Query 013189
Match_columns 448
No_of_seqs 357 out of 2595
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 01:18:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0335 ATP-dependent RNA heli 100.0 2.1E-64 4.7E-69 498.1 26.8 333 115-447 44-380 (482)
2 KOG0331 ATP-dependent RNA heli 100.0 4.3E-61 9.3E-66 482.3 30.9 292 145-447 91-384 (519)
3 KOG0330 ATP-dependent RNA heli 100.0 8.9E-58 1.9E-62 432.5 22.6 284 143-447 59-343 (476)
4 PTZ00110 helicase; Provisional 100.0 4.6E-55 9.9E-60 458.3 39.0 298 136-447 121-420 (545)
5 COG0513 SrmB Superfamily II DN 100.0 2E-55 4.4E-60 457.0 33.2 284 145-447 29-316 (513)
6 KOG0333 U5 snRNP-like RNA heli 100.0 7.5E-55 1.6E-59 425.6 27.6 311 129-447 229-560 (673)
7 KOG0328 Predicted ATP-dependen 100.0 3.5E-55 7.5E-60 399.1 22.7 285 142-447 24-309 (400)
8 KOG0338 ATP-dependent RNA heli 100.0 7.5E-56 1.6E-60 431.1 19.4 286 144-447 180-469 (691)
9 KOG0339 ATP-dependent RNA heli 100.0 3E-54 6.5E-59 419.4 26.2 301 132-447 210-511 (731)
10 KOG0341 DEAD-box protein abstr 100.0 2.8E-54 6.1E-59 407.8 13.6 299 135-447 160-464 (610)
11 KOG0336 ATP-dependent RNA heli 100.0 5.6E-53 1.2E-57 401.4 21.4 297 136-447 210-508 (629)
12 KOG0342 ATP-dependent RNA heli 100.0 1.8E-51 3.8E-56 400.3 26.2 288 143-446 80-372 (543)
13 PLN00206 DEAD-box ATP-dependen 100.0 9.8E-50 2.1E-54 416.7 33.9 303 132-447 108-411 (518)
14 KOG0343 RNA Helicase [RNA proc 100.0 9.3E-51 2E-55 398.7 23.7 287 143-447 67-358 (758)
15 PRK04837 ATP-dependent RNA hel 100.0 2.3E-49 5.1E-54 405.5 33.3 291 145-447 8-298 (423)
16 PRK10590 ATP-dependent RNA hel 100.0 7E-49 1.5E-53 405.1 32.6 287 146-447 2-288 (456)
17 PRK04537 ATP-dependent RNA hel 100.0 7.1E-49 1.5E-53 413.0 33.1 291 145-447 9-300 (572)
18 PRK11634 ATP-dependent RNA hel 100.0 8.4E-49 1.8E-53 415.0 33.0 283 144-447 5-288 (629)
19 PRK11776 ATP-dependent RNA hel 100.0 1.3E-48 2.8E-53 404.2 32.3 281 145-447 4-285 (460)
20 KOG0345 ATP-dependent RNA heli 100.0 3.9E-49 8.5E-54 381.5 26.3 286 146-447 5-300 (567)
21 KOG0326 ATP-dependent RNA heli 100.0 2E-50 4.4E-55 373.4 14.5 281 145-447 85-365 (459)
22 KOG0348 ATP-dependent RNA heli 100.0 5E-49 1.1E-53 385.4 22.5 299 142-447 133-490 (708)
23 KOG0340 ATP-dependent RNA heli 100.0 5.1E-49 1.1E-53 369.0 21.1 286 144-447 6-297 (442)
24 KOG0334 RNA helicase [RNA proc 100.0 7.6E-49 1.7E-53 412.2 22.9 300 133-447 353-656 (997)
25 PRK11192 ATP-dependent RNA hel 100.0 9.1E-47 2E-51 387.9 33.1 285 146-447 2-288 (434)
26 KOG0346 RNA helicase [RNA proc 100.0 5.4E-48 1.2E-52 370.6 22.0 289 145-447 19-311 (569)
27 PRK01297 ATP-dependent RNA hel 100.0 8.7E-45 1.9E-49 376.8 36.2 293 143-447 85-378 (475)
28 KOG0327 Translation initiation 100.0 5.2E-46 1.1E-50 353.4 19.4 281 144-447 25-306 (397)
29 KOG0347 RNA helicase [RNA proc 100.0 1.3E-46 2.8E-51 369.5 15.4 298 142-447 178-506 (731)
