----SVAVLKGNL-GAIRSIRFTSDGNFMAMAEPADFVHVYDA 392 (448)
Q Consensus 324 ~~~~~~----p~g~~l~s~-~~d~~i~iwd~~~~~~-----~~~~~~~~~-~~v~~l~~sp~g~~l~s~~~d~~v~vwd~ 392 (448)
..++|+ |+|+.|+.+ ..++.|.+|++...+. ....+..+. ..+..++++++|+++++...++.|.+||.
T Consensus 175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~ 254 (314)
T 1pjx_A 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcC
Confidence 889999 999765555 5678999999862132 222333343 56788999999998888878889999998
Q ss_pred CCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEEEecc
Q 013184 393 KNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYNRC 438 (448)
Q Consensus 393 ~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~~~ 438 (448)
.+++....+..+...+.+++|+|+|+.|+++.... +.+..+...
T Consensus 255 ~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~--~~l~~~~~~ 298 (314)
T 1pjx_A 255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN--NAVWKFEWQ 298 (314)
T ss_dssp TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT--TEEEEEECS
T ss_pred CCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCC--CeEEEEeCC
Confidence 87776655655667899999999999888776542 466666543
No 192
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.50 E-value=5e-12 Score=119.75 Aligned_cols=222 Identities=11% Similarity=0.075 Sum_probs=146.9
Q ss_pred eEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceE
Q 013184 194 VSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQL 271 (448)
Q Consensus 194 i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~ 271 (448)
|.++++ ++..++..+.++.++.|.- . . ...+. .+......+.+ +++|. +++++..++.|.+||..+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~~~-~~~~~~~~~~~--~~~g~-l~~~~~~~~~i~~~d~~~~~~ 78 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTITA---E-P-WLEIS-KKGLQLEGLNF--DRQGQ-LFLLDVFEGNIFKINPETKEI 78 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEEEC---E-E-EEEEE-SSCCCEEEEEE--CTTSC-EEEEETTTCEEEEECTTTCCE
T ss_pred cceeeecCCccceeEEeecccCccccc---c-e-eEEEe-ccCccccCcEE--CCCCC-EEEEECCCCEEEEEeCCCCcE
Confidence 445555 4445555677788888821 1 1 12222 22233345555 78876 677778889999999998887
Q ss_pred EEEe-ecCCCeeEEEECCCCCEEEEEecC----CcEEEEECCCCceeEeee--cCCCcEEEEEEcCCCCEEEEEeC----
Q 013184 272 SKHF-SFPWPVNHTSLSPDGKLLVIVGDN----PEGILVDSQTGKAIMPLC--GHLDFSFASAWHPDGRIFATGNQ---- 340 (448)
Q Consensus 272 ~~~~-~~~~~v~~~~~sp~~~~l~~~~~d----~~i~i~d~~~~~~~~~l~--~h~~~v~~~~~~p~g~~l~s~~~---- 340 (448)
.... .+...+.+++++|+|+++++...+ +.|.+||..+++....+. .+...+..++++|+|+++++...
T Consensus 79 ~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~ 158 (333)
T 2dg1_A 79 KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYST 158 (333)
T ss_dssp EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTT
T ss_pred EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccccc
Confidence 6655 366789999999999988777666 689999998877653333 24567899999999998777654
Q ss_pred --CCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCC-Cceeee-----eecCc--CceE
Q 013184 341 --DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMA-EPADFVHVYDAKN-GFEKEQ-----EIDFF--GEIS 409 (448)
Q Consensus 341 --d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~-~~d~~v~vwd~~~-~~~~~~-----~~~~~--~~v~ 409 (448)
.+.|..++.. +..+..+......+..++|+|+|++|+.+ ..++.|.+|++.+ +..... ..... ..+.
T Consensus 159 ~~~~~l~~~~~~--~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 236 (333)
T 2dg1_A 159 NPLGGVYYVSPD--FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPD 236 (333)
T ss_dssp BCCEEEEEECTT--SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEE
T ss_pred CCCceEEEEeCC--CCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCC
Confidence 2344455543 22333343344567899999999876555 4578999999864 332211 11111 4688
Q ss_pred EEEEccCCCeEEEEEec
Q 013184 410 GMTFSPDTEALFIGVWD 426 (448)
Q Consensus 410 ~~~fspdg~~L~~~~~D 426 (448)
+++++++|+++++...+
T Consensus 237 ~i~~d~~G~l~v~~~~~ 253 (333)
T 2dg1_A 237 SCCIDSDDNLYVAMYGQ 253 (333)
T ss_dssp EEEEBTTCCEEEEEETT
T ss_pred ceEECCCCCEEEEEcCC
Confidence 99999999866655444
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.50 E-value=1.3e-11 Score=113.00 Aligned_cols=233 Identities=12% Similarity=0.119 Sum_probs=150.9
Q ss_pred ceeeeCCCCeEEE-e--cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCC
Q 013184 137 NLVWSTSKHDVYL-M--SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQG 211 (448)
Q Consensus 137 ~l~~~~~~~~v~~-~--~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg 211 (448)
.+.+.+. +.+|+ + .++.|..|+..+.... .....+.. .+.+|++ +++++++.. ++
T Consensus 28 ~i~~~~~-g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~-----------------~p~~i~~~~~g~l~v~~~-~~ 87 (270)
T 1rwi_B 28 GVAVDSA-GNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLY-----------------QPQGLAVDGAGTVYVTDF-NN 87 (270)
T ss_dssp EEEECTT-CCEEEEECSSSCEEEEECC-----E-ECCCCSCC-----------------SCCCEEECTTCCEEEEET-TT
T ss_pred ceEECCC-CCEEEEccCCCCcEEEecCCCcccc-eEeeCCcC-----------------CcceeEECCCCCEEEEcC-CC
Confidence 3344444 45777 5 3567999986443221 11111101 2355666 567666655 88
Q ss_pred eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCC
Q 013184 212 ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDG 290 (448)
Q Consensus 212 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~ 290 (448)
.|.+|+....... .........+..+.+ .++|. ++++...++.|.+|+..+........ ....+.+++++|+|
T Consensus 88 ~i~~~d~~~~~~~---~~~~~~~~~p~~i~~--~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g 161 (270)
T 1rwi_B 88 RVVTLAAGSNNQT---VLPFDGLNYPEGLAV--DTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG 161 (270)
T ss_dssp EEEEECTTCSCCE---ECCCCSCSSEEEEEE--CTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC
T ss_pred EEEEEeCCCceEe---eeecCCcCCCcceEE--CCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCC
Confidence 9999987654422 121122233445544 78775 66666667889999876544332222 23467899999999
Q ss_pred CEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEE
Q 013184 291 KLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIR 370 (448)
Q Consensus 291 ~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 370 (448)
+++++...++.|.+|+...+........+...+..++++|+|.++++...++.|.+|+... .........+...+.+++
T Consensus 162 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~-~~~~~~~~~~~~~p~~i~ 240 (270)
T 1rwi_B 162 NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS-TTSTVLPFTGLNTPLAVA 240 (270)
T ss_dssp CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC-SCCEECCCCSCSCEEEEE
T ss_pred CEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC-CcceeeccCCCCCceeEE
Confidence 9777777788999999887765544334446788999999998777777788999999864 322222223335689999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCc
Q 013184 371 FTSDGNFMAMAEPADFVHVYDAKNGF 396 (448)
Q Consensus 371 ~sp~g~~l~s~~~d~~v~vwd~~~~~ 396 (448)
++|+|+++++...++.|++|++...+
T Consensus 241 ~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 241 VDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp ECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 99999988888889999999987654
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.49 E-value=3.6e-12 Score=117.83 Aligned_cols=170 Identities=11% Similarity=0.099 Sum_probs=137.5
Q ss_pred eeEEEEeCCCcEEEEecCCceEEEEeecC--CCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCC-CcEEEE
Q 013184 250 IHFMASNNDCGVRDFDMERFQLSKHFSFP--WPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHL-DFSFAS 326 (448)
Q Consensus 250 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-~~v~~~ 326 (448)
.+|++++.++.|.+||.++++.+..+... ..+.++.++|+|++++ +.++.|..||. +|+.+..+..+. ..+.++
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~ 82 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTA 82 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEE
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccccc
Confidence 48999999999999999999999999843 4789999999999888 45678999998 899999888653 578899
Q ss_pred EEcCCCCEEEEEeC-CCcEEEEEccCCCcceEEEcc------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee
Q 013184 327 AWHPDGRIFATGNQ-DKTCRVWDVRNLSKSVAVLKG------NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKE 399 (448)
Q Consensus 327 ~~~p~g~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~------~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~ 399 (448)
.+.|+|+++++.+. ++.|..+|. . ++.+..+.. +......+++.++|++|++...++.|.+||.. |+.+.
T Consensus 83 ~~~~dG~~lv~~~~~~~~v~~vd~-~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w 159 (276)
T 3no2_A 83 RILPDGNALVAWCGHPSTILEVNM-K-GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLN 159 (276)
T ss_dssp EECTTSCEEEEEESTTEEEEEECT-T-SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred EECCCCCEEEEecCCCCEEEEEeC-C-CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEE
Confidence 99999999999887 666766665 3 666655542 22245567889999999999999999999987 88887
Q ss_pred eeecCcCceEEEEEccCCCeEEEEEec
Q 013184 400 QEIDFFGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 400 ~~~~~~~~v~~~~fspdg~~L~~~~~D 426 (448)
++... ..+.++.+.++|..|+++..+
T Consensus 160 ~~~~~-~~~~~~~~~~~g~~~v~~~~~ 185 (276)
T 3no2_A 160 SVKLS-GTPFSSAFLDNGDCLVACGDA 185 (276)
T ss_dssp EEECS-SCCCEEEECTTSCEEEECBTT
T ss_pred EEECC-CCccceeEcCCCCEEEEeCCC
Confidence 76653 456778889999988876554
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.47 E-value=1.1e-11 Score=129.73 Aligned_cols=234 Identities=12% Similarity=0.012 Sum_probs=151.1
Q ss_pred eeEEEEe--cCCEEE-----EEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCc-----
Q 013184 193 QVSTLAV--RDNLLI-----AGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCG----- 260 (448)
Q Consensus 193 ~i~~l~~--~~~~lv-----sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~----- 260 (448)
.+.++++ +|++|+ .|+.+..|++|++.++.......+. ......+. |+|+|. .|+.++.+..
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~---~~~~~~~~--wspDg~-~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE---GGKYATPK--WTPDSK-GFYYEWLPTDPSIKV 195 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS---CCTTCCCE--ECTTSS-EEEEEECCCCTTSCG
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC---cccccceE--EecCCC-EEEEEEecCCCCCcc
Confidence 4666666 889888 4445578999999887642001111 11113444 489987 6666666665
Q ss_pred --------EEEEecCCce----EEEEee-cCCCeeEEEECCCCCEEEEEecCC----cEEEEECCCCceeEeeecCCCcE
Q 013184 261 --------VRDFDMERFQ----LSKHFS-FPWPVNHTSLSPDGKLLVIVGDNP----EGILVDSQTGKAIMPLCGHLDFS 323 (448)
Q Consensus 261 --------v~iwd~~~~~----~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~----~i~i~d~~~~~~~~~l~~h~~~v 323 (448)
|++|++.+++ ++.... +...+..+.|+|+|++|++++.++ .|.+|+..+++ ...+..+...+
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~ 274 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAK 274 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCC
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCce
Confidence 9999998765 222222 445788999999999998887665 67777766554 44455566666
Q ss_pred EEEEEcCCCCEEEEEe---CCCcEEEEEccCCCcc--eEEEccC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CC
Q 013184 324 FASAWHPDGRIFATGN---QDKTCRVWDVRNLSKS--VAVLKGN--LGAIRSIRFTSDGNFMAMAEPADFVHVYDAK-NG 395 (448)
Q Consensus 324 ~~~~~~p~g~~l~s~~---~d~~i~iwd~~~~~~~--~~~~~~~--~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~-~~ 395 (448)
....| |+|.++++++ .++.|.+||+.+ +.. ...+..+ ...+..++|+ ++.++++...++..+||.+. ++
T Consensus 275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~-~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g 351 (695)
T 2bkl_A 275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAK-PARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG 351 (695)
T ss_dssp EEEEE-ETTEEEEEECTTCTTCEEEEEBTTB-CSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred EEEEe-cCCcEEEEECCCCCCCEEEEEeCCC-CCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence 66667 5566444444 257899999875 332 2334333 4468888998 67788888889887777554 35
Q ss_pred ceeeeeecC-cCceEEEEEccCCCeEEEEEecC-CcceEEEEe
Q 013184 396 FEKEQEIDF-FGEISGMTFSPDTEALFIGVWDR-TYGSLLQYN 436 (448)
Q Consensus 396 ~~~~~~~~~-~~~v~~~~fspdg~~L~~~~~D~-~~~~ll~~~ 436 (448)
.....+..+ .+.+.+++++|+++.|+...... +-+.+..++
T Consensus 352 ~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d 394 (695)
T 2bkl_A 352 KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTS 394 (695)
T ss_dssp CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEE
T ss_pred CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 545444433 56788899999998777554332 223444443
No 196
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.47 E-value=4.3e-11 Score=111.74 Aligned_cols=226 Identities=13% Similarity=0.125 Sum_probs=153.5
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeec--
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSF-- 277 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-- 277 (448)
.+.++++....+.|..|+..+.... .. .....+.++.+ +++|. + +++. +..|.+||.++++.......
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~---~~--~~~~~~~~i~~--~~dG~-l-~v~~-~~~l~~~d~~~g~~~~~~~~~~ 93 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQ---RV--TMDAPVSSVAL--RQSGG-Y-VATI-GTKFCALNWKEQSAVVLATVDN 93 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEE---EE--ECSSCEEEEEE--BTTSS-E-EEEE-TTEEEEEETTTTEEEEEEECCT
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE---EE--eCCCceEEEEE--CCCCC-E-EEEE-CCeEEEEECCCCcEEEEEecCC
Confidence 4567777788899999998765532 11 12234555554 88887 3 4444 56899999988876544432
Q ss_pred ---CCCeeEEEECCCCCEEEEEecC---------CcEEEEECCC-CceeEeeecCCCcEEEEEEcCCCCEEEE-EeCCCc
Q 013184 278 ---PWPVNHTSLSPDGKLLVIVGDN---------PEGILVDSQT-GKAIMPLCGHLDFSFASAWHPDGRIFAT-GNQDKT 343 (448)
Q Consensus 278 ---~~~v~~~~~sp~~~~l~~~~~d---------~~i~i~d~~~-~~~~~~l~~h~~~v~~~~~~p~g~~l~s-~~~d~~ 343 (448)
...++.++++|+|+++++.... ....||.+.. ++.. .+..+......++|+|+++.|+. .+..+.
T Consensus 94 ~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~ 172 (297)
T 3g4e_A 94 DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFDQVDISNGLDWSLDHKIFYYIDSLSYS 172 (297)
T ss_dssp TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEEEESBEEEEEECTTSCEEEEEEGGGTE
T ss_pred CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE-EEeeccccccceEEcCCCCEEEEecCCCCc
Confidence 1347889999999976654321 2234444432 3332 23334456788999999986654 455788
Q ss_pred EEEEEcc-CCCcc-----eEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEc-cC
Q 013184 344 CRVWDVR-NLSKS-----VAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFS-PD 416 (448)
Q Consensus 344 i~iwd~~-~~~~~-----~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fs-pd 416 (448)
|.+|++. ..+.. +..+..+.+.+..++++++|++.++....+.|.+||..+++.+..+..+...+++++|. |+
T Consensus 173 i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d 252 (297)
T 3g4e_A 173 VDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKN 252 (297)
T ss_dssp EEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGG
T ss_pred EEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCC
Confidence 9999974 21322 22233344567899999999888887778899999998888887777666789999998 99
Q ss_pred CCeEEEEEecCC-----------cceEEEEe
Q 013184 417 TEALFIGVWDRT-----------YGSLLQYN 436 (448)
Q Consensus 417 g~~L~~~~~D~~-----------~~~ll~~~ 436 (448)
++.|++++.... -|.++.+.
T Consensus 253 ~~~L~vt~~~~~~~~~~~~~~p~~G~~f~~~ 283 (297)
T 3g4e_A 253 YSEMYVTCARDGMDPEGLLRQPEAGGIFKIT 283 (297)
T ss_dssp GCEEEEEEBCTTCCHHHHHHCTTTTCEEEEE
T ss_pred CCEEEEEcCCcCCChhHccCCCCCceEEEec
Confidence 999988876432 36677765
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.46 E-value=1.9e-10 Score=106.56 Aligned_cols=218 Identities=12% Similarity=0.058 Sum_probs=150.3
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
.+.++++ +++++++...++.|.+|+.. .... .... ......+..+.+ .++|. ++++...++.|..|+.. ++
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~-~~~~~~~~~i~~--~~~g~-l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPL-PTPDAKVMCLTI--SSDGE-VWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEEC-SSTTCCEEEEEE--CTTSC-EEEEETTTTEEEEECTT-SC
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecC-CcccCceeeEEE--CCCCC-EEEeCCCCCeEEEECCC-Cc
Confidence 4678877 66777766668899999987 3321 1111 112233444444 78775 55655557889999986 44
Q ss_pred EEEEee---cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEe-eecCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 013184 271 LSKHFS---FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMP-LCGHLDFSFASAWHPDGRIFATGNQDKTCRV 346 (448)
Q Consensus 271 ~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~-l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~i 346 (448)
. ..+. ....+.++++.|+|+++++...++.|..||. +++.... +..+...+..++++|+|+++++....+.|..
T Consensus 89 ~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 166 (299)
T 2z2n_A 89 I-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR 166 (299)
T ss_dssp E-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred E-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence 3 2222 3456889999999988887777889999998 5554332 2334567899999999988887777788999
Q ss_pred EEccCCCcceEE-EccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee-eecCcCceEEEEEccCCCeEEE
Q 013184 347 WDVRNLSKSVAV-LKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ-EIDFFGEISGMTFSPDTEALFI 422 (448)
Q Consensus 347 wd~~~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~fspdg~~L~~ 422 (448)
||. + ++.... +......+..++++++|++.++....+.|.+||. ++..... .......+.+++++++|+..++
T Consensus 167 ~~~-~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 167 ITE-S-GDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp ECT-T-CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EcC-C-CcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEe
Confidence 998 4 443322 3334556889999999997777666789999998 6654322 2224467999999999985444
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.45 E-value=6.6e-10 Score=102.93 Aligned_cols=256 Identities=11% Similarity=0.021 Sum_probs=166.2
Q ss_pred eeCCCCeEEEec--CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEE
Q 013184 140 WSTSKHDVYLMS--HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELIC 215 (448)
Q Consensus 140 ~~~~~~~v~~~~--~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~v 215 (448)
.....+.+|++. ++.|..|+.. +.... ..+..+. ..+.++++ +++++++...++.|..
T Consensus 26 ~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~----------------~~~~~i~~~~~g~l~v~~~~~~~v~~ 87 (300)
T 2qc5_A 26 TSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPD----------------AKVMCLIVSSLGDIWFTENGANKIGK 87 (300)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTT----------------CCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred eECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCC----------------CcceeEEECCCCCEEEEecCCCeEEE
Confidence 333445577764 4679999976 44433 2222111 13677777 5677777666888999
Q ss_pred EEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEE-ee-cCCCeeEEEECCCCCEE
Q 013184 216 KYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKH-FS-FPWPVNHTSLSPDGKLL 293 (448)
Q Consensus 216 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~-~~~~v~~~~~sp~~~~l 293 (448)
++.. .... .... ......+..+.+ .++|. ++++...++.|..++.. ++.... +. ....+.++++.+++++.
T Consensus 88 ~d~~-g~~~-~~~~-~~~~~~~~~i~~--~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~ 160 (300)
T 2qc5_A 88 LSKK-GGFT-EYPL-PQPDSGPYGITE--GLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALW 160 (300)
T ss_dssp ECTT-SCEE-EEEC-SSTTCCEEEEEE--CSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEE
T ss_pred ECCC-CCeE-EecC-CCCCCCCccceE--CCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEE
Confidence 9876 3321 1111 112233445544 77775 56666557889999987 555432 22 34568899999999966
Q ss_pred EEEecCCcEEEEECCCCceeEe-eecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceE-EEccCCCCeEEEEE
Q 013184 294 VIVGDNPEGILVDSQTGKAIMP-LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVA-VLKGNLGAIRSIRF 371 (448)
Q Consensus 294 ~~~~~d~~i~i~d~~~~~~~~~-l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~l~~ 371 (448)
++...++.|..++. +++.... +..+...+..++++++|+++++....+.|.+|+. . +.... .+..+...+.++++
T Consensus 161 v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~-g~~~~~~~~~~~~~~~~i~~ 237 (300)
T 2qc5_A 161 FTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-T-GEISEYDIPTPNARPHAITA 237 (300)
T ss_dssp EEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T-CCEEEEECSSTTCCEEEEEE
T ss_pred EEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-C-CcEEEEECCCCCCCceEEEE
Confidence 66666788999998 5654432 2234567889999999987777666778999998 3 33332 23334567889999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCceeee-eecCcCceEEEEEccCCCeEEEEEe
Q 013184 372 TSDGNFMAMAEPADFVHVYDAKNGFEKEQ-EIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 372 sp~g~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
+++|+..++...++.|..|+. ++..... .......+.+++++++|+.. ++..
T Consensus 238 d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~-v~~~ 290 (300)
T 2qc5_A 238 GKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVW-FALK 290 (300)
T ss_dssp CSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEE-EECS
T ss_pred CCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEE-EEcc
Confidence 999997666656789999997 4543322 22234568999999999844 4443
No 199
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.44 E-value=1.8e-10 Score=116.89 Aligned_cols=215 Identities=12% Similarity=0.023 Sum_probs=152.1
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecC--CceEEEEeec
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDME--RFQLSKHFSF 277 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~--~~~~~~~~~~ 277 (448)
.+.++++...++.|.++|..+..... .+... ..+..+. ++|+|. ++++++.++.|.+||+. +++.+..+..
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~--~i~~g--~~p~~v~--~SpDGr-~lyv~~~dg~V~viD~~~~t~~~v~~i~~ 238 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKT--VLDTG--YAVHISR--LSASGR-YLFVIGRDGKVNMIDLWMKEPTTVAEIKI 238 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEE--EEECS--SCEEEEE--ECTTSC-EEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEE--EEeCC--CCccceE--ECCCCC-EEEEEcCCCeEEEEECCCCCCcEeEEEec
Confidence 45567778889999999998876542 22222 1233444 499987 67777889999999995 8888888886
Q ss_pred CCCeeEEEEC----CCCCEEEEEec-CCcEEEEECCCCceeEeeec----------CCC-cEEEEEEcCCCCE-EEEEeC
Q 013184 278 PWPVNHTSLS----PDGKLLVIVGD-NPEGILVDSQTGKAIMPLCG----------HLD-FSFASAWHPDGRI-FATGNQ 340 (448)
Q Consensus 278 ~~~v~~~~~s----p~~~~l~~~~~-d~~i~i~d~~~~~~~~~l~~----------h~~-~v~~~~~~p~g~~-l~s~~~ 340 (448)
......++|+ |+|++++++.. .+.+.++|..+.+.+..+.. |.. .+..+..++++.. ++....
T Consensus 239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 6667899999 69999888764 58999999999998877652 112 5778888987664 444456
Q ss_pred CCcEEEEEccCCCcc-eEEEccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeeeec-----CcCceEEEE-
Q 013184 341 DKTCRVWDVRNLSKS-VAVLKGNLGAIRSIRFTSDGNFMAMAE-PADFVHVYDAKNGFEKEQEID-----FFGEISGMT- 412 (448)
Q Consensus 341 d~~i~iwd~~~~~~~-~~~~~~~~~~v~~l~~sp~g~~l~s~~-~d~~v~vwd~~~~~~~~~~~~-----~~~~v~~~~- 412 (448)
.|.|.++|....... +..+ ........+.|+|+|++++++. .++.|.++|+.+++....+.- |.+. ++.
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~--g~~~ 395 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR--GANF 395 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT--CEEE
T ss_pred CCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcc--ceee
Confidence 789999998653222 2222 2334577899999999987765 568999999999887655432 3322 223
Q ss_pred EccCCCeEEEEE
Q 013184 413 FSPDTEALFIGV 424 (448)
Q Consensus 413 fspdg~~L~~~~ 424 (448)
++|++..+++.+
T Consensus 396 ~~p~~g~v~~t~ 407 (567)
T 1qks_A 396 VHPTFGPVWATS 407 (567)
T ss_dssp EETTTEEEEEEE
T ss_pred ECCCCCcEEEeC
Confidence 578755555433
No 200
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.41 E-value=1e-10 Score=114.34 Aligned_cols=226 Identities=11% Similarity=0.072 Sum_probs=148.8
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC--cEEEEecCC
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC--GVRDFDMER 268 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg--~v~iwd~~~ 268 (448)
....|++ +++++++...++.|++|++........ ... ..... +.+ ++++. .|+++..++ .|.+++...
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~---~~~-~~~~~-ia~--~~~g~-~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV---HPG-FKGGK-PAV--TKDKQ-RVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE---EET-CCBCB-CEE--CTTSS-EEEEEBSSTTCEEEEEEGGG
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe---ecc-CCCCc-eeE--ecCCC-cEEEEecCCCceEEEEEcCC
Confidence 4566666 677777777789999999876543322 112 12222 444 88887 566666554 788998876
Q ss_pred ceEEEEe----e-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEe----eecCCCcE-E-EEEEcCC-CCEEE
Q 013184 269 FQLSKHF----S-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMP----LCGHLDFS-F-ASAWHPD-GRIFA 336 (448)
Q Consensus 269 ~~~~~~~----~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~----l~~h~~~v-~-~~~~~p~-g~~l~ 336 (448)
+.....+ . ....+.+++++|++..|+++..++.|+.||..++..... ..++.... . .++|+|+ +.+++
T Consensus 204 ~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 5443333 2 445678999999555566677788999999987764322 22222222 3 8999995 55666
Q ss_pred EEeCCCcEEEEEccCCCcceEEEccCC---------------CCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeee
Q 013184 337 TGNQDKTCRVWDVRNLSKSVAVLKGNL---------------GAIRSIRFTSDGNFMAMAE-PADFVHVYDAKNGFEKEQ 400 (448)
Q Consensus 337 s~~~d~~i~iwd~~~~~~~~~~~~~~~---------------~~v~~l~~sp~g~~l~s~~-~d~~v~vwd~~~~~~~~~ 400 (448)
+-...+.|+.|+... . +..+.++. .....++++|+|+++++-. .++.|+.|++.++.. ..
T Consensus 284 ~d~~~~~I~~~~~~g--~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~ 359 (409)
T 3hrp_A 284 SDQNLSSVYKITPDG--E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-ST 359 (409)
T ss_dssp EETTTTEEEEECTTC--C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EE
T ss_pred EeCCCCEEEEEecCC--C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EE
Confidence 666778899998753 2 33343332 3478999999999777766 788999999877754 33
Q ss_pred eecC---------------cCceEEEEEccCCCeEEEEEecCCcc
Q 013184 401 EIDF---------------FGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 401 ~~~~---------------~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
+.++ ...+.+++++|+|.++++-..+..+.
T Consensus 360 ~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir 404 (409)
T 3hrp_A 360 VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIR 404 (409)
T ss_dssp EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEE
T ss_pred EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEE
Confidence 3333 35689999999976555444444433
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.40 E-value=5.5e-11 Score=124.52 Aligned_cols=191 Identities=12% Similarity=-0.003 Sum_probs=128.0
Q ss_pred EEEeCCCCCeeEEEEeC----CCcEEEEecCCceEE-EEeecCCCeeEEEECCCCCEEEEEecCCc-------------E
Q 013184 241 EIYNSPSGGIHFMASNN----DCGVRDFDMERFQLS-KHFSFPWPVNHTSLSPDGKLLVIVGDNPE-------------G 302 (448)
Q Consensus 241 ~~~~~~~~~~~l~s~s~----dg~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~-------------i 302 (448)
.+.++|+|+.++++.+. +..|++||+.+++.+ ...........++|+|+|+.|+.++.+.. |
T Consensus 125 ~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v 204 (695)
T 2bkl_A 125 TWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTI 204 (695)
T ss_dssp EEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEE
T ss_pred EEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEE
Confidence 34459999855555443 457999999998865 21111112268999999999999988765 9
Q ss_pred EEEECCCCc----eeEeeecCCCcEEEEEEcCCCCEEEEEeCCC----cEEEEEccCCCcceEEEccCCCCeEEEEEcCC
Q 013184 303 ILVDSQTGK----AIMPLCGHLDFSFASAWHPDGRIFATGNQDK----TCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSD 374 (448)
Q Consensus 303 ~i~d~~~~~----~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~ 374 (448)
++|++.+++ .+.....|...+..+.|+|||++|+.++.++ .|.+|+.. ......+..+...+....| ++
T Consensus 205 ~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~~~-~~ 281 (695)
T 2bkl_A 205 RYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG--EKDFRLLVKGVGAKYEVHA-WK 281 (695)
T ss_dssp EEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT--CSSCEEEEECSSCCEEEEE-ET
T ss_pred EEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC--CCceEEeecCCCceEEEEe-cC
Confidence 999999876 3333344667889999999999888877665 56666543 3345566666666677777 56
Q ss_pred CCEEEEEe---CCCeEEEEECCCCce--eeeeecC--cCceEEEEEccCCCeEEEEEecCCcceEEEEe
Q 013184 375 GNFMAMAE---PADFVHVYDAKNGFE--KEQEIDF--FGEISGMTFSPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 375 g~~l~s~~---~d~~v~vwd~~~~~~--~~~~~~~--~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~ 436 (448)
|++++.+. .++.|.+||+.++.. ...+..+ ...+.+++|+ ++..+++...|+. ..+..+.
T Consensus 282 g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~ 348 (695)
T 2bkl_A 282 DRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT-SEVRVAT 348 (695)
T ss_dssp TEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE-EEEEEEE
T ss_pred CcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEe
Confidence 66444443 257899999987653 2344443 3458889998 6666666666654 3444443
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.39 E-value=5.8e-10 Score=104.28 Aligned_cols=235 Identities=11% Similarity=0.092 Sum_probs=150.2
Q ss_pred cceeeeCCCCeEEEe---------cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEE
Q 013184 136 RNLVWSTSKHDVYLM---------SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLL 204 (448)
Q Consensus 136 r~l~~~~~~~~v~~~---------~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~l 204 (448)
..+.+.+ .+.+|++ .++.|.+|+..+++...+.. .. .. + ....+.++++ ++..|
T Consensus 21 ~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~-~~------~------~~~~~~~i~~~~~~g~l 85 (314)
T 1pjx_A 21 EGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PE-VN------G------YGGIPAGCQCDRDANQL 85 (314)
T ss_dssp EEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CE-ET------T------EECCEEEEEECSSSSEE
T ss_pred cCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-cc-cC------C------CCCCCceEEEecCCCcE
Confidence 3445553 4456665 35679999977666544321 00 00 0 0123677777 41344
Q ss_pred EEEeCCCeEEEEEcCCCCceeEEEe-ecC----CCCceeeEEEEeCCCCCeeEEEEeCC---------------CcEEEE
Q 013184 205 IAGGFQGELICKYLDQPGVSFCSRT-TYD----ENAITNAVEIYNSPSGGIHFMASNND---------------CGVRDF 264 (448)
Q Consensus 205 vsg~~dg~i~vw~~~~~~~~~~~~~-~~~----~~~~~~~v~~~~~~~~~~~l~s~s~d---------------g~v~iw 264 (448)
..++..+.|.+|+.. .... .+ ... ....++.+.+ .++|. ++++...+ +.|..|
T Consensus 86 ~v~~~~~~l~~~d~~-g~~~---~~~~~~~~~~~~~~~~~i~~--d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (314)
T 1pjx_A 86 FVADMRLGLLVVQTD-GTFE---EIAKKDSEGRRMQGCNDCAF--DYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCF 158 (314)
T ss_dssp EEEETTTEEEEEETT-SCEE---ECCSBCTTSCBCBCCCEEEE--CTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred EEEECCCCEEEEeCC-CCEE---EEEeccCCCccccCCcCEEE--CCCCC-EEEEecCcccccccccccccCCCCeEEEE
Confidence 555545578889887 4321 11 111 1122445544 88876 55555444 578888
Q ss_pred ecCCceEEEEeecCCCeeEEEEC----CCCCEEEEE-ecCCcEEEEECC-CCc-----eeEeeecCC-CcEEEEEEcCCC
Q 013184 265 DMERFQLSKHFSFPWPVNHTSLS----PDGKLLVIV-GDNPEGILVDSQ-TGK-----AIMPLCGHL-DFSFASAWHPDG 332 (448)
Q Consensus 265 d~~~~~~~~~~~~~~~v~~~~~s----p~~~~l~~~-~~d~~i~i~d~~-~~~-----~~~~l~~h~-~~v~~~~~~p~g 332 (448)
+.. ++...........+.++++ |+++.++++ ..++.|.+|+.. +++ ....+.++. ..+..++++++|
T Consensus 159 ~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G 237 (314)
T 1pjx_A 159 TTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN 237 (314)
T ss_dssp CTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred CCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC
Confidence 876 6655444444557899999 999766655 467899999976 444 223334444 667889999999
Q ss_pred CEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC
Q 013184 333 RIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAE-PADFVHVYDAKN 394 (448)
Q Consensus 333 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~-~d~~v~vwd~~~ 394 (448)
+++++...++.|.+||..+ ++.+..+..+...+.+++|+|+|++|++++ .++.|..|++..
T Consensus 238 ~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 238 NLLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CEEEEEETTTEEEEECTTC-BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CEEEEEcCCCEEEEEcCCC-CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9888887888999999864 455566666667899999999999665554 557899999865
No 203
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.39 E-value=2.3e-09 Score=103.34 Aligned_cols=258 Identities=9% Similarity=-0.073 Sum_probs=161.2
Q ss_pred CCCCeEEEecC--C----eEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEe-------
Q 013184 142 TSKHDVYLMSH--F----SIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGG------- 208 (448)
Q Consensus 142 ~~~~~v~~~~~--~----~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~------- 208 (448)
+..+.+|.+.. . .|.++|..+.+....+... .. +=..++.+++.|+++.
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g--~~----------------p~i~~spDg~~lyv~n~~~~~~~ 91 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG--FL----------------PNPVAAHSGSEFALASTSFSRIA 91 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC--CC----------------CCeEECCCCCEEEEEeccccccc
Confidence 45556666542 2 7899998776544333221 11 1134556888888875
Q ss_pred ---CCCeEEEEEcCCCCceeEEEee-cCC---CCceeeEEEEeCCCCCeeEEEEeC-CCcEEEEecCCceEEEE-eecCC
Q 013184 209 ---FQGELICKYLDQPGVSFCSRTT-YDE---NAITNAVEIYNSPSGGIHFMASNN-DCGVRDFDMERFQLSKH-FSFPW 279 (448)
Q Consensus 209 ---~dg~i~vw~~~~~~~~~~~~~~-~~~---~~~~~~v~~~~~~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~-~~~~~ 279 (448)
.++.|.++|..+........+. ... ......+ .++|+|+.++++... ++.|.++| .+++.+.. +..+.
T Consensus 92 rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~--~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~ 168 (373)
T 2mad_H 92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMN--ANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT 168 (373)
T ss_pred cCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccce--EECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc
Confidence 3678999999765543222221 000 1112234 449999844444433 57899999 99999888 76544
Q ss_pred CeeEEEECCCC-CEEEEEecCCcEEEEECCCCceeEeee-----cCCCcE-EEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 013184 280 PVNHTSLSPDG-KLLVIVGDNPEGILVDSQTGKAIMPLC-----GHLDFS-FASAWHPDGRIFATGNQDKTCRVWDVRNL 352 (448)
Q Consensus 280 ~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~l~-----~h~~~v-~~~~~~p~g~~l~s~~~d~~i~iwd~~~~ 352 (448)
. +.+.|++ +.+++.+.|+.+.++|. +++.+.... ....++ ....+.+++..++..+..+.+.+.|+...
T Consensus 169 ~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 169 C---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred e---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence 3 4455654 45666778999999999 887764322 111222 23456666655554457788999998642
Q ss_pred C-cceEEEcc----------CCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCceeeeeecCcCceEEE
Q 013184 353 S-KSVAVLKG----------NLGAIRSIRFTSDGNFMAMAEP----------ADFVHVYDAKNGFEKEQEIDFFGEISGM 411 (448)
Q Consensus 353 ~-~~~~~~~~----------~~~~v~~l~~sp~g~~l~s~~~----------d~~v~vwd~~~~~~~~~~~~~~~~v~~~ 411 (448)
. ..+..+.. .......+.++|+|+.|.++.. .+.|.++|+.+++.+..+. ..+...++
T Consensus 245 ~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i 323 (373)
T 2mad_H 245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAI 323 (373)
T ss_pred cceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeE
Confidence 2 11222211 1123445789999988877653 3579999999988877764 34568999
Q ss_pred EEccCCC-eEEEEEe
Q 013184 412 TFSPDTE-ALFIGVW 425 (448)
Q Consensus 412 ~fspdg~-~L~~~~~ 425 (448)
+|+|||+ .|+++.+
T Consensus 324 ~~s~Dg~~~l~v~~~ 338 (373)
T 2mad_H 324 SVAQDGGPDLYALSA 338 (373)
T ss_pred EECCCCCeEEEEEcC
Confidence 9999999 7777764
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.38 E-value=1.6e-10 Score=121.86 Aligned_cols=236 Identities=11% Similarity=-0.014 Sum_probs=144.6
Q ss_pred EEEEecCCEEEEEeCCCe---EEEEEcCCC---CceeEEE-----eecCCCCceeeEEEEeCCCCCeeEEEEeCCC----
Q 013184 195 STLAVRDNLLIAGGFQGE---LICKYLDQP---GVSFCSR-----TTYDENAITNAVEIYNSPSGGIHFMASNNDC---- 259 (448)
Q Consensus 195 ~~l~~~~~~lvsg~~dg~---i~vw~~~~~---~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg---- 259 (448)
.....+|++++....++. -.+|..... +...... +...+...... +.++|+|+.++++.+..|
T Consensus 112 ~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~--~~~SPDG~~la~~~~~~G~e~~ 189 (741)
T 1yr2_A 112 GLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDA--WAASDDGRLLAYSVQDGGSDWR 189 (741)
T ss_dssp CCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEE--EEECTTSSEEEEEEEETTCSEE
T ss_pred CCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEe--EEECCCCCEEEEEEcCCCCceE
Confidence 333467887776665443 455655432 1111111 11111112333 455999985555554434
Q ss_pred cEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCCc--------------EEEEECCCCce----eEeeecCCC
Q 013184 260 GVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPE--------------GILVDSQTGKA----IMPLCGHLD 321 (448)
Q Consensus 260 ~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~--------------i~i~d~~~~~~----~~~l~~h~~ 321 (448)
.|++||+.+++.+........+..++|+|+ +.|+.++.++. |++|++.+++. +.....+..
T Consensus 190 ~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~ 268 (741)
T 1yr2_A 190 TVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPK 268 (741)
T ss_dssp EEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred EEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCe
Confidence 599999999987654322223467899999 99988876543 88999987762 222223344
Q ss_pred cEEEEEEcCCCCEEEEEeCCC-----cEEEEEccCCCcc-eEEEccCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEE
Q 013184 322 FSFASAWHPDGRIFATGNQDK-----TCRVWDVRNLSKS-VAVLKGNLGAIRSIRFTSDGNFMAMAEPA----DFVHVYD 391 (448)
Q Consensus 322 ~v~~~~~~p~g~~l~s~~~d~-----~i~iwd~~~~~~~-~~~~~~~~~~v~~l~~sp~g~~l~s~~~d----~~v~vwd 391 (448)
.+..+.|+|||++|+..+.++ .|.+||+.+.... ...+..+...+... ++|+|+.|+..+.. +.|.+||
T Consensus 269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d 347 (741)
T 1yr2_A 269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVD 347 (741)
T ss_dssp CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEE
T ss_pred EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEe
Confidence 688999999999888877543 7999999752113 55666666555555 35899988887754 4699999
Q ss_pred CCCCc-eeeeeec-CcCceEEEEEccCCCeEEEEEecCCcceEEEEe
Q 013184 392 AKNGF-EKEQEID-FFGEISGMTFSPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 392 ~~~~~-~~~~~~~-~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~ 436 (448)
+.++. ....+.. +...+.+++|+ ++..+++...|+. ..+..+.
T Consensus 348 ~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~ 392 (741)
T 1yr2_A 348 LSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLAFD 392 (741)
T ss_dssp CSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEEEE
T ss_pred CCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEe
Confidence 88752 3333333 44457778887 4555566665553 3444443
No 205
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.38 E-value=7.5e-10 Score=104.75 Aligned_cols=213 Identities=15% Similarity=0.081 Sum_probs=142.4
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeec---
Q 013184 201 DNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSF--- 277 (448)
Q Consensus 201 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--- 277 (448)
+.+++++..++.|..|+..+.... ... ....+.++.+ +++|. +++ ++.+ .|.+||..+++.......
T Consensus 61 ~~l~~~d~~~~~i~~~d~~~~~~~---~~~--~~~~v~~i~~--~~dg~-l~v-~~~~-gl~~~d~~~g~~~~~~~~~~~ 130 (326)
T 2ghs_A 61 GTAWWFNILERELHELHLASGRKT---VHA--LPFMGSALAK--ISDSK-QLI-ASDD-GLFLRDTATGVLTLHAELESD 130 (326)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEE---EEE--CSSCEEEEEE--EETTE-EEE-EETT-EEEEEETTTCCEEEEECSSTT
T ss_pred CEEEEEECCCCEEEEEECCCCcEE---EEE--CCCcceEEEE--eCCCe-EEE-EECC-CEEEEECCCCcEEEEeeCCCC
Confidence 456777778899999998765422 111 1233445544 67775 444 4444 499999988876544332
Q ss_pred --CCCeeEEEECCCCCEEEEEec------CCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEE
Q 013184 278 --PWPVNHTSLSPDGKLLVIVGD------NPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATG-NQDKTCRVWD 348 (448)
Q Consensus 278 --~~~v~~~~~sp~~~~l~~~~~------d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~-~~d~~i~iwd 348 (448)
...++.++++|+|+++++... .+.|..++ +++.. .+..+......++|+|+|+.++.+ +.++.|.+|+
T Consensus 131 ~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d 207 (326)
T 2ghs_A 131 LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVP 207 (326)
T ss_dssp CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEE
Confidence 135789999999997665442 24566666 45443 333334457789999999876555 4568899999
Q ss_pred cc-CCC-c-----ceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEc-cCCCeE
Q 013184 349 VR-NLS-K-----SVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFS-PDTEAL 420 (448)
Q Consensus 349 ~~-~~~-~-----~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fs-pdg~~L 420 (448)
+. ..+ . .+..+......+..++++++|.+.++...++.|.+|+. +++.+..+......+++++|+ |+++.|
T Consensus 208 ~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L 286 (326)
T 2ghs_A 208 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRL 286 (326)
T ss_dssp BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEE
T ss_pred cccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEE
Confidence 85 113 2 12223333456788999999988777767788999997 566666666555679999998 999988
Q ss_pred EEEEecC
Q 013184 421 FIGVWDR 427 (448)
Q Consensus 421 ~~~~~D~ 427 (448)
++++...
T Consensus 287 ~vt~~~~ 293 (326)
T 2ghs_A 287 LVTSARE 293 (326)
T ss_dssp EEEEBCT
T ss_pred EEEecCC
Confidence 8876654
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.38 E-value=1.5e-09 Score=100.41 Aligned_cols=220 Identities=10% Similarity=0.002 Sum_probs=149.5
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
.+.+|++ +++++++...++.|.+++.. .... .... ......+..+.+ .+++. ++++...++.|..+|.. ++
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~-~~~~~~~~~i~~--~~~g~-l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFEV-PTPDAKVMCLIV--SSLGD-IWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEEC-SSTTCCEEEEEE--CTTSC-EEEEETTTTEEEEECTT-SC
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEEC-CCCCCcceeEEE--CCCCC-EEEEecCCCeEEEECCC-CC
Confidence 3567777 67777777778999999977 3322 1122 122233444444 77775 55555557889999988 55
Q ss_pred EEEEe-e-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeE-eeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 013184 271 LSKHF-S-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIM-PLCGHLDFSFASAWHPDGRIFATGNQDKTCRVW 347 (448)
Q Consensus 271 ~~~~~-~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~-~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iw 347 (448)
..... . ....+.++++.++|+++++...++.|..++.. ++... .+......+..+++.|+|+++++....+.|..+
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI 172 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence 53222 1 34668999999999888777667899999987 65542 233345678999999999977766667889999
Q ss_pred EccCCCcceE-EEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee-eecCcCceEEEEEccCCCeEEEE
Q 013184 348 DVRNLSKSVA-VLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ-EIDFFGEISGMTFSPDTEALFIG 423 (448)
Q Consensus 348 d~~~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~fspdg~~L~~~ 423 (448)
+. . +.... ....+...+..++++++|++.++....+.|.+|+. ++..... .......+.+++++++|+..++.
T Consensus 173 ~~-~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 173 TN-T-GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp CT-T-CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred CC-C-CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence 98 3 33332 22234456889999999987777666778999997 5544332 22345678999999999844443
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.37 E-value=5.5e-10 Score=117.83 Aligned_cols=234 Identities=13% Similarity=0.064 Sum_probs=149.1
Q ss_pred eeEEEEe--cCCEEEEEeCC-----CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC------
Q 013184 193 QVSTLAV--RDNLLIAGGFQ-----GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC------ 259 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg------ 259 (448)
.+.++++ +|++|+.++.+ .+|++|++.++..... .... .....+ .++|+ . .|+.++.++
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~---~~~~~~--~wspD-~-~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKW---VKFSGL--AWLGN-D-ALLYSRFAEPKEGQA 235 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEE---EESCCC--EESTT-S-EEEEEECCCC-----
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCC---ceeccE--EEECC-C-EEEEEEecCcccccc
Confidence 4556666 88988877654 4699999988764321 1110 001233 44888 6 455555544
Q ss_pred --------cEEEEecCCceE--EEEee---cCCCeeEEEECCCCCEEEEEecCC-----cEEEEECCCC--ceeEeeecC
Q 013184 260 --------GVRDFDMERFQL--SKHFS---FPWPVNHTSLSPDGKLLVIVGDNP-----EGILVDSQTG--KAIMPLCGH 319 (448)
Q Consensus 260 --------~v~iwd~~~~~~--~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~-----~i~i~d~~~~--~~~~~l~~h 319 (448)
.|++|++.+++. ...+. ++..+..+.|+|+|++|+..+.++ .|++||+.++ +....+..+
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 315 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD 315 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC
Confidence 388999877652 22233 233588999999999998887543 8999999877 414556556
Q ss_pred CCcEEEEEEcCCCCEEEEEeCC----CcEEEEEccCC-CcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-
Q 013184 320 LDFSFASAWHPDGRIFATGNQD----KTCRVWDVRNL-SKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAK- 393 (448)
Q Consensus 320 ~~~v~~~~~~p~g~~l~s~~~d----~~i~iwd~~~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~- 393 (448)
...+.... +|+|..|+..+.+ +.|.+||+... ......+..+...+..+.|+ ++.++++...++..+||.+.
T Consensus 316 ~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~ 393 (741)
T 1yr2_A 316 LKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDL 393 (741)
T ss_dssp SSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEET
T ss_pred CCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC
Confidence 55555554 4889988877654 45999998652 12333444455567778887 56777888888876666543
Q ss_pred CCceeeeeec-CcCceEEEEEccCCCeEEEEEe-cCCcceEEEEe
Q 013184 394 NGFEKEQEID-FFGEISGMTFSPDTEALFIGVW-DRTYGSLLQYN 436 (448)
Q Consensus 394 ~~~~~~~~~~-~~~~v~~~~fspdg~~L~~~~~-D~~~~~ll~~~ 436 (448)
++.....+.. ..+.+.+++++|+++.|+.... ..+-+.+..++
T Consensus 394 ~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 438 (741)
T 1yr2_A 394 DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALD 438 (741)
T ss_dssp TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEE
T ss_pred CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 3554544443 3577899999999987765533 33334455554
No 208
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.37 E-value=1.9e-11 Score=117.47 Aligned_cols=172 Identities=15% Similarity=0.108 Sum_probs=123.3
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCc-------eeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEE
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGV-------SFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRD 263 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~i 263 (448)
+++.|++ ..+++++|+.+|. ++|++..... .+.......... +..+.+ ++. .|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~~l-~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f----d~~-~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKA-VVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF----HGD-QVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEE-EEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE----ETT-EEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEE-EEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE----CCC-EEEEE-cCCcEEE
Confidence 3555555 7889999999865 5598653220 011101112333 566655 555 67777 7899999
Q ss_pred EecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCC
Q 013184 264 FDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDK 342 (448)
Q Consensus 264 wd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~ 342 (448)
||+.+........ +..++.++.+.+. .++++..||.+.+||+.+++... +...|.+++|+|+| ++.|..||
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg 182 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDR 182 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTS
T ss_pred EEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCC
Confidence 9997755444343 6777888877754 38889999999999999887654 34579999999999 78899999
Q ss_pred cEEEEEccCCCcc--eEEE------c---cCCCCeEEEEEcCCCCEEEEE
Q 013184 343 TCRVWDVRNLSKS--VAVL------K---GNLGAIRSIRFTSDGNFMAMA 381 (448)
Q Consensus 343 ~i~iwd~~~~~~~--~~~~------~---~~~~~v~~l~~sp~g~~l~s~ 381 (448)
++++|+... ... ..++ . +|...|.+++|.+++.+|++=
T Consensus 183 ~i~~~~~~~-~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 183 SFQSFAWRN-GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp CEEEEEEET-TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred cEEEEcCCC-ccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 999998864 443 5556 2 367889999999999999873
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.34 E-value=3.1e-09 Score=99.04 Aligned_cols=220 Identities=14% Similarity=0.152 Sum_probs=142.9
Q ss_pred ceeeeCCCCeEEEec--CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCe
Q 013184 137 NLVWSTSKHDVYLMS--HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGE 212 (448)
Q Consensus 137 ~l~~~~~~~~v~~~~--~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~ 212 (448)
..+|.+..+.+|++. .+.|..|+..++... ..... ..+.++++ +++++++ . ++.
T Consensus 17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~-------------------~~~~~i~~~~dG~l~v~-~-~~~ 74 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMD-------------------APVSSVALRQSGGYVAT-I-GTK 74 (297)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEECS-------------------SCEEEEEEBTTSSEEEE-E-TTE
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCC-------------------CceEEEEECCCCCEEEE-E-CCe
Confidence 457888778888873 667999998765542 23222 13667777 6775444 4 567
Q ss_pred EEEEEcCCCCceeEEEeecC-CCCceeeEEEEeCCCCCeeEEEE-eC----------CCcEEEEecCCceEEEEeecCCC
Q 013184 213 LICKYLDQPGVSFCSRTTYD-ENAITNAVEIYNSPSGGIHFMAS-NN----------DCGVRDFDMERFQLSKHFSFPWP 280 (448)
Q Consensus 213 i~vw~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~-s~----------dg~v~iwd~~~~~~~~~~~~~~~ 280 (448)
|.+|+..+............ .....+.+ ..+|+|. ++++. .. .+.|..++.. ++..........
T Consensus 75 l~~~d~~~g~~~~~~~~~~~~~~~~~~di--~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~ 150 (297)
T 3g4e_A 75 FCALNWKEQSAVVLATVDNDKKNNRFNDG--KVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDI 150 (297)
T ss_dssp EEEEETTTTEEEEEEECCTTCSSEEEEEE--EECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESB
T ss_pred EEEEECCCCcEEEEEecCCCCCCCCCCCE--EECCCCC-EEEecCCcccccccccCCCcEEEEEECC-CCEEEEeecccc
Confidence 88999876543322221111 11123344 4488887 44433 21 2345555543 444444444445
Q ss_pred eeEEEECCCCCEEEEE-ecCCcEEEEEC--CCCce-----eEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 013184 281 VNHTSLSPDGKLLVIV-GDNPEGILVDS--QTGKA-----IMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNL 352 (448)
Q Consensus 281 v~~~~~sp~~~~l~~~-~~d~~i~i~d~--~~~~~-----~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~ 352 (448)
.+.++|+|+++.++++ +..+.|.+|++ .++.. ...+..+......++++++|++.++....+.|.+||..+
T Consensus 151 pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t- 229 (297)
T 3g4e_A 151 SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT- 229 (297)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT-
T ss_pred ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC-
Confidence 6899999999977655 45778999986 45543 222333445678999999999888888888899999875
Q ss_pred CcceEEEccCCCCeEEEEEc-CCCCEEEEEeC
Q 013184 353 SKSVAVLKGNLGAIRSIRFT-SDGNFMAMAEP 383 (448)
Q Consensus 353 ~~~~~~~~~~~~~v~~l~~s-p~g~~l~s~~~ 383 (448)
++.+..+..+...+++++|. |+++.|.+++.
T Consensus 230 G~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 230 GKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred ceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 67778887777789999998 88887776654
No 210
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.32 E-value=1.8e-09 Score=103.27 Aligned_cols=263 Identities=13% Similarity=0.071 Sum_probs=167.8
Q ss_pred eeeCCCCeEEEec------CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEe----
Q 013184 139 VWSTSKHDVYLMS------HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGG---- 208 (448)
Q Consensus 139 ~~~~~~~~v~~~~------~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~---- 208 (448)
+..+..+.+|++. .+.|.+.|..+.+....+... ..| . ..++.++++|+++.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG--~~P---------------~-va~spDG~~lyVan~~~~ 100 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--FLP---------------N-PVVADDGSFIAHASTVFS 100 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC--SSC---------------E-EEECTTSSCEEEEEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC--CCC---------------c-EEECCCCCEEEEEccccc
Confidence 3456777888874 347999998887666555432 111 2 34555888777665
Q ss_pred ------CCCeEEEEEcCCCCceeEEEeecCC----CCceeeEEEEeCCCCCeeEEEEeC-CCcEEEEecCCceEEEEeec
Q 013184 209 ------FQGELICKYLDQPGVSFCSRTTYDE----NAITNAVEIYNSPSGGIHFMASNN-DCGVRDFDMERFQLSKHFSF 277 (448)
Q Consensus 209 ------~dg~i~vw~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~ 277 (448)
.++.|.+||..+........+.... ......+.+ +|+|+.++++... ++.|.++|+.+++.+..+..
T Consensus 101 r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~--spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v 178 (386)
T 3sjl_D 101 RIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV 178 (386)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred ccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEE--cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC
Confidence 3678999999887754333332101 112345555 9999854444433 68999999999999999875
Q ss_pred CCCeeEEEECCCCCEEEEEecCCcEEEEECCC-CceeEeeecC----CCcEE-EEEEc-CCCCEEEEEeCCCcEEEEEcc
Q 013184 278 PWPVNHTSLSPDGKLLVIVGDNPEGILVDSQT-GKAIMPLCGH----LDFSF-ASAWH-PDGRIFATGNQDKTCRVWDVR 350 (448)
Q Consensus 278 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~-~~~~~~l~~h----~~~v~-~~~~~-p~g~~l~s~~~d~~i~iwd~~ 350 (448)
++. ...+....+.+++.+.||.+.+.++.+ ++.......+ ..+++ ...|. ++|++++ .+.+|.|.+.|+.
T Consensus 179 ~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~ 255 (386)
T 3sjl_D 179 PDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLS 255 (386)
T ss_dssp CSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECT
T ss_pred CCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECC
Confidence 542 122322456677778888888888876 5543222111 12222 23554 6776555 5558999999986
Q ss_pred CCC-cceEEEc---------c-CCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCceeeeeecCcCceE
Q 013184 351 NLS-KSVAVLK---------G-NLGAIRSIRFTSDGNFMAMAEP----------ADFVHVYDAKNGFEKEQEIDFFGEIS 409 (448)
Q Consensus 351 ~~~-~~~~~~~---------~-~~~~v~~l~~sp~g~~l~s~~~----------d~~v~vwd~~~~~~~~~~~~~~~~v~ 409 (448)
... ..+..+. + ..+....++++|+++.|..+.. .+.|.++|+.+++.+..+.- ...+.
T Consensus 256 ~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~ 334 (386)
T 3sjl_D 256 SGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEID 334 (386)
T ss_dssp TSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEEC
T ss_pred CCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcc
Confidence 422 1222221 0 1123445788999988887643 35799999999988877653 34788
Q ss_pred EEEEccCCC-eEEEEEe
Q 013184 410 GMTFSPDTE-ALFIGVW 425 (448)
Q Consensus 410 ~~~fspdg~-~L~~~~~ 425 (448)
+|+|+||++ .|+++.+
T Consensus 335 ~lavs~D~~~~ly~tn~ 351 (386)
T 3sjl_D 335 SINVSQDEKPLLYALST 351 (386)
T ss_dssp EEEECSSSSCEEEEEET
T ss_pred eEEECCCCCeEEEEEcC
Confidence 999999997 7777654
No 211
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.31 E-value=8.4e-10 Score=103.28 Aligned_cols=211 Identities=14% Similarity=0.044 Sum_probs=140.6
Q ss_pred cCC-EEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee--
Q 013184 200 RDN-LLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-- 276 (448)
Q Consensus 200 ~~~-~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-- 276 (448)
+++ +++++..++.|..|+.. .... ... .....++.+.+ +++|. ++++...++.|.+|+.. ++......
T Consensus 55 ~g~~l~~~d~~~~~i~~~~~~-g~~~---~~~-~~~~~~~gl~~--d~dG~-l~v~~~~~~~v~~~~~~-g~~~~~~~~~ 125 (305)
T 3dr2_A 55 AQRTLVWSDLVGRRVLGWRED-GTVD---VLL-DATAFTNGNAV--DAQQR-LVHCEHGRRAITRSDAD-GQAHLLVGRY 125 (305)
T ss_dssp GGTEEEEEETTTTEEEEEETT-SCEE---EEE-ESCSCEEEEEE--CTTSC-EEEEETTTTEEEEECTT-SCEEEEECEE
T ss_pred CCCEEEEEECCCCEEEEEeCC-CCEE---EEe-CCCCccceeeE--CCCCC-EEEEECCCCEEEEECCC-CCEEEEEecc
Confidence 666 77888888999999873 3321 111 23344555555 88876 55544455789999986 55433322
Q ss_pred ---cCCCeeEEEECCCCCEEEE----Eec-------------CCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEE
Q 013184 277 ---FPWPVNHTSLSPDGKLLVI----VGD-------------NPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFA 336 (448)
Q Consensus 277 ---~~~~v~~~~~sp~~~~l~~----~~~-------------d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~ 336 (448)
....++.+++.|+|++.++ +.. .+.|..+|..+++..... .......++|+|+++.|+
T Consensus 126 ~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~ly 203 (305)
T 3dr2_A 126 AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLY 203 (305)
T ss_dssp TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEE
T ss_pred CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEE
Confidence 1235778999999998876 321 246788888777654433 445678899999999887
Q ss_pred EEeCC------CcEEEEEccCCCcce--EEE-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCc
Q 013184 337 TGNQD------KTCRVWDVRNLSKSV--AVL-KGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGE 407 (448)
Q Consensus 337 s~~~d------~~i~iwd~~~~~~~~--~~~-~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~ 407 (448)
.+... +.|.+|++.. .... ..+ ....+....++++++|++. ++..+ .|.+|+. .++.+..+.... .
