BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013189
(448 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 380 bits (976), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/317 (59%), Positives = 237/317 (74%), Gaps = 14/317 (4%)
Query: 133 VETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTG 192
VE +G N PP + +F+++++GE + NI +Y +PTPVQ+HAIPI RDLMACAQTG
Sbjct: 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 62
Query: 193 SGKTAAFCFPIISGI--------MREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244
SGKTAAF PI+S I +R G R YP++L+LAPTREL+ QI+ EA+
Sbjct: 63 SGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 122
Query: 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 304
KFSY++ V+ V YGGA I QQ+R+LERG +LVATPGRLVD++ER ++ L +YL LD
Sbjct: 123 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 182
Query: 305 EADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGR 364
EADRMLDMGFEPQIR+IV+Q MPP G+R TM+FSATFPKEIQ LA DFL YIFLAVGR
Sbjct: 183 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 242
Query: 365 VGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWL 424
VGS+++ I Q+V +V ESDKRS L+DLL+A GK +LTLVFVETKKGAD+LE +L
Sbjct: 243 VGSTSENITQKVVWVEESDKRSFLLDLLNAT------GKDSLTLVFVETKKGADSLEDFL 296
Query: 425 YMNGFPATTIHGDRTQQ 441
Y G+ T+IHGDR+Q+
Sbjct: 297 YHEGYACTSIHGDRSQR 313
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 210/322 (65%), Gaps = 15/322 (4%)
Query: 121 TGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISI 180
+GI+F Y +IPV+ +G +VP + F DL + + N+ + Y PTP+Q+ +IP+
Sbjct: 32 SGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVIS 91
Query: 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240
GRDLMACAQTGSGKTAAF PI+S ++ + P P +I++PTREL+ QI
Sbjct: 92 SGRDLMACAQTGSGKTAAFLLPILSKLLED-----PHELELGRPQVVIVSPTRELAIQIF 146
Query: 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRY 300
EA+KF++++ +K+ + YGG Q + RG +++ATPGRL+D ++R ++ + R+
Sbjct: 147 NEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRF 206
Query: 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFL 360
+ LDEADRMLDMGF +R+I+ + M P QT++FSATFP+EIQR+A +FL NY+F+
Sbjct: 207 VVLDEADRMLDMGFSEDMRRIMTHVTMRPE--HQTLMFSATFPEEIQRMAGEFLKNYVFV 264
Query: 361 AVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADAL 420
A+G VG + + Q + V++ KRS L+++L Q A+G T+VFVETK+GAD L
Sbjct: 265 AIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQ-ADG-------TIVFVETKRGADFL 316
Query: 421 EHWLYMNGFPATTIHGDRTQQR 442
+L FP T+IHGDR Q +
Sbjct: 317 ASFLSEKEFPTTSIHGDRLQSQ 338
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 278 bits (711), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 136/254 (53%), Positives = 183/254 (72%), Gaps = 3/254 (1%)
Query: 125 FDAYEDIPVETSGENVPP--AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG 182
FD Y+ IPV +G + + F E+ L + NI Y +PTP+Q++AIP +
Sbjct: 1 FDKYDSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEH 60
Query: 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242
RD+MACAQTGSGKTAAF PII+ ++ + Q+ R S+T YP LILAPTREL+ QI E
Sbjct: 61 RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQ-RYSKTAYPKCLILAPTRELAIQILSE 119
Query: 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLA 302
++KFS T ++ V YGGA + Q+RE++ G +LVATPGRLVD +E+ ++SL+ +Y+
Sbjct: 120 SQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIV 179
Query: 303 LDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAV 362
LDEADRMLDMGFEPQIRKI+++ +MP RQT++FSATFPKEIQ+LA+DFL NYIF+ V
Sbjct: 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239
Query: 363 GRVGSSTDLIVQRV 376
GRVGS++D I Q +
Sbjct: 240 GRVGSTSDSIKQEI 253
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 198 bits (503), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 145/231 (62%), Gaps = 9/231 (3%)
Query: 133 VETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTG 192
+ G N P V F E + + I R + +PT +Q P+++ G D++ AQTG
Sbjct: 17 ITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTG 76
Query: 193 SGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGV 252
SGKT ++ P I I + +++R G P+ L+LAPTREL+ Q+ A ++ +
Sbjct: 77 SGKTLSYLLPAIVHINHQPFLERGDG-----PICLVLAPTRELAQQVQQVAAEYCRACRL 131
Query: 253 KVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM 312
K YGGAP Q+R+LERGV+I +ATPGRL+D LE + +L+ YL LDEADRMLDM
Sbjct: 132 KSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDM 191
Query: 313 GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG 363
GFEPQIRKIV Q+ RQT+++SAT+PKE+++LA DFL +YI + +G
Sbjct: 192 GFEPQIRKIVDQIRPD----RQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 198 bits (503), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 145/231 (62%), Gaps = 9/231 (3%)
Query: 133 VETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTG 192
+ G N P V F E + + I R + +PT +Q P+++ G D++ AQTG
Sbjct: 31 ITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTG 90
Query: 193 SGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGV 252
SGKT ++ P I I + +++R G P+ L+LAPTREL+ Q+ A ++ +
Sbjct: 91 SGKTLSYLLPAIVHINHQPFLERGDG-----PICLVLAPTRELAQQVQQVAAEYCRACRL 145
Query: 253 KVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM 312
K YGGAP Q+R+LERGV+I +ATPGRL+D LE + +L+ YL LDEADRMLDM
Sbjct: 146 KSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDM 205
Query: 313 GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG 363
GFEPQIRKIV Q+ RQT+++SAT+PKE+++LA DFL +YI + +G
Sbjct: 206 GFEPQIRKIVDQIRPD----RQTLMWSATWPKEVRQLAEDFLKDYIHINIG 252
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 128/204 (62%), Gaps = 9/204 (4%)
Query: 159 NIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 218
+I R +KPTP+Q A PI + G DL+ AQTG+GKT ++ P + + + R
Sbjct: 34 SIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 93
Query: 219 SRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILV 278
P L+L PTREL+ + E K+SY+ G+K + YGG N Q+ ++ +GVDI++
Sbjct: 94 G----PGMLVLTPTRELALHVEAECSKYSYK-GLKSICIYGGRNRNGQIEDISKGVDIII 148
Query: 279 ATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLF 338
ATPGRL DL V+L+ I YL +DEAD+MLDM FEPQIRKI+ +D+ P RQT++
Sbjct: 149 ATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKIL--LDVRPD--RQTVMT 204
Query: 339 SATFPKEIQRLASDFLANYIFLAV 362
SAT+P +++LA +L + + + V
Sbjct: 205 SATWPDTVRQLALSYLKDPMIVYV 228
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 157/302 (51%), Gaps = 30/302 (9%)
Query: 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGR-DLMACAQTGSGKTAAFCFPII 204
F E++L + + IR + KPT +Q IP+ + +++A A+TGSGKTA+F P+I
Sbjct: 7 NFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66
Query: 205 SGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPIN 264
+ ++ A+IL PTREL+ Q+ E + +K+ YGG I
Sbjct: 67 ELVNENNGIE-----------AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIY 115
Query: 265 QQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324
Q++ L + +I+V TPGR++D + R ++L+ ++Y LDEAD L+ GF + KI+
Sbjct: 116 PQIKAL-KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNA 174
Query: 325 MDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDK 384
+ ++ +LFSAT P+EI LA + +Y F+ ++ ++ I Q V+E+++
Sbjct: 175 CNKD----KRILLFSATXPREILNLAKKYXGDYSFIK-AKINAN---IEQSYVEVNENER 226
Query: 385 RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQ-QRT 443
L LL K+ LVF +TK+ L L GF A IHGD +Q QR
Sbjct: 227 FEALCRLL--------KNKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQRE 278
Query: 444 SI 445
+
Sbjct: 279 KV 280