30 KOG0337 ATP-dependent RNA heli 100.0 3.4E-45 7.3E-50 349.9 18.7 283 144-445 20-302 (529)
31 PTZ00424 helicase 45; Provisio 100.0 8.5E-43 1.8E-47 355.0 32.9 284 143-447 26-310 (401)
32 KOG0332 ATP-dependent RNA heli 100.0 3.5E-44 7.6E-49 338.3 20.4 287 137-447 82-373 (477)
33 KOG4284 DEAD box protein [Tran 100.0 8E-44 1.7E-48 354.8 20.2 290 136-447 16-315 (980)
34 KOG0329 ATP-dependent RNA heli 100.0 2.7E-41 5.9E-46 304.2 14.9 265 133-418 30-297 (387)
35 KOG0344 ATP-dependent RNA heli 100.0 1.6E-39 3.4E-44 323.7 18.2 302 131-447 118-431 (593)
36 TIGR03817 DECH_helic helicase/ 100.0 2E-38 4.3E-43 342.1 28.1 271 151-447 20-322 (742)
37 TIGR02621 cas3_GSU0051 CRISPR- 100.0 4.6E-37 1E-41 326.5 28.8 257 163-444 12-310 (844)
38 KOG0350 DEAD-box ATP-dependent 100.0 1.5E-35 3.3E-40 289.0 21.2 287 145-447 127-476 (620)
39 PLN03137 ATP-dependent DNA hel 100.0 2.9E-34 6.2E-39 309.5 28.2 265 150-447 442-723 (1195)
40 PRK00254 ski2-like helicase; P 100.0 2.3E-34 4.9E-39 312.2 27.0 274 146-447 2-314 (720)
41 PRK13767 ATP-dependent helicas 100.0 2.8E-34 6E-39 315.6 27.7 285 152-447 18-333 (876)
42 TIGR00614 recQ_fam ATP-depende 100.0 7.1E-34 1.5E-38 294.4 27.6 254 162-447 6-269 (470)
43 PRK02362 ski2-like helicase; P 100.0 3E-34 6.6E-39 312.0 25.3 274 146-447 2-322 (737)
44 PRK09401 reverse gyrase; Revie 100.0 8.4E-34 1.8E-38 316.1 28.9 247 163-438 77-365 (1176)
45 TIGR01389 recQ ATP-dependent D 100.0 6.2E-33 1.3E-37 295.3 27.8 252 162-447 8-267 (591)
46 PRK11057 ATP-dependent DNA hel 100.0 1.2E-32 2.6E-37 292.8 28.5 257 157-447 14-279 (607)
47 cd00268 DEADc DEAD-box helicas 100.0 6.7E-33 1.5E-37 255.8 23.2 202 147-360 1-202 (203)
48 COG1201 Lhr Lhr-like helicases 100.0 2.3E-32 5E-37 289.3 25.5 279 152-446 8-296 (814)
49 TIGR01054 rgy reverse gyrase. 100.0 3E-32 6.5E-37 304.1 27.7 257 154-440 65-365 (1171)
50 PRK14701 reverse gyrase; Provi 100.0 4.8E-32 1E-36 308.0 28.2 254 155-437 67-366 (1638)
51 PRK01172 ski2-like helicase; P 100.0 4.5E-32 9.8E-37 292.8 25.5 272 146-447 2-304 (674)
52 PRK10689 transcription-repair 100.0 1.7E-30 3.7E-35 289.2 29.3 255 154-447 588-854 (1147)
53 TIGR00580 mfd transcription-re 100.0 3.2E-30 7E-35 281.3 29.3 257 152-447 436-705 (926)
54 KOG0349 Putative DEAD-box RNA 100.0 5.3E-31 1.1E-35 253.0 14.7 225 223-447 286-551 (725)
55 PRK09751 putative ATP-dependen 100.0 8.2E-30 1.8E-34 285.4 25.2 251 187-447 1-320 (1490)
56 PRK10917 ATP-dependent DNA hel 100.0 3.2E-28 7E-33 261.7 29.1 251 159-447 254-524 (681)
57 PHA02653 RNA helicase NPH-II; 100.0 1.8E-28 4E-33 259.4 25.7 246 170-443 167-436 (675)
58 TIGR00643 recG ATP-dependent D 100.0 7.6E-28 1.6E-32 257.1 28.3 259 154-447 223-501 (630)
59 COG0514 RecQ Superfamily II DN 100.0 1.1E-28 2.3E-33 253.0 20.5 252 162-446 12-272 (590)