T Consensus 204 v~~~~~~~~~~~~i~~~~~~~-~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-gv~~~~~-~g~~~~~~~~~~-~ 278 (305)
T 3dr2_A 204 VSQTPEQGHGSVEITAFAWRD-GALHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-GVCVFDS-DGQLLGHIPTPG-T 278 (305)
T ss_dssp EEECCC---CCCEEEEEEEET-TEEEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-EEEEECT-TSCEEEEEECSS-C
T ss_pred EEecCCcCCCCCEEEEEEecC-CCccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-cEEEECC-CCCEEEEEECCC-c
Confidence 77665 6899999864 2211 111 1123445678999999954 44444 5999997 566665555443 5
Q ss_pred eEEEEEccCCCeEEEEEec
Q 013184 408 ISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 408 v~~~~fspdg~~L~~~~~D 426 (448)
+.+++|+|+++.|++++.+
T Consensus 279 ~~~~~f~~d~~~L~it~~~ 297 (305)
T 3dr2_A 279 ASNCTFDQAQQRLFITGGP 297 (305)
T ss_dssp CCEEEECTTSCEEEEEETT
T ss_pred eeEEEEeCCCCEEEEEcCC
Confidence 8999999999999998864
No 212
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.31 E-value=7.2e-09 Score=99.85 Aligned_cols=252 Identities=10% Similarity=0.007 Sum_probs=161.9
Q ss_pred ceeeeCCCCeEEEec-----------CCeEEEEecCCCceeEEEecCCCCCC-CCCCCCCcccCCcceeeEEEEecCCEE
Q 013184 137 NLVWSTSKHDVYLMS-----------HFSIVHWSSLSSKRTEVLDVSGHVAP-CEKHPGNLLEGFTQTQVSTLAVRDNLL 204 (448)
Q Consensus 137 ~l~~~~~~~~v~~~~-----------~~~v~~w~~~~~~~~~~~~~~gh~~p-~~~~~~~~~~~~~~~~i~~l~~~~~~l 204 (448)
++..++++..+|++. ++.|.+||+.+.+....+.+.+...+ ....| .-..++.++++|
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p----------~~~~~spDG~~l 139 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS----------WMNANTPNNADL 139 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCc----------cceEECCCCCEE
Confidence 778889999999985 45699999877665555544311000 00001 113455589999
Q ss_pred EEEeC--CCeEEEEEcCCCCceeEEE-eecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-----
Q 013184 205 IAGGF--QGELICKYLDQPGVSFCSR-TTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS----- 276 (448)
Q Consensus 205 vsg~~--dg~i~vw~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----- 276 (448)
+++.. ++.|.++| .+.... .. +. .. .++.+ .|.+...+++.+.||.+.+++. +++......
T Consensus 140 ~v~n~~~~~~v~viD-~t~~~~--~~~i~--~~---~~~~~--~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~ 208 (373)
T 2mad_H 140 LFFQFAAGPAVGLVV-QGGSSD--DQLLS--SP---TCYHI--HPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML 208 (373)
T ss_pred EEEecCCCCeEEEEE-CCCCEE--eEEcC--CC---ceEEE--EeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc
Confidence 98874 57899999 766532 22 21 11 12222 4666667788888999999999 877663322
Q ss_pred -cCCCe-eEEEECCCCCEEEEEecCCcEEEEECCCCc--eeEeeec----------CCCcEEEEEEcCCCCEEEEEeC--
Q 013184 277 -FPWPV-NHTSLSPDGKLLVIVGDNPEGILVDSQTGK--AIMPLCG----------HLDFSFASAWHPDGRIFATGNQ-- 340 (448)
Q Consensus 277 -~~~~v-~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~--~~~~l~~----------h~~~v~~~~~~p~g~~l~s~~~-- 340 (448)
...++ ....+.+++..++..+..+.+.+.|+.++. .+..+.- .......++++|+++.++++..
T Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~ 288 (373)
T 2mad_H 209 TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ 288 (373)
T ss_pred cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccC
Confidence 11121 234566666666655677899999987653 2222211 1233445788999988777653
Q ss_pred --------CCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCC-EEEEEe-CCCeEEEEECCCCceeeeeecCcCceEE
Q 013184 341 --------DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGN-FMAMAE-PADFVHVYDAKNGFEKEQEIDFFGEISG 410 (448)
Q Consensus 341 --------d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~~ 410 (448)
.+.|.++|+.+ .+.+..+... .....+.|+|||+ .|+++. .++.|.|||+.+++.+..+.........
T Consensus 289 ~~~~~~~~~~~V~VID~~t-~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~P~~ 366 (373)
T 2mad_H 289 SAWKLHAAAKEVTSVTGLV-GQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQV 366 (373)
T ss_pred CcccccCCCCeEEEEECCC-CEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCCCCCcE
Confidence 35799999976 6777777533 3578999999999 777776 4899999999999888764433333333
Q ss_pred E
Q 013184 411 M 411 (448)
Q Consensus 411 ~ 411 (448)
+
T Consensus 367 ~ 367 (373)
T 2mad_H 367 L 367 (373)
T ss_pred E
Confidence 3
No 213
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.28 E-value=1.1e-09 Score=104.32 Aligned_cols=226 Identities=15% Similarity=0.048 Sum_probs=144.5
Q ss_pred eEEEEe--cCCEEEEEe--CCCeEEEEEcCCCCceeEEEee------cCCCCceeeEEEEeCCCCCeeEEEEeC-----C
Q 013184 194 VSTLAV--RDNLLIAGG--FQGELICKYLDQPGVSFCSRTT------YDENAITNAVEIYNSPSGGIHFMASNN-----D 258 (448)
Q Consensus 194 i~~l~~--~~~~lvsg~--~dg~i~vw~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~s~s~-----d 258 (448)
...+++ +++++++.. .+|.+++|.+. .+.. .... ..+-..+..+. +++++. ++++-.. +
T Consensus 19 p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~~--~~~p~~~~~~~~~~~~p~gv~--~d~~g~-L~v~D~g~~~~~~ 92 (343)
T 2qe8_A 19 PGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDGL--IPFPPQSGNAIITFDTVLGIK--SDGNGI-VWMLDNGNQSKSV 92 (343)
T ss_dssp EEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTEE--EESCCCCSSCCCCCSCEEEEE--ECSSSE-EEEEECHHHHTSC
T ss_pred cceEEECCCCCEEEEeCCCCCCceEEEEEC-CCCe--ecCCCcccCcccceeEeeEEE--EcCCCc-EEEEcCCCCcCCC
Confidence 466666 678888854 23435667665 2221 1111 01122334444 488875 4443322 5
Q ss_pred CcEEEEecCCceEEEEeecC-------CCeeEEEECCCCCEEEEE-e---cCCcEEEEECCCCceeEeeecCC-------
Q 013184 259 CGVRDFDMERFQLSKHFSFP-------WPVNHTSLSPDGKLLVIV-G---DNPEGILVDSQTGKAIMPLCGHL------- 320 (448)
Q Consensus 259 g~v~iwd~~~~~~~~~~~~~-------~~v~~~~~sp~~~~l~~~-~---~d~~i~i~d~~~~~~~~~l~~h~------- 320 (448)
..|.+||+.+++++..+..+ ..++.++++|++..++++ . .++.|.+||+.+++....+.+|.
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~ 172 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI 172 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence 78999999999987777632 346899999865555444 4 57899999999887766554321
Q ss_pred ----------------------CcEEEEEEcCCCCEEEEEeCCCcEEEEEccC----CCc-----ce--EEEccCCCCeE
Q 013184 321 ----------------------DFSFASAWHPDGRIFATGNQDKTCRVWDVRN----LSK-----SV--AVLKGNLGAIR 367 (448)
Q Consensus 321 ----------------------~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~----~~~-----~~--~~~~~~~~~v~ 367 (448)
..+..++|+|+|+.|+.+...+. ++|.+.. ... .. ....++.+...
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pd 251 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICD 251 (343)
T ss_dssp CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCS
T ss_pred ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCc
Confidence 23688999999998888877663 4554421 000 00 01223344566
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeec-CcCceEEEEEccCCCeEEEEEec
Q 013184 368 SIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEID-FFGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 368 ~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~fspdg~~L~~~~~D 426 (448)
.++++++|.++++...++.|.+||..+++....... ....+.+++|.++|+.+++.+..
T Consensus 252 gia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 252 GISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp CEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred eEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 799999999999888889999999756653322222 24568999999998877766543
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.28 E-value=1.6e-08 Score=95.60 Aligned_cols=219 Identities=15% Similarity=0.128 Sum_probs=139.7
Q ss_pred ceeeeCCCCeEEEec--CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCe
Q 013184 137 NLVWSTSKHDVYLMS--HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGE 212 (448)
Q Consensus 137 ~l~~~~~~~~v~~~~--~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~ 212 (448)
...|.+....+|++. ++.|..|+..++.... .... ..+.++++ +++++++ +.+ .
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~~-------------------~~v~~i~~~~dg~l~v~-~~~-g 110 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLASGRKTV-HALP-------------------FMGSALAKISDSKQLIA-SDD-G 110 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EECS-------------------SCEEEEEEEETTEEEEE-ETT-E
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EECC-------------------CcceEEEEeCCCeEEEE-ECC-C
Confidence 456777777777763 5679999987654332 2221 13666666 6666655 444 4
Q ss_pred EEEEEcCCCCceeEEEeecCC-CCceeeEEEEeCCCCCeeEEEEeC------CCcEEEEecCCceEEEEeecCCCeeEEE
Q 013184 213 LICKYLDQPGVSFCSRTTYDE-NAITNAVEIYNSPSGGIHFMASNN------DCGVRDFDMERFQLSKHFSFPWPVNHTS 285 (448)
Q Consensus 213 i~vw~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~~v~~~~ 285 (448)
|.+|+..+............. ...++.+ ..+|+|. ++++... .+.|..++ +++...........+.++
T Consensus 111 l~~~d~~~g~~~~~~~~~~~~~~~~~~~i--~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~ 185 (326)
T 2ghs_A 111 LFLRDTATGVLTLHAELESDLPGNRSNDG--RMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSIC 185 (326)
T ss_dssp EEEEETTTCCEEEEECSSTTCTTEEEEEE--EECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEE
T ss_pred EEEEECCCCcEEEEeeCCCCCCCCCCCCE--EECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeE
Confidence 888988766532211111111 1123344 4488887 4443332 24566666 566544434444578999
Q ss_pred ECCCCCEEEEEe-cCCcEEEEECC--CC-ce-----eEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcce
Q 013184 286 LSPDGKLLVIVG-DNPEGILVDSQ--TG-KA-----IMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSV 356 (448)
Q Consensus 286 ~sp~~~~l~~~~-~d~~i~i~d~~--~~-~~-----~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~ 356 (448)
|+|+++.++++. .++.|.+|+.. ++ +. ...+......+..++++++|+++++...++.|.+|+. . ++.+
T Consensus 186 ~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~-g~~~ 263 (326)
T 2ghs_A 186 FSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-D-GNHI 263 (326)
T ss_dssp ECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-T-CCEE
T ss_pred EcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-C-CCEE
Confidence 999999776654 56789999975 55 32 2223334456788999999998777767788999998 3 5666
Q ss_pred EEEccCCCCeEEEEEc-CCCCEEEEEeCC
Q 013184 357 AVLKGNLGAIRSIRFT-SDGNFMAMAEPA 384 (448)
Q Consensus 357 ~~~~~~~~~v~~l~~s-p~g~~l~s~~~d 384 (448)
..+..+...+.+++|+ |+++.|++++..
T Consensus 264 ~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 264 ARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 7777666779999998 898877666544
No 215
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.27 E-value=1.2e-09 Score=106.26 Aligned_cols=260 Identities=11% Similarity=0.011 Sum_probs=166.0
Q ss_pred CCCCeEEEecC------CeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEe-------
Q 013184 142 TSKHDVYLMSH------FSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGG------- 208 (448)
Q Consensus 142 ~~~~~v~~~~~------~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~------- 208 (448)
+..+.+|++.. +.|.+.|+.+.+....+.... . +=..++.++++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~--~----------------Pgia~SpDgk~lyVan~~~~~~~ 143 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF--L----------------PHPVAAEDGSFFAQASTVFERIA 143 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS--S----------------CEEEECTTSSCEEEEEEEEEETT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC--C----------------CceEECCCCCEEEEEeccccccc
Confidence 34456777643 579999998877766665431 1 1134455888777775
Q ss_pred ---CCCeEEEEEcCCCCceeEEEeecCC----CCceeeEEEEeCCCCCeeEEEEeC-CCcEEEEecCCceEEEEeecCCC
Q 013184 209 ---FQGELICKYLDQPGVSFCSRTTYDE----NAITNAVEIYNSPSGGIHFMASNN-DCGVRDFDMERFQLSKHFSFPWP 280 (448)
Q Consensus 209 ---~dg~i~vw~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~ 280 (448)
.++.|.++|..+........+.... ......+.+ +|+|+.++++... ++.|.++|+.+++.+..+.....
T Consensus 144 ~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~--spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~ 221 (426)
T 3c75_H 144 RGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNAL--TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC 221 (426)
T ss_dssp EEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE
T ss_pred cCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEE--cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc
Confidence 4678999999887754333332000 112234444 8999844444333 68899999999999988885442
Q ss_pred eeEEEECCCC-CEEEEEecCCcEEEEECCCCceeEe----eecCCCcE-EEEEEcCCCCEEEEEeCCCcEEEEEccCCCc
Q 013184 281 VNHTSLSPDG-KLLVIVGDNPEGILVDSQTGKAIMP----LCGHLDFS-FASAWHPDGRIFATGNQDKTCRVWDVRNLSK 354 (448)
Q Consensus 281 v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~----l~~h~~~v-~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~ 354 (448)
....|++ ..+++.+.||.+.+.+..+++.... +.....++ ..+.+.+++..++..+..+.|.+.|......
T Consensus 222 ---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~ 298 (426)
T 3c75_H 222 ---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA 298 (426)
T ss_dssp ---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE
T ss_pred ---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce
Confidence 3334433 5566677788888778765554422 21111221 1356799988887778889999999864211
Q ss_pred c-eEEEcc----------CCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCceeeeeecCcCceEEEEE
Q 013184 355 S-VAVLKG----------NLGAIRSIRFTSDGNFMAMAEP----------ADFVHVYDAKNGFEKEQEIDFFGEISGMTF 413 (448)
Q Consensus 355 ~-~~~~~~----------~~~~v~~l~~sp~g~~l~s~~~----------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~f 413 (448)
. +..+.. .......++++|+|+.|.++.. .+.|.++|+.+.+.+..+.. .....+++|
T Consensus 299 ~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~ 377 (426)
T 3c75_H 299 TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINV 377 (426)
T ss_dssp EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEE
T ss_pred EEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEE
Confidence 1 111110 0112233689999987777642 35799999999988877653 345899999
Q ss_pred ccCCC-eEEEEEe
Q 013184 414 SPDTE-ALFIGVW 425 (448)
Q Consensus 414 spdg~-~L~~~~~ 425 (448)
+|||+ .|+++.+
T Consensus 378 spDg~~~lyv~n~ 390 (426)
T 3c75_H 378 SQDAEPLLYALSA 390 (426)
T ss_dssp CCSSSCEEEEEET
T ss_pred ccCCCEEEEEEcC
Confidence 99999 8888875
No 216
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.23 E-value=2.4e-09 Score=102.44 Aligned_cols=257 Identities=13% Similarity=0.066 Sum_probs=167.1
Q ss_pred ceeeeCCCCeEEEec-----------CCeEEEEecCCCceeEEEecCC-CCCCCCCCCCCcccCCcceeeEEEEecCCEE
Q 013184 137 NLVWSTSKHDVYLMS-----------HFSIVHWSSLSSKRTEVLDVSG-HVAPCEKHPGNLLEGFTQTQVSTLAVRDNLL 204 (448)
Q Consensus 137 ~l~~~~~~~~v~~~~-----------~~~v~~w~~~~~~~~~~~~~~g-h~~p~~~~~~~~~~~~~~~~i~~l~~~~~~l 204 (448)
++..++++..+|+++ .+.|.+||+.+.+....+.+.+ .......+| .-..++.+|++|
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P----------~~~a~spDGk~l 151 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYP----------WMTSLTPDGKTL 151 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCG----------GGEEECTTSSEE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCC----------ceEEEcCCCCEE
Confidence 567788888899875 3569999998887766665532 110001111 123455589988
Q ss_pred EEEeC--CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC-ceEEEEee-c---
Q 013184 205 IAGGF--QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER-FQLSKHFS-F--- 277 (448)
Q Consensus 205 vsg~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~-~--- 277 (448)
+++.. ++.|.++|+.+.+......+. + +..+ .|.+...+++.+.||++.+.++.+ ++...... +
T Consensus 152 yVan~~~~~~VsVID~~t~~vv~tI~v~----g---~~~~--~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~ 222 (386)
T 3sjl_D 152 LFYQFSPAPAVGVVDLEGKAFKRMLDVP----D---CYHI--FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP 222 (386)
T ss_dssp EEEECSSSCEEEEEETTTTEEEEEEECC----S---EEEE--EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEECC----C---ccee--ecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecc
Confidence 88864 689999999887654322221 1 1122 355555777888899999999876 56432221 1
Q ss_pred -CCCee-EEEE-CCCCCEEEEEecCCcEEEEECCCCc--eeEeee---------c-CCCcEEEEEEcCCCCEEEEEeC--
Q 013184 278 -PWPVN-HTSL-SPDGKLLVIVGDNPEGILVDSQTGK--AIMPLC---------G-HLDFSFASAWHPDGRIFATGNQ-- 340 (448)
Q Consensus 278 -~~~v~-~~~~-sp~~~~l~~~~~d~~i~i~d~~~~~--~~~~l~---------~-h~~~v~~~~~~p~g~~l~s~~~-- 340 (448)
..++. ...| .++|++++ .+.++.|.+.|..++. .+..+. + .......++++|+++.++....
T Consensus 223 ~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~ 301 (386)
T 3sjl_D 223 EDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR 301 (386)
T ss_dssp TTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred ccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccc
Confidence 12221 2455 35775544 6668999999987664 232222 0 1122234777999987777643
Q ss_pred --------CCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCC-EEEEEe-CCCeEEEEECCCCceeeeeecCcCceEE
Q 013184 341 --------DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGN-FMAMAE-PADFVHVYDAKNGFEKEQEIDFFGEISG 410 (448)
Q Consensus 341 --------d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~~ 410 (448)
.+.|-+.|+.+ .+.+..+... ..+.+|.++|||+ +|+++. .++.|.|+|..+++.+..+.. .+....
T Consensus 302 ~~~~hk~~~~~V~viD~~t-~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~-~~~p~~ 378 (386)
T 3sjl_D 302 DEWRHKTASRFVVVLDAKT-GERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ-LGHGPQ 378 (386)
T ss_dssp CTTCTTSCEEEEEEEETTT-CCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC-CCSSCC
T ss_pred cccccCCCCCEEEEEECCC-CeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC-CCCCce
Confidence 24689999977 6777766533 3678999999997 666654 488999999999988776653 456677
Q ss_pred EEEccC
Q 013184 411 MTFSPD 416 (448)
Q Consensus 411 ~~fspd 416 (448)
|.+++|
T Consensus 379 l~~s~d 384 (386)
T 3sjl_D 379 VITTAD 384 (386)
T ss_dssp EEEECC
T ss_pred eEECCc
Confidence 888877
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.21 E-value=2.3e-08 Score=97.56 Aligned_cols=229 Identities=10% Similarity=0.067 Sum_probs=146.6
Q ss_pred eeeCCCCeEEEec--CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCC--eEE
Q 013184 139 VWSTSKHDVYLMS--HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQG--ELI 214 (448)
Q Consensus 139 ~~~~~~~~v~~~~--~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg--~i~ 214 (448)
++....+.+|++. ++.|++|+..++....+.... ..| . .++..+++.|+++..++ .|.
T Consensus 136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~--~~~---------------~-ia~~~~g~~l~~~d~~~~~~I~ 197 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF--KGG---------------K-PAVTKDKQRVYSIGWEGTHTVY 197 (409)
T ss_dssp EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC--CBC---------------B-CEECTTSSEEEEEBSSTTCEEE
T ss_pred EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC--CCC---------------c-eeEecCCCcEEEEecCCCceEE
Confidence 3344555688874 467999998776666555331 111 1 33444788888888766 788
Q ss_pred EEEcCCCCceeEE-EeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEE----ee-cCCC--eeEEEE
Q 013184 215 CKYLDQPGVSFCS-RTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKH----FS-FPWP--VNHTSL 286 (448)
Q Consensus 215 vw~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~----~~-~~~~--v~~~~~ 286 (448)
+++.......... .........+..+.+ +|.++.+++ +..++.|+.||..++..... .. .... .+.++|
T Consensus 198 ~~d~~~~~~~~~~g~~~~~~~~~p~~iav--~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~ 274 (409)
T 3hrp_A 198 VYMKASGWAPTRIGQLGSTFSGKIGAVAL--DETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIY 274 (409)
T ss_dssp EEEGGGTTCEEEEEECCTTSCSCCCBCEE--CTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEE
T ss_pred EEEcCCCceeEEeeeccchhcCCcEEEEE--eCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEE
Confidence 8877654432111 111212334456655 785553444 66788999999987664332 11 1111 239999
Q ss_pred CCC-CCEEEEEecCCcEEEEECCCCceeEeeecC---------------CCcEEEEEEcCCCCEEEEEe-CCCcEEEEEc
Q 013184 287 SPD-GKLLVIVGDNPEGILVDSQTGKAIMPLCGH---------------LDFSFASAWHPDGRIFATGN-QDKTCRVWDV 349 (448)
Q Consensus 287 sp~-~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h---------------~~~v~~~~~~p~g~~l~s~~-~d~~i~iwd~ 349 (448)
+|+ +.++++-...+.|+.|+.... +..+.++ ......++++|+|+++++-. .++.|+.|++
T Consensus 275 ~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~ 352 (409)
T 3hrp_A 275 YFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDI 352 (409)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEET
T ss_pred eCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEEC
Confidence 995 555555566788999986543 3333333 24578999999999777777 7889999997
Q ss_pred cCCCcceEEEccC---------------CCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 013184 350 RNLSKSVAVLKGN---------------LGAIRSIRFTSDGNFMAMAEPADFVHVYDA 392 (448)
Q Consensus 350 ~~~~~~~~~~~~~---------------~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~ 392 (448)
.. + .+..+.++ ......++++|+|.++++-..++.|+.+.+
T Consensus 353 ~~-G-~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 353 LD-G-YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TT-T-EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CC-C-EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 54 3 34444443 245789999999888777777888888765
No 218
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.19 E-value=7.7e-09 Score=99.80 Aligned_cols=222 Identities=11% Similarity=0.067 Sum_probs=143.9
Q ss_pred cCCE-EEEEeCCCeEEEEEcCCC-C-ceeEEEee----cCCCCceeeEEEEeCCCCCeeEEEEeCC------CcEEEEec
Q 013184 200 RDNL-LIAGGFQGELICKYLDQP-G-VSFCSRTT----YDENAITNAVEIYNSPSGGIHFMASNND------CGVRDFDM 266 (448)
Q Consensus 200 ~~~~-lvsg~~dg~i~vw~~~~~-~-~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~s~s~d------g~v~iwd~ 266 (448)
+.++ ++.|..++.|.+.|+.+. . ......+. ....+....-.+...|+| +++++..+ +.|.++|.
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECT
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEEC
Confidence 3554 455678899999998644 2 22222221 000011122223337888 55565544 78999999
Q ss_pred CCceEEEEeecC-C---CeeEEEECCCCCEEEEEe-------------------cCCcEEEEECCCCceeEeeecCC--C
Q 013184 267 ERFQLSKHFSFP-W---PVNHTSLSPDGKLLVIVG-------------------DNPEGILVDSQTGKAIMPLCGHL--D 321 (448)
Q Consensus 267 ~~~~~~~~~~~~-~---~v~~~~~sp~~~~l~~~~-------------------~d~~i~i~d~~~~~~~~~l~~h~--~ 321 (448)
++++++...... . .-..+.|+|+++.+++.. ....|.+||+.+++.++++.... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 999999988722 2 233577899999888774 36799999999998888876421 2
Q ss_pred cEEEEEE--cCCCCEEEEEeC------CCcEEEEEccCCCc--ceEEE--ccC----------------CCCeEEEEEcC
Q 013184 322 FSFASAW--HPDGRIFATGNQ------DKTCRVWDVRNLSK--SVAVL--KGN----------------LGAIRSIRFTS 373 (448)
Q Consensus 322 ~v~~~~~--~p~g~~l~s~~~------d~~i~iwd~~~~~~--~~~~~--~~~----------------~~~v~~l~~sp 373 (448)
....+.| +|+++++++++. +++|.+|.... +. ..+.+ ... ......+.+||
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~ 330 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL 330 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence 3445555 999998887774 56787766543 21 11111 110 13467899999
Q ss_pred CCCEEEEEeC-CCeEEEEECCCC---ceeeeeecC--------------cCceEEEEEccCCCeEEEEE
Q 013184 374 DGNFMAMAEP-ADFVHVYDAKNG---FEKEQEIDF--------------FGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 374 ~g~~l~s~~~-d~~v~vwd~~~~---~~~~~~~~~--------------~~~v~~~~fspdg~~L~~~~ 424 (448)
||++|.++.. .+.|.+||+... +.+.++... .+....++++|||++|+++.
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999998875 579999998632 333333221 01368999999999999997
No 219
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.19 E-value=1.5e-11 Score=118.57 Aligned_cols=204 Identities=12% Similarity=0.102 Sum_probs=112.1
Q ss_pred EecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeec
Q 013184 198 AVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSF 277 (448)
Q Consensus 198 ~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 277 (448)
++.+..+++++.||.|.+||..+++....... ..+. +..+ ..++. .+++++.|+.|+.||.++++.+.....
T Consensus 6 ~v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----~~~~-s~p~--~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~ 77 (369)
T 2hz6_A 6 TLPETLLFVSTLDGSLHAVSKRTGSIKWTLKE----DPVL-QVPT--HVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPF 77 (369)
T ss_dssp --CTTEEEEEETTSEEEEEETTTCCEEEEEEC----CCSC-CCC-------C-CEEECTTTCCEEEC-----CCSEECSC
T ss_pred eeeCCEEEEEcCCCEEEEEECCCCCEEEEecC----CCce-ecce--EcCCC-EEEEeCCCCEEEEEECCCCceeeeeec
Confidence 44789999999999999999988876543332 2222 2111 23443 677778999999999998887665542
Q ss_pred C--CCee-EEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCc
Q 013184 278 P--WPVN-HTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSK 354 (448)
Q Consensus 278 ~--~~v~-~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~ 354 (448)
. ..+. +..+. .+..+++++.++.++.||..+|+.+..+..+. ...++|++..+++++.++.|+.||.++ ++
T Consensus 78 ~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~t-G~ 151 (369)
T 2hz6_A 78 TIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKT-RE 151 (369)
T ss_dssp CHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSS-SS
T ss_pred cCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCC-CC
Confidence 2 1111 11111 35577888889999999999999988776543 234567888999999999999999987 55
Q ss_pred ceEEEccCCCCeEEEEEcCCC---CEEEEEeCCCeEEEEECCCCceeeeeecCcCceE-EEEEccCCC
Q 013184 355 SVAVLKGNLGAIRSIRFTSDG---NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEIS-GMTFSPDTE 418 (448)
Q Consensus 355 ~~~~~~~~~~~v~~l~~sp~g---~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~-~~~fspdg~ 418 (448)
.+..+..+. .....+++++ ..+++++.+|.|+.||..+|+.+.+.. ..+++. ...++++|.
T Consensus 152 ~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 152 LRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVAFYVWQREGL 216 (369)
T ss_dssp CCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEEEEECTTSSC
T ss_pred EEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEEEEEecCCce
Confidence 544433211 1223344432 456778899999999999998876655 334443 345566664
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.18 E-value=7.4e-09 Score=96.80 Aligned_cols=224 Identities=10% Similarity=0.068 Sum_probs=139.3
Q ss_pred ceeeeCCCCeEEEec--CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCe
Q 013184 137 NLVWSTSKHDVYLMS--HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGE 212 (448)
Q Consensus 137 ~l~~~~~~~~v~~~~--~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~ 212 (448)
..+|.+..+.++++. ++.|..|+. ++......... ..+..+++ +++++++...++.
T Consensus 49 gp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~-------------------~~~~gl~~d~dG~l~v~~~~~~~ 108 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDAT-------------------AFTNGNAVDAQQRLVHCEHGRRA 108 (305)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESC-------------------SCEEEEEECTTSCEEEEETTTTE
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCC-------------------CccceeeECCCCCEEEEECCCCE
Confidence 457877777677663 567999986 44433332211 12566666 6776666556688
Q ss_pred EEEEEcCCCCceeEEEeec-CCCCceeeEEEEeCCCCCeeEEE----EeC-------------CCcEEEEecCCceEEEE
Q 013184 213 LICKYLDQPGVSFCSRTTY-DENAITNAVEIYNSPSGGIHFMA----SNN-------------DCGVRDFDMERFQLSKH 274 (448)
Q Consensus 213 i~vw~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s----~s~-------------dg~v~iwd~~~~~~~~~ 274 (448)
|.+|+.+ ........... .....++.+.+ .++|. ++++ |.. .+.|..++..+++....
T Consensus 109 v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~--d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~ 184 (305)
T 3dr2_A 109 ITRSDAD-GQAHLLVGRYAGKRLNSPNDLIV--ARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM 184 (305)
T ss_dssp EEEECTT-SCEEEEECEETTEECSCCCCEEE--CTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred EEEECCC-CCEEEEEeccCCCccCCCCCEEE--CCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence 9999875 33221111111 11112344544 78886 5554 322 35688888877665444
Q ss_pred eecCCCeeEEEECCCCCEEEEEecC------CcEEEEECCCCcee--Eee-ecCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 013184 275 FSFPWPVNHTSLSPDGKLLVIVGDN------PEGILVDSQTGKAI--MPL-CGHLDFSFASAWHPDGRIFATGNQDKTCR 345 (448)
Q Consensus 275 ~~~~~~v~~~~~sp~~~~l~~~~~d------~~i~i~d~~~~~~~--~~l-~~h~~~v~~~~~~p~g~~l~s~~~d~~i~ 345 (448)
. .....+.++|+|+++.|+++... +.|.+|++..+... ..+ .........++++++|++.+ ++.++ |.
T Consensus 185 ~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~g-v~ 261 (305)
T 3dr2_A 185 A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGTG-VC 261 (305)
T ss_dssp E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSSE-EE
T ss_pred e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCCc-EE
Confidence 3 33457899999999988887665 68999998755411 111 11223345688999999544 44444 99
Q ss_pred EEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 013184 346 VWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYD 391 (448)
Q Consensus 346 iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd 391 (448)
+|+.. ++.+..+..+. .+.+++|+|+++.|.+++.++ +..++
T Consensus 262 ~~~~~--g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 262 VFDSD--GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp EECTT--SCEEEEEECSS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred EECCC--CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 99984 56666666554 588999999999998888765 44434
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.17 E-value=4.2e-09 Score=110.10 Aligned_cols=190 Identities=13% Similarity=0.037 Sum_probs=130.4
Q ss_pred EeCCCCCeeEEEEeCC----CcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCC-------------cEEEE
Q 013184 243 YNSPSGGIHFMASNND----CGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNP-------------EGILV 305 (448)
Q Consensus 243 ~~~~~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-------------~i~i~ 305 (448)
.++|+|+.++++.+.. ..|++||+++++.+...........++|+ |++.|+.++.+. .|++|
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~ 213 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFH 213 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEE
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEE
Confidence 3499998655554433 46999999999866542222123577899 999999988774 39999
Q ss_pred ECCCCce----eEeeec-CCCcEEEEEEcCCCCEEEEEeC----CCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCC
Q 013184 306 DSQTGKA----IMPLCG-HLDFSFASAWHPDGRIFATGNQ----DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGN 376 (448)
Q Consensus 306 d~~~~~~----~~~l~~-h~~~v~~~~~~p~g~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~ 376 (448)
++.++.. +..... |......+.|+|||++|+.... .+.|.++|+.........+..+....... |+++|.
T Consensus 214 ~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~ 292 (693)
T 3iuj_A 214 RLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGS 292 (693)
T ss_dssp ETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETT
T ss_pred ECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCC
Confidence 9987653 333333 4556788999999998765432 34799999976444566777777666655 677776
Q ss_pred EEEEEeC----CCeEEEEECCCCce--eeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEEEe
Q 013184 377 FMAMAEP----ADFVHVYDAKNGFE--KEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 377 ~l~s~~~----d~~v~vwd~~~~~~--~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~ 436 (448)
.|+..+. .+.|.++++.++.. ...+..+...+. .|+|+++.|+....+.....+..+.
T Consensus 293 ~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 293 TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence 6655543 25799999987654 245566666554 8999999999887766544554443
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.12 E-value=9.6e-09 Score=107.40 Aligned_cols=232 Identities=15% Similarity=0.116 Sum_probs=145.2
Q ss_pred eeEEEEe--cCCEEEEE-----eCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC------
Q 013184 193 QVSTLAV--RDNLLIAG-----GFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC------ 259 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg------ 259 (448)
.+..+++ ++++|+-+ +....|++|++.++..... .+... ....+.| + +++ .|+.++.+.
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~---k~~~~~W--s-Dg~-~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDV---KFSGISW--L-GNE-GFFYSSYDKPDGSEL 201 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEE---ESCCCEE--E-TTT-EEEEEESSCCC----
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCc---eeccEEE--e-CCC-EEEEEEecCcccccc
Confidence 3555555 88888743 3335799999988764221 11111 0123444 6 776 455555553
Q ss_pred -------cEEEEecCCceE--EEEeec----CCCeeEEEECCCCCEEEEEec----CCcEEEEECCCCc-eeEeeecCCC
Q 013184 260 -------GVRDFDMERFQL--SKHFSF----PWPVNHTSLSPDGKLLVIVGD----NPEGILVDSQTGK-AIMPLCGHLD 321 (448)
Q Consensus 260 -------~v~iwd~~~~~~--~~~~~~----~~~v~~~~~sp~~~~l~~~~~----d~~i~i~d~~~~~-~~~~l~~h~~ 321 (448)
.|++|++.+.+. ...+.. +..+..+.|+|+|++|+.... .+.|+++|+.++. ....+..+..
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~ 281 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD 281 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC
Confidence 499999876542 223332 334678999999998876543 2489999998764 3555666666
Q ss_pred cEEEEEEcCCCCEEE-EEeCC---CcEEEEEccCCCc-ceEEEccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECC
Q 013184 322 FSFASAWHPDGRIFA-TGNQD---KTCRVWDVRNLSK-SVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD---FVHVYDAK 393 (448)
Q Consensus 322 ~v~~~~~~p~g~~l~-s~~~d---~~i~iwd~~~~~~-~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~---~v~vwd~~ 393 (448)
..... |+++|..|+ +++.+ +.|.++++.+... ....+..+...+. .|+++|++|+....++ .|++|++.
T Consensus 282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 65555 666666554 44443 5788899876322 2355666666654 8999999888776544 78999987
Q ss_pred CCceeeee-ecCcCceEEEEEccCCCeEEEEEec-CCcceEEEEe
Q 013184 394 NGFEKEQE-IDFFGEISGMTFSPDTEALFIGVWD-RTYGSLLQYN 436 (448)
Q Consensus 394 ~~~~~~~~-~~~~~~v~~~~fspdg~~L~~~~~D-~~~~~ll~~~ 436 (448)
.+. ...+ ....+.+..++++|+++.|+....+ .+-+.+..++
T Consensus 359 g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 359 GKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp SCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred CCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 543 3333 2345678888899999888766544 2334444444
No 223
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.11 E-value=4.1e-08 Score=89.09 Aligned_cols=184 Identities=13% Similarity=0.095 Sum_probs=127.2
Q ss_pred ceeeEEEEeCCCCCeeEEEEeC--CCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEe-cCCcEEEEECCCCce
Q 013184 236 ITNAVEIYNSPSGGIHFMASNN--DCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVG-DNPEGILVDSQTGKA 312 (448)
Q Consensus 236 ~~~~v~~~~~~~~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~ 312 (448)
.+..+.+ ++++ .++++.+. ++.|+++|+.+++.+..+..+.......+.++++.|+++. .++.+.++|..+.+.
T Consensus 22 f~~Gl~~--~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 22 FTQGLVY--AEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CEEEEEE--CSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEE
T ss_pred CcccEEE--eCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcE
Confidence 3566666 6765 45555443 6799999999999999887443333333333455666555 678999999999999
Q ss_pred eEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCC-----CCeEEEEEcCCCCEEEEEeCCCeE
Q 013184 313 IMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNL-----GAIRSIRFTSDGNFMAMAEPADFV 387 (448)
Q Consensus 313 ~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~v~~l~~sp~g~~l~s~~~d~~v 387 (448)
+.++......- ..++++|+.++++..++.|.++|..+ .+.+..+.-.. ..++.+.|. +|+..+.....+.|
T Consensus 99 ~~~i~~g~~~g--~glt~Dg~~l~vs~gs~~l~viD~~t-~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V 174 (266)
T 2iwa_A 99 IKNFTHQMKDG--WGLATDGKILYGSDGTSILYEIDPHT-FKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCI 174 (266)
T ss_dssp EEEEECCSSSC--CEEEECSSSEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEECCCCCe--EEEEECCCEEEEECCCCeEEEEECCC-CcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeE
Confidence 98886331111 23455777777777788999999976 55555554221 236788888 77555555467899
Q ss_pred EEEECCCCceeeeeecCc-------------CceEEEEEccCCCeEEEEEec
Q 013184 388 HVYDAKNGFEKEQEIDFF-------------GEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 388 ~vwd~~~~~~~~~~~~~~-------------~~v~~~~fspdg~~L~~~~~D 426 (448)
.+.|..+++.+..+.-.. ....+|+|+|+++.|++++..
T Consensus 175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~ 226 (266)
T 2iwa_A 175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL 226 (266)
T ss_dssp EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence 999999998877665210 256899999999988888744
No 224
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.11 E-value=8.2e-09 Score=100.45 Aligned_cols=258 Identities=13% Similarity=0.059 Sum_probs=167.8
Q ss_pred ceeeeCCCCeEEEec-----------CCeEEEEecCCCceeEEEecCCCCCC-CCCCCCCcccCCcceeeEEEEecCCEE
Q 013184 137 NLVWSTSKHDVYLMS-----------HFSIVHWSSLSSKRTEVLDVSGHVAP-CEKHPGNLLEGFTQTQVSTLAVRDNLL 204 (448)
Q Consensus 137 ~l~~~~~~~~v~~~~-----------~~~v~~w~~~~~~~~~~~~~~gh~~p-~~~~~~~~~~~~~~~~i~~l~~~~~~l 204 (448)
.+..++.++.+|+++ ++.|.++|+.+.+....+.+.+.... ....| .-..++.++++|
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P----------~~~~~spDGk~l 191 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQ----------WMNALTPDNKNL 191 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCG----------GGSEECTTSSEE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCc----------ceEEEcCCCCEE
Confidence 677888888899885 45799999988777666655411000 00011 113455589999
Q ss_pred EEEeC--CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEE----ee-c
Q 013184 205 IAGGF--QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKH----FS-F 277 (448)
Q Consensus 205 vsg~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~----~~-~ 277 (448)
+++.. ++.|.+.|+.+.+......+ . + +..+ .|.+...+++.+.||.+.+.++.+++.... +. .
T Consensus 192 yV~n~~~~~~VsVID~~t~kvv~~I~v--~--g---~~~~--~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~ 262 (426)
T 3c75_H 192 LFYQFSPAPAVGVVDLEGKTFDRMLDV--P--D---CYHI--FPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTE 262 (426)
T ss_dssp EEEECSSSCEEEEEETTTTEEEEEEEC--C--S---EEEE--EEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCT
T ss_pred EEEecCCCCeEEEEECCCCeEEEEEEc--C--C---ceee--ccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccC
Confidence 88874 57899999988765422222 1 1 1122 355555777888899988888876665532 22 1
Q ss_pred CCCe-eEEEECCCCCEEEEEecCCcEEEEECCCCcee--Eeeec----------CCCcEEEEEEcCCCCEEEEEeC----
Q 013184 278 PWPV-NHTSLSPDGKLLVIVGDNPEGILVDSQTGKAI--MPLCG----------HLDFSFASAWHPDGRIFATGNQ---- 340 (448)
Q Consensus 278 ~~~v-~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~--~~l~~----------h~~~v~~~~~~p~g~~l~s~~~---- 340 (448)
..++ ..+.+.+++..++.....+.+.+.|...+... ..+.- .......++++|+++.+++...
T Consensus 263 ~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~ 342 (426)
T 3c75_H 263 DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDE 342 (426)
T ss_dssp TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCT
T ss_pred CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccc
Confidence 1221 24567999998888888899999998655421 11110 0111123689999887776643
Q ss_pred ------CCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCC-EEEEEe-CCCeEEEEECCCCceeeeeecCcCceEEEE
Q 013184 341 ------DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGN-FMAMAE-PADFVHVYDAKNGFEKEQEIDFFGEISGMT 412 (448)
Q Consensus 341 ------d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~ 412 (448)
.+.|.+.|..+ .+.+..+.... ....+.|+|+|+ +|+++. .++.|.|+|+.+++.+.++..-... ..+.
T Consensus 343 gthk~~s~~VsVID~~T-~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~-P~~i 419 (426)
T 3c75_H 343 WKHKAASRFVVVLNAET-GERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRG-PQII 419 (426)
T ss_dssp TCTTSCEEEEEEEETTT-CCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSS-CCEE
T ss_pred ccccCCCCEEEEEECCC-CeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCC-CcEE
Confidence 35799999987 67777775432 478899999999 888888 5899999999999988776322222 2255
Q ss_pred EccC
Q 013184 413 FSPD 416 (448)
Q Consensus 413 fspd 416 (448)
++||
T Consensus 420 ~~~~ 423 (426)
T 3c75_H 420 TTHD 423 (426)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 5554
No 225
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.10 E-value=2.7e-08 Score=89.28 Aligned_cols=189 Identities=12% Similarity=0.104 Sum_probs=133.9
Q ss_pred eecCCCCceeeEEEEeCCCCCeeEEEEeCCC--cEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEe-cCCcEEEE
Q 013184 229 TTYDENAITNAVEIYNSPSGGIHFMASNNDC--GVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVG-DNPEGILV 305 (448)
Q Consensus 229 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~ 305 (448)
........+..+.+ + ++ .++++++.+| .|+++|+++++.+..+..+.......+.+.++.|..+. .++.+.++
T Consensus 37 ~phd~~~ftqGL~~--~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 37 YPHDTKAFTEGFFY--R-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp EECCTTCEEEEEEE--E-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred ecCCCCcccceEEE--E-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 34445555677776 3 34 5777777765 89999999999999988666665544445566666655 57899999
Q ss_pred ECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccC--C---CCeEEEEEcCCCCEEEE
Q 013184 306 DSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGN--L---GAIRSIRFTSDGNFMAM 380 (448)
Q Consensus 306 d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~---~~v~~l~~sp~g~~l~s 380 (448)
|..+.+.+.++...... ..++ +++..|+.+..++.|.++|..+ .+.+..+... . ..++.+.|. +|+..+.
T Consensus 113 D~~t~~~~~ti~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan 187 (262)
T 3nol_A 113 NIRNLRQVRSFNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDPES-LTPVRTITVTAHGEELPELNELEWV-DGEIFAN 187 (262)
T ss_dssp ETTTCCEEEEEECSSCC-CCEE--ECSSCEEECCSSSEEEEECTTT-CSEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred ECccCcEEEEEECCCCc-eEEe--cCCCEEEEECCCCeEEEEcCCC-CeEEEEEEeccCCccccccceeEEE-CCEEEEE
Confidence 99999999988753322 3444 4677677666678899999976 5666555432 1 335567886 6765555
Q ss_pred EeCCCeEEEEECCCCceeeeeecC------------cCceEEEEEccCCCeEEEEEec
Q 013184 381 AEPADFVHVYDAKNGFEKEQEIDF------------FGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 381 ~~~d~~v~vwd~~~~~~~~~~~~~------------~~~v~~~~fspdg~~L~~~~~D 426 (448)
.-..+.|.+.|.++++.+..+... ..-.++|||+|+++.|++.+..
T Consensus 188 ~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 188 VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 446789999999999887665431 1346899999999999888743
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.10 E-value=2.9e-08 Score=103.23 Aligned_cols=263 Identities=13% Similarity=0.074 Sum_probs=166.1
Q ss_pred CCCeEEEec-CCeEEEEecCCCceeEEEecC-CCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeC------CCeEE
Q 013184 143 SKHDVYLMS-HFSIVHWSSLSSKRTEVLDVS-GHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGF------QGELI 214 (448)
Q Consensus 143 ~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~-gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~------dg~i~ 214 (448)
....||+.+ ++.|..+|..+++..-..... .... +. ... .+..+.+..+++++. +|.|.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~------~~---~~~----~~p~v~~~~v~v~~~~~~~~~~g~v~ 193 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKG------SL---TIT----GAPRVFKGKVIIGNGGAEYGVRGYIT 193 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCS------SC---BCC----SCCEEETTEEEECCBCTTTCCBCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCc------Cc---ccc----cCcEEECCEEEEEecccccCCCCEEE
Confidence 356677764 778999999887765555443 1100 00 000 111123455555553 79999
Q ss_pred EEEcCCCCceeEEEeecCCC-----------------------------CceeeEEEEeCCCCCeeEEEEeCCC------
Q 013184 215 CKYLDQPGVSFCSRTTYDEN-----------------------------AITNAVEIYNSPSGGIHFMASNNDC------ 259 (448)
Q Consensus 215 vw~~~~~~~~~~~~~~~~~~-----------------------------~~~~~v~~~~~~~~~~~l~s~s~dg------ 259 (448)
.+|..+.+............ .....+. .+|.++ +++.++.++
T Consensus 194 a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~--~d~~~~-~vy~~~~~~~~w~~~ 270 (677)
T 1kb0_A 194 AYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMT--FDAELN-TMYVGTGNGSPWSHK 270 (677)
T ss_dssp EEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEE--EETTTT-EEEEECCCEESSCHH
T ss_pred EEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCccccccee--EcCCCC-EEEEECCCCccccCC
Confidence 99998887554333321110 0001222 256666 555555443
Q ss_pred -------------cEEEEecCCceEEEEeecC----------CCeeEEEECCCC---CEEEEEecCCcEEEEECCCCcee
Q 013184 260 -------------GVRDFDMERFQLSKHFSFP----------WPVNHTSLSPDG---KLLVIVGDNPEGILVDSQTGKAI 313 (448)
Q Consensus 260 -------------~v~iwd~~~~~~~~~~~~~----------~~v~~~~~sp~~---~~l~~~~~d~~i~i~d~~~~~~~ 313 (448)
.|..+|..+++.+..++.. .....+....+| +.+++++.+|.++++|..+|+.+
T Consensus 271 ~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l 350 (677)
T 1kb0_A 271 VRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFI 350 (677)
T ss_dssp HHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred CCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEe
Confidence 5999999999999887721 122233333467 67888999999999999999988
Q ss_pred EeeecCC-----------CcE------------------------EEEEEcCCCCEEEEEeC------------------
Q 013184 314 MPLCGHL-----------DFS------------------------FASAWHPDGRIFATGNQ------------------ 340 (448)
Q Consensus 314 ~~l~~h~-----------~~v------------------------~~~~~~p~g~~l~s~~~------------------ 340 (448)
..+.... .++ ..++++|++.++++...
T Consensus 351 ~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~ 430 (677)
T 1kb0_A 351 SAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAG 430 (677)
T ss_dssp EEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCC
T ss_pred ccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccc
Confidence 7654211 111 14688998888777543
Q ss_pred -------------------------CCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 013184 341 -------------------------DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG 395 (448)
Q Consensus 341 -------------------------d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~ 395 (448)
.+.|..||+.+ ++.+-.+. +..++....++..|..+++++.++.|++||..++
T Consensus 431 ~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG 508 (677)
T 1kb0_A 431 PGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG 508 (677)
T ss_dssp TTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred ccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCC
Confidence 16799999976 66665554 3334445556677888999999999999999999
Q ss_pred ceeeeeecCc-CceEEEEEccCCCeEEEE
Q 013184 396 FEKEQEIDFF-GEISGMTFSPDTEALFIG 423 (448)
Q Consensus 396 ~~~~~~~~~~-~~v~~~~fspdg~~L~~~ 423 (448)
+.+..+.... ..-.-+.|.++|+.+++.
T Consensus 509 ~~lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 509 EKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp CEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred ceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 9988776432 233446677888755543
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.09 E-value=4.1e-08 Score=102.08 Aligned_cols=270 Identities=13% Similarity=0.080 Sum_probs=169.6
Q ss_pred CCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcCCCC
Q 013184 144 KHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQPG 222 (448)
Q Consensus 144 ~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~ 222 (448)
.+.||+++ ++.|.-+|..+++..=........... +. .........+++.+..+++++.+|.|..+|..+.+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~---~~----~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~ 149 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTG---FK----GCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGK 149 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGG---GG----SSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccc---cc----ccccCCCCCceEECCEEEEEcCCCEEEEEECCCCC
Confidence 45677664 467888898776554444333211100 00 00000012344567889999999999999998887
Q ss_pred ceeEEEeecCC---CCceeeEEEEeCCCCCeeEEEEeC------CCcEEEEecCCceEEEEeecCCC-------------
Q 013184 223 VSFCSRTTYDE---NAITNAVEIYNSPSGGIHFMASNN------DCGVRDFDMERFQLSKHFSFPWP------------- 280 (448)
Q Consensus 223 ~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~~------------- 280 (448)
........... ..+.....+ .+. .+++++. ++.|+.+|.++++.+..+....+
T Consensus 150 ~~W~~~~~~~~~~~~~~~~~p~v----~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~ 224 (677)
T 1kb0_A 150 EVWHQNTFEGQKGSLTITGAPRV----FKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKR 224 (677)
T ss_dssp EEEEEETTTTCCSSCBCCSCCEE----ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHH
T ss_pred EEeeecCCcCcCcCcccccCcEE----ECC-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccc
Confidence 55433322010 111111111 133 4444443 68999999999999988763111
Q ss_pred --------------------eeEEEECCCCCEEEEEecCC-------------------cEEEEECCCCceeEeeec--C
Q 013184 281 --------------------VNHTSLSPDGKLLVIVGDNP-------------------EGILVDSQTGKAIMPLCG--H 319 (448)
Q Consensus 281 --------------------v~~~~~sp~~~~l~~~~~d~-------------------~i~i~d~~~~~~~~~l~~--h 319 (448)
...++++|++.+++++..++ .|..+|..+|+.+..++. |
T Consensus 225 g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~ 304 (677)
T 1kb0_A 225 AARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPG 304 (677)
T ss_dssp HHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT
T ss_pred ccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCC
Confidence 13578889888998887664 499999999999877653 2
Q ss_pred C-------CcEEEEEEcCCC---CEEEEEeCCCcEEEEEccCCCcceEEEccCC-----------CCe------------
Q 013184 320 L-------DFSFASAWHPDG---RIFATGNQDKTCRVWDVRNLSKSVAVLKGNL-----------GAI------------ 366 (448)
Q Consensus 320 ~-------~~v~~~~~~p~g---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----------~~v------------ 366 (448)
. .....+....+| ..++.++.+|.+.++|..+ ++.+..+.... .++
T Consensus 305 d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 383 (677)
T 1kb0_A 305 DNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN-GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQ 383 (677)
T ss_dssp CCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCE
T ss_pred cccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC-CCEeccccccccCcccccCCCCceeeccccCcCCCcc
Confidence 1 112223333477 6899999999999999987 66654443211 011
Q ss_pred ------------EEEEEcCCCCEEEEEeC-------------------------------------------CCeEEEEE
Q 013184 367 ------------RSIRFTSDGNFMAMAEP-------------------------------------------ADFVHVYD 391 (448)
Q Consensus 367 ------------~~l~~sp~g~~l~s~~~-------------------------------------------d~~v~vwd 391 (448)
..++++|++.++++... .+.|..||
T Consensus 384 ~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D 463 (677)
T 1kb0_A 384 DAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWD 463 (677)
T ss_dssp ECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEE
T ss_pred EECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEe
Confidence 15688999888877543 27899999
Q ss_pred CCCCceeeeeecCcCceEEEEEccCCCeEEEEEecC
Q 013184 392 AKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 392 ~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
+.+++.+.+.. +..++.+..+++++..+++++.|+
T Consensus 464 ~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg 498 (677)
T 1kb0_A 464 PVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADG 498 (677)
T ss_dssp TTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTS
T ss_pred CCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCC
Confidence 99998877665 334556666778888888886554
No 228
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.06 E-value=1.1e-06 Score=80.19 Aligned_cols=216 Identities=12% Similarity=-0.000 Sum_probs=135.5
Q ss_pred eeEEEEe--cC-CEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc
Q 013184 193 QVSTLAV--RD-NLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF 269 (448)
Q Consensus 193 ~i~~l~~--~~-~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~ 269 (448)
....+++ ++ .++++-...+.|.+++++..... .+..........+.+ .+.++.++++....+.|.++++...
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~---~~~~~~~~~p~~ia~--d~~~~~lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT---TIIRQDLGSPEGIAL--DHLGRTIFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE---EEECTTCCCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSC
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE---EEEECCCCCccEEEE--EecCCeEEEEECCCCEEEEEEcCCC
Confidence 3567777 33 45556666789999998765432 111111123445555 7766656666667789999998754
Q ss_pred eEEEEee-cCCCeeEEEECCCCCEEEEEec---CCcEEEEECCCCceeEeee-cCCCcEEEEEEcCCCCEEEEEe-CCCc
Q 013184 270 QLSKHFS-FPWPVNHTSLSPDGKLLVIVGD---NPEGILVDSQTGKAIMPLC-GHLDFSFASAWHPDGRIFATGN-QDKT 343 (448)
Q Consensus 270 ~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~---d~~i~i~d~~~~~~~~~l~-~h~~~v~~~~~~p~g~~l~s~~-~d~~ 343 (448)
....... .....+.++++|++..|+++.. .+.|..+++... ....+. ........++++|++..|+.+. ..+.
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~ 190 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR 190 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE
Confidence 3322232 2245789999997666666553 367888887533 223232 3345678999999877665554 5678
Q ss_pred EEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeeeecCc-CceEEEEEccCCC
Q 013184 344 CRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAE-PADFVHVYDAKNGFEKEQEIDFF-GEISGMTFSPDTE 418 (448)
Q Consensus 344 i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~-~~v~~~~fspdg~ 418 (448)
|.++++.. ......+.. ......++.. +..|..+. ..+.|.++|..+++.+..+.... ....++++.|++.
T Consensus 191 I~~~~~~g-~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 191 AECLNPAQ-PGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEETTE-EEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EEEEecCC-CceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 99999863 222223332 2334566654 45555555 45799999999888777665432 2578999999865
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.05 E-value=1.1e-07 Score=99.15 Aligned_cols=262 Identities=14% Similarity=0.117 Sum_probs=161.4
Q ss_pred CCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEe------CCCeEEEE
Q 013184 144 KHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGG------FQGELICK 216 (448)
Q Consensus 144 ~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~------~dg~i~vw 216 (448)
...||+.+ ++.|..+|..+++..-......+... . ......+ +..++ .+++++ .+|.|..+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~-----~---~~~~~sP---~v~~g-~v~vg~~~~~~~~~g~v~a~ 188 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKR-----S---YTITGAP---RVVNG-KVVIGNGGAEFGVRGYVTAY 188 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTS-----C---CBCCSCC---EEETT-EEEECCBCTTTCCBCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCC-----C---ccccCCc---EEECC-EEEEEeCCCccCCCCEEEEE
Confidence 45677765 77899999988776544443201000 0 0000111 11244 444443 37899999
Q ss_pred EcCCCCceeEEEeecCCC----------------------------CceeeEEEEeCCCCCeeEEEEeCCC---------
Q 013184 217 YLDQPGVSFCSRTTYDEN----------------------------AITNAVEIYNSPSGGIHFMASNNDC--------- 259 (448)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~~~~l~s~s~dg--------- 259 (448)
|..+.+............ .....+.+ +|.++ +++.++.++
T Consensus 189 D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~--d~~~~-~vy~~~~~g~~w~~~~~~ 265 (689)
T 1yiq_A 189 DAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAY--DPELN-LLYIGVGNGSLWDPKWRS 265 (689)
T ss_dssp ETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEE--ETTTT-EEEEECCCEESSCHHHHH
T ss_pred ECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeE--cCCCC-EEEEeCCCCCccccCCCC
Confidence 998887554333211100 00012323 56655 566676665
Q ss_pred ----------cEEEEecCCceEEEEeecC----------CCeeEEEECCCCC---EEEEEecCCcEEEEECCCCceeEee
Q 013184 260 ----------GVRDFDMERFQLSKHFSFP----------WPVNHTSLSPDGK---LLVIVGDNPEGILVDSQTGKAIMPL 316 (448)
Q Consensus 260 ----------~v~iwd~~~~~~~~~~~~~----------~~v~~~~~sp~~~---~l~~~~~d~~i~i~d~~~~~~~~~l 316 (448)
.|..+|..+++.+..++.. .++.......+|+ .+++++.+|.++++|..+|+.+...
T Consensus 266 ~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 345 (689)
T 1yiq_A 266 QAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAK 345 (689)
T ss_dssp TTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccc
Confidence 3999999999999888721 1122222223554 7888899999999999999987433
Q ss_pred ecCC-Cc--------------------------------------EEEEEEcCCCCEEEEEeC-----------------
Q 013184 317 CGHL-DF--------------------------------------SFASAWHPDGRIFATGNQ----------------- 340 (448)
Q Consensus 317 ~~h~-~~--------------------------------------v~~~~~~p~g~~l~s~~~----------------- 340 (448)
.... .. -..++++|+..++++...
T Consensus 346 ~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~ 425 (689)
T 1yiq_A 346 GIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNP 425 (689)
T ss_dssp ESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCS
T ss_pred cccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccc
Confidence 2110 00 012688888887776532
Q ss_pred ----------------------------CCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 013184 341 ----------------------------DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDA 392 (448)
Q Consensus 341 ----------------------------d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~ 392 (448)
+|.|+.||+.+ ++.+-.+..+. ++..-.++..|..+++|+.|+.|+.||.
T Consensus 426 ~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 426 FKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp CTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEEC
Confidence 37799999976 66666655443 3333355667889999999999999999
Q ss_pred CCCceeeeeecCcC-ceEEEEEccCCCeEEE
Q 013184 393 KNGFEKEQEIDFFG-EISGMTFSPDTEALFI 422 (448)
Q Consensus 393 ~~~~~~~~~~~~~~-~v~~~~fspdg~~L~~ 422 (448)
++|+.+.++....+ ...-+.|..+|+..++
T Consensus 504 ~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 504 DTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp TTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 99999877764332 2244777889874443
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.03 E-value=7.3e-07 Score=85.62 Aligned_cols=258 Identities=11% Similarity=0.071 Sum_probs=157.5
Q ss_pred CCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcCCCC
Q 013184 144 KHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQPG 222 (448)
Q Consensus 144 ~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~ 222 (448)
.+.||++. ++.|..+|..+++..-.......... ...............+..+++++.+|.|..++..+.+
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGW--------FSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---C--------CSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCcccccc--------ccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCC
Confidence 56677765 56799999877766544444321100 0000011234455578888999999999999998877
Q ss_pred ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCee------EEEECCCCCEEEEE
Q 013184 223 VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVN------HTSLSPDGKLLVIV 296 (448)
Q Consensus 223 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~------~~~~sp~~~~l~~~ 296 (448)
......... .......+ . +. .+++++.++.|..+|..+++.+..+....++. .... .+..++++
T Consensus 125 ~~W~~~~~~---~~~~~p~~---~-~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g 194 (376)
T 3q7m_A 125 VAWQTKVAG---EALSRPVV---S-DG-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVG 194 (376)
T ss_dssp EEEEEECSS---CCCSCCEE---E-TT-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEEC
T ss_pred EEEEEeCCC---ceEcCCEE---E-CC-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEE
Confidence 543333221 11111112 1 23 67788889999999999999888877543332 1122 24578888
Q ss_pred ecCCcEEEEECCCCceeEeeecCCCc-------EEEEEEcC--CCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeE
Q 013184 297 GDNPEGILVDSQTGKAIMPLCGHLDF-------SFASAWHP--DGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIR 367 (448)
Q Consensus 297 ~~d~~i~i~d~~~~~~~~~l~~h~~~-------v~~~~~~p--~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 367 (448)
..++.+..+|..+|+.+......... +..+.-.| .+..++.++.++.+..+|.++ ++.+.... .....
