Query 013187
Match_columns 448
No_of_seqs 194 out of 607
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 05:50:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rq8_A Conserved hypothetical 100.0 1.6E-28 5.4E-33 208.9 14.0 91 173-265 1-91 (104)
2 1jo0_A Hypothetical protein HI 100.0 3.4E-28 1.2E-32 204.4 13.2 88 173-261 2-89 (98)
3 3p04_A Uncharacterized BCR; SE 37.1 1.4E+02 0.0047 24.5 7.7 57 206-264 19-78 (87)
4 2wvr_A Geminin; DNA replicatio 33.7 43 0.0015 31.8 4.7 34 277-310 105-143 (209)
5 3ka5_A Ribosome-associated pro 31.6 63 0.0022 25.4 4.6 47 216-263 1-50 (65)
6 3sbx_A Putative uncharacterize 29.4 51 0.0017 30.1 4.3 35 181-216 130-164 (189)
7 2lw1_A ABC transporter ATP-bin 26.4 94 0.0032 24.8 4.9 32 288-319 21-52 (89)
8 3c1y_A DNA integrity scanning 24.2 1E+02 0.0036 31.3 5.9 34 227-260 125-159 (377)
9 2pnv_A Small conductance calci 21.6 98 0.0034 22.7 3.7 25 289-313 16-40 (43)
10 3k2t_A LMO2511 protein; lister 21.2 66 0.0023 24.5 2.9 46 217-263 2-50 (57)
11 2h9u_A DNA/RNA-binding protein 20.8 3.6E+02 0.012 22.5 7.6 66 190-255 6-74 (102)
12 1uii_A Geminin; human, DNA rep 20.5 1.7E+02 0.0058 24.2 5.4 33 277-311 36-68 (83)
13 3n70_A Transport activator; si 20.0 1.9E+02 0.0063 23.5 5.6 64 180-246 15-81 (145)
No 1
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.96 E-value=1.6e-28 Score=208.88 Aligned_cols=91 Identities=20% Similarity=0.354 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHhhhccCCceeeeCCCCCcHHHHHHHHHHHHhCCeeeEEecCCCHHHHHHHHHHHHHHhCCEEEEEeeCc
Q 013187 173 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 252 (448)
Q Consensus 173 ~LT~EERk~LRKlGhkLKPVV~IGKrGVTDgVIeeIh~AwK~HELVKVKvk~~s~ed~keIAeeLee~SGGeLVQViIG~ 252 (448)
|||++||++||++||+|+|+|+||++|||++|+++|++||++||||||+|.+++.++++++|++|++.|||++||+ ||+
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~-IG~ 79 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQV-IGS 79 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEE-ETT
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEE-ECC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999997 699
Q ss_pred EEEEEeCCCCCCC
Q 013187 253 TIIMYRGKNYAQP 265 (448)
Q Consensus 253 tIILYRGKNY~rP 265 (448)
++||||++. ..|
T Consensus 80 ~~VLYR~~~-~~~ 91 (104)
T 1rq8_A 80 MIVIYRESK-ENK 91 (104)
T ss_dssp EEEEEECCC-SCC
T ss_pred EEEEEeCCC-CCC
Confidence 999999976 344
No 2
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.95 E-value=3.4e-28 Score=204.41 Aligned_cols=88 Identities=18% Similarity=0.317 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHhhhccCCceeeeCCCCCcHHHHHHHHHHHHhCCeeeEEecCCCHHHHHHHHHHHHHHhCCEEEEEeeCc
Q 013187 173 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 252 (448)
Q Consensus 173 ~LT~EERk~LRKlGhkLKPVV~IGKrGVTDgVIeeIh~AwK~HELVKVKvk~~s~ed~keIAeeLee~SGGeLVQViIG~ 252 (448)
.||++||++||++||+|+|+|+||++|||++|+++|++||++||||||+|.+++.++++++|++|++.|||++||+ ||+
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~-IG~ 80 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQT-IGH 80 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEE-ETT
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEE-ECC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999997 699
Q ss_pred EEEEEeCCC
Q 013187 253 TIIMYRGKN 261 (448)
Q Consensus 253 tIILYRGKN 261 (448)
++||||++.