60 COG1202 Superfamily II helicas 100.0 2E-28 4.3E-33 242.8 21.0 281 146-446 195-482 (830)
61 PF00270 DEAD: DEAD/DEAH box h 100.0 3.1E-28 6.6E-33 217.7 15.8 168 169-349 1-169 (169)
62 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.7E-27 1E-31 254.1 27.0 240 174-447 9-255 (819)
63 PRK11664 ATP-dependent RNA hel 100.0 5.5E-27 1.2E-31 254.1 25.7 240 174-447 12-258 (812)
64 TIGR03158 cas3_cyano CRISPR-as 100.0 2.9E-26 6.3E-31 229.1 27.0 256 171-447 1-317 (357)
65 TIGR01587 cas3_core CRISPR-ass 100.0 3.4E-27 7.3E-32 236.8 20.3 237 184-446 1-266 (358)
66 PHA02558 uvsW UvsW helicase; P 99.9 1.1E-26 2.3E-31 242.3 22.3 248 165-447 112-387 (501)
67 COG1205 Distinct helicase fami 99.9 3.5E-26 7.5E-31 248.3 26.9 277 152-447 55-357 (851)
68 PRK12898 secA preprotein trans 99.9 2.4E-25 5.2E-30 232.5 24.9 256 166-445 102-514 (656)
69 COG1204 Superfamily II helicas 99.9 3.8E-25 8.2E-30 237.2 20.4 253 150-425 14-274 (766)
70 KOG0952 DNA/RNA helicase MER3/ 99.9 1.2E-24 2.6E-29 228.4 20.9 262 162-437 105-386 (1230)
71 KOG0351 ATP-dependent DNA heli 99.9 1E-24 2.2E-29 235.6 20.7 262 154-446 251-527 (941)
72 KOG0352 ATP-dependent DNA heli 99.9 3.2E-25 6.9E-30 213.2 13.8 268 155-446 6-297 (641)
73 PRK09200 preprotein translocas 99.9 3.1E-23 6.7E-28 221.1 25.1 130 164-310 76-212 (790)
74 PRK13766 Hef nuclease; Provisi 99.9 1.9E-22 4.2E-27 221.6 29.3 161 164-342 12-172 (773)
75 TIGR03714 secA2 accessory Sec 99.9 6E-23 1.3E-27 217.0 23.9 129 167-310 70-208 (762)
76 TIGR00963 secA preprotein tran 99.9 7.1E-23 1.5E-27 215.3 21.9 129 166-311 55-190 (745)
77 PRK11131 ATP-dependent RNA hel 99.9 1.2E-22 2.6E-27 224.6 24.0 236 174-447 81-332 (1294)
78 PRK13104 secA preprotein trans 99.9 2E-21 4.4E-26 207.0 24.2 127 167-310 82-215 (896)
79 PRK12899 secA preprotein trans 99.9 2.1E-22 4.6E-27 214.1 14.6 148 148-310 65-228 (970)
80 KOG0353 ATP-dependent DNA heli 99.9 1.8E-21 3.8E-26 185.0 18.3 268 148-444 74-357 (695)
81 COG1111 MPH1 ERCC4-like helica 99.9 2.5E-20 5.5E-25 184.1 25.4 177 164-358 12-191 (542)
82 PRK09694 helicase Cas3; Provis 99.9 1.3E-20 2.7E-25 204.5 24.8 261 165-445 284-604 (878)
83 smart00487 DEXDc DEAD-like hel 99.9 1.1E-20 2.4E-25 171.7 19.4 187 163-364 4-192 (201)
84 PRK05580 primosome assembly pr 99.9 4.1E-20 9E-25 198.5 27.0 249 167-447 144-473 (679)
85 PRK12904 preprotein translocas 99.9 2.5E-20 5.5E-25 198.5 23.0 128 166-310 80-214 (830)
86 TIGR01967 DEAH_box_HrpA ATP-de 99.9 1.2E-19 2.6E-24 201.6 26.8 250 164-447 61-325 (1283)
87 KOG0354 DEAD-box like helicase 99.8 4.6E-19 9.9E-24 184.6 21.7 176 152-345 47-224 (746)
88 KOG0951 RNA helicase BRR2, DEA 99.8 3.1E-19 6.8E-24 190.2 19.6 252 164-425 306-567 (1674)
89 TIGR00603 rad25 DNA repair hel 99.8 5.6E-19 1.2E-23 187.0 19.2 241 166-447 254-534 (732)
90 COG4581 Superfamily II RNA hel 99.8 1.8E-18 3.9E-23 186.6 19.3 175 161-360 114-290 (1041)