T Consensus 195 ~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t-G~~~w~~~--~~~~~ 271 (376)
T 3q7m_A 195 GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS-GQIMWKRE--LGSVN 271 (376)
T ss_dssp CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT-CCEEEEEC--CCCEE
T ss_pred cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC-CcEEeecc--CCCCC
Confidence 88999999999999987766532110 00011112 346777788899999999976 55554443 23344
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecC-cCceEEEEEccCCCeEEEEEec
Q 013184 368 SIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDF-FGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 368 ~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-~~~v~~~~fspdg~~L~~~~~D 426 (448)
.+.. ++..|.+++.++.|..+|..+++.+...... ...+..+... +..|++++.+
T Consensus 272 ~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~ 327 (376)
T 3q7m_A 272 DFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSE 327 (376)
T ss_dssp EEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTT
T ss_pred CceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCC
Confidence 4444 3667888888999999999999877655422 2223333332 4566666554
No 231
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.03 E-value=1.8e-07 Score=83.21 Aligned_cols=189 Identities=16% Similarity=0.151 Sum_probs=133.3
Q ss_pred EeecCCCCceeeEEEEeCCCCCeeEEEEeCC--CcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEE-ecCCcEEE
Q 013184 228 RTTYDENAITNAVEIYNSPSGGIHFMASNND--CGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIV-GDNPEGIL 304 (448)
Q Consensus 228 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~i 304 (448)
.........+..+.+ ++ +.++.+.+.+ ..|+.+|+++++.+.....+.........+.++.|... -.++.+.+
T Consensus 14 ~~phd~~~ftqGL~~--~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 14 RYPHDTTAFTEGLFY--LR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFV 89 (243)
T ss_dssp EEECCTTCCEEEEEE--ET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EcCCCCccccccEEE--EC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence 345555677778876 33 4566776665 48999999999999998866665555444445555555 46789999
Q ss_pred EECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCC-----CCeEEEEEcCCCCEEE
Q 013184 305 VDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNL-----GAIRSIRFTSDGNFMA 379 (448)
Q Consensus 305 ~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~v~~l~~sp~g~~l~ 379 (448)
+|..+.+.+.++...... ..++ +++..|+.+..++.|.++|..+ .+.+..+.-.. ..++.+.|. +|+..+
T Consensus 90 ~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lya 164 (243)
T 3mbr_X 90 YDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDT-LQQVGSIKVTAGGRPLDNLNELEWV-NGELLA 164 (243)
T ss_dssp EETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCC-CeEEEEEEEccCCcccccceeeEEe-CCEEEE
Confidence 999999999988753322 4555 4566666667788999999976 55555554321 345667776 666554
Q ss_pred EEeCCCeEEEEECCCCceeeeeecC-------------cCceEEEEEccCCCeEEEEEe
Q 013184 380 MAEPADFVHVYDAKNGFEKEQEIDF-------------FGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 380 s~~~d~~v~vwd~~~~~~~~~~~~~-------------~~~v~~~~fspdg~~L~~~~~ 425 (448)
..-..+.|.+.|.++++.+..+.-. ..-.++||++|+++.|++.+.
T Consensus 165 nvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 165 NVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 4446789999999999887665421 135789999999888888863
No 232
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.02 E-value=5.1e-08 Score=87.48 Aligned_cols=186 Identities=12% Similarity=0.033 Sum_probs=131.8
Q ss_pred eecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEE-EecCCcEEEEEC
Q 013184 229 TTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVI-VGDNPEGILVDS 307 (448)
Q Consensus 229 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~i~i~d~ 307 (448)
........+..+.+ + ++.++++.+.+|.|+++|+++++.+..+ .+.........+.++.|+. .-.++.+.+||.
T Consensus 49 ~phd~~~ftqGL~~--~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~ 123 (268)
T 3nok_A 49 YPHATNAFTQGLVF--H--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSG 123 (268)
T ss_dssp EECCTTCCEEEEEE--E--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEET
T ss_pred EcCCCccccceEEE--E--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEEC
Confidence 33444555677766 2 4568888888999999999999988887 5555554333334444444 446889999999
Q ss_pred CCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCC-----CCeEEEEEcCCCCEEEEEe
Q 013184 308 QTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNL-----GAIRSIRFTSDGNFMAMAE 382 (448)
Q Consensus 308 ~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~v~~l~~sp~g~~l~s~~ 382 (448)
.+.+.+.++..... -..++ ++++.|+.+..++.|.++|..+ .+.+..+.-.. ..++.+.|. +|+..+..-
T Consensus 124 ~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw 198 (268)
T 3nok_A 124 MPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQPVELINELECA-NGVIYANIW 198 (268)
T ss_dssp TTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred CcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCcccccccccEEe-CCEEEEEEC
Confidence 99999998875332 23444 4678787777788999999976 56665554321 245677887 776554444
Q ss_pred CCCeEEEEECCCCceeeeeecC-------------cCceEEEEEccCCCeEEEEE
Q 013184 383 PADFVHVYDAKNGFEKEQEIDF-------------FGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 383 ~d~~v~vwd~~~~~~~~~~~~~-------------~~~v~~~~fspdg~~L~~~~ 424 (448)
..+.|.+.|.++++.+..+.-. ..-.++|||+|+++.|++.+
T Consensus 199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 6789999999999877665421 13578999999988888776
No 233
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.01 E-value=1.9e-08 Score=100.33 Aligned_cols=222 Identities=12% Similarity=0.043 Sum_probs=146.8
Q ss_pred cCCEEEEEeC-CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEE-----------------eCCCcE
Q 013184 200 RDNLLIAGGF-QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMAS-----------------NNDCGV 261 (448)
Q Consensus 200 ~~~~lvsg~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-----------------s~dg~v 261 (448)
+|++|..... ++.|.+.|+.+.+......+.... -...+.+...|+++..++++ ..++.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~--~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK--GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC--SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCC--CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 7777766554 567999999887644333332222 23344432228887444443 235689
Q ss_pred EEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCC--------------------------------------cEE
Q 013184 262 RDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNP--------------------------------------EGI 303 (448)
Q Consensus 262 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--------------------------------------~i~ 303 (448)
.++|.++.+....+...+....++++|+|+++++.+.+. .|.
T Consensus 178 tvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 999999999999988655678899999999999988543 467
Q ss_pred EEECCC--Cce-eEeeecCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEEccCCC-----------cceEEEccCCCCeEE
Q 013184 304 LVDSQT--GKA-IMPLCGHLDFSFASAWHPDGRIFATGN-QDKTCRVWDVRNLS-----------KSVAVLKGNLGAIRS 368 (448)
Q Consensus 304 i~d~~~--~~~-~~~l~~h~~~v~~~~~~p~g~~l~s~~-~d~~i~iwd~~~~~-----------~~~~~~~~~~~~v~~ 368 (448)
+.|.++ ++. +..+... ....++.++|||+++++++ .+.+|.++|+.+.. ..+..+.. ......
T Consensus 258 VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h 335 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLH 335 (595)
T ss_dssp EEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEE
T ss_pred EEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcce
Confidence 777776 444 4444321 2345789999999877766 57889999997521 12233332 234678
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCC----------CceeeeeecCcCc-----eEEEEEccCCCeEEEEEe
Q 013184 369 IRFTSDGNFMAMAEPADFVHVYDAKN----------GFEKEQEIDFFGE-----ISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 369 l~~sp~g~~l~s~~~d~~v~vwd~~~----------~~~~~~~~~~~~~-----v~~~~fspdg~~L~~~~~ 425 (448)
++|+|+|...++..-++.|.+||+.. .+.+..+.-|..+ -.++.++|||++|+++..
T Consensus 336 ~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 336 TAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 99999994444556789999999876 3444444444332 123456899999999843
No 234
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.01 E-value=5.1e-07 Score=86.72 Aligned_cols=254 Identities=13% Similarity=0.063 Sum_probs=159.5
Q ss_pred CCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcCCC
Q 013184 143 SKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQP 221 (448)
Q Consensus 143 ~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~ 221 (448)
..+.||+.+ ++.|..+|..+++..-...+.+... .+....+..+++++.+|.|..++..+.
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~------------------~~p~~~~~~v~v~~~~g~l~~~d~~tG 163 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEAL------------------SRPVVSDGLVLIHTSNGQLQALNEADG 163 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCC------------------SCCEEETTEEEEECTTSEEEEEETTTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceE------------------cCCEEECCEEEEEcCCCeEEEEECCCC
Confidence 456677764 5679999988877655554443211 111234668888999999999999877
Q ss_pred CceeEEEeecCCC--CceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCee--------EEEECC--C
Q 013184 222 GVSFCSRTTYDEN--AITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVN--------HTSLSP--D 289 (448)
Q Consensus 222 ~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~--------~~~~sp--~ 289 (448)
............. .......+ . +. .+++++.++.|..+|..+++.+.......+.. .+...| .
T Consensus 164 ~~~W~~~~~~~~~~~~~~~~~~~---~-~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~ 238 (376)
T 3q7m_A 164 AVKWTVNLDMPSLSLRGESAPTT---A-FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV 238 (376)
T ss_dssp CEEEEEECCC-----CCCCCCEE---E-TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE
T ss_pred cEEEEEeCCCCceeecCCCCcEE---E-CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE
Confidence 6543332211100 00011111 1 23 57778889999999999999888776332110 011222 3
Q ss_pred CCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEcc-CCCCeEE
Q 013184 290 GKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKG-NLGAIRS 368 (448)
Q Consensus 290 ~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~ 368 (448)
+..+++++.++.+..+|..+|+.+..... .....+.. ++..++.++.++.+..+|..+ ++.+-.... ....+..
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~ 313 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDG-GVTLWTQSDLLHRLLTS 313 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTT-CCEEEEECTTTTSCCCC
T ss_pred CCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCC-CcEEEeecccCCCcccC
Confidence 56788888899999999999998766542 23344444 366788888899999999976 555554442 1222222
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceE-EEEEccCCCeEEEEEecCC
Q 013184 369 IRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEIS-GMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 369 l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~-~~~fspdg~~L~~~~~D~~ 428 (448)
+.. .+..|++++.+|.|+++|..+++.+.........+. .+.. .+..|++++.++.
T Consensus 314 ~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~ 370 (376)
T 3q7m_A 314 PVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGT 370 (376)
T ss_dssp CEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSC
T ss_pred CEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCE
Confidence 333 256788889999999999999988766554333332 2222 2457888877754
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.00 E-value=2.7e-08 Score=96.04 Aligned_cols=187 Identities=11% Similarity=0.144 Sum_probs=131.3
Q ss_pred CCCCeeEEEEeCCCcEEEEecCCc----eEEEEee-------cC-CCeeEEEECCCCCEEEEEecC------CcEEEEEC
Q 013184 246 PSGGIHFMASNNDCGVRDFDMERF----QLSKHFS-------FP-WPVNHTSLSPDGKLLVIVGDN------PEGILVDS 307 (448)
Q Consensus 246 ~~~~~~l~s~s~dg~v~iwd~~~~----~~~~~~~-------~~-~~v~~~~~sp~~~~l~~~~~d------~~i~i~d~ 307 (448)
++.+.+++.+-.++.|.++|+.+. ++.+.++ .. .....+...|+| +++++..+ +.+.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 566777888888999999999765 6777773 11 234567889999 66666555 78999999
Q ss_pred CCCceeEeeecCC---CcEEEEEEcCCCCEEEEEe-------------------CCCcEEEEEccCCCcceEEEccC-C-
Q 013184 308 QTGKAIMPLCGHL---DFSFASAWHPDGRIFATGN-------------------QDKTCRVWDVRNLSKSVAVLKGN-L- 363 (448)
Q Consensus 308 ~~~~~~~~l~~h~---~~v~~~~~~p~g~~l~s~~-------------------~d~~i~iwd~~~~~~~~~~~~~~-~- 363 (448)
.+++.+.++.... ...+.+.|+|+++.+++.. ...+|.+||+.+ .+.+.++... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-~k~~~tI~vg~~g 250 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-RKRIHSLTLGEEN 250 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-TEEEEEEESCTTE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC-CcEeeEEecCCCC
Confidence 9999998886322 2234588999999888885 367899999986 6677776643 1
Q ss_pred CCeEEEEE--cCCCCEEEEEeC------CCeEEEEECCCCceee-ee---ecC----------------cCceEEEEEcc
Q 013184 364 GAIRSIRF--TSDGNFMAMAEP------ADFVHVYDAKNGFEKE-QE---IDF----------------FGEISGMTFSP 415 (448)
Q Consensus 364 ~~v~~l~~--sp~g~~l~s~~~------d~~v~vwd~~~~~~~~-~~---~~~----------------~~~v~~~~fsp 415 (448)
.....+.| +|+|+++.+++. ++.|.+|....+.... +. ... ...+..|.+||
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~ 330 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL 330 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence 23456666 999998888764 5678776654432110 10 000 24578999999
Q ss_pred CCCeEEEEEecCCcceEEEEe
Q 013184 416 DTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 416 dg~~L~~~~~D~~~~~ll~~~ 436 (448)
||++|+++.+.. +.+..+.
T Consensus 331 DGrfLYVSnrg~--d~Vavfd 349 (462)
T 2ece_A 331 DDKFLYLSLWGI--GEVRQYD 349 (462)
T ss_dssp TSCEEEEEETTT--TEEEEEE
T ss_pred CCCEEEEEeCCC--CEEEEEE
Confidence 999999998754 3444444
No 236
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.99 E-value=3.9e-07 Score=94.92 Aligned_cols=270 Identities=15% Similarity=0.117 Sum_probs=166.4
Q ss_pred CCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcCCCC
Q 013184 144 KHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQPG 222 (448)
Q Consensus 144 ~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~ 222 (448)
...||+++ ++.|.-+|..+++..=............ .. .....-.++++.+..+++++.+|.|..+|..+.+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~-~~------~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~ 142 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAG-EA------CCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQ 142 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGG-GC------TTCSCCCCCEEETTEEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccc-cc------cccCCCCccEEECCEEEEEccCCEEEEEECCCCC
Confidence 55677764 5678899987766554443321110000 00 0000012234567788999999999999998887
Q ss_pred ceeEEEeecCCC---CceeeEEEEeCCCCCeeEEEEe------CCCcEEEEecCCceEEEEeec-C-C------------
Q 013184 223 VSFCSRTTYDEN---AITNAVEIYNSPSGGIHFMASN------NDCGVRDFDMERFQLSKHFSF-P-W------------ 279 (448)
Q Consensus 223 ~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~-~-~------------ 279 (448)
.........+.. .+..+..+ .+ . .+++++ .++.|+.||.++|+++..+.. + .
T Consensus 143 ~~W~~~~~~~~~~~~~~~~sP~v---~~-g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~ 217 (689)
T 1yiq_A 143 RAWSVDTRADHKRSYTITGAPRV---VN-G-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEI 217 (689)
T ss_dssp EEEEEECCSCTTSCCBCCSCCEE---ET-T-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHH
T ss_pred EeeeecCcCCCCCCccccCCcEE---EC-C-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccc
Confidence 654433320111 11111111 13 3 344443 368999999999999887752 1 0
Q ss_pred ------------------CeeEEEECCCCCEEEEEecCCc-------------------EEEEECCCCceeEeeec--CC
Q 013184 280 ------------------PVNHTSLSPDGKLLVIVGDNPE-------------------GILVDSQTGKAIMPLCG--HL 320 (448)
Q Consensus 280 ------------------~v~~~~~sp~~~~l~~~~~d~~-------------------i~i~d~~~~~~~~~l~~--h~ 320 (448)
....+++.|++.+++++..++. |..+|..+|+.+..++. |.
T Consensus 218 ~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d 297 (689)
T 1yiq_A 218 AAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGD 297 (689)
T ss_dssp HHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred cccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcc
Confidence 0125788898899999887753 99999999999887764 21
Q ss_pred -------CcEEEEEEcCCCC---EEEEEeCCCcEEEEEccCCCcceEEEccCC---------------------------
Q 013184 321 -------DFSFASAWHPDGR---IFATGNQDKTCRVWDVRNLSKSVAVLKGNL--------------------------- 363 (448)
Q Consensus 321 -------~~v~~~~~~p~g~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--------------------------- 363 (448)
..+.......+|+ .++.++.+|.++++|.++ ++.+.......
T Consensus 298 ~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~ 376 (689)
T 1yiq_A 298 AWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRAT-GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNG 376 (689)
T ss_dssp CSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSS
T ss_pred cccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCC-CCEeccccccccccccccCccCCCcccchhhccccCCC
Confidence 1222222223565 788999999999999977 65553221100
Q ss_pred ----------C--CeEEEEEcCCCCEEEEEeC---------------------------------------------CCe
Q 013184 364 ----------G--AIRSIRFTSDGNFMAMAEP---------------------------------------------ADF 386 (448)
Q Consensus 364 ----------~--~v~~l~~sp~g~~l~s~~~---------------------------------------------d~~ 386 (448)
+ .-..++|+|+..+|++... +|.
T Consensus 377 ~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~ 456 (689)
T 1yiq_A 377 KRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGK 456 (689)
T ss_dssp SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEE
T ss_pred CeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCccee
Confidence 0 0123688998887776532 377
Q ss_pred EEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecC
Q 013184 387 VHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 387 v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
|+.||+.+++.+.+...+. ++.+..++..|..+++|+.|+
T Consensus 457 l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg 496 (689)
T 1yiq_A 457 LIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADG 496 (689)
T ss_dssp EEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTS
T ss_pred EEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCC
Confidence 9999999999887765443 344446677788888886664
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.99 E-value=4.4e-08 Score=92.02 Aligned_cols=210 Identities=12% Similarity=0.072 Sum_probs=141.1
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCC
Q 013184 201 DNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPW 279 (448)
Q Consensus 201 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~ 279 (448)
+..|..|+.+|.|..++.. ...... ... ......++.+ .+++ .+..++.++.|..+|.. ++....+. ...
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~--~~~-~~~~~~~~~~--~~~g--~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~ 177 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWR--FKT-KKAIYATPIV--SEDG--TIYVGSNDNYLYAINPD-GTEKWRFKTNDA 177 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEE--EEC-SSCCCSCCEE--CTTS--CEEEECTTSEEEEECTT-SCEEEEEECSSC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEE--EcC-CCceeeeeEE--cCCC--EEEEEcCCCEEEEECCC-CCEeEEEecCCC
Confidence 7778888889999999877 443222 221 2223333333 4555 46778888999999998 77776666 345
Q ss_pred CeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEE
Q 013184 280 PVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVL 359 (448)
Q Consensus 280 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~ 359 (448)
.+.++...+++.+.+ ++ +.+..+| .+++.+.........+.++...++|. |..++.++.+..++. + +..+..+
T Consensus 178 ~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~-g~~~~~~ 250 (330)
T 3hxj_A 178 ITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-D-GTEKWRF 250 (330)
T ss_dssp CCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-T-SCEEEEE
T ss_pred ceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-C-CCEeEEe
Confidence 567777777777554 44 7899999 77777766665556677888888876 455666777888875 3 4555555
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 360 KGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 360 ~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
......+.++.+.++| .|..++.++.|..+|. +++...........+.++...++|+ |++++.+|.+
T Consensus 251 ~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~ 317 (330)
T 3hxj_A 251 KTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKF 317 (330)
T ss_dssp ECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCE
T ss_pred eCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeE
Confidence 5444444556666666 4566778888999995 6776655554455677888877876 6667766543
No 238
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.98 E-value=1.5e-08 Score=96.90 Aligned_cols=173 Identities=6% Similarity=-0.189 Sum_probs=121.0
Q ss_pred eEEEEeCCC----cEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEe----------cCCcEEEEECCCCceeEee
Q 013184 251 HFMASNNDC----GVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVG----------DNPEGILVDSQTGKAIMPL 316 (448)
Q Consensus 251 ~l~s~s~dg----~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------~d~~i~i~d~~~~~~~~~l 316 (448)
.+++...++ .|.++|..+++.+..+...... .+.++|++++++++. .++.|.+||+.+++.+.++
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I 112 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI 112 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEE
Confidence 444444444 8889999999999999843333 899999999999886 3678999999999999988
Q ss_pred ecC-------CCcEEEEEEcCCCCEEEEEeC--CCcEEE--EEccC------CC--------------------------
Q 013184 317 CGH-------LDFSFASAWHPDGRIFATGNQ--DKTCRV--WDVRN------LS-------------------------- 353 (448)
Q Consensus 317 ~~h-------~~~v~~~~~~p~g~~l~s~~~--d~~i~i--wd~~~------~~-------------------------- 353 (448)
..+ ......++++|||+++++++. ...+.+ +|+.+ .+
T Consensus 113 ~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~ 192 (368)
T 1mda_H 113 ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDL 192 (368)
T ss_dssp EETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEEC
T ss_pred ECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEEC
Confidence 643 123457899999999998875 356888 77732 00
Q ss_pred --------cc------------------------------eEEEcc--CC---------------------CCeEEEEEc
Q 013184 354 --------KS------------------------------VAVLKG--NL---------------------GAIRSIRFT 372 (448)
Q Consensus 354 --------~~------------------------------~~~~~~--~~---------------------~~v~~l~~s 372 (448)
+. +..+.. .. .....++++
T Consensus 193 ~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 193 AAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp CSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred ccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence 00 000000 00 001116799
Q ss_pred CCCCEEEEEeC---------CCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 373 SDGNFMAMAEP---------ADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 373 p~g~~l~s~~~---------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
|+|+.|.++.. ++.+.++|+.+++.+..+... ....+|+|+|||+.|+++..
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~ 333 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANS 333 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC-CCcceEEECCCCCEEEEEcc
Confidence 99988887643 235779999999887766543 36899999999997666654
No 239
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.97 E-value=6.4e-11 Score=114.20 Aligned_cols=168 Identities=11% Similarity=0.083 Sum_probs=94.6
Q ss_pred eEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCc-EE-EEEE
Q 013184 251 HFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDF-SF-ASAW 328 (448)
Q Consensus 251 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~-v~-~~~~ 328 (448)
.+++++.|+.|+.||..+++.+..+.. .++.+..+.+++..+++++.++.|+.||..+|+.+..+..+... +. +...
T Consensus 11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~ 89 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCR 89 (369)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceE
Confidence 788899999999999999999988887 66666666667878888889999999999999887665433211 10 0011
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCce
Q 013184 329 HPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEI 408 (448)
Q Consensus 329 ~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v 408 (448)
. .+..+++++.++.|+.||.++ ++.+..+..+. ...++|++..|++++.++.|+.||..+|+.+..+... ..
T Consensus 90 ~-~~~~v~~g~~dg~v~a~D~~t-G~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~--~~ 161 (369)
T 2hz6_A 90 S-SDGILYMGKKQDIWYVIDLLT-GEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF--DY 161 (369)
T ss_dssp ------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE--EE
T ss_pred e-cCCEEEEEeCCCEEEEEECCC-CcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc--cc
Confidence 1 345678888899999999987 66665555443 2456778889999999999999999999876554321 12
Q ss_pred EEEEEccCC---CeEEEEEecC
Q 013184 409 SGMTFSPDT---EALFIGVWDR 427 (448)
Q Consensus 409 ~~~~fspdg---~~L~~~~~D~ 427 (448)
...++++++ ..+++++.|+
T Consensus 162 ~~~~~~~~~~~~~~v~~~~~dg 183 (369)
T 2hz6_A 162 AASLPEDDVDYKMSHFVSNGDG 183 (369)
T ss_dssp CCBCCCCCTTCCCCEEEEETSC
T ss_pred cCccccCCccccceEEEECCCC
Confidence 233344332 4566665554
No 240
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.95 E-value=3.1e-08 Score=94.71 Aligned_cols=249 Identities=9% Similarity=-0.035 Sum_probs=159.5
Q ss_pred ceeeeCCCCeEEEec-----------CCeEEEEecCCCceeEEEecCC-CCCCCCCCCCCcccCCcceeeEEEEecCCEE
Q 013184 137 NLVWSTSKHDVYLMS-----------HFSIVHWSSLSSKRTEVLDVSG-HVAPCEKHPGNLLEGFTQTQVSTLAVRDNLL 204 (448)
Q Consensus 137 ~l~~~~~~~~v~~~~-----------~~~v~~w~~~~~~~~~~~~~~g-h~~p~~~~~~~~~~~~~~~~i~~l~~~~~~l 204 (448)
.+..++....+|+++ ++.|.+||+.+.+....+.+.+ ...+....| .-..++.++++|
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P----------~~ia~SpDGk~l 138 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV----------HIIGNCASSACL 138 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT----------TSEEECTTSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCc----------ceEEEcCCCCEE
Confidence 677888889999986 4679999999887776666542 110001111 124566689988
Q ss_pred EEEeC--CCeEEE--EEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC-----ceEEEE-
Q 013184 205 IAGGF--QGELIC--KYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER-----FQLSKH- 274 (448)
Q Consensus 205 vsg~~--dg~i~v--w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~-----~~~~~~- 274 (448)
+++.. ...+.+ +|+.+ . ..+... + +..+ .|++...+++.+.|+.+.+.++++ ++....
T Consensus 139 yVan~~~~~~v~V~~iD~~t---v--~~i~v~--~---~~~~--~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~ 206 (368)
T 1mda_H 139 LFFLFGSSAAAGLSVPGASD---D--QLTKSA--S---CFHI--HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC 206 (368)
T ss_dssp EEEECSSSCEEEEEETTTEE---E--EEEECS--S---CCCC--EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred EEEccCCCCeEEEEEEchhh---c--eEEECC--C---ceEE--ccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEe
Confidence 88875 457888 77765 1 222111 1 1111 356666777778899998899887 554321
Q ss_pred ---ee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCc--eeEeeec-------CC---CcEEEEEEcCCCCEEEEE
Q 013184 275 ---FS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGK--AIMPLCG-------HL---DFSFASAWHPDGRIFATG 338 (448)
Q Consensus 275 ---~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~--~~~~l~~-------h~---~~v~~~~~~p~g~~l~s~ 338 (448)
+. ...+. . ++++..++..+. +.+.+.|..++. .+..+.- +. .....++++|+++.++.+
T Consensus 207 t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~ 281 (368)
T 1mda_H 207 TGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL 281 (368)
T ss_dssp CTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred eeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence 11 12333 3 566677666666 899999986543 2222211 00 111126899999988765
Q ss_pred eC---------CCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCE-EEEEe-CCCeEEEEECCCCceeeeeecCcCc
Q 013184 339 NQ---------DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNF-MAMAE-PADFVHVYDAKNGFEKEQEIDFFGE 407 (448)
Q Consensus 339 ~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~-l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~ 407 (448)
.. ++.+.++|+.+ .+.+..+.... ....+.|+|+|++ +++.. .++.|.|+|+.+++.+.++... ..
T Consensus 282 ~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg-~~ 358 (368)
T 1mda_H 282 TVEHSRSCLAAAENTSSVTASV-GQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD-KG 358 (368)
T ss_dssp EEECSSCTTSCEEEEEEEESSS-CCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC-SC
T ss_pred eccccCcccccCCCEEEEECCC-CeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC-CC
Confidence 43 23567999987 66666665443 5788999999984 55555 5899999999999888776543 45
Q ss_pred eEEEEEcc
Q 013184 408 ISGMTFSP 415 (448)
Q Consensus 408 v~~~~fsp 415 (448)
..++++.+
T Consensus 359 P~~i~~~~ 366 (368)
T 1mda_H 359 PESLSVQN 366 (368)
T ss_dssp CCEEECCC
T ss_pred CCEEEeec
Confidence 66777765
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.90 E-value=2.3e-07 Score=92.60 Aligned_cols=175 Identities=11% Similarity=0.006 Sum_probs=124.2
Q ss_pred CCCeeEEEEeCCCcEEEEecCCceEEEEee--cCCCeeEEEE-C-CCCCEEEEEe------------------cCCcEEE
Q 013184 247 SGGIHFMASNNDCGVRDFDMERFQLSKHFS--FPWPVNHTSL-S-PDGKLLVIVG------------------DNPEGIL 304 (448)
Q Consensus 247 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~-s-p~~~~l~~~~------------------~d~~i~i 304 (448)
+|+.++++...+..|.+.|+.+.++.+.+. ....+..+++ + |+++++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 566566666667789999999999888555 4456788888 5 9999998885 2457899
Q ss_pred EECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCC--------------------------------------cEEE
Q 013184 305 VDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDK--------------------------------------TCRV 346 (448)
Q Consensus 305 ~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~--------------------------------------~i~i 346 (448)
+|..+.+.+.++.--. ....++.+|+|+++++.+.+. .|.+
T Consensus 180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 9999998888776322 234578999999998888553 3666
Q ss_pred EEccC--CCcceEEEccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCce-----------eeeeecCcCceEEEE
Q 013184 347 WDVRN--LSKSVAVLKGNLGAIRSIRFTSDGNFMAMAE-PADFVHVYDAKNGFE-----------KEQEIDFFGEISGMT 412 (448)
Q Consensus 347 wd~~~--~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~-~d~~v~vwd~~~~~~-----------~~~~~~~~~~v~~~~ 412 (448)
.|.++ ....+..+.... ...++.++|||+++++++ .++.|.++|+.+.+. +.....-......++
T Consensus 259 ID~~~~~~~~~~~~Ipvg~-~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a 337 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA 337 (595)
T ss_dssp EECSGGGCCSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred EeCcccCCceeEEEEecCC-CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence 66654 112134444322 346799999999887775 567999999986531 212223345688999
Q ss_pred EccCCCeEEEEE
Q 013184 413 FSPDTEALFIGV 424 (448)
Q Consensus 413 fspdg~~L~~~~ 424 (448)
|+|+| .+++..
T Consensus 338 F~~dG-~aY~t~ 348 (595)
T 1fwx_A 338 FDGRG-NAYTSL 348 (595)
T ss_dssp ECTTS-EEEEEE
T ss_pred ECCCC-eEEEEE
Confidence 99999 776654
No 242
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.86 E-value=9.7e-07 Score=79.99 Aligned_cols=192 Identities=12% Similarity=0.047 Sum_probs=131.9
Q ss_pred EEEEe--cCCEEEEEeC--CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 195 STLAV--RDNLLIAGGF--QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 195 ~~l~~--~~~~lvsg~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
..|++ ++.++++.+. ++.|.+.|+.+.+......+ ........+.+ .++.+.++.-.++.+.++|..+++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l--~~~~fgeGi~~----~g~~lyv~t~~~~~v~viD~~t~~ 97 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM--DDSYFGEGLTL----LNEKLYQVVWLKNIGFIYDRRTLS 97 (266)
T ss_dssp EEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC--CTTCCEEEEEE----ETTEEEEEETTCSEEEEEETTTTE
T ss_pred ccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec--CCCcceEEEEE----eCCEEEEEEecCCEEEEEECCCCc
Confidence 45666 3444444443 57999999998875533332 22222223433 255566666678999999999999
Q ss_pred EEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCC-----CcEEEEEEcCCCCEEEEEeCCCcEE
Q 013184 271 LSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHL-----DFSFASAWHPDGRIFATGNQDKTCR 345 (448)
Q Consensus 271 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-----~~v~~~~~~p~g~~l~s~~~d~~i~ 345 (448)
.+..+... .-....++++|+.++++..++.|.++|..+.+.+..+.-.. ..++.+.|. +|..++....++.|.
T Consensus 98 v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~ 175 (266)
T 2iwa_A 98 NIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIA 175 (266)
T ss_dssp EEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEE
Confidence 99998754 11234466688888877778899999999998887766321 246778888 776555555678999
Q ss_pred EEEccCCCcceEEEccC-------------CCCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCC
Q 013184 346 VWDVRNLSKSVAVLKGN-------------LGAIRSIRFTSDGNFMAM-AEPADFVHVYDAKNG 395 (448)
Q Consensus 346 iwd~~~~~~~~~~~~~~-------------~~~v~~l~~sp~g~~l~s-~~~d~~v~vwd~~~~ 395 (448)
+.|..+ ++.+..+... ....+.++|+|+++.|++ +...+.|.+.++...
T Consensus 176 vID~~t-g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 176 RISAKD-GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEETTT-CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEECCC-CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 999987 7777776532 124589999999865555 446678888887653
No 243
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.81 E-value=1e-06 Score=79.03 Aligned_cols=181 Identities=9% Similarity=0.074 Sum_probs=126.1
Q ss_pred eEEEEe-cCCEEEEEeCCC--eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 194 VSTLAV-RDNLLIAGGFQG--ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 194 i~~l~~-~~~~lvsg~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
...|.+ ++.++++.+.+| .|+++|+.+.+......+ ........+.+ .+..+.++.-.++.+.++|..+++
T Consensus 45 tqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--~~~~FgeGit~----~g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIEL--GKRYFGEGISD----WKDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--CTTCCEEEEEE----ETTEEEEEESSSSEEEEEETTTCC
T ss_pred cceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEec--CCccceeEEEE----eCCEEEEEEeeCCEEEEEECccCc
Confidence 345555 666777777777 899999998876543333 22222223333 355566666678999999999999
Q ss_pred EEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecC--C---CcEEEEEEcCCCCEEEEEeCCCcEE
Q 013184 271 LSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGH--L---DFSFASAWHPDGRIFATGNQDKTCR 345 (448)
Q Consensus 271 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h--~---~~v~~~~~~p~g~~l~s~~~d~~i~ 345 (448)
.+..+.....-..++ ++++.|++...++.|.++|..+.+.+.++... . ..+..+.|. +|+.++..-.+..|.
T Consensus 119 ~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 119 QVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIV 195 (262)
T ss_dssp EEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEE
Confidence 999998544323333 56777777766788999999999988876542 1 335567776 777666665788999
Q ss_pred EEEccCCCcceEEEccC------------CCCeEEEEEcCCCCEEEEEeCC
Q 013184 346 VWDVRNLSKSVAVLKGN------------LGAIRSIRFTSDGNFMAMAEPA 384 (448)
Q Consensus 346 iwd~~~~~~~~~~~~~~------------~~~v~~l~~sp~g~~l~s~~~d 384 (448)
+.|.++ ++.+..+... ..-.+.|+|+|+++.|.+.+..
T Consensus 196 vIDp~t-G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 196 RIDPET-GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EECTTT-CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEECCC-CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 999987 7777666532 1246899999998887777654
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.80 E-value=1.4e-07 Score=88.58 Aligned_cols=250 Identities=12% Similarity=0.098 Sum_probs=154.0
Q ss_pred CCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-cCCEEEEEeCCCeEEEEEcCC
Q 013184 143 SKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-RDNLLIAGGFQGELICKYLDQ 220 (448)
Q Consensus 143 ~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-~~~~lvsg~~dg~i~vw~~~~ 220 (448)
..+.++++. ++.|..|+ .+++. +.... .....+.++.. .+..|..++.+ |..++. +
T Consensus 29 ~~g~l~v~t~~~~l~~~d-~~g~~--~~~~~----------------~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~ 86 (330)
T 3hxj_A 29 KNGTIYLGSSNKNLYAIN-TDGSV--KWFFK----------------SGEIIECRPSIGKDGTIYFGSDK--VYAINP-D 86 (330)
T ss_dssp TTSCEECSSTTTTTEEEC-TTSCE--EESSC----------------GGGEEEECCEETTTTEECCSSCE--EEEECC-C
T ss_pred cCCeEEEEcCCCEEEEEC-CCCcE--EEEEe----------------cCCCcccceEEecCCcEEEecCc--EEEECC-C
Confidence 455677765 56688888 55443 22111 11224566666 35666666655 777764 2
Q ss_pred CCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecC
Q 013184 221 PGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDN 299 (448)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d 299 (448)
........ ..........+. + + .+.+++.++.|..+|.. ++...... ....+.++...+++. +.+++.+
T Consensus 87 g~~~~~~~---~~~~~~~~~~~~---~-~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~ 156 (330)
T 3hxj_A 87 GTEKWRFD---TKKAIVSDFTIF---E-D-ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSND 156 (330)
T ss_dssp GGGGGGSC---C-----CCEEEE---T-T-EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTT
T ss_pred CcEEEEEE---CCCCcccCceEE---C-C-EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCC
Confidence 22111111 111112223331 3 3 57778888999999998 77766666 344456677777776 5567778
Q ss_pred CcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEE
Q 013184 300 PEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMA 379 (448)
Q Consensus 300 ~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 379 (448)
+.+..+|.. ++.+..+......+.++...++|.+++.. +.|..+| .+ +..+.........+.++...++|.. .
T Consensus 157 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~-g~~~~~~~~~~~~~~~~~~~~~g~l-~ 229 (330)
T 3hxj_A 157 NYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PD-GTEKWNFYAGYWTVTRPAISEDGTI-Y 229 (330)
T ss_dssp SEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TT-SCEEEEECCSSCCCSCCEECTTSCE-E
T ss_pred CEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CC-CcEEEEEccCCcceeceEECCCCeE-E
Confidence 899999998 88777766555666777887888755544 7799999 44 5555555555567888889888764 4
Q ss_pred EEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEEEe
Q 013184 380 MAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 380 s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~ 436 (448)
.++.++.|..+| .++............+.++.+.++| .|++++.+ +.+..+.
T Consensus 230 v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~---ggl~~~d 281 (330)
T 3hxj_A 230 VTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYD---GHLYAIN 281 (330)
T ss_dssp EEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTT---CEEEEEC
T ss_pred EEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCC---CCEEEEC
Confidence 566677888888 4566665555444445566666666 45666554 3444444
No 245
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.79 E-value=1.8e-05 Score=71.92 Aligned_cols=216 Identities=7% Similarity=-0.005 Sum_probs=130.7
Q ss_pred EEEEEeCCCeEEEEEcCCCCcee--EEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCC
Q 013184 203 LLIAGGFQGELICKYLDQPGVSF--CSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPW 279 (448)
Q Consensus 203 ~lvsg~~dg~i~vw~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~ 279 (448)
+|+.+.. +.|+.++++...... ...........+..+.+ ++.++.++++-...+.|..+++.+......+. ...
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~--d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAF--DCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEE--ETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEE--ecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 3444443 478888877654210 00011001112234444 77777677777778899999998765443333 225
Q ss_pred CeeEEEECCCCCEEEEE-ecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeC---CCcEEEEEccCCCcc
Q 013184 280 PVNHTSLSPDGKLLVIV-GDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ---DKTCRVWDVRNLSKS 355 (448)
Q Consensus 280 ~v~~~~~sp~~~~l~~~-~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~---d~~i~iwd~~~~~~~ 355 (448)
....++++|++..|+++ ...+.|.+++.........+.........++++|++..|+.+.. .+.|..+++.. ..
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg--~~ 157 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG--TN 157 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS--CC
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC--CC
Confidence 67899999976666555 45678999998644322222222356789999997665555544 36788888753 33
Q ss_pred eEEE-ccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEec
Q 013184 356 VAVL-KGNLGAIRSIRFTSDGNFMAMAE-PADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 356 ~~~~-~~~~~~v~~l~~sp~g~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D 426 (448)
...+ .........++++|++..|..+. ..+.|.+++....... .+........+++. ++..|+++.+.
T Consensus 158 ~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~~~~P~gi~~--d~~~lyva~~~ 227 (267)
T 1npe_A 158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-KVLEGLQYPFAVTS--YGKNLYYTDWK 227 (267)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-EEEECCCSEEEEEE--ETTEEEEEETT
T ss_pred cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE-EEecCCCCceEEEE--eCCEEEEEECC
Confidence 3333 23345678999999887776655 4579999998754332 33333345667765 46778887654
No 246
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.77 E-value=3.2e-07 Score=87.17 Aligned_cols=196 Identities=10% Similarity=0.027 Sum_probs=123.6
Q ss_pred eeEEEEe--cCCEEEEEeC-----CCeEEEEEcCCCCceeEEEeec---CCCCceeeEEEEeCCCCCeeEEEEe---CCC
Q 013184 193 QVSTLAV--RDNLLIAGGF-----QGELICKYLDQPGVSFCSRTTY---DENAITNAVEIYNSPSGGIHFMASN---NDC 259 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~-----dg~i~vw~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~s~s---~dg 259 (448)
.+..+++ +++++++... .+.|.+|++.+........+.. .+....+.+.+ ++.++..+++.. .++
T Consensus 68 ~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~v--d~~~g~~yvtd~~~~~~~ 145 (343)
T 2qe8_A 68 TVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAV--DLIHNFVYISDPAPDDKA 145 (343)
T ss_dssp CEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEE--ETTTTEEEEEECCSGGGC
T ss_pred EeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEE--ecCCCEEEEEcCccCCCC
Confidence 5778888 4555555443 5789999988765332222211 11123355555 666555666655 678
Q ss_pred cEEEEecCCceEEEEeec------------------------------CCCeeEEEECCCCCEEEEEecCC-cEEEEECC
Q 013184 260 GVRDFDMERFQLSKHFSF------------------------------PWPVNHTSLSPDGKLLVIVGDNP-EGILVDSQ 308 (448)
Q Consensus 260 ~v~iwd~~~~~~~~~~~~------------------------------~~~v~~~~~sp~~~~l~~~~~d~-~i~i~d~~ 308 (448)
.|.+||+.+++..+.+.. ...++.++|+|+++.|+++...+ .+..++..
T Consensus 146 ~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~ 225 (343)
T 2qe8_A 146 ALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSA 225 (343)
T ss_dssp EEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHH
T ss_pred eEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHH
Confidence 999999988876655421 02368899999999888887655 45444431
Q ss_pred ---CCc-----eeE--eeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEcc-CCCCeEEEEEcCCCCE
Q 013184 309 ---TGK-----AIM--PLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKG-NLGAIRSIRFTSDGNF 377 (448)
Q Consensus 309 ---~~~-----~~~--~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~l~~sp~g~~ 377 (448)
.+. ... ...++......++++++|+++++...++.|.+||... ++....... +...+.+++|.++|++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~-G~~~~~~~~~~~~~p~~va~~~~g~l 304 (343)
T 2qe8_A 226 DLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSAD-RAYKLLVTDEKLSWTDSFNFGSDGYL 304 (343)
T ss_dssp HHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTT-TEEEEEEECGGGSCEEEEEECTTSCE
T ss_pred HhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCC-CCEEEEEECCceecCCeeEECCCCcE
Confidence 111 000 1113334455789999999999988899999999833 333222222 2456889999999988
Q ss_pred EEEEeCCCeEEEEE
Q 013184 378 MAMAEPADFVHVYD 391 (448)
Q Consensus 378 l~s~~~d~~v~vwd 391 (448)
+++.+..+.+.+|.
T Consensus 305 ~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 305 YFDCNQLHHSAPLN 318 (343)
T ss_dssp EEEECCGGGSGGGB
T ss_pred EEEeCccccccccc
Confidence 88876555444443
No 247
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.76 E-value=1.9e-06 Score=77.23 Aligned_cols=179 Identities=11% Similarity=0.038 Sum_probs=126.3
Q ss_pred eEEEEe-cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEE
Q 013184 194 VSTLAV-RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLS 272 (448)
Q Consensus 194 i~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~ 272 (448)
...|.+ ++.++++.+.+|.|+++|+.+.+..... +. .......+.+ .+..++++.-.++.+.+||.++++.+
T Consensus 57 tqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~--~~~FgeGit~----~g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RL--GNIFAEGLAS----DGERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp EEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-EC--TTCCEEEEEE----CSSCEEEEESSSCEEEEEETTTTEEE
T ss_pred cceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CC--CCcceeEEEE----eCCEEEEEEccCCEEEEEECCcCcEE
Confidence 355666 5566777888899999999988865443 22 2222223433 34556666667899999999999999
Q ss_pred EEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCC-----CcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 013184 273 KHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHL-----DFSFASAWHPDGRIFATGNQDKTCRVW 347 (448)
Q Consensus 273 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-----~~v~~~~~~p~g~~l~s~~~d~~i~iw 347 (448)
..+.....-..++ ++++.|+++..++.|.++|..+.+.+.++.-.. ..++.+.|. +|+.++..-.+..|.+.
T Consensus 130 ~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI 206 (268)
T 3nok_A 130 RTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEI 206 (268)
T ss_dssp EEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred EEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence 9998554434444 568888888778899999999999888775321 345677887 77766665578899999
Q ss_pred EccCCCcceEEEccC-------------CCCeEEEEEcCCCCEEEEEeC
Q 013184 348 DVRNLSKSVAVLKGN-------------LGAIRSIRFTSDGNFMAMAEP 383 (448)
Q Consensus 348 d~~~~~~~~~~~~~~-------------~~~v~~l~~sp~g~~l~s~~~ 383 (448)
|.++ ++.+..+... ..-.+.|+|+|+++.|.+.+.
T Consensus 207 Dp~T-G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 207 DPAT-GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CTTT-CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred eCCC-CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9977 7776665432 135689999998766655544
No 248
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.71 E-value=1.1e-05 Score=71.67 Aligned_cols=181 Identities=13% Similarity=0.067 Sum_probs=125.4
Q ss_pred eEEEEe-cCCEEEEEeCCC--eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 194 VSTLAV-RDNLLIAGGFQG--ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 194 i~~l~~-~~~~lvsg~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
...|.+ ++.++++.+..| .|+..|+.+.+......+.. ...-..+.+ .+.++++..-.++.+.++|..+.+
T Consensus 23 tqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~--~~fgeGi~~----~~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 23 TEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPP--PYFGAGIVA----WRDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp EEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCT--TCCEEEEEE----ETTEEEEEESSSSEEEEEETTTTE
T ss_pred cccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCC--CcceeEEEE----eCCEEEEEEeeCCEEEEEECCcCc
Confidence 456777 445556666654 89999999887654333322 222223333 245566667778999999999999
Q ss_pred EEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCC-----CcEEEEEEcCCCCEEEEEeCCCcEE
Q 013184 271 LSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHL-----DFSFASAWHPDGRIFATGNQDKTCR 345 (448)
Q Consensus 271 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-----~~v~~~~~~p~g~~l~s~~~d~~i~ 345 (448)
.+..+..+..-..++ ++++.|+++..++.|.++|..+.+.+.++.-.. ..++.+.|. +|+.++..-.+..|.
T Consensus 97 ~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~ 173 (243)
T 3mbr_X 97 PRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIA 173 (243)
T ss_dssp EEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEE
T ss_pred EEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEE
Confidence 999999655444554 567777777778899999999999888776421 345667776 677666655678899
Q ss_pred EEEccCCCcceEEEccC-------------CCCeEEEEEcCCCCEEEEEeCC
Q 013184 346 VWDVRNLSKSVAVLKGN-------------LGAIRSIRFTSDGNFMAMAEPA 384 (448)
Q Consensus 346 iwd~~~~~~~~~~~~~~-------------~~~v~~l~~sp~g~~l~s~~~d 384 (448)
+.|.++ ++.+..+... ..-.+.|+++|+++.|.+.+..
T Consensus 174 vIDp~t-G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 174 RIDPAS-GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EECTTT-CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred EEECCC-CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 999987 7776665421 1356899999988777766643
No 249
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.71 E-value=1.3e-05 Score=81.51 Aligned_cols=269 Identities=11% Similarity=0.038 Sum_probs=157.6
Q ss_pred CCeEEEecC--CeEEEEec-CCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcCC
Q 013184 144 KHDVYLMSH--FSIVHWSS-LSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQ 220 (448)
Q Consensus 144 ~~~v~~~~~--~~v~~w~~-~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~ 220 (448)
...||+++. +.|.-+|. .+++..=.......... .+... ....-..+++.+..+++++.+|.|..+|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~v~v~~~dg~l~alD~~t 134 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDAST---KAVMC----CDVVDRGLAYGAGQIVKKQANGHLLALDAKT 134 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGG---GGGCT----TCSCCCCCEEETTEEEEECTTSEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccc---ccccc----ccccccccEEECCEEEEEeCCCEEEEEECCC
Confidence 456777654 56888887 77665544433321100 00000 0000112345677888899999999999988
Q ss_pred CCceeEEEeecCCC--CceeeEEEEeCCCCCeeEEEEeC------CCcEEEEecCCceEEEEeecCCCe-----------
Q 013184 221 PGVSFCSRTTYDEN--AITNAVEIYNSPSGGIHFMASNN------DCGVRDFDMERFQLSKHFSFPWPV----------- 281 (448)
Q Consensus 221 ~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~~v----------- 281 (448)
.+............ .+.....+ .+. .+++++. ++.|+.+|.++++.+..+....+.
T Consensus 135 G~~~W~~~~~~~~~~~~~~~~P~v----~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~ 209 (571)
T 2ad6_A 135 GKINWEVEVCDPKVGSTLTQAPFV----AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNS 209 (571)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEE----ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTT
T ss_pred CCEEEEecCCCCCccceeccCCEE----ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccc
Confidence 87654433322100 11111111 123 4455544 789999999999999887733221
Q ss_pred ----------------------------eEEEECCCCCEEEEEecC----------------CcEEEEECCCCceeEeee
Q 013184 282 ----------------------------NHTSLSPDGKLLVIVGDN----------------PEGILVDSQTGKAIMPLC 317 (448)
Q Consensus 282 ----------------------------~~~~~sp~~~~l~~~~~d----------------~~i~i~d~~~~~~~~~l~ 317 (448)
..+++.+....++++..+ +.|..+|..+|+.+..++
T Consensus 210 ~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~ 289 (571)
T 2ad6_A 210 ANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQ 289 (571)
T ss_dssp TCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEE
T ss_pred ccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEec
Confidence 135566766677776542 258999999999887765
Q ss_pred c--C--------CCcEEEEEEcCCCC---EEEEEeCCCcEEEEEccCCCcceEEEccCC-------------CCe-----
Q 013184 318 G--H--------LDFSFASAWHPDGR---IFATGNQDKTCRVWDVRNLSKSVAVLKGNL-------------GAI----- 366 (448)
Q Consensus 318 ~--h--------~~~v~~~~~~p~g~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-------------~~v----- 366 (448)
. | ..++. +...++|+ .++.++.+|.+.++|..+ ++.+....... .++
T Consensus 290 ~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~ 367 (571)
T 2ad6_A 290 KTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNREN-GNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEF 367 (571)
T ss_dssp SSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTT-CCEEEEEESSTTCCSEEEECTTTCSEEECGGG
T ss_pred CCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCC-CCEEeeecccCCccccccccccCCceeccccc
Confidence 3 2 12222 22224674 677888999999999876 55554433211 111
Q ss_pred ---------------------EEEEEcCCCCEEEEEe-------------------------------------CCCeEE
Q 013184 367 ---------------------RSIRFTSDGNFMAMAE-------------------------------------PADFVH 388 (448)
Q Consensus 367 ---------------------~~l~~sp~g~~l~s~~-------------------------------------~d~~v~ 388 (448)
..++++|++..|++.. .++.|.
T Consensus 368 ~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~ 447 (571)
T 2ad6_A 368 ATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIR 447 (571)
T ss_dssp CCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEE
T ss_pred CCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEE
Confidence 2467888877776653 347899
Q ss_pred EEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecC
Q 013184 389 VYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 389 vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
.||+.+++.+.+.... ..+.+..+...+..+++++.|+
T Consensus 448 a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg 485 (571)
T 2ad6_A 448 AFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDG 485 (571)
T ss_dssp EECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTS
T ss_pred EEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCC
Confidence 9999999887665432 2233333344456677776553
No 250
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.71 E-value=7.5e-05 Score=70.92 Aligned_cols=245 Identities=9% Similarity=-0.010 Sum_probs=148.4
Q ss_pred CCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cCCEEEEEeCCCeEEEEEcC
Q 013184 143 SKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RDNLLIAGGFQGELICKYLD 219 (448)
Q Consensus 143 ~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~~~lvsg~~dg~i~vw~~~ 219 (448)
....++++....|+..++.+.....++... .....+++ .+.++++-...+.|..++++
T Consensus 43 ~~~~ll~~~~~~I~~i~~~g~~~~~~~~~~-------------------~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~ 103 (349)
T 3v64_C 43 PEPVLLFANRIDIRQVLPHRSEYTLLLNNL-------------------ENAIALDFHHRRELVFWSDVTLDRILRANLN 103 (349)
T ss_dssp SCCEEEEECBSCEEEECTTSCCEEEEECSC-------------------SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCceeEeecccceEEEeCCCCeeEEeecCC-------------------CceEEEEEeccccEEEEEeccCCceEEEecC
Confidence 355677787788988887655444443211 12466776 34555666677889888887
Q ss_pred CCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEe-
Q 013184 220 QPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVG- 297 (448)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~- 297 (448)
...... +.......+..+.+ .+.++.++++-...+.|.+.++........+. .....+.+++.|.+..|+...
T Consensus 104 g~~~~~---~~~~~~~~p~glav--d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~ 178 (349)
T 3v64_C 104 GSNVEE---VVSTGLESPGGLAV--DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW 178 (349)
T ss_dssp SCSCEE---EECSSCSCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEEC
T ss_pred CCCceE---EEeCCCCCccEEEE--ecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEecc
Confidence 655322 11111122345555 56566566776677889999987654333333 335678999999666655554
Q ss_pred cC-CcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCC
Q 013184 298 DN-PEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATG-NQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG 375 (448)
Q Consensus 298 ~d-~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g 375 (448)
.. +.|..+++........+.........++++|++..|+.+ ...+.|..+++.. ......+.........+++. .+
T Consensus 179 ~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG-~~~~~~~~~~~~~P~giav~-~~ 256 (349)
T 3v64_C 179 GNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG-SHRKAVISQGLPHPFAITVF-ED 256 (349)
T ss_dssp SSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSSEEEEEEE-TT
T ss_pred CCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC-CceEEEEeCCCCCceEEEEE-CC
Confidence 34 678888876443322223334567899999876655555 4567799999863 33333344444556778883 44
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEE
Q 013184 376 NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTF 413 (448)
Q Consensus 376 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~f 413 (448)
...++-...+.|..++..+|.....+......+.++++
T Consensus 257 ~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 257 SLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 294 (349)
T ss_dssp EEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred EEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEE
Confidence 45555556778999987677665555443334455554
No 251
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.69 E-value=6e-05 Score=72.63 Aligned_cols=251 Identities=9% Similarity=-0.026 Sum_probs=153.8
Q ss_pred eeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cCCEEEEEeCCCeEE
Q 013184 138 LVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RDNLLIAGGFQGELI 214 (448)
Q Consensus 138 l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~~~lvsg~~dg~i~ 214 (448)
+........++++....|+..++.+.....++... .....+++ .+.++++-...+.|.
T Consensus 81 C~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~~~~-------------------~~~~gl~~d~~~~~ly~~D~~~~~I~ 141 (386)
T 3v65_B 81 CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNL-------------------ENAIALDFHHRRELVFWSDVTLDRIL 141 (386)
T ss_dssp EEECSSCCEEEEECBSCEEEECTTSCCCEEEECSC-------------------SCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred ECCccccceeEeecCccceeeccCCCcEEEEecCC-------------------CccEEEEEecCCCeEEEEeCCCCcEE
Confidence 33333455677777888999987665555444211 12466776 345566666778888
Q ss_pred EEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEE
Q 013184 215 CKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLL 293 (448)
Q Consensus 215 vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l 293 (448)
.++++...... +..........+.+ .+.++.++++-...+.|.+.++........+. .....+.+++.|.+..|
T Consensus 142 r~~~~g~~~~~---~~~~~~~~p~glav--d~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~l 216 (386)
T 3v65_B 142 RANLNGSNVEE---VVSTGLESPGGLAV--DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTI 216 (386)
T ss_dssp EEETTSCCEEE---EECSSCSCCCCEEE--ETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred EEecCCCCcEE---EEeCCCCCccEEEE--EeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeE
Confidence 88887654321 11111222345555 55566566776667889999887544333333 33567899999976666
Q ss_pred EEEe-cC-CcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEEccCCCcceEEEccCCCCeEEEE
Q 013184 294 VIVG-DN-PEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATG-NQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIR 370 (448)
Q Consensus 294 ~~~~-~d-~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 370 (448)
+.+. .. +.|..+++..................++|+|++..|+.+ ...+.|..+++.. ......+.........++
T Consensus 217 y~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~gia 295 (386)
T 3v65_B 217 YWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG-SHRKAVISQGLPHPFAIT 295 (386)
T ss_dssp EEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS-CSCEEEECSSCSSEEEEE
T ss_pred EEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC-CeeEEEEECCCCCceEEE
Confidence 6554 33 678888876543333333344567899999866655555 4567788888853 333333443445567888
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEc
Q 013184 371 FTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFS 414 (448)
Q Consensus 371 ~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fs 414 (448)
+. .+..+++....+.|..++..+|.....+......+.+|++.
T Consensus 296 v~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~ 338 (386)
T 3v65_B 296 VF-EDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTL 338 (386)
T ss_dssp EE-TTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEE
T ss_pred EE-CCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEEE
Confidence 83 44555555567889999977777666655444455566553
No 252
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.67 E-value=6.2e-05 Score=79.79 Aligned_cols=258 Identities=9% Similarity=0.001 Sum_probs=161.4
Q ss_pred CCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-cCCEEEEEeCCCeEEEEEcCC
Q 013184 142 TSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-RDNLLIAGGFQGELICKYLDQ 220 (448)
Q Consensus 142 ~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-~~~~lvsg~~dg~i~vw~~~~ 220 (448)
...+.++++..+.|.+|+..+.......... .. ...+....|.+|.. ....|..|+.++-|..++...
T Consensus 271 d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~--~~---------~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~ 339 (795)
T 4a2l_A 271 DSQNRLWIGTFNDLNIYHEGTDSFASYSSNP--VE---------NGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIR 339 (795)
T ss_dssp CTTSCEEEEESSCEEEEETTTTEEEEECCCT--TS---------TTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGG
T ss_pred cCCCCEEEEeCChhheEcCCCCeEEEEecCC--CC---------CCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCc
Confidence 4456677776667888887655433322111 00 11334456899988 445677788888888888765
Q ss_pred CCceeEEEeec--C-CCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee---------cCCCeeEEEECC
Q 013184 221 PGVSFCSRTTY--D-ENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS---------FPWPVNHTSLSP 288 (448)
Q Consensus 221 ~~~~~~~~~~~--~-~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---------~~~~v~~~~~sp 288 (448)
........... . ....+.+ ++..++|. |..|+.++.|..|+..+++...... ....|.++...+
T Consensus 340 ~~~~~~~~~~~~~~l~~~~V~~--i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~ 415 (795)
T 4a2l_A 340 NRFKNIRNIPYKNSLSDNVVSC--IVEDKDKN--LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE 415 (795)
T ss_dssp GSSEEECCCTTSSSCSCSSEEE--EEECTTSC--EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET
T ss_pred ccceEEcCCCCCCCCCCCeeEE--EEECCCCC--EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC
Confidence 44321111000 0 1222333 44466664 6678888889999988776544321 135688998888
Q ss_pred CCCEEEEEecCCcEEEEECCCCceeEeee----cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEcc---
Q 013184 289 DGKLLVIVGDNPEGILVDSQTGKAIMPLC----GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKG--- 361 (448)
Q Consensus 289 ~~~~l~~~~~d~~i~i~d~~~~~~~~~l~----~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--- 361 (448)
++++|.+|+.++.+.++|..+++...... .....|.++...++|++.+.. ..| +.+|+..+ + ....+..
T Consensus 416 ~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~-~-~~~~~~~~~~ 491 (795)
T 4a2l_A 416 KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQ-R-SFTTIEKEKD 491 (795)
T ss_dssp TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTT-T-EEEECCBCTT
T ss_pred CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCC-C-eEEEcccccc
Confidence 88867778877789999998876543221 134679999999888855544 444 88899764 3 2222221
Q ss_pred ----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeee-------cCcCceEEEEEccCCCeEEE
Q 013184 362 ----NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEI-------DFFGEISGMTFSPDTEALFI 422 (448)
Q Consensus 362 ----~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~-------~~~~~v~~~~fspdg~~L~~ 422 (448)
....|.++...++|++.+.. .. -|..||..++.. .+. .....|.++...++|...+.
T Consensus 492 ~~~~~~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWig 559 (795)
T 4a2l_A 492 GTPVVSKQITTLFRDSHKRLWIGG-EE-GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVG 559 (795)
T ss_dssp CCBCCCCCEEEEEECTTCCEEEEE-SS-CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEE
T ss_pred ccccCCceEEEEEECCCCCEEEEe-CC-ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEE
Confidence 23578999999999866554 44 488899776654 221 12346899999998885543
No 253
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.67 E-value=2.5e-05 Score=72.70 Aligned_cols=222 Identities=13% Similarity=0.071 Sum_probs=133.2
Q ss_pred eEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEe-CCC-cEEEEecCCc
Q 013184 194 VSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASN-NDC-GVRDFDMERF 269 (448)
Q Consensus 194 i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s-~dg-~v~iwd~~~~ 269 (448)
...+++ +++++++-...+.|..++.... .. .... ....+..+.+ .++|. ++++.. .++ .|..++..++
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~--~~~~--~~~~p~gia~--~~dG~-l~vad~~~~~~~v~~~d~~~g 105 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPDGN-QQ--IHAT--VEGKVSGLAF--TSNGD-LVATGWNADSIPVVSLVKSDG 105 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCC-EE--EEEE--CSSEEEEEEE--CTTSC-EEEEEECTTSCEEEEEECTTS
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCCCc-eE--EEEe--CCCCceeEEE--cCCCc-EEEEeccCCcceEEEEcCCCC
Confidence 345566 6777777778899888886542 21 1111 1234455555 78886 444433 333 4777787777
Q ss_pred eEEEEeec--CCCeeEEEECCCCCEEEEEecCCcEEEEECCCCce-eEee---------ecCCCcEEEEEEcCCCCEEEE
Q 013184 270 QLSKHFSF--PWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKA-IMPL---------CGHLDFSFASAWHPDGRIFAT 337 (448)
Q Consensus 270 ~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~-~~~l---------~~h~~~v~~~~~~p~g~~l~s 337 (448)
+....... ......++..+.+..+++-...+.|..+|..+++. +... .........+ +|+++.|+.