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 135/253 (53%), Gaps = 38/253 (15%)
Query: 111 AEQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTP 170
A QP+ EEE T TF ++ + + L + + KPT
Sbjct: 32 ASQPIVEEEET-----------------------KTFKDLGVTDVLCEACDQLGWTKPTK 68
Query: 171 VQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA 230
+Q AIP+++ GRD++ A+TGSGKT AF PI++ ++ + QR AL+L
Sbjct: 69 IQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL--ETPQR--------LFALVLT 118
Query: 231 PTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER 290
PTREL+ QI + + GV+ V GG Q L + I++ATPGRL+D LE
Sbjct: 119 PTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLEN 178
Query: 291 AR-VSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRL 349
+ +L+ ++YL +DEADR+L+M FE ++ KI++ + P R+T LFSAT K++Q+L
Sbjct: 179 TKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI----PRDRKTFLFSATMTKKVQKL 234
Query: 350 ASDFLANYIFLAV 362
L N + AV
Sbjct: 235 QRAALKNPVKCAV 247
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 110/195 (56%), Gaps = 13/195 (6%)
Query: 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLAL 227
PTP+Q A+P+++ G+DL+ A+TG+GKT AF PI + P R P AL
Sbjct: 24 PTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLA-------PSQERGRKPRAL 76
Query: 228 ILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDL 287
+L PTREL+ Q+ E + +KVV YGG +Q L RG D +VATPGR +D
Sbjct: 77 VLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDY 134
Query: 288 LERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347
L + + L + LDEAD ML MGFE ++ + + PP RQT+LFSAT P +
Sbjct: 135 LRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEAL---LSATPPS-RQTLLFSATLPSWAK 190
Query: 348 RLASDFLANYIFLAV 362
RLA ++ N + + V
Sbjct: 191 RLAERYMKNPVLINV 205
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 110/195 (56%), Gaps = 13/195 (6%)
Query: 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLAL 227
PTP++ A+P+++ G+DL+ A+TG+GKT AF PI + P R P AL
Sbjct: 24 PTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLA-------PSQERGRKPRAL 76
Query: 228 ILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDL 287
+L PTREL+ Q+ E + +KVV YGG +Q L RG D +VATPGR +D
Sbjct: 77 VLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDY 134
Query: 288 LERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347
L + + L + LDEAD ML MGFE ++ + + PP RQT+LFSAT P +
Sbjct: 135 LRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEAL---LSATPPS-RQTLLFSATLPSWAK 190
Query: 348 RLASDFLANYIFLAV 362
RLA ++ N + + V
Sbjct: 191 RLAERYMKNPVLINV 205
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 163/336 (48%), Gaps = 39/336 (11%)
Query: 115 VAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRH 174
+ EE+ T + F+ E++ +V P TF + L E L I + KP+ +Q+
Sbjct: 17 LKEEDMTKVEFETSEEV-------DVTP---TFDTMGLREDLLRGIYAYGFEKPSAIQQR 66
Query: 175 AIPISIGGRDLMACAQTGSGKTAAFCFPIISGI---MREQYVQRPRGSRTVYPLALILAP 231
AI I GRD++A +Q+G+GKTA F ++ + +RE ALILAP
Sbjct: 67 AIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQ-------------ALILAP 113
Query: 232 TRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA 291
TREL+ QI V+ GG + + +R+L+ G ++ TPGR+ D++ R
Sbjct: 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR 173
Query: 292 RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS 351
+ + I+ L LDEAD ML+ GF+ QI + + + PP Q +L SAT P EI + +
Sbjct: 174 SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL---PPAT-QVVLISATLPHEILEMTN 229
Query: 352 DFLANYIFLAVGRVGSSTDLIVQ-RVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVF 410
F+ + I + V R + + I Q V E K L DL QA ++F
Sbjct: 230 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT-----QA--VIF 282
Query: 411 VETKKGADALEHWLYMNGFPATTIHGDRTQ-QRTSI 445
TK+ D L + F +++HGD Q +R SI
Sbjct: 283 CNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESI 318
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 163/336 (48%), Gaps = 39/336 (11%)
Query: 115 VAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRH 174
+ EE+ T + F+ E++ +V P TF + L E L I + KP+ +Q+
Sbjct: 18 LKEEDMTKVEFETSEEV-------DVTP---TFDTMGLREDLLRGIYAYGFEKPSAIQQR 67
Query: 175 AIPISIGGRDLMACAQTGSGKTAAFCFPIISGI---MREQYVQRPRGSRTVYPLALILAP 231
AI I GRD++A +Q+G+GKTA F ++ + +RE ALILAP
Sbjct: 68 AIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQ-------------ALILAP 114
Query: 232 TRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA 291
TREL+ QI V+ GG + + +R+L+ G ++ TPGR+ D++ R
Sbjct: 115 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR 174
Query: 292 RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS 351
+ + I+ L LDEAD ML+ GF+ QI + + + PP Q +L SAT P EI + +
Sbjct: 175 SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL---PPAT-QVVLISATLPHEILEMTN 230
Query: 352 DFLANYIFLAVGRVGSSTDLIVQ-RVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVF 410
F+ + I + V R + + I Q V E K L DL QA ++F
Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT-----QA--VIF 283
Query: 411 VETKKGADALEHWLYMNGFPATTIHGDRTQ-QRTSI 445
TK+ D L + F +++HGD Q +R SI
Sbjct: 284 CNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESI 319
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 163/336 (48%), Gaps = 39/336 (11%)
Query: 115 VAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRH 174
+ EE+ T + F+ E++ +V P TF + L E L I + KP+ +Q+
Sbjct: 18 LKEEDMTKVEFETSEEV-------DVTP---TFDTMGLREDLLRGIYAYGFEKPSAIQQR 67
Query: 175 AIPISIGGRDLMACAQTGSGKTAAFCFPIISGI---MREQYVQRPRGSRTVYPLALILAP 231
AI I GRD++A +Q+G+GKTA F ++ + +RE ALILAP
Sbjct: 68 AIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQ-------------ALILAP 114
Query: 232 TRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA 291
TREL+ QI V+ GG + + +R+L+ G ++ TPGR+ D++ R
Sbjct: 115 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR 174
Query: 292 RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS 351
+ + I+ L LDEAD ML+ GF+ QI + + + PP Q +L SAT P EI + +
Sbjct: 175 SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL---PPAT-QVVLISATLPHEILEMTN 230
Query: 352 DFLANYIFLAVGRVGSSTDLIVQ-RVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVF 410
F+ + I + V R + + I Q V E K L DL QA ++F
Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT-----QA--VIF 283
Query: 411 VETKKGADALEHWLYMNGFPATTIHGDRTQ-QRTSI 445
TK+ D L + F +++HGD Q +R SI
Sbjct: 284 CNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESI 319
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 157/321 (48%), Gaps = 33/321 (10%)
Query: 131 IPVETSGE-NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACA 189
+ ETS E +V P TF + L E L I + KP+ +Q+ AI I GRD++A +
Sbjct: 4 VEFETSEEVDVTP---TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQS 60
Query: 190 QTGSGKTAAFCFPIISGI---MREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246
Q+G+GKTA F ++ + +RE ALILAPTREL+ QI
Sbjct: 61 QSGTGKTATFSISVLQCLDIQVRETQ-------------ALILAPTRELAVQIQKGLLAL 107
Query: 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEA 306
V+ GG + + +R+L+ G ++ TPGR+ D++ R + + I+ L LDEA
Sbjct: 108 GDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEA 167
Query: 307 DRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVG 366
D ML+ GF+ QI + + + PP Q +L SAT P EI + + F+ + I + V R
Sbjct: 168 DEMLNKGFKEQIYDVYRYL---PPAT-QVVLISATLPHEILEMTNKFMTDPIRILVKRDE 223
Query: 367 SSTDLIVQ-RVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLY 425
+ + I Q V E K L DL QA ++F TK+ D L +