91 COG1061 SSL2 DNA or RNA helica 99.8 3.8E-18 8.3E-23 175.0 18.1 244 165-447 34-325 (442)
92 PRK13107 preprotein translocas 99.8 1.9E-17 4.1E-22 176.4 22.1 127 167-310 82-215 (908)
93 TIGR00595 priA primosomal prot 99.8 1.7E-17 3.7E-22 172.4 21.3 226 186-443 1-299 (505)
94 KOG0947 Cytoplasmic exosomal R 99.8 3.8E-17 8.1E-22 170.8 19.3 152 167-346 297-448 (1248)
95 KOG0948 Nuclear exosomal RNA h 99.7 2.3E-17 5E-22 168.6 13.8 233 167-430 129-409 (1041)
96 COG1200 RecG RecG-like helicas 99.7 8.2E-16 1.8E-20 158.3 24.2 260 151-447 246-526 (677)
97 cd00046 DEXDc DEAD-like helica 99.7 3.7E-16 8.1E-21 133.6 15.0 144 183-342 1-144 (144)
98 PRK11448 hsdR type I restricti 99.7 1.3E-15 2.8E-20 170.1 21.8 161 166-345 412-597 (1123)
99 COG1110 Reverse gyrase [DNA re 99.7 2.3E-15 5E-20 159.3 21.5 251 157-437 72-371 (1187)
100 COG1203 CRISPR-associated heli 99.7 6E-16 1.3E-20 167.9 17.4 263 168-447 196-483 (733)
101 COG4098 comFA Superfamily II D 99.7 3E-14 6.5E-19 134.9 22.3 232 167-438 97-341 (441)
102 PRK04914 ATP-dependent helicas 99.6 2.1E-14 4.5E-19 157.3 21.3 158 167-342 152-315 (956)
103 KOG0950 DNA polymerase theta/e 99.6 5.8E-15 1.3E-19 155.5 14.2 182 156-355 212-398 (1008)
104 PRK12906 secA preprotein trans 99.6 7.7E-14 1.7E-18 148.7 21.4 128 166-310 79-213 (796)
105 TIGR01407 dinG_rel DnaQ family 99.6 2.9E-13 6.2E-18 149.9 25.3 96 152-261 231-333 (850)
106 COG1197 Mfd Transcription-repa 99.6 3.8E-13 8.3E-18 146.0 23.9 258 152-447 579-848 (1139)
107 COG1643 HrpA HrpA-like helicas 99.5 4.4E-13 9.5E-18 144.3 22.0 241 174-447 57-306 (845)
108 PF04851 ResIII: Type III rest 99.5 3.6E-14 7.9E-19 127.9 11.3 152 167-343 3-183 (184)
109 KOG0920 ATP-dependent RNA heli 99.5 5.1E-13 1.1E-17 143.4 21.8 251 169-446 175-462 (924)
110 TIGR00348 hsdR type I site-spe 99.5 2.4E-12 5.1E-17 138.6 22.1 150 168-343 239-403 (667)
111 COG4096 HsdR Type I site-speci 99.5 1.1E-12 2.5E-17 137.2 18.0 247 167-443 165-470 (875)
112 PLN03142 Probable chromatin-re 99.5 4.7E-12 1E-16 139.6 23.4 154 167-342 169-329 (1033)
113 KOG0922 DEAH-box RNA helicase 99.4 2.7E-11 5.9E-16 124.2 23.2 240 173-447 57-309 (674)
114 PRK12326 preprotein translocas 99.4 1.4E-11 3.1E-16 129.2 21.7 128 166-310 77-211 (764)
115 COG0556 UvrB Helicase subunit 99.4 9.8E-12 2.1E-16 124.1 19.2 104 332-447 386-489 (663)
116 PF06862 DUF1253: Protein of u 99.4 2.3E-11 5E-16 122.3 22.1 226 216-444 30-340 (442)
117 KOG0951 RNA helicase BRR2, DEA 99.3 8.6E-12 1.9E-16 134.3 11.7 232 165-424 1141-1379(1674)
118 KOG2340 Uncharacterized conser 99.3 1.6E-11 3.4E-16 122.3 11.5 266 166-435 215-583 (698)
119 KOG1123 RNA polymerase II tran 99.3 1.2E-11 2.6E-16 122.3 10.6 242 166-447 301-581 (776)
120 TIGR03117 cas_csf4 CRISPR-asso 99.3 2.9E-11 6.4E-16 127.4 13.6 72 178-260 12-86 (636)