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 106 TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYV 183 (306)
T ss_dssp CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEE
T ss_pred eEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEE
Confidence 76544432 22345566555554444444578899999876532 2111 0112234555 788876655
Q ss_pred Ee-CCCcEEEEEccCCCc--ceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee--eeecCcCceEEEE
Q 013184 338 GN-QDKTCRVWDVRNLSK--SVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKE--QEIDFFGEISGMT 412 (448)
Q Consensus 338 ~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~--~~~~~~~~v~~~~ 412 (448)
+. ..+.|..+++...+. ....+.. ......++++++|++.++....+.|.+++.. ++... .+......+++++
T Consensus 184 ~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a 261 (306)
T 2p4o_A 184 SNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVA 261 (306)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEE
T ss_pred EeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEE
Confidence 54 567899999863121 1122211 1345678999999887776667889999964 55432 2222235689999
Q ss_pred Ec---cCCCeEEEEEecC
Q 013184 413 FS---PDTEALFIGVWDR 427 (448)
Q Consensus 413 fs---pdg~~L~~~~~D~ 427 (448)
|. |+++.|+++...+
T Consensus 262 ~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 262 FGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ECCSTTTTTEEEEEECTT
T ss_pred EecccCCCCEEEEECCCC
Confidence 99 8999999887653
No 254
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.65 E-value=8.9e-06 Score=84.38 Aligned_cols=262 Identities=16% Similarity=0.134 Sum_probs=156.0
Q ss_pred CCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeC------CCeEEEE
Q 013184 144 KHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGF------QGELICK 216 (448)
Q Consensus 144 ~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~------dg~i~vw 216 (448)
...||+.+ ++.|..+|..+++..-......+... ......++ +.+..++++.. +|.|..+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~---------~~~~~~P~----v~~~~v~vg~~~~~~~~~g~v~a~ 183 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKP---------YSITGAPR----VVKGKVIIGNGGAEYGVRGFVSAY 183 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSS---------CBCCSCCE----EETTEEEECCBCTTTCCBCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCc---------ceecCCCE----EECCEEEEeCCCCCcCCCCEEEEE
Confidence 45677765 77899999988776655544311100 00001111 22445555543 5899999
Q ss_pred EcCCCCceeEEEeecCCCC----------------------------ceeeEEEEeCCCCCeeEEEEeCCC---------
Q 013184 217 YLDQPGVSFCSRTTYDENA----------------------------ITNAVEIYNSPSGGIHFMASNNDC--------- 259 (448)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~----------------------------~~~~v~~~~~~~~~~~l~s~s~dg--------- 259 (448)
|..+.+............. ....+.+ .+..+ +++.++.++
T Consensus 184 D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~--d~~~~-~vy~~~~~g~~w~~~~~~ 260 (668)
T 1kv9_A 184 DADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAY--DPELD-LLYVGTGNGSPWNREVRS 260 (668)
T ss_dssp ETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEE--ETTTT-EEEEECCCEESSCHHHHS
T ss_pred ECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEE--cCCCC-EEEEeCCCCCccccCCCC
Confidence 9988876544432111100 0012222 55555 566666555
Q ss_pred ----------cEEEEecCCceEEEEeecC----------CCeeEEEECCCCC---EEEEEecCCcEEEEECCCCceeEee
Q 013184 260 ----------GVRDFDMERFQLSKHFSFP----------WPVNHTSLSPDGK---LLVIVGDNPEGILVDSQTGKAIMPL 316 (448)
Q Consensus 260 ----------~v~iwd~~~~~~~~~~~~~----------~~v~~~~~sp~~~---~l~~~~~d~~i~i~d~~~~~~~~~l 316 (448)
.|..+|..+++.+..++.. .++....+..+|+ .+++++.+|.++++|..+|+.+...
T Consensus 261 ~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 261 PGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (668)
T ss_dssp TTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence 4999999999999888731 2232233333565 6888899999999999999987443
Q ss_pred ecCC------------CcE------------------------EEEEEcCCCCEEEEEe---------------------
Q 013184 317 CGHL------------DFS------------------------FASAWHPDGRIFATGN--------------------- 339 (448)
Q Consensus 317 ~~h~------------~~v------------------------~~~~~~p~g~~l~s~~--------------------- 339 (448)
.... .++ ..++++|+..+++...
T Consensus 341 ~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~ 420 (668)
T 1kv9_A 341 KFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFN 420 (668)
T ss_dssp ESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCC
T ss_pred cccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccc
Confidence 2211 000 0257778766655421
Q ss_pred ---------------CCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecC
Q 013184 340 ---------------QDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDF 404 (448)
Q Consensus 340 ---------------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~ 404 (448)
.+|.|..||+.+ ++.+-....+ .++....+...|.+|++++.++.|++||..+|+.+..+...
T Consensus 421 ~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 421 TAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp CSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 237799999976 6665554433 23333344556788999999999999999999988776543
Q ss_pred cCce-EEEEEccCCC-eEEEE
Q 013184 405 FGEI-SGMTFSPDTE-ALFIG 423 (448)
Q Consensus 405 ~~~v-~~~~fspdg~-~L~~~ 423 (448)
.+.. .-+.+..+|+ +++++
T Consensus 499 ~~~~~~p~~~~~~G~~yva~~ 519 (668)
T 1kv9_A 499 SGIVAAPMTFELAGRQYVAIM 519 (668)
T ss_dssp SCCCSCCEEEEETTEEEEEEE
T ss_pred CCcccCceEEEECCEEEEEEE
Confidence 3211 2344556776 44433
No 255
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.64 E-value=1.7e-05 Score=82.31 Aligned_cols=270 Identities=16% Similarity=0.129 Sum_probs=161.7
Q ss_pred CCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcCCCC
Q 013184 144 KHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQPG 222 (448)
Q Consensus 144 ~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~ 222 (448)
...||+++ ++.|.-+|..+++..=..+......... ... ....-..+++.+..+++++.+|.|..+|..+.+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~ 138 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKAR-TSC------CDAVNRGVALWGDKVYVGTLDGRLIALDAKTGK 138 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGG-GCT------TCSCCCCCEEEBTEEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccc-ccc------ccCCccceEEECCEEEEEcCCCEEEEEECCCCC
Confidence 45677664 5678888887766554443321110000 000 000012234457788889999999999998887
Q ss_pred ceeEEEeecCC--CCceeeEEEEeCCCCCeeEEEEeC------CCcEEEEecCCceEEEEeec-C-CC------------
Q 013184 223 VSFCSRTTYDE--NAITNAVEIYNSPSGGIHFMASNN------DCGVRDFDMERFQLSKHFSF-P-WP------------ 280 (448)
Q Consensus 223 ~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~-~-~~------------ 280 (448)
........... ..+.....+ .+. .+++++. +|.|+.+|.++++++..+.. + .+
T Consensus 139 ~~W~~~~~~~~~~~~~~~~P~v----~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~ 213 (668)
T 1kv9_A 139 AIWSQQTTDPAKPYSITGAPRV----VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREA 213 (668)
T ss_dssp EEEEEECSCTTSSCBCCSCCEE----ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHH
T ss_pred EeeeeccCCCCCcceecCCCEE----ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccc
Confidence 65443332110 011111111 123 3444432 58999999999999988762 1 11
Q ss_pred ------------------eeEEEECCCCCEEEEEecCC-------------------cEEEEECCCCceeEeeec--CC-
Q 013184 281 ------------------VNHTSLSPDGKLLVIVGDNP-------------------EGILVDSQTGKAIMPLCG--HL- 320 (448)
Q Consensus 281 ------------------v~~~~~sp~~~~l~~~~~d~-------------------~i~i~d~~~~~~~~~l~~--h~- 320 (448)
...+++.|...+++++..++ .|..+|..+|+.+..++. |.
T Consensus 214 ~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~ 293 (668)
T 1kv9_A 214 AKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDS 293 (668)
T ss_dssp HTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCC
T ss_pred cccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcc
Confidence 12467888888888887765 399999999999877764 22
Q ss_pred ------CcEEEEEEcCCCC---EEEEEeCCCcEEEEEccCCCcceEEEccCC------------CC--------------
Q 013184 321 ------DFSFASAWHPDGR---IFATGNQDKTCRVWDVRNLSKSVAVLKGNL------------GA-------------- 365 (448)
Q Consensus 321 ------~~v~~~~~~p~g~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------------~~-------------- 365 (448)
.+.....+..+|+ .++.++.+|.+.++|..+ ++.+....... .+
T Consensus 294 wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~ 372 (668)
T 1kv9_A 294 WDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN-GKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIV 372 (668)
T ss_dssp SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEE
T ss_pred ccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCC-CCEeccccccccccccccccccCCccccccccccCCeeE
Confidence 2222223333665 688999999999999977 66553322111 00
Q ss_pred ----------eEEEEEcCCCCEEEEEe------------------------------------CCCeEEEEECCCCceee
Q 013184 366 ----------IRSIRFTSDGNFMAMAE------------------------------------PADFVHVYDAKNGFEKE 399 (448)
Q Consensus 366 ----------v~~l~~sp~g~~l~s~~------------------------------------~d~~v~vwd~~~~~~~~ 399 (448)
-..++++|+...+.+.. .+|.|..||+.+++.+.
T Consensus 373 ~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W 452 (668)
T 1kv9_A 373 MWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAW 452 (668)
T ss_dssp ESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEE
T ss_pred ECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEE
Confidence 01267888766655421 23789999999998876
Q ss_pred eeecCcCceEEEEEccCCCeEEEEEecC
Q 013184 400 QEIDFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 400 ~~~~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
+.... ..+.+..+...|..+++++.|+
T Consensus 453 ~~~~~-~~~~~~~~~t~gg~vf~g~~dg 479 (668)
T 1kv9_A 453 KVPYP-THWNGGTLSTAGNLVFQGTAAG 479 (668)
T ss_dssp EEEES-SSCCCCEEEETTTEEEEECTTS
T ss_pred EccCC-CCCcCceeEeCCCEEEEECCcc
Confidence 65533 3344445566778888886554
No 256
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.63 E-value=2e-05 Score=80.12 Aligned_cols=265 Identities=16% Similarity=0.112 Sum_probs=153.4
Q ss_pred CCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeC------CCeEEEE
Q 013184 144 KHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGF------QGELICK 216 (448)
Q Consensus 144 ~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~------dg~i~vw 216 (448)
...||+.. ++.+..+|..+++..-...+.++... ......+ .+.+..+++++. +|.|..+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~---------~~~~~~P----~v~~g~v~vg~~~~~~~~~g~v~a~ 181 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVG---------STLTQAP----FVAKDTVLMGCSGAELGVRGAVNAF 181 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGT---------CBCCSCC----EEETTEEEEECBCGGGTCCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCcc---------ceeccCC----EEECCEEEEEecCCccCCCCEEEEE
Confidence 55677764 67799999888776655554432100 0000011 122445555554 7999999
Q ss_pred EcCCCCceeEEEeecCC----------------------------------CCce-eeEEEEeCCCCCeeEEEEeC----
Q 013184 217 YLDQPGVSFCSRTTYDE----------------------------------NAIT-NAVEIYNSPSGGIHFMASNN---- 257 (448)
Q Consensus 217 ~~~~~~~~~~~~~~~~~----------------------------------~~~~-~~v~~~~~~~~~~~l~s~s~---- 257 (448)
|..+.+........... .+.+ ..+.+ .+... .++.++.
T Consensus 182 D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~--d~~~g-~vy~~~g~~~~ 258 (571)
T 2ad6_A 182 DLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAY--DPKLN-LFYYGSGNPAP 258 (571)
T ss_dssp ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEE--ETTTT-EEEEECCCCSC
T ss_pred ECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEE--cCCCC-eEEEECCCCcc
Confidence 99887755433322110 0000 01222 34444 3333332
Q ss_pred --------C----CcEEEEecCCceEEEEeecC-C------Cee---EEEECCCCC---EEEEEecCCcEEEEECCCCce
Q 013184 258 --------D----CGVRDFDMERFQLSKHFSFP-W------PVN---HTSLSPDGK---LLVIVGDNPEGILVDSQTGKA 312 (448)
Q Consensus 258 --------d----g~v~iwd~~~~~~~~~~~~~-~------~v~---~~~~sp~~~---~l~~~~~d~~i~i~d~~~~~~ 312 (448)
+ +.|..+|..+++.+..++.. . .+. -+...++|+ .+++++.+|.+.++|..+|+.
T Consensus 259 ~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 338 (571)
T 2ad6_A 259 WNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL 338 (571)
T ss_dssp SCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred ccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCE
Confidence 1 35999999999999888721 0 111 122224674 567788899999999999998
Q ss_pred eEeeecCC-------------CcE--------------------------EEEEEcCCCCEEEEEe--------------
Q 013184 313 IMPLCGHL-------------DFS--------------------------FASAWHPDGRIFATGN-------------- 339 (448)
Q Consensus 313 ~~~l~~h~-------------~~v--------------------------~~~~~~p~g~~l~s~~-------------- 339 (448)
+....... .++ ..++++|+..+|++..
T Consensus 339 ~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~ 418 (571)
T 2ad6_A 339 IVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPY 418 (571)
T ss_dssp EEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCC
T ss_pred EeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccccccccc
Confidence 77654221 111 1357888777766653
Q ss_pred -----------------------CCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 013184 340 -----------------------QDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGF 396 (448)
Q Consensus 340 -----------------------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~ 396 (448)
.++.|..||+.+ ++.+-.+... .++....+...+..+++++.++.|+.||.++|+
T Consensus 419 ~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t-G~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 419 RAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT-GKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp CTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT-CCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccCCccccccceeccCccccCCCCCCeEEEEECCC-CCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 246788999876 5555544422 222222233346677789999999999999999
Q ss_pred eeeeeecCcCc-eEEEEEccCCCeEEEEEecC
Q 013184 397 EKEQEIDFFGE-ISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 397 ~~~~~~~~~~~-v~~~~fspdg~~L~~~~~D~ 427 (448)
.+.++...... -.-+.+..+|+.+ +++.++
T Consensus 497 ~lw~~~~~~~~~~~p~~~~~~G~~y-v~~~~G 527 (571)
T 2ad6_A 497 ELWNFKMPSGGIGSPMTYSFKGKQY-IGSMYG 527 (571)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEE-EEEEEC
T ss_pred EEEEEeCCCCcEeeeEEEEECCEEE-EEEECC
Confidence 88776543221 1224466787644 344443
No 257
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.58 E-value=0.00048 Score=64.30 Aligned_cols=241 Identities=8% Similarity=-0.006 Sum_probs=143.2
Q ss_pred eEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--c-CCEEEEEeCCCeEEEEEcCCCC
Q 013184 146 DVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--R-DNLLIAGGFQGELICKYLDQPG 222 (448)
Q Consensus 146 ~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~-~~~lvsg~~dg~i~vw~~~~~~ 222 (448)
.++++....|+..++.+.....++... ....++++ . +.++++-...+.|..++++...
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~~~-------------------~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~ 63 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIPNL-------------------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 63 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEECSC-------------------SSEEEEEEETTTTEEEEEETTTTEEEEEEC----
T ss_pred EEEEECCCeEEEEECCCcceEehhcCC-------------------CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCC
Confidence 367777778999998776655544211 12466777 2 3455666667899998887521
Q ss_pred --ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecC
Q 013184 223 --VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDN 299 (448)
Q Consensus 223 --~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d 299 (448)
... ..+.......+..+.+ .+.++.++++-...+.|.++++........+. .......+++.|.+..|+.+...
T Consensus 64 ~~~~~-~~~~~~~~~~p~glav--d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~ 140 (316)
T 1ijq_A 64 GVSSY-DTVISRDIQAPDGLAV--DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG 140 (316)
T ss_dssp ----C-EEEECSSCSCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS
T ss_pred CCccc-EEEEeCCCCCcCEEEE--eecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC
Confidence 011 1111111122345555 55555566666678899999987654444443 33567899999976666655532
Q ss_pred --CcEEEEECCCCceeEee-ecCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEEccCCCcceEEE-c--cCCCCeEEEEEc
Q 013184 300 --PEGILVDSQTGKAIMPL-CGHLDFSFASAWHPDGRIFATGN-QDKTCRVWDVRNLSKSVAVL-K--GNLGAIRSIRFT 372 (448)
Q Consensus 300 --~~i~i~d~~~~~~~~~l-~~h~~~v~~~~~~p~g~~l~s~~-~d~~i~iwd~~~~~~~~~~~-~--~~~~~v~~l~~s 372 (448)
+.|..+++.. .....+ .........++++|++..|+.+. ..+.|..+|+.. .....+ . ........+++.
T Consensus 141 ~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg--~~~~~~~~~~~~~~~P~giav~ 217 (316)
T 1ijq_A 141 TPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDEKRLAHPFSLAVF 217 (316)
T ss_dssp SSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEECTTTTSSEEEEEEE
T ss_pred CCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC--CceEEEeecCCccCCcEEEEEE
Confidence 6788888753 333333 23345678999999776665554 556899999863 222333 2 123445678875
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEE
Q 013184 373 SDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMT 412 (448)
Q Consensus 373 p~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~ 412 (448)
.+...++....+.|..++..+++....+......+.+|+
T Consensus 218 -~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~~~~~p~~i~ 256 (316)
T 1ijq_A 218 -EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 256 (316)
T ss_dssp -TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEE
T ss_pred -CCEEEEEECCCCeEEEEeCCCCcceEEEecCCCCceEEE
Confidence 355555555678999999877776555543323344444
No 258
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.57 E-value=3.8e-05 Score=71.88 Aligned_cols=230 Identities=12% Similarity=-0.015 Sum_probs=135.5
Q ss_pred EEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecC-----------------CCCceeeEEEEeCCCCCeeEEEEe
Q 013184 196 TLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYD-----------------ENAITNAVEIYNSPSGGIHFMASN 256 (448)
Q Consensus 196 ~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~~~~~~~l~s~s 256 (448)
++++ ++++++++..++.|..|+......... ..... ....+..+.+ .+.++ .|+++.
T Consensus 23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~--~~~~g-~l~v~d 98 (322)
T 2fp8_A 23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDF-AYASPYWNKAFCENSTDAEKRPLCGRTYDISY--NLQNN-QLYIVD 98 (322)
T ss_dssp CEECCTTCSSEEEECTTSEEEEECCTTTCEEEE-EESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE--ETTTT-EEEEEE
T ss_pred EEEEcCCCCEEEEEcCCCeEEEECCCCCceEEE-ecccccccccccccccchhccccCCCCceEEE--cCCCC-cEEEEE
Confidence 4444 667788888899999998765443211 11000 0012344444 65333 355554
Q ss_pred CCCcEEEEecCCceEEEEee-----cCCCeeEEEECC-CCCEEEEEec-----------------CCcEEEEECCCCcee
Q 013184 257 NDCGVRDFDMERFQLSKHFS-----FPWPVNHTSLSP-DGKLLVIVGD-----------------NPEGILVDSQTGKAI 313 (448)
Q Consensus 257 ~dg~v~iwd~~~~~~~~~~~-----~~~~v~~~~~sp-~~~~l~~~~~-----------------d~~i~i~d~~~~~~~ 313 (448)
..+.|..+|..+++...... .....+.+++.| +|++.++-.. .+.|..+|..+++..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 45568889987664322211 113478899999 9987666432 367888998777643
Q ss_pred EeeecCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEEccCCC-cceEEEccCCCCeEEEEEcCCCCEEEEEeC--------
Q 013184 314 MPLCGHLDFSFASAWHPDGRIFATG-NQDKTCRVWDVRNLS-KSVAVLKGNLGAIRSIRFTSDGNFMAMAEP-------- 383 (448)
Q Consensus 314 ~~l~~h~~~v~~~~~~p~g~~l~s~-~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~-------- 383 (448)
..... ......++|+|+|+.|+.+ ...+.|.+|++.... .....+....+ ...+++.++|++.++...
T Consensus 179 ~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~ 256 (322)
T 2fp8_A 179 LLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHG 256 (322)
T ss_dssp EEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTS
T ss_pred EeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccC
Confidence 32221 2334578999999866655 456789999986411 11222221223 688999999987666544
Q ss_pred --CCeEEEEECCCCceeeeeecC----cCceEEEEEccCCCeEEEEEecCCcceEEEEe
Q 013184 384 --ADFVHVYDAKNGFEKEQEIDF----FGEISGMTFSPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 384 --d~~v~vwd~~~~~~~~~~~~~----~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~ 436 (448)
.+.|..+|. .++.+..+... ...++++++ .++ .|++++... ..+..+.
T Consensus 257 ~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g-~L~v~~~~~--~~i~~~~ 310 (322)
T 2fp8_A 257 RVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDG-LLYIGTLFH--GSVGILV 310 (322)
T ss_dssp CEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETT-EEEEECSSC--SEEEEEE
T ss_pred CCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCC-EEEEeecCC--CceEEEe
Confidence 467888985 46666555433 245777877 344 566665432 3444444
No 259
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.54 E-value=0.00028 Score=74.68 Aligned_cols=256 Identities=11% Similarity=0.048 Sum_probs=157.2
Q ss_pred CCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-cCCEEEEEeCCCeEEEEEcCC
Q 013184 143 SKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-RDNLLIAGGFQGELICKYLDQ 220 (448)
Q Consensus 143 ~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-~~~~lvsg~~dg~i~vw~~~~ 220 (448)
..+.++++. +..+..|+..++........ +.. ...+....|.++.. ....|..|+.. -|.+++..+
T Consensus 224 ~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~--~~~---------~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~ 291 (795)
T 4a2l_A 224 SPTRIWVATEGAGLFLINPKTKEIKNYLHS--PSN---------PKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGT 291 (795)
T ss_dssp ETTEEEEEEBSSCEEEEETTTTEEEEECCC--TTC---------TTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTT
T ss_pred CCCCEEEEECCCCeEEEeCCCCeEEEeecC--CCC---------ccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCC
Confidence 345566665 44688888655443332211 000 01233456889888 34556666666 477888665
Q ss_pred CCceeEEEeecC-------CCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-------cCCCeeEEEE
Q 013184 221 PGVSFCSRTTYD-------ENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-------FPWPVNHTSL 286 (448)
Q Consensus 221 ~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-------~~~~v~~~~~ 286 (448)
.... ..... ....+. +++..++|. |..|+.++.|..++..+.+...... ....|.++..
T Consensus 292 ~~~~---~~~~~~~~~~~l~~~~i~--~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~ 364 (795)
T 4a2l_A 292 DSFA---SYSSNPVENGSLSQRSVR--SIFMDSQGG--MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVE 364 (795)
T ss_dssp TEEE---EECCCTTSTTSCSSSCEE--EEEECTTSC--EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEE
T ss_pred CeEE---EEecCCCCCCCCCCCcEE--EEEEeCCcC--EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEE
Confidence 4321 11111 112233 344477774 6778888889999987654332211 2345889998
Q ss_pred CCCCCEEEEEecCCcEEEEECCCCceeEeeec--------CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEE
Q 013184 287 SPDGKLLVIVGDNPEGILVDSQTGKAIMPLCG--------HLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAV 358 (448)
Q Consensus 287 sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~--------h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~ 358 (448)
.++|.+ .+|+.++-+..|+..+++....... ....|.++...++|+.|..|+.++-|.+||..+ ++ +..
T Consensus 365 d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~~-~~~ 441 (795)
T 4a2l_A 365 DKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS-GQ-VEN 441 (795)
T ss_dssp CTTSCE-EEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT-CC-EEE
T ss_pred CCCCCE-EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC-Cc-EEE
Confidence 888764 4577777799999887765432211 235789999988998677777777799999864 33 333
Q ss_pred Ec-----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeec------CcCceEEEEEccCCCeEEE
Q 013184 359 LK-----GNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEID------FFGEISGMTFSPDTEALFI 422 (448)
Q Consensus 359 ~~-----~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~------~~~~v~~~~fspdg~~L~~ 422 (448)
+. .....|.++...++|++.+.. ..| |.+||..++........ ....|.++...++|...+.
T Consensus 442 ~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 514 (795)
T 4a2l_A 442 FNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG 514 (795)
T ss_dssp ECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE
T ss_pred eecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEE
Confidence 32 124578999999888865544 444 88999877644322111 2356899999988875543
No 260
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.51 E-value=1.2e-05 Score=84.64 Aligned_cols=190 Identities=9% Similarity=0.041 Sum_probs=111.4
Q ss_pred EEeC-CCCCeeEEEEeCCC----cEEEEecCCc-eEEE-EeecCCCeeEEEECCCCCEEEEEecC-----CcEEEEECCC
Q 013184 242 IYNS-PSGGIHFMASNNDC----GVRDFDMERF-QLSK-HFSFPWPVNHTSLSPDGKLLVIVGDN-----PEGILVDSQT 309 (448)
Q Consensus 242 ~~~~-~~~~~~l~s~s~dg----~v~iwd~~~~-~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~i~d~~~ 309 (448)
+.++ |+|+.++++.+.+| .|+++|+.++ +.+. .+. .....++|+|+|+.|+....+ ..|.++++.+
T Consensus 179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt 256 (751)
T 2xe4_A 179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGK 256 (751)
T ss_dssp EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTS
T ss_pred eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCC
Confidence 3459 99986665655444 4999999988 6321 111 123578899999988877764 2688888887
Q ss_pred Cce--eEeee-cCCCcEEEEEEcCCCCEEEEEeC---CCcEEEEEccCCCcce--EEEc-cCCCCeEEEEEcCCCCEEE-
Q 013184 310 GKA--IMPLC-GHLDFSFASAWHPDGRIFATGNQ---DKTCRVWDVRNLSKSV--AVLK-GNLGAIRSIRFTSDGNFMA- 379 (448)
Q Consensus 310 ~~~--~~~l~-~h~~~v~~~~~~p~g~~l~s~~~---d~~i~iwd~~~~~~~~--~~~~-~~~~~v~~l~~sp~g~~l~- 379 (448)
++. ...+. ........+.|+|||++|+..+. ...|.++|+....... ..+. ...+...++.|+. |+.|+
T Consensus 257 ~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~ 335 (751)
T 2xe4_A 257 LQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVI 335 (751)
T ss_dssp CGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEE
T ss_pred CchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEE
Confidence 652 22232 23345678899999998876653 3457888886532222 3343 3344556666554 55444
Q ss_pred EEeCC----CeEEEEECCCCceeee-eecCcC--ceEEEEEccCCCeEEEEEecCCcceEEEEe
Q 013184 380 MAEPA----DFVHVYDAKNGFEKEQ-EIDFFG--EISGMTFSPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 380 s~~~d----~~v~vwd~~~~~~~~~-~~~~~~--~v~~~~fspdg~~L~~~~~D~~~~~ll~~~ 436 (448)
....+ ..|.++++.++..... +..+.. .+.++++ .+..|+..........+..+.
T Consensus 336 ~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 336 LTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp EECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEEE
T ss_pred EeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEEe
Confidence 44333 3677788765322233 344443 3444444 566666554444344444443
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.51 E-value=0.00013 Score=68.12 Aligned_cols=250 Identities=10% Similarity=0.019 Sum_probs=134.1
Q ss_pred ceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCC--CCCCCCCCcccCCcceeeEEEEec--CCEEEEEeCCC
Q 013184 137 NLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVA--PCEKHPGNLLEGFTQTQVSTLAVR--DNLLIAGGFQG 211 (448)
Q Consensus 137 ~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~--p~~~~~~~~~~~~~~~~i~~l~~~--~~~lvsg~~dg 211 (448)
.+.+.+..+.+|+. .++.|..|+..++.........+... .+.......... .......|+++ +..|+++...+
T Consensus 23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~p~gi~~~~~~g~l~v~d~~~ 101 (322)
T 2fp8_A 23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRP-LCGRTYDISYNLQNNQLYIVDCYY 101 (322)
T ss_dssp CEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHH-HHCCEEEEEEETTTTEEEEEETTT
T ss_pred EEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccc-cCCCCceEEEcCCCCcEEEEECCC
Confidence 34444544435654 35679999876554443322110000 000000000000 01135667773 45666665556
Q ss_pred eEEEEEcCCCCceeEEEeec-CCCCceeeEEEEeCC-CCCeeEEEEe-----------------CCCcEEEEecCCceEE
Q 013184 212 ELICKYLDQPGVSFCSRTTY-DENAITNAVEIYNSP-SGGIHFMASN-----------------NDCGVRDFDMERFQLS 272 (448)
Q Consensus 212 ~i~vw~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~-~~~~~l~s~s-----------------~dg~v~iwd~~~~~~~ 272 (448)
.|..++.............. ......+.+.+ .+ +|. ++++.. ..+.|..+|..+++..
T Consensus 102 ~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~--d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 102 HLSVVGSEGGHATQLATSVDGVPFKWLYAVTV--DQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp EEEEECTTCEECEEEESEETTEECSCEEEEEE--CTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CEEEEeCCCCEEEEecccCCCCcccccceEEE--ecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 67777765432221111111 11122344544 78 775 444322 1377899998877654
Q ss_pred EEeecCCCeeEEEECCCCCEEEEE-ecCCcEEEEECCCCc--eeEeeecCCCcEEEEEEcCCCCEEEEEeC---------
Q 013184 273 KHFSFPWPVNHTSLSPDGKLLVIV-GDNPEGILVDSQTGK--AIMPLCGHLDFSFASAWHPDGRIFATGNQ--------- 340 (448)
Q Consensus 273 ~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~i~d~~~~~--~~~~l~~h~~~v~~~~~~p~g~~l~s~~~--------- 340 (448)
.........+.++++|+++.|+++ ...+.|..+++.... ....+..... ...+++.++|+++++...
T Consensus 179 ~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~ 257 (322)
T 2fp8_A 179 LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGR 257 (322)
T ss_dssp EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSC
T ss_pred EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCC
Confidence 443333446789999999977666 456789999987531 1111211223 678999999987666544
Q ss_pred -CCcEEEEEccCCCcceEEEccCC----CCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 013184 341 -DKTCRVWDVRNLSKSVAVLKGNL----GAIRSIRFTSDGNFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 341 -d~~i~iwd~~~~~~~~~~~~~~~----~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~ 394 (448)
.+.|..+|.. ++.+..+.... ..+.++++ .+|++.++....+.|.++++..
T Consensus 258 ~~~~v~~~d~~--G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 258 VDPKGIKFDEF--GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEEEECTT--SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CccEEEEECCC--CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 3557777763 56666665432 34666766 3565555555677899998754
No 262
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.49 E-value=0.0004 Score=64.92 Aligned_cols=245 Identities=6% Similarity=-0.023 Sum_probs=143.4
Q ss_pred eEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cCCEEEEEeCCCeEEEEEcCCCC
Q 013184 146 DVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RDNLLIAGGFQGELICKYLDQPG 222 (448)
Q Consensus 146 ~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~~~lvsg~~dg~i~vw~~~~~~ 222 (448)
.++++....|+..++.+......+-+.+ .....+|++ .+.++++-...+.|..++++...
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~-----------------~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~ 68 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGG-----------------LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE 68 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEE-----------------EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSS
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecC-----------------CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCC
Confidence 4667777788888876543111111110 013557777 35666666778889888887653
Q ss_pred ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEe-ecCCCeeEEEECCCCCEEEEEe--cC
Q 013184 223 VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHF-SFPWPVNHTSLSPDGKLLVIVG--DN 299 (448)
Q Consensus 223 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~--~d 299 (448)
... ...... -..+..+++ .+.++.++++-...+.|.++++........+ ......+.+++.|.+..|+.+. ..
T Consensus 69 ~~~-~~~~~~-l~~p~glav--d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~ 144 (318)
T 3sov_A 69 SVQ-NVVVSG-LLSPDGLAC--DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV 144 (318)
T ss_dssp CCC-EEEEEC-CSCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSS
T ss_pred ceE-EEEcCC-CCCccEEEE--EcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence 211 111111 122344555 5555556666667788999998764433333 2345578999999766666655 35
Q ss_pred CcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEE
Q 013184 300 PEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATG-NQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFM 378 (448)
Q Consensus 300 ~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l 378 (448)
+.|...++........+.........++++|++..|+.+ +..+.|..+|+.. ................+++.. +..+
T Consensus 145 ~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~glav~~-~~ly 222 (318)
T 3sov_A 145 PKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHPFALTLFE-DILY 222 (318)
T ss_dssp CEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSCCSCEEEEEEET-TEEE
T ss_pred CEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-CceEEEecCCCCCceEEEEeC-CEEE
Confidence 778888875433222223334567899999976655555 4567899999863 222223333445567777753 3444
Q ss_pred EEEeCCCeEEEEECCCCceeeeeecCcCceEEEEE
Q 013184 379 AMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTF 413 (448)
Q Consensus 379 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~f 413 (448)
.+-...+.|..++..+|.....+......+.+|+.
T Consensus 223 wtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v 257 (318)
T 3sov_A 223 WTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 257 (318)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEECCCSSCCCEEE
T ss_pred EEecCCCeEEEEECCCCCceEEEeCCCCCCcEEEE
Confidence 55556688999998777765544432233344443
No 263
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.49 E-value=0.00013 Score=65.61 Aligned_cols=184 Identities=9% Similarity=0.075 Sum_probs=123.4
Q ss_pred eeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecC--CCeeEEEECCCCCEEEEEecCCcEEEEECCCCce--
Q 013184 237 TNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFP--WPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKA-- 312 (448)
Q Consensus 237 ~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~-- 312 (448)
...+.+ .|+++.++++...++.|...|+. +++++.+... ...-.+++.+++.++++.-.++.+.++++.....
T Consensus 29 lSGla~--~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~ 105 (255)
T 3qqz_A 29 ISSLTW--SAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK 105 (255)
T ss_dssp EEEEEE--ETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred cceeEE--eCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence 455555 67777777788889999999998 8888887643 5678899998887666655667888887654432
Q ss_pred -eEeee------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccC--CCcceEEEc-------cCCCCeEEEEEcCC-C
Q 013184 313 -IMPLC------GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRN--LSKSVAVLK-------GNLGAIRSIRFTSD-G 375 (448)
Q Consensus 313 -~~~l~------~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~--~~~~~~~~~-------~~~~~v~~l~~sp~-g 375 (448)
+.... ........++|+|.++.|+++.+.....||.+.. ....+..+. .+...+..++++|. |
T Consensus 106 ~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg 185 (255)
T 3qqz_A 106 ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKN 185 (255)
T ss_dssp EEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTT
T ss_pred eeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCC
Confidence 22221 1234468999999998777777766666666641 112233331 13345789999995 4
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeeecCc---------CceEEEEEccCCCeEEEEEe
Q 013184 376 NFMAMAEPADFVHVYDAKNGFEKEQEIDFF---------GEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 376 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~---------~~v~~~~fspdg~~L~~~~~ 425 (448)
++++.......|.++|.. |+.+..+.-.. ...-+|+|.|+|+ |++.+.
T Consensus 186 ~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE 242 (255)
T 3qqz_A 186 TLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSE 242 (255)
T ss_dssp EEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEET
T ss_pred eEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcC
Confidence 566666677889999965 55443332211 2678999999997 666553
No 264
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.48 E-value=0.00011 Score=74.66 Aligned_cols=202 Identities=11% Similarity=0.038 Sum_probs=118.4
Q ss_pred CCeEEEec--CCeEEEEec-CCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCE----EEEEeCCCeEE
Q 013184 144 KHDVYLMS--HFSIVHWSS-LSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNL----LIAGGFQGELI 214 (448)
Q Consensus 144 ~~~v~~~~--~~~v~~w~~-~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~----lvsg~~dg~i~ 214 (448)
...||+++ ++.|.-+|. .+++..=........... +.. ........+++ .+.. +++++.+|.|.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~---~~~----~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~ 134 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAAR---AVA----CCDLVNRGLAYWPGDGKTPALILKTQLDGNVA 134 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGG---GGC----SSCSCCCCCEEECCCSSSCCEEEEECTTSEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCcccc---ccc----cccccccceEEEecCCcceeEEEEEcCCCEEE
Confidence 45677765 356888887 676655444333211000 000 00000111233 3444 88888999999
Q ss_pred EEEcCCCCceeEEEeecCC--CCceeeEEEEeCCCCCeeEEEEe------CCCcEEEEecCCceEEEEeecCCCe-----
Q 013184 215 CKYLDQPGVSFCSRTTYDE--NAITNAVEIYNSPSGGIHFMASN------NDCGVRDFDMERFQLSKHFSFPWPV----- 281 (448)
Q Consensus 215 vw~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~~v----- 281 (448)
.+|..+.+........... ..+...-.+ .+ . .+++++ .++.|+-+|.++++.+..+....+.
T Consensus 135 AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v---~~-g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~ 209 (599)
T 1w6s_A 135 ALNAETGETVWKVENSDIKVGSTLTIAPYV---VK-D-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLL 209 (599)
T ss_dssp EEETTTCCEEEEEECCCGGGTCBCCSCCEE---ET-T-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTB
T ss_pred EEECCCCCEEEeecCCCCCccceeecCCEE---EC-C-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccc
Confidence 9999888755433332110 011111112 12 3 455554 3799999999999999887743222
Q ss_pred ----------------------------------eEEEECCCCCEEEEEecC----------------CcEEEEECCCCc
Q 013184 282 ----------------------------------NHTSLSPDGKLLVIVGDN----------------PEGILVDSQTGK 311 (448)
Q Consensus 282 ----------------------------------~~~~~sp~~~~l~~~~~d----------------~~i~i~d~~~~~ 311 (448)
..+++.+...+++++..+ +.|..+|..+|+
T Consensus 210 ~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~ 289 (599)
T 1w6s_A 210 ASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE 289 (599)
T ss_dssp CTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC
T ss_pred ccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc
Confidence 134556677788887765 379999999999
Q ss_pred eeEeeecCC----------CcEEEEEEc-CCC---CEEEEEeCCCcEEEEEccCCCcceEEE
Q 013184 312 AIMPLCGHL----------DFSFASAWH-PDG---RIFATGNQDKTCRVWDVRNLSKSVAVL 359 (448)
Q Consensus 312 ~~~~l~~h~----------~~v~~~~~~-p~g---~~l~s~~~d~~i~iwd~~~~~~~~~~~ 359 (448)
.+..++... .++. +... .+| ..++.++.+|.+.++|.++ ++.+...
T Consensus 290 ~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw~~ 349 (599)
T 1w6s_A 290 AKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTD-GALVSAN 349 (599)
T ss_dssp EEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTT-CCEEEEE
T ss_pred eeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCC-CCEeecc
Confidence 987766421 1222 2222 567 4677888999999999977 6555443
No 265
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.46 E-value=0.00034 Score=71.09 Aligned_cols=205 Identities=12% Similarity=0.099 Sum_probs=120.9
Q ss_pred CCeEEEecC-CeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcCCCC
Q 013184 144 KHDVYLMSH-FSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQPG 222 (448)
Q Consensus 144 ~~~v~~~~~-~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~ 222 (448)
...||+++. +.|.-+|..+++..=.......... .+.. ...-..+++.+..+++++.+|.|..+|..+.+
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~---~~~~------~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~ 138 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDI---RPCC------DVVNRGAAIYGDKVFFGTLDASVVALNKNTGK 138 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTC---CCSS------CSCCCCCEEETTEEEEEETTTEEEEEESSSCC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCccc---cccc------ccCCCccEEECCEEEEEeCCCEEEEEECCCCC
Confidence 456777654 5588888877766544444322110 0000 00001233457788889999999999998887
Q ss_pred ceeEEEeecCC--CCceeeEEEEeC-CCCCeeEEEEe------CCCcEEEEecCCceEEEEeecCC-Ce-----------
Q 013184 223 VSFCSRTTYDE--NAITNAVEIYNS-PSGGIHFMASN------NDCGVRDFDMERFQLSKHFSFPW-PV----------- 281 (448)
Q Consensus 223 ~~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~-~v----------- 281 (448)
........... ..+.....+... .++...+++++ .++.|+-+|.++++.+....... .+
T Consensus 139 ~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~ 218 (582)
T 1flg_A 139 VVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVT 218 (582)
T ss_dssp EEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEES
T ss_pred EEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccc
Confidence 65444332211 011111122212 12332555554 37899999999999887665321 00
Q ss_pred ------------------------------eEEEECCCCCEEEEEec--------------------C----CcEEEEEC
Q 013184 282 ------------------------------NHTSLSPDGKLLVIVGD--------------------N----PEGILVDS 307 (448)
Q Consensus 282 ------------------------------~~~~~sp~~~~l~~~~~--------------------d----~~i~i~d~ 307 (448)
..+++.|...+++++.. + +.|..+|.
T Consensus 219 g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~ 298 (582)
T 1flg_A 219 GDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDP 298 (582)
T ss_dssp SCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECT
T ss_pred cccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeC
Confidence 13456666777777663 2 57999999
Q ss_pred CCCceeEeeec--CC--------CcEEEEEEc-CCCC---EEEEEeCCCcEEEEEccCCCcceEEE
Q 013184 308 QTGKAIMPLCG--HL--------DFSFASAWH-PDGR---IFATGNQDKTCRVWDVRNLSKSVAVL 359 (448)
Q Consensus 308 ~~~~~~~~l~~--h~--------~~v~~~~~~-p~g~---~l~s~~~d~~i~iwd~~~~~~~~~~~ 359 (448)
.+|+.+..++. |. .++. +... .+|+ .++.++.+|.+.++|..+ ++.+...
T Consensus 299 ~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw~~ 362 (582)
T 1flg_A 299 SSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSN-GKLQNAF 362 (582)
T ss_dssp TTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTT-CCEEEEE
T ss_pred CCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCC-CCEeccc
Confidence 99999877653 31 2222 2222 4674 788899999999999976 5555443
No 266
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.45 E-value=0.00019 Score=73.12 Aligned_cols=160 Identities=12% Similarity=0.021 Sum_probs=100.1
Q ss_pred CcEEEEecCCceEEEEeecC-C---------CeeEEEEC-CCC---CEEEEEecCCcEEEEECCCCceeEeeecCC----
Q 013184 259 CGVRDFDMERFQLSKHFSFP-W---------PVNHTSLS-PDG---KLLVIVGDNPEGILVDSQTGKAIMPLCGHL---- 320 (448)
Q Consensus 259 g~v~iwd~~~~~~~~~~~~~-~---------~v~~~~~s-p~~---~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~---- 320 (448)
+.|..+|.++++.+..++.. . ...-+... .+| +.++.++.+|.+.++|..+|+.+.......
T Consensus 278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 357 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV 357 (599)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred ceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccc
Confidence 47999999999999888722 1 11112222 467 467778899999999999999876554211
Q ss_pred ---------CcE--------------------------EEEEEcCCCCEEEEEe--------------------------
Q 013184 321 ---------DFS--------------------------FASAWHPDGRIFATGN-------------------------- 339 (448)
Q Consensus 321 ---------~~v--------------------------~~~~~~p~g~~l~s~~-------------------------- 339 (448)
.++ ..++++|+..++++..
T Consensus 358 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 437 (599)
T 1w6s_A 358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLN 437 (599)
T ss_dssp EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred ccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccce
Confidence 111 1356777666555432
Q ss_pred -------------CCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcC
Q 013184 340 -------------QDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFG 406 (448)
Q Consensus 340 -------------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~ 406 (448)
..|.|..||+.+ ++.+-..... .++..-.+...|..++.++.|+.|+.||.++|+.+.++....+
T Consensus 438 ~~~~p~~~~~~~~~~G~l~A~D~~t-G~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g 515 (599)
T 1w6s_A 438 MYPGPKGDRQNYEGLGQIKAYNAIT-GDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG 515 (599)
T ss_dssp EEECTTSBTTTTBCCEEEEEECTTT-CCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred eccCCcCCcccCCCcCeEEEEECCC-CCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCC
Confidence 346788888876 5554443311 1111111222467788899999999999999999877654322
Q ss_pred c-eEEEEEccCCCeE
Q 013184 407 E-ISGMTFSPDTEAL 420 (448)
Q Consensus 407 ~-v~~~~fspdg~~L 420 (448)
. ..-+.+..+|+..
T Consensus 516 ~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 516 AIGYPMTYTHKGTQY 530 (599)
T ss_dssp CCSCCEEEEETTEEE
T ss_pred cEeccEEEEeCCEEE
Confidence 2 2235566788643
No 267
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.44 E-value=0.0015 Score=63.16 Aligned_cols=247 Identities=8% Similarity=-0.021 Sum_probs=149.3
Q ss_pred CCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cCCEEEEEeCCCeEEEEEcCC
Q 013184 144 KHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RDNLLIAGGFQGELICKYLDQ 220 (448)
Q Consensus 144 ~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~~~lvsg~~dg~i~vw~~~~ 220 (448)
...++++....|+..++.+.....++... ..+.+|++ .+.++++-...+.|..++++.
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~~~~~~~~~-------------------~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g 143 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSEYTSLIPNL-------------------RNVVALDTEVASNRIYWSDLSQRMICSTQLDR 143 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCSCEEEECSC-------------------SCEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred cceeEEeccceeEEEccCCcceeEecccc-------------------CcceEEeeeeccCceEEEecCCCeEEEEEccc
Confidence 34677778888999988766555544211 13567777 344555556678888888765
Q ss_pred CCc-eeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEe-
Q 013184 221 PGV-SFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVG- 297 (448)
Q Consensus 221 ~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~- 297 (448)
... .....+.......+..+++ .+.++.++++-...+.|.+.++........+. .......+++.|.+..|+...
T Consensus 144 ~~~~~~~~~~~~~~~~~p~glav--D~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~ 221 (400)
T 3p5b_L 144 AHGVSSYDTVISRDIQAPDGLAV--DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW 221 (400)
T ss_dssp ----CCCEEEECSSCSCEEEEEE--ETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEEC
T ss_pred CCCCCcceEEEeCCCCCcccEEE--EecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeC
Confidence 220 0011222222233445555 55455566776777899999998765544444 344578999999766666554
Q ss_pred -cCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEEccCCCcceEEEcc--CCCCeEEEEEcC
Q 013184 298 -DNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGN-QDKTCRVWDVRNLSKSVAVLKG--NLGAIRSIRFTS 373 (448)
Q Consensus 298 -~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~l~~sp 373 (448)
..+.|...++........+.........++++|++..|+.+. ..+.|..+|+.. ......... .......+++.
T Consensus 222 ~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~l~~P~gl~v~- 299 (400)
T 3p5b_L 222 GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF- 299 (400)
T ss_dssp SSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CCCEEEEECSSTTSSEEEEEEE-
T ss_pred CCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC-CccEEEEeCCCCCCCCEEEEEe-
Confidence 246788888765443333334446778999998777666654 467799999853 222222222 23345567763
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEE
Q 013184 374 DGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTF 413 (448)
Q Consensus 374 ~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~f 413 (448)
.+..+++....+.|..+|..+|..+..+......+.+|+.
T Consensus 300 ~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 300 EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 3345555556678999998888766665544444556554
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.44 E-value=2.4e-05 Score=81.02 Aligned_cols=222 Identities=11% Similarity=0.024 Sum_probs=130.2
Q ss_pred cCCEEEEEeCCC-----------eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEe-CCCcEEEEecC
Q 013184 200 RDNLLIAGGFQG-----------ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASN-NDCGVRDFDME 267 (448)
Q Consensus 200 ~~~~lvsg~~dg-----------~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s-~dg~v~iwd~~ 267 (448)
++++++.|+.++ .+.+||+.+........+...+.....++.+ ..++. +++.|+ .+..+.+||..
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~--~~~g~-lyv~GG~~~~~v~~yd~~ 273 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISM--DGNGQ-IVVTGGNDAKKTSLYDSS 273 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEE--CTTSC-EEEECSSSTTCEEEEEGG
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccC--CCCCC-EEEeCCCCCCceEEecCc
Confidence 788899988653 5788998887754433333333333323333 46665 666666 45689999998
Q ss_pred CceEEEEee--cCCCeeEEEECCCCCEEEEEe-cC-----CcEEEEECCCCceeEe-------ee---------------
Q 013184 268 RFQLSKHFS--FPWPVNHTSLSPDGKLLVIVG-DN-----PEGILVDSQTGKAIMP-------LC--------------- 317 (448)
Q Consensus 268 ~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~-~d-----~~i~i~d~~~~~~~~~-------l~--------------- 317 (448)
+.+....-. ....-.+++..++++++++|+ .+ ..+.+||..+++.... +.
T Consensus 274 t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iy 353 (656)
T 1k3i_A 274 SDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAW 353 (656)
T ss_dssp GTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCC
T ss_pred CCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceE
Confidence 877554433 222234566677899999988 34 4689999887653221 00
Q ss_pred ---cCCC---------------------------------------cEEEEEEcC-CCCEEEEEeCCC-----------c
Q 013184 318 ---GHLD---------------------------------------FSFASAWHP-DGRIFATGNQDK-----------T 343 (448)
Q Consensus 318 ---~h~~---------------------------------------~v~~~~~~p-~g~~l~s~~~d~-----------~ 343 (448)
+..+ ...++.+.. ++++++.|+.++ .
T Consensus 354 v~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~ 433 (656)
T 1k3i_A 354 LFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHI 433 (656)
T ss_dssp EEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEE
T ss_pred EEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceE
Confidence 0000 012233322 677777777432 5
Q ss_pred EEEEEccCCCcceEEE--ccCCCC-eEEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCceeee--eecCcCc
Q 013184 344 CRVWDVRNLSKSVAVL--KGNLGA-IRSIRFTSDGNFMAMAEPA-----------DFVHVYDAKNGFEKEQ--EIDFFGE 407 (448)
Q Consensus 344 i~iwd~~~~~~~~~~~--~~~~~~-v~~l~~sp~g~~l~s~~~d-----------~~v~vwd~~~~~~~~~--~~~~~~~ 407 (448)
|.+||..+ ..-.... ..+... -.++...|+|++++.|+.+ ..+.+||..+.+-... .......
T Consensus 434 v~~yd~~~-~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~ 512 (656)
T 1k3i_A 434 ITLGEPGT-SPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVY 512 (656)
T ss_dssp EECCSTTS-CCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCT
T ss_pred EEcCCCCC-CCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCcccc
Confidence 77777754 2222221 112222 2345667899999999854 4689999877543221 1111222
Q ss_pred eEEEEEccCCCeEEEEEe
Q 013184 408 ISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 408 v~~~~fspdg~~L~~~~~ 425 (448)
.....+.|+|+.+++|+.
T Consensus 513 hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 513 HSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp TEEEEECTTSCEEEEECC
T ss_pred ccHhhcCCCcEEEecCCC
Confidence 344567799999999885
No 269
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.42 E-value=0.00048 Score=66.23 Aligned_cols=222 Identities=9% Similarity=-0.002 Sum_probs=133.4
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCe
Q 013184 203 LLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPV 281 (448)
Q Consensus 203 ~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v 281 (448)
+|+.+. ...|+..++....... +.... .....+.+ .+.++.++++-...+.|+.+++.+......+. .....
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~~~~---~~~~~-~~~~gl~~--d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p 161 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSEYTL---LLNNL-ENAIALDF--HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESP 161 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCCCEE---EECSC-SCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCC
T ss_pred eeEeec-CccceeeccCCCcEEE---EecCC-CccEEEEE--ecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCc
Confidence 344333 3567777776554322 11111 22334444 76666667776678899999998766544443 23356
Q ss_pred eEEEECCCCCEEE-EEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeC-C-CcEEEEEccCCCcceEE
Q 013184 282 NHTSLSPDGKLLV-IVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ-D-KTCRVWDVRNLSKSVAV 358 (448)
Q Consensus 282 ~~~~~sp~~~~l~-~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~-d-~~i~iwd~~~~~~~~~~ 358 (448)
..+++.+.+..|+ +-...+.|.+.++........+.........++++|.+..|+.+.. . +.|..+++.. ......
T Consensus 162 ~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~ 240 (386)
T 3v65_B 162 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRII 240 (386)
T ss_dssp CCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEE
T ss_pred cEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC-CCcEEE
Confidence 7889988555554 4455678888887654433334444466789999997665555543 3 6788787753 222222
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEEEe
Q 013184 359 LKGNLGAIRSIRFTSDGNFMAMAE-PADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 359 ~~~~~~~v~~l~~sp~g~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~ 436 (448)
........+.|+|+|++..|..+. ..+.|..+++........+........+|++ ++..|+.+.+.. +.+..+.
T Consensus 241 ~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav--~~~~ly~td~~~--~~V~~~~ 315 (386)
T 3v65_B 241 ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWHT--KSINSAN 315 (386)
T ss_dssp ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE--ETTEEEEEETTT--TEEEEEE
T ss_pred EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE--ECCEEEEeeCCC--CeEEEEE
Confidence 333445678999998777776665 4568999997654333233333456788988 344676665532 4444444
No 270
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.42 E-value=0.00045 Score=65.44 Aligned_cols=214 Identities=9% Similarity=-0.013 Sum_probs=129.3
Q ss_pred CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCC
Q 013184 211 GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPD 289 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~ 289 (448)
..|+..++...... . +.... ..+..+.+ .+.++.++++-...+.|+.+++.+......+. .......+++.+.
T Consensus 53 ~~I~~i~~~g~~~~--~-~~~~~-~~~~~l~~--d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~ 126 (349)
T 3v64_C 53 IDIRQVLPHRSEYT--L-LLNNL-ENAIALDF--HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV 126 (349)
T ss_dssp SCEEEECTTSCCEE--E-EECSC-SCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT
T ss_pred cceEEEeCCCCeeE--E-eecCC-CceEEEEE--eccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecC
Confidence 45666666544322 1 11111 22334444 76666566676678889999988765444333 2345678999885
Q ss_pred CCEE-EEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEe-CC-CcEEEEEccCCCcceEEE-ccCCCC
Q 013184 290 GKLL-VIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGN-QD-KTCRVWDVRNLSKSVAVL-KGNLGA 365 (448)
Q Consensus 290 ~~~l-~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~-~d-~~i~iwd~~~~~~~~~~~-~~~~~~ 365 (448)
+..| ++-...+.|.+.++........+.........++++|.+..|+... .. +.|...++. +.....+ ......
T Consensus 127 ~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~~~~ 204 (349)
T 3v64_C 127 HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIADTHLFW 204 (349)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEESCCSSCSC
T ss_pred CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--CCCcEEEEECCCCC
Confidence 5555 4445667899999875543333434456678999999665554443 44 678888875 3333333 223445
Q ss_pred eEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEEEe
Q 013184 366 IRSIRFTSDGNFMAMAE-PADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 366 v~~l~~sp~g~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~ 436 (448)
.+.|+++|++..|..+. ..+.|..+++........+........+|++. +..|+.+.+.. +.+..+.
T Consensus 205 PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~--~~V~~~~ 272 (349)
T 3v64_C 205 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHT--KSINSAN 272 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTT--TEEEEEE
T ss_pred cceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecCCC--CeEEEEE
Confidence 78999999777776665 45689999976543332233334567889883 44677665432 4444444
No 271
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=0.00076 Score=71.23 Aligned_cols=266 Identities=12% Similarity=0.073 Sum_probs=152.5
Q ss_pred CCCCeEEEecC-CeEEEEecCCCceeEEEecC-CCCCCCCCCCCCcccCCcceeeEEEEe-cCCEEEEEeCCCeEEEEEc
Q 013184 142 TSKHDVYLMSH-FSIVHWSSLSSKRTEVLDVS-GHVAPCEKHPGNLLEGFTQTQVSTLAV-RDNLLIAGGFQGELICKYL 218 (448)
Q Consensus 142 ~~~~~v~~~~~-~~v~~w~~~~~~~~~~~~~~-gh~~p~~~~~~~~~~~~~~~~i~~l~~-~~~~lvsg~~dg~i~vw~~ 218 (448)
...+.++++.. +.|..++..+.......... ..+. .......+....|.+|.. ....|..|+.++-|..++.
T Consensus 266 d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~-----~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~ 340 (781)
T 3v9f_A 266 LKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIR-----EGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISN 340 (781)
T ss_dssp CTTSEEEEEESSSCEEEEETTCC---------CEEEC-----BCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECS
T ss_pred CCCCCEEEEeCCCCeEEECCCCCeeeeeecccccccc-----CCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCC
Confidence 34556666665 56777776554332221100 0000 000012344557899888 3456777887888888887
Q ss_pred CCCCceeEEEe------ecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEe---e-cCCCeeEEEECC
Q 013184 219 DQPGVSFCSRT------TYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHF---S-FPWPVNHTSLSP 288 (448)
Q Consensus 219 ~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~---~-~~~~v~~~~~sp 288 (448)
........... ..-....+.++ ...++|. |..|+.++.|..|+..+++..... . ....|.++...+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i--~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~ 416 (781)
T 3v9f_A 341 APPTFHTWSYSPTQMNESSLSNKVVSSV--CDDGQGK--LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS 416 (781)
T ss_dssp SCCSCEEEC----CCCSSCCSSSCEEEE--EECTTSC--EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT
T ss_pred CCCcceeeccCccccccCCCCCcceEEE--EEcCCCC--EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC
Confidence 65543211110 00012234444 3366664 667776777999998765543221 1 235688888888
Q ss_pred CCCEEEEEecCCcEEEEECCCCceeEeee--cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccC----
Q 013184 289 DGKLLVIVGDNPEGILVDSQTGKAIMPLC--GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGN---- 362 (448)
Q Consensus 289 ~~~~l~~~~~d~~i~i~d~~~~~~~~~l~--~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---- 362 (448)
++.+.+ |+..+.+..++..+++...... .....|.++...++|++. .|+. +-|.+||..+ ..........
T Consensus 417 ~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~-~~~~~~~~~~~~~~ 492 (781)
T 3v9f_A 417 EGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW-IGTH-AGVFVIDLAS-KKVIHHYDTSNSQL 492 (781)
T ss_dssp TSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE-EEET-TEEEEEESSS-SSCCEEECTTTSSC
T ss_pred CCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE-EEEC-CceEEEeCCC-CeEEecccCccccc
Confidence 776554 6666678899988776433221 134679999998888644 4455 4588899864 3332222211
Q ss_pred -CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeec----CcCceEEEEEccCCCeEEE
Q 013184 363 -LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEID----FFGEISGMTFSPDTEALFI 422 (448)
Q Consensus 363 -~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~----~~~~v~~~~fspdg~~L~~ 422 (448)
...|.++...++|++.+.....| |..||..++... .+.. ....|.++...++|...++
T Consensus 493 ~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~ 555 (781)
T 3v9f_A 493 LENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLA 555 (781)
T ss_dssp SCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEE
T ss_pred ccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEE
Confidence 35789999999988655433345 788997665432 2221 1346889999888875543
No 272
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.40 E-value=0.00013 Score=74.12 Aligned_cols=161 Identities=19% Similarity=0.126 Sum_probs=102.2
Q ss_pred CcEEEEecCCceEEEEeecC-C---------CeeEEEEC-CCCC---EEEEEecCCcEEEEECCCCceeEeeecCC----
Q 013184 259 CGVRDFDMERFQLSKHFSFP-W---------PVNHTSLS-PDGK---LLVIVGDNPEGILVDSQTGKAIMPLCGHL---- 320 (448)
Q Consensus 259 g~v~iwd~~~~~~~~~~~~~-~---------~v~~~~~s-p~~~---~l~~~~~d~~i~i~d~~~~~~~~~l~~h~---- 320 (448)
+.|..+|..+++.+..++.. . ...-+... .+|+ .++.++.+|.++++|..+|+.+.......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 68999999999999888621 1 11111221 4674 67788999999999999999876654321
Q ss_pred ---------CcE--------------------------------EEEEEcCCCCEEEEEe--------------------
Q 013184 321 ---------DFS--------------------------------FASAWHPDGRIFATGN-------------------- 339 (448)
Q Consensus 321 ---------~~v--------------------------------~~~~~~p~g~~l~s~~-------------------- 339 (448)
.++ ..++++|+..++++..
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence 000 1346677555444432
Q ss_pred -------------CCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcC
Q 013184 340 -------------QDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFG 406 (448)
Q Consensus 340 -------------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~ 406 (448)
.+|.|..||+.+ ++.+-...... ++..-.....|..++.++.|+.|+.||.++|+.+.++....+
T Consensus 451 ~g~~~~~~p~~~~~~G~l~A~D~~t-G~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g 528 (582)
T 1flg_A 451 LGMGFRIKRMYDDHVGSLRAMDPVS-GKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG 528 (582)
T ss_dssp CCEEEEEEESCSSCSEEEEEECTTT-CCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred eccceeecCCCCCCcceEEEEECCC-CCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC
Confidence 257788999976 55554443221 221111222467788899999999999999999877765333
Q ss_pred ce-EEEEEccCCCeEE
Q 013184 407 EI-SGMTFSPDTEALF 421 (448)
Q Consensus 407 ~v-~~~~fspdg~~L~ 421 (448)
.+ .-+.|..+|+..+
T Consensus 529 ~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 529 IVSPPITWEQDGEQYL 544 (582)
T ss_dssp CCSCCEEEEETTEEEE
T ss_pred cccCceEEEECCEEEE
Confidence 22 2266777886433
No 273
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.38 E-value=0.0011 Score=69.68 Aligned_cols=244 Identities=8% Similarity=-0.026 Sum_probs=143.8
Q ss_pred CeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cCCEEEEEeCCCeEEEEEcCCC
Q 013184 145 HDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RDNLLIAGGFQGELICKYLDQP 221 (448)
Q Consensus 145 ~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~~~lvsg~~dg~i~vw~~~~~ 221 (448)
..++++....|+..++.......++... ..+.+|++ .+.++++-...+.|+.++++..