T Consensus 81 ~~vLyR~~~ 89 (98)
T 1jo0_A 81 ILVLYRPSE 89 (98)
T ss_dssp EEEEECCCS
T ss_pred EEEEEccCC
Confidence 999999874
No 3
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=37.13 E-value=1.4e+02 Score=24.51 Aligned_cols=57 Identities=11% Similarity=0.012 Sum_probs=49.2
Q ss_pred HHHHHHHHhCCeeeEEecCCCHHHHHHHHHHHHH---HhCCEEEEEeeCcEEEEEeCCCCCC
Q 013187 206 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELAR---LTGGIVLEIHEENTIIMYRGKNYAQ 264 (448)
Q Consensus 206 eeIh~AwK~HELVKVKvk~~s~ed~keIAeeLee---~SGGeLVQViIG~tIILYRGKNY~r 264 (448)
.+|-++|+....|=|.+...+.++.+++...++- ..+|.+.. +|..+.|+=++|.+-
T Consensus 19 ~~I~d~Lr~~~~VvvNL~~ld~~~AqRivDF~sG~~yal~G~i~k--I~~~IFl~~P~~V~i 78 (87)
T 3p04_A 19 QVIGGAFRDGDAVVFDMSLLSREEARRIVDFAAGLCFALHGKMQK--IDSVTFAVVPELSNI 78 (87)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHHHHHTTCEEEE--EETTEEEEECCCCCC
T ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHhccceEEeccEEEE--EcCCEEEEECCCeEE
Confidence 5789999999999999999999999999999887 56999885 478888888888643
No 4
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=33.68 E-value=43 Score=31.84 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHh-----hhHHHHhhHHHHHHHHHHHHH
Q 013187 277 SRKKALDKSKYRD-----GLRAVKKYIPKLEQELELLRA 310 (448)
Q Consensus 277 tKrkAL~rS~e~Q-----r~eslk~~I~~le~~ie~l~~ 310 (448)
.||+||.-++.+- +++.+..-|..|.++++.|+.
T Consensus 105 ~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 105 KRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999998763 444444445555555444443
No 5
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=31.61 E-value=63 Score=25.45 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=34.3
Q ss_pred CeeeEEecCCCHHHHHHHHHHHHHHhCCEEEEEe---eCcEEEEEeCCCCC
Q 013187 216 QTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYA 263 (448)
Q Consensus 216 ELVKVKvk~~s~ed~keIAeeLee~SGGeLVQVi---IG~tIILYRGKNY~ 263 (448)
++|+.+--...+..+.+++.+++-.-.--+| .+ -|.+-|+||.++..
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~v-F~n~etg~~nVVYRR~dG~ 50 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFV-FQNGDSNEVNVVYKRKDGN 50 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEE-EEETTTTEEEEEEECTTSC
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhCCCcEEE-EEeCCCCCEEEEEEeCCCC
Confidence 4677777666777888899998876444444 43 38899999988754
No 6
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=29.43 E-value=51 Score=30.12 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=28.0
Q ss_pred HHHhhhccCCceeeeCCCCCcHHHHHHHHHHHHhCC
Q 013187 181 YFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 216 (448)
Q Consensus 181 ~LRKlGhkLKPVV~IGKrGVTDgVIeeIh~AwK~HE 216 (448)
-+..+|.+-+|++.+|.+|.++.+++-++ ++-...
T Consensus 130 t~~qlg~~~kPvvlln~~gfw~~l~~~l~-~~~~~G 164 (189)
T 3sbx_A 130 TEGYLGMHDKSIVVLDPWGHFDGLRAWLS-ELADTG 164 (189)
T ss_dssp HHHHTTSCCCCEEEECTTCTTHHHHHHHH-HHHHTT
T ss_pred HHHHhcccCCCEEEecCCccchHHHHHHH-HHHHCC
Confidence 45677888899999999999999998886 444443
No 7
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=26.38 E-value=94 Score=24.78 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=26.8
Q ss_pred HhhhHHHHhhHHHHHHHHHHHHHHHhhhcccc
Q 013187 288 RDGLRAVKKYIPKLEQELELLRAQAETRSENR 319 (448)
Q Consensus 288 ~Qr~eslk~~I~~le~~ie~l~~~~~~~~~~~ 319 (448)
...++.|-.-|..||.+|..|..+|...+-+.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~ 52 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFS 52 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 34488999999999999999999998876543
No 8
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=24.25 E-value=1e+02 Score=31.29 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhCCEEEEEee-CcEEEEEeCC
Q 013187 227 AEEVKEIAAELARLTGGIVLEIHE-ENTIIMYRGK 260 (448)
Q Consensus 227 ~ed~keIAeeLee~SGGeLVQViI-G~tIILYRGK 260 (448)
...++.+|.-|.+.|+|.+|-|.. .++|-+|++-
T Consensus 125 lGtRHRAA~gise~tdaivIvVSEetG~Isl~~~G 159 (377)
T 3c1y_A 125 TGTRHRTAERLAKQTGKVVIAVSRRRNIISLYYKN 159 (377)
T ss_dssp CSHHHHHHHHHHHHHSSEEEEECSSCCCEEEECSS
T ss_pred CcHHHHHHHHHHHhcCCEEEEEEccCCcEEEEECC
Confidence 457899999999999999996642 4466666643
No 9
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=21.65 E-value=98 Score=22.68 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.0
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHh
Q 013187 289 DGLRAVKKYIPKLEQELELLRAQAE 313 (448)
Q Consensus 289 Qr~eslk~~I~~le~~ie~l~~~~~ 313 (448)
-|.+.|...|..||..++.|..++.
