Query 013185
Match_columns 448
No_of_seqs 130 out of 158
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 05:47:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wcn_A Transcription elongatio 92.5 0.03 1E-06 44.3 0.7 62 253-321 5-67 (70)
2 2kz3_A Putative uncharacterize 91.1 0.14 4.8E-06 42.0 3.3 41 269-314 16-56 (83)
3 2i1q_A DNA repair and recombin 79.0 0.47 1.6E-05 45.3 0.5 59 255-320 3-61 (322)
4 3lda_A DNA repair protein RAD5 78.4 1.1 3.7E-05 45.5 3.0 62 255-321 81-142 (400)
5 3mab_A Uncharacterized protein 77.6 0.32 1.1E-05 40.6 -0.9 74 259-371 8-81 (93)
6 2z43_A DNA repair and recombin 75.3 0.61 2.1E-05 45.0 0.2 57 256-319 13-69 (324)
7 1b22_A DNA repair protein RAD5 72.5 0.7 2.4E-05 39.8 -0.2 62 256-322 24-85 (114)
8 1v5w_A DMC1, meiotic recombina 70.8 0.94 3.2E-05 44.3 0.3 59 256-319 26-84 (343)
9 1pzn_A RAD51, DNA repair and r 68.4 3.3 0.00011 40.7 3.6 59 256-321 36-94 (349)
10 3bqs_A Uncharacterized protein 63.3 1.1 3.8E-05 37.3 -0.8 75 258-371 7-81 (93)
11 4dez_A POL IV 1, DNA polymeras 54.5 2.4 8.2E-05 41.7 -0.3 40 257-301 180-219 (356)
12 3pzp_A DNA polymerase kappa; D 50.1 7.8 0.00027 40.7 2.7 52 256-317 339-390 (517)
13 3im1_A Protein SNU246, PRE-mRN 47.7 9.5 0.00033 37.1 2.8 55 256-317 158-212 (328)
14 3osn_A DNA polymerase IOTA; ho 46.6 3.8 0.00013 41.7 -0.3 49 260-317 239-287 (420)
15 2aq4_A DNA repair protein REV1 44.2 7.6 0.00026 39.5 1.5 52 257-316 243-296 (434)
16 1jx4_A DNA polymerase IV (fami 41.9 5.5 0.00019 39.0 0.1 54 257-319 180-233 (352)
17 1t94_A Polymerase (DNA directe 41.8 12 0.00041 38.3 2.5 51 256-316 283-333 (459)
18 2q0z_X Protein Pro2281; SEC63, 39.9 22 0.00076 34.7 4.0 55 256-317 162-216 (339)
19 3bq0_A POL IV, DBH, DNA polyme 37.8 7 0.00024 38.3 0.1 54 257-319 181-234 (354)
20 1z3e_B DNA-directed RNA polyme 34.9 18 0.00062 28.7 2.0 25 271-298 22-46 (73)
21 4f4y_A POL IV, DNA polymerase 34.3 5.6 0.00019 39.5 -1.3 49 259-316 183-231 (362)
22 3k4g_A DNA-directed RNA polyme 33.1 24 0.00082 29.0 2.5 38 271-313 25-62 (86)
23 3gqc_A DNA repair protein REV1 32.4 6.8 0.00023 41.2 -1.1 40 257-301 317-356 (504)
24 1u9l_A Transcription elongatio 26.6 28 0.00096 27.3 1.8 50 266-320 15-64 (70)
25 2va8_A SSO2462, SKI2-type heli 23.7 34 0.0012 36.1 2.3 49 258-316 660-708 (715)
26 1tqz_A Necap1; endocytosis, st 22.8 29 0.00099 30.9 1.3 34 101-134 38-71 (133)
27 3gfk_B DNA-directed RNA polyme 22.1 20 0.00069 29.0 0.2 25 271-298 29-53 (79)
28 3euh_C MUKE, chromosome partit 21.1 96 0.0033 29.9 4.6 74 271-344 107-186 (234)
No 1
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=92.48 E-value=0.03 Score=44.32 Aligned_cols=62 Identities=24% Similarity=0.424 Sum_probs=51.1
Q ss_pred CCccceeeeeecccchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHHhhcc-cccC
Q 013185 253 LNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKT-CVLS 321 (448)
Q Consensus 253 L~DeVwRLekIgKdG~~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~HAkt-Cvl~ 321 (448)
..|++-.|++|+..-. ++|.++||+||+|+..+ +++.|-.|. |+|...=+.++.-|+. |-+.