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~~~~l~~~~-------------------~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~ 456 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSEYTSLIPNL-------------------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRA 456 (791)
T ss_dssp CEEEEECBSSEEEECTTSCCCEEEECSC-------------------SSEEEEEEETTTTEEEEEETTTTEEEEEEC---
T ss_pred cccccccccceeEeeccCCcceeeecCC-------------------CceEEEeecccCCeeEEeeccceeEEEEeccCC
Confidence 4566777777888876655444443211 12567777 3456666667788888888753
Q ss_pred Cc-eeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEec-
Q 013184 222 GV-SFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGD- 298 (448)
Q Consensus 222 ~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~- 298 (448)
.. .....+.......+..+++ .+.+++++++-...+.|.+.++........+. .......|++.|.+..|+.+..
T Consensus 457 ~~~~~~~~vi~~~l~~P~GLAv--D~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g 534 (791)
T 3m0c_C 457 HGVSSYDTVISRDIQAPDGLAV--DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG 534 (791)
T ss_dssp -----CEEEECSSCSCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS
T ss_pred CCCcceeEEEecCCCCcceeee--eecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC
Confidence 21 0111222222233445655 55666677777778899999998655444443 3455889999997666666542
Q ss_pred -CCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEEccCCCcceEEEcc--CCCCeEEEEEcCC
Q 013184 299 -NPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGN-QDKTCRVWDVRNLSKSVAVLKG--NLGAIRSIRFTSD 374 (448)
Q Consensus 299 -d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~l~~sp~ 374 (448)
.+.|...++........+.........|++++.+..|+.+. ....|...++.. ......+.. .......|++.
T Consensus 535 ~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG-~~~~~v~~~~~~l~~P~glav~-- 611 (791)
T 3m0c_C 535 TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-- 611 (791)
T ss_dssp SSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE--
T ss_pred CCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC-CceEEEecCCCccCCCCEEEEe--
Confidence 36788888765444333444456788999998666665554 456788888853 333233332 22334566664
Q ss_pred CCEEEEEe-CCCeEEEEECCCCceeeeeecCcCceEEEE
Q 013184 375 GNFMAMAE-PADFVHVYDAKNGFEKEQEIDFFGEISGMT 412 (448)
Q Consensus 375 g~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~ 412 (448)
+.+|+.+. ..+.|...|..+|..+..+........+|+
T Consensus 612 ~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~ 650 (791)
T 3m0c_C 612 EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 650 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEE
T ss_pred CCEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEe
Confidence 34555544 557888899877766555543333333443
No 274
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=0.00069 Score=71.52 Aligned_cols=262 Identities=12% Similarity=0.069 Sum_probs=153.0
Q ss_pred CCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-cCCEEEEEeCCCeEEEEEcCC
Q 013184 142 TSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-RDNLLIAGGFQGELICKYLDQ 220 (448)
Q Consensus 142 ~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-~~~~lvsg~~dg~i~vw~~~~ 220 (448)
...+.++++....+..|+..+..........+ . ...+....|.++.. ....|..|+..+-|.+++..+
T Consensus 219 d~~g~lwigt~~Gl~~~d~~~~~~~~~~~~~~--~---------~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 219 DTNGNIWIGTSKGLALFNANTETFTNFHNNPG--N---------IHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQ 287 (781)
T ss_dssp CTTCCEEEEETTEEEEEETTTTEEEC----------------------CCCCEEEEEECTTSEEEEEESSSCEEEEETTC
T ss_pred cCCCCEEEEeCCcHheECCCCCcEEEEEcCCC--c---------cccccCceEEEEEECCCCCEEEEeCCCCeEEECCCC
Confidence 44556777765678888865544332211110 0 00123346888888 456777788756678888766
Q ss_pred CCceeEEE-------eec----CCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEe-------e---cCC
Q 013184 221 PGVSFCSR-------TTY----DENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHF-------S---FPW 279 (448)
Q Consensus 221 ~~~~~~~~-------~~~----~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~-------~---~~~ 279 (448)
........ ... -....+ .+++..+.|. |..|+.++.|..++..+....... . ...
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v--~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 363 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASA--RYIFQDSFNN--IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNK 363 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCE--EEEEECSSCC--EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSS
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeE--EEEEEeCCCC--EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCc
Confidence 54321111 000 011223 3444467664 677777788999998765433221 1 235
Q ss_pred CeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEee---ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcce
Q 013184 280 PVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPL---CGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSV 356 (448)
Q Consensus 280 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l---~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~ 356 (448)
.|.++...++|.+ .+|+.++-+..++..+++..... ......|.++...++|.+.+ |+.++-+..++..+ + .+
T Consensus 364 ~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~-~-~~ 439 (781)
T 3v9f_A 364 VVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRL-K-KF 439 (781)
T ss_dssp CEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSS-C-EE
T ss_pred ceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCC-C-cE
Confidence 6889988887764 45666667889998765432211 12346789999888887544 66666688888754 2 23
Q ss_pred EEEc---cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecC-----cCceEEEEEccCCCeEEEEEe
Q 013184 357 AVLK---GNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDF-----FGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 357 ~~~~---~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-----~~~v~~~~fspdg~~L~~~~~ 425 (448)
..+. .....|.++...++|++. .|+. +-|.+||..++......... ...|.++...++|... +|+.
T Consensus 440 ~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~ 513 (781)
T 3v9f_A 440 QIIELEKNELLDVRVFYEDKNKKIW-IGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW-IGTF 513 (781)
T ss_dssp EECCSTTTCCCCEEEEEECTTSEEE-EEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE-EEES
T ss_pred EEeccCCCCCCeEEEEEECCCCCEE-EEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE-EEEc
Confidence 3332 134579999988888654 4455 45899998776543222111 3568999999888754 4443
No 275
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.29 E-value=0.0003 Score=65.68 Aligned_cols=164 Identities=12% Similarity=-0.012 Sum_probs=107.1
Q ss_pred CcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEE-ecCCcEEEEECCC----CceeEeeecCCCcEEEEEEcCCCC
Q 013184 259 CGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIV-GDNPEGILVDSQT----GKAIMPLCGHLDFSFASAWHPDGR 333 (448)
Q Consensus 259 g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~i~d~~~----~~~~~~l~~h~~~v~~~~~~p~g~ 333 (448)
..|+..++.+.+....+.....+..++|++.+..|+.+ ...+.|..+++.. ......+.........+++++.+.
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~ 89 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence 56899999887766666555667899999876666555 4567899999875 222222332234456788887554
Q ss_pred -EEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEECCCCceeeeee-cCcCceE
Q 013184 334 -IFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA--DFVHVYDAKNGFEKEQEI-DFFGEIS 409 (448)
Q Consensus 334 -~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d--~~v~vwd~~~~~~~~~~~-~~~~~v~ 409 (448)
++++-...+.|.+.++.. ......+.......+.+++.|.+.+|..+... +.|..+++.. .....+. .......
T Consensus 90 ~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~ 167 (316)
T 1ijq_A 90 NIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPN 167 (316)
T ss_dssp EEEEEETTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEE
T ss_pred eEEEEECCCCEEEEEeCCC-CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCce
Confidence 445556678899999853 22222333344567899999977766666543 6898898753 3333332 2345688
Q ss_pred EEEEccCCCeEEEEE
Q 013184 410 GMTFSPDTEALFIGV 424 (448)
Q Consensus 410 ~~~fspdg~~L~~~~ 424 (448)
+|+|+|++..|+.+-
T Consensus 168 gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 168 GITLDLLSGRLYWVD 182 (316)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEeccCCEEEEEE
Confidence 999999988888764
No 276
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.26 E-value=0.00039 Score=64.98 Aligned_cols=190 Identities=14% Similarity=0.242 Sum_probs=124.2
Q ss_pred eEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCC----CCE--EEEEe--c--CCcEEEEEC--CCCceeEeeec
Q 013184 251 HFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPD----GKL--LVIVG--D--NPEGILVDS--QTGKAIMPLCG 318 (448)
Q Consensus 251 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~----~~~--l~~~~--~--d~~i~i~d~--~~~~~~~~l~~ 318 (448)
+++.....+.|.+||+ .++.++.+.. +.++.+..-|. |+. +++++ . +++|.+|++ .+++ +..+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccc
Confidence 5777777889999999 7888877764 67888888773 222 33333 3 578999965 4443 444421
Q ss_pred -------CCCcEEEEEE--cCC-CC-EEEEEeCCCcEEEEEccCC------CcceEEEccCCCCeEEEEEcCCCCEEEEE
Q 013184 319 -------HLDFSFASAW--HPD-GR-IFATGNQDKTCRVWDVRNL------SKSVAVLKGNLGAIRSIRFTSDGNFMAMA 381 (448)
Q Consensus 319 -------h~~~v~~~~~--~p~-g~-~l~s~~~d~~i~iwd~~~~------~~~~~~~~~~~~~v~~l~~sp~g~~l~s~ 381 (448)
-...+..+++ +|. +. ++++...+|.+..|++... .+.++.+... +.+-.+...+...+|..+
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~ 197 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIA 197 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEE
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEe
Confidence 1144556666 774 44 6788888999999998431 2455666643 467788889988999999
Q ss_pred eCCCeEEEEECC-----CCceeeeee-cC-cCceEEEEE--ccCCC-eEEEEEecCCcceEEEEecccceEeccc
Q 013184 382 EPADFVHVYDAK-----NGFEKEQEI-DF-FGEISGMTF--SPDTE-ALFIGVWDRTYGSLLQYNRCRNYTYLDT 446 (448)
Q Consensus 382 ~~d~~v~vwd~~-----~~~~~~~~~-~~-~~~v~~~~f--spdg~-~L~~~~~D~~~~~ll~~~~~~~~~~l~~ 446 (448)
..+.-|..++.. ++..+.... ++ ...+.+|++ .++|+ +|++++... ..+.-|.+...+.|+-+
T Consensus 198 eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~--~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 198 EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN--SSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp ETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG--TEEEEEESSTTCCEEEE
T ss_pred cccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC--CEEEEEECCCCCcEEEE
Confidence 998778888855 233333221 22 246899998 56666 787776432 45666666545555543
No 277
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=0.0016 Score=63.58 Aligned_cols=223 Identities=14% Similarity=0.105 Sum_probs=124.6
Q ss_pred EEEEec---CCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC----cEEEEecC
Q 013184 195 STLAVR---DNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC----GVRDFDME 267 (448)
Q Consensus 195 ~~l~~~---~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg----~v~iwd~~ 267 (448)
..|+++ +..|++....+.|+.+++....... +. ........+++ ++++..++++....+ .+..++..
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~---~~-~~~~~P~~ia~--d~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST---VY-SGLSKVRTICW--THEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE---EE-CCCSCEEEEEE--CTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE---Ee-cCCCCcceEEE--eCCCCEEEEEeCCCCcccceEEEEeCC
Confidence 344443 3455555555888888887654321 11 13333455655 888874555544322 23334432
Q ss_pred CceEE--EEeecCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceeEeeec-CCCcEEEEEEcCCCCEEEEE-eCCC
Q 013184 268 RFQLS--KHFSFPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGKAIMPLCG-HLDFSFASAWHPDGRIFATG-NQDK 342 (448)
Q Consensus 268 ~~~~~--~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~-h~~~v~~~~~~p~g~~l~s~-~~d~ 342 (448)
+... ..+........++++| ++.++++-...+.|..++..++........ .......++|+|+|++|+.+ ...+
T Consensus 214 -g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~ 292 (430)
T 3tc9_A 214 -SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQH 292 (430)
T ss_dssp -GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTT
T ss_pred -CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCC
Confidence 2211 2222233457888999 677666666778999999887654222221 22346789999999955544 4567
Q ss_pred cEEEEEccCCCcc---eEEEccC---------------CCCeE-EEEEc--------CCCCEEEEEeCCCeEEEEECCCC
Q 013184 343 TCRVWDVRNLSKS---VAVLKGN---------------LGAIR-SIRFT--------SDGNFMAMAEPADFVHVYDAKNG 395 (448)
Q Consensus 343 ~i~iwd~~~~~~~---~~~~~~~---------------~~~v~-~l~~s--------p~g~~l~s~~~d~~v~vwd~~~~ 395 (448)
.|..++....... +..+.+. ..... .+... ++|.+.++=...+.|+.++ ..|
T Consensus 293 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G 371 (430)
T 3tc9_A 293 YILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQG 371 (430)
T ss_dssp EEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTS
T ss_pred EEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCC
Confidence 8999887531111 1222211 11122 45553 3455555555667899998 455
Q ss_pred ceeeeeecC------------------cCceEEEEEccCCCeEEEEEec
Q 013184 396 FEKEQEIDF------------------FGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 396 ~~~~~~~~~------------------~~~v~~~~fspdg~~L~~~~~D 426 (448)
... .+.+. .....+|+++|++..|+++-..
T Consensus 372 ~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~ 419 (430)
T 3tc9_A 372 RVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRE 419 (430)
T ss_dssp EEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred cEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECC
Confidence 433 22211 2258999999965667766443
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.21 E-value=0.0025 Score=59.43 Aligned_cols=218 Identities=10% Similarity=0.035 Sum_probs=130.8
Q ss_pred CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEE-EEee-cCCCeeEEEEC
Q 013184 210 QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLS-KHFS-FPWPVNHTSLS 287 (448)
Q Consensus 210 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~-~~~~v~~~~~s 287 (448)
...|+..+++............ ....+.+.+.+.++.++++-...+.|..+++.+.... ..+. .-.....+++.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~----~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd 87 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGG----LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 87 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEE----EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEE
T ss_pred cCeEEEEECCCCceEEEEEecC----CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEE
Confidence 4578888887664222111111 1234444456766656777677788999998765321 1222 23456789998
Q ss_pred CCCCEE-EEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeC--CCcEEEEEccCCCcceEEE-ccCC
Q 013184 288 PDGKLL-VIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ--DKTCRVWDVRNLSKSVAVL-KGNL 363 (448)
Q Consensus 288 p~~~~l-~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~--d~~i~iwd~~~~~~~~~~~-~~~~ 363 (448)
+.+..| ++-...+.|.++++........+.........++++|.+..|+.+.. .+.|...++. +.....+ ....
T Consensus 88 ~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~l 165 (318)
T 3sov_A 88 WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFIIINSEI 165 (318)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--SCSCEEEECSSC
T ss_pred cCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--CCCeEEEEECCC
Confidence 755544 44456678999998654433333344566789999997665555553 4677777775 3333333 3334
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEEEec
Q 013184 364 GAIRSIRFTSDGNFMAMAE-PADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYNR 437 (448)
Q Consensus 364 ~~v~~l~~sp~g~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~~ 437 (448)
...+.|+++|++..|..+. ..+.|..+|+.................++++. +..|+.+-+ ..+.+..+.+
T Consensus 166 ~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~--~~~~V~~~~~ 236 (318)
T 3sov_A 166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDW--STHSILACNK 236 (318)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEET--TTTEEEEEET
T ss_pred CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEec--CCCeEEEEEC
Confidence 5678999999777776665 45789999986433322222244567888885 446666543 3345555544
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.20 E-value=0.0007 Score=65.42 Aligned_cols=172 Identities=12% Similarity=-0.019 Sum_probs=113.4
Q ss_pred eEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEe-cCCcEEEEECCCC----ceeEeeecCCCcEEE
Q 013184 251 HFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVG-DNPEGILVDSQTG----KAIMPLCGHLDFSFA 325 (448)
Q Consensus 251 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~----~~~~~l~~h~~~v~~ 325 (448)
+|+.+. ...|+..++..............+..++|++....|+.+. ..+.|+.+++... .....+.........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 163 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 163 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence 333333 4689999998776666666667788999999666666554 5678888887652 223333334556788
Q ss_pred EEEcCC-CCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCceeeeee
Q 013184 326 SAWHPD-GRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEP--ADFVHVYDAKNGFEKEQEI 402 (448)
Q Consensus 326 ~~~~p~-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~--d~~v~vwd~~~~~~~~~~~ 402 (448)
+++.+. ++++++-...+.|.+.++.. ......+.......+.|++.|.+.+|..+.. .+.|...++..........
T Consensus 164 lavD~~~~~lY~~d~~~~~I~~~~~~g-~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 164 LAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTT-CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred EEEEecCCceEEEECCCCeEEEEeCCC-CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 999884 44555555677899888863 3333333334456789999997777776653 3689999976543332223
Q ss_pred cCcCceEEEEEccCCCeEEEEE
Q 013184 403 DFFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 403 ~~~~~v~~~~fspdg~~L~~~~ 424 (448)
.......+|+++|++..|+.+-
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD 264 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVD 264 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEEEeCCCEEEEEE
Confidence 3346789999999988888773
No 280
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.14 E-value=0.00048 Score=63.81 Aligned_cols=181 Identities=12% Similarity=0.094 Sum_probs=108.1
Q ss_pred eeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCC--cEEEEECCCCceeEe
Q 013184 238 NAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNP--EGILVDSQTGKAIMP 315 (448)
Q Consensus 238 ~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--~i~i~d~~~~~~~~~ 315 (448)
..+.+ ++++. ++++....+.|..||..+ +....+.....+..+++.++|+++++..... .|..++..+++....
T Consensus 35 egia~--~~~g~-lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~ 110 (306)
T 2p4o_A 35 ENLAS--APDGT-IFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 110 (306)
T ss_dssp EEEEE--CTTSC-EEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred ceEEE--CCCCC-EEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence 34444 77775 566655788999999875 4444555566789999999999665554332 477778788775432
Q ss_pred ee-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEc---------cCCCCeEEEEEcCCCCEEEEEe-CC
Q 013184 316 LC-GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLK---------GNLGAIRSIRFTSDGNFMAMAE-PA 384 (448)
Q Consensus 316 l~-~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------~~~~~v~~l~~sp~g~~l~s~~-~d 384 (448)
.. ........++..+++..+++-...+.|.++|.......+.... ......+.+ +|+|++|..+. ..
T Consensus 111 ~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~ 188 (306)
T 2p4o_A 111 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEK 188 (306)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTT
T ss_pred EeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCC
Confidence 22 1223344555556555555554678888888753111121111 111234555 88888776665 46
Q ss_pred CeEEEEECCC-Ccee-eeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 385 DFVHVYDAKN-GFEK-EQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 385 ~~v~vwd~~~-~~~~-~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
+.|.+|++.. +... ...........+++++++|++ +++.+
T Consensus 189 ~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l-~va~~ 230 (306)
T 2p4o_A 189 MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNL-YGATH 230 (306)
T ss_dssp TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCE-EEECB
T ss_pred CEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCE-EEEeC
Confidence 7999999874 3211 111111245778999999965 55443
No 281
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.12 E-value=0.0098 Score=60.86 Aligned_cols=230 Identities=7% Similarity=-0.014 Sum_probs=141.0
Q ss_pred CeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cCCEEEEEeCCCeEEEEEcCCC
Q 013184 145 HDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RDNLLIAGGFQGELICKYLDQP 221 (448)
Q Consensus 145 ~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~~~lvsg~~dg~i~vw~~~~~ 221 (448)
..++++....|+..++.+.....++.+.+-. ....|++ .+.++++-..++.|..++++..
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~-----------------~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~ 69 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETNNNNVAIPLTGVK-----------------EASALDFDVTDNRIYWTDISLKTISRAFMNGS 69 (628)
T ss_dssp CEEEEEETTEEEEEESSCTTCEEECCCCSCS-----------------CEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred cEEEEEeCCcEEEEECCCCCcceEEEcCCCC-----------------ceEEEEEECCCCEEEEEECCCCeEEEEECCCC
Confidence 3466777788998888765544444333211 2567777 3456666677889988888765
Q ss_pred CceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEe-ecCCCeeEEEECCCCCEEEEEe--c
Q 013184 222 GVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHF-SFPWPVNHTSLSPDGKLLVIVG--D 298 (448)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~--~ 298 (448)
.... ... .....+..+++ .+.+++++++-...+.|.+.++........+ ..-.....+++.|....|+... .
T Consensus 70 ~~~~--v~~-~g~~~P~GlAv--D~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~ 144 (628)
T 4a0p_A 70 ALEH--VVE-FGLDYPEGMAV--DWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG 144 (628)
T ss_dssp SCEE--EEC-SSCSCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSS
T ss_pred CcEE--EEe-CCCCCcceEEE--EeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCC
Confidence 4322 121 11123445555 5555656677667788999998764432233 2334578999999655665554 2
Q ss_pred CCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCE
Q 013184 299 NPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGN-QDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNF 377 (448)
Q Consensus 299 d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~ 377 (448)
.+.|...++..... ..+.........+++++++..|+.+. ..+.|...++.. ... ..+.........+++.. +..
T Consensus 145 ~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG-~~~-~v~~~~l~~P~glav~~-~~l 220 (628)
T 4a0p_A 145 KPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG-LNR-EVIADDLPHPFGLTQYQ-DYI 220 (628)
T ss_dssp SCEEEEEETTSCSC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSC-EEEEECCSCEEEEEEET-TEE
T ss_pred CCEEEEEeCCCCce-EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC-Cce-EEeeccCCCceEEEEEC-CEE
Confidence 56777777764433 33333456778999999776666554 467889999864 222 34444444556788765 344
Q ss_pred EEEEeCCCeEEEEECCCCceeee
Q 013184 378 MAMAEPADFVHVYDAKNGFEKEQ 400 (448)
Q Consensus 378 l~s~~~d~~v~vwd~~~~~~~~~ 400 (448)
.++-...+.|...|..++.....
T Consensus 221 y~tD~~~~~I~~~dk~tg~~~~~ 243 (628)
T 4a0p_A 221 YWTDWSRRSIERANKTSGQNRTI 243 (628)
T ss_dssp EEEETTTTEEEEEETTTCCSCEE
T ss_pred EEecCCCCEEEEEECCCCCceEE
Confidence 44444578899999777754433
No 282
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.10 E-value=0.00061 Score=71.59 Aligned_cols=189 Identities=13% Similarity=0.086 Sum_probs=103.5
Q ss_pred EEEE-ecCCEEEEEeC-CC----eEEEEEcCCC-CceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC----CcEEE
Q 013184 195 STLA-VRDNLLIAGGF-QG----ELICKYLDQP-GVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND----CGVRD 263 (448)
Q Consensus 195 ~~l~-~~~~~lvsg~~-dg----~i~vw~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d----g~v~i 263 (448)
.+++ .+|++|+.+.. +| +|.++++.++ .... ..+.. ....+ .|+|+|+.++++.... ..|++
T Consensus 179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~~~----~~~~~--~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKVSG----TNGEI--VWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCEEE----ECSCC--EECSSTTEEEEEEECTTCCEEEEEE
T ss_pred eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-ccccC----ceeeE--EEecCCCEEEEEEECCCCCCCEEEE
Confidence 3456 67887775443 33 5999999876 4210 01111 11233 4589988555554322 36888
Q ss_pred EecCCceE--EEEee--cCCCeeEEEECCCCCEEEEEec---CCcEEEEECCCCc-ee--Eee-ecCCCcEEEEEEcCCC
Q 013184 264 FDMERFQL--SKHFS--FPWPVNHTSLSPDGKLLVIVGD---NPEGILVDSQTGK-AI--MPL-CGHLDFSFASAWHPDG 332 (448)
Q Consensus 264 wd~~~~~~--~~~~~--~~~~v~~~~~sp~~~~l~~~~~---d~~i~i~d~~~~~-~~--~~l-~~h~~~v~~~~~~p~g 332 (448)
+++.+++. ...+. .......+.|+|+|++|+..+. ...|.++|+.++. .. ..+ .......+++.|+..+
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 88876541 22222 2334567899999999887663 3468889988762 12 333 3344555667666544
Q ss_pred CEEEEEeCC--C--cEEEEEccCCCcceEE-EccCCC--CeEEEEEcCCCCEEEEEeCCC--eEEEEEC
Q 013184 333 RIFATGNQD--K--TCRVWDVRNLSKSVAV-LKGNLG--AIRSIRFTSDGNFMAMAEPAD--FVHVYDA 392 (448)
Q Consensus 333 ~~l~s~~~d--~--~i~iwd~~~~~~~~~~-~~~~~~--~v~~l~~sp~g~~l~s~~~d~--~v~vwd~ 392 (448)
.+++....+ + .|..+++.+. ..... +..+.. .+..+.+. .+.++++...++ .|+++++
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 455555544 3 4555565431 22222 333333 34555554 233445555666 4666775
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.07 E-value=0.0039 Score=60.84 Aligned_cols=223 Identities=14% Similarity=0.115 Sum_probs=125.6
Q ss_pred EEEEec----CCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC----CcEEEEec
Q 013184 195 STLAVR----DNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND----CGVRDFDM 266 (448)
Q Consensus 195 ~~l~~~----~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d----g~v~iwd~ 266 (448)
..|+++ +..|+.+...+.|+.+++...... .+. .....+..+.+ +++|. ++++.... ..+..++.
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~---~~~-~~~~~P~giav--d~dG~-lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD---IKT-TNIGQCADVNF--TLNGD-MVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE---EEC-CCCSCEEEEEE--CTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred ceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE---Eee-cCCCCccEEEE--CCCCC-EEEEcCCCCcccceEEEEEC
Confidence 456664 245555544488888887654432 111 22333455555 88887 55544321 12333333
Q ss_pred CCceE-EEEeecCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceeEeee--cCCCcEEEEEEcCCCCEEEEE-eCC
Q 013184 267 ERFQL-SKHFSFPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGKAIMPLC--GHLDFSFASAWHPDGRIFATG-NQD 341 (448)
Q Consensus 267 ~~~~~-~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~l~--~h~~~v~~~~~~p~g~~l~s~-~~d 341 (448)
..+.. ...+........++++| +|.+.++-..++.|+.++..++.....+. +.......++|+|+|++|+.+ ...
T Consensus 215 ~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 215 ASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp GGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred CCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence 22111 11222234456788999 67666665677889999988776633322 112233579999999955555 456
Q ss_pred CcEEEEEccCCCcc---eEEEccC---------------CCCeEEEEE---------cCCCCEEEEEeCCCeEEEEECCC
Q 013184 342 KTCRVWDVRNLSKS---VAVLKGN---------------LGAIRSIRF---------TSDGNFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 342 ~~i~iwd~~~~~~~---~~~~~~~---------------~~~v~~l~~---------sp~g~~l~s~~~d~~v~vwd~~~ 394 (448)
+.|+.++....... ...+.+. ......+++ .++|.+.++-...+.|+.++. +
T Consensus 295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~ 373 (433)
T 4hw6_A 295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-E 373 (433)
T ss_dssp TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-T
T ss_pred CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-C
Confidence 78888886521111 1222221 123567899 777777766666789999984 5
Q ss_pred CceeeeeecC------------------cCceEEEEEccCCCeEEEEEec
Q 013184 395 GFEKEQEIDF------------------FGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 395 ~~~~~~~~~~------------------~~~v~~~~fspdg~~L~~~~~D 426 (448)
|... .+.+. .....+|+++|....|+++-..
T Consensus 374 G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~ 422 (433)
T 4hw6_A 374 GRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCD 422 (433)
T ss_dssp SEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred CCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCC
Confidence 5332 22211 2348899999544456665443
No 284
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.04 E-value=0.00041 Score=67.75 Aligned_cols=146 Identities=15% Similarity=0.112 Sum_probs=94.2
Q ss_pred CeeEEEECC-CCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCC-C----cEEEEEccCCC
Q 013184 280 PVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQD-K----TCRVWDVRNLS 353 (448)
Q Consensus 280 ~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d-~----~i~iwd~~~~~ 353 (448)
....++++| ++..|+++...+.|+.+|+.+++... +.........++|+++|++|+.+... + .+.+.+.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 457889998 46667666655789999988766443 33345668899999999966666542 2 23334432211
Q ss_pred cceEEEccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeeee-cCcCceEEEEEccCCCeEEEEEecC
Q 013184 354 KSVAVLKGNLGAIRSIRFTS-DGNFMAMAEPADFVHVYDAKNGFEKEQEI-DFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 354 ~~~~~~~~~~~~v~~l~~sp-~g~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
.....+.. ......++++| +|.++++-...+.|..++...+....... .......+|+|+|+|++|+++....
T Consensus 217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence 11123332 33457789999 67766666677899999987665422211 1224578999999999888775443
No 285
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.02 E-value=0.0035 Score=56.16 Aligned_cols=191 Identities=7% Similarity=0.059 Sum_probs=114.5
Q ss_pred eeEEEEe--cCC-EEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc
Q 013184 193 QVSTLAV--RDN-LLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF 269 (448)
Q Consensus 193 ~i~~l~~--~~~-~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~ 269 (448)
.++.|++ +++ ++++...++.|...++. .... ..+......-.-.+.+ .+++. ++++.-.++.+.++++...
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~--~~i~l~g~~D~EGIa~--~~~g~-~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLI--RTIPLDFVKDLETIEY--IGDNQ-FVISDERDYAIYVISLTPN 101 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEE--EEEECSSCSSEEEEEE--CSTTE-EEEEETTTTEEEEEEECTT
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEE--EEEecCCCCChHHeEE--eCCCE-EEEEECCCCcEEEEEcCCC
Confidence 4788888 344 55557788888888876 3332 2222222223445555 45553 5555556678888887543
Q ss_pred e---EEEEee-------cCCCeeEEEECCCCCEEEEEecCCcEEEEECC---CCceeEeee-------cCCCcEEEEEEc
Q 013184 270 Q---LSKHFS-------FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQ---TGKAIMPLC-------GHLDFSFASAWH 329 (448)
Q Consensus 270 ~---~~~~~~-------~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~---~~~~~~~l~-------~h~~~v~~~~~~ 329 (448)
. .+.... .......++|+|.++.|+++.......||... ....+..+. .+...+.+++++
T Consensus 102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d 181 (255)
T 3qqz_A 102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFN 181 (255)
T ss_dssp CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEc
Confidence 3 222222 23345899999998888777765554554443 111222221 123456789999
Q ss_pred CCC-CEEEEEeCCCcEEEEEccCCCcceEEEccCC---------CCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 013184 330 PDG-RIFATGNQDKTCRVWDVRNLSKSVAVLKGNL---------GAIRSIRFTSDGNFMAMAEPADFVHVYDA 392 (448)
Q Consensus 330 p~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---------~~v~~l~~sp~g~~l~s~~~d~~v~vwd~ 392 (448)
|.. ++++.+...+.+.++|.. ++.+..+.-.. ...-.|+|.++|+..++ +..+.+++|.-
T Consensus 182 p~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 182 QQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp TTTTEEEEEETTTTEEEEECTT--CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred CCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 954 455556667778889875 45555543321 25678999999985555 55567887764
No 286
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.99 E-value=0.003 Score=62.20 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=120.3
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEe-------CCCCCeeEEEEeCCC------cEEEEecC
Q 013184 201 DNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYN-------SPSGGIHFMASNNDC------GVRDFDME 267 (448)
Q Consensus 201 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~l~s~s~dg------~v~iwd~~ 267 (448)
++++++-...+.|++.++....+... .............+.+ ++++..++++...++ .|.+++..
T Consensus 152 ~~Lyv~~~~~~~i~~ID~~~~~v~~l--~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~ 229 (496)
T 3kya_A 152 DHLYICYDGHKAIQLIDLKNRMLSSP--LNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRN 229 (496)
T ss_dssp EEEEEEEETEEEEEEEETTTTEEEEE--ECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECC
T ss_pred CEEEEEECCCCeEEEEECCCCEEEEE--EccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecC
Confidence 34555555456777777766544322 2222222223445566 778874455444432 26666543
Q ss_pred C-ceEE-----EEeecCCCeeEEEECC-CCCEEEEEecCCcEEEEECC-------CCce-----------eEee-e-cCC
Q 013184 268 R-FQLS-----KHFSFPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQ-------TGKA-----------IMPL-C-GHL 320 (448)
Q Consensus 268 ~-~~~~-----~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~-------~~~~-----------~~~l-~-~h~ 320 (448)
. ++.. ..+..-.....++++| ++.++++-..++.|..+|+. ++.. ...+ . +..
T Consensus 230 ~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~ 309 (496)
T 3kya_A 230 ADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADP 309 (496)
T ss_dssp TTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSS
T ss_pred CCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCC
Confidence 3 2221 1222112345778999 45555556677889999987 5543 1121 1 223
Q ss_pred CcEEEEEEcCCCCEEEEE-eCCCcEEEEEccCCCcce---EEEccC---C------------CCeE-EEEEc-------C
Q 013184 321 DFSFASAWHPDGRIFATG-NQDKTCRVWDVRNLSKSV---AVLKGN---L------------GAIR-SIRFT-------S 373 (448)
Q Consensus 321 ~~v~~~~~~p~g~~l~s~-~~d~~i~iwd~~~~~~~~---~~~~~~---~------------~~v~-~l~~s-------p 373 (448)
...+.++|+|+|++|+.+ .....|+.++.......+ ..+-+. . .... .+... +
T Consensus 310 ~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~ 389 (496)
T 3kya_A 310 SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEE 389 (496)
T ss_dssp SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSC
T ss_pred CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccC
Confidence 445789999999965554 456778887664312111 222221 1 1233 44554 4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeecC------------------------cCceEEEEEccCCCeEEEEEec
Q 013184 374 DGNFMAMAEPADFVHVYDAKNGFEKEQEIDF------------------------FGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 374 ~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~------------------------~~~v~~~~fspdg~~L~~~~~D 426 (448)
+|.+.++=.....|+.++ .+|. +.++.+. .....+|++++++..|+++-..
T Consensus 390 ~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~ 464 (496)
T 3kya_A 390 EYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQV 464 (496)
T ss_dssp CEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETT
T ss_pred CCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCC
Confidence 566666656678999998 5664 3333221 2347899999974456666443
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.96 E-value=0.0097 Score=62.46 Aligned_cols=216 Identities=8% Similarity=-0.053 Sum_probs=127.7
Q ss_pred CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc----eEEEEee-cCCCeeEE
Q 013184 210 QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF----QLSKHFS-FPWPVNHT 284 (448)
Q Consensus 210 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~----~~~~~~~-~~~~v~~~ 284 (448)
...|+..++....... +... ...+.++.+ .+.++.++++-...+.|+.+++... .....+. .......|
T Consensus 403 ~~~Ir~i~l~~~~~~~---l~~~-~~~~~gl~~--d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GL 476 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTS---LIPN-LRNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 476 (791)
T ss_dssp BSSEEEECTTSCCCEE---EECS-CSSEEEEEE--ETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred ccceeEeeccCCccee---eecC-CCceEEEee--cccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCccee
Confidence 3556777776554321 2112 222334444 6656656677667788999988753 2222333 34557789
Q ss_pred EECCCCCEEEEE-ecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeC--CCcEEEEEccCCCcceEEEcc
Q 013184 285 SLSPDGKLLVIV-GDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ--DKTCRVWDVRNLSKSVAVLKG 361 (448)
Q Consensus 285 ~~sp~~~~l~~~-~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~ 361 (448)
++.+.++.|+.+ ...+.|.+.++........+.........|+++|.+.+|+.... .+.|...++.. ......+..
T Consensus 477 AvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG-~~~~~lv~~ 555 (791)
T 3m0c_C 477 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTE 555 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECS
T ss_pred eeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC-CceEEEEeC
Confidence 999877655554 56778999998755444444445566889999997655555543 26788888753 233333334
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeeeeec--CcCceEEEEEccCCCeEEEEEecCCcceEEEEe
Q 013184 362 NLGAIRSIRFTSDGNFMAMAEP-ADFVHVYDAKNGFEKEQEID--FFGEISGMTFSPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 362 ~~~~v~~l~~sp~g~~l~s~~~-d~~v~vwd~~~~~~~~~~~~--~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~ 436 (448)
.....+.|++++.+..|..+.. .+.|..+++........+.. ......+|++ ++..|+.+-+. .+.+....
T Consensus 556 ~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~--~~~I~~~d 629 (791)
T 3m0c_C 556 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDII--NEAIFSAN 629 (791)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETT--TTEEEEEE
T ss_pred CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECC--CCEEEEEe
Confidence 4467889999987777777654 46899999865443333322 1234556666 45577776543 24444443
No 288
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.93 E-value=4.2e-05 Score=79.60 Aligned_cols=213 Identities=8% Similarity=-0.051 Sum_probs=117.9
Q ss_pred EEEEe--cCCE-EEEEeCCCeEEEEEcCCC----CceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecC
Q 013184 195 STLAV--RDNL-LIAGGFQGELICKYLDQP----GVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDME 267 (448)
Q Consensus 195 ~~l~~--~~~~-lvsg~~dg~i~vw~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~ 267 (448)
..|++ .++. +++-...+.|..+++... ... .+.......+..+++ .+.++.++++-...+.|.++++.
T Consensus 409 ~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~---~~i~~~~~~P~glav--D~~~g~LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 409 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD---TVISRDIQAPDGLAV--DWIHSNIYWTDSVLGTVSVADTK 483 (699)
T ss_dssp CCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCC---CBCCSCC--CCCEEC--CCSSSBCEECCTTTSCEEEEBSS
T ss_pred EEEccccccCeEEEEecCCCeEEEEecCCCCCCcceE---EEEeCCCCCcceEEE--EeeCCcEEEEeccCCeEEEEecC
Confidence 34455 3444 444456678888888751 111 111111112234444 54455566666667889999988
Q ss_pred CceEEEEee-cCCCeeEEEECCCCCEEEEEec--CCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCE-EEEEeCCCc
Q 013184 268 RFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGD--NPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRI-FATGNQDKT 343 (448)
Q Consensus 268 ~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~--d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~-l~s~~~d~~ 343 (448)
.......+. .......+++.|.+..|+.+.. .+.|..+++........+.........|+|+|++.. +++-...+.
T Consensus 484 g~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~ 563 (699)
T 1n7d_A 484 GVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 563 (699)
T ss_dssp SCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTE
T ss_pred CCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCe
Confidence 665444443 2345678999996665555442 267777766432222222222344567999997554 444455678
Q ss_pred EEEEEccCCCcceEEEcc---CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEcc
Q 013184 344 CRVWDVRNLSKSVAVLKG---NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSP 415 (448)
Q Consensus 344 i~iwd~~~~~~~~~~~~~---~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fsp 415 (448)
|..+++.. .....+.. .......|++..+ .++++....+.|..++..++..+..+......+.+|++.+
T Consensus 564 I~~~d~dG--~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~~ 635 (699)
T 1n7d_A 564 ISSIDVNG--GNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFH 635 (699)
T ss_dssp EEEECSSS--SCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBCS
T ss_pred EEEEccCC--CceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEeC
Confidence 99999853 22233321 1223345566543 4444545667899999888876665543333455565443
No 289
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.92 E-value=0.011 Score=55.14 Aligned_cols=150 Identities=13% Similarity=0.145 Sum_probs=102.5
Q ss_pred CCeEEEEEcCCCCceeEEEeec------CCCCceeeEEEEeCCC-CCeeEEEEeCCCcEEEEec-------CCceEEEEe
Q 013184 210 QGELICKYLDQPGVSFCSRTTY------DENAITNAVEIYNSPS-GGIHFMASNNDCGVRDFDM-------ERFQLSKHF 275 (448)
Q Consensus 210 dg~i~vw~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~-~~~~l~s~s~dg~v~iwd~-------~~~~~~~~~ 275 (448)
+.+|+++.++.....+ ..+.. .....+..++++.+|. +..++++...+|.+..|++ -+.++++.+
T Consensus 98 ~n~l~vf~iDp~~~~l-~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTL-QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCCE-EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCce-eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 5789999885322221 12211 1114455688887875 4457888888999999988 345778888
Q ss_pred ecCCCeeEEEECCCCCEEEEEecCCcEEEEECC-----CCceeEeee-cCC-CcEEEEEE--cCCCC-EEEEEeC-CCcE
Q 013184 276 SFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQ-----TGKAIMPLC-GHL-DFSFASAW--HPDGR-IFATGNQ-DKTC 344 (448)
Q Consensus 276 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~-----~~~~~~~l~-~h~-~~v~~~~~--~p~g~-~l~s~~~-d~~i 344 (448)
.....+..+...+....|+++-.+..|..++.. +++.+..+. ++. ..+..|+. .++++ +|+++++ +.+.
T Consensus 177 ~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~ 256 (355)
T 3amr_A 177 KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSY 256 (355)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred cCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence 888899999999988999999998778778855 345555442 222 35777777 55666 6666664 6689
Q ss_pred EEEEccCCCcceEEEc
Q 013184 345 RVWDVRNLSKSVAVLK 360 (448)
Q Consensus 345 ~iwd~~~~~~~~~~~~ 360 (448)
.+||.....+.+..+.
T Consensus 257 ~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 257 AIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEESSTTCCEEEEEE
T ss_pred EEEECCCCCcEEEEEE
Confidence 9999964355555553
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.88 E-value=0.0037 Score=57.88 Aligned_cols=184 Identities=10% Similarity=0.084 Sum_probs=117.0
Q ss_pred eeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEE-eec-------CCCeeEEEE---CCCCCEEEEEec-------
Q 013184 237 TNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKH-FSF-------PWPVNHTSL---SPDGKLLVIVGD------- 298 (448)
Q Consensus 237 ~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~-------~~~v~~~~~---sp~~~~l~~~~~------- 298 (448)
..++.| .+....++++.-..++|..|+...+..... +.. ...+..+.| .|+++++++...
T Consensus 15 PE~~~w--d~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 15 PEDTIY--DRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CSCEEE--ETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred CcCccC--cCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 445555 555564555555789999999986654433 221 013579999 688777776431
Q ss_pred ------CCcEEEEECC---CCceeEeee--c-----------CCCcEEEEEEcCCCCEEEEEeCC-CcEEEEEccCCCcc
Q 013184 299 ------NPEGILVDSQ---TGKAIMPLC--G-----------HLDFSFASAWHPDGRIFATGNQD-KTCRVWDVRNLSKS 355 (448)
Q Consensus 299 ------d~~i~i~d~~---~~~~~~~l~--~-----------h~~~v~~~~~~p~g~~l~s~~~d-~~i~iwd~~~~~~~ 355 (448)
+..+..+|+. +++.+.... . -......++..++|+..++++.. +.|...+.. ++.
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd--G~~ 170 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD--GKT 170 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT--SCC
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC--CCE
Confidence 5679999999 787765443 1 11247889999999999988877 776666654 333
Q ss_pred eEEEc--c----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-eeee--c---CcCceEEE-EEccCCCeEEE
Q 013184 356 VAVLK--G----NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEK-EQEI--D---FFGEISGM-TFSPDTEALFI 422 (448)
Q Consensus 356 ~~~~~--~----~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~-~~~~--~---~~~~v~~~-~fspdg~~L~~ 422 (448)
+..+. . .....+.|+++|+|+.|++....+.|..+|+.+.... .... + .......| .--.+|+.|++
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV 250 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLV 250 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEE
Confidence 33321 1 1123678999999999999988999999998853320 1111 2 11224454 33347777565
Q ss_pred EE
Q 013184 423 GV 424 (448)
Q Consensus 423 ~~ 424 (448)
+.
T Consensus 251 ~~ 252 (334)
T 2p9w_A 251 GA 252 (334)
T ss_dssp EE
T ss_pred Ec
Confidence 54
No 291
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.87 E-value=0.0012 Score=64.38 Aligned_cols=150 Identities=15% Similarity=0.174 Sum_probs=91.0
Q ss_pred eeEEEEeCCC--CCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecC----Cc-EEEEECCCC
Q 013184 238 NAVEIYNSPS--GGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDN----PE-GILVDSQTG 310 (448)
Q Consensus 238 ~~v~~~~~~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~-i~i~d~~~~ 310 (448)
..+.+ +|+ ++ .|+.+...+.|+.+++.+++.............++++++|+ |+++... .. +...+...+
T Consensus 142 ~gvav--d~~s~~g-~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 142 WRMMF--DPNSNYD-DLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CEEEE--CTTTTTC-EEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred ceEEE--ccccCCC-EEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 34544 774 34 34444434899999998888776655556689999999999 5444432 12 333332222
Q ss_pred ce-eEeeecCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCCcceEEE-c-cCCCCeEEEEEcCCCCEEEEEe-CCC
Q 013184 311 KA-IMPLCGHLDFSFASAWHP-DGRIFATGNQDKTCRVWDVRNLSKSVAVL-K-GNLGAIRSIRFTSDGNFMAMAE-PAD 385 (448)
Q Consensus 311 ~~-~~~l~~h~~~v~~~~~~p-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~-~-~~~~~v~~l~~sp~g~~l~s~~-~d~ 385 (448)
.. ...+. .......++++| +|.++++-..++.|+.++... +.....+ . +....-..++|+|+|++|..+. ..+
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~-g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT-GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT-CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC-CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 11 01121 223345688999 777666666778899998864 3331222 2 1122334699999999666655 457
Q ss_pred eEEEEECC
Q 013184 386 FVHVYDAK 393 (448)
Q Consensus 386 ~v~vwd~~ 393 (448)
.|+.++..
T Consensus 296 ~I~~~~~d 303 (433)
T 4hw6_A 296 CIYRVDYN 303 (433)
T ss_dssp EEEEEEBC
T ss_pred EEEEEeCC
Confidence 89998865
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.85 E-value=0.0075 Score=61.62 Aligned_cols=198 Identities=6% Similarity=0.011 Sum_probs=111.6
Q ss_pred eEEEEe--cCC-EEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 194 VSTLAV--RDN-LLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 194 i~~l~~--~~~-~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
..+|++ .++ ++++-...+.|..++++..... ...+ ...-..+..+++ .+.+++++++-...+.|.+.++....
T Consensus 42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~-~~v~-~~~~~~P~GlAv--D~~~~~ly~~d~~~~~I~v~~~dG~~ 117 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV-QNVV-VSGLLSPDGLAC--DWLGEKLYWTDSETNRIEVSNLDGSL 117 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC-----C-EEEE-CSSCSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce-EEEE-eCCCCCcCeEEE--EecCCEEEEEeCCCCEEEEEECCCCC
Confidence 456666 344 4455555778888887654311 1112 122234556666 66566677777778899999997654
Q ss_pred EEEEe-ecCCCeeEEEECCCCCEEEEEec--CCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEe-CCCcEEE
Q 013184 271 LSKHF-SFPWPVNHTSLSPDGKLLVIVGD--NPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGN-QDKTCRV 346 (448)
Q Consensus 271 ~~~~~-~~~~~v~~~~~sp~~~~l~~~~~--d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~-~d~~i~i 346 (448)
....+ ..-.....+++.|.+..|+.... .+.|...++..................+++++++..|+.+. ..+.|..
T Consensus 118 ~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~ 197 (619)
T 3s94_A 118 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK 197 (619)
T ss_dssp CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEE
Confidence 33333 23445779999997666655542 45676667654333323333455678999999766555554 4567888
Q ss_pred EEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcee
Q 013184 347 WDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAE-PADFVHVYDAKNGFEK 398 (448)
Q Consensus 347 wd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~-~d~~v~vwd~~~~~~~ 398 (448)
.++.. ........+.......|++..+ .|..+. ..+.|...|..+++..
T Consensus 198 ~~~dG-~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 198 SNLDG-TNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp ESSSC-CEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCC
T ss_pred ecCCC-CccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCccc
Confidence 88753 2222222212223346677654 454443 5578999998777544
No 293
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.85 E-value=0.034 Score=56.86 Aligned_cols=217 Identities=10% Similarity=-0.005 Sum_probs=135.5
Q ss_pred CCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEEC
Q 013184 209 FQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLS 287 (448)
Q Consensus 209 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~s 287 (448)
....|+..+++...... .+.. .+....+.+.+.+.++.++++-...+.|+.+++........+. .......+++.
T Consensus 13 ~~~~I~~i~l~~~~~~~--~~~~--~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD 88 (628)
T 4a0p_A 13 RRADIRRISLETNNNNV--AIPL--TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVD 88 (628)
T ss_dssp ETTEEEEEESSCTTCEE--ECCC--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEE
T ss_pred eCCcEEEEECCCCCcce--EEEc--CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEE
Confidence 56778888887655321 1111 1122334444477777677777778999999987654444444 22457789998
Q ss_pred CCCCEEEEE-ecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeC--CCcEEEEEccCCCcceEEEccCCC
Q 013184 288 PDGKLLVIV-GDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ--DKTCRVWDVRNLSKSVAVLKGNLG 364 (448)
Q Consensus 288 p~~~~l~~~-~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~ 364 (448)
+.+..|+.+ ...+.|.+.++........+.........++++|....|+.... .+.|...++. +.....+.....
T Consensus 89 ~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d--G~~~~~l~~~~~ 166 (628)
T 4a0p_A 89 WLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD--GSERTTLVPNVG 166 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEECSCS
T ss_pred eCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC--CCceEEEECCCC
Confidence 765555544 45678999998654433223344566789999995555555543 4567777764 333444434556
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEEEe
Q 013184 365 AIRSIRFTSDGNFMAMAE-PADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 365 ~v~~l~~sp~g~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~ 436 (448)
..+.|+++++++.|..+. ..+.|..+|+..... ..+........++++.. ..|+.+.+. .+.+....
T Consensus 167 ~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~--~~ly~tD~~--~~~I~~~d 234 (628)
T 4a0p_A 167 RANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ--DYIYWTDWS--RRSIERAN 234 (628)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET--TEEEEEETT--TTEEEEEE
T ss_pred CcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC--CEEEEecCC--CCEEEEEE
Confidence 778999999877777765 457899999865444 33334445677888864 467766543 24444444
No 294
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.82 E-value=0.00074 Score=69.80 Aligned_cols=94 Identities=18% Similarity=0.046 Sum_probs=56.5
Q ss_pred CCCEEEEEecCC-----------cEEEEECCCCceeEee--ecCCCc-EEEEEEcCCCCEEEEEeCC-----------Cc
Q 013184 289 DGKLLVIVGDNP-----------EGILVDSQTGKAIMPL--CGHLDF-SFASAWHPDGRIFATGNQD-----------KT 343 (448)
Q Consensus 289 ~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~l--~~h~~~-v~~~~~~p~g~~l~s~~~d-----------~~ 343 (448)
+++++++|+.++ .+.+||..+.+..... ..+... -.+++..|+|++++.|+.+ ..
T Consensus 410 ~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~ 489 (656)
T 1k3i_A 410 KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFT 489 (656)
T ss_dssp TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCC
T ss_pred CCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccc
Confidence 567777777432 5778888776644332 112222 2345667899999999854 46
Q ss_pred EEEEEccCCCcc--eEEEccCCCCeEEEEEcCCCCEEEEEeC
Q 013184 344 CRVWDVRNLSKS--VAVLKGNLGAIRSIRFTSDGNFMAMAEP 383 (448)
Q Consensus 344 i~iwd~~~~~~~--~~~~~~~~~~v~~l~~sp~g~~l~s~~~ 383 (448)
+.+||..+ .+- +..+........+..+.|+|+.++.|+.
T Consensus 490 v~~ydp~t-~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 490 PEIYVPEQ-DTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CEEEEGGG-TEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred eEEEcCCC-CceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 89999865 221 1111111222334556799999999985
No 295
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.81 E-value=0.016 Score=54.66 Aligned_cols=221 Identities=14% Similarity=0.115 Sum_probs=114.7
Q ss_pred EEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEee--cCCCCceeeEEEEeCCC---CCeeEEEEeCC-----CcEE
Q 013184 195 STLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTT--YDENAITNAVEIYNSPS---GGIHFMASNND-----CGVR 262 (448)
Q Consensus 195 ~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~---~~~~l~s~s~d-----g~v~ 262 (448)
..|++ +++++++ ...|.|.+++ + ........+. .........+. ++|+ +..++++-... ..|.
T Consensus 34 ~~ia~~pdG~l~V~-e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia--~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 34 WALAFLPDGGMLIA-ERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLA--LHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp EEEEECTTSCEEEE-ETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEE--ECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred eEEEEcCCCeEEEE-eCCCeEEEEE-C-CCccEeecceEeecCCCCceeEE--ECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 56666 6665554 5669988887 2 2211111111 11122334444 4887 55444444432 6788
Q ss_pred EEecCCce------EEEEeec----CCCeeEEEECCCCCEEEEEecC-------------CcEEEEECCCC---------
Q 013184 263 DFDMERFQ------LSKHFSF----PWPVNHTSLSPDGKLLVIVGDN-------------PEGILVDSQTG--------- 310 (448)
Q Consensus 263 iwd~~~~~------~~~~~~~----~~~v~~~~~sp~~~~l~~~~~d-------------~~i~i~d~~~~--------- 310 (448)
.++....+ ++..+.. ......++|.|+|.+.++.+.. +.|.-++....
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 88876432 1111221 1234689999999776665432 45555555420
Q ss_pred ---ceeEe-eecCCCcEEEEEEcC-CCCEEEEEeCCCcE------EEEEccCCC-----------------cceEEEccC
Q 013184 311 ---KAIMP-LCGHLDFSFASAWHP-DGRIFATGNQDKTC------RVWDVRNLS-----------------KSVAVLKGN 362 (448)
Q Consensus 311 ---~~~~~-l~~h~~~v~~~~~~p-~g~~l~s~~~d~~i------~iwd~~~~~-----------------~~~~~~~~~ 362 (448)
..... ..++. ....++|+| +|.++++-.....+ .|.-+.... .++..+..|
T Consensus 189 ~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~ 267 (352)
T 2ism_A 189 RRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQG 267 (352)
T ss_dssp CTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred CCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCC
Confidence 01111 12232 346789999 67766554433331 233222211 233334323
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce------eeeeecCcCceEEEEEccCCCeEEEE
Q 013184 363 LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFE------KEQEIDFFGEISGMTFSPDTEALFIG 423 (448)
Q Consensus 363 ~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~------~~~~~~~~~~v~~~~fspdg~~L~~~ 423 (448)
.....++| .+|.++++.-..+.|...++..... ...+..-.+.+.++++.|||..+++.
T Consensus 268 -~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 268 -FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp -CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred -CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 34567777 4677666666667888887754321 12222334679999999999655544
No 296
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.78 E-value=0.022 Score=52.55 Aligned_cols=240 Identities=9% Similarity=0.029 Sum_probs=135.5
Q ss_pred eeeCCCCeEEEec---CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCC-----
Q 013184 139 VWSTSKHDVYLMS---HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQ----- 210 (448)
Q Consensus 139 ~~~~~~~~v~~~~---~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~d----- 210 (448)
+++.....||++. ++.|...+........+.+- .+.-|.++++.|+-....
T Consensus 20 ~~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~---------------------~~~~i~~~g~~Iyy~~~~~~~~~ 78 (302)
T 3s25_A 20 LFCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND---------------------TAMYINADKNYVYYVRNNNQKIT 78 (302)
T ss_dssp CEEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE---------------------EEEEEEECSSEEEEEEECC----
T ss_pred EEEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCC---------------------ceeeEEEcCCEEEEEECCCCccc
Confidence 4567778888875 45677777554444444322 356667777777666543
Q ss_pred ---------CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEE---eCCCcEEEEecCCceEEEEeecC
Q 013184 211 ---------GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMAS---NNDCGVRDFDMERFQLSKHFSFP 278 (448)
Q Consensus 211 ---------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~---s~dg~v~iwd~~~~~~~~~~~~~ 278 (448)
..|+..+++...... +... ....+ ++.++.+..+- .....|...++......+...+.
T Consensus 79 ~~~~~~~n~~~Iy~i~~dg~~~~~---l~~~---~~~~~----s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~ 148 (302)
T 3s25_A 79 SQTFFSYDRNSLCRIKRNGHGSTV---LDPD---PCIYA----SLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHY 148 (302)
T ss_dssp --CCSSCCSEEEEEEETTSCCCEE---EECS---CEEEE----EEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSC
T ss_pred ccceeccCCCeEEEEeCCCCcceE---eecC---CccEE----EEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCC
Confidence 356666666554321 2111 11122 45676555544 34456666677654444333333
Q ss_pred CCeeEEEECCCCCEEEEEec-CCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceE
Q 013184 279 WPVNHTSLSPDGKLLVIVGD-NPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVA 357 (448)
Q Consensus 279 ~~v~~~~~sp~~~~l~~~~~-d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~ 357 (448)
. ..++|+++.|+..+. ...|...++..+.....+. +... ..++|++.+|+-....+.-+|+-+...+....
T Consensus 149 ~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~ 220 (302)
T 3s25_A 149 L----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV 220 (302)
T ss_dssp C----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCE
T ss_pred c----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeE
Confidence 2 346778888887765 5678888877665443333 2222 23569898888766543234444433244455
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEec
Q 013184 358 VLKGNLGAIRSIRFTSDGNFMAMAEP--ADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 358 ~~~~~~~~v~~l~~sp~g~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D 426 (448)
.+.. ..+ ..|+|+|++|..+.. .+.|..-++... ....+.. +.+. ++++.+.+|+-.-+.
T Consensus 221 ~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~-~r~~l~~--~~~~--~i~i~~d~Iy~td~~ 282 (302)
T 3s25_A 221 VLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT-GFKELAK--GEFC--NINVTSQYVYFTDFV 282 (302)
T ss_dssp ECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC-CCEEEEE--SCEE--EEEECSSEEEEEETT
T ss_pred EEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC-ccEEeeC--Cccc--eEEEeCCEEEEEECC
Confidence 5543 233 347889998887643 356777776543 3333332 2233 456678888877654
No 297
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.71 E-value=0.031 Score=52.04 Aligned_cols=226 Identities=13% Similarity=0.064 Sum_probs=117.5
Q ss_pred eeEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeec-CCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce-
Q 013184 193 QVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTY-DENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ- 270 (448)
Q Consensus 193 ~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~- 270 (448)
.+.++.++++.+++++..|.|.. ..+ .+......... ........+.+ .+++ ..++ ++.++.|..- ...++
T Consensus 81 ~~~~i~~~~~~~~~~g~~g~i~~-S~D-gG~tW~~~~~~~~~~~~~~~i~~--~~~~-~~~~-~~~~g~v~~S-~DgG~t 153 (327)
T 2xbg_A 81 RFNSVSFQGNEGWIVGEPPIMLH-TTD-GGQSWSQIPLDPKLPGSPRLIKA--LGNG-SAEM-ITNVGAIYRT-KDSGKN 153 (327)
T ss_dssp EEEEEEEETTEEEEEEETTEEEE-ESS-TTSSCEECCCCTTCSSCEEEEEE--EETT-EEEE-EETTCCEEEE-SSTTSS
T ss_pred cEEEEEecCCeEEEEECCCeEEE-ECC-CCCCceECccccCCCCCeEEEEE--ECCC-CEEE-EeCCccEEEE-cCCCCC
Confidence 57777775555556666775543 222 22221111111 11122333333 3343 2444 4445654322 12222
Q ss_pred EEEEe-ecCCCeeEEEECCCCCEEEEEecCCcEEE-EEC--CCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 013184 271 LSKHF-SFPWPVNHTSLSPDGKLLVIVGDNPEGIL-VDS--QTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRV 346 (448)
Q Consensus 271 ~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i-~d~--~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~i 346 (448)
..... .....+..+.+.|++.+++++. .+.+.. .|. .+-+.+. ......+..+++.|+++.++ ++.+|.+++
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~ 229 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAF 229 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEE
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEE
Confidence 22222 2456788999999888776654 444443 332 2223321 23456788899999987664 456777777
Q ss_pred EEccCCCcceEEEc-c---CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeee---cCcCceEEEEEccCCCe
Q 013184 347 WDVRNLSKSVAVLK-G---NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEI---DFFGEISGMTFSPDTEA 419 (448)
Q Consensus 347 wd~~~~~~~~~~~~-~---~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~~v~~~~fspdg~~ 419 (448)
..... +..-..+. . +...+..+.+.+++..++++. ++.| .+....|+.-..+. .....+.++.|.+++.
T Consensus 230 s~~D~-G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~- 305 (327)
T 2xbg_A 230 SDPDN-SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ- 305 (327)
T ss_dssp EETTE-EEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-
T ss_pred ecCCC-CCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-
Confidence 64211 11111111 1 223588999999888777665 5655 44445554443333 1245678899986655
Q ss_pred EEEEEecCCcceEEEEe
Q 013184 420 LFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 420 L~~~~~D~~~~~ll~~~ 436 (448)
+++++.++ .++.+.