121 PRK13103 secA preprotein trans 99.3 1.2E-10 2.6E-15 125.0 17.9 128 166-310 81-215 (913)
122 PRK07246 bifunctional ATP-depe 99.3 3.8E-11 8.3E-16 131.7 13.3 131 164-310 243-449 (820)
123 CHL00122 secA preprotein trans 99.2 3.3E-10 7.1E-15 121.2 19.1 127 167-310 76-209 (870)
124 KOG0949 Predicted helicase, DE 99.2 4.6E-11 1E-15 126.1 11.1 166 167-351 511-682 (1330)
125 KOG0923 mRNA splicing factor A 99.2 5.5E-10 1.2E-14 114.0 16.6 246 169-447 267-525 (902)
126 KOG0926 DEAH-box RNA helicase 99.2 6.1E-10 1.3E-14 115.7 16.7 221 177-427 266-504 (1172)
127 PRK12902 secA preprotein trans 99.2 2E-09 4.2E-14 115.2 19.8 127 167-310 85-218 (939)
128 COG1198 PriA Primosomal protei 99.2 5.5E-10 1.2E-14 118.9 15.7 222 167-420 198-436 (730)
129 KOG0385 Chromatin remodeling c 99.1 5.4E-09 1.2E-13 108.6 19.1 254 167-447 167-530 (971)
130 smart00489 DEXDc3 DEAD-like he 99.1 1.6E-09 3.6E-14 105.2 13.6 73 167-246 8-84 (289)
131 smart00488 DEXDc2 DEAD-like he 99.1 1.6E-09 3.6E-14 105.2 13.6 73 167-246 8-84 (289)
132 KOG0924 mRNA splicing factor A 99.1 4.8E-09 1E-13 107.5 17.3 236 178-446 367-615 (1042)
133 PF07652 Flavi_DEAD: Flaviviru 99.1 7.5E-10 1.6E-14 94.1 9.7 138 181-346 3-140 (148)
134 PRK12903 secA preprotein trans 99.0 1.4E-08 3E-13 108.5 20.1 128 166-310 77-211 (925)
135 KOG0925 mRNA splicing factor A 99.0 3.1E-08 6.7E-13 98.3 19.8 260 144-435 24-293 (699)
136 TIGR00631 uvrb excinuclease AB 99.0 1.1E-08 2.4E-13 109.6 17.3 62 381-447 424-485 (655)
137 PF00176 SNF2_N: SNF2 family N 99.0 5.4E-09 1.2E-13 101.8 11.9 145 182-342 25-172 (299)
138 PRK08074 bifunctional ATP-depe 98.9 1.7E-08 3.6E-13 112.9 14.8 81 166-259 256-344 (928)
139 KOG0387 Transcription-coupled 98.8 2.8E-07 6.1E-12 96.4 18.9 131 167-312 205-352 (923)
140 PRK12900 secA preprotein trans 98.8 2.1E-07 4.6E-12 100.9 16.8 127 167-310 138-271 (1025)
141 PF02399 Herpes_ori_bp: Origin 98.7 3.1E-07 6.8E-12 97.7 17.2 228 184-442 51-320 (824)
142 TIGR02562 cas3_yersinia CRISPR 98.7 6.2E-07 1.3E-11 97.9 19.1 168 169-351 410-643 (1110)
143 PRK05298 excinuclease ABC subu 98.7 8.3E-07 1.8E-11 95.7 19.8 61 382-447 429-489 (652)
144 KOG4150 Predicted ATP-dependen 98.7 1.4E-07 3E-12 95.2 12.4 271 158-446 277-575 (1034)
145 KOG0952 DNA/RNA helicase MER3/ 98.7 2.6E-09 5.6E-14 114.2 -0.3 148 165-327 925-1075(1230)
146 PF07517 SecA_DEAD: SecA DEAD- 98.7 1.5E-07 3.2E-12 89.6 11.2 132 162-310 72-210 (266)
147 KOG0390 DNA repair protein, SN 98.6 1E-05 2.2E-10 86.6 24.1 160 167-342 238-414 (776)
148 PRK14873 primosome assembly pr 98.6 2.9E-07 6.3E-12 98.6 12.3 140 188-351 166-312 (665)
149 KOG0384 Chromodomain-helicase 98.5 1.3E-06 2.7E-11 95.5 14.3 162 166-350 369-544 (1373)
150 TIGR00604 rad3 DNA repair heli 98.5 6E-07 1.3E-11 98.0 12.1 74 163-246 6-83 (705)
151 PRK11747 dinG ATP-dependent DN 98.5 1.3E-06 2.7E-11 95.0 13.1 63 166-240 24-95 (697)