Sbjct: 224 LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT-----QA--VIFCNTKRKVDWLTEKMR 276
Query: 426 MNGFPATTIHGDRTQ-QRTSI 445
F +++HGD Q +R SI
Sbjct: 277 EANFTVSSMHGDMPQKERESI 297
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 149/309 (48%), Gaps = 23/309 (7%)
Query: 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 198
N V++F +++L E+L I + KP+ +Q+ AI I G D++A AQ+G+GKTA
Sbjct: 34 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTAT 93
Query: 199 FCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAY 258
F I+ I + + AL+LAPTREL+ QI G
Sbjct: 94 FAISILQQIELDLKATQ----------ALVLAPTRELAQQIQKVVMALGDYMGASCHACI 143
Query: 259 GGAPINQQLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQ 317
GG + ++++L+ I+V TPGR+ D+L R +S + I+ LDEAD ML GF+ Q
Sbjct: 144 GGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQ 203
Query: 318 IRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ-RV 376
I I Q+++ Q +L SAT P ++ + F+ + I + V + + + I Q +
Sbjct: 204 IYDIFQKLN----SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYI 259
Query: 377 EFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHG 436
E K L DL QA ++F+ T++ D L ++ F + +HG
Sbjct: 260 NVEREEWKLDTLCDLYETLTIT-----QA--VIFINTRRKVDWLTEKMHARDFTVSAMHG 312
Query: 437 DRTQQRTSI 445
D Q+ +
Sbjct: 313 DMDQKERDV 321
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 149/305 (48%), Gaps = 29/305 (9%)
Query: 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIIS 205
TF + L E L I + KP+ +Q+ AI I GRD++A +Q+G+GKTA F ++
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 206 GI---MREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAP 262
+ +RE ALILAPTREL+ Q+ V+ GG
Sbjct: 62 CLDIQVRETQ-------------ALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTN 108
Query: 263 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322
+ + +R+L+ G ++ TPGR+ D++ R + + I+ L LDEAD ML+ GF+ QI +
Sbjct: 109 VGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVY 168
Query: 323 QQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ-RVEFVHE 381
+ + PP Q +L SAT P EI + + F+ + I + V R + + I Q V E
Sbjct: 169 RYL---PPAT-QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE 224
Query: 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQ- 440
K L DL QA ++F TK+ D L + F +++HGD Q
Sbjct: 225 EWKFDTLCDLYDTLTIT-----QA--VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQK 277
Query: 441 QRTSI 445
+R SI
Sbjct: 278 ERESI 282
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 126/263 (47%), Gaps = 33/263 (12%)
Query: 152 LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQ 211
+ E + IR + T VQ IP+ + G++++ A+TGSGKTAA+ PI+ M+
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMK-- 58
Query: 212 YVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE 271
+L++ PTREL+ Q+ + KV YGG P Q+ +
Sbjct: 59 --------------SLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV- 103
Query: 272 RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPG 331
R DI+VATPGRL+DL + + L + +DEAD M +MGF I+ I+ Q
Sbjct: 104 RNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQ----TSN 159
Query: 332 MRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDL 391
+ T LFSAT P+EI+++ DF+ NY + + L +FVH D +
Sbjct: 160 RKITGLFSATIPEEIRKVVKDFITNY-----EEIEACIGLANVEHKFVHVKDDWRSKVQA 214
Query: 392 LHAQVANGVHGKQALTLVFVETK 414
L GV +VFV T+
Sbjct: 215 LRENKDKGV-------IVFVRTR 230
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 109/205 (53%), Gaps = 14/205 (6%)
Query: 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPII 204
NTF + L L + I + KP+P+Q AIP++I GRD++A A+ G+GKTAAF P +
Sbjct: 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL 80
Query: 205 SGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPIN 264
+ +P+ ++ ALI+ PTREL+ Q + G+ +V GG +
Sbjct: 81 EKV-------KPKLNKIQ---ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLR 130
Query: 265 QQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324
+ L V ILV TPGR++DL R L +DEAD+ML F+ I +I+
Sbjct: 131 DDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSF 190
Query: 325 MDMPPPGMRQTMLFSATFPKEIQRL 349
+PP Q++LFSATFP ++
Sbjct: 191 --LPPT--HQSLLFSATFPLTVKEF 211
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 149/309 (48%), Gaps = 23/309 (7%)
Query: 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 198
N V++F +++L E+L I + KP+ +Q+ AI I G D++A AQ+G+GKTA
Sbjct: 8 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTAT 67
Query: 199 FCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAY 258
F I+ I + + AL+LAPTREL+ QI G
Sbjct: 68 FAISILQQIELDLKATQ----------ALVLAPTRELAQQIQKVVMALGDYMGASCHACI 117
Query: 259 GGAPINQQLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQ 317
GG + ++++L+ I+V TPGR+ D+L R +S + I+ LDEAD ML GF+ Q
Sbjct: 118 GGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQ 177
Query: 318 IRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ-RV 376
I I Q+++ Q +L SAT P ++ + F+ + I + V + + + I Q +
Sbjct: 178 IYDIFQKLNSNT----QVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYI 233
Query: 377 EFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHG 436
E K L DL QA ++F+ T++ D L ++ F + +HG
Sbjct: 234 NVEREEWKLDTLCDLYETLTIT-----QA--VIFINTRRKVDWLTEKMHARDFTVSAMHG 286
Query: 437 DRTQQRTSI 445
D Q+ +
Sbjct: 287 DMDQKERDV 295
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 149/305 (48%), Gaps = 29/305 (9%)
Query: 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIIS 205
TF + L E L I + KP+ +Q+ AI I GRD++A +Q+G+GKTA F ++
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 206 GI---MREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAP 262
+ +RE ALILAPTREL+ Q+ V+ GG
Sbjct: 62 CLDIQVRETQ-------------ALILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTN 108
Query: 263 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322
+ + +R+L+ G ++ TPGR+ D++ R + + I+ L LDEAD ML+ GF+ QI +
Sbjct: 109 VGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVY 168
Query: 323 QQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ-RVEFVHE 381
+ + PP Q +L SAT P E+ + + F+ + I + V R + + I Q V E
Sbjct: 169 RYL---PPAT-QVVLISATLPHEVLEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE 224
Query: 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQ- 440
K L DL QA ++F TK+ D L + F +++HGD Q
Sbjct: 225 EWKFDTLCDLYDTLTIT-----QA--VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQK 277
Query: 441 QRTSI 445
+R SI
Sbjct: 278 ERESI 282
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 122/214 (57%), Gaps = 21/214 (9%)
Query: 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPII 204
N F + L L + I + KP+P+Q +IPI++ GRD++A A+ G+GK+ A+ P++
Sbjct: 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 62
Query: 205 SGI-MREQYVQRPRGSRTVYPLALILAPTRELS---SQIHVEAKKFSYQTGVKVVVAYGG 260
+ +++ +Q A+++ PTREL+ SQI ++ K + G KV+ GG
Sbjct: 63 ERLDLKKDNIQ-----------AMVIVPTRELALQVSQICIQVSK--HMGGAKVMATTGG 109
Query: 261 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRK 320
+ + L+ V +++ATPGR++DL+++ + ++ + LDEAD++L F +
Sbjct: 110 TNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF----VQ 165
Query: 321 IVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL 354
I++ + + P RQ +L+SATFP +Q+ + L
Sbjct: 166 IMEDIILTLPKNRQILLYSATFPLSVQKFMNSHL 199
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 151/303 (49%), Gaps = 33/303 (10%)
Query: 141 PPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFC 200
P ++ F + L L I C + P+ VQ IP +I G D++ A++G GKTA F