T Consensus 306 ~~~~G~~G---~i~~~~ 319 (327)
T 2xbg_A 306 GFILGQKG---ILLRYV 319 (327)
T ss_dssp EEEECSTT---EEEEEC
T ss_pred eEEEcCCc---eEEEEc
Confidence 55555564 455543
No 298
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.69 E-value=0.0073 Score=55.43 Aligned_cols=189 Identities=12% Similarity=0.157 Sum_probs=101.3
Q ss_pred EEEEecCCEEEEEeCC-----CeEEEEEcCCCC---ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC-----CcE
Q 013184 195 STLAVRDNLLIAGGFQ-----GELICKYLDQPG---VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND-----CGV 261 (448)
Q Consensus 195 ~~l~~~~~~lvsg~~d-----g~i~vw~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d-----g~v 261 (448)
.+...++.+++.|+.+ ..+.++++.+.. ......+...... .++.. .+ +.+++.|+.+ ..+
T Consensus 57 ~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~--~~~~~---~~-~~lyv~GG~~~~~~~~~~ 130 (301)
T 2vpj_A 57 ASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL--AGATT---LG-DMIYVSGGFDGSRRHTSM 130 (301)
T ss_dssp EEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS--CEEEE---ET-TEEEEECCBCSSCBCCEE
T ss_pred cEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc--eeEEE---EC-CEEEEEcccCCCcccceE
Confidence 3444588889999876 358888887766 4332222111111 12222 13 4466776643 358
Q ss_pred EEEecCCceEEEEeecCCC--eeEEEECCCCCEEEEEecC-----CcEEEEECCCCceeEe--eecCCCcEEEEEEcCCC
Q 013184 262 RDFDMERFQLSKHFSFPWP--VNHTSLSPDGKLLVIVGDN-----PEGILVDSQTGKAIMP--LCGHLDFSFASAWHPDG 332 (448)
Q Consensus 262 ~iwd~~~~~~~~~~~~~~~--v~~~~~sp~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--l~~h~~~v~~~~~~p~g 332 (448)
.+||+.+.+....-..+.+ -.+++. -++++++.|+.+ ..+.+||+.+.+-... +........++.+ ++
T Consensus 131 ~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~ 207 (301)
T 2vpj_A 131 ERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--ND 207 (301)
T ss_dssp EEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT
T ss_pred EEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CC
Confidence 8999988775544332211 112222 256777777654 4688999887754322 2111111122333 56
Q ss_pred CEEEEEeCC-----CcEEEEEccCCCcceEEEcc---CCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCc
Q 013184 333 RIFATGNQD-----KTCRVWDVRNLSKSVAVLKG---NLGAIRSIRFTSDGNFMAMAEPA-----DFVHVYDAKNGF 396 (448)
Q Consensus 333 ~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~---~~~~v~~l~~sp~g~~l~s~~~d-----~~v~vwd~~~~~ 396 (448)
++++.|+.+ ..+.+||+.+ .. -..+.. .......+.+ +++.++.|+.+ ..|.+||+.+..
T Consensus 208 ~i~v~GG~~~~~~~~~v~~yd~~~-~~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 208 HIYVVGGFDGTAHLSSVEAYNIRT-DS-WTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTT-TE-EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEEEeCCCCCcccceEEEEeCCC-Cc-EEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 777777654 4688999864 22 222221 1111122222 56777777654 367888987654
No 299
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.59 E-value=0.0047 Score=57.18 Aligned_cols=156 Identities=14% Similarity=0.064 Sum_probs=103.6
Q ss_pred CCCeeEEEECCCCCEEEEEe-cCCcEEEEECCCCceeEe-eec----CC--CcEEEEEE---cCCCCEEEEEe-------
Q 013184 278 PWPVNHTSLSPDGKLLVIVG-DNPEGILVDSQTGKAIMP-LCG----HL--DFSFASAW---HPDGRIFATGN------- 339 (448)
Q Consensus 278 ~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~~~~-l~~----h~--~~v~~~~~---~p~g~~l~s~~------- 339 (448)
.....+++|.+....+.+++ ..+.|..|+...+..... +.+ .. ..+..+.| .|+++++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 34456889988666666666 789999999876644332 221 11 13578999 68888877644
Q ss_pred ------CCCcEEEEEcc---CCCcceEEEc--c-----------CCCCeEEEEEcCCCCEEEEEeCC-CeEEEEECCCCc
Q 013184 340 ------QDKTCRVWDVR---NLSKSVAVLK--G-----------NLGAIRSIRFTSDGNFMAMAEPA-DFVHVYDAKNGF 396 (448)
Q Consensus 340 ------~d~~i~iwd~~---~~~~~~~~~~--~-----------~~~~v~~l~~sp~g~~l~s~~~d-~~v~vwd~~~~~ 396 (448)
.+..|..+|+. + ++.+.... . .......++..++|+.-++++.. +.|..++.. |+
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~t-g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~ 169 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSEN-SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GK 169 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTT-CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SC
T ss_pred cccccCCCCEEEEEcCCcCCC-CCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CC
Confidence 25779999997 4 44443322 1 11347899999999988888888 888888854 33
Q ss_pred eeeeee-c-----CcCceEEEEEccCCCeEEEEEecCCcceEEEEecc
Q 013184 397 EKEQEI-D-----FFGEISGMTFSPDTEALFIGVWDRTYGSLLQYNRC 438 (448)
Q Consensus 397 ~~~~~~-~-----~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~~~ 438 (448)
....+. . .....++|+++|+|..|++... -++|..++..
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~---~g~L~~fD~~ 214 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG---PRALTAFDVS 214 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS---SSSEEEEECS
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC---CCeEEEEcCC
Confidence 332221 1 1123779999999999888754 3666666643
No 300
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.58 E-value=0.028 Score=52.95 Aligned_cols=179 Identities=12% Similarity=0.121 Sum_probs=105.6
Q ss_pred CCCeEEEEEcCCCC-ceeEEEeecC----CCCceeeEEEEeCCCCCeeEEEEeC---CCcEEEEecCC--ce--EEEEee
Q 013184 209 FQGELICKYLDQPG-VSFCSRTTYD----ENAITNAVEIYNSPSGGIHFMASNN---DCGVRDFDMER--FQ--LSKHFS 276 (448)
Q Consensus 209 ~dg~i~vw~~~~~~-~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~s~s~---dg~v~iwd~~~--~~--~~~~~~ 276 (448)
.+|.|.++++++.. ......+... ..-.+..+.+....++..+|+++.. +.+|.+|++.. .. .+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 68999999987543 2222223221 1234566777555456545655543 45677776643 22 233333
Q ss_pred c--CCCeeEEEECCCCCEEEEEe-----------------cCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEE
Q 013184 277 F--PWPVNHTSLSPDGKLLVIVG-----------------DNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFAT 337 (448)
Q Consensus 277 ~--~~~v~~~~~sp~~~~l~~~~-----------------~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s 337 (448)
+ -...+.+.+.++|.+.++.. ..+.|..++. ++ +..+.......+.++|+||++.|+.
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEE
Confidence 2 24578999999998776643 1234555554 33 2233333456789999999987776
Q ss_pred Ee-CCCcEEEEEccCCCcc--eEEEccCCCCeEEEEEcC-CCCEEEEEeCCC-eEEEEE
Q 013184 338 GN-QDKTCRVWDVRNLSKS--VAVLKGNLGAIRSIRFTS-DGNFMAMAEPAD-FVHVYD 391 (448)
Q Consensus 338 ~~-~d~~i~iwd~~~~~~~--~~~~~~~~~~v~~l~~sp-~g~~l~s~~~d~-~v~vwd 391 (448)
+. ..+.|..|++...+.. ...+ ...+..-.+++.+ +|++.+++..++ .|..|+
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred EeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 65 4678999998642322 2233 2245667899999 599887665442 344444
No 301
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.52 E-value=0.03 Score=52.68 Aligned_cols=167 Identities=15% Similarity=0.134 Sum_probs=99.8
Q ss_pred CCCcEEEEecCC--ceEEEEeec--------CCCeeEEEECC--CCC-EEEEE-ec--CCcEEEEECCC--Cce--eEee
Q 013184 257 NDCGVRDFDMER--FQLSKHFSF--------PWPVNHTSLSP--DGK-LLVIV-GD--NPEGILVDSQT--GKA--IMPL 316 (448)
Q Consensus 257 ~dg~v~iwd~~~--~~~~~~~~~--------~~~v~~~~~sp--~~~-~l~~~-~~--d~~i~i~d~~~--~~~--~~~l 316 (448)
.+|.|.++|+.+ .+.. .+.. ......+.+.+ ++. .|+++ .. ...|.+|++.. +.. +..+
T Consensus 81 ~~G~I~~~d~~~~~~~~~-~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVS-ELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEE-ECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCCceE-EEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 689999999873 3322 2221 13556677655 454 34444 33 45677766543 222 2334
Q ss_pred ecC-CCcEEEEEEcCCCCEEEEEeC---C------------CcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEE
Q 013184 317 CGH-LDFSFASAWHPDGRIFATGNQ---D------------KTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAM 380 (448)
Q Consensus 317 ~~h-~~~v~~~~~~p~g~~l~s~~~---d------------~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s 380 (448)
.+. ....+.+++.++|++.++... | ..-++|-+.. ++ +..+.......+.++|||||++|..
T Consensus 160 ~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-~~-~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 160 RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-ND-VRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-TC-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-Ce-EEEeecCCcccCcceECCCCCEEEE
Confidence 332 245789999999987776541 1 2234444432 32 3333333455789999999998887
Q ss_pred Ee-CCCeEEEEECCC-Ccee-eeeecCcCceEEEEEcc-CCCeEEEEEec
Q 013184 381 AE-PADFVHVYDAKN-GFEK-EQEIDFFGEISGMTFSP-DTEALFIGVWD 426 (448)
Q Consensus 381 ~~-~d~~v~vwd~~~-~~~~-~~~~~~~~~v~~~~fsp-dg~~L~~~~~D 426 (448)
+. ..+.|+.|++.. +... .......+..-++++.+ +|.+.+++.++
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESC
T ss_pred EeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCC
Confidence 75 467999999863 3221 11223457789999999 59877766655
No 302
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.52 E-value=0.064 Score=50.58 Aligned_cols=223 Identities=14% Similarity=0.154 Sum_probs=116.3
Q ss_pred EEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEee--cCCCCceeeEEEEeCCC---CCeeEEEEeC---C----Cc
Q 013184 195 STLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTT--YDENAITNAVEIYNSPS---GGIHFMASNN---D----CG 260 (448)
Q Consensus 195 ~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~---~~~~l~s~s~---d----g~ 260 (448)
..|++ +++ |+++...|.|.+++.+ +......+. .........+ .++|+ +..++++-+. + ..
T Consensus 32 ~~ia~~pdG~-l~V~e~~g~I~~~d~~--G~~~~~~~~v~~~g~~g~~gi--a~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 32 WSIAPLGGGR-YLVTERPGRLVLISPS--GKKLVASFDVANVGEAGLLGL--ALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp EEEEEEETTE-EEEEETTTEEEEECSS--CEEEEEECCCCCSTTCSEEEE--EECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred eEEEEcCCCe-EEEEeCCCEEEEEeCC--CceEeeccceeecCCCceeeE--EeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 55665 666 4445566988888632 221111111 1111223344 44886 4444444432 3 56
Q ss_pred EEEEecCCc-------eE-EEEee--cCCCeeEEEECCCCCEEEEEecC-------------CcEEEEECCCC-------
Q 013184 261 VRDFDMERF-------QL-SKHFS--FPWPVNHTSLSPDGKLLVIVGDN-------------PEGILVDSQTG------- 310 (448)
Q Consensus 261 v~iwd~~~~-------~~-~~~~~--~~~~v~~~~~sp~~~~l~~~~~d-------------~~i~i~d~~~~------- 310 (448)
|..|+.... +. +..+. .......++|.|+|.+.++.+.. +.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 777776543 11 12222 11235689999999877765432 34555554321
Q ss_pred --ceeEeeecCCCcEEEEEEcC-CCCEEEEEeCCCc---EEEEEccC---------------CCcceEEEccCCCCeEEE
Q 013184 311 --KAIMPLCGHLDFSFASAWHP-DGRIFATGNQDKT---CRVWDVRN---------------LSKSVAVLKGNLGAIRSI 369 (448)
Q Consensus 311 --~~~~~l~~h~~~v~~~~~~p-~g~~l~s~~~d~~---i~iwd~~~---------------~~~~~~~~~~~~~~v~~l 369 (448)
..+. ..++.. ...++|+| +|+++++-..... |.+...-. ...++..+.........+
T Consensus 187 ~~~~i~-a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~ 264 (354)
T 3a9g_A 187 PNSPIW-SYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA 264 (354)
T ss_dssp TTCCEE-EECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred CCCcEE-EEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence 0111 223433 35799999 6776555433221 33322100 002333331123356788
Q ss_pred EEc-------CCCCEEEEEeCCCeEEEEECCCC-cee--eeee-cCcCceEEEEEccCCCeEEEEEe
Q 013184 370 RFT-------SDGNFMAMAEPADFVHVYDAKNG-FEK--EQEI-DFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 370 ~~s-------p~g~~l~s~~~d~~v~vwd~~~~-~~~--~~~~-~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
+|. .+|.++++.-..+.|...++... ... ..+. ...+.+.++++.|||. |+++.+
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~-lyv~~~ 330 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGG-ILISTS 330 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSC-EEEEEC
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCc-EEEEEe
Confidence 884 56777776666778999888753 221 2222 2246799999999995 555544
No 303
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.52 E-value=0.013 Score=53.72 Aligned_cols=187 Identities=11% Similarity=0.104 Sum_probs=98.5
Q ss_pred EEecCCEEEEEeCCC-----eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC-----cEEEEec
Q 013184 197 LAVRDNLLIAGGFQG-----ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC-----GVRDFDM 266 (448)
Q Consensus 197 l~~~~~~lvsg~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg-----~v~iwd~ 266 (448)
...++.+++.||.++ .+.+++..+........+...... .++.. -+ +.+++.|+.++ .+.+||+
T Consensus 58 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~---~~-~~iyv~GG~~~~~~~~~~~~~d~ 131 (302)
T 2xn4_A 58 VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST--LGAAV---LN-GLLYAVGGFDGSTGLSSVEAYNI 131 (302)
T ss_dssp EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS--CEEEE---ET-TEEEEEEEECSSCEEEEEEEEET
T ss_pred EEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc--eEEEE---EC-CEEEEEcCCCCCccCceEEEEeC
Confidence 344888999998764 477788776553322222111111 12222 13 34666666543 5778898
Q ss_pred CCceEEEEeecCCC--eeEEEECCCCCEEEEEec-------CCcEEEEECCCCceeEe--eecCCCcEEEEEEcCCCCEE
Q 013184 267 ERFQLSKHFSFPWP--VNHTSLSPDGKLLVIVGD-------NPEGILVDSQTGKAIMP--LCGHLDFSFASAWHPDGRIF 335 (448)
Q Consensus 267 ~~~~~~~~~~~~~~--v~~~~~sp~~~~l~~~~~-------d~~i~i~d~~~~~~~~~--l~~h~~~v~~~~~~p~g~~l 335 (448)
.+.+....-..+.+ -.+++. -++++++.|+. -..+.+||+.+.+-... +.........+.+ +++++
T Consensus 132 ~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy 208 (302)
T 2xn4_A 132 KSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLY 208 (302)
T ss_dssp TTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEE
T ss_pred CCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEE
Confidence 88775544332211 112222 25666677654 24588999887754322 2211111222233 56777
Q ss_pred EEEeCC-----CcEEEEEccCCCcceEEEccC---CCCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCc
Q 013184 336 ATGNQD-----KTCRVWDVRNLSKSVAVLKGN---LGAIRSIRFTSDGNFMAMAEPAD-----FVHVYDAKNGF 396 (448)
Q Consensus 336 ~s~~~d-----~~i~iwd~~~~~~~~~~~~~~---~~~v~~l~~sp~g~~l~s~~~d~-----~v~vwd~~~~~ 396 (448)
+.|+.+ ..+.+||+.+ . .-..+... ......+. .+++.++.|+.++ .|.+||+.+..
T Consensus 209 v~GG~~~~~~~~~~~~yd~~~-~-~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 209 AVGGHDGPLVRKSVEVYDPTT-N-AWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EECCBSSSSBCCCEEEEETTT-T-EEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EECCCCCCcccceEEEEeCCC-C-CEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 777654 3688999864 2 22222211 11111222 2667777776543 58999988764
No 304
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.50 E-value=0.007 Score=57.77 Aligned_cols=131 Identities=21% Similarity=0.286 Sum_probs=87.5
Q ss_pred CCcEEEEecCCceEEEEeecC----C-CeeEEEECCCCCEEEEEecCCcEEEEECCCCc------------eeEeeec--
Q 013184 258 DCGVRDFDMERFQLSKHFSFP----W-PVNHTSLSPDGKLLVIVGDNPEGILVDSQTGK------------AIMPLCG-- 318 (448)
Q Consensus 258 dg~v~iwd~~~~~~~~~~~~~----~-~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~------------~~~~l~~-- 318 (448)
++.||.-++.....-+.+..+ . .|..+..+|+|++||..+.. .|.|..+..+. ....+.-
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCC
Confidence 367777776633222333322 2 57889999999999998776 78887776321 0112221
Q ss_pred ----CCCcEEEEEEcCC---CCEEEEEeCCCcEEEEEccCCC-cceEEEcc---------CCCCeEEEEEcCCCCEEEEE
Q 013184 319 ----HLDFSFASAWHPD---GRIFATGNQDKTCRVWDVRNLS-KSVAVLKG---------NLGAIRSIRFTSDGNFMAMA 381 (448)
Q Consensus 319 ----h~~~v~~~~~~p~---g~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~---------~~~~v~~l~~sp~g~~l~s~ 381 (448)
...+|..+.|||- +..|++-..|++||+||+.... .+. .+.. ....|.+++|.++|-.|...
T Consensus 119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl 197 (452)
T 3pbp_A 119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCL 197 (452)
T ss_dssp CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEE
T ss_pred cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEE
Confidence 2567999999994 5689999999999999997522 233 3321 22468899999988766665
Q ss_pred e--CCCeEEEE
Q 013184 382 E--PADFVHVY 390 (448)
Q Consensus 382 ~--~d~~v~vw 390 (448)
+ ..|-|+-.
T Consensus 198 ~~t~~GDIYAl 208 (452)
T 3pbp_A 198 NTTEGGDIFAF 208 (452)
T ss_dssp ECTTSCEEEEE
T ss_pred ecCCCCCEEEE
Confidence 5 77877653
No 305
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.49 E-value=0.065 Score=49.86 Aligned_cols=217 Identities=12% Similarity=0.103 Sum_probs=113.9
Q ss_pred eeEEEEe-c-CCEEEEEeCCCeEEEEEcCCCCceeEEEeec--CCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC
Q 013184 193 QVSTLAV-R-DNLLIAGGFQGELICKYLDQPGVSFCSRTTY--DENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER 268 (448)
Q Consensus 193 ~i~~l~~-~-~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~ 268 (448)
.+.++.+ + +..++ .+..|.| ++..+... ........ ........+.+ .+ ...++ ++..+.|.. ....
T Consensus 37 ~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~-tW~~~~~~~~~~~~~~~~i~~--~~--~~~~~-~g~~g~i~~-S~Dg 107 (327)
T 2xbg_A 37 TILDMSFIDRHHGWL-VGVNATL-METRDGGQ-TWEPRTLVLDHSDYRFNSVSF--QG--NEGWI-VGEPPIMLH-TTDG 107 (327)
T ss_dssp CEEEEEESSSSCEEE-EETTTEE-EEESSTTS-SCEECCCCCSCCCCEEEEEEE--ET--TEEEE-EEETTEEEE-ESST
T ss_pred cEEEEEECCCCcEEE-EcCCCeE-EEeCCCCC-CCeECCCCCCCCCccEEEEEe--cC--CeEEE-EECCCeEEE-ECCC
Confidence 4788888 3 34555 5567765 33333222 11111111 12334455544 44 33444 455665544 2222
Q ss_pred ce---EEEEe-ecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEee-ecCCCcEEEEEEcCCCCEEEEEeCCCc
Q 013184 269 FQ---LSKHF-SFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPL-CGHLDFSFASAWHPDGRIFATGNQDKT 343 (448)
Q Consensus 269 ~~---~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l-~~h~~~v~~~~~~p~g~~l~s~~~d~~ 343 (448)
++ .+... ..+..+..+.+.+++..++++ .++.|.. ....|+.-..+ .+....+..+++.|++.+++.+...+.
T Consensus 108 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~ 185 (327)
T 2xbg_A 108 GQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSF 185 (327)
T ss_dssp TSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSE
T ss_pred CCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcE
Confidence 32 22211 133557778877666655544 4554432 22334433222 345567899999999988877755544
Q ss_pred EEEEEccCCCcceEE-EccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeee-c---CcCceEEEEEccCCC
Q 013184 344 CRVWDVRNLSKSVAV-LKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEI-D---FFGEISGMTFSPDTE 418 (448)
Q Consensus 344 i~iwd~~~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~-~---~~~~v~~~~fspdg~ 418 (448)
.+-+|-. +..-.. -......+..+.+.++++.+++ +.+|.+++.+...+.....+. . ....+.++++.|++.
T Consensus 186 ~~S~d~g--G~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~ 262 (327)
T 2xbg_A 186 YSTWEPG--QTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE 262 (327)
T ss_dssp EEEECTT--CSSCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC
T ss_pred EEEeCCC--CCceeECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE
Confidence 4444431 121111 1234567889999999986655 467877776533233322222 1 223588999998877
Q ss_pred eEEEE
Q 013184 419 ALFIG 423 (448)
Q Consensus 419 ~L~~~ 423 (448)
.++++
T Consensus 263 ~~~~g 267 (327)
T 2xbg_A 263 VWLAG 267 (327)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66654
No 306
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.49 E-value=0.016 Score=53.30 Aligned_cols=217 Identities=12% Similarity=0.052 Sum_probs=114.5
Q ss_pred CeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCC----CeEEEEEcCCCCceeEEE
Q 013184 153 FSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQ----GELICKYLDQPGVSFCSR 228 (448)
Q Consensus 153 ~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~d----g~i~vw~~~~~~~~~~~~ 228 (448)
..+..+|+.+..-..+-.+. . ......+...++.+++.||.+ ..+.++++.+........
T Consensus 24 ~~~~~~d~~~~~W~~~~~~p-----~-----------~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 24 QSCRYFNPKDYSWTDIRCPF-----E-----------KRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp TSEEEEETTTTEEEECCCCS-----C-----------CCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred ceEEEecCCCCCEecCCCCC-----c-----------ccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 45888888776555432211 1 011233444588889999865 567788887765433322
Q ss_pred eecCCCCceeeEEEEeCCCCCeeEEEEeCC------CcEEEEecCCceEEEEeecCC--CeeEEEECCCCCEEEEEec--
Q 013184 229 TTYDENAITNAVEIYNSPSGGIHFMASNND------CGVRDFDMERFQLSKHFSFPW--PVNHTSLSPDGKLLVIVGD-- 298 (448)
Q Consensus 229 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~-- 298 (448)
+....... ++.. - ++.+++.|+.+ ..+.+||+.+.+....-..+. .-.+++. -++++++.|+.
T Consensus 88 ~p~~r~~~--~~~~---~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~ 160 (306)
T 3ii7_A 88 PPTPRDSL--AACA---A-EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLG 160 (306)
T ss_dssp CSSCCBSC--EEEE---E-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEES
T ss_pred CCccccce--eEEE---E-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCC
Confidence 22111111 2222 1 34467777654 458899998877554432211 1112222 25666666653
Q ss_pred -------CCcEEEEECCCCceeEe--eecCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEEccCCC-cceEEEccCC
Q 013184 299 -------NPEGILVDSQTGKAIMP--LCGHLDFSFASAWHPDGRIFATGNQD-----KTCRVWDVRNLS-KSVAVLKGNL 363 (448)
Q Consensus 299 -------d~~i~i~d~~~~~~~~~--l~~h~~~v~~~~~~p~g~~l~s~~~d-----~~i~iwd~~~~~-~~~~~~~~~~ 363 (448)
-..+.+||+.+.+-... +.........+.+ ++++++.|+.+ ..+.+||+.+.. ..+..+....
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 238 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG 238 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB
T ss_pred CCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc
Confidence 34588999988754322 2111111122223 56777777653 358889986411 1111111111
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCc
Q 013184 364 GAIRSIRFTSDGNFMAMAEPA-----DFVHVYDAKNGF 396 (448)
Q Consensus 364 ~~v~~l~~sp~g~~l~s~~~d-----~~v~vwd~~~~~ 396 (448)
.....+.+ +++.++.|+.+ ..|.+||+.+.+
T Consensus 239 ~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 239 VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 22223333 67777888743 578999988754
No 307
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.44 E-value=0.0084 Score=59.04 Aligned_cols=146 Identities=12% Similarity=0.018 Sum_probs=90.9
Q ss_pred CeeEEEECC-CCCEEEEEec-CCcEEEEECCCCceeEeeec---CCCcEEEEEE-------cCCCCEEEEEeCCC-----
Q 013184 280 PVNHTSLSP-DGKLLVIVGD-NPEGILVDSQTGKAIMPLCG---HLDFSFASAW-------HPDGRIFATGNQDK----- 342 (448)
Q Consensus 280 ~v~~~~~sp-~~~~l~~~~~-d~~i~i~d~~~~~~~~~l~~---h~~~v~~~~~-------~p~g~~l~s~~~d~----- 342 (448)
....++|.| +...|+++.. .+.|+++|+.++.....+.. .......++| +++|++|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 357899998 3555555544 46799999888776544432 1235789999 99999666665543
Q ss_pred --cEEEEEccCCCcce-----EEEccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECC-------CCce----------
Q 013184 343 --TCRVWDVRNLSKSV-----AVLKGNLGAIRSIRFTSDG-NFMAMAEPADFVHVYDAK-------NGFE---------- 397 (448)
Q Consensus 343 --~i~iwd~~~~~~~~-----~~~~~~~~~v~~l~~sp~g-~~l~s~~~d~~v~vwd~~-------~~~~---------- 397 (448)
.|.+.+....+... ..+... .....++++|++ .++++-...+.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 25566533211111 222222 234578899954 545555577889999987 5543
Q ss_pred -eeeee--cCcCceEEEEEccCCCeEEEEEec
Q 013184 398 -KEQEI--DFFGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 398 -~~~~~--~~~~~v~~~~fspdg~~L~~~~~D 426 (448)
..++. ........|+|+|+|++|+++-..
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~ 330 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN 330 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCC
Confidence 11221 223457899999999988877443
No 308
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.44 E-value=0.00026 Score=73.68 Aligned_cols=167 Identities=11% Similarity=-0.043 Sum_probs=102.8
Q ss_pred CCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEe-cCCcEEEEECCC----CceeEeeecCCCcEEEEEEcCC
Q 013184 257 NDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVG-DNPEGILVDSQT----GKAIMPLCGHLDFSFASAWHPD 331 (448)
Q Consensus 257 ~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~----~~~~~~l~~h~~~v~~~~~~p~ 331 (448)
+...|+..++.+.+....+.....+..++|.+.+..|+.+. ..+.|+.+++.. ......+.........+++.+.
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 34678889998877665555445677899998776666654 557899998875 2222222222223456788754
Q ss_pred -CCEEEEEeCCCcEEEEEccCCCcceEEE-ccCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCceeeeeecCcCc
Q 013184 332 -GRIFATGNQDKTCRVWDVRNLSKSVAVL-KGNLGAIRSIRFTSDGNFMAMAEP--ADFVHVYDAKNGFEKEQEIDFFGE 407 (448)
Q Consensus 332 -g~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~l~~sp~g~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~~ 407 (448)
++++++-...+.|.++++.. ..+..+ .......+.|+++|.+.+|+.+.. .+.|.++++...............
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg--~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~ 541 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKG--VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW 541 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSS--CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSS
T ss_pred CCcEEEEeccCCeEEEEecCC--CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCC
Confidence 44445545567899998853 333333 323345678999997666655543 267888887543222112222356
Q ss_pred eEEEEEccCCCeEEEEEe
Q 013184 408 ISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 408 v~~~~fspdg~~L~~~~~ 425 (448)
..+|+|+|++..|+.+-.
T Consensus 542 PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 542 PNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp CCCEEECTTTCCEEEEET
T ss_pred ccEEEEeccCCEEEEEec
Confidence 789999999888887643
No 309
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.41 E-value=0.013 Score=54.12 Aligned_cols=224 Identities=15% Similarity=0.169 Sum_probs=112.8
Q ss_pred EEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeC----C---C----eEEE
Q 013184 147 VYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGF----Q---G----ELIC 215 (448)
Q Consensus 147 v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~----d---g----~i~v 215 (448)
+++.+...+..+|+.+.+-.. ..+..+.. .....+...++.+++.||. + . .+.+
T Consensus 7 l~~~GG~~~~~yd~~~~~W~~-~~~~~p~~--------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 71 (315)
T 4asc_A 7 IFMISEEGAVAYDPAANECYC-ASLSSQVP--------------KNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQ 71 (315)
T ss_dssp EEEEETTEEEEEETTTTEEEE-EECCCCSC--------------SSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEE
T ss_pred EEEEcCCceEEECCCCCeEec-CCCCCCCC--------------ccceEEEEECCEEEEEcCcccCCCCCccccccceEE
Confidence 444455678899987766543 33322111 1123333448889999984 1 1 2566
Q ss_pred EEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC--------CcEEEEecCCceEEEEeecCCC-eeEEEE
Q 013184 216 KYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND--------CGVRDFDMERFQLSKHFSFPWP-VNHTSL 286 (448)
Q Consensus 216 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d--------g~v~iwd~~~~~~~~~~~~~~~-v~~~~~ 286 (448)
++..+........+... ....++.. - ++.+++.|+.+ ..+.+||+.+.+....-..+.+ ....+.
T Consensus 72 ~d~~~~~W~~~~~~p~~--r~~~~~~~---~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 145 (315)
T 4asc_A 72 FDHLDSEWLGMPPLPSP--RCLFGLGE---A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL 145 (315)
T ss_dssp EETTTTEEEECCCBSSC--EESCEEEE---E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred ecCCCCeEEECCCCCcc--hhceeEEE---E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE
Confidence 77666543221111111 11111222 1 34466666632 4588999988765443322111 111122
Q ss_pred CCCCCEEEEEec------CCcEEEEECCCCceeE--eeecCCCcEEEEEEcCCCCEEEEEeCCC-----cEEEEEccCCC
Q 013184 287 SPDGKLLVIVGD------NPEGILVDSQTGKAIM--PLCGHLDFSFASAWHPDGRIFATGNQDK-----TCRVWDVRNLS 353 (448)
Q Consensus 287 sp~~~~l~~~~~------d~~i~i~d~~~~~~~~--~l~~h~~~v~~~~~~p~g~~l~s~~~d~-----~i~iwd~~~~~ 353 (448)
.-++++++.|+. -..+.+||+.+.+-.. .+........++.+ ++++++.|+.++ .+.+||+.+ .
T Consensus 146 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~-~ 222 (315)
T 4asc_A 146 SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITD-N 222 (315)
T ss_dssp EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTT-T
T ss_pred EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCC-C
Confidence 235667777765 2468899988765332 12111111122233 667777777654 478888864 2
Q ss_pred cceEEEcc---CCCCeEEEEEcCCCCEEEEEeCC--------------CeEEEEECCCCce
Q 013184 354 KSVAVLKG---NLGAIRSIRFTSDGNFMAMAEPA--------------DFVHVYDAKNGFE 397 (448)
Q Consensus 354 ~~~~~~~~---~~~~v~~l~~sp~g~~l~s~~~d--------------~~v~vwd~~~~~~ 397 (448)
.-..+.. .......+.+ +++.++.|+.+ ..|.+||+.+.+-
T Consensus 223 -~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 280 (315)
T 4asc_A 223 -KWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW 280 (315)
T ss_dssp -EEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred -eEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence 2222221 1111222222 56777777653 2477889877643
No 310
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.39 E-value=0.081 Score=48.67 Aligned_cols=202 Identities=12% Similarity=0.059 Sum_probs=121.2
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC-ceEEEEee-c
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER-FQLSKHFS-F 277 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~-~ 277 (448)
..+.+|.-. ...+.++++++........+. . ..+-|-|-.... +-+++ +..|+-|+++. ..+++.+. |
T Consensus 77 ~~~ViALra-g~~LQiFnletK~klks~~~~----e--~VvfWkWis~~~-L~lVT--~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 77 ASKVIALKA-GKTLQIFNIEMKSKMKAHTMT----D--DVTFWKWISLNT-VALVT--DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp SSSEEEEEE-TTEEEEEETTTTEEEEEEECS----S--CEEEEEECSSSE-EEEEE--SSEEEEEESSTTCCCEEEEECC
T ss_pred CccEEEEec-CCeEEEechHHhhhhcceecC----C--ccEEEEecCCCe-EEEEc--CCcEEEEcccCCCCCceeeecc
Confidence 445555444 678999999987654333331 1 233444444332 33333 35799999975 45666666 2
Q ss_pred ----CCCeeEEEECCCCCEEEEEec-------CCcEEEEECCCCceeEeeecCCCcEEEEEEcCC---CCEEEEEeC---
Q 013184 278 ----PWPVNHTSLSPDGKLLVIVGD-------NPEGILVDSQTGKAIMPLCGHLDFSFASAWHPD---GRIFATGNQ--- 340 (448)
Q Consensus 278 ----~~~v~~~~~sp~~~~l~~~~~-------d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~---g~~l~s~~~--- 340 (448)
...|-....+++.++++..+- .|.+.+|..+.+ .-+.++||......+....+ ..+|+.+..
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 225 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 225 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 456778888999998887652 367888886654 45667787654333322211 123444433
Q ss_pred CCcEEEEEccCC--Cc------ceEEEccC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceE
Q 013184 341 DKTCRVWDVRNL--SK------SVAVLKGN---LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEIS 409 (448)
Q Consensus 341 d~~i~iwd~~~~--~~------~~~~~~~~---~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~ 409 (448)
.+.++|.++... +. .+..+... ..-.-++..|+.-..+..-+.-|.|++||+.++.++..-.-....|.
T Consensus 226 g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF 305 (365)
T 2xzh_A 226 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 305 (365)
T ss_dssp EEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceE
Confidence 257999998542 11 11111111 12234678888888888889999999999999998876554344444
Q ss_pred EEE
Q 013184 410 GMT 412 (448)
Q Consensus 410 ~~~ 412 (448)
.-+
T Consensus 306 ~ta 308 (365)
T 2xzh_A 306 VTA 308 (365)
T ss_dssp EEE
T ss_pred Eec
Confidence 333
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.37 E-value=0.009 Score=54.80 Aligned_cols=226 Identities=12% Similarity=0.012 Sum_probs=112.2
Q ss_pred ecCCEEEEEe-CC-----CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC-----CcEEEEecC
Q 013184 199 VRDNLLIAGG-FQ-----GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND-----CGVRDFDME 267 (448)
Q Consensus 199 ~~~~~lvsg~-~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d-----g~v~iwd~~ 267 (448)
.++.+++.|+ .+ ..+.++++.+........+... .... ++.. . ++.+++.|+.+ ..+.+||+.
T Consensus 13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~-~~~~---~-~~~l~v~GG~~~~~~~~~~~~~d~~ 86 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRK-RRYV-ASVS---L-HDRIYVIGGYDGRSRLSSVECLDYT 86 (301)
T ss_dssp CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSC-CBSC-EEEE---E-TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChh-hccc-cEEE---E-CCEEEEEcCCCCCccCceEEEEECC
Confidence 3567778887 33 3677888776553221111111 1111 1211 1 24467777654 468899988
Q ss_pred Cce---EEEEee--cCCCeeEEEECCCCCEEEEEecC-----CcEEEEECCCCceeE--eeecCCCcEEEEEEcCCCCEE
Q 013184 268 RFQ---LSKHFS--FPWPVNHTSLSPDGKLLVIVGDN-----PEGILVDSQTGKAIM--PLCGHLDFSFASAWHPDGRIF 335 (448)
Q Consensus 268 ~~~---~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d-----~~i~i~d~~~~~~~~--~l~~h~~~v~~~~~~p~g~~l 335 (448)
+.+ ....-. .+..-.+++. .++++++.|+.+ ..+.+||+.+.+-.. .+........++.+ +++++
T Consensus 87 ~~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy 163 (301)
T 2vpj_A 87 ADEDGVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIY 163 (301)
T ss_dssp CCTTCCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEE
T ss_pred CCCCCeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEE
Confidence 765 433322 1111112222 256677777643 368889988775432 22211111122222 67777
Q ss_pred EEEeCC-----CcEEEEEccCCCcceEEEcc---CCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceeeeee
Q 013184 336 ATGNQD-----KTCRVWDVRNLSKSVAVLKG---NLGAIRSIRFTSDGNFMAMAEPA-----DFVHVYDAKNGFEKEQEI 402 (448)
Q Consensus 336 ~s~~~d-----~~i~iwd~~~~~~~~~~~~~---~~~~v~~l~~sp~g~~l~s~~~d-----~~v~vwd~~~~~~~~~~~ 402 (448)
+.|+.+ ..+.+||+.+ . .-..+.. .......+.+ +++.++.|+.+ ..|.+||+.+..-.....
T Consensus 164 v~GG~~~~~~~~~~~~~d~~~-~-~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 239 (301)
T 2vpj_A 164 CLGGYDGLNILNSVEKYDPHT-G-HWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS 239 (301)
T ss_dssp EECCBCSSCBCCCEEEEETTT-T-EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EECCCCCCcccceEEEEeCCC-C-cEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC
Confidence 777654 4588899864 2 2222211 1111122222 56777777653 468999998765332211
Q ss_pred cCcCceEEEEEccCCCeEEEEEecCCc--ceEEEEec
Q 013184 403 DFFGEISGMTFSPDTEALFIGVWDRTY--GSLLQYNR 437 (448)
Q Consensus 403 ~~~~~v~~~~fspdg~~L~~~~~D~~~--~~ll~~~~ 437 (448)
.........+..-+++.++.|+.++.. ..+..++.
T Consensus 240 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 240 MTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp CSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEET
T ss_pred CCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcC
Confidence 111111111222367777888766542 34444443
No 312
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.30 E-value=0.015 Score=53.35 Aligned_cols=225 Identities=12% Similarity=0.119 Sum_probs=112.7
Q ss_pred ecCCEEEEEeCC----CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC-----CcEEEEecCCc
Q 013184 199 VRDNLLIAGGFQ----GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND-----CGVRDFDMERF 269 (448)
Q Consensus 199 ~~~~~lvsg~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d-----g~v~iwd~~~~ 269 (448)
.++.+++.||.+ ..+.++++.+........+... ....++.. - ++.+++.|+.+ ..+.+||+.+.
T Consensus 14 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~---~-~~~lyv~GG~~~~~~~~~~~~~d~~~~ 87 (302)
T 2xn4_A 14 LPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSR--RCRAGMVY---M-AGLVFAVGGFNGSLRVRTVDSYDPVKD 87 (302)
T ss_dssp -CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSC--CBSCEEEE---E-TTEEEEESCBCSSSBCCCEEEEETTTT
T ss_pred CCCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcc--cccceEEE---E-CCEEEEEeCcCCCccccceEEECCCCC
Confidence 356677778764 3577888776653222111111 11112212 1 34467777654 35889999887
Q ss_pred eEEEEeecCCC--eeEEEECCCCCEEEEEecCC-----cEEEEECCCCceeEe--eecCCCcEEEEEEcCCCCEEEEEeC
Q 013184 270 QLSKHFSFPWP--VNHTSLSPDGKLLVIVGDNP-----EGILVDSQTGKAIMP--LCGHLDFSFASAWHPDGRIFATGNQ 340 (448)
Q Consensus 270 ~~~~~~~~~~~--v~~~~~sp~~~~l~~~~~d~-----~i~i~d~~~~~~~~~--l~~h~~~v~~~~~~p~g~~l~s~~~ 340 (448)
+....-..+.+ -.+++. -++++++.|+.++ .+.+||+.+.+-... +........++.+ ++++++.|+.
T Consensus 88 ~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 164 (302)
T 2xn4_A 88 QWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGY 164 (302)
T ss_dssp EEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCE
T ss_pred ceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCC
Confidence 75544332111 112222 2567777777553 577889887654322 2111111122222 5667776654
Q ss_pred C-------CcEEEEEccCCCcceEEE---ccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceeeeeecCc
Q 013184 341 D-------KTCRVWDVRNLSKSVAVL---KGNLGAIRSIRFTSDGNFMAMAEPA-----DFVHVYDAKNGFEKEQEIDFF 405 (448)
Q Consensus 341 d-------~~i~iwd~~~~~~~~~~~---~~~~~~v~~l~~sp~g~~l~s~~~d-----~~v~vwd~~~~~~~~~~~~~~ 405 (448)
+ ..+.+||+.+ .. -..+ .........+.+ ++++++.|+.+ ..+.+||+.+..-.. +....
T Consensus 165 ~~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~ 239 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATT-NE-WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ-VADMN 239 (302)
T ss_dssp ETTTTEECCCEEEEETTT-TE-EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEE-ECCCS
T ss_pred CCCCCccccEEEEEeCCC-Cc-EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEee-CCCCC
Confidence 2 3588899864 21 1122 111111222222 56777777654 369999988764332 22111
Q ss_pred -Cc-eEEEEEccCCCeEEEEEecCC--cceEEEEecc
Q 013184 406 -GE-ISGMTFSPDTEALFIGVWDRT--YGSLLQYNRC 438 (448)
Q Consensus 406 -~~-v~~~~fspdg~~L~~~~~D~~--~~~ll~~~~~ 438 (448)
.. -.+++ ..+++.++.|+.++. ...+..++..
T Consensus 240 ~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 240 MCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp SCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CccccCeEE-EECCEEEEECCcCCCcccccEEEEcCC
Confidence 11 11222 236778888877653 2345555443
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.27 E-value=0.14 Score=48.96 Aligned_cols=200 Identities=13% Similarity=0.050 Sum_probs=120.7
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC-ceEEEEee-c
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER-FQLSKHFS-F 277 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~-~ 277 (448)
..+.++.=. ..++.++++++........+.. . .+-|-|-... .|+-.+ +..|+-|+++. ..+++.|. |
T Consensus 76 ~~~iiALra-g~~lQiFnle~K~klks~~~~e---~---VvfWkWis~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 76 ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---D---VTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp SSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---C---CCEEEEEETT--EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred CCcEEEEec-CCeEEEEchHHhhhhcceecCC---C---ceEEEecCCC--eEEEEc-CCeeEEecccCCCCchhheecc
Confidence 444444443 6799999999876543333211 1 2223232222 233332 46799999974 35666776 2
Q ss_pred ----CCCeeEEEECCCCCEEEEEe-------cCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCC---CEEEEEeCC--
Q 013184 278 ----PWPVNHTSLSPDGKLLVIVG-------DNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDG---RIFATGNQD-- 341 (448)
Q Consensus 278 ----~~~v~~~~~sp~~~~l~~~~-------~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g---~~l~s~~~d-- 341 (448)
...|-....+++.++++..| -.|.+.+|..+.+ .-+.+.||......+....+. .+++.+...
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 224 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 224 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 45677888899999988665 2367888887654 355677886554333332111 244544443
Q ss_pred -CcEEEEEccCC--Cc------ceEEEccC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceE
Q 013184 342 -KTCRVWDVRNL--SK------SVAVLKGN---LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEIS 409 (448)
Q Consensus 342 -~~i~iwd~~~~--~~------~~~~~~~~---~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~ 409 (448)
+.++|.++... +. .+..+... ..-.-++..|+.-..+..-+.-|.|++||+.++.++..-.-....|.
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF 304 (494)
T 1bpo_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 304 (494)
T ss_dssp CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceE
Confidence 68999998542 11 11111111 12234788888888888889999999999999998866543333443
Q ss_pred E
Q 013184 410 G 410 (448)
Q Consensus 410 ~ 410 (448)
.
T Consensus 305 ~ 305 (494)
T 1bpo_A 305 V 305 (494)
T ss_dssp E
T ss_pred E
Confidence 3
No 314
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.27 E-value=0.0074 Score=55.71 Aligned_cols=229 Identities=12% Similarity=0.071 Sum_probs=115.0
Q ss_pred eEEEEecCCEEEEEeCC----CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeC----C-----Cc
Q 013184 194 VSTLAVRDNLLIAGGFQ----GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNN----D-----CG 260 (448)
Q Consensus 194 i~~l~~~~~~lvsg~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~----d-----g~ 260 (448)
-.++..++.+++.||.. ..+.+++..+........+.... .-.++.. - ++.+++.|+. + ..
T Consensus 18 ~~~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~~~~~~~---~-~~~lyv~GG~~~~~~~~~~~~~ 91 (308)
T 1zgk_A 18 SHAPKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPR--SGLAGCV---V-GGLLYAVGGRNNSPDGNTDSSA 91 (308)
T ss_dssp ---CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCC--BSCEEEE---E-TTEEEEECCEEEETTEEEECCC
T ss_pred ccccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccc--ccceEEE---E-CCEEEEECCCcCCCCCCeecce
Confidence 44555588888988853 36778887765533221111111 1112222 1 3346666664 2 46
Q ss_pred EEEEecCCceEEEEeecC---CCeeEEEECCCCCEEEEEecC-----CcEEEEECCCCceeEe--eecCCCcEEEEEEcC
Q 013184 261 VRDFDMERFQLSKHFSFP---WPVNHTSLSPDGKLLVIVGDN-----PEGILVDSQTGKAIMP--LCGHLDFSFASAWHP 330 (448)
Q Consensus 261 v~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--l~~h~~~v~~~~~~p 330 (448)
+.+||+.+.+....-..+ .....+.+ ++++++.|+.+ ..+.+||+.+.+-... +........++.+
T Consensus 92 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-- 167 (308)
T 1zgk_A 92 LDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-- 167 (308)
T ss_dssp EEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--
T ss_pred EEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--
Confidence 888999887654433211 11122222 56777776643 4688899887654322 2111111122333
Q ss_pred CCCEEEEEeCC-----CcEEEEEccCCCcceEEE---ccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCce
Q 013184 331 DGRIFATGNQD-----KTCRVWDVRNLSKSVAVL---KGNLGAIRSIRFTSDGNFMAMAEPA-----DFVHVYDAKNGFE 397 (448)
Q Consensus 331 ~g~~l~s~~~d-----~~i~iwd~~~~~~~~~~~---~~~~~~v~~l~~sp~g~~l~s~~~d-----~~v~vwd~~~~~~ 397 (448)
++++++.|+.+ ..+.+||+.+ . .-..+ .........+.+ +++.++.|+.+ ..+.+||+.+..-
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~-~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPER-N-EWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTT-T-EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCC-C-eEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence 56777777654 4588888864 2 11111 111111222333 56777777654 4699999887643
Q ss_pred eeeeecCc-C-ceEEEEEccCCCeEEEEEecCC--cceEEEEecc
Q 013184 398 KEQEIDFF-G-EISGMTFSPDTEALFIGVWDRT--YGSLLQYNRC 438 (448)
Q Consensus 398 ~~~~~~~~-~-~v~~~~fspdg~~L~~~~~D~~--~~~ll~~~~~ 438 (448)
.. +.... . .-.+++. -+++.++.|+.++. ...+..++..
T Consensus 244 ~~-~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 244 TF-VAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp EE-CCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred EE-CCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCC
Confidence 32 21111 1 1112222 26778888877653 3445555443
No 315
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.19 E-value=0.03 Score=51.39 Aligned_cols=222 Identities=13% Similarity=0.039 Sum_probs=112.2
Q ss_pred CCEEEEEeCC--CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC----CcEEEEecCCceEEEE
Q 013184 201 DNLLIAGGFQ--GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND----CGVRDFDMERFQLSKH 274 (448)
Q Consensus 201 ~~~lvsg~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d----g~v~iwd~~~~~~~~~ 274 (448)
+.+++.||.+ ..+.++|..+........+...... . ++.. - ++.+++.|+.+ ..+.+||+.+.+....
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~-~~~~---~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~ 85 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRD-A-ACVF---W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSK 85 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBS-C-EEEE---E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccce-e-EEEE---E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEEC
Confidence 4466667653 5677888776653322111111111 1 1111 1 34467777654 5688999988775544
Q ss_pred eecCCC---eeEEEECCCCCEEEEEecC------CcEEEEECCCCceeEe--eecCCCcEEEEEEcCCCCEEEEEeC---
Q 013184 275 FSFPWP---VNHTSLSPDGKLLVIVGDN------PEGILVDSQTGKAIMP--LCGHLDFSFASAWHPDGRIFATGNQ--- 340 (448)
Q Consensus 275 ~~~~~~---v~~~~~sp~~~~l~~~~~d------~~i~i~d~~~~~~~~~--l~~h~~~v~~~~~~p~g~~l~s~~~--- 340 (448)
-..+.+ ...+.+ ++++++.|+.+ ..+.+||..+.+-... +........++.+ ++++++.|+.
T Consensus 86 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~ 161 (306)
T 3ii7_A 86 LGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGN 161 (306)
T ss_dssp ECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESC
T ss_pred CCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCC
Confidence 332211 122222 56777777754 4688999888754322 2111111122222 5666676653
Q ss_pred ------CCcEEEEEccCCCcceEEEccC---CCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceeee--eecC
Q 013184 341 ------DKTCRVWDVRNLSKSVAVLKGN---LGAIRSIRFTSDGNFMAMAEPA-----DFVHVYDAKNGFEKEQ--EIDF 404 (448)
Q Consensus 341 ------d~~i~iwd~~~~~~~~~~~~~~---~~~v~~l~~sp~g~~l~s~~~d-----~~v~vwd~~~~~~~~~--~~~~ 404 (448)
-..+.+||+.+ . .-..+... ...-..+.+ ++++++.|+.+ ..|.+||+.+..-... +...
T Consensus 162 ~~~~~~~~~~~~yd~~~-~-~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 237 (306)
T 3ii7_A 162 NVSGRVLNSCEVYDPAT-E-TWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK 237 (306)
T ss_dssp TTTCEECCCEEEEETTT-T-EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC
T ss_pred CCcccccceEEEeCCCC-C-eEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC
Confidence 34588899865 2 22222211 111122222 56777776543 3689999887643221 1111
Q ss_pred cCceEEEEEccCCCeEEEEEecCC--cceEEEEecc
Q 013184 405 FGEISGMTFSPDTEALFIGVWDRT--YGSLLQYNRC 438 (448)
Q Consensus 405 ~~~v~~~~fspdg~~L~~~~~D~~--~~~ll~~~~~ 438 (448)
......+.+ +++.++.|+.++. ...+..++..
T Consensus 238 r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 238 GVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp BSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETT
T ss_pred ccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCC
Confidence 112222333 6778888876543 3445555443
No 316
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.17 E-value=0.039 Score=50.95 Aligned_cols=226 Identities=10% Similarity=0.114 Sum_probs=111.7
Q ss_pred eEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCC----C-------eEE
Q 013184 146 DVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQ----G-------ELI 214 (448)
Q Consensus 146 ~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~d----g-------~i~ 214 (448)
.|++.+...+..||+.+.+-.. ..+..+.. .....++..++.+++.||.. + .+.
T Consensus 17 ~i~~~GG~~~~~yd~~~~~W~~-~~~~~~~~--------------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~ 81 (318)
T 2woz_A 17 LILLVNDTAAVAYDPMENECYL-TALAEQIP--------------RNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFF 81 (318)
T ss_dssp EEEEECSSEEEEEETTTTEEEE-EEECTTSC--------------SSEEEEECSSSCEEEEESSCC-------CCCBEEE
T ss_pred hhhhccccceEEECCCCCceec-ccCCccCC--------------ccceEEEEECCEEEEECCcccCccccCCCccccEE
Confidence 4555566668899987766544 23221111 11223334488888998841 2 156
Q ss_pred EEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC-------CcEEEEecCCceEEEEeecCCCe--eEEE
Q 013184 215 CKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND-------CGVRDFDMERFQLSKHFSFPWPV--NHTS 285 (448)
Q Consensus 215 vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d-------g~v~iwd~~~~~~~~~~~~~~~v--~~~~ 285 (448)
+++..+........+...... .++.. -+ +.+++.|+.+ ..+.+||+.+.+....-..+.+. .+++
T Consensus 82 ~~d~~~~~W~~~~~~p~~r~~--~~~~~---~~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 155 (318)
T 2woz_A 82 QLDNVSSEWVGLPPLPSARCL--FGLGE---VD-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVI 155 (318)
T ss_dssp EEETTTTEEEECSCBSSCBCS--CEEEE---ET-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEE
T ss_pred EEeCCCCcEEECCCCCccccc--cceEE---EC-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEE
Confidence 667665543221111111111 12222 13 3466666643 35788899887755443322211 1222
Q ss_pred ECCCCCEEEEEec------CCcEEEEECCCCceeEe--eecCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEEccCC
Q 013184 286 LSPDGKLLVIVGD------NPEGILVDSQTGKAIMP--LCGHLDFSFASAWHPDGRIFATGNQD-----KTCRVWDVRNL 352 (448)
Q Consensus 286 ~sp~~~~l~~~~~------d~~i~i~d~~~~~~~~~--l~~h~~~v~~~~~~p~g~~l~s~~~d-----~~i~iwd~~~~ 352 (448)
. .++++++.|+. -..+.+||+.+.+-... +........++.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 156 ~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 156 S-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp E-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred E-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCC
Confidence 2 35667777764 24589999988754322 2111111122222 56777777653 24678888642
Q ss_pred C-cceEEEccCCCCeEEEEEcCCCCEEEEEeCC--------------CeEEEEECCCCce
Q 013184 353 S-KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA--------------DFVHVYDAKNGFE 397 (448)
Q Consensus 353 ~-~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d--------------~~v~vwd~~~~~~ 397 (448)
. ..+..+.........+. .++++++.|+.+ ..|.+||+.+.+-
T Consensus 233 ~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 290 (318)
T 2woz_A 233 KWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW 290 (318)
T ss_dssp CEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEE
T ss_pred eEEECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEe
Confidence 1 11111111111112222 256777776643 3578888877543
No 317
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.14 E-value=0.029 Score=51.68 Aligned_cols=186 Identities=17% Similarity=0.149 Sum_probs=96.9
Q ss_pred EEecCCEEEEEeC----C-----CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC-----CcEE
Q 013184 197 LAVRDNLLIAGGF----Q-----GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND-----CGVR 262 (448)
Q Consensus 197 l~~~~~~lvsg~~----d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d-----g~v~ 262 (448)
...++.+++.||. + ..+.++++.+........+...... .++.. -+ +.+++.|+.+ ..+.
T Consensus 67 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~---~~-~~iyv~GG~~~~~~~~~~~ 140 (308)
T 1zgk_A 67 CVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR--IGVGV---ID-GHIYAVGGSHGCIHHNSVE 140 (308)
T ss_dssp EEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT--CEEEE---ET-TEEEEECCEETTEECCCEE
T ss_pred EEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccc--cEEEE---EC-CEEEEEcCCCCCcccccEE
Confidence 3448888888887 3 3567777766553322111111111 12222 13 3466666533 3588
Q ss_pred EEecCCceEEEEeecCC---CeeEEEECCCCCEEEEEecC-----CcEEEEECCCCceeEe--eecCCCcEEEEEEcCCC
Q 013184 263 DFDMERFQLSKHFSFPW---PVNHTSLSPDGKLLVIVGDN-----PEGILVDSQTGKAIMP--LCGHLDFSFASAWHPDG 332 (448)
Q Consensus 263 iwd~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--l~~h~~~v~~~~~~p~g 332 (448)
+||+.+.+....-..+. .-.++.+ ++++++.|+.+ ..+.+||+.+.+-... +........++.+ ++
T Consensus 141 ~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~ 216 (308)
T 1zgk_A 141 RYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HN 216 (308)
T ss_dssp EEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT
T ss_pred EECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CC
Confidence 89998876554333211 1122222 56677777654 4688999887654321 1111111222333 66
Q ss_pred CEEEEEeCC-----CcEEEEEccCCCcceEEEc---cCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCc
Q 013184 333 RIFATGNQD-----KTCRVWDVRNLSKSVAVLK---GNLGAIRSIRFTSDGNFMAMAEPA-----DFVHVYDAKNGF 396 (448)
Q Consensus 333 ~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~---~~~~~v~~l~~sp~g~~l~s~~~d-----~~v~vwd~~~~~ 396 (448)
++++.|+.+ ..+.+||+.+ . .-..+. ........+.+ ++++++.|+.+ ..|.+||+.+.+
T Consensus 217 ~iyv~GG~~~~~~~~~v~~yd~~~-~-~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 217 CIYAAGGYDGQDQLNSVERYDVET-E-TWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTT-T-EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred EEEEEeCCCCCCccceEEEEeCCC-C-cEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 777777654 4588999864 2 112221 11111122222 56777777643 468888887754
No 318
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.03 E-value=0.052 Score=50.04 Aligned_cols=212 Identities=13% Similarity=0.049 Sum_probs=103.5
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeC-----C------CcEEEEecCCceE
Q 013184 203 LLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNN-----D------CGVRDFDMERFQL 271 (448)
Q Consensus 203 ~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~-----d------g~v~iwd~~~~~~ 271 (448)
+++.|+ ..+.+||..+..... .......... ..... ..++. +++.|+. . ..+.+||+.+.+.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~-~~~~~--~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 79 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKN-HVSLV--TKENQ-VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW 79 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSS-EEEEE--CTTCC-EEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCcc-ceEEE--EECCE-EEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence 455566 578889988776432 2221111111 11111 23444 6666662 1 1277889988775
Q ss_pred EEEeecCCCe--eEEEECCCCCEEEEEecC--------CcEEEEECCCCceeE--eeecCCCcEEEEEEcCCCCEEEEEe
Q 013184 272 SKHFSFPWPV--NHTSLSPDGKLLVIVGDN--------PEGILVDSQTGKAIM--PLCGHLDFSFASAWHPDGRIFATGN 339 (448)
Q Consensus 272 ~~~~~~~~~v--~~~~~sp~~~~l~~~~~d--------~~i~i~d~~~~~~~~--~l~~h~~~v~~~~~~p~g~~l~s~~ 339 (448)
...-..+.+- .+++.. ++++++.|+.+ ..+.+||..+.+-.. .+........++. -++++++.|+
T Consensus 80 ~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG 156 (315)
T 4asc_A 80 LGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGG 156 (315)
T ss_dssp EECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECC
T ss_pred EECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeC
Confidence 4432222111 122222 56666777632 458899998775322 1211111112222 3566777776
Q ss_pred C-C-----CcEEEEEccCCC-cceEEEccCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCceeeeeecCcCc
Q 013184 340 Q-D-----KTCRVWDVRNLS-KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD-----FVHVYDAKNGFEKEQEIDFFGE 407 (448)
Q Consensus 340 ~-d-----~~i~iwd~~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~-----~v~vwd~~~~~~~~~~~~~~~~ 407 (448)
. + ..+.+||+.+.. ..+..+......-..+.+ +++.++.|+.++ .+.+||+.+..-..........
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 234 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQER 234 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCC
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcc
Confidence 5 2 358889886411 111111111111122222 667777777554 5889998876433221111111
Q ss_pred -eEEEEEccCCCeEEEEEecC
Q 013184 408 -ISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 408 -v~~~~fspdg~~L~~~~~D~ 427 (448)
-.+++ .-+++.++.|+.++
T Consensus 235 ~~~~~~-~~~~~l~v~GG~~~ 254 (315)
T 4asc_A 235 SSLSLV-SLVGTLYAIGGFAT 254 (315)
T ss_dssp BSCEEE-EETTEEEEEEEEEE
T ss_pred cceeEE-EECCEEEEECCccc
Confidence 11222 23677888887753
No 319
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.97 E-value=0.067 Score=51.09 Aligned_cols=134 Identities=18% Similarity=0.162 Sum_probs=86.1
Q ss_pred CCCEEEEEecCCcEEEEECCCCceeEeeecC----CCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCC---c-------
Q 013184 289 DGKLLVIVGDNPEGILVDSQTGKAIMPLCGH----LDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLS---K------- 354 (448)
Q Consensus 289 ~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h----~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~---~------- 354 (448)
+|..++++-. +.||.-++..+..-+.+... -+.+..+..+|+|.+||..+.. .|.|-.+.... .