T Consensus 16 ~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 16 ERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999998874
No 10
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=21.20 E-value=66 Score=24.53 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=29.0
Q ss_pred eeeEEecCCCHHHHHHHHHHHHHHhCCEEEEEe---eCcEEEEEeCCCCC
Q 013187 217 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYA 263 (448)
Q Consensus 217 LVKVKvk~~s~ed~keIAeeLee~SGGeLVQVi---IG~tIILYRGKNY~ 263 (448)
+|+.+--...+..+.+++.+|+-.-.--+| .+ -|.+-|+||.++..
T Consensus 2 ivr~K~~~~kpmsveEAv~qmel~gh~F~v-F~n~~t~~~nVvYrR~dG~ 50 (57)
T 3k2t_A 2 IVRTKQFSLKPMDSEEAVLQMNLLGHSFYV-YTDAETNGTNIVYSRKDGK 50 (57)
T ss_dssp CCCCCC---CCBCHHHHHHHHHHHTCSEEE-EEBSSSCCEEEEEECTTSC
T ss_pred eEEEEeccCCCCCHHHHHHHHHhCCCcEEE-EEcCCCCCEEEEEEeCCCC
Confidence 344444444555677888888876555555 43 38899999988754
No 11
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=20.76 E-value=3.6e+02 Score=22.49 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=49.8
Q ss_pred CceeeeCCCCCcHHHHHHHHHHHHh-CCeeeEEecCCCHHHHHHHHHHHHHHh-CCEEEEE-eeCcEEE
Q 013187 190 KNYVPVGRRGIYQGVILNMHLHWKK-HQTLKVIVKTFSAEEVKEIAAELARLT-GGIVLEI-HEENTII 255 (448)
Q Consensus 190 KPVV~IGKrGVTDgVIeeIh~AwK~-HELVKVKvk~~s~ed~keIAeeLee~S-GGeLVQV-iIG~tII 255 (448)
...|.||+.|++.-|...+...|.. +.=|.|+-.+..-...-.+|+.|.+.. +|.-||. .+|...|
T Consensus 6 ~n~I~V~~k~~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i 74 (102)
T 2h9u_A 6 APEVRIGRKPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEI 74 (102)
T ss_dssp CCEEECCSSCHHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEE
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEE
Confidence 4789999999988888777455643 677888888877777788999999999 6765453 3565554
No 12
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=20.46 E-value=1.7e+02 Score=24.23 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHH
Q 013187 277 SRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 311 (448)
Q Consensus 277 tKrkAL~rS~e~Qr~eslk~~I~~le~~ie~l~~~ 311 (448)
.||+||.-++..- +.|..-|..++.+|..|+..
T Consensus 36 ~RR~AL~eaL~EN--~~Lh~~ie~l~eEi~~lk~e 68 (83)
T 1uii_A 36 KRRKALYEALKEN--EKLHKEIEQKDNEIARLKKE 68 (83)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4789999998763 33444455555555555443
No 13
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=20.03 E-value=1.9e+02 Score=23.53 Aligned_cols=64 Identities=11% Similarity=0.005 Sum_probs=42.1
Q ss_pred HHHHhhhccCCceeeeCCCCCcHHHHHH-HHHHH--HhCCeeeEEecCCCHHHHHHHHHHHHHHhCCEEE
Q 013187 180 FYFLKMGRKCKNYVPVGRRGIYQGVILN-MHLHW--KKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL 246 (448)
Q Consensus 180 k~LRKlGhkLKPVV~IGKrGVTDgVIee-Ih~Aw--K~HELVKVKvk~~s~ed~keIAeeLee~SGGeLV 246 (448)
..++..+..-.|++..|-.|.--..+.. ||.+. ....+| |.|...... ......++...||+++
T Consensus 15 ~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--~~~~~~~~~a~~g~l~ 81 (145)
T 3n70_A 15 RRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--PQLNDFIALAQGGTLV 81 (145)
T ss_dssp HHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--SCHHHHHHHHTTSCEE
T ss_pred HHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--hhhhcHHHHcCCcEEE
Confidence 4455567777899999999999887654 44433 245788 998764322 3344455566666655
Done!