T Consensus 5 ~~~~l~~L~Gi~~~~~--~kL~e~Gi~TvedlA~~---~~~eL~~i~--gise~kA~~ii~aAr~~~w~~ 67 (70)
T 1wcn_A 5 PADDLLNLEGVDRDLA--FKLAARGVCTLEDLAEQ---GIDDLADIE--GLTDEKAGALIMAARNICWFG 67 (70)
T ss_dssp CCHHHHSSTTCCHHHH--HHHHTTTCCSHHHHHTS---CHHHHHTSS--SCCHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHcCCCCHHHH--HHHHHcCCCcHHHHHcC---CHHHHHHcc--CCCHHHHHHHHHHHHHccCcc
Confidence 4567778887776544 89999999999997655 888898887 8999999999999998 7553
No 2
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=91.11 E-value=0.14 Score=41.97 Aligned_cols=41 Identities=24% Similarity=0.205 Sum_probs=31.1
Q ss_pred hhhhhhhcCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHHh
Q 013185 269 FHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDH 314 (448)
Q Consensus 269 ~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~H 314 (448)
.-++|.+++|.||+||+.+ |+.+|.+++ |+|-+.=-.+..|
T Consensus 16 ~~~~L~~~~I~Tv~Dfl~~---d~~eL~~~~--~ls~~~v~~l~r~ 56 (83)
T 2kz3_A 16 MIQLLRSHRIKTVVDLVSA---DLEEVAQKC--GLSYKALVALRRV 56 (83)
T ss_dssp HHHHHHHTTCCCHHHHTTS---CHHHHHHHH--TCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHhC---CHHHHHHHh--CCCHHHHHHHHHH
Confidence 3478999999999999865 999999999 5665544444433
No 3
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=78.97 E-value=0.47 Score=45.31 Aligned_cols=59 Identities=22% Similarity=0.246 Sum_probs=43.4
Q ss_pred ccceeeeeecccchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHHhhccccc
Q 013185 255 DEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVL 320 (448)
Q Consensus 255 DeVwRLekIgKdG~~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl 320 (448)
+++..|++|+. ..-++|.++||+||+||+.+ ++..|-++. |+|.+.=+.+++.|+.+..
T Consensus 3 ~~~~~l~gi~~--~~~~kL~~~gi~t~~~~~~~---~~~~L~~~~--gis~~~a~~~i~~a~~~~~ 61 (322)
T 2i1q_A 3 DNLTDLPGVGP--STAEKLVEAGYIDFMKIATA---TVGELTDIE--GISEKAAAKMIMGARDLCD 61 (322)
T ss_dssp --CTTSTTCCH--HHHHHHHHHTCCSHHHHHTC---CHHHHHTST--TCCHHHHHHHHHHHHHHTT
T ss_pred ccHhhcCCCCH--HHHHHHHHcCCCcHHHHHhC---CHHHHHHhh--CcCHHHHHHHHHHHHHhhh
Confidence 45667775554 46699999999999999855 677777775 6788777778888877643
No 4
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=78.37 E-value=1.1 Score=45.49 Aligned_cols=62 Identities=24% Similarity=0.225 Sum_probs=50.5
Q ss_pred ccceeeeeecccchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHHhhcccccC
Q 013185 255 DEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLS 321 (448)
Q Consensus 255 DeVwRLekIgKdG~~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~ 321 (448)
.++-+|+..|-.-..-++|.++||+||++|+.. ++..|.++. |+|...=+.+++.|++++..