T Consensus 31 n~t~i~~a~~-n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQD-NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEET-TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEEC-CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccc
Confidence 3444443333 46666665543333344332 2246779999999999988654 68888876211 0
Q ss_pred -ceEEEcc------CCCCeEEEEEcCCC---CEEEEEeCCCeEEEEECCCCceeee-ee---------cCcCceEEEEEc
Q 013184 355 -SVAVLKG------NLGAIRSIRFTSDG---NFMAMAEPADFVHVYDAKNGFEKEQ-EI---------DFFGEISGMTFS 414 (448)
Q Consensus 355 -~~~~~~~------~~~~v~~l~~sp~g---~~l~s~~~d~~v~vwd~~~~~~~~~-~~---------~~~~~v~~~~fs 414 (448)
..+.+.- ...+|..+.|+|-| ..|++-..|+.|++||+.......+ +. .....|.+++|.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 1122221 24679999999954 6899999999999999986332111 11 112569999999
Q ss_pred cCCCeEEEEE
Q 013184 415 PDTEALFIGV 424 (448)
Q Consensus 415 pdg~~L~~~~ 424 (448)
++|-.|++.+
T Consensus 189 ~~~lTLYvl~ 198 (452)
T 3pbp_A 189 KDGLTLYCLN 198 (452)
T ss_dssp TTSSCEEEEE
T ss_pred CCCcEEEEEe
Confidence 9998888876
No 320
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.94 E-value=0.076 Score=45.97 Aligned_cols=175 Identities=12% Similarity=0.041 Sum_probs=97.9
Q ss_pred eEEEEeCCCcEEEEecCCce------EEEEeec--CCCeeEEEECCCCCEEEEEecCCcEEEEECCCCcee------Eee
Q 013184 251 HFMASNNDCGVRDFDMERFQ------LSKHFSF--PWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAI------MPL 316 (448)
Q Consensus 251 ~l~s~s~dg~v~iwd~~~~~------~~~~~~~--~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~------~~l 316 (448)
.|.+..+| +|+.=.+..+. ....+.. =..+..++|+|+|.+.++ .++.+.-.+..+.... ..+
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I 82 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKI 82 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEe
Confidence 45555566 55554443332 1122222 136789999999987776 7777777776552211 111
Q ss_pred e--cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCc------ceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 013184 317 C--GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSK------SVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVH 388 (448)
Q Consensus 317 ~--~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~ 388 (448)
- +-.. -.++.|.|+|.+.++ .||.|.-++..+... ....-...-..+..|.|.|+|.+-++. ++.++
T Consensus 83 G~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 83 GNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp ECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred ccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 1 1111 357899999998887 568887776532111 111122222468999999999877776 77754
Q ss_pred EEECCCCce-----eeeeec--CcCceEEEEEccCCCeEEEEEecCCcceEEEEecc
Q 013184 389 VYDAKNGFE-----KEQEID--FFGEISGMTFSPDTEALFIGVWDRTYGSLLQYNRC 438 (448)
Q Consensus 389 vwd~~~~~~-----~~~~~~--~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~~~ 438 (448)
-....++.. ..+... ......-+.|.|+|...++. + +.++....+
T Consensus 158 r~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~---g~~Y~~~~p 209 (236)
T 1tl2_A 158 KALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--G---GKFYEDYPP 209 (236)
T ss_dssp EECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--T---TEEEEESCC
T ss_pred ecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--C---CeEEecCCc
Confidence 443332211 111111 12234457799999877666 4 455554433
No 321
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.91 E-value=0.045 Score=51.41 Aligned_cols=226 Identities=12% Similarity=-0.004 Sum_probs=106.8
Q ss_pred EEecCCEEEEEeCCC-eEEEEEcCC--CCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeC-C---------CcEEE
Q 013184 197 LAVRDNLLIAGGFQG-ELICKYLDQ--PGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNN-D---------CGVRD 263 (448)
Q Consensus 197 l~~~~~~lvsg~~dg-~i~vw~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~-d---------g~v~i 263 (448)
...++.+++.||.++ .+.++++.. ........+.. ....-.++.. -+ +.+++.|+. + ..+.+
T Consensus 16 ~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~-~~R~~~~~~~---~~-~~lyv~GG~~~~~~~~~~~~~~v~~ 90 (357)
T 2uvk_A 16 AIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPG-GPRDQATSAF---ID-GNLYVFGGIGKNSEGLTQVFNDVHK 90 (357)
T ss_dssp EEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTT-CCCBSCEEEE---ET-TEEEEECCEEECTTSCEEECCCEEE
T ss_pred EEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCC-CcCccceEEE---EC-CEEEEEcCCCCCCCccceeeccEEE
Confidence 334888888887654 577777764 22221111110 1111112222 13 346666655 2 46889
Q ss_pred EecCCceEEEEeecC-CC-eeEEEECCCCCEEEEEecC---------------------------------------CcE
Q 013184 264 FDMERFQLSKHFSFP-WP-VNHTSLSPDGKLLVIVGDN---------------------------------------PEG 302 (448)
Q Consensus 264 wd~~~~~~~~~~~~~-~~-v~~~~~sp~~~~l~~~~~d---------------------------------------~~i 302 (448)
||+.+.+....-... .+ ....+...++++++.|+.+ ..+
T Consensus 91 yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (357)
T 2uvk_A 91 YNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFL 170 (357)
T ss_dssp EETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEE
T ss_pred EeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccE
Confidence 999887755433321 21 1222222467777888754 578
Q ss_pred EEEECCCCceeE--eeecCCCcEEEEEEcCCCCEEEEEeC------CCcEEEEEccCCCcceEEEcc---CCCCeEEEEE
Q 013184 303 ILVDSQTGKAIM--PLCGHLDFSFASAWHPDGRIFATGNQ------DKTCRVWDVRNLSKSVAVLKG---NLGAIRSIRF 371 (448)
Q Consensus 303 ~i~d~~~~~~~~--~l~~h~~~v~~~~~~p~g~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~---~~~~v~~l~~ 371 (448)
.+||+.+.+-.. .+......-.+++.. ++++++.|+. ...+.+||+......-..+.. ........+.
T Consensus 171 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~ 249 (357)
T 2uvk_A 171 LSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAG 249 (357)
T ss_dssp EEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEE
T ss_pred EEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEE
Confidence 899998775432 222111110122222 5666666653 234677776211111122211 1111111122
Q ss_pred cCCCCEEEEEeCC----------------------CeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 372 TSDGNFMAMAEPA----------------------DFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 372 sp~g~~l~s~~~d----------------------~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
..+++.++.|+.+ ..+.+||+.+..-...-..........+...+++.++.|+.+..
T Consensus 250 ~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~ 328 (357)
T 2uvk_A 250 ISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAG 328 (357)
T ss_dssp EETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGG
T ss_pred EECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCC
Confidence 2356777777632 25789998865432211111111112223357888899987754
No 322
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.89 E-value=0.041 Score=51.90 Aligned_cols=142 Identities=15% Similarity=0.116 Sum_probs=79.7
Q ss_pred CCeeEEEECCCCCEEEEEecCCcEEEEECCCCce--eEeee---cCCCcEEEEEEcCC---CCEEEEEeC-C-----CcE
Q 013184 279 WPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKA--IMPLC---GHLDFSFASAWHPD---GRIFATGNQ-D-----KTC 344 (448)
Q Consensus 279 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~--~~~l~---~h~~~v~~~~~~p~---g~~l~s~~~-d-----~~i 344 (448)
.....++|.|+|+++ ++...+.|.+++ .++. +..+. ........++++|+ +..|+.+.. . +.|
T Consensus 31 ~~P~~ia~~pdG~l~-V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGML-IAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEE-EEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEE-EEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 346799999999855 455668999998 4432 22221 12456789999998 554444433 2 567
Q ss_pred EEEEccCCC----cc-eEEEc---cCCCCeEEEEEcCCCCEEEEEeC-------------CCeEEEEECCCC--------
Q 013184 345 RVWDVRNLS----KS-VAVLK---GNLGAIRSIRFTSDGNFMAMAEP-------------ADFVHVYDAKNG-------- 395 (448)
Q Consensus 345 ~iwd~~~~~----~~-~~~~~---~~~~~v~~l~~sp~g~~l~s~~~-------------d~~v~vwd~~~~-------- 395 (448)
..|+..... +. +..+. ........++|.|+|.+.++.+. .+.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 777775311 11 12233 11123468999999976555332 246666665420
Q ss_pred ----ceeeee-ecCcCceEEEEEccCCCeEEEEE
Q 013184 396 ----FEKEQE-IDFFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 396 ----~~~~~~-~~~~~~v~~~~fspdg~~L~~~~ 424 (448)
.....+ .++ ....+++|+|+...|+++-
T Consensus 188 ~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d 220 (352)
T 2ism_A 188 GRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSE 220 (352)
T ss_dssp TCTTSCTTEEEECC-SEECCCEECTTTCCEEEEE
T ss_pred CCCCCCccEEEEcC-CCcccEEEECCCCCEEEEE
Confidence 011111 122 3467899999434455553
No 323
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.86 E-value=0.5 Score=48.10 Aligned_cols=195 Identities=7% Similarity=0.042 Sum_probs=113.2
Q ss_pred eEEEEec---CCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 194 VSTLAVR---DNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 194 i~~l~~~---~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
+.+|+++ +.++++-...+.|..++++...... +....-..+..+++ ...+++++++-+..+.|.+.++....
T Consensus 351 ~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~---v~~~~~~~p~GlAv--D~~~~~lY~tD~~~~~I~v~~~~G~~ 425 (619)
T 3s94_A 351 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQF---VVTAQIAHPDGIAV--DWVARNLYWTDTGTDRIEVTRLNGTM 425 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred cEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEE---EEECCCCCcCceEE--ecccCcEEEEeCCCCcEEEEeCCCCe
Confidence 5677773 4555555668888888887654322 11122223445655 44455566776677889999987543
Q ss_pred EEEEee-cCCCeeEEEECCCCCEEEEEe--cCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEe-CCCcEEE
Q 013184 271 LSKHFS-FPWPVNHTSLSPDGKLLVIVG--DNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGN-QDKTCRV 346 (448)
Q Consensus 271 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~--~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~-~d~~i~i 346 (448)
....+. .-...+.+++.|....|+.+. ..+.|...++..................+++++.+..|+.+. ..+.|..
T Consensus 426 ~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~ 505 (619)
T 3s94_A 426 RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEV 505 (619)
T ss_dssp CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEE
Confidence 322222 335678999999644555443 235676666653332222333456778999998766666554 4567888
Q ss_pred EEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCc
Q 013184 347 WDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAE-PADFVHVYDAKNGF 396 (448)
Q Consensus 347 wd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~-~d~~v~vwd~~~~~ 396 (448)
.++.. ......+.........|+... .+|..+. ..+.|...|..++.
T Consensus 506 ~~~dG-~~~~~~~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 506 MNTDG-TGRRVLVEDKIPHIFGFTLLG--DYVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EESSS-CCCEEEEECCCCSSCCEEEET--TEEEEECTTSSCEEEEESSSCC
T ss_pred EecCC-CceEEEeccCCCCcEEEEEEC--CEEEEeecCCCeEEEEEcCCCc
Confidence 88853 222222222222334556543 3555554 34577778877773
No 324
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.73 E-value=0.1 Score=49.17 Aligned_cols=141 Identities=13% Similarity=0.087 Sum_probs=79.3
Q ss_pred CCeeEEEECCCCCEEEEEecCCcEEEEECCCCc-eeEeee---cCCCcEEEEEEcCC---CCEEEEEeC----C----Cc
Q 013184 279 WPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGK-AIMPLC---GHLDFSFASAWHPD---GRIFATGNQ----D----KT 343 (448)
Q Consensus 279 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~-~~~~l~---~h~~~v~~~~~~p~---g~~l~s~~~----d----~~ 343 (448)
.....++|.|+|+ |+++...+.|++++ .+++ .+..+. ........++++|+ +..|+.+.. + ..
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 3467899999997 44556668999997 4554 222221 12356889999997 444444332 2 45
Q ss_pred EEEEEccCCC------cce-EEEcc-CCCCeEEEEEcCCCCEEEEEeC-------------CCeEEEEECCCCce-----
Q 013184 344 CRVWDVRNLS------KSV-AVLKG-NLGAIRSIRFTSDGNFMAMAEP-------------ADFVHVYDAKNGFE----- 397 (448)
Q Consensus 344 i~iwd~~~~~------~~~-~~~~~-~~~~v~~l~~sp~g~~l~s~~~-------------d~~v~vwd~~~~~~----- 397 (448)
|..|+..... +.+ ..+.. .......|+|.|+|.+.++.+. .|.|.-++.. +..
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~np 185 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNP 185 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCC
Confidence 7777765321 111 11221 1113467999999986665432 2456666643 220
Q ss_pred ---eee-eecCcCceEEEEEcc-CCCeEEEEE
Q 013184 398 ---KEQ-EIDFFGEISGMTFSP-DTEALFIGV 424 (448)
Q Consensus 398 ---~~~-~~~~~~~v~~~~fsp-dg~~L~~~~ 424 (448)
... ..++ ....+++|+| +|+ |+++-
T Consensus 186 f~~~~i~a~G~-rnp~Gla~d~~~g~-l~v~d 215 (354)
T 3a9g_A 186 FPNSPIWSYGH-RNPQGIDWHRASGV-MVATE 215 (354)
T ss_dssp STTCCEEEECC-SCCCEEEECTTTCC-EEEEE
T ss_pred CCCCcEEEEcc-CCcceEEEeCCCCC-EEEEe
Confidence 111 1223 3467999999 555 55553
No 325
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.71 E-value=0.28 Score=47.81 Aligned_cols=103 Identities=12% Similarity=0.107 Sum_probs=59.9
Q ss_pred CeeEEEECCCCCEEEEEecCCcEEEEECCCCcee--Eeeec------CCCcEEEEEEcCC---CCEEEEEe-C-------
Q 013184 280 PVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAI--MPLCG------HLDFSFASAWHPD---GRIFATGN-Q------- 340 (448)
Q Consensus 280 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~--~~l~~------h~~~v~~~~~~p~---g~~l~s~~-~------- 340 (448)
....++|.|+|+++++-...+.|++++..+++.. ..+.. .......|+|+|+ +..|..+. .
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 4579999999987766544457888876655532 22221 2456789999995 44444333 2
Q ss_pred -----CCcEEEEEccCCC------cce-EEEcc-CCCCeEEEEEcCCCCEEEEEe
Q 013184 341 -----DKTCRVWDVRNLS------KSV-AVLKG-NLGAIRSIRFTSDGNFMAMAE 382 (448)
Q Consensus 341 -----d~~i~iwd~~~~~------~~~-~~~~~-~~~~v~~l~~sp~g~~l~s~~ 382 (448)
...|.-++..... +.+ ..+.. .......|+|.|+|.+.++.+
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 1245555543211 111 11221 123468899999998666644
No 326
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.0083 Score=56.08 Aligned_cols=194 Identities=10% Similarity=0.043 Sum_probs=101.2
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEE-eCCCcEEEEecCCceEEEEeecC-
Q 013184 201 DNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMAS-NNDCGVRDFDMERFQLSKHFSFP- 278 (448)
Q Consensus 201 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~- 278 (448)
+.++++++.||.|...+..+++........ .....+. ..--..+.+...++.. +.||.|..++..+|.....+..+
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~-~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIE-IQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEE-CCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEE-ecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 457888888888888887766544322221 0011111 0000011122344443 68999999999988766555421
Q ss_pred ----CCeeE---EEE-C----CCCCEEEEEecCCcEEEEECCCCceeEeeecCC--Cc-----EEEEEEc-----CCCCE
Q 013184 279 ----WPVNH---TSL-S----PDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHL--DF-----SFASAWH-----PDGRI 334 (448)
Q Consensus 279 ----~~v~~---~~~-s----p~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~--~~-----v~~~~~~-----p~g~~ 334 (448)
.++.. ..+ . ..+..+++++.++.+...|+++|+.+..+.... .. ..|.... -.+..
T Consensus 88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 22221 000 0 035678899999999999999999998876321 11 1111111 12356
Q ss_pred EEEEeCCCcEEEEEccCCCcc----eEEEccCCCC--e-EEEEEcCCCCEEEEEeCCCeEEEEECCCCceee
Q 013184 335 FATGNQDKTCRVWDVRNLSKS----VAVLKGNLGA--I-RSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKE 399 (448)
Q Consensus 335 l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~~--v-~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~ 399 (448)
|+.+..+..+.+.+ ++ ++. .......... + ..-..+.++.+ +.++.+|.|.-+|..+|..+.
T Consensus 168 v~ig~~~y~v~~~~-~s-G~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YD-GASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEECEECC-TT-SCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EEEecceEEEEEEC-CC-CCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 66666666666555 22 220 0111111000 0 00011234666 446788899999988887664
No 327
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.66 E-value=0.44 Score=44.69 Aligned_cols=236 Identities=14% Similarity=0.092 Sum_probs=118.8
Q ss_pred EEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEE---eecCCCCceeeEEEEeCCC---CCeeEEEEeC-------CC
Q 013184 195 STLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSR---TTYDENAITNAVEIYNSPS---GGIHFMASNN-------DC 259 (448)
Q Consensus 195 ~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~---~~~~l~s~s~-------dg 259 (448)
..|++ +++.|+++...|.|++++.+......... .......-. ..+.++|+ +..+.++-+. ..
T Consensus 21 ~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~--~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 21 WALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGL--LDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp EEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSE--EEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred EEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCc--eeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 56666 67724445567988888743211000000 001111112 34445885 4434444332 23
Q ss_pred cEEEEecCCc--e---EEEEee-cC------CCeeEEEECCCCCEEEEEecC-------------CcEEEEECCCCc---
Q 013184 260 GVRDFDMERF--Q---LSKHFS-FP------WPVNHTSLSPDGKLLVIVGDN-------------PEGILVDSQTGK--- 311 (448)
Q Consensus 260 ~v~iwd~~~~--~---~~~~~~-~~------~~v~~~~~sp~~~~l~~~~~d-------------~~i~i~d~~~~~--- 311 (448)
.|..|++... + ....+. .+ .....++|.|+|.+.++.++. +.|.-++....-
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~ 178 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDD 178 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTT
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCC
Confidence 5666665432 1 111121 11 224679999999766665442 356666654320
Q ss_pred ---------eeEee-ecCCCcEEEEEEcC-CCCEEEEEeC-CCcEEEEEccCC---------------------------
Q 013184 312 ---------AIMPL-CGHLDFSFASAWHP-DGRIFATGNQ-DKTCRVWDVRNL--------------------------- 352 (448)
Q Consensus 312 ---------~~~~l-~~h~~~v~~~~~~p-~g~~l~s~~~-d~~i~iwd~~~~--------------------------- 352 (448)
....+ .++. ....++|+| +|+++++-.. ++.=.|.-+...
T Consensus 179 npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~ 257 (353)
T 2g8s_A 179 NPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIV 257 (353)
T ss_dssp CTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSC
T ss_pred CCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCC
Confidence 11111 2333 357899999 6665554322 211222222110
Q ss_pred ---CcceEEEccCCCCeEEEEEcC-------CCCEEEEEeCCCeEEEEECCCCceeee--ee-cCcCceEEEEEccCCCe
Q 013184 353 ---SKSVAVLKGNLGAIRSIRFTS-------DGNFMAMAEPADFVHVYDAKNGFEKEQ--EI-DFFGEISGMTFSPDTEA 419 (448)
Q Consensus 353 ---~~~~~~~~~~~~~v~~l~~sp-------~g~~l~s~~~d~~v~vwd~~~~~~~~~--~~-~~~~~v~~~~fspdg~~ 419 (448)
..++..+..| ..+..+.|.. +|.++++.-..+.|...++..+..... +. .....+.++++.|||..
T Consensus 258 ~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~l 336 (353)
T 2g8s_A 258 AGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYL 336 (353)
T ss_dssp TTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCE
T ss_pred CCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcE
Confidence 1122333333 3466788864 567777766778888888876543322 21 23457999999999984
Q ss_pred EEEEEecCCcceEEEEe
Q 013184 420 LFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 420 L~~~~~D~~~~~ll~~~ 436 (448)
.++ . |..-++++.+.
T Consensus 337 yv~-t-d~~~g~I~ri~ 351 (353)
T 2g8s_A 337 YVL-T-DESSGELLKVS 351 (353)
T ss_dssp EEE-E-CSTTEEEEEEE
T ss_pred EEE-E-eCCCCEEEEEe
Confidence 443 3 33345666553
No 328
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.65 E-value=0.14 Score=47.14 Aligned_cols=211 Identities=11% Similarity=0.048 Sum_probs=102.2
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeC----CC-------cEEEEecCCc
Q 013184 201 DNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNN----DC-------GVRDFDMERF 269 (448)
Q Consensus 201 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~----dg-------~v~iwd~~~~ 269 (448)
+.+++.|+. .+.+||..+..... ............++ . ..++. +++.|+. ++ .+.+||+.+.
T Consensus 16 ~~i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~-~--~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~ 88 (318)
T 2woz_A 16 DLILLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSI-V--TQQNQ-VYVVGGLYVDEENKDQPLQSYFFQLDNVSS 88 (318)
T ss_dssp EEEEEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEE-E--CSSSC-EEEEESSCC-------CCCBEEEEEETTTT
T ss_pred chhhhcccc--ceEEECCCCCceec-ccCCccCCccceEE-E--EECCE-EEEECCcccCccccCCCccccEEEEeCCCC
Confidence 345666664 37888887766433 22211111111122 1 23444 6666662 11 2778898887
Q ss_pred eEEEEeecC--CCeeEEEECCCCCEEEEEecC-------CcEEEEECCCCceeEe--eecCCCcEEEEEEcCCCCEEEEE
Q 013184 270 QLSKHFSFP--WPVNHTSLSPDGKLLVIVGDN-------PEGILVDSQTGKAIMP--LCGHLDFSFASAWHPDGRIFATG 338 (448)
Q Consensus 270 ~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~d-------~~i~i~d~~~~~~~~~--l~~h~~~v~~~~~~p~g~~l~s~ 338 (448)
+....-..+ ..-.+++.. ++++++.|+.+ ..+.+||+.+.+-... +....... +++. .++++++.|
T Consensus 89 ~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~G 165 (318)
T 2woz_A 89 EWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLG 165 (318)
T ss_dssp EEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTEEEEEC
T ss_pred cEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCEEEEEc
Confidence 765432221 111222222 56777777754 2578889887654322 11111111 1222 366777777
Q ss_pred eC------CCcEEEEEccCCCcceEEEcc---CCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceeee--ee
Q 013184 339 NQ------DKTCRVWDVRNLSKSVAVLKG---NLGAIRSIRFTSDGNFMAMAEPA-----DFVHVYDAKNGFEKEQ--EI 402 (448)
Q Consensus 339 ~~------d~~i~iwd~~~~~~~~~~~~~---~~~~v~~l~~sp~g~~l~s~~~d-----~~v~vwd~~~~~~~~~--~~ 402 (448)
+. -..+.+||+.+ .. -..+.. .......+.+ +++.++.|+.+ ..+.+||+.+..-... ..
T Consensus 166 G~~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p 241 (318)
T 2woz_A 166 GKTDDKKCTNRVFIYNPKK-GD-WKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFP 241 (318)
T ss_dssp CEESSSCBCCCEEEEETTT-TE-EEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCS
T ss_pred CCCCCCCccceEEEEcCCC-CE-EEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCC
Confidence 54 23588899864 21 222211 1111122222 56777777643 3578999887643321 11
Q ss_pred cCcCceEEEEEccCCCeEEEEEecC
Q 013184 403 DFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 403 ~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
...... +++ ..+++.++.|+.+.
T Consensus 242 ~~r~~~-~~~-~~~~~i~v~GG~~~ 264 (318)
T 2woz_A 242 QERSSI-SLV-SLAGSLYAIGGFAM 264 (318)
T ss_dssp SCCBSC-EEE-EETTEEEEECCBCC
T ss_pred Ccccce-EEE-EECCEEEEECCeec
Confidence 111111 222 23577777877654
No 329
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.64 E-value=0.17 Score=47.34 Aligned_cols=140 Identities=13% Similarity=-0.010 Sum_probs=67.6
Q ss_pred CcEEEEecCCceEEEEeecC--CCe-eEEEECCCCCEEEEEec------CCcEEEEEC--CCCceeE--eeecCCCcEEE
Q 013184 259 CGVRDFDMERFQLSKHFSFP--WPV-NHTSLSPDGKLLVIVGD------NPEGILVDS--QTGKAIM--PLCGHLDFSFA 325 (448)
Q Consensus 259 g~v~iwd~~~~~~~~~~~~~--~~v-~~~~~sp~~~~l~~~~~------d~~i~i~d~--~~~~~~~--~l~~h~~~v~~ 325 (448)
..+.+||+.+.+....-..+ ..- .+++.. ++++++.|+. ...+.++|+ .+.+-.. .+.........
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 46889999887755443322 122 222222 5666666653 345777876 4443221 12111111111
Q ss_pred EEEcCCCCEEEEEeCC----------------------CcEEEEEccCCC-cceEEEccCCCCeEEEEEcCCCCEEEEEe
Q 013184 326 SAWHPDGRIFATGNQD----------------------KTCRVWDVRNLS-KSVAVLKGNLGAIRSIRFTSDGNFMAMAE 382 (448)
Q Consensus 326 ~~~~p~g~~l~s~~~d----------------------~~i~iwd~~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~s~~ 382 (448)
.+...++++++.|+.+ ..+.+||+.+.. ..+..+......-.+ ...+++.++.|+
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG 324 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGG 324 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEee
Confidence 1122256777777632 247788886421 222223222222222 234678888887
Q ss_pred CCC------eEEEEECCCCceeeee
Q 013184 383 PAD------FVHVYDAKNGFEKEQE 401 (448)
Q Consensus 383 ~d~------~v~vwd~~~~~~~~~~ 401 (448)
.++ .|.++++.+++.....
T Consensus 325 ~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 325 ETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp ECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eCCCCCEeeeEEEEEEcCcEeEeee
Confidence 542 4667788877665443
No 330
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.64 E-value=0.15 Score=52.77 Aligned_cols=223 Identities=11% Similarity=0.073 Sum_probs=115.9
Q ss_pred ecCCEEEEEeCC----CeEEEEEcCCCCceeEE-Eee---cCCCCceeeEEEEeCCCCCeeEEEEeCC------CcEEEE
Q 013184 199 VRDNLLIAGGFQ----GELICKYLDQPGVSFCS-RTT---YDENAITNAVEIYNSPSGGIHFMASNND------CGVRDF 264 (448)
Q Consensus 199 ~~~~~lvsg~~d----g~i~vw~~~~~~~~~~~-~~~---~~~~~~~~~v~~~~~~~~~~~l~s~s~d------g~v~iw 264 (448)
.++.+++.||.+ ..+.+++..+....... ... ........++.. .+.++.+++.|+.+ ..+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~--~~~~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTT--ISRNNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEE--ETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEE--EccCCEEEEEcCCCCCCCccccEEEE
Confidence 588889999864 35778888776643322 100 011111112222 22133467777643 357889
Q ss_pred ecCCceEEEEee--cCCCeeEEEECCCCCEEEEEecCC--cEEEEECCCCceeEee-----ecCCCcEEEEEEcCC-CCE
Q 013184 265 DMERFQLSKHFS--FPWPVNHTSLSPDGKLLVIVGDNP--EGILVDSQTGKAIMPL-----CGHLDFSFASAWHPD-GRI 334 (448)
Q Consensus 265 d~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~--~i~i~d~~~~~~~~~l-----~~h~~~v~~~~~~p~-g~~ 334 (448)
|+.+.+....-. .+..-.+++.-.++++++.||.++ .+.+||..+.+-...- ........++.+..+ +++
T Consensus 474 d~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 474 DMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp ETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred eCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 998866544322 222222333334788888887654 6899999887543221 111222233555555 667
Q ss_pred EEEEeC--C-----CcEEEEEccCCCc--c--eEEEcc----CCCCeEEEEEcCCCCEEEEEeC--------CCeEEEEE
Q 013184 335 FATGNQ--D-----KTCRVWDVRNLSK--S--VAVLKG----NLGAIRSIRFTSDGNFMAMAEP--------ADFVHVYD 391 (448)
Q Consensus 335 l~s~~~--d-----~~i~iwd~~~~~~--~--~~~~~~----~~~~v~~l~~sp~g~~l~s~~~--------d~~v~vwd 391 (448)
++.|+. + ..+.+||+.+..- . -..+.. ..... ++....+++.++.|+. ...|.+||
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 777765 2 3588999876320 0 112211 11111 2233333777777764 34699999
Q ss_pred CCCCceeeeeecCcCce----------EEEEEccCCCeEEEEEec
Q 013184 392 AKNGFEKEQEIDFFGEI----------SGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 392 ~~~~~~~~~~~~~~~~v----------~~~~fspdg~~L~~~~~D 426 (448)
+.+..-.. .. ..... .+++..++|+.++.|+..
T Consensus 633 ~~t~~W~~-~~-~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~ 675 (695)
T 2zwa_A 633 PLSETLTS-IP-ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGA 675 (695)
T ss_dssp TTTTEEEE-CC-CCHHHHHHSCCCCSSCEEECC---CEEEECCEE
T ss_pred CCCCeEEE-ee-ccccccCCCCccceeeeEEEeCCCEEEEEeCCc
Confidence 98765431 11 11100 234445566888888654
No 331
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.59 E-value=0.099 Score=48.06 Aligned_cols=164 Identities=12% Similarity=0.093 Sum_probs=95.1
Q ss_pred CCCeeEEEEe-CCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecC--------------CcEEEEECCCCc
Q 013184 247 SGGIHFMASN-NDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDN--------------PEGILVDSQTGK 311 (448)
Q Consensus 247 ~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--------------~~i~i~d~~~~~ 311 (448)
+++.+.++.. .++.|...+.......+.... .+--++++|.+|+.+... ..|+..++..++
T Consensus 24 ~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~ 99 (302)
T 3s25_A 24 SDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG 99 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCC
T ss_pred eCCEEEEEeCCCCceEEEEcCCCCCCEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc
Confidence 4443333332 245666666655443333221 134557888888877653 357777777665
Q ss_pred eeEeeecCCCcEEEEEEcCCCCEEEEEe--CCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeC-CCeEE
Q 013184 312 AIMPLCGHLDFSFASAWHPDGRIFATGN--QDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEP-ADFVH 388 (448)
Q Consensus 312 ~~~~l~~h~~~v~~~~~~p~g~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~-d~~v~ 388 (448)
... +.. .. +..|+|++..|+-.. .++.-.||-+...+.....+..+.. ..|+|+|+.|.-.+. ...|.
T Consensus 100 ~~~-l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy 170 (302)
T 3s25_A 100 STV-LDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLY 170 (302)
T ss_dssp CEE-EEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEE
T ss_pred ceE-eec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEE
Confidence 332 322 22 236778888888776 3444555554433455555655433 456788998887665 56888
Q ss_pred EEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecC
Q 013184 389 VYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 389 vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
+.++..+... .+.. +... ..++|++.+|+-..+..
T Consensus 171 ~~~l~g~~~~-~l~~--~~~~-~~~~P~g~~iy~t~~~~ 205 (302)
T 3s25_A 171 RYDTASQSEA-LFYD--CNCY-KPVVLDDTNVYYMDVNR 205 (302)
T ss_dssp EEETTTTEEE-EEEC--SCEE-EEEEEETTEEEEEEGGG
T ss_pred EEECCCCCEE-EEeC--CCcc-ceeeecCCEEEEEEcCC
Confidence 8888765543 3322 2332 34668888888776653
No 332
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.59 E-value=0.21 Score=54.87 Aligned_cols=181 Identities=13% Similarity=0.092 Sum_probs=105.6
Q ss_pred CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC-ceEEEEee-c----CCCeeE
Q 013184 210 QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER-FQLSKHFS-F----PWPVNH 283 (448)
Q Consensus 210 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~-~----~~~v~~ 283 (448)
..++.|+++++........+.. ..+-|-|-.... +-+++ +..|..|+++. ..+++.|. | ...|..
T Consensus 85 g~~lQiFnl~~k~klks~~~~e------~VvfWkWis~~~-l~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIin 155 (1630)
T 1xi4_A 85 GKTLQIFNIEMKSKMKAHTMTD------DVTFWKWISLNT-VALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIIN 155 (1630)
T ss_pred CCeEEEeehHHhhhhcccccCC------CceEEEecCCCe-eEEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEE
Confidence 6789999998876432222211 133444443333 22222 35799999974 34544444 2 466777
Q ss_pred EEECCCCCEEEEEe-------cCCcEEEEECCCCceeEeeecCCCcEEEEEEc--C-CCCEEEEEeC---CCcEEEEEcc
Q 013184 284 TSLSPDGKLLVIVG-------DNPEGILVDSQTGKAIMPLCGHLDFSFASAWH--P-DGRIFATGNQ---DKTCRVWDVR 350 (448)
Q Consensus 284 ~~~sp~~~~l~~~~-------~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~--p-~g~~l~s~~~---d~~i~iwd~~ 350 (448)
...+++.++++..| -.|.+.+|....+ .-+.+.||......+... + ...+++.+.. .+.++|.++.
T Consensus 156 Y~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~ 234 (1630)
T 1xi4_A 156 YRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVG 234 (1630)
T ss_pred eeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecC
Confidence 88889999888665 3477888876543 234466665543333222 1 1223333322 2678888885
Q ss_pred CC--Cc------ceEEEccC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee
Q 013184 351 NL--SK------SVAVLKGN---LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400 (448)
Q Consensus 351 ~~--~~------~~~~~~~~---~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~ 400 (448)
.. +. .+..+... ..-..++..|+.-..+..-+.-|.|++||+.++.++..
T Consensus 235 ~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 235 TPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred CCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence 42 11 11111111 11123677788777888888999999999999987654
No 333
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.58 E-value=0.28 Score=45.85 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=87.2
Q ss_pred CCCeeEEEECCCCCEEEEEecCCcEEEEECCCCcee--Eee----ecCCCcEEEEEEcCC----CCEEEEEe--CCCcEE
Q 013184 278 PWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAI--MPL----CGHLDFSFASAWHPD----GRIFATGN--QDKTCR 345 (448)
Q Consensus 278 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~--~~l----~~h~~~v~~~~~~p~----g~~l~s~~--~d~~i~ 345 (448)
-.....++|.|+|.++++--..|.|++++..+++.. ..+ .........++++|+ +.+.++-+ .++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 345679999999997766655889999987666542 212 123456789999995 43333322 334455
Q ss_pred EEEccCC---------Ccc-eEEEcc-CCCCeEEEEEcCCCCEEEEEeC-------------CCeEEEEECCCCce----
Q 013184 346 VWDVRNL---------SKS-VAVLKG-NLGAIRSIRFTSDGNFMAMAEP-------------ADFVHVYDAKNGFE---- 397 (448)
Q Consensus 346 iwd~~~~---------~~~-~~~~~~-~~~~v~~l~~sp~g~~l~s~~~-------------d~~v~vwd~~~~~~---- 397 (448)
-|.+... .+. +..+.. .......|.|.|+|.+.++.+. .|.|.-++.. +..
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d-G~ip~~n 189 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD-GEPAPGN 189 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-SSBCTTC
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-CCccCCC
Confidence 5555321 011 112221 1123467999999986666432 2444444543 220
Q ss_pred ----eee-eecCcCceEEEEEccCCCeEEEEEecC-CcceEEEEecccce
Q 013184 398 ----KEQ-EIDFFGEISGMTFSPDTEALFIGVWDR-TYGSLLQYNRCRNY 441 (448)
Q Consensus 398 ----~~~-~~~~~~~v~~~~fspdg~~L~~~~~D~-~~~~ll~~~~~~~~ 441 (448)
... ..+| ....+++|+|+|+. +++-... ..-.+.......+|
T Consensus 190 Pf~~~~i~a~G~-RNp~Gla~dp~G~L-~~~d~g~~~~deln~i~~G~ny 237 (347)
T 3das_A 190 PFPGSPVYSYGH-RNVQGLAWDDKQRL-FASEFGQDTWDELNAIKPGDNY 237 (347)
T ss_dssp SSTTCCEEEBCC-SBCCEEEECTTCCE-EEEECCSSSCEEEEEECTTCBC
T ss_pred CCCCCeEEeeCC-CCcceEEECCCCCE-EEEecCCCCCceeeEEcCCCEe
Confidence 011 1233 24679999998764 4442211 12344444455444
No 334
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.23 E-value=1.9 Score=47.26 Aligned_cols=182 Identities=12% Similarity=0.101 Sum_probs=98.8
Q ss_pred eeEEEEec--------CCEEEEEeC-CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEE
Q 013184 193 QVSTLAVR--------DNLLIAGGF-QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRD 263 (448)
Q Consensus 193 ~i~~l~~~--------~~~lvsg~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~i 263 (448)
.|+|+++. +.++++|.. |++++|+.+..-.......+ .....+..+.+... .+..+|..|-.||.+.-
T Consensus 555 evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L--~~~~~p~si~l~~~-~~~~~L~igl~dG~l~~ 631 (1158)
T 3ei3_A 555 EVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML--GGEIIPRSILMTTF-ESSHYLLCALGDGALFY 631 (1158)
T ss_dssp CEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEEC--CSSCCEEEEEEEEE-TTEEEEEEEETTSEEEE
T ss_pred ceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEEC--CCCCCCcEEEEEEe-CCCcEEEEEeCCCeEEE
Confidence 58888872 478999997 99999999986443222222 22235556666544 34567889999998865
Q ss_pred Eec--CCceEEEEe--e-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeE-eeecCCCcEEEEEEcCC--CCEE
Q 013184 264 FDM--ERFQLSKHF--S-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIM-PLCGHLDFSFASAWHPD--GRIF 335 (448)
Q Consensus 264 wd~--~~~~~~~~~--~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~-~l~~h~~~v~~~~~~p~--g~~l 335 (448)
+.+ .++++...- . ...++.-..+...+..-+.+..+.-..++-.+ ++... .+.. ..-.....|+.. ..-+
T Consensus 632 ~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~-~~v~~~~~F~se~~~~g~ 709 (1158)
T 3ei3_A 632 FGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNL-KEVNYMCPLNSDGYPDSL 709 (1158)
T ss_dssp EEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSS-SCCCEEEEECCSSSTTEE
T ss_pred EEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccCh-HHhceEeccCcccCCCcE
Confidence 544 455544331 1 34455554554444444444444445555433 33222 1211 111233456432 2234
Q ss_pred EEEeCCCcEEEEEccCCCc-ceEEEccCCCCeEEEEEcCCCCEEEEE
Q 013184 336 ATGNQDKTCRVWDVRNLSK-SVAVLKGNLGAIRSIRFTSDGNFMAMA 381 (448)
Q Consensus 336 ~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~l~~sp~g~~l~s~ 381 (448)
+..+ ++.++|.-+....+ .+..+. -...++.++++|..+.++.+
T Consensus 710 v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~ 754 (1158)
T 3ei3_A 710 ALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVL 754 (1158)
T ss_dssp EEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEE
T ss_pred EEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEE
Confidence 4333 45699988754322 223333 23467888888877655444
No 335
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.11 E-value=0.25 Score=46.38 Aligned_cols=145 Identities=10% Similarity=0.008 Sum_probs=77.8
Q ss_pred CeeEEEECCCCCEEEEEecCCcEEEEECCCCcee---Eee----ecCCCcEEEEEEcCC---CCEEEEE-eC-------C
Q 013184 280 PVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAI---MPL----CGHLDFSFASAWHPD---GRIFATG-NQ-------D 341 (448)
Q Consensus 280 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~---~~l----~~h~~~v~~~~~~p~---g~~l~s~-~~-------d 341 (448)
....++|.|+|+.|+++...+.|++++.. ++.. ..+ .........++++|+ +..|..+ +. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 45799999999834455667899999853 3321 111 112346789999995 4444433 22 2
Q ss_pred CcEEEEEccCCCc---ceEE-Ecc------CCCCeEEEEEcCCCCEEEEEeC-------------CCeEEEEECCCCc--
Q 013184 342 KTCRVWDVRNLSK---SVAV-LKG------NLGAIRSIRFTSDGNFMAMAEP-------------ADFVHVYDAKNGF-- 396 (448)
Q Consensus 342 ~~i~iwd~~~~~~---~~~~-~~~------~~~~v~~l~~sp~g~~l~s~~~-------------d~~v~vwd~~~~~-- 396 (448)
..|..|++..... .... +.. .......|+|.|+|.+.++-+. .|.|.-++....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 2455566543111 1111 111 1112357999999955444332 2467777754320
Q ss_pred ----------eeeeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 397 ----------EKEQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 397 ----------~~~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
....+..-.....+++|.|....|+++-.
T Consensus 178 ~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~ 216 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEH 216 (353)
T ss_dssp TCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEE
T ss_pred CCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEec
Confidence 11111111234789999994445655533
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.09 E-value=0.92 Score=42.36 Aligned_cols=227 Identities=12% Similarity=0.099 Sum_probs=117.1
Q ss_pred eEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEee-cCCCCceeeEEEEeCCC---CCeeEEEE--eCCCcEEEEe
Q 013184 194 VSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTT-YDENAITNAVEIYNSPS---GGIHFMAS--NNDCGVRDFD 265 (448)
Q Consensus 194 i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~---~~~~l~s~--s~dg~v~iwd 265 (448)
-+.|++ ++.++++--..|.|++++...........+. ....+.-..+.+.++|+ +..+.++- ..+..|.-|.
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~ 113 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRML 113 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEE
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEE
Confidence 356777 7777776665899888875443322111111 00111112234444874 33333332 2345566665
Q ss_pred cCCc----------eE-EEEee--cCCCeeEEEECCCCCEEEEEec-------------CCcEEEEECCCC---------
Q 013184 266 MERF----------QL-SKHFS--FPWPVNHTSLSPDGKLLVIVGD-------------NPEGILVDSQTG--------- 310 (448)
Q Consensus 266 ~~~~----------~~-~~~~~--~~~~v~~~~~sp~~~~l~~~~~-------------d~~i~i~d~~~~--------- 310 (448)
+..+ +. +..+. .......+.|.|+|.+.++.++ .+.|.-++....
T Consensus 114 ~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~ 193 (347)
T 3das_A 114 YDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPG 193 (347)
T ss_dssp BCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTT
T ss_pred eCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCC
Confidence 5431 11 12222 1223467999999988777653 244544454321
Q ss_pred ceeEeeecCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEEccCC-----------------CcceEEEccCCCCeEEEEEc
Q 013184 311 KAIMPLCGHLDFSFASAWHPDGRIFATGN-QDKTCRVWDVRNL-----------------SKSVAVLKGNLGAIRSIRFT 372 (448)
Q Consensus 311 ~~~~~l~~h~~~v~~~~~~p~g~~l~s~~-~d~~i~iwd~~~~-----------------~~~~~~~~~~~~~v~~l~~s 372 (448)
..+. -.+|.. ...++|+|+|.++++-. .++.-.|--+... ..++..+..+......++|.
T Consensus 194 ~~i~-a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~ 271 (347)
T 3das_A 194 SPVY-SYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA 271 (347)
T ss_dssp CCEE-EBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE
T ss_pred CeEE-eeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE
Confidence 1111 124443 35799999988666543 2332333322211 12334444333355677776
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCcee----eeeecCcCceEEEEEccCCCeEEEE
Q 013184 373 SDGNFMAMAEPADFVHVYDAKNGFEK----EQEIDFFGEISGMTFSPDTEALFIG 423 (448)
Q Consensus 373 p~g~~l~s~~~d~~v~vwd~~~~~~~----~~~~~~~~~v~~~~fspdg~~L~~~ 423 (448)
+|..++..-..+.|....+...... ..+.+..+.+.+|+..|||..+++.
T Consensus 272 -~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 272 -EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp -TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred -cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 4666655555566666666544321 1222345789999999999765554
No 337
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.90 E-value=2 Score=44.67 Aligned_cols=253 Identities=11% Similarity=0.033 Sum_probs=136.0
Q ss_pred eeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcC
Q 013184 140 WSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLD 219 (448)
Q Consensus 140 ~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~ 219 (448)
.....+.++++....+..+|..+..... .. . .....|.++......|..|+.+ .|..++..
T Consensus 69 ~~d~~g~lWigT~~Gl~~yd~~~~~f~~---~~---~------------~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~ 129 (758)
T 3ott_A 69 VIIDNTYLYMGTDNGILVYNYRADRYEQ---PE---T------------DFPTDVRTMALQGDTLWLGALN-GLYTYQLQ 129 (758)
T ss_dssp EEETTTEEEEEETTEEEEEETTTTEECC---CS---C------------CCCSCEEEEEEETTEEEEEETT-EEEEEETT
T ss_pred EEcCCCcEEEEeCCCeEEEeCCCCEEEC---cc---c------------CCCceEEEEEecCCcEEEEcCC-cceeEeCC
Confidence 3455677888887789999976643221 00 0 0011366665545566667766 56778876
Q ss_pred CCCceeEEEeec-CCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeec------CCCeeEEEECCCCCE
Q 013184 220 QPGVSFCSRTTY-DENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSF------PWPVNHTSLSPDGKL 292 (448)
Q Consensus 220 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~------~~~v~~~~~sp~~~~ 292 (448)
+........... -....+. ++...++|. |..|+.. .|..++..+++....... ...|.++...+++..
T Consensus 130 ~~~~~~~~~~~~~l~~~~i~--~i~~d~~g~--lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~ 204 (758)
T 3ott_A 130 SRKLTSFDTRRNGLPNNTIY--SIIRTKDNQ--IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQC 204 (758)
T ss_dssp TCCEEEECHHHHCCSCSCEE--EEEECTTCC--EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTE
T ss_pred CCeEEEeccCCCCcCCCeEE--EEEEcCCCC--EEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCE
Confidence 544221100000 1112222 334456665 4445554 577888877664322111 123788888777776
Q ss_pred EEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEcc--------CCC
Q 013184 293 LVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKG--------NLG 364 (448)
Q Consensus 293 l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------~~~ 364 (448)
|.+|+. +-+..++..+++...........|.++...++|.+.+ |+.. -+.+++..+ . .+..+.. ...
T Consensus 205 lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~-~-~~~~~~~~~~~~~~l~~~ 279 (758)
T 3ott_A 205 VWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDT-T-PLQHIIHDSRNIQSLTNN 279 (758)
T ss_dssp EEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTT-S-CCEEECCCTTCTTSCSCS
T ss_pred EEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCC-C-cEEEEEcCCCCcCcCCcC
Confidence 666664 4588899887654321111234578888888887554 4444 477888754 2 2333321 123
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeee-----cCcCceEEEEEccCCCeEEEEE
Q 013184 365 AIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEI-----DFFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 365 ~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~-----~~~~~v~~~~fspdg~~L~~~~ 424 (448)
.|.++....+|.+ -.|+..| |.++............ .....|.++.-..+|. |.+|.
T Consensus 280 ~i~~i~~D~~g~l-WiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~-lWiGt 341 (758)
T 3ott_A 280 IIWNIFADQEHNI-WLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGF-YWFGG 341 (758)
T ss_dssp CEEEEEECTTCCE-EEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCC-EEEEE
T ss_pred eEEEEEEcCCCCE-EEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCC-EEEee
Confidence 5889988887764 4455556 5554432211111110 0123577887777765 44444
No 338
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.81 E-value=2.2 Score=44.40 Aligned_cols=217 Identities=13% Similarity=0.067 Sum_probs=120.7
Q ss_pred CcceeeEEEEe-cCCEEEEEeCCCeEEEEEcCCCCceeEEEee-cCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEec
Q 013184 189 FTQTQVSTLAV-RDNLLIAGGFQGELICKYLDQPGVSFCSRTT-YDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM 266 (448)
Q Consensus 189 ~~~~~i~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~ 266 (448)
+++..|.+|.- ...+|-.|+.+| |..+|-.. .. ..... ......+.+ +....+| .|..|+.+| +..||.
T Consensus 19 l~~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~--~~-~~~~~~~~~~~~i~~--i~~d~~g--~lWigT~~G-l~~yd~ 89 (758)
T 3ott_A 19 AEASVVSCFLQDSEGLIWIGSNKG-LFSYDGYS--TQ-QHFTYGENNNTRIYC--GVIIDNT--YLYMGTDNG-ILVYNY 89 (758)
T ss_dssp SSCCCEEEEEECTTSCEEEEESSC-EEEECSSC--EE-ECSCTTSTTSSCEEE--EEEETTT--EEEEEETTE-EEEEET
T ss_pred cccceEEEEEECCCCCEEEEECCC-ccccCCCc--eE-EEEccCCCCCceEEE--EEEcCCC--cEEEEeCCC-eEEEeC
Confidence 34456899988 445677788777 44455211 10 00000 011122333 3334555 466666655 789998
Q ss_pred CCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeee-----cCCCcEEEEEEcCCCCEEEEEeC
Q 013184 267 ERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLC-----GHLDFSFASAWHPDGRIFATGNQ 340 (448)
Q Consensus 267 ~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~-----~h~~~v~~~~~~p~g~~l~s~~~ 340 (448)
.+.+...... ....|.++... +| .|.+++.+ .+..+|..+++... +. .....|.++...++|.+.+ |+.
T Consensus 90 ~~~~f~~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~ 164 (758)
T 3ott_A 90 RADRYEQPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQIYV-GTY 164 (758)
T ss_dssp TTTEECCCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCCEEE-EET
T ss_pred CCCEEECcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCCEEE-EeC
Confidence 8765443111 23346666543 44 56666665 68889987765432 21 1235688888888887555 444
Q ss_pred CCcEEEEEccCCCcceEEEccC------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEc
Q 013184 341 DKTCRVWDVRNLSKSVAVLKGN------LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFS 414 (448)
Q Consensus 341 d~~i~iwd~~~~~~~~~~~~~~------~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fs 414 (448)
.| +..++... . ....+... ...|.++...+++..|..|+. +-|..+|..++............|.++...
T Consensus 165 ~G-l~~~~~~~-~-~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d 240 (758)
T 3ott_A 165 NG-LCRYIPSN-G-KFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALD 240 (758)
T ss_dssp TE-EEEEETTT-T-EEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEEC
T ss_pred CC-HhhCccCC-C-ceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEc
Confidence 44 77788754 2 22222211 124888888877776555654 358889977654322111123457888887
Q ss_pred cCCCeEEEEE
Q 013184 415 PDTEALFIGV 424 (448)
Q Consensus 415 pdg~~L~~~~ 424 (448)
++|... +|.
T Consensus 241 ~~g~lW-igT 249 (758)
T 3ott_A 241 GNGDLL-AGT 249 (758)
T ss_dssp TTCCEE-EEE
T ss_pred CCCCEE-EEe
Confidence 777644 444
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.68 E-value=1 Score=46.43 Aligned_cols=193 Identities=11% Similarity=0.122 Sum_probs=101.2
Q ss_pred CCCeEEEecC------CeEEEEecCCCceeEEE-ecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCC--
Q 013184 143 SKHDVYLMSH------FSIVHWSSLSSKRTEVL-DVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQG-- 211 (448)
Q Consensus 143 ~~~~v~~~~~------~~v~~w~~~~~~~~~~~-~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg-- 211 (448)
.++.||+.+. ..+..+|+.+..-..+. .+.....|. ....-.+... ++++++.||.++
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~-----------~R~~hs~~~~~~~~~lyv~GG~~~~~ 464 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPV-----------ARMCHTFTTISRNNQLLLIGGRKAPH 464 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCC-----------CCBSCEEEEETTTTEEEEECCBSSTT
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCc-----------cccceEEEEEccCCEEEEEcCCCCCC
Confidence 4556666543 24888888776665554 321111111 1112345556 788888988654
Q ss_pred ----eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC--cEEEEecCCceEEEEee-----cC-C
Q 013184 212 ----ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC--GVRDFDMERFQLSKHFS-----FP-W 279 (448)
Q Consensus 212 ----~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~-----~~-~ 279 (448)
.+.++++.+........+....... +... ..++. +++.|+.++ .+.+||+.+.+....-. .+ .
T Consensus 465 ~~~~dv~~yd~~t~~W~~~~~~p~~R~~h--~~~~--~~~~~-iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~ 539 (695)
T 2zwa_A 465 QGLSDNWIFDMKTREWSMIKSLSHTRFRH--SACS--LPDGN-VLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSL 539 (695)
T ss_dssp CBCCCCEEEETTTTEEEECCCCSBCCBSC--EEEE--CTTSC-EEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCC
T ss_pred CccccEEEEeCCCCcEEECCCCCCCcccc--eEEE--EcCCE-EEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccc
Confidence 4667777765433221111111111 1111 13444 677776544 69999998877554321 11 1
Q ss_pred CeeEEEECCC-CCEEEEEec--C-----CcEEEEECCCCce-----eEeeec---CCCcEEEEEEcCCCCEEEEEeC---
Q 013184 280 PVNHTSLSPD-GKLLVIVGD--N-----PEGILVDSQTGKA-----IMPLCG---HLDFSFASAWHPDGRIFATGNQ--- 340 (448)
Q Consensus 280 ~v~~~~~sp~-~~~l~~~~~--d-----~~i~i~d~~~~~~-----~~~l~~---h~~~v~~~~~~p~g~~l~s~~~--- 340 (448)
...++.+... +++++.|+. + ..+.+||+.+.+. ...+.. ....-.+++...++++++.|+.
T Consensus 540 ~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~ 619 (695)
T 2zwa_A 540 VSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPS 619 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSS
T ss_pred ceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCC
Confidence 1233555554 667777765 2 4588999888761 111211 1111112233333677777764
Q ss_pred -----CCcEEEEEccC
Q 013184 341 -----DKTCRVWDVRN 351 (448)
Q Consensus 341 -----d~~i~iwd~~~ 351 (448)
...+.+||+.+
T Consensus 620 ~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 620 GLFDRTNSIISLDPLS 635 (695)
T ss_dssp CCCCTTTSEEEEETTT
T ss_pred CCCCCCCeEEEEECCC
Confidence 34588999865
No 340
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.65 E-value=0.6 Score=46.13 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=63.6
Q ss_pred EEEEEcCCCCEEEEEeC-CCcEEEEEccCCC-----------cc-eEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 013184 324 FASAWHPDGRIFATGNQ-DKTCRVWDVRNLS-----------KS-VAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVY 390 (448)
Q Consensus 324 ~~~~~~p~g~~l~s~~~-d~~i~iwd~~~~~-----------~~-~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vw 390 (448)
..+..+|||++++.++. +.++.++|++... .. +....... .....+|.++|.-..+---|..|.-|
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl-GPlHt~Fd~~G~aYTtlfidSqvvkW 404 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL-GPLHTTFDGRGNAYTTLFIDSQVVKW 404 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS-CEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC-cccEEEECCCCceEeeeeecceEEEE
Confidence 46789999998887764 7789999987311 11 22233233 34678999999444455578999999
Q ss_pred ECCCC----------ceeeeeecCcCceEEEEE------ccCCCeEEEEE
Q 013184 391 DAKNG----------FEKEQEIDFFGEISGMTF------SPDTEALFIGV 424 (448)
Q Consensus 391 d~~~~----------~~~~~~~~~~~~v~~~~f------spdg~~L~~~~ 424 (448)
++... ..+..+.-| -.+-.+.- .|||++|++..
T Consensus 405 ni~~a~~~~~g~~~~~v~~k~dv~-YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 405 NMEEAVRAYKGEKVNYIKQKLDVH-YQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EHHHHHHHHTTCCCCCEEEEEECS-SCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred eccHHHHHhcCccCCeeeeccccc-cCCcccccCCCccCCCCccEEEEec
Confidence 98653 122223323 23344433 67999999873
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.34 E-value=1.3 Score=43.15 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=53.9
Q ss_pred EEEeCCCCCeeEEEEeCC-CcEEEEecCCceEEEEeec---------CCCeeEEEECCC---CCEEEEEec---------
Q 013184 241 EIYNSPSGGIHFMASNND-CGVRDFDMERFQLSKHFSF---------PWPVNHTSLSPD---GKLLVIVGD--------- 298 (448)
Q Consensus 241 ~~~~~~~~~~~l~s~s~d-g~v~iwd~~~~~~~~~~~~---------~~~v~~~~~sp~---~~~l~~~~~--------- 298 (448)
.+.+.|+|. +++ +... +.|++++..+++....... ...+..++|+|+ +..|+++..
T Consensus 31 ~~a~~pdG~-l~V-~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~ 108 (454)
T 1cru_A 31 ALLWGPDNQ-IWL-TERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDK 108 (454)
T ss_dssp EEEECTTSC-EEE-EETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--C
T ss_pred EEEEcCCCc-EEE-EEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcc
Confidence 334488885 444 4455 4688888765554322221 245669999995 555555542
Q ss_pred ----CCcEEEEECCCC--c-----eeE-eeec-CCCcEEEEEEcCCCCEEEEEe
Q 013184 299 ----NPEGILVDSQTG--K-----AIM-PLCG-HLDFSFASAWHPDGRIFATGN 339 (448)
Q Consensus 299 ----d~~i~i~d~~~~--~-----~~~-~l~~-h~~~v~~~~~~p~g~~l~s~~ 339 (448)
...|.-++...+ + .+. .+.. .......++|.|+|.+.++.+
T Consensus 109 ~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 109 ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp CSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 124554544321 1 111 1221 123468899999998666644
No 342
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.24 E-value=0.49 Score=40.96 Aligned_cols=136 Identities=12% Similarity=0.132 Sum_probs=76.7
Q ss_pred EEEeCCCCCeeEEEEeCCCcEEEEecCCceE------EEEee---cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCc
Q 013184 241 EIYNSPSGGIHFMASNNDCGVRDFDMERFQL------SKHFS---FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGK 311 (448)
Q Consensus 241 ~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~------~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 311 (448)
.+.++|+|. +.++ .+|.++-.+..+.+. ...+. ... ..++.|.|+|.+.++ .||.|.-++..+..
T Consensus 45 ~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~~~ 118 (236)
T 1tl2_A 45 FLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQSD 118 (236)
T ss_dssp EEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCCST
T ss_pred eEEECCCcc-EEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCcCC
Confidence 555699776 3333 677777777654111 12221 111 478999999998887 55888877763321
Q ss_pred eeE------ee-ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCc-----ceEEEc-cCCCCeEEEEEcCCCCEE
Q 013184 312 AIM------PL-CGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSK-----SVAVLK-GNLGAIRSIRFTSDGNFM 378 (448)
Q Consensus 312 ~~~------~l-~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~-~~~~~v~~l~~sp~g~~l 378 (448)
.-. .+ .+--..+..|.+.|+|.+.+.. |+.+.-+....... ....+. ..-...+.+.|+|+|...
T Consensus 119 ~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~ 196 (236)
T 1tl2_A 119 TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLF 196 (236)
T ss_dssp TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEE
T ss_pred CCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEE
Confidence 110 11 1112457899999999988777 77643222111000 111111 222344557799998877
Q ss_pred EEEeCCCe
Q 013184 379 AMAEPADF 386 (448)
Q Consensus 379 ~s~~~d~~ 386 (448)
++. ++.
T Consensus 197 ~v~--~g~ 202 (236)
T 1tl2_A 197 GVQ--GGK 202 (236)
T ss_dssp EEE--TTE
T ss_pred EEe--CCe
Confidence 776 663
No 343
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.09 E-value=5 Score=43.97 Aligned_cols=226 Identities=10% Similarity=0.066 Sum_probs=123.4
Q ss_pred eeEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCC---CeeEEEEeC-CCcEEEEecCC
Q 013184 193 QVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSG---GIHFMASNN-DCGVRDFDMER 268 (448)
Q Consensus 193 ~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~s~-dg~v~iwd~~~ 268 (448)
.|...+.++.+++.++ .+.+.++.++........+. .-...+.|+++...+.+ ...+++|.. |++|+|+.+.+
T Consensus 515 ~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~~~--~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 515 NISVASCNSSQVVVAV-GRALYYLQIHPQELRQISHT--EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEEEE--ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeeccc--CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 4666677677777775 67888888775433222222 22334667766333332 347888886 99999999998
Q ss_pred ceEEEEeec--CCCeeEEEECC--CCCEEEEEecCCcEEEE--ECCCCceeEe---eecCCCcEEEEEEcCCCCEEEEEe
Q 013184 269 FQLSKHFSF--PWPVNHTSLSP--DGKLLVIVGDNPEGILV--DSQTGKAIMP---LCGHLDFSFASAWHPDGRIFATGN 339 (448)
Q Consensus 269 ~~~~~~~~~--~~~v~~~~~sp--~~~~l~~~~~d~~i~i~--d~~~~~~~~~---l~~h~~~v~~~~~~p~g~~l~s~~ 339 (448)
.+.+..... ...+.++.+.. ...+|.+|-.||.+.-+ |..+|+.... .-| ..++.-..+...|..-+.+.