Sbjct: 3 PGHMSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 62
Query: 201 FPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS-YQTGVKVVVAYG 259
+ Q ++ G +V L++ TREL+ QI E ++FS Y VKV V +G
Sbjct: 63 LATL------QQLEPVTGQVSV----LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFG 112
Query: 260 GAPINQQLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQI 318
G I + L++ I+V TPGR++ L ++L+ I++ LDEAD+ML+ + +
Sbjct: 113 GLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEADKMLE---QLDM 169
Query: 319 RKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN--YIFLAVGRVGSSTDLIVQRV 376
R+ VQ++ P +Q M+FSAT KEI+ + F+ + IF V T L + +
Sbjct: 170 RRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF-----VDDETKLTLHGL 224
Query: 377 EFVH----ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPAT 432
+ + +++K L DLL N V ++FV++ + AL L FPA
Sbjct: 225 QQYYVKLKDNEKNRKLFDLLDVLEFNQV-------VIFVKSVQRCIALAQLLVEQNFPAI 277
Query: 433 TIH 435
IH
Sbjct: 278 AIH 280
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 142/281 (50%), Gaps = 33/281 (11%)
Query: 163 CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222
C + P+ VQ IP +I G D++ A++G GKTA F + Q ++ G +V
Sbjct: 26 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL------QQLEPVTGQVSV 79
Query: 223 YPLALILAPTRELSSQIHVEAKKFS-YQTGVKVVVAYGGAPINQQLRELERGV-DILVAT 280
L++ TREL+ QI E ++FS Y VKV V +GG I + L++ I+V T
Sbjct: 80 ----LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGT 135
Query: 281 PGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340
PGR++ L ++L+ I++ LDE D+ML+ + +R+ VQ++ P +Q M+FSA
Sbjct: 136 PGRILALARNKSLNLKHIKHFILDECDKMLE---QLDMRRDVQEIFRMTPHEKQVMMFSA 192
Query: 341 TFPKEIQRLASDFLAN--YIFLAVGRVGSSTDLIVQRVEFVH----ESDKRSHLMDLLHA 394
T KEI+ + F+ + IF V T L + ++ + +++K L DLL
Sbjct: 193 TLSKEIRPVCRKFMQDPMEIF-----VDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDV 247
Query: 395 QVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIH 435
N V ++FV++ + AL L FPA IH
Sbjct: 248 LEFNQV-------VIFVKSVQRCIALAQLLVEQNFPAIAIH 281
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 142/281 (50%), Gaps = 33/281 (11%)
Query: 163 CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222
C + P+ VQ IP +I G D++ A++G GKTA F + Q ++ G +V
Sbjct: 26 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL------QQLEPVTGQVSV 79
Query: 223 YPLALILAPTRELSSQIHVEAKKFS-YQTGVKVVVAYGGAPINQQLRELERGV-DILVAT 280
L++ TREL+ QI E ++FS Y VKV V +GG I + L++ I+V T
Sbjct: 80 ----LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGT 135
Query: 281 PGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340
PGR++ L ++L+ I++ LDE D+ML+ + +R+ VQ++ P +Q M+FSA
Sbjct: 136 PGRILALARNKSLNLKHIKHFILDECDKMLE---QLDMRRDVQEIFRMTPHEKQVMMFSA 192
Query: 341 TFPKEIQRLASDFLAN--YIFLAVGRVGSSTDLIVQRVEFVH----ESDKRSHLMDLLHA 394
T KEI+ + F+ + IF V T L + ++ + +++K L DLL
Sbjct: 193 TLSKEIRPVCRKFMQDPMEIF-----VDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDV 247
Query: 395 QVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIH 435
N V ++FV++ + AL L FPA IH
Sbjct: 248 LEFNQV-------VIFVKSVQRCIALAQLLVEQNFPAIAIH 281
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 143/303 (47%), Gaps = 21/303 (6%)
Query: 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 198
N V F +++L E L + + +P+ +Q+ AI I G D++A AQ+G+GKT
Sbjct: 16 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 75
Query: 199 FCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAY 258
F + I + P AL+LAPTREL+ QI ++ +KV
Sbjct: 76 FSIAALQRI----------DTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACI 125
Query: 259 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQI 318
GG + L R I+V TPGR+ D ++R R I+ LDEAD ML GF+ QI
Sbjct: 126 GGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQI 184
Query: 319 RKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEF 378
+I + PP Q +L SAT P ++ + + F+ N + + V + + + I Q
Sbjct: 185 YQI---FTLLPPTT-QVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVN 240
Query: 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDR 438
V E + + + L+ + + QA ++F T++ + L L + F + I+ D
Sbjct: 241 VEEEEYKYECLTDLY----DSISVTQA--VIFCNTRRKVEELTTKLRNDKFTVSAIYSDL 294
Query: 439 TQQ 441
QQ
Sbjct: 295 PQQ 297
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 115/192 (59%), Gaps = 11/192 (5%)
Query: 160 IRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGS 219
I+ + T +Q +I + GRDL+A A+TGSGKT AF P + I++ +++ PR
Sbjct: 69 IKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRNG 126
Query: 220 RTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVA 279
V LIL+PTREL+ Q K+ + GG+ + + ++L G++I+VA
Sbjct: 127 TGV----LILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVA 182
Query: 280 TPGRLVDLLERA-RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLF 338
TPGRL+D ++ + ++ L +DEADR+LD+GFE ++++I++ + P RQTMLF
Sbjct: 183 TPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL----PTRRQTMLF 238
Query: 339 SATFPKEIQRLA 350
SAT ++++ LA
Sbjct: 239 SATQTRKVEDLA 250
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 132/243 (54%), Gaps = 26/243 (10%)
Query: 133 VETSGENVPPAVNTFAEID----LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMAC 188
+ G ++P + TF ++D + L NI + PTP+Q AIP+ + GR+L+A
Sbjct: 13 IHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLAS 72
Query: 189 AQTGSGKTAAFCFPIISGIMREQYVQRP--RGSRTVYPLALILAPTRELSSQIHVEAKKF 246
A TGSGKT AF PI+ +++P +G R ALI++PTREL+SQIH E K
Sbjct: 73 APTGSGKTLAFSIPIL------MQLKQPANKGFR-----ALIISPTRELASQIHRELIKI 121
Query: 247 SYQTGVKVVVAYGGAPINQQLR-ELERGVDILVATPGRLVDLLERA--RVSLQMIRYLAL 303
S TG ++ + + A ++ + + DILV TP RL+ LL++ + L + +L +
Sbjct: 122 SEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181
Query: 304 DEADRMLD---MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFL 360
DE+D++ + GF Q+ I + +R+ M FSATF ++++ L N I +
Sbjct: 182 DESDKLFEDGKTGFRDQLASIF--LACTSHKVRRAM-FSATFAYDVEQWCKLNLDNVISV 238
Query: 361 AVG 363
++G
Sbjct: 239 SIG 241
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 139/303 (45%), Gaps = 21/303 (6%)
Query: 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 198
N V F + +L E L + + +P+ +Q+ AI I G D++A AQ+G+GKT
Sbjct: 15 NYDKVVYKFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGT 74
Query: 199 FCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAY 258
F + I + P AL LAPTREL+ QI ++ +KV
Sbjct: 75 FSIAALQRI----------DTSVKAPQALXLAPTRELALQIQKVVXALAFHXDIKVHACI 124
Query: 259 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQI 318
GG + L R I+V TPGR+ D ++R R I+ LDEAD L GF+ QI
Sbjct: 125 GGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKXFILDEADEXLSSGFKEQI 183
Query: 319 RKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEF 378
+I + PP Q +L SAT P ++ + + F N + + V + + + I Q
Sbjct: 184 YQI---FTLLPPTT-QVVLLSATXPNDVLEVTTKFXRNPVRILVKKDELTLEGIKQFYVN 239
Query: 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDR 438
V E + + + L+ + + QA ++F T++ + L L + F + I+ D
Sbjct: 240 VEEEEYKYECLTDLY----DSISVTQA--VIFCNTRRKVEELTTKLRNDKFTVSAIYSDL 293
Query: 439 TQQ 441
QQ
Sbjct: 294 PQQ 296
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 117/227 (51%), Gaps = 15/227 (6%)
Query: 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 198
N V+ F +++L E+L I + KP+ +Q+ AI I G D++A AQ+G+GKTA
Sbjct: 24 NWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTAT 83
Query: 199 FCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAY 258