152 COG1199 DinG Rad3-related DNA 98.4 1E-06 2.2E-11 95.7 11.4 74 161-246 9-86 (654)
153 KOG0392 SNF2 family DNA-depend 98.4 6.4E-06 1.4E-10 89.9 16.4 146 169-325 977-1126(1549)
154 KOG1000 Chromatin remodeling p 98.3 0.00011 2.5E-09 73.7 20.1 252 167-446 198-534 (689)
155 PRK15483 type III restriction- 98.2 4.7E-06 1E-10 91.2 10.3 144 182-344 59-240 (986)
156 COG4889 Predicted helicase [Ge 98.2 5.6E-06 1.2E-10 87.6 9.9 139 156-310 150-317 (1518)
157 PF13604 AAA_30: AAA domain; P 98.1 6.7E-06 1.5E-10 75.3 7.9 124 167-341 1-130 (196)
158 PF13086 AAA_11: AAA domain; P 98.1 1.5E-05 3.3E-10 74.2 10.2 74 167-245 1-75 (236)
159 KOG0389 SNF2 family DNA-depend 98.1 2.2E-05 4.7E-10 82.6 10.3 163 168-351 400-572 (941)
160 PF02562 PhoH: PhoH-like prote 98.0 2.5E-05 5.3E-10 71.6 8.9 145 167-341 4-155 (205)
161 COG0610 Type I site-specific r 97.9 0.00014 3.1E-09 81.5 13.0 136 184-342 275-413 (962)
162 KOG1002 Nucleotide excision re 97.9 5.2E-05 1.1E-09 75.9 8.4 125 168-310 185-329 (791)
163 PF14617 CMS1: U3-containing 9 97.8 5.5E-05 1.2E-09 71.3 8.2 86 221-307 124-211 (252)
164 PF13872 AAA_34: P-loop contai 97.8 0.00013 2.7E-09 70.1 10.6 174 149-350 25-228 (303)
165 KOG0953 Mitochondrial RNA heli 97.8 0.00015 3.2E-09 73.9 10.3 203 183-445 192-398 (700)
166 PF09848 DUF2075: Uncharacteri 97.8 0.00078 1.7E-08 67.5 15.6 108 184-324 3-117 (352)
167 TIGR01447 recD exodeoxyribonuc 97.7 0.00034 7.5E-09 74.4 12.8 143 169-341 147-295 (586)
168 PRK10875 recD exonuclease V su 97.7 0.00025 5.4E-09 75.6 11.6 142 169-341 154-301 (615)
169 KOG0391 SNF2 family DNA-depend 97.7 0.00015 3.3E-09 79.1 9.8 153 168-342 616-775 (1958)
170 KOG1132 Helicase of the DEAD s 97.7 0.00032 7E-09 75.0 11.2 141 167-310 21-260 (945)
171 PRK10536 hypothetical protein; 97.7 0.0009 1.9E-08 63.2 12.9 60 164-234 56-115 (262)
172 KOG1802 RNA helicase nonsense 97.6 0.00037 8.1E-09 72.3 10.9 85 158-258 401-485 (935)
173 COG3587 Restriction endonuclea 97.6 0.00011 2.5E-09 78.1 7.4 144 183-347 75-247 (985)
174 PF12340 DUF3638: Protein of u 97.6 0.001 2.2E-08 61.6 12.8 150 147-311 5-186 (229)
175 KOG1803 DNA helicase [Replicat 97.6 0.00021 4.5E-09 73.7 8.9 65 167-244 185-250 (649)
176 PRK13889 conjugal transfer rel 97.6 0.00076 1.6E-08 75.4 13.6 125 166-341 345-470 (988)
177 KOG4439 RNA polymerase II tran 97.6 7.9E-05 1.7E-09 77.6 5.0 136 169-309 327-475 (901)
178 COG0653 SecA Preprotein transl 97.5 0.002 4.4E-08 69.6 15.0 127 169-310 80-213 (822)
179 cd00079 HELICc Helicase superf 97.5 0.00066 1.4E-08 57.0 9.1 60 383-447 12-71 (131)
180 TIGR00376 DNA helicase, putati 97.5 0.00099 2.2E-08 71.8 12.0 67 166-245 156-223 (637)
181 TIGR01448 recD_rel helicase, p 97.4 0.0013 2.9E-08 71.9 12.7 131 166-341 322-452 (720)
182 KOG0386 Chromatin remodeling c 97.4 0.0007 1.5E-08 73.3 9.7 128 167-310 394-528 (1157)