T Consensus 81 ~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~~---~~~~L~~~~--gis~~~~~~i~~~a~~~~~~ 142 (400)
T 3lda_A 81 VPIEKLQVNGITMADVKKLRESGLHTAEAVAYA---PRKDLLEIK--GISEAKADKLLNEAARLVPM 142 (400)
T ss_dssp CBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHHS---CHHHHHTST--TCCHHHHHHHHHHHHHHSCC
T ss_pred cCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHHh--CCCHHHHHHHHHHHHHhccc
Confidence 467788886665566799999999999999864 888999987 78888888888888876643
No 5
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=77.65 E-value=0.32 Score=40.61 Aligned_cols=74 Identities=23% Similarity=0.348 Sum_probs=50.3
Q ss_pred eeeeecccchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHHhhcccccCCceEEEecCCCCcEEEE
Q 013185 259 RLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLSGKLYVYYPDDPRNVGVV 338 (448)
Q Consensus 259 RLekIgKdG~~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~~k~y~y~~~~~~nv~l~ 338 (448)
.|-+||+.- -+.|.+.||.||+||..+ ++ .+.|..+.++- .+ +-
T Consensus 8 dLPNig~~~--e~~L~~~GI~t~~~Lr~~---Ga------------~~ay~rLk~~~-----------------~~--~~ 51 (93)
T 3mab_A 8 ELPNIGKVL--EQDLIKAGIKTPVELKDV---GS------------KEAFLRIWEND-----------------SS--VC 51 (93)
T ss_dssp GSTTCCHHH--HHHHHHTTCCSHHHHHHH---CH------------HHHHHHHHHHC-----------------TT--CC
T ss_pred hCCCCCHHH--HHHHHHcCCCCHHHHHhC---CH------------HHHHHHHHHhC-----------------CC--CC
Confidence 445556643 378999999999999877 32 33344433220 11 22
Q ss_pred EccccceeeeeeCCeeecCCCCChHhHHHHHHH
Q 013185 339 FNNIYEFCGLIADGQYHSADSLSESQKVHVDTL 371 (448)
Q Consensus 339 FN~i~~lvG~~~~g~y~~~d~L~~~qk~~V~~L 371 (448)
+|..|.|+||+-| +....|++..|....++
T Consensus 52 ~~~L~aL~gAi~G---~~w~~l~~~~K~~L~~~ 81 (93)
T 3mab_A 52 MSELYALEGAVQG---IRWHGLDEAKKIELKKF 81 (93)
T ss_dssp HHHHHHHHHHHHT---SCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CcHHHCCHHHHHHHHHH
Confidence 7888999999987 67788999999776554
No 6
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=75.33 E-value=0.61 Score=45.04 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=0.0
Q ss_pred cceeeeeecccchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHHhhcccc
Q 013185 256 EVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCV 319 (448)
Q Consensus 256 eVwRLekIgKdG~~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 319 (448)
++.+|.+|+.. .-++|.++||+||++|+.. ++..|-++. |+|...=+.+++.|..+.
T Consensus 13 ~~~~l~g~~~~--~~~~l~~~g~~t~~~~~~~---~~~~l~~~~--g~s~~~~~~~~~~~~~~~ 69 (324)
T 2z43_A 13 TINDLPGISQT--VINKLIEAGYSSLETLAVA---SPQDLSVAA--GIPLSTAQKIIKEARDAL 69 (324)
T ss_dssp ----------------------------------------------------------------
T ss_pred cHHHcCCCCHH--HHHHHHHcCCCcHHHHHcC---CHHHHHHhh--CCCHHHHHHHHHHHHhhc
Confidence 67888866654 4589999999999999865 455666665 566666666777776653
No 7
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=72.48 E-value=0.7 Score=39.76 Aligned_cols=62 Identities=32% Similarity=0.395 Sum_probs=50.6
Q ss_pred cceeeeeecccchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHHhhcccccCC
Q 013185 256 EVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLSG 322 (448)
Q Consensus 256 eVwRLekIgKdG~~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~~ 322 (448)
+|.+|+..|-.-+.-++|.++|++||++. ...++..|.+|- |+|...=+.+++=|+.++..+
T Consensus 24 ~I~~L~~~GIg~~~i~kL~eAG~~Tve~v---a~a~~~eL~~i~--GIse~ka~kIi~aA~kl~~~g 85 (114)
T 1b22_A 24 PISRLEQCGINANDVKKLEEAGFHTVEAV---AYAPKKELINIK--GISEAKADKILAEAAKLVPMG 85 (114)
T ss_dssp CHHHHHHTTCSHHHHHHHHTTCCSSGGGB---TSSBHHHHHTTT--TCSTTHHHHHHHHHHHHSCCC
T ss_pred cHHHHHhcCCCHHHHHHHHHcCcCcHHHH---HhCCHHHHHHcc--CCCHHHHHHHHHHHHHHcccC
Confidence 68889965544567799999999999976 455888999986 789999999999999887544
No 8
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=70.78 E-value=0.94 Score=44.30 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=0.0
Q ss_pred cceeeeeecccchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHHhhcccc
Q 013185 256 EVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCV 319 (448)
Q Consensus 256 eVwRLekIgKdG~~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 319 (448)
++++|+.-|-.=..-++|.++||+||++|+.. ++..|.++. |+|...=+.+++.|..+.
