BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013185
         (448 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
           Neisseria Meningitidis
          Length = 867

 Score = 30.0 bits (66), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 26  DRKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPAKLTG 78
           DR  P +A+ +V+A        LC+ LEP  + +V + ++R  A+ G +K  G
Sbjct: 813 DRFNPQVAARLVQAFN------LCNKLEPHRKNLVKQALQRIRAQEGLSKDVG 859


>pdb|3JSK|A Chain A, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|B Chain B, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|C Chain C, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|D Chain D, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|E Chain E, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|F Chain F, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|G Chain G, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|H Chain H, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|I Chain I, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|J Chain J, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|K Chain K, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|L Chain L, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|M Chain M, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|N Chain N, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|O Chain O, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|P Chain P, Thiazole Synthase From Neurospora Crassa
          Length = 344

 Score = 28.9 bits (63), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 1   MQTRYMERSNSKRGLDSSSAEEGQPDRKRPALASVIVEALKVDSL 45
           +  + MER N  RGLD  SAE+   +  R  +  +IV  +++  +
Sbjct: 262 VSMKQMERLNGMRGLDMQSAEDAIVNNTREIVPGLIVGGMELSEI 306


>pdb|1Z82|A Chain A, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
           (Tm0378) From Thermotoga Maritima At 2.00 A Resolution
 pdb|1Z82|B Chain B, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
           (Tm0378) From Thermotoga Maritima At 2.00 A Resolution
          Length = 335

 Score = 28.9 bits (63), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 7/80 (8%)

Query: 190 GVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTD----AFTVKDHRGELY 245
           G+  +GDL  T NS + R+R+F  G  +A G+   +++ E+       AFTVK       
Sbjct: 238 GLAGIGDLXVTCNSRYSRNRRF--GELIARGF-NPLKLLESSNQVVEGAFTVKAVXKIAK 294

Query: 246 KKHYPPALNDEVWRLEKIGK 265
           +      +++EV+R+   GK
Sbjct: 295 ENKIDXPISEEVYRVVYEGK 314


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.135    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,401,730
Number of Sequences: 62578
Number of extensions: 638164
Number of successful extensions: 1401
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1399
Number of HSP's gapped (non-prelim): 8
length of query: 448
length of database: 14,973,337
effective HSP length: 102
effective length of query: 346
effective length of database: 8,590,381
effective search space: 2972271826
effective search space used: 2972271826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)