183 KOG0921 Dosage compensation co 97.3 0.00036 7.9E-09 74.6 6.6 143 178-343 389-536 (1282)
184 PRK12901 secA preprotein trans 97.2 0.00051 1.1E-08 75.5 6.2 127 168-310 170-303 (1112)
185 PF13401 AAA_22: AAA domain; P 97.1 0.0014 3.1E-08 55.3 7.2 19 181-199 3-21 (131)
186 PF05970 PIF1: PIF1-like helic 97.1 0.0017 3.8E-08 65.3 8.2 60 167-239 1-66 (364)
187 PF13245 AAA_19: Part of AAA d 97.1 0.0014 3.1E-08 50.1 5.8 60 175-243 2-62 (76)
188 PRK12723 flagellar biosynthesi 97.1 0.045 9.8E-07 55.3 18.2 162 183-395 175-338 (388)
189 PRK06526 transposase; Provisio 97.0 0.0018 3.9E-08 61.7 7.5 23 178-200 94-116 (254)
190 PRK14722 flhF flagellar biosyn 97.0 0.0066 1.4E-07 60.8 11.4 133 181-354 136-270 (374)
191 PRK08181 transposase; Validate 97.0 0.0049 1.1E-07 59.2 10.0 49 295-347 165-214 (269)
192 TIGR02768 TraA_Ti Ti-type conj 97.0 0.0082 1.8E-07 66.0 12.6 123 166-339 351-474 (744)
193 PRK13826 Dtr system oriT relax 96.9 0.1 2.2E-06 59.2 20.7 125 166-341 380-505 (1102)
194 PRK06893 DNA replication initi 96.8 0.0034 7.3E-08 59.0 7.4 48 295-345 89-137 (229)
195 KOG1805 DNA replication helica 96.8 0.006 1.3E-07 66.3 9.7 137 150-311 656-810 (1100)
196 TIGR02760 TraI_TIGR conjugativ 96.8 0.077 1.7E-06 64.2 20.1 230 167-445 429-678 (1960)
197 PF00580 UvrD-helicase: UvrD/R 96.8 0.0026 5.7E-08 62.0 6.5 104 168-288 1-104 (315)
198 PRK07764 DNA polymerase III su 96.8 0.0063 1.4E-07 67.2 10.0 45 296-346 119-163 (824)
199 PRK04296 thymidine kinase; Pro 96.8 0.002 4.3E-08 58.7 5.1 40 279-325 63-102 (190)
200 PRK05642 DNA replication initi 96.7 0.0044 9.6E-08 58.4 7.4 45 295-343 95-140 (234)
201 PRK06835 DNA replication prote 96.7 0.02 4.4E-07 56.6 12.2 51 295-348 244-295 (329)
202 cd00009 AAA The AAA+ (ATPases 96.7 0.011 2.5E-07 49.9 9.3 18 182-199 19-36 (151)
203 PRK06921 hypothetical protein; 96.6 0.026 5.7E-07 54.2 12.0 27 181-208 116-142 (266)
204 PRK14974 cell division protein 96.6 0.044 9.5E-07 54.3 13.7 55 296-354 221-276 (336)
205 PRK08727 hypothetical protein; 96.5 0.012 2.5E-07 55.5 8.3 50 295-347 91-141 (233)
206 COG1875 NYN ribonuclease and A 96.5 0.01 2.2E-07 58.2 7.7 145 163-338 224-384 (436)
207 PRK08116 hypothetical protein; 96.4 0.035 7.6E-07 53.4 11.1 50 295-348 176-227 (268)
208 PRK05703 flhF flagellar biosyn 96.4 0.2 4.2E-06 51.5 17.1 130 182-353 221-354 (424)
209 PRK07952 DNA replication prote 96.4 0.036 7.7E-07 52.5 10.8 51 295-348 160-211 (244)
210 COG0553 HepA Superfamily II DN 96.3 0.0088 1.9E-07 67.1 7.7 133 166-309 337-484 (866)
211 PRK08084 DNA replication initi 96.3 0.012 2.6E-07 55.5 7.4 44 297-343 97-141 (235)
212 PF00448 SRP54: SRP54-type pro 96.3 0.012 2.5E-07 53.9 7.0 84 296-395 82-166 (196)
213 PRK14964 DNA polymerase III su 96.3 0.044 9.5E-07 57.0 11.9 45 295-345 114-158 (491)