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~---~~~~l~~~~--~is~~~~~~~~~~a~~~~ 84 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMT---TRRALCNVK--GLSEAKVDKIKEAANKLI 84 (343)
T ss_dssp ----------------------------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhh--CCCHHHHHHHHHHHHhhc
Confidence 68899955554556689999999999999865 556666665 556655556666665543
No 9
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=68.40 E-value=3.3 Score=40.74 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=45.3
Q ss_pred cceeeeeecccchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHHhhcccccC
Q 013185 256 EVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLS 321 (448)
Q Consensus 256 eVwRLekIgKdG~~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~ 321 (448)
++.+|.+|+ -...++|.++||+||++++.+ ++..|-++. |+|...=+.+++.|.++...
T Consensus 36 ~l~~l~Gi~--~~~~~kL~~ag~~t~~~~~~~---~~~~L~~~~--~~s~~~~~~~l~~~~~~~~~ 94 (349)
T 1pzn_A 36 SIEDLPGVG--PATAEKLREAGYDTLEAIAVA---SPIELKEVA--GISEGTALKIIQAARKAANL 94 (349)
T ss_dssp CSSCCTTCC--HHHHHHHHTTTCCSHHHHHTC---CHHHHHHHH--CCCHHHHHHHHHHHHHHCST
T ss_pred cHHHcCCCC--HHHHHHHHHcCCCcHHHHHhC---CHHHHHhhc--CCCHHHHHHHHHHHhhhccc
Confidence 466666444 467799999999999998755 788888887 67877778888888776543
No 10
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=63.26 E-value=1.1 Score=37.27 Aligned_cols=75 Identities=23% Similarity=0.358 Sum_probs=49.0
Q ss_pred eeeeeecccchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHHhhcccccCCceEEEecCCCCcEEE
Q 013185 258 WRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLSGKLYVYYPDDPRNVGV 337 (448)
Q Consensus 258 wRLekIgKdG~~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~~k~y~y~~~~~~nv~l 337 (448)
-.|-.||+. .-+.|.+.||+||+||..+ ++. ++|..+.+. ... +
T Consensus 7 ~~LPNiG~~--~e~~L~~vGI~s~e~L~~~---Ga~------------~ay~rL~~~-----------------~~~--~ 50 (93)
T 3bqs_A 7 SELPNIGKV--LEQDLIKAGIKTPVELKDV---GSK------------EAFLRIWEN-----------------DSS--V 50 (93)
T ss_dssp GGSTTCCHH--HHHHHHHTTCCSHHHHHHH---HHH------------HHHHHHHTT-----------------CTT--C
T ss_pred hcCCCCCHH--HHHHHHHcCCCCHHHHHhC---CHH------------HHHHHHHHH-----------------CCC--C
Confidence 344455654 4478999999999999876 332 233333221 012 2
Q ss_pred EEccccceeeeeeCCeeecCCCCChHhHHHHHHH
Q 013185 338 VFNNIYEFCGLIADGQYHSADSLSESQKVHVDTL 371 (448)
Q Consensus 338 ~FN~i~~lvG~~~~g~y~~~d~L~~~qk~~V~~L 371 (448)
.++.+|.|.||+-| ++...|++..|....+.
T Consensus 51 c~~~L~aL~gAi~G---~~w~~l~~~~K~~L~~~ 81 (93)
T 3bqs_A 51 CMSELYALEGAVQG---IRWHGLDEAKKIELKKF 81 (93)
T ss_dssp CHHHHHHHHHHHHT---SCGGGSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcC---CCHHHCCHHHHHHHHHH
Confidence 23778889999877 77788999888776543
No 11
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=54.54 E-value=2.4 Score=41.70 Aligned_cols=40 Identities=30% Similarity=0.344 Sum_probs=31.0
Q ss_pred ceeeeeecccchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcC
Q 013185 257 VWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGS 301 (448)
Q Consensus 257 VwRLekIgKdG~~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~ 301 (448)
|-.|-+||+.- -++|...||+|++|+.+ .++..|++.||.