T Consensus 592 l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~ 670 (1158)
T 3ei3_A 592 FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFAC 670 (1158)
T ss_dssp CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEE
T ss_pred CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEE
Confidence 776655443 22444544432 33567788889887554 4455554321 222 23443333433444323333
Q ss_pred CCCcEEEEEccCCCcceEEEccCCCCe-EEEEEcCCC--CEEEEEeCCCeEEEEECCCCcee-eeeecCcCceEEEEEcc
Q 013184 340 QDKTCRVWDVRNLSKSVAVLKGNLGAI-RSIRFTSDG--NFMAMAEPADFVHVYDAKNGFEK-EQEIDFFGEISGMTFSP 415 (448)
Q Consensus 340 ~d~~i~iwd~~~~~~~~~~~~~~~~~v-~~l~~sp~g--~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~~v~~~~fsp 415 (448)
.+....++--+ ++.... .-...++ ....|+... .-++..+ ++.++|..+...... .+.......+..++++|
T Consensus 671 s~rp~liy~~~--~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~ 746 (1158)
T 3ei3_A 671 SDRPTVIYSSN--HKLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQE 746 (1158)
T ss_dssp SSSCEEEEESS--SSEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEG
T ss_pred CCCCEEEEEcC--CceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcC
Confidence 34444555432 222111 1111223 234454321 2344433 455899887543322 22333556799999999
Q ss_pred CCCeEEEEEec
Q 013184 416 DTEALFIGVWD 426 (448)
Q Consensus 416 dg~~L~~~~~D 426 (448)
..+.++++..+
T Consensus 747 ~~~~~~v~~~~ 757 (1158)
T 3ei3_A 747 VSQCFGVLSSR 757 (1158)
T ss_dssp GGTEEEEEEEE
T ss_pred CCCEEEEEEEe
Confidence 98887776544
No 344
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.52 E-value=1.1 Score=41.76 Aligned_cols=144 Identities=10% Similarity=0.055 Sum_probs=85.7
Q ss_pred eEEEEeCCCcEEEEecCCceEEEEeecC--CCeeEEEEC--CCCCEEEEE--ecCCcEEEEECCCCceeEeeec----CC
Q 013184 251 HFMASNNDCGVRDFDMERFQLSKHFSFP--WPVNHTSLS--PDGKLLVIV--GDNPEGILVDSQTGKAIMPLCG----HL 320 (448)
Q Consensus 251 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~v~~~~~s--p~~~~l~~~--~~d~~i~i~d~~~~~~~~~l~~----h~ 320 (448)
++++++.||.|.-+|.++|+.+..++.. .++....-. +.+..++++ +.||.+..++..+|.....+.. ..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 7889999999999999999999998854 333322111 112244444 5899999999988865443331 22
Q ss_pred CcEEE---EEE-c----CCCCEEEEEeCCCcEEEEEccCCCcceEEEccCC--CC-----eEEEEEc-----CCCCEEEE
Q 013184 321 DFSFA---SAW-H----PDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNL--GA-----IRSIRFT-----SDGNFMAM 380 (448)
Q Consensus 321 ~~v~~---~~~-~----p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~-----v~~l~~s-----p~g~~l~s 380 (448)
.++.. ... . ..+..+++|+.++.+...|+++ ++.+..+.... +. ..|.+.. -.+..|+.
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~t-G~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLN-GEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp CSEEEECC----------CCEEEEECEEEEEEEEEETTT-CCEEEEESTTCBCC--------------------CCEEEE
T ss_pred cccccCCCceeecccccccCCEEEEEecCCEEEEEECCC-CcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 22221 000 0 0355788999999999999987 77777665321 10 1111111 12356777
Q ss_pred EeCCCeEEEEECCCCc
Q 013184 381 AEPADFVHVYDAKNGF 396 (448)
Q Consensus 381 ~~~d~~v~vwd~~~~~ 396 (448)
+..+..|.+.+ ++|.
T Consensus 171 g~~~y~v~~~~-~sG~ 185 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA 185 (339)
T ss_dssp EEEEEECEECC-TTSC
T ss_pred ecceEEEEEEC-CCCC
Confidence 76666666666 4443
No 345
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=92.09 E-value=7.3 Score=35.89 Aligned_cols=235 Identities=6% Similarity=-0.035 Sum_probs=131.0
Q ss_pred eeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-cCCEEEEEeCCCeEEEEE
Q 013184 139 VWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-RDNLLIAGGFQGELICKY 217 (448)
Q Consensus 139 ~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-~~~~lvsg~~dg~i~vw~ 217 (448)
+-.|...-+.+-....+.++|+.+...-+...+. ..|.-..| +.+.|+.-+ +..|..|+
T Consensus 73 IMnP~~~ViALrag~~LQiFnletK~klks~~~~-------------------e~VvfWkWis~~~L~lVT-~taVyHWs 132 (365)
T 2xzh_A 73 IMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-------------------DDVTFWKWISLNTVALVT-DNAVYHWS 132 (365)
T ss_dssp EECSSSSEEEEEETTEEEEEETTTTEEEEEEECS-------------------SCEEEEEECSSSEEEEEE-SSEEEEEE
T ss_pred eeCCCccEEEEecCCeEEEechHHhhhhcceecC-------------------CccEEEEecCCCeEEEEc-CCcEEEEc
Confidence 3345556566666778999998775544444443 13566666 666666655 45788999
Q ss_pred cCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEe------CCCcEEEEecCCceEEEEeecCCCeeEEEEC--CC
Q 013184 218 LDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASN------NDCGVRDFDMERFQLSKHFSFPWPVNHTSLS--PD 289 (448)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~s--p~ 289 (448)
+.....+....-....-.....+....+++.+..+++|- -.|.+.+|..+.+.....-.|......+.+. +.
T Consensus 133 ~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~ 212 (365)
T 2xzh_A 133 MEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAE 212 (365)
T ss_dssp SSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSS
T ss_pred ccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCC
Confidence 976442211111111112244555556788876666663 2477889988865433222233222121111 11
Q ss_pred -CCEEEEEec---CCcEEEEECCCC---ce------eEeee---cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCC
Q 013184 290 -GKLLVIVGD---NPEGILVDSQTG---KA------IMPLC---GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLS 353 (448)
Q Consensus 290 -~~~l~~~~~---d~~i~i~d~~~~---~~------~~~l~---~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~ 353 (448)
.++++.+.. .+.++|.++... .. +..+- .-.+..-++..++.-..+..-+.-|.+.+||+.+ +
T Consensus 213 ~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleT-g 291 (365)
T 2xzh_A 213 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-G 291 (365)
T ss_dssp CEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-C
T ss_pred CceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEccc-C
Confidence 123343332 257888887432 11 11111 1356677888888777888889999999999987 7
Q ss_pred cceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 013184 354 KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 354 ~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~ 394 (448)
.++..-+-...+|...+-+....=+++-...|.|.-..+..
T Consensus 292 t~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 292 TCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp CEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred cEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 77766555555565444433333333334555555444443
No 346
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=92.08 E-value=8.8 Score=36.84 Aligned_cols=235 Identities=6% Similarity=-0.035 Sum_probs=132.8
Q ss_pred eeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-cCCEEEEEeCCCeEEEEE
Q 013184 139 VWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-RDNLLIAGGFQGELICKY 217 (448)
Q Consensus 139 ~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-~~~~lvsg~~dg~i~vw~ 217 (448)
+-.|...-+.+-....+.++|+.+...-....+.. .|.-..| +.+.|+..+ +..|..|+
T Consensus 72 IMnP~~~iiALrag~~lQiFnle~K~klks~~~~e-------------------~VvfWkWis~~~l~lVT-~taVyHWs 131 (494)
T 1bpo_A 72 IMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD-------------------DVTFWKWISLNTVALVT-DNAVYHWS 131 (494)
T ss_dssp EECSSSSCEEEEETTEEEEEETTTTEEEEEEECSS-------------------CCCEEEEEETTEEEEEC-SSEEEEEE
T ss_pred eeCCCCcEEEEecCCeEEEEchHHhhhhcceecCC-------------------CceEEEecCCCeEEEEc-CCeeEEec
Confidence 34455566666667889999987755545444442 2444455 566665554 45788999
Q ss_pred cCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEe------CCCcEEEEecCCceEEEEeecCCCeeEEEECC--C
Q 013184 218 LDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASN------NDCGVRDFDMERFQLSKHFSFPWPVNHTSLSP--D 289 (448)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp--~ 289 (448)
+.....+....-....-..+..+....+++.+..+++|- -.|.+.+|..+.+.....-.|......+.+.- .
T Consensus 132 i~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~ 211 (494)
T 1bpo_A 132 MEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAE 211 (494)
T ss_dssp SSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSS
T ss_pred ccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCC
Confidence 975432211111111112245555556788886666653 24778899887654322222433222222211 1
Q ss_pred -CCEEEEEec---CCcEEEEECCCC---ce-----eEe-ee---cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCC
Q 013184 290 -GKLLVIVGD---NPEGILVDSQTG---KA-----IMP-LC---GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLS 353 (448)
Q Consensus 290 -~~~l~~~~~---d~~i~i~d~~~~---~~-----~~~-l~---~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~ 353 (448)
..+++.+.. .+.+.|.++... .. ... +- .-.+...++..++.-..+..-..-|.+.+||+.+ +
T Consensus 212 ~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleT-g 290 (494)
T 1bpo_A 212 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-G 290 (494)
T ss_dssp EEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-C
T ss_pred CceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccc-c
Confidence 123343433 268888887432 11 111 11 2356677888998878888889999999999987 7
Q ss_pred cceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 013184 354 KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 354 ~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~ 394 (448)
.++..-+-...+|...+-+....=+++-...|.|.-..+..
T Consensus 291 t~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 291 TCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp CEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred eeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 77766555555665555444433344444666555554443
No 347
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.81 E-value=11 Score=41.82 Aligned_cols=202 Identities=6% Similarity=-0.005 Sum_probs=104.5
Q ss_pred CCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-cCCEEEEEeCCCeEEEEEcCC
Q 013184 142 TSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-RDNLLIAGGFQGELICKYLDQ 220 (448)
Q Consensus 142 ~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-~~~~lvsg~~dg~i~vw~~~~ 220 (448)
|....+.+-.+.++.++|+.+...-....+. ..|.-..| +.+.|+..+ +..|..|++..
T Consensus 75 P~~~iiALrag~~lQiFnl~~k~klks~~~~-------------------e~VvfWkWis~~~l~lVT-~~aVyHW~~~~ 134 (1630)
T 1xi4_A 75 PASKVIALKAGKTLQIFNIEMKSKMKAHTMT-------------------DDVTFWKWISLNTVALVT-DNAVYHWSMEG 134 (1630)
T ss_pred CCcceEEEecCCeEEEeehHHhhhhcccccC-------------------CCceEEEecCCCeeEEEc-CCeEEEeccCC
Confidence 4445455555677888887653322222222 13555566 555555554 45688999965
Q ss_pred CCceeEEEeecCC--CCceeeEEEEeCCCCCeeEEEEe------CCCcEEEEecCCceEEEEee-cCCCeeEEEEC--C-
Q 013184 221 PGVSFCSRTTYDE--NAITNAVEIYNSPSGGIHFMASN------NDCGVRDFDMERFQLSKHFS-FPWPVNHTSLS--P- 288 (448)
Q Consensus 221 ~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~s--p- 288 (448)
...+ .++...+ -..+..+....+++....+++|- -.|.+.+|..+.+... .++ |.+....+... +
T Consensus 135 ~s~P--~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ-~iegha~~F~~~~~~~~~~ 211 (1630)
T 1xi4_A 135 ESQP--VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEGHAASFAQFKMEGNAE 211 (1630)
T ss_pred CCcc--HHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch-hhhHhHhhhheeccCCCCC
Confidence 3311 1111111 11233444445777776666653 3578888888754322 222 32222222221 1
Q ss_pred CCCEEEEEec---CCcEEEEECCCC---cee------Eeee---cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCC
Q 013184 289 DGKLLVIVGD---NPEGILVDSQTG---KAI------MPLC---GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLS 353 (448)
Q Consensus 289 ~~~~l~~~~~---d~~i~i~d~~~~---~~~------~~l~---~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~ 353 (448)
...+++.+.. .+.+.|.++... ... ..+. .-.+...++..++.-..+..-+.-|.|.++|+.+ +
T Consensus 212 ~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t-~ 290 (1630)
T 1xi4_A 212 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-G 290 (1630)
T ss_pred CceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEeccc-c
Confidence 1223332222 257888877432 111 0111 1235556778888777788888899999999987 6
Q ss_pred cceEEEccCCCCeE
Q 013184 354 KSVAVLKGNLGAIR 367 (448)
Q Consensus 354 ~~~~~~~~~~~~v~ 367 (448)
.++..-+-...+|.
T Consensus 291 ~~i~~~ris~~~iF 304 (1630)
T 1xi4_A 291 TCIYMNRISGETIF 304 (1630)
T ss_pred hhhhhccccCCceE
Confidence 65544333333443
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.09 E-value=1.4 Score=43.61 Aligned_cols=121 Identities=13% Similarity=0.138 Sum_probs=80.4
Q ss_pred cEEEEecCC----c-eEEEEeecCCCeeEEEECCCCCEEEEEe-cCCcEEEEECCCC------ce-------eEeeecCC
Q 013184 260 GVRDFDMER----F-QLSKHFSFPWPVNHTSLSPDGKLLVIVG-DNPEGILVDSQTG------KA-------IMPLCGHL 320 (448)
Q Consensus 260 ~v~iwd~~~----~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~------~~-------~~~l~~h~ 320 (448)
.|.+.|.+. + .....+..+.....+.++|+|+++++++ -+.++.++|...- +. +...+. .
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-G 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-G 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-C
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-C
Confidence 466777654 2 2344445556667889999999998877 4778999998731 11 222332 2
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEEccCC---------CcceEEEccCCCCeEEEEE------cCCCCEEEEEe
Q 013184 321 DFSFASAWHPDGRIFATGNQDKTCRVWDVRNL---------SKSVAVLKGNLGAIRSIRF------TSDGNFMAMAE 382 (448)
Q Consensus 321 ~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~v~~l~~------sp~g~~l~s~~ 382 (448)
-.....+|.++|....|-.-|..|.-|++... ...+..+.-|-.+- .+.- .|+|++|++..
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEE
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEec
Confidence 34567899999966666678999999998642 13555666565433 2322 57899999874
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=90.53 E-value=9.6 Score=36.99 Aligned_cols=119 Identities=15% Similarity=0.111 Sum_probs=66.5
Q ss_pred CCcEEEEEEcCCCC-EEEEEeCCCcEEEEEccCC--CcceEEEc---------cCCCCeEEEEEcCC----CCEEEEEe-
Q 013184 320 LDFSFASAWHPDGR-IFATGNQDKTCRVWDVRNL--SKSVAVLK---------GNLGAIRSIRFTSD----GNFMAMAE- 382 (448)
Q Consensus 320 ~~~v~~~~~~p~g~-~l~s~~~d~~i~iwd~~~~--~~~~~~~~---------~~~~~v~~l~~sp~----g~~l~s~~- 382 (448)
......|+|.|+|. .|+++.+.|.|++++.... ...+..+. ........|+|+|+ +.+.++-+
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 34567899999995 4555578899999975321 12223222 11356788999996 43333322
Q ss_pred CC-----------CeEEEEECCCC----------ceeeeee--cCcCceEEEEEccCCCeEEEEEecCC-----------
Q 013184 383 PA-----------DFVHVYDAKNG----------FEKEQEI--DFFGEISGMTFSPDTEALFIGVWDRT----------- 428 (448)
Q Consensus 383 ~d-----------~~v~vwd~~~~----------~~~~~~~--~~~~~v~~~~fspdg~~L~~~~~D~~----------- 428 (448)
.. ..|.-|.+..+ +.+..+. ...-.-..|+|.|||. |+++.-|+.
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd~~~~~~~~~~~q~ 171 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGDGMITLDDMEEMDG 171 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECCTTCCHHHHHHCTT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCCCCCCCCccccccC
Confidence 11 13444655421 1222222 1112357899999995 555544443
Q ss_pred ----cceEEEEeccc
Q 013184 429 ----YGSLLQYNRCR 439 (448)
Q Consensus 429 ----~~~ll~~~~~~ 439 (448)
.|++|.+....
T Consensus 172 ~~~~~GkIlRi~~dg 186 (463)
T 2wg3_C 172 LSDFTGSVLRLDVDT 186 (463)
T ss_dssp CCSCTTEEEEEBCCC
T ss_pred cCCCCeeEEEEECCC
Confidence 46788776543
No 350
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=88.68 E-value=16 Score=34.33 Aligned_cols=163 Identities=9% Similarity=0.101 Sum_probs=97.7
Q ss_pred cEEEEecCCc--eEEEEeecC-------CCeeEEEEC---CC----CCEEEEEe-cCCcEEEEECCCCceeEeee-----
Q 013184 260 GVRDFDMERF--QLSKHFSFP-------WPVNHTSLS---PD----GKLLVIVG-DNPEGILVDSQTGKAIMPLC----- 317 (448)
Q Consensus 260 ~v~iwd~~~~--~~~~~~~~~-------~~v~~~~~s---p~----~~~l~~~~-~d~~i~i~d~~~~~~~~~l~----- 317 (448)
+|.+||+.+. ++++.+..+ ..++.+++. |. +.+++.+. ..+.|.++|+.+++..+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888888 888877643 346777776 22 23333333 45689999999887654431
Q ss_pred ---------cC----CCcEEEEEEcCC----CCEEEEEeCCCcEEEEEcc-----CC--CcceEEEccC--CCCeEEEEE
Q 013184 318 ---------GH----LDFSFASAWHPD----GRIFATGNQDKTCRVWDVR-----NL--SKSVAVLKGN--LGAIRSIRF 371 (448)
Q Consensus 318 ---------~h----~~~v~~~~~~p~----g~~l~s~~~d~~i~iwd~~-----~~--~~~~~~~~~~--~~~v~~l~~ 371 (448)
|. ...+..++.+|+ ++.|.-....+ -++|.+. +. ...++.+-.. .+.-..+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 10 247889999998 77777776655 3555543 11 1222222211 122334567
Q ss_pred c-CCCCEEEEEeCCCeEEEEECCC-Cc---eeeeee--cCcCceEEEEEccCCCeEEEE
Q 013184 372 T-SDGNFMAMAEPADFVHVYDAKN-GF---EKEQEI--DFFGEISGMTFSPDTEALFIG 423 (448)
Q Consensus 372 s-p~g~~l~s~~~d~~v~vwd~~~-~~---~~~~~~--~~~~~v~~~~fspdg~~L~~~ 423 (448)
. .+|...++--..+.|..|+..+ .. ....+. ..-..+.++++.++|..-+.+
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 5 5777677767778999999875 22 111111 122458889998888644444
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=88.22 E-value=17 Score=34.05 Aligned_cols=140 Identities=7% Similarity=-0.041 Sum_probs=70.2
Q ss_pred CeeEEEECC-C-CCEEEEEecCCcEEEEECCCCceeEeeec-------------------CCCcEEEEEEcCC-CCEEEE
Q 013184 280 PVNHTSLSP-D-GKLLVIVGDNPEGILVDSQTGKAIMPLCG-------------------HLDFSFASAWHPD-GRIFAT 337 (448)
Q Consensus 280 ~v~~~~~sp-~-~~~l~~~~~d~~i~i~d~~~~~~~~~l~~-------------------h~~~v~~~~~~p~-g~~l~s 337 (448)
.|.++++.| + ...+.+++..+.|...+ ..|+.-..+.. ....+.+|.++|. ...|+.
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 367788887 2 55666666665555442 23332222211 1235788999983 344444
Q ss_pred EeCCCcEEEEEccCCCcceEEEccC-------------CCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeeeeec
Q 013184 338 GNQDKTCRVWDVRNLSKSVAVLKGN-------------LGAIRSIRFTSD-GNFMAMAEPADFVHVYDAKNGFEKEQEID 403 (448)
Q Consensus 338 ~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~~v~~l~~sp~-g~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 403 (448)
+...+.| |-....++.-..+... ...+.++.+.|. ...|.++...+ |...+ ..+.....+..
T Consensus 195 g~~~ggl--~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~ 270 (394)
T 3b7f_A 195 GMSSGGV--FESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGD 270 (394)
T ss_dssp EEETBEE--EEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGG
T ss_pred EECCCCE--EEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCC
Confidence 4433333 3222223332222110 124889999986 35666666554 55444 23333322221
Q ss_pred -Cc----CceEEEEEcc-CCCeEEEEE
Q 013184 404 -FF----GEISGMTFSP-DTEALFIGV 424 (448)
Q Consensus 404 -~~----~~v~~~~fsp-dg~~L~~~~ 424 (448)
.. ..+..++++| +...|+++.
T Consensus 271 ~l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 271 AMPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp GSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred CCCCCCccceEEEEECCCCCCEEEEEe
Confidence 11 2356788877 345566654
No 352
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=83.55 E-value=3.8 Score=41.06 Aligned_cols=61 Identities=21% Similarity=0.435 Sum_probs=43.9
Q ss_pred CeEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCceeeeeec-CcCceEEEEEccCCCeEEEEEe
Q 013184 365 AIRSIRFTSDGNFMAMAEPA------------DFVHVYDAKNGFEKEQEID-FFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 365 ~v~~l~~sp~g~~l~s~~~d------------~~v~vwd~~~~~~~~~~~~-~~~~v~~~~fspdg~~L~~~~~ 425 (448)
..-.|+|+|.|+++++-..+ +.+.+.+..+++....+.. ...++++++|+||++.|++...
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvniQ 550 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEEE
Confidence 34678999999966554322 3466777777766555544 3468999999999999998854
No 353
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=82.00 E-value=33 Score=31.97 Aligned_cols=132 Identities=10% Similarity=-0.009 Sum_probs=67.6
Q ss_pred CeeEEEECCC-CCEEEEEecCCcEEEEECCCCceeEeeec--CC---CcEEEEEEcC-CCCEEEEEeC-----------C
Q 013184 280 PVNHTSLSPD-GKLLVIVGDNPEGILVDSQTGKAIMPLCG--HL---DFSFASAWHP-DGRIFATGNQ-----------D 341 (448)
Q Consensus 280 ~v~~~~~sp~-~~~l~~~~~d~~i~i~d~~~~~~~~~l~~--h~---~~v~~~~~~p-~g~~l~s~~~-----------d 341 (448)
.+.++.+.|. ...|+++...+ |...+ ..++....+.. .. ..+++++++| +...|..+.. +
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~ 310 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPG 310 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCC
T ss_pred ceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCC
Confidence 4789999985 46677666544 44443 23433333321 11 3567888887 3334444431 3
Q ss_pred CcEEEEEccCCCcceEEEccC-C--C----C-eEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEE
Q 013184 342 KTCRVWDVRNLSKSVAVLKGN-L--G----A-IRSIRFTSD-GNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMT 412 (448)
Q Consensus 342 ~~i~iwd~~~~~~~~~~~~~~-~--~----~-v~~l~~sp~-g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~ 412 (448)
+...||.....++.-..+... . . . ...++++|. ...|+.++..+.|..-. ..|..-..+......+.++.
T Consensus 311 ~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~-D~G~tW~~~~~~lp~~~~v~ 389 (394)
T 3b7f_A 311 GKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASA-DEGEHWQCIASHLPHIYAVQ 389 (394)
T ss_dssp SSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEES-STTSBCEEEECSCSCEEEEE
T ss_pred CceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEEC-CCCCCceEcccCCCCeeEEE
Confidence 335566655434444433211 1 0 0 135788874 34566666555554332 34444444444445577776
Q ss_pred Ec
Q 013184 413 FS 414 (448)
Q Consensus 413 fs 414 (448)
|.
T Consensus 390 ~~ 391 (394)
T 3b7f_A 390 SA 391 (394)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 354
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=80.98 E-value=7.7 Score=38.53 Aligned_cols=63 Identities=21% Similarity=0.425 Sum_probs=45.8
Q ss_pred CCeEEEEEcCCCCEEEEEeC------------CCeEEEEECCCCceeeeeec-CcCceEEEEEccCCCeEEEEEec
Q 013184 364 GAIRSIRFTSDGNFMAMAEP------------ADFVHVYDAKNGFEKEQEID-FFGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 364 ~~v~~l~~sp~g~~l~s~~~------------d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~fspdg~~L~~~~~D 426 (448)
.....|.|.++|.+.++... .+.|..++..+++....+.. ...++++++|+||++.|+++...
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQH 551 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQH 551 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEES
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEeC
Confidence 35678999999987774322 22677778777765544443 34679999999999999999754
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=77.95 E-value=52 Score=31.77 Aligned_cols=156 Identities=15% Similarity=0.139 Sum_probs=79.2
Q ss_pred CCeeEEEECCCCCEEEEEecCC-----------------cEEEEECCCC---------------------ceeEeeecCC
Q 013184 279 WPVNHTSLSPDGKLLVIVGDNP-----------------EGILVDSQTG---------------------KAIMPLCGHL 320 (448)
Q Consensus 279 ~~v~~~~~sp~~~~l~~~~~d~-----------------~i~i~d~~~~---------------------~~~~~l~~h~ 320 (448)
.....++|.|||.+.++.++.+ .|.-.+.... ..+. -.+|.
T Consensus 139 H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~-a~G~R 217 (463)
T 2wg3_C 139 HLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVF-AHGLH 217 (463)
T ss_dssp SCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEE-EECCS
T ss_pred ccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEE-EECCC
Confidence 4467899999999888776543 2333333321 0111 12343
Q ss_pred CcEEEEEEcCC-----CC-EEEEEeCCC----cEEEEEccCC-----CcceEEEccCC-CCeEEEEEcC-------CCCE
Q 013184 321 DFSFASAWHPD-----GR-IFATGNQDK----TCRVWDVRNL-----SKSVAVLKGNL-GAIRSIRFTS-------DGNF 377 (448)
Q Consensus 321 ~~v~~~~~~p~-----g~-~l~s~~~d~----~i~iwd~~~~-----~~~~~~~~~~~-~~v~~l~~sp-------~g~~ 377 (448)
.+ ..++|+|. |. .+..+...| .-.|..+... ..++..+..+. .++..+.|-. .|.+
T Consensus 218 Np-~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~ 296 (463)
T 2wg3_C 218 DP-GRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSY 296 (463)
T ss_dssp SC-CBEEEESSCSSTTCSEEEEEECC------CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCE
T ss_pred Cc-ceEEECCCCCCcccceEEEecccCCCCCCCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceE
Confidence 33 46899996 44 344333212 2344444321 13555555332 4667777743 2345
Q ss_pred EEEEeCCCeEEEEECCCCce---eeee-e--------cCcCceEEEEEccCCCeEEEEEec----CCcceEEEEec
Q 013184 378 MAMAEPADFVHVYDAKNGFE---KEQE-I--------DFFGEISGMTFSPDTEALFIGVWD----RTYGSLLQYNR 437 (448)
Q Consensus 378 l~s~~~d~~v~vwd~~~~~~---~~~~-~--------~~~~~v~~~~fspdg~~L~~~~~D----~~~~~ll~~~~ 437 (448)
|+ +...+.|....+..... ...+ . ...+.+.++.+.|||.++++.... ..-+.++++..
T Consensus 297 f~-~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~~ 371 (463)
T 2wg3_C 297 VF-GDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVD 371 (463)
T ss_dssp EE-EETTSCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEEC
T ss_pred EE-ecCCCcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEecC
Confidence 54 44456666666543321 1111 1 123679999999999877665421 24467777763
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.76 E-value=83 Score=33.53 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=30.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEE
Q 013184 322 FSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVL 359 (448)
Q Consensus 322 ~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~ 359 (448)
.+.+++..++..++++-+.|+++|+|++.+ ++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t-~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLST-NQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTT-TEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCC-CCeEeee
Confidence 467778888889999999999999999977 6666654
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=75.91 E-value=47 Score=35.46 Aligned_cols=34 Identities=12% Similarity=0.044 Sum_probs=26.4
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeE
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFC 226 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~ 226 (448)
.+.+++. +..++++-+.|+++++|++.++.....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 4555555 667999999999999999998765433
No 358
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=70.54 E-value=23 Score=38.68 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=28.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEE
Q 013184 323 SFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVL 359 (448)
Q Consensus 323 v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~ 359 (448)
+.+++..++..++++-+.|+++|||++.+ ++++.+.
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t-~~~v~t~ 275 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLST-NQCVETI 275 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTT-TEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCC-CCeEEee
Confidence 34556667888999999999999999987 6776654
No 359
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=69.75 E-value=60 Score=28.78 Aligned_cols=181 Identities=10% Similarity=-0.023 Sum_probs=91.8
Q ss_pred eeEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC-ceE
Q 013184 193 QVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER-FQL 271 (448)
Q Consensus 193 ~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~ 271 (448)
.|..++......+.-. +|.|..|-....+..- +.......+..+.. ...+.++. . ||.|..|-... +++
T Consensus 25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg---~p~~~~~~i~~ia~----G~~hs~~l-~-~G~v~~wG~n~~Gql 94 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLT---MPAATQSGVDAIAA----GNYHSLAL-K-DGEVIAWGGNEDGQT 94 (282)
T ss_dssp SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTS---CCGGGGSCCCEEEE----CSSEEEEE-E-TTEEEEEECCTTSTT
T ss_pred CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCC---CCccCCCCEEEEEe----CCCEEEEE-E-CCEEEEeeCCCCCCC
Confidence 5778888444444445 9999999876544211 01011111223322 22333444 4 89999996543 221
Q ss_pred EEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCC-CceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 013184 272 SKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQT-GKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVR 350 (448)
Q Consensus 272 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~-~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~ 350 (448)
-.-......|..++... ...++.. ++.|..|-... ++.-... .....|..++..... .++ -. +|.|..|-..
T Consensus 95 g~P~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~-~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n 167 (282)
T 3qhy_B 95 TVPAEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPA-EAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDN 167 (282)
T ss_dssp CCCGGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCG-GGGSSEEEEEECSSE-EEE-EE-TTEEEEEECC
T ss_pred CCCcccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCc-cCCCCeEEEEcccCE-EEE-EE-CCEEEEecCC
Confidence 11111234566666653 3444455 89999996543 3221111 123446666554332 222 23 6888888765
Q ss_pred CCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 013184 351 NLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 351 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~ 394 (448)
..++.- .-..-...|..++.... ..++. .+|.|+.|=...
T Consensus 168 ~~gqlg-~p~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 168 YFGQTT-VPAEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNR 207 (282)
T ss_dssp TTSTTS-CCGGGGSSEEEEEECSS-EEEEE--ETTEEEEEECCT
T ss_pred CCCCCC-CceecCCCeEEEEecCC-EEEEE--ECCeEEEEECCC
Confidence 422221 11111345777766543 23333 589999997543
No 360
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=61.81 E-value=1e+02 Score=28.62 Aligned_cols=193 Identities=14% Similarity=0.066 Sum_probs=102.5
Q ss_pred eeEEEEecCCEEEEEeCCCeEEEEEcCCCC---------ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEE
Q 013184 193 QVSTLAVRDNLLIAGGFQGELICKYLDQPG---------VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRD 263 (448)
Q Consensus 193 ~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~i 263 (448)
.|..++......++-..+|.|..|-....+ ......+.......+..+.+ ..|..+.++-..+|.|+.
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i---~~G~~h~~al~~~G~v~~ 130 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAV---NSGGKHCLALSSEGEVYS 130 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEE---CTTCSEEEEEETTSCEEE
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEE---CcCCCeEEEEcCCCCEEE
Confidence 566777777777777889999999754321 11112222222222333444 334446677788999999
Q ss_pred EecCC-c----------eEEEEee--cCCCeeEEEECCCCCEEEEEecCCcEEEEECCC-Cc----------eeEeeec-
Q 013184 264 FDMER-F----------QLSKHFS--FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQT-GK----------AIMPLCG- 318 (448)
Q Consensus 264 wd~~~-~----------~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~-~~----------~~~~l~~- 318 (448)
|-... + .....+. ....|..++.. ....++...+|.|+.|=... ++ ....+..
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~ 208 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEAL 208 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGG
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEeccc
Confidence 95432 1 1111122 12245565554 45666777889999996432 11 0111111
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCc----------ceEEEcc-CCCCeEEEEEcCCCCEEEEEeCCCeE
Q 013184 319 HLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSK----------SVAVLKG-NLGAIRSIRFTSDGNFMAMAEPADFV 387 (448)
Q Consensus 319 h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~----------~~~~~~~-~~~~v~~l~~sp~g~~l~s~~~d~~v 387 (448)
....|..++......+.+.-..+|.|..|-....++ ....+.. ....|..++... .+.++-..+|.|
T Consensus 209 ~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~--~hs~alt~~G~v 286 (389)
T 3kci_A 209 QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS--QFSVALTKSGAV 286 (389)
T ss_dssp TTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET--TEEEEEETTSCE
T ss_pred CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC--CEEEEEeCCCeE
Confidence 223466666544335566667889999996532111 0111111 112455555543 344444678888
Q ss_pred EEEEC
Q 013184 388 HVYDA 392 (448)
Q Consensus 388 ~vwd~ 392 (448)
+.|=.
T Consensus 287 ~~wG~ 291 (389)
T 3kci_A 287 YTWGK 291 (389)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 88864
No 361
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=58.96 E-value=1.6e+02 Score=30.12 Aligned_cols=38 Identities=13% Similarity=-0.089 Sum_probs=30.7
Q ss_pred eeeEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEe
Q 013184 192 TQVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRT 229 (448)
Q Consensus 192 ~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~ 229 (448)
..|.++.++..++++-+.|.++|+|++.+........+
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 46888888999999999999999999998764433333
No 362
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=58.82 E-value=96 Score=27.37 Aligned_cols=234 Identities=15% Similarity=0.067 Sum_probs=116.3
Q ss_pred eeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecC-CEEEEEeCCCeEEEEE
Q 013184 139 VWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRD-NLLIAGGFQGELICKY 217 (448)
Q Consensus 139 ~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~-~~lvsg~~dg~i~vw~ 217 (448)
+.+-..|.+++. ++.|..|=... .|.+. .|. .....|..++... ..++. . +|.|..|-
T Consensus 29 ia~G~~h~~~l~-~G~v~~wG~n~---------~Gqlg----~p~-----~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG 87 (282)
T 3qhy_B 29 IAGGYFHGLALK-GGKVLGWGANL---------NGQLT----MPA-----ATQSGVDAIAAGNYHSLAL-K-DGEVIAWG 87 (282)
T ss_dssp EEECSSEEEEEE-TTEEEEEECCS---------SSTTS----CCG-----GGGSCCCEEEECSSEEEEE-E-TTEEEEEE
T ss_pred EEeCCCeEEEEE-CCEEEEEeCCC---------CCCCC----CCc-----cCCCCEEEEEeCCCEEEEE-E-CCEEEEee
Confidence 455566666665 88888886422 11111 010 1123578888844 44444 5 99999998
Q ss_pred cCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC-ceEEEEeecCCCeeEEEECCCCCEEEEE
Q 013184 218 LDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER-FQLSKHFSFPWPVNHTSLSPDGKLLVIV 296 (448)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 296 (448)
....+..- +.......+..+.. |..+.++-. +|.|+.|-... +++-........|..++.... ..++.
T Consensus 88 ~n~~Gqlg---~P~~~~~~v~~ia~-----G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l 156 (282)
T 3qhy_B 88 GNEDGQTT---VPAEARSGVDAIAA-----GAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAV 156 (282)
T ss_dssp CCTTSTTC---CCGGGSSSEEEEEE-----ETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE
T ss_pred CCCCCCCC---CCcccCCCeEEEEC-----cCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEE
Confidence 76544211 00000112223322 222444445 89999996543 222111112345666665432 33333
Q ss_pred ecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCC
Q 013184 297 GDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGN 376 (448)
Q Consensus 297 ~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~ 376 (448)
. ++.|..|-......+..-..-...|..++.... ..++. .+|.|..|=....++.-. -......|..++.... .
T Consensus 157 ~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~~gqlg~-p~~~~~~v~~i~~G~~-h 230 (282)
T 3qhy_B 157 K-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNRYKQTTV-PTEALSGVSAIASGEW-Y 230 (282)
T ss_dssp E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS-EEEEE--ETTEEEEEECCTTSTTCC-CGGGGSSCCEEEECSS-C
T ss_pred E-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC-EEEEE--ECCeEEEEECCCCCCCCC-CcccCCCceEEEcCCC-E
Confidence 4 788998865432111110111245666665433 23333 589999997654222211 1112245777776543 3
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccC
Q 013184 377 FMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPD 416 (448)
Q Consensus 377 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspd 416 (448)
.++.. +|.|+.|=.....++. ....|.+|+-.+.
T Consensus 231 ~~al~--~g~v~~wG~n~~gq~~----v~~~v~~iaaG~~ 264 (282)
T 3qhy_B 231 SLALK--NGKVIAWGSSRTAPSS----VQSGVSSIEAGPN 264 (282)
T ss_dssp EEEEE--TTEEEEESTTCCCCGG----GSSCEEEEEECSS
T ss_pred EEEEE--CCEEEEecCCCCcccc----CCCCcEEEEECcC
Confidence 33333 8999999755432221 1235666665543
No 363
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=58.08 E-value=1.2e+02 Score=28.28 Aligned_cols=170 Identities=13% Similarity=0.117 Sum_probs=93.6
Q ss_pred eEEEEEcCCC--CceeEEEeec---CCCCceeeEEEE-eCCC----CCeeEEEEeCCCcEEEEecCCceEEEEee-----
Q 013184 212 ELICKYLDQP--GVSFCSRTTY---DENAITNAVEIY-NSPS----GGIHFMASNNDCGVRDFDMERFQLSKHFS----- 276 (448)
Q Consensus 212 ~i~vw~~~~~--~~~~~~~~~~---~~~~~~~~v~~~-~~~~----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----- 276 (448)
.|.+||+.+. .......+.. ......+.+.+- ..|. +....++=+....|.|+|+.+++..+...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5677788777 5443333321 112334555553 1222 23233444456789999999877555442
Q ss_pred --------------cCCCeeEEEECCC----CCEEEEEecCC-cEEEEE---CCCC---ceeEeee--cCCCcEEEEEEc
Q 013184 277 --------------FPWPVNHTSLSPD----GKLLVIVGDNP-EGILVD---SQTG---KAIMPLC--GHLDFSFASAWH 329 (448)
Q Consensus 277 --------------~~~~v~~~~~sp~----~~~l~~~~~d~-~i~i~d---~~~~---~~~~~l~--~h~~~v~~~~~~ 329 (448)
....|..++++|+ ++.|+...-.+ .+.-.. ++.. ..++.+- +.......++..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 1246888999997 77777766543 233222 1121 2222221 111334566776
Q ss_pred -CCCCEEEEEeCCCcEEEEEccC-CC--cceEEEc--cCCCCeEEEEEcCCCCEEEEE
Q 013184 330 -PDGRIFATGNQDKTCRVWDVRN-LS--KSVAVLK--GNLGAIRSIRFTSDGNFMAMA 381 (448)
Q Consensus 330 -p~g~~l~s~~~d~~i~iwd~~~-~~--~~~~~~~--~~~~~v~~l~~sp~g~~l~s~ 381 (448)
.+|.++++--....|..|+... .- .....+. .....+..+++.++|.+.+.+
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 6788888878888999999864 11 1222222 233456778877777655544
No 364
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=56.32 E-value=39 Score=33.80 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=42.9
Q ss_pred eeEEEECCCCCEEEEEecC------------CcEEEEECCCCceeEeeecC-CCcEEEEEEcCCCCEEEEEeC
Q 013184 281 VNHTSLSPDGKLLVIVGDN------------PEGILVDSQTGKAIMPLCGH-LDFSFASAWHPDGRIFATGNQ 340 (448)
Q Consensus 281 v~~~~~sp~~~~l~~~~~d------------~~i~i~d~~~~~~~~~l~~h-~~~v~~~~~~p~g~~l~s~~~ 340 (448)
.-.|+|+|.|.+++.-..+ ..+.+.+..+++..+.+.++ ...++.++|+||++.|.+.-|
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvniQ 550 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEEE
Confidence 3568999999866554321 24566677788877666665 367899999999998877643
No 365
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=55.02 E-value=2e+02 Score=29.79 Aligned_cols=146 Identities=10% Similarity=0.042 Sum_probs=77.4
Q ss_pred CCCeeEEEECCC-CCEEEEEecCCcEEEEECCCCceeEeeecC-------CCcEEEEEEcCC-CCEEEEEeCCCc----E
Q 013184 278 PWPVNHTSLSPD-GKLLVIVGDNPEGILVDSQTGKAIMPLCGH-------LDFSFASAWHPD-GRIFATGNQDKT----C 344 (448)
Q Consensus 278 ~~~v~~~~~sp~-~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h-------~~~v~~~~~~p~-g~~l~s~~~d~~----i 344 (448)
.+.|.+++++|. ...+++++..+.|...+ ..|+.-..+..+ ...+.+++++|. ...++.+..... -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 467999999994 56677777777666554 344443333322 246899999984 344444432211 3
Q ss_pred EEEEccCCCcceEEEccC---------CCCeEEEEEcCC-CCEEEEEeCCCeEEEEEC-CCCceeeeeec------CcCc
Q 013184 345 RVWDVRNLSKSVAVLKGN---------LGAIRSIRFTSD-GNFMAMAEPADFVHVYDA-KNGFEKEQEID------FFGE 407 (448)
Q Consensus 345 ~iwd~~~~~~~~~~~~~~---------~~~v~~l~~sp~-g~~l~s~~~d~~v~vwd~-~~~~~~~~~~~------~~~~ 407 (448)
.||-....++.-..+... ...+..++++|. ...+.++...+. ||-. ..|+.-..... ....
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCCSTTTC
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccccCCCCC
Confidence 455444434333222210 113556888874 345555553333 3322 22332222211 1135
Q ss_pred eEEEEEccC-CCeEEEEEec
Q 013184 408 ISGMTFSPD-TEALFIGVWD 426 (448)
Q Consensus 408 v~~~~fspd-g~~L~~~~~D 426 (448)
+..+.++|. +..|+++..+
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEEECTTSTTCEEEEESS
T ss_pred eEEEEECCCCCCEEEEEEcC
Confidence 788999884 5577777655
No 366
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=53.81 E-value=64 Score=32.05 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=44.1
Q ss_pred CeeEEEECCCCCEEEEEec------------CCcEEEEECCCCceeEeeecC-CCcEEEEEEcCCCCEEEEEeC
Q 013184 280 PVNHTSLSPDGKLLVIVGD------------NPEGILVDSQTGKAIMPLCGH-LDFSFASAWHPDGRIFATGNQ 340 (448)
Q Consensus 280 ~v~~~~~sp~~~~l~~~~~------------d~~i~i~d~~~~~~~~~l~~h-~~~v~~~~~~p~g~~l~s~~~ 340 (448)
....|.|.++|.+.+.... ...+..++..+++....+.+. ...++.++|+||++.|+++-+
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 4567999999987763321 125777787788876666543 357899999999998887754
No 367
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=50.91 E-value=54 Score=35.79 Aligned_cols=30 Identities=10% Similarity=0.096 Sum_probs=25.4
Q ss_pred CCCCeeEEEEeCCCcEEEEecCCceEEEEee
Q 013184 246 PSGGIHFMASNNDCGVRDFDMERFQLSKHFS 276 (448)
Q Consensus 246 ~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 276 (448)
++.. ++++-+.|+++|+|++.+++++.+..
T Consensus 247 ~~~~-~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 247 STYN-VLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TTTT-EEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred CCcc-EEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4433 78899999999999999999988765
No 368
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=45.84 E-value=2.6e+02 Score=28.55 Aligned_cols=35 Identities=11% Similarity=0.216 Sum_probs=26.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEc
Q 013184 323 SFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLK 360 (448)
Q Consensus 323 v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 360 (448)
|.++.+ +..++++-+.|.++|+|++++ ++++....
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t-~~lv~t~D 258 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTS-FTLIQDYD 258 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTT-TEEEEEEE
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCC-CceEEeec
Confidence 444444 467999999999999999987 67666554
No 369
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=41.84 E-value=3.1e+02 Score=28.27 Aligned_cols=146 Identities=12% Similarity=0.128 Sum_probs=73.3
Q ss_pred CceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeec-------CCCeeEEEECCC-CCEEEEEecCCc----E
Q 013184 235 AITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSF-------PWPVNHTSLSPD-GKLLVIVGDNPE----G 302 (448)
Q Consensus 235 ~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-------~~~v~~~~~sp~-~~~l~~~~~d~~----i 302 (448)
+.+..+.+ +|.+...++++...+.|...+=........... ...|.++++.|. ...++++..... .
T Consensus 15 g~i~~i~~--~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 15 GYITGIVA--HPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp SCEEEEEE--CSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CcEEEEEE--CCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 34445555 776555777787777776655332223222221 236899999983 345555543211 2
Q ss_pred EEE-ECCCCceeEeeecC-------C--CcEEEEEEcCC-CCEEEEEeCCCcEEEEEccCCCcceEEEcc------CCCC
Q 013184 303 ILV-DSQTGKAIMPLCGH-------L--DFSFASAWHPD-GRIFATGNQDKTCRVWDVRNLSKSVAVLKG------NLGA 365 (448)
Q Consensus 303 ~i~-d~~~~~~~~~l~~h-------~--~~v~~~~~~p~-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~~ 365 (448)
.|| ....|+.-..+... . ..+..++++|. ...++.+...+. ||-....++.-..+.. ....
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCCSTTTC
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccccCCCCC
Confidence 333 33444433332210 0 12456778874 445555553332 4433333333333321 1245
Q ss_pred eEEEEEcCC-CCEEEEEeCC
Q 013184 366 IRSIRFTSD-GNFMAMAEPA 384 (448)
Q Consensus 366 v~~l~~sp~-g~~l~s~~~d 384 (448)
+..+.++|. +..|+++..+
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEEECTTSTTCEEEEESS
T ss_pred eEEEEECCCCCCEEEEEEcC
Confidence 788999884 4455555544
No 370
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=39.97 E-value=3.2e+02 Score=27.86 Aligned_cols=103 Identities=8% Similarity=-0.053 Sum_probs=56.3
Q ss_pred CCeeEEEECCC-CCEEEEEecCCcEEEEECCCCceeEeeecC-------CCcEEEEEEcC-CCCEEEEEeCC-------C
Q 013184 279 WPVNHTSLSPD-GKLLVIVGDNPEGILVDSQTGKAIMPLCGH-------LDFSFASAWHP-DGRIFATGNQD-------K 342 (448)
Q Consensus 279 ~~v~~~~~sp~-~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h-------~~~v~~~~~~p-~g~~l~s~~~d-------~ 342 (448)
+.|..++++|. ...++++...+.|...+ ..|+.-..+..+ ...+.+++++| +...++.+... +
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 37999999995 45666777666666654 334433333222 23588999998 33333333321 1
Q ss_pred cEEEEEccCCCcceEEEcc-C--------CCCeEEEEEcCCC-CEEEEEe
Q 013184 343 TCRVWDVRNLSKSVAVLKG-N--------LGAIRSIRFTSDG-NFMAMAE 382 (448)
Q Consensus 343 ~i~iwd~~~~~~~~~~~~~-~--------~~~v~~l~~sp~g-~~l~s~~ 382 (448)
...||-....++.-..+.. . ...+..|+++|.. ..|.++.
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 2456655443443332221 1 0124678998853 5565655
No 371
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=39.94 E-value=1.9e+02 Score=25.35 Aligned_cols=185 Identities=9% Similarity=-0.015 Sum_probs=103.0
Q ss_pred cCCEEEEEeCCCeEEEEE---cCCCCceeEEEeecCCCCceeeEEEEeCCC-CCeeEEEEeCCCcEEEEecCCce-----
Q 013184 200 RDNLLIAGGFQGELICKY---LDQPGVSFCSRTTYDENAITNAVEIYNSPS-GGIHFMASNNDCGVRDFDMERFQ----- 270 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~dg~v~iwd~~~~~----- 270 (448)
....|+.-+..|.++--. +...... . + ...+..+..+ .. ++ ....++.++.+|.++...+....
T Consensus 34 t~~~ll~fT~~G~v~~~~~~~lp~~~~~--~-l-l~~~e~i~~v--~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G 106 (276)
T 3no0_A 34 FTEGLFLVSNRGRVYWIAGSQALQGSKV--S-L-KSREEKIVGA--FI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQG 106 (276)
T ss_dssp TTSCEEEEETTSEEEEECSHHHHTSEEC--C-C-SSTTCCEEEE--EE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTT
T ss_pred CCCEEEEEcCCCeEEEEEhhhCccCccc--c-c-CCCCCEEEEE--EC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCC
Confidence 556677777888665432 2211111 0 2 2222222222 22 21 23478899999999999876532
Q ss_pred -EEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCC---------CceeEeeecCCCcEEEEEEcCCCCEEEEEeC
Q 013184 271 -LSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQT---------GKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340 (448)
Q Consensus 271 -~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~---------~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~ 340 (448)
..-.+.....+..+........++..+..|.+..+.... |.....+.. .+.|.++...+++..++..+.
T Consensus 107 ~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~ 185 (276)
T 3no0_A 107 MPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITA 185 (276)
T ss_dssp EECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEET
T ss_pred eEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeC
Confidence 222233345566666665667888899999888876421 222222332 355666655556678889999
Q ss_pred CCcEEEEEccCC------CcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEE--EECC
Q 013184 341 DKTCRVWDVRNL------SKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHV--YDAK 393 (448)
Q Consensus 341 d~~i~iwd~~~~------~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~v--wd~~ 393 (448)
.|.++...+... ++-+..+ ...+.+-.+........++..+..|.+.. ++..
T Consensus 186 ~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 186 KGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp TSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred CCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 999998886431 1222333 22344444433333345666677777666 7653
No 372
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=38.30 E-value=2.3e+02 Score=25.67 Aligned_cols=192 Identities=13% Similarity=0.113 Sum_probs=106.2
Q ss_pred cCCEEEEEeCCCeEEEEEc---CCC-----CceeEEEee-cCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 200 RDNLLIAGGFQGELICKYL---DQP-----GVSFCSRTT-YDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~---~~~-----~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
....|+.-+..|.+.-... ... +......+. .....++..+.+-..+. ...++.++..|.++...+...+
T Consensus 52 t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~-e~~~v~~T~~G~iKr~~l~~~~ 130 (327)
T 3uc1_A 52 THDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTD-APYLVLATRNGLVKKSKLTDFD 130 (327)
T ss_dssp TTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTS-SSEEEEEETTSEEEEEEGGGGC
T ss_pred CCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCC-CCEEEEEcCCCEEEEeEHHHhh
Confidence 6667777778887654432 211 110000011 12233333333311112 3489999999999998876533
Q ss_pred E-------EEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECC--C----Cc-----eeEeeecCCCcEEEEEEcCCC
Q 013184 271 L-------SKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQ--T----GK-----AIMPLCGHLDFSFASAWHPDG 332 (448)
Q Consensus 271 ~-------~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~--~----~~-----~~~~l~~h~~~v~~~~~~p~g 332 (448)
. .-.+.....+..+........++..+..|.+..+... . ++ ....|. ..+.|.++...+.+
T Consensus 131 ~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~ 209 (327)
T 3uc1_A 131 SNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREG 209 (327)
T ss_dssp CCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTT
T ss_pred ccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCC
Confidence 2 1122334455555555556778888999988888765 2 11 111222 34567777666667
Q ss_pred CEEEEEeCCCcEEEEEccCC------CcceEEEc--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 013184 333 RIFATGNQDKTCRVWDVRNL------SKSVAVLK--GNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAK 393 (448)
Q Consensus 333 ~~l~s~~~d~~i~iwd~~~~------~~~~~~~~--~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~ 393 (448)
.+++..+..|.++.-.+... ++-+..+. ...+.+-.+........++..+..|.+.-++..
T Consensus 210 ~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 210 TYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 78999999999988876421 12222222 212344444444444566666777777667653
No 373
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=33.97 E-value=3.9e+02 Score=27.17 Aligned_cols=185 Identities=8% Similarity=0.028 Sum_probs=93.5
Q ss_pred CCCCCeeEEEEeCC----CcEEEEecCCceEEEE-eecCC---------CeeEEEECCCCCEEEEEe-----------cC
Q 013184 245 SPSGGIHFMASNND----CGVRDFDMERFQLSKH-FSFPW---------PVNHTSLSPDGKLLVIVG-----------DN 299 (448)
Q Consensus 245 ~~~~~~~l~s~s~d----g~v~iwd~~~~~~~~~-~~~~~---------~v~~~~~sp~~~~l~~~~-----------~d 299 (448)
+|++.+.+++-|.. ..++++|+++++.+.- +. +. ....++|. +...++.+. ..
T Consensus 138 ~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 138 FQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp SSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTTSSB
T ss_pred CCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcCCCC
Confidence 56666555554443 4599999999987631 22 11 01334676 344444432 12
Q ss_pred CcEEEEECCCCc--eeEeeecCCCc-EEEEEEcCCCC-----EEEEEeCC---CcEEEEEccCCCcceEEEccCCCCeEE
Q 013184 300 PEGILVDSQTGK--AIMPLCGHLDF-SFASAWHPDGR-----IFATGNQD---KTCRVWDVRNLSKSVAVLKGNLGAIRS 368 (448)
Q Consensus 300 ~~i~i~d~~~~~--~~~~l~~h~~~-v~~~~~~p~g~-----~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~ 368 (448)
..|+.|.+.+.. -...+.+.... ......+++++ .+++.+.+ ..+.+.+.......+..+...... .
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~ 293 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA--T 293 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC--E
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc--e
Confidence 468888776653 22334433222 33455666766 24444322 345555654322333334322221 2
Q ss_pred EEEcCCCCEEEEE----------eCCCeEEEEECCCCc-------eeeeeec--CcCceEEEEEccCCCeEEEEEecCCc
Q 013184 369 IRFTSDGNFMAMA----------EPADFVHVYDAKNGF-------EKEQEID--FFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 369 l~~sp~g~~l~s~----------~~d~~v~vwd~~~~~-------~~~~~~~--~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
+..++++.+++.. ...+.|.+.++.++. ....+.. ....+.++.|..+ ..+++...++ .
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~-~ 371 (711)
T 4hvt_A 294 LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNV-V 371 (711)
T ss_dssp EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETT-E
T ss_pred EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECC-E
Confidence 2344566555532 256789999987642 1222232 2345788888865 3444444443 3
Q ss_pred ceEEEE
Q 013184 430 GSLLQY 435 (448)
Q Consensus 430 ~~ll~~ 435 (448)
..+..+
T Consensus 372 ~~l~~~ 377 (711)
T 4hvt_A 372 AKVVTF 377 (711)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 344433
No 374
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=28.52 E-value=3.3e+02 Score=24.57 Aligned_cols=154 Identities=9% Similarity=0.048 Sum_probs=84.5
Q ss_pred eeeEEEEe-----cCCEEEEEeCCCeEEEEEcCCCCc-----eeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcE
Q 013184 192 TQVSTLAV-----RDNLLIAGGFQGELICKYLDQPGV-----SFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGV 261 (448)
Q Consensus 192 ~~i~~l~~-----~~~~lvsg~~dg~i~vw~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v 261 (448)
..|.++.. +..+++..+..|.++--.+..-.. .....+ ......+.+. . ..... .++..++.|.+
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~l-ke~D~lv~~~-~--~~~~d-~ill~T~~G~~ 169 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNL-RDNDELVGAV-L--CSAGD-DLLLVSANGQS 169 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBC-CTTCCEEEEE-E--ECTTC-EEEEEETTSEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEE-CCCCEEEEEE-E--ecCCC-EEEEEECCCeE
Confidence 34555544 367999999999999887654221 111111 1222333222 2 22223 57777788988
Q ss_pred EEEecC--C---------ceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCC-------ceeEee--ecCCC
Q 013184 262 RDFDME--R---------FQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTG-------KAIMPL--CGHLD 321 (448)
Q Consensus 262 ~iwd~~--~---------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~-------~~~~~l--~~h~~ 321 (448)
..+... . |...-.+.....|.++...+.+..+++++..|.++...+..- +-+..+ ..-.+
T Consensus 170 ~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d 249 (327)
T 3uc1_A 170 IRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRG 249 (327)
T ss_dssp EEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTC
T ss_pred EEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCC
Confidence 888765 2 211112334556777766666778999999999888764321 222222 22133
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 013184 322 FSFASAWHPDGRIFATGNQDKTCRVWDVR 350 (448)
Q Consensus 322 ~v~~~~~~p~g~~l~s~~~d~~i~iwd~~ 350 (448)
.+..+........++..+..|.+.-+...
T Consensus 250 ~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 250 RLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp SEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred eEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 44444333334455556666666666553
No 375
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=22.47 E-value=3.9e+02 Score=23.32 Aligned_cols=152 Identities=8% Similarity=-0.030 Sum_probs=82.7
Q ss_pred eeEEEEe---cCCEEEEEeCCCeEEEEEcCCCC----ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEe
Q 013184 193 QVSTLAV---RDNLLIAGGFQGELICKYLDQPG----VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFD 265 (448)
Q Consensus 193 ~i~~l~~---~~~~lvsg~~dg~i~vw~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd 265 (448)
.|.++-. +..+++..+.+|.++...+..-. ......+ ......+ .+.. ... ...++..++.|.+..+.
T Consensus 69 ~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~l-kegD~l~-~~~~--~~~-~~~ill~T~~G~~~r~~ 143 (276)
T 3no0_A 69 KIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKL-TEGDEVV-SIAS--SVD-ETHILLFTKKGRVARFS 143 (276)
T ss_dssp CEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCC-CTTCCEE-EEEE--CCS-SCEEEEEETTSEEEEEE
T ss_pred EEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEec-CCCCEEE-EEEE--eCC-CCEEEEEECCCEEEEEE
Confidence 4555433 45789999999999988875431 1101111 1222222 2222 223 33677788889988886
Q ss_pred cCC---------ceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCC-------CceeEeeecCCCcEEEEEEc
Q 013184 266 MER---------FQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQT-------GKAIMPLCGHLDFSFASAWH 329 (448)
Q Consensus 266 ~~~---------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~-------~~~~~~l~~h~~~v~~~~~~ 329 (448)
... |...-.+.....|..+...+++..+++++..|.++...+.. ++-+..+ ...+.+..+...
T Consensus 144 ~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~ 222 (276)
T 3no0_A 144 VREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPI 222 (276)
T ss_dssp GGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEE
T ss_pred hhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEe
Confidence 532 21211233345566655555567888899999988877532 2223333 223444444332
Q ss_pred CCCCEEEEEeCCCcEEE--EEcc
Q 013184 330 PDGRIFATGNQDKTCRV--WDVR 350 (448)
Q Consensus 330 p~g~~l~s~~~d~~i~i--wd~~ 350 (448)
.....++..+..|.+.. ++..
T Consensus 223 ~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 223 KEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp SSEEEEEEEETTSCEEEEEEEGG
T ss_pred CCCCEEEEEcCCCeEEEeeeCHH
Confidence 23345556666676666 6654
No 376
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=22.02 E-value=4.2e+02 Score=23.56 Aligned_cols=189 Identities=10% Similarity=0.051 Sum_probs=104.0
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCce-----eEEEee-cCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC---ce
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVS-----FCSRTT-YDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER---FQ 270 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~-----~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~---~~ 270 (448)
+..++++.+.+|.|+--.+..-... -...+. ....... .+... .. ...++..++.|.++-+.... ..
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~-~~~~~--~~-~~~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIV-IALCV--NT-HDYLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEE-EEEEE--ET-TCEEEEEETTSEEEEEEGGGSCC--
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEE-EEEEE--CC-CCEEEEEECCCeEEEEEHHHCCCCC
Confidence 5667889999999987766432110 000111 1222222 22221 22 22567777788877765432 11
Q ss_pred EE---------EEeecCCCeeEEEECC---CCCEEEEEecCCcEEEEECC-------CCceeEeeecCCCcEEEEEEcCC
Q 013184 271 LS---------KHFSFPWPVNHTSLSP---DGKLLVIVGDNPEGILVDSQ-------TGKAIMPLCGHLDFSFASAWHPD 331 (448)
Q Consensus 271 ~~---------~~~~~~~~v~~~~~sp---~~~~l~~~~~d~~i~i~d~~-------~~~~~~~l~~h~~~v~~~~~~p~ 331 (448)
.. -.+.....|.++..-+ +...++.++..|.++...+. .|.....+.. .+.+..+.....
T Consensus 83 r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~ 161 (312)
T 1suu_A 83 RASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFK 161 (312)
T ss_dssp -----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECT
T ss_pred ccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCC
Confidence 00 0122233454443332 46778889999999888763 2333333443 455655555555
Q ss_pred CCEEEEEeCCCcEEEEEccCC---C---cceEEEcc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 013184 332 GRIFATGNQDKTCRVWDVRNL---S---KSVAVLKG-NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAK 393 (448)
Q Consensus 332 g~~l~s~~~d~~i~iwd~~~~---~---~~~~~~~~-~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~ 393 (448)
...++..+..|.+..+..... + .-+..+.- ....|..+..-+++..|++.+..|..+...+.
T Consensus 162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 567888899999888877431 1 11222221 13345555555556778888899998888874
Done!