F I+ + E + AL+LAPTREL+ QI G
Sbjct: 84 FAISILQQLEIEFKETQ----------ALVLAPTRELAQQIQKVILALGDYMGATCHACI 133
Query: 259 GGAPINQQLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQ 317
GG + ++++L+ I+V TPGR+ D+L R +S + I+ LDEAD ML GF+ Q
Sbjct: 134 GGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQ 193
Query: 318 IRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGR 364
I +I Q+++ Q +L SAT P ++ + F+ + I + V +
Sbjct: 194 IYEIFQKLNTSI----QVVLLSATMPTDVLEVTKKFMRDPIRILVKK 236
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 113/215 (52%), Gaps = 14/215 (6%)
Query: 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPI 203
+ F++ L + ++ +Y T +Q+ I +++ G+D++ A+TGSGKT AF P+
Sbjct: 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 83
Query: 204 ISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPI 263
+ + R Q+ + T LI++PTREL+ Q +K + GG +
Sbjct: 84 LEALYRLQW------TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDL 137
Query: 264 NQQLRELERGVDILVATPGRLVDLLERARVSLQM--IRYLALDEADRMLDMGFEPQIRKI 321
+ + ++ILV TPGRL+ ++ VS ++ L LDEADR+LDMGF + +
Sbjct: 138 KHEAERIN-NINILVCTPGRLLQHMDET-VSFHATDLQMLVLDEADRILDMGFADTMNAV 195
Query: 322 VQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN 356
++ + P RQT+LFSAT K ++ LA L N
Sbjct: 196 IENL----PKKRQTLLFSATQTKSVKDLARLSLKN 226
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
Query: 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 198
N V F +++L E L + + +P+ +Q+ AI I G D++A AQ+G+GKT
Sbjct: 8 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67
Query: 199 FCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAY 258
F + I + P AL+LAPTREL+ QI ++ +KV
Sbjct: 68 FSIAALQRI----------DTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACI 117
Query: 259 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQI 318
GG + L R I+V TPGR+ D ++R R I+ LDEAD ML GF+ QI
Sbjct: 118 GGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQI 176
Query: 319 RKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGR 364
+I + PP Q +L SAT P ++ + + F+ N + + V +
Sbjct: 177 YQI---FTLLPP-TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 107/218 (49%), Gaps = 15/218 (6%)
Query: 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 198
N V F +++L E L + + +P+ +Q+ AI I G D++A AQ+G+GKT
Sbjct: 15 NYQKVVYKFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 74
Query: 199 FCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAY 258
F + I + P AL+LAPTREL+ QI ++ +KV
Sbjct: 75 FSIAALQRI----------DTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACI 124
Query: 259 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQI 318
GG + L R I+V TPGR+ D ++R R I+ LDEAD ML GF+ QI
Sbjct: 125 GGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQI 183
Query: 319 RKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN 356
+I + PP Q +L SAT P ++ + + F+ N
Sbjct: 184 YQI---FTLLPP-TTQVVLLSATMPNDVLEVTTKFMRN 217
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 149/305 (48%), Gaps = 36/305 (11%)
Query: 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPI 203
+F E+ L L I K+ KP+ +Q A+P+ + R+++A +Q+G+GKTAAF +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 204 ISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQ---IHVEAKKFSYQTGVKVVVAYGG 260
++ + E P A+ LAP+REL+ Q + E KF+ T +V
Sbjct: 66 LTRVNPED----------ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVP--DS 113
Query: 261 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD-MGFEPQIR 319
N+Q+ ++V TPG ++DL+ R + LQ I+ LDEAD MLD G Q
Sbjct: 114 FEKNKQI-----NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCI 168
Query: 320 KIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ-RVEF 378
++ + + P Q +LFSATF +++ A + N L + + D I Q ++
Sbjct: 169 RVKRFL----PKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDC 224
Query: 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGD- 437
+E+DK L +L +++FV TKK A+ L L G + +HGD
Sbjct: 225 KNEADKFDVLTELYGVMTIGS-------SIIFVATKKTANVLYGKLKSEGHEVSILHGDL 277
Query: 438 RTQQR 442
+TQ+R
Sbjct: 278 QTQER 282
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 117/225 (52%), Gaps = 15/225 (6%)
Query: 134 ETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGS 193
+ G V + F + L L I C + P+ VQ IP +I G D++ A++G
Sbjct: 3 DVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGM 62
Query: 194 GKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS-YQTGV 252
GKTA F + Q ++ G +V L++ TREL+ QI E ++FS Y V
Sbjct: 63 GKTAVFVLATL------QQLEPVTGQVSV----LVMCHTRELAFQISKEYERFSKYMPNV 112
Query: 253 KVVVAYGGAPINQQLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD 311
KV V +GG I + L++ I+V TPGR++ L ++L+ I++ LDE D+ML+
Sbjct: 113 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 172
Query: 312 MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN 356
+ +R+ VQ++ P +Q M+FSAT KEI+ + F+ +
Sbjct: 173 ---QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQD 214
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 149/305 (48%), Gaps = 36/305 (11%)
Query: 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPI 203
+F E+ L L I K+ KP+ +Q A+P+ + R+++A +Q+G+GKTAAF +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 204 ISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQ---IHVEAKKFSYQTGVKVVVAYGG 260
++ + E P A+ LAP+REL+ Q + E KF+ T +V
Sbjct: 66 LTRVNPED----------ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVP--DS 113
Query: 261 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD-MGFEPQIR 319
N+Q+ ++V TPG ++DL+ R + LQ I+ LDEAD MLD G Q
Sbjct: 114 FEKNKQI-----NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCI 168
Query: 320 KIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ-RVEF 378
++ + + P Q +LFSATF +++ A + N L + + D I Q ++
Sbjct: 169 RVKRFL----PKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDC 224
Query: 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGD- 437
+E+DK L +L +++FV TKK A+ L L G + +HGD
Sbjct: 225 KNEADKFDVLTELYGLMTIGS-------SIIFVATKKTANVLYGKLKSEGHEVSILHGDL 277
Query: 438 RTQQR 442
+TQ+R
Sbjct: 278 QTQER 282
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 105/217 (48%), Gaps = 15/217 (6%)
Query: 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 198
N V++F +++L E+L I + P+ +Q+ AI I G D++A AQ+G+G TA
Sbjct: 9 NWNEIVDSFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTAT 68
Query: 199 FCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAY 258
F I+ I + + AL+LAPTREL+ QI G
Sbjct: 69 FAISILQQIELDLXATQ----------ALVLAPTRELAQQIQXVVMALGDYMGASCHACI 118
Query: 259 GGAPINQQLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQ 317
GG + +++ L+ I+V TPGR+ D+L R +S I LDEAD ML GF Q
Sbjct: 119 GGTNVRAEVQXLQMEAPHIIVGTPGRVFDMLNRRYLSPXYIXMFVLDEADEMLSRGFXDQ 178
Query: 318 IRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL 354
I I Q ++ Q +L SAT P ++ + F+
Sbjct: 179 IYDIFQXLN----SNTQVVLLSATMPSDVLEVTXXFM 211
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 148/312 (47%), Gaps = 24/312 (7%)
Query: 152 LGEALNLNIRRCKYVKPTPVQRHAIP--ISIGGRDLMACAQTGSGKTAAFCFPIISGIMR 209
L + ++ I R ++ TPVQ+ I +S D++A A+TG+GKT AF PI ++
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 87
Query: 210 EQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF-SYQTGVK---VVVAYGGAPINQ 265
++ A+I+APTR+L+ QI E KK G+K V GG
Sbjct: 88 TKF------DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA 141
Query: 266 QLRELERGV-DILVATPGRLVDLLER-ARVSLQMIRYLALDEADRMLDMGFEPQ---IRK 320