T Consensus 180 v~~l~GiG~~~--~~~L~~~GI~Ti~dL~~---~~~~~L~~~fG~ 219 (356)
T 4dez_A 180 PDALWGVGPKT--TKKLAAMGITTVADLAV---TDPSVLTTAFGP 219 (356)
T ss_dssp GGGSTTCCHHH--HHHHHHTTCCSHHHHHT---SCHHHHHHHHCH
T ss_pred HHHHcCCchhH--HHHHHHcCCCeeccccc---CCHHHHHHHhCC
Confidence 33444677643 48899999999999864 589999999974
No 12
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=50.13 E-value=7.8 Score=40.66 Aligned_cols=52 Identities=19% Similarity=0.350 Sum_probs=38.6
Q ss_pred cceeeeeecccchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHHhhcc
Q 013185 256 EVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKT 317 (448)
Q Consensus 256 eVwRLekIgKdG~~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 317 (448)
+|-+|-+||+.+. ++|...||.|++|+..+ +..|+..|| ...|..+.++|.-
T Consensus 339 PV~kl~GIG~~t~--~~L~~lGI~TigDL~~~----~~~L~~~fG----~~~~~~l~~~a~G 390 (517)
T 3pzp_A 339 PIRKVSGIGKVTE--KMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISLG 390 (517)
T ss_dssp BGGGSTTCCHHHH--HHHHHTTCCBHHHHHHH----HHHHHHHSC----HHHHHHHHHHHTT
T ss_pred ChhhhccccHHHH--HHHHHhCCCcHHHHHhh----HHHHHHHhC----hHHHHHHHHHHcC
Confidence 3555567776554 89999999999999886 457888775 3568877777653
No 13
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=47.72 E-value=9.5 Score=37.10 Aligned_cols=55 Identities=11% Similarity=0.215 Sum_probs=43.5
Q ss_pred cceeeeeecccchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHHhhcc
Q 013185 256 EVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKT 317 (448)
Q Consensus 256 eVwRLekIgKdG~~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 317 (448)
+..-|.+|+.+-+ ++|.++||.|++||..+ +++++.++| +++++.-+.+.+-|..
T Consensus 158 pL~Qlp~i~~~~~--~~l~~~~i~s~~~l~~~---~~~e~~~ll--~~~~~~~~~v~~~~~~ 212 (328)
T 3im1_A 158 PLRQIPHFNNKIL--EKCKEINVETVYDIMAL---EDEERDEIL--TLTDSQLAQVAAFVNN 212 (328)
T ss_dssp GGGGSTTCCHHHH--HHHHHTTCCSHHHHHHS---CHHHHHHHC--CCCHHHHHHHHHHHHH
T ss_pred ceeCCCCCCHHHH--HHHHhCCCCCHHHHhcC---CHHHHHhHh--CCCHHHHHHHHHHHHh
Confidence 4567788887644 67999999999998654 899999998 6888888887776653
No 14
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=46.55 E-value=3.8 Score=41.71 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=36.3
Q ss_pred eeeecccchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHHhhcc
Q 013185 260 LEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKT 317 (448)
Q Consensus 260 LekIgKdG~~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 317 (448)
|-+||+ ..-++|...||+|++|+.++ ++..|++.||. +....+.+||.-
T Consensus 239 l~GIG~--~t~~~L~~lGI~TigdLa~~---~~~~L~~~fG~----~~g~~L~~~a~G 287 (420)
T 3osn_A 239 IPGIGY--KTAKCLEALGINSVRDLQTF---SPKILEKELGI----SVAQRIQKLSFG 287 (420)
T ss_dssp STTCCH--HHHHHHHHTTCCSHHHHHHS---CHHHHHHHHHH----HHHHHHHHHHTT
T ss_pred ccCCCH--HHHHHHHHhCCCcHHHHhhC---CHHHHHHHhCc----hHHHHHHHHhcC
Confidence 334554 45689999999999998764 88999999974 345666677753
No 15
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=44.22 E-value=7.6 Score=39.45 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=38.2
Q ss_pred ceeeeeecccchhhhhhhh--cCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHHhhc
Q 013185 257 VWRLEKIGKDGSFHKRLNK--AGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAK 316 (448)
Q Consensus 257 VwRLekIgKdG~~hkrL~~--~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~HAk 316 (448)
|-.|-+||+ ..-++|.. .||+|++|+.++. ++..|++.||. +....+..||+
T Consensus 243 v~~l~GiG~--~~~~~L~~~~~GI~ti~dL~~~~--~~~~L~~~fG~----~~g~~l~~~a~ 296 (434)
T 2aq4_A 243 LDDLPGVGH--STLSRLESTFDSPHSLNDLRKRY--TLDALKASVGS----KLGMKIHLALQ 296 (434)
T ss_dssp GGGSTTCCH--HHHHHHHHHTTCCCSHHHHHHHC--CHHHHHHHHCS----SHHHHHHHHTT
T ss_pred cccccCcCH--HHHHHHHHhcCCceEHHHHHhcC--CHHHHHHHhCH----HHHHHHHHHhc
Confidence 444445564 45689999 8999999999874 88999999974 24455556665
No 16
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=41.88 E-value=5.5 Score=39.02 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=39.8
Q ss_pred ceeeeeecccchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHHhhcccc
Q 013185 257 VWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCV 319 (448)
Q Consensus 257 VwRLekIgKdG~~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 319 (448)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.||. .....+.+||+--+
T Consensus 180 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~d 233 (352)
T 1jx4_A 180 IADVPGIGN--ITAEKLKKLGINKLVDTLS---IEFDKLKGMIGE----AKAKYLISLARDEY 233 (352)
T ss_dssp GGGSTTCCH--HHHHHHHTTTCCBGGGGGS---SCHHHHHHHHCH----HHHHHHHHHHTTCC
T ss_pred CCcccccCH--HHHHHHHHcCCchHHHHHC---CCHHHHHHhcCh----hHHHHHHHHhCCCC
Confidence 555556665 4568999999999999875 588999999964 22566677776433
No 17
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=41.81 E-value=12 Score=38.25 Aligned_cols=51 Identities=20% Similarity=0.360 Sum_probs=37.7
Q ss_pred cceeeeeecccchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHHhhc
Q 013185 256 EVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAK 316 (448)
Q Consensus 256 eVwRLekIgKdG~~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~HAk 316 (448)
+|-+|-+||+.+ .++|...||+|++|+..+ +..|++.||. +.|..+..+|+
T Consensus 283 pv~~l~GiG~~~--~~~L~~lGI~T~gdL~~~----~~~L~~~fG~----~~~~~l~~~a~ 333 (459)
T 1t94_A 283 PIRKVSGIGKVT--EKMLKALGIITCTELYQQ----RALLSLLFSE----TSWHYFLHISL 333 (459)
T ss_dssp BGGGCTTSCHHH--HHHHHHTTCCBHHHHHHT----HHHHHHHSCH----HHHHHHHHHHT
T ss_pred CHHhcCCcCHHH--HHHHHHcCCCcHHHHHhh----HHHHHHHhCh----HhHHHHHHHHc
Confidence 366666777654 489999999999998874 3569998853 45666767776
No 18
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=39.86 E-value=22 Score=34.70 Aligned_cols=55 Identities=13% Similarity=0.212 Sum_probs=42.8
Q ss_pred cceeeeeecccchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHHhhcc
Q 013185 256 EVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKT 317 (448)
Q Consensus 256 eVwRLekIgKdG~~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 317 (448)
+..-|.+|+.+ .-++|.++||.|++||.. .+++++..+| |+++..-+.+.+-+..
T Consensus 162 pL~Qlp~i~~~--~~~~l~~~~i~s~~~l~~---~~~~e~~~ll--~l~~~~~~~i~~~~~~ 216 (339)
T 2q0z_X 162 YLKQLPHFTSE--HIKRCTDKGVESVFDIME---MEDEERNALL--QLTDSQIADVARFCNR 216 (339)
T ss_dssp GGGGSTTCCHH--HHHHHHHTTCCSHHHHHH---SCHHHHHHHH--CCCHHHHHHHHHHHTT
T ss_pred ceecCCCCCHH--HHHHHHhcCCCCHHHHHh---CCHHHHHHHH--CCCHHHHHHHHHHHHh
Confidence 56778888775 447899999999999875 6899999999 4888776777665543
No 19
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=37.85 E-value=7 Score=38.32 Aligned_cols=54 Identities=26% Similarity=0.362 Sum_probs=39.5
Q ss_pred ceeeeeecccchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHHhhcccc
Q 013185 257 VWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCV 319 (448)
Q Consensus 257 VwRLekIgKdG~~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 319 (448)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.||. .....+.+||+--+
T Consensus 181 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~d 234 (354)
T 3bq0_A 181 IDEIPGIGS--VLARRLNELGIQKLRDILS---KNYNELEKITGK----AKALYLLKLAQNKY 234 (354)
T ss_dssp STTSTTCCH--HHHHHHTTTTCCBGGGGGG---SCHHHHHHHHCH----HHHHHHHHHHTTCC