+ ++ + +I++ATPGRL+D+LE+ + + + Y LDEADR+L++GF I
Sbjct: 142 AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISG 201
Query: 321 IVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVE--- 377
I+ + + +T+LFSAT ++Q+LA++ + L + V + +R++
Sbjct: 202 ILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 261
Query: 378 FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWL---YMNGFPATTI 434
+ E S + H + ++F T K L L + P
Sbjct: 262 VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEF 321
Query: 435 HGDRTQ-QRTSI 445
HG TQ +RTS+
Sbjct: 322 HGKITQNKRTSL 333
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 148/312 (47%), Gaps = 24/312 (7%)
Query: 152 LGEALNLNIRRCKYVKPTPVQRHAIP--ISIGGRDLMACAQTGSGKTAAFCFPIISGIMR 209
L + ++ I R ++ TPVQ+ I +S D++A A+TG+GKT AF PI ++
Sbjct: 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 138
Query: 210 EQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF-SYQTGVK---VVVAYGGAPINQ 265
++ A+I+APTR+L+ QI E KK G+K V GG
Sbjct: 139 TKF------DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA 192
Query: 266 QLRELERGV-DILVATPGRLVDLLER-ARVSLQMIRYLALDEADRMLDMGFEPQ---IRK 320
+ ++ + +I++ATPGRL+D+LE+ + + + Y LDEADR+L++GF I
Sbjct: 193 AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISG 252
Query: 321 IVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVE--- 377
I+ + + +T+LFSAT ++Q+LA++ + L + V + +R++
Sbjct: 253 ILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 312
Query: 378 FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWL---YMNGFPATTI 434
+ E S + H + ++F T K L L + P
Sbjct: 313 VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEF 372
Query: 435 HGDRTQ-QRTSI 445
HG TQ +RTS+
Sbjct: 373 HGKITQNKRTSL 384
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 148/312 (47%), Gaps = 24/312 (7%)
Query: 152 LGEALNLNIRRCKYVKPTPVQRHAIP--ISIGGRDLMACAQTGSGKTAAFCFPIISGIMR 209
L + ++ I R ++ TPVQ+ I +S D++A A+TG+GKT AF PI
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIF----- 82
Query: 210 EQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF-SYQTGVK---VVVAYGGAPINQ 265
Q++ + A+I+APTR+L+ QI E KK G+K V GG
Sbjct: 83 -QHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA 141
Query: 266 QLRELERGV-DILVATPGRLVDLLER-ARVSLQMIRYLALDEADRMLDMGFEPQ---IRK 320
+ ++ + +I++ATPGRL+D+LE+ + + + Y LDEADR+L++GF I
Sbjct: 142 AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISG 201
Query: 321 IVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVE--- 377
I+ + + +T+LFSAT ++Q+LA++ + L + V + +R++
Sbjct: 202 ILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 261
Query: 378 FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWL---YMNGFPATTI 434
+ E S + H + ++F T K L L + P
Sbjct: 262 VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEF 321
Query: 435 HGDRTQ-QRTSI 445
HG TQ +RTS+
Sbjct: 322 HGKITQNKRTSL 333
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 103/202 (50%), Gaps = 25/202 (12%)
Query: 159 NIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 218
+R + +P+PVQ AIP+ G DL+ A++G+GKT F + ++ E +
Sbjct: 38 GLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQ--- 94
Query: 219 SRTVYPLALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDIL 277
LILAPTRE++ QIH + G++ V GG P++Q L++ I
Sbjct: 95 -------ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK-CHIA 146
Query: 278 VATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTM 336
V +PGR+ L+E ++ IR LDEAD++L+ G F+ QI I + P +Q +
Sbjct: 147 VGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSL----PASKQML 202
Query: 337 LFSATFPKEIQRLASDFLANYI 358
SAT+P +FLAN +
Sbjct: 203 AVSATYP--------EFLANAL 216
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 104/208 (50%), Gaps = 20/208 (9%)
Query: 160 IRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQY-VQRPRG 218
I+ ++ KPT +Q IP ++ G + +QTG+GKT A+ PI I E+ VQ
Sbjct: 19 IKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPIXEKIKPERAEVQ---- 74
Query: 219 SRTVYPLALILAPTRELSSQIHVEAKKFS-YQTGVKVVVA---YGGAPINQQLRELERGV 274
A+I APTREL++QI+ E K + + + +VA GG + L +L
Sbjct: 75 -------AVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKLNVQP 127
Query: 275 DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQ 334
I++ TPGR+ D + + + L +DEAD LD GF + +I + P Q
Sbjct: 128 HIVIGTPGRINDFIREQALDVHTAHILVVDEADLXLDXGFITDVDQIAARX----PKDLQ 183
Query: 335 TMLFSATFPKEIQRLASDFLANYIFLAV 362
++FSAT P++++ + N F+ V
Sbjct: 184 XLVFSATIPEKLKPFLKKYXENPTFVHV 211
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 58/76 (76%), Gaps = 6/76 (7%)
Query: 366 GSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLY 425
GS+++ I Q+V +V ESDKRS L+DLL+A GK +LTLVFVETKKGAD+LE +LY
Sbjct: 14 GSTSENITQKVVWVEESDKRSFLLDLLNAT------GKDSLTLVFVETKKGADSLEDFLY 67
Query: 426 MNGFPATTIHGDRTQQ 441
G+ T+IHGDR+Q+
Sbjct: 68 HEGYACTSIHGDRSQR 83
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 27/220 (12%)
Query: 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFC 200
+ +F E+ L L I K+ KP+ +Q A+P+ + R+++A +Q+G+GKTAAF
Sbjct: 20 SAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFS 79
Query: 201 FPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQ---IHVEAKKFSYQTGVKVVVA 257
+++ + E P A+ LAP+REL+ Q + E KF+ T +V
Sbjct: 80 LTMLTRVNPED----------ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVP- 128
Query: 258 YGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD-MGFEP 316
N+Q+ ++V TPG ++DL+ R + LQ I+ LDEAD MLD G
Sbjct: 129 -DSFEKNKQI-----NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGD 182
Query: 317 QIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN 356
Q ++ + + P Q +LFSATF +++ A + N
Sbjct: 183 QCIRVKRFL----PKDTQLVLFSATFADAVRQYAKKIVPN 218
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 132/277 (47%), Gaps = 41/277 (14%)
Query: 171 VQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALI 228
+Q A+P+ + R+++ +Q+G+GKTAAF ++S + + V +P+ A+
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRV--DASVPKPQ--------AIC 194
Query: 229 LAPTRELSSQIHVEAKKFSYQTGVKVVVAYG-------GAPINQQLRELERGVDILVATP 281
LAP+REL+ QI + T VK A+G GA I+ Q I++ TP
Sbjct: 195 LAPSRELARQIMDVVTEMGKYTEVKT--AFGIKDSVPKGAKIDAQ---------IVIGTP 243
Query: 282 GRLVDLLERARVSLQMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340
G ++DL++R ++ + I+ LDEAD MLD G Q +I + P Q +LFSA
Sbjct: 244 GTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLL----PRNTQIVLFSA 299
Query: 341 TFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGV 400
TF + +++ A F N + + S + I Q + + +++ L+ + G
Sbjct: 300 TFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIG- 358
Query: 401 HGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGD 437
+++F + K A+ + + +G + G+
Sbjct: 359 -----QSIIFCKKKDTAEEIARRMTADGHTVACLTGN 390
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 142/313 (45%), Gaps = 37/313 (11%)
Query: 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFC 200
+V +F E+ L L + + +P+ +Q +A+P+ + ++L+A +Q+G+GKTAAF
Sbjct: 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 149
Query: 201 FPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI-HVEAKKFSYQTGVKVVVAYG 259
++S + P YP L L+PT EL+ Q V + + +K+ A
Sbjct: 150 LAMLSQV-------EPANK---YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR 199
Query: 260 GAPINQQLRELERGV----DILVATPGRLVDLLERAR-VSLQMIRYLALDEADRML-DMG 313
G +LERG I++ TPG ++D + + + + I+ LDEAD M+ G
Sbjct: 200 G-------NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 252