T ss_pred cccccCcCH--HHHHHHHHcCCccHHHHhc---CCHHHHHHHHCH----HHHHHHHHHhCCCC
Confidence 444445664 4568999999999999875 588999999974 22666777776443
No 20
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=34.94 E-value=18 Score=28.72 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=19.5
Q ss_pred hhhhhcCCccHHHHHHHHhhChHHHHHH
Q 013185 271 KRLNKAGIFTVEDFLRLVVRDSQRLRNI 298 (448)
Q Consensus 271 krL~~~~I~tV~dFL~l~~~d~~kLR~i 298 (448)
.-|..+||+||+|+++. .++.|.++
T Consensus 22 NcLkragI~Tv~dL~~~---s~~dLlki 46 (73)
T 1z3e_B 22 NCLKRAGINTVQELANK---TEEDMMKV 46 (73)
T ss_dssp HHHHHTTCCBHHHHHTS---CHHHHHTS
T ss_pred HHHHHcCCCcHHHHHcC---CHHHHHHc
Confidence 46889999999998875 56666666
No 21
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=34.33 E-value=5.6 Score=39.53 Aligned_cols=49 Identities=29% Similarity=0.424 Sum_probs=35.5
Q ss_pred eeeeecccchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHHhhc
Q 013185 259 RLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAK 316 (448)
Q Consensus 259 RLekIgKdG~~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~HAk 316 (448)
.|-+||+. .-++|...||+|++|+.+ .++..|++.||. +....+..+|+
T Consensus 183 ~l~GiG~~--~~~~L~~~GI~Ti~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~ 231 (362)
T 4f4y_A 183 EIPGIGSV--LARRLNELGIQKLRDILS---KNYNELEKITGK----AKALYLLKLAQ 231 (362)
T ss_dssp TSTTCCST--THHHHHHTTCCBGGGGTT---SCHHHHHHHHCH----HHHHHHHHHHT
T ss_pred hccCCCHH--HHHHHHHcCCChHHHHhc---CCHHHHHHHhCh----HHHHHHHHHhc
Confidence 33456664 458999999999999765 588999999973 34455555554
No 22
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=33.11 E-value=24 Score=29.04 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=24.7
Q ss_pred hhhhhcCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHH
Q 013185 271 KRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVD 313 (448)
Q Consensus 271 krL~~~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~ 313 (448)
.-|..+||+||+|++.. +++.|.+|= |+-.|.-+.+.+
T Consensus 25 NcLkragI~Tv~dL~~~---se~dLlki~--n~G~KSl~EI~~ 62 (86)
T 3k4g_A 25 NCLXAEAIHYIGDLVQR---TEVELLXTP--NLGXXSLTEIXD 62 (86)
T ss_dssp HHHHHTTCCBHHHHHHS---CHHHHHTST--TCCHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHhC---CHHHHhhcc--ccCcccHHHHHH
Confidence 46889999999998876 555555552 344444444443
No 23
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=32.44 E-value=6.8 Score=41.16 Aligned_cols=40 Identities=28% Similarity=0.391 Sum_probs=31.1
Q ss_pred ceeeeeecccchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcC
Q 013185 257 VWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGS 301 (448)
Q Consensus 257 VwRLekIgKdG~~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~ 301 (448)
|-.|-+||+ ..-++|...||+|++|+.+ .++..|++.||.
T Consensus 317 V~~l~GIG~--~t~~kL~~lGI~TigDLa~---~~~~~L~~~fG~ 356 (504)
T 3gqc_A 317 VTNLPGVGH--SMESKLASLGIKTCGDLQY---MTMAKLQKEFGP 356 (504)
T ss_dssp GGGSTTCCH--HHHHHHHHTTCCBHHHHTT---SCHHHHHHHHCH
T ss_pred hhHhhCcCH--HHHHHHHHcCCCcHHHHHh---ccHHHHHHhhCh
Confidence 444445665 4458999999999999864 588999999975
No 24
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=26.62 E-value=28 Score=27.31 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=40.3
Q ss_pred cchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHHhhccccc
Q 013185 266 DGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVL 320 (448)
Q Consensus 266 dG~~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl 320 (448)
+-..-++|..+|++||++. .+.+++.|-.|- |+|...=+.+.+-|+.++.
T Consensus 15 ~e~~a~~L~~~Gf~tve~v---A~~~~~eL~~I~--G~dE~~a~~l~~~A~~~l~ 64 (70)
T 1u9l_A 15 DEDFATVLVEEGFSTLEEL---AYVPMKELLEIE--GLDEPTVEALRERAKNALA 64 (70)
T ss_dssp CHHHHHHHHHTTCCCHHHH---HHSCHHHHTTST--TCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCcCcHHHH---HcCCHHHHhhcc--CCCHHHHHHHHHHHHHHHH
Confidence 4456689999999999964 456778787775 8899999999999987654
No 25
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=23.69 E-value=34 Score=36.08 Aligned_cols=49 Identities=22% Similarity=0.453 Sum_probs=37.8
Q ss_pred eeeeeecccchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcCCCCchhHHHHHHhhc
Q 013185 258 WRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAK 316 (448)
Q Consensus 258 wRLekIgKdG~~hkrL~~~~I~tV~dFL~l~~~d~~kLR~iLg~gmS~k~We~~v~HAk 316 (448)
.+|.+|+.. ..++|.++||.|++|+. .|+.+|.+++| .+.-+.+++-|+
T Consensus 660 ~qlp~i~~~--rar~L~~~g~~s~~~l~----~~~~~l~~~l~----~~~~~~i~~~~~ 708 (715)
T 2va8_A 660 VQISGVGRK--RARLLYNNGIKELGDVV----MNPDKVKNLLG----QKLGEKVVQEAA 708 (715)
T ss_dssp HTSTTCCHH--HHHHHHHTTCCSHHHHH----HCHHHHHHHHC----HHHHHHHHHHHH
T ss_pred hhCCCCCHH--HHHHHHHcCCCCHHHHh----CCHHHHHHHhC----hhHHHHHHHHHH
Confidence 355566554 45789999999999976 58999999995 777777777554
No 26
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11
Probab=22.80 E-value=29 Score=30.87 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=27.6
Q ss_pred CCCCcccCCceeccCCCceEEEEEeCCCCceecc
Q 013185 101 LSLPLFTGGKVEGEQGTAIHIVLIDANTGHVVTT 134 (448)
Q Consensus 101 l~~pifTg~kI~a~~g~~I~V~L~D~~t~~iVt~ 134 (448)
+..|+|||.--.-+.|....|.|.|.+||+.-..
T Consensus 38 ~~~~~wtGrlrv~~~g~~~~I~LeD~~tGeLFA~ 71 (133)
T 1tqz_A 38 LDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQ 71 (133)
T ss_dssp CSSSCEEEEEEEECCSSSEEEEEECSSCCSSCEE
T ss_pred CCCceeEEEEEEEEeCCEEEEEEEeCCCCcEEEe
Confidence 5678999987666788889999999998876543
No 27
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=22.14 E-value=20 Score=29.03 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=18.7
Q ss_pred hhhhhcCCccHHHHHHHHhhChHHHHHH
Q 013185 271 KRLNKAGIFTVEDFLRLVVRDSQRLRNI 298 (448)
Q Consensus 271 krL~~~~I~tV~dFL~l~~~d~~kLR~i 298 (448)
.-|..+||+||+|++.. +++.|.++
T Consensus 29 NcLk~agI~Tv~dL~~~---se~dLlki 53 (79)
T 3gfk_B 29 NCLKRAGINTVQELANK---TEEDMMKV 53 (79)
T ss_dssp HHHHHTTCCBHHHHTTC---CHHHHTTS
T ss_pred HHHHHhCCCCHHHHHhC---CHHHHHHc
Confidence 46889999999998764 55555554
No 28
>3euh_C MUKE, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_G
Probab=21.08 E-value=96 Score=29.90 Aligned_cols=74 Identities=16% Similarity=0.295 Sum_probs=49.9
Q ss_pred hhhhhcCCccHHHHHHHHh--hChHHHHHHHcC--CCCchhHHHHHHhhcccc--cCCceEEEecCCCCcEEEEEccccc
Q 013185 271 KRLNKAGIFTVEDFLRLVV--RDSQRLRNILGS--GMSNKMWDVLVDHAKTCV--LSGKLYVYYPDDPRNVGVVFNNIYE 344 (448)
Q Consensus 271 krL~~~~I~tV~dFL~l~~--~d~~kLR~iLg~--gmS~k~We~~v~HAktCv--l~~k~y~y~~~~~~nv~l~FN~i~~ 344 (448)
++|++.||.|+++...-+. .|+++|.++++. +=|+.+-+++-+-.++|- +..--.++...+..+..-+=.+||-
T Consensus 107 erLa~~gift~qeL~eeL~sl~dE~kLlkl~~~R~~GSDlD~~kl~ekv~~sLrrL~RlgmI~~~~~d~~kf~iteavfR 186 (234)
T 3euh_C 107 ERLANEGIFTQQELYDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKVRSSLNRLRRLGMVWFMGHDSSKFRITESVFR 186 (234)
T ss_dssp GGGGGTTEEEHHHHHHHHHHHSCHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHTTSEEECSSSSSEEEECGGGGG
T ss_pred HHHhcCCcccHHHHHHHHHHhhCHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHHhcCcEEEecCCCCeEEecHHHHh
Confidence 6899999999999887653 489999999952 237778888888888885 3333445543322333344444443
Done!