Query: 314 FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIV 373
+ Q +I + + P Q +LFSATF + + A + + + + R + D I
Sbjct: 253 HQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIK 308
Query: 374 QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATT 433
Q D++ + L+ + A ++F T+K A L L G
Sbjct: 309 QYYVLCSSRDEKFQALCNLYGAIT------IAQAMIFCHTRKTASWLAAELSKEGHQVAL 362
Query: 434 IHGD-RTQQRTSI 445
+ G+ +QR ++
Sbjct: 363 LSGEMMVEQRAAV 375
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 142/313 (45%), Gaps = 37/313 (11%)
Query: 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFC 200
+V +F E+ L L + + +P+ +Q +A+P+ + ++L+A +Q+G+GKTAAF
Sbjct: 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82
Query: 201 FPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI-HVEAKKFSYQTGVKVVVAYG 259
++S + P YP L L+PT EL+ Q V + + +K+ A
Sbjct: 83 LAMLSQV-------EPANK---YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR 132
Query: 260 GAPINQQLRELERGV----DILVATPGRLVDLLERAR-VSLQMIRYLALDEADRML-DMG 313
G +LERG I++ TPG ++D + + + + I+ LDEAD M+ G
Sbjct: 133 G-------NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 185
Query: 314 FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIV 373
+ Q +I + + P Q +LFSATF + + A + + + + R + D I
Sbjct: 186 HQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIK 241
Query: 374 QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATT 433
Q D++ + L+ + A ++F T+K A L L G
Sbjct: 242 QYYVLCSSRDEKFQALCNLYGAIT------IAQAMIFCHTRKTASWLAAELSKEGHQVAL 295
Query: 434 IHGD-RTQQRTSI 445
+ G+ +QR ++
Sbjct: 296 LSGEMMVEQRAAV 308
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 142/313 (45%), Gaps = 37/313 (11%)
Query: 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFC 200
+V +F E+ L L + + +P+ +Q +A+P+ + ++L+A +Q+G+GKTAAF
Sbjct: 39 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 98
Query: 201 FPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI-HVEAKKFSYQTGVKVVVAYG 259
++S + P YP L L+PT EL+ Q V + + +K+ A
Sbjct: 99 LAMLSQV-------EPANK---YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR 148
Query: 260 GAPINQQLRELERGV----DILVATPGRLVDLLERAR-VSLQMIRYLALDEADRML-DMG 313
G +LERG I++ TPG ++D + + + + I+ LDEAD M+ G
Sbjct: 149 G-------NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 201
Query: 314 FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIV 373
+ Q +I + + P Q +LFSATF + + A + + + + R + D I
Sbjct: 202 HQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIK 257
Query: 374 QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATT 433
Q D++ + L+ + A ++F T+K A L L G
Sbjct: 258 QYYVLCSSRDEKFQALCNLYGAIT------IAQAMIFCHTRKTASWLAAELSKEGHQVAL 311
Query: 434 IHGD-RTQQRTSI 445
+ G+ +QR ++
Sbjct: 312 LSGEMMVEQRAAV 324
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 142/313 (45%), Gaps = 37/313 (11%)
Query: 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFC 200
+V +F E+ L L + + +P+ +Q +A+P+ + ++L+A +Q+G+GKTAAF
Sbjct: 60 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 119
Query: 201 FPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI-HVEAKKFSYQTGVKVVVAYG 259
++S + P YP L L+PT EL+ Q V + + +K+ A
Sbjct: 120 LAMLSQV-------EPANK---YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR 169
Query: 260 GAPINQQLRELERGV----DILVATPGRLVDLLERAR-VSLQMIRYLALDEADRML-DMG 313
G +LERG I++ TPG ++D + + + + I+ LDEAD M+ G
Sbjct: 170 G-------NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 222
Query: 314 FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIV 373
+ Q +I + + P Q +LFSATF + + A + + + + R + D I
Sbjct: 223 HQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIK 278
Query: 374 QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATT 433
Q D++ + L+ + A ++F T+K A L L G
Sbjct: 279 QYYVLCSSRDEKFQALCNLYGAIT------IAQAMIFCHTRKTASWLAAELSKEGHQVAL 332
Query: 434 IHGD-RTQQRTSI 445
+ G+ +QR ++
Sbjct: 333 LSGEMMVEQRAAV 345
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 30/217 (13%)
Query: 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFC 200
+V +F E+ L L + + +P+ +Q +A+P+ + ++L+A +Q+G+GKTAAF
Sbjct: 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 149
Query: 201 FPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI-HVEAKKFSYQTGVKVVVAYG 259
++S + P YP L L+PT EL+ Q V + + +K+ A
Sbjct: 150 LAMLSQV-------EPANK---YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR 199
Query: 260 GAPINQQLRELERGV----DILVATPGRLVDLLERAR-VSLQMIRYLALDEADRML-DMG 313
G +LERG I++ TPG ++D + + + + I+ LDEAD M+ G
Sbjct: 200 G-------NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 252
Query: 314 FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLA 350
+ Q +I + + P Q +LFSATF + + A
Sbjct: 253 HQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFA 285
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 30/217 (13%)
Query: 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFC 200
+V +F E+ L L + + +P+ +Q +A+P+ + ++L+A +Q+G+GKTAAF
Sbjct: 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82
Query: 201 FPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI-HVEAKKFSYQTGVKVVVAYG 259
++S + P YP L L+PT EL+ Q V + + +K+ A
Sbjct: 83 LAMLSQV-------EPANK---YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR 132
Query: 260 GAPINQQLRELERGV----DILVATPGRLVDLLERAR-VSLQMIRYLALDEADRML-DMG 313
G +LERG I++ TPG ++D + + + + I+ LDEAD M+ G
Sbjct: 133 G-------NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 185
Query: 314 FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLA 350
+ Q +I + + P Q +LFSATF + + A
Sbjct: 186 HQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFA 218
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 365 VGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWL 424
+G+++ ++Q VE+V E K +L++ L L+F E K DA+ +L
Sbjct: 23 MGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPP--------VLIFAEKKADVDAIHEYL 74
Query: 425 YMNGFPATTIHGDRTQQR 442
+ G A IHG + Q+
Sbjct: 75 LLKGVEAVAIHGGKDQEE 92
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 175 AIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR-PRGSRTVYPLALILAPTR 233
A+P ++ G++ + CA TG GKT +S ++ E ++++ P+G + P
Sbjct: 13 ALP-AMKGKNTIICAPTGCGKT------FVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 65
Query: 234 ELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV 293
E + + K+ + G +V G N + ++ DI++ TP LV+ L++ +
Sbjct: 66 EQNKSVF---SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 122
Query: 294 -SLQMIRYLALDEA 306
SL + + DE
Sbjct: 123 PSLSIFTLMIFDEC 136
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 175 AIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR-PRGSRTVYPLALILAPTR 233
A+P ++ G++ + CA TG GKT +S ++ E ++++ P+G + P
Sbjct: 22 ALP-AMKGKNTIICAPTGCGKT------FVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 74
Query: 234 ELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV 293
E + + K+ + G +V G N + ++ DI++ TP LV+ L++ +
Sbjct: 75 EQNKSVF---SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 131
Query: 294 -SLQMIRYLALDEA 306
SL + + DE
Sbjct: 132 PSLSIFTLMIFDEC 145
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 175 AIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR-PRGSRTVYPLALILAPTR 233
A+P ++ G++ + CA TG GKT +S ++ E ++++ P+G + P
Sbjct: 21 ALP-AMKGKNTIICAPTGCGKT------FVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 73
Query: 234 ELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV 293
E Q V +K F + G +V G N + ++ DI++ TP LV+ L++ +
Sbjct: 74 E--QQKSVFSKYFE-RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 130
Query: 294 -SLQMIRYLALDEA 306
SL + + DE
Sbjct: 131 PSLSIFTLMIFDEC 144
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR-PRGSRTVYPLALILAPTRELSS 237
+I G++ + CA TGSGKT +S ++ E + Q P G + P E
Sbjct: 260 AINGKNALICAPTGSGKT------FVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQK 313
Query: 238 QI---HVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV- 293
+ H E + +S Q G+ G N + ++ DI+V TP LV+ E +
Sbjct: 314 NVFKHHFERQGYSVQ-GIS-----GENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLT 367
Query: 294 SLQMIRYLALDEA 306
SL + + DE
Sbjct: 368 SLSIFTLMIFDEC 380
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR-PRGSRTVYPLALILAPTRELSS 237
+I G++ + CA TGSGKT +S ++ E + Q P G + P E
Sbjct: 19 AINGKNALICAPTGSGKT------FVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQK 72
Query: 238 QI---HVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV- 293
+ H E + +S Q G+ G N + ++ DI+V TP LV+ E +
Sbjct: 73 NVFKHHFERQGYSVQ-GIS-----GENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLT 126
Query: 294 SLQMIRYLALDEA 306
SL + + DE
Sbjct: 127 SLSIFTLMIFDEC 139
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR-PRGSRTVYPLALILAPTRELSS 237
+I G++ + CA TGSGKT +S ++ E + Q P G + P E
Sbjct: 260 AINGKNALICAPTGSGKT------FVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQK 313
Query: 238 QI---HVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV- 293
+ H E + +S Q G+ G N + ++ DI+V TP LV+ E +
Sbjct: 314 NVFKHHFERQGYSVQ-GIS-----GENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLT 367
Query: 294 SLQMIRYLALDEA 306
SL + + DE
Sbjct: 368 SLSIFTLMIFDEC 380
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 15/167 (8%)
Query: 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALI-LAPTRELSSQIHVE 242
+L+ CA TG+GKT ++ I + + G+ V +I +AP R L ++
Sbjct: 97 NLLLCAPTGAGKTNVALMCMLREIGKHINMD---GTINVDDFKIIYIAPMRSLVQEMVGS 153
Query: 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA---RVSLQMIR 299
K G+ V G +Q +E I+V TP + D++ R R Q++R
Sbjct: 154 FGKRLATYGITVAELTGD---HQLCKEEISATQIIVCTPEKW-DIITRKGGERTYTQLVR 209
Query: 300 YLALDEADRMLDMG---FEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343
+ LDE + D E + + ++ ++M +R L SAT P
Sbjct: 210 LIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGL-SATLP 255
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 15/167 (8%)
Query: 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALI-LAPTRELSSQIHVE 242
+L+ CA TG+GKT ++ I + + G+ V +I +AP R L ++
Sbjct: 97 NLLLCAPTGAGKTNVALMCMLREIGKHINMD---GTINVDDFKIIYIAPMRSLVQEMVGS 153
Query: 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA---RVSLQMIR 299
K G+ V G +Q +E I+V TP + D++ R R Q++R
Sbjct: 154 FGKRLATYGITVAELTGD---HQLCKEEISATQIIVCTPEKW-DIITRKGGERTYTQLVR 209
Query: 300 YLALDEADRMLDMG---FEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343
+ LDE + D E + + ++ ++M +R L SAT P
Sbjct: 210 LIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGL-SATLP 255
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 17/153 (11%)
Query: 160 IRRCKYVKPTPVQRHAIPISI-GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 218
I++ K P Q A+ + G L+ + TGSGKT IIS +++ G
Sbjct: 23 IKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-------NG 75
Query: 219 SRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILV 278
+ +Y + P R L+++ ++ K + G KV + G + + DI++
Sbjct: 76 GKAIY-----VTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDAWL---KNYDIII 126
Query: 279 ATPGRLVDLLERARVSLQMIRYLALDEADRMLD 311
T +L L L + Y LDE + D
Sbjct: 127 TTYEKLDSLWRHRPEWLNEVNYFVLDELHYLND 159
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 191 TGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQT 250
TG GKT + +M +Y G + L+LAPT+ L Q H E+ + +
Sbjct: 32 TGLGKT-------LIAMMIAEYRLTKYGGKV-----LMLAPTKPLVLQ-HAESFRRLFNL 78
Query: 251 GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR 308
+ +VA G ++ + ++VATP + + L R+SL+ + + DEA R
Sbjct: 79 PPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHR 136
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 185 LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244
+ A QTGSGKT ++ ++ ++ PR + L + L +HV
Sbjct: 87 VFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKL---IDENDLLDCLVHVSYL 143
Query: 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQM 297
+ Y+ + ++ G A + QLRE ERG +L V+ L+ L+M
Sbjct: 144 EV-YKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEM 195
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 185 LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244
+ A QTGSGKT ++ ++ ++ PR + L + L +HV
Sbjct: 87 VFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKL---IDENDLLDCLVHVSYL 143
Query: 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQM 297
+ Y+ + ++ G A + QLRE ERG +L V+ L+ L+M
Sbjct: 144 EV-YKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEM 195
>pdb|1CF2|P Chain P, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|R Chain R, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|O Chain O, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|Q Chain Q, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
Length = 337
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLA 302
A + Q +KV+ P + L++G D+ VA P R V L E+A + +
Sbjct: 17 ADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPER-VKLFEKAGIEVAGTVDDM 75
Query: 303 LDEADRMLD 311
LDEAD ++D
Sbjct: 76 LDEADIVID 84
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 407 TLVFVETKKGADALEHWLYMNGFPATTIHGD-RTQQR 442
+++FV TKK A+ L L G + +HGD +TQ+R
Sbjct: 39 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQER 75
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 407 TLVFVETKKGADALEHWLYMNGFPATTIHGD-RTQQR 442
+++FV TKK A+ L L G + +HGD +TQ+R
Sbjct: 38 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQER 74
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 407 TLVFVETKKGADALEHWLYMNGFPATTIHGD-RTQQR 442
+++FV TKK A+ L L G + +HGD +TQ+R
Sbjct: 40 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQER 76
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLA 226
+P + + + +G + TG+GKT IS ++ + V +P
Sbjct: 42 QPQAIAKLVDGLRLGVKHQTLLGATGTGKTFT-----ISNVIAQ--VNKP---------T 85
Query: 227 LILAPTRELSSQIHVEAKKFSYQTGVKVVVAY 258
L++A + L+ Q+H E K+F V+ V+Y
Sbjct: 86 LVIAHNKTLAGQLHSELKEFFPHNAVEYFVSY 117
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 11/127 (8%)
Query: 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR-PRGSRTVYPLALILAPTRELSSQIH 240
G++ + CA TG GKT +S ++ E ++++ P G + P E + +
Sbjct: 19 GKNTIICAPTGCGKT------FVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVF 72
Query: 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIR 299
++ + G + G + ++ + DI++ TP LV+ L + SL +
Sbjct: 73 ---SRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFT 129
Query: 300 YLALDEA 306
DE
Sbjct: 130 LXIFDEC 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,139,581
Number of Sequences: 62578
Number of extensions: 476291
Number of successful extensions: 1255
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1044
Number of HSP's gapped (non-prelim): 86
length of query: 448
length of database: 14,973,337
effective HSP length: 102
effective length of query: 346
effective length of database: 8,590,381
effective search space: 2972271826
effective search space used: 2972271826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)