214 cd01120 RecA-like_NTPases RecA 96.3 0.011 2.5E-07 51.3 6.6 17 185-201 2-18 (165)
215 PF00308 Bac_DnaA: Bacterial d 96.3 0.012 2.6E-07 54.8 6.9 50 295-347 95-145 (219)
216 PRK12377 putative replication 96.2 0.033 7.2E-07 52.8 9.9 50 295-347 161-211 (248)
217 smart00382 AAA ATPases associa 96.2 0.0078 1.7E-07 50.4 5.2 18 182-199 2-19 (148)
218 TIGR02881 spore_V_K stage V sp 96.2 0.03 6.4E-07 53.6 9.5 19 182-200 42-60 (261)
219 PRK11889 flhF flagellar biosyn 96.2 0.26 5.6E-06 49.7 16.2 101 278-395 302-403 (436)
220 PF05621 TniB: Bacterial TniB 96.2 0.037 8.1E-07 53.5 10.0 99 183-313 62-161 (302)
221 COG1419 FlhF Flagellar GTP-bin 96.2 0.3 6.6E-06 49.1 16.6 133 181-353 202-335 (407)
222 KOG0388 SNF2 family DNA-depend 96.2 0.017 3.8E-07 60.7 8.1 157 170-348 570-740 (1185)
223 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.019 4E-07 53.5 7.8 20 181-200 37-56 (226)
224 PRK07003 DNA polymerase III su 96.1 0.025 5.4E-07 61.1 9.1 17 185-201 41-57 (830)
225 PF01695 IstB_IS21: IstB-like 96.1 0.0094 2E-07 53.6 5.1 30 179-209 44-73 (178)
226 PRK12422 chromosomal replicati 96.1 0.031 6.8E-07 57.7 9.5 53 295-350 200-253 (445)
227 PRK14086 dnaA chromosomal repl 96.0 0.031 6.8E-07 59.3 9.4 50 295-347 375-425 (617)
228 PRK14721 flhF flagellar biosyn 96.0 0.15 3.3E-06 52.0 14.1 133 181-353 190-323 (420)
229 PRK11331 5-methylcytosine-spec 96.0 0.02 4.4E-07 58.5 7.5 33 168-200 180-212 (459)
230 PRK00411 cdc6 cell division co 95.9 0.039 8.4E-07 56.0 9.6 17 183-199 56-72 (394)
231 PF05127 Helicase_RecD: Helica 95.9 0.0023 5E-08 57.2 0.5 123 186-342 1-123 (177)
232 PRK12323 DNA polymerase III su 95.9 0.12 2.6E-06 55.2 13.0 41 295-340 122-162 (700)
233 COG3421 Uncharacterized protei 95.9 0.0071 1.5E-07 62.6 3.6 146 187-345 2-168 (812)
234 TIGR00362 DnaA chromosomal rep 95.9 0.042 9.1E-07 56.2 9.4 49 297-348 199-248 (405)
235 PRK14087 dnaA chromosomal repl 95.8 0.04 8.7E-07 57.0 9.2 49 295-346 204-253 (450)
236 PRK14952 DNA polymerase III su 95.8 0.14 2.9E-06 54.7 13.3 45 295-345 116-160 (584)
237 COG1444 Predicted P-loop ATPas 95.8 0.052 1.1E-06 58.6 10.1 147 160-342 207-356 (758)
238 PF03354 Terminase_1: Phage Te 95.8 0.022 4.7E-07 59.6 7.2 126 170-311 1-137 (477)
239 PRK14088 dnaA chromosomal repl 95.8 0.048 1E-06 56.3 9.3 52 297-351 194-246 (440)
240 PRK09111 DNA polymerase III su 95.7 0.1 2.2E-06 55.9 11.8 40 295-339 130-169 (598)
241 PRK00149 dnaA chromosomal repl 95.7 0.066 1.4E-06 55.6 10.3 50 296-348 210-260 (450)
242 TIGR00596 rad1 DNA repair prot 95.7 0.037 8.1E-07 61.0 8.7 76 274-353 8-89 (814)
243 PRK14949 DNA polymerase III su 95.7 0.082 1.8E-06 58.3 10.9 45 296-346 118-162 (944)
244 COG1484 DnaC DNA replication p 95.6 0.039 8.3E-07 52.6 7.6 51 181-245 104-154 (254)
245 PRK12727 flagellar biosynthesi 95.6 0.44 9.6E-06 49.9 15.6 64 281-353 416-481 (559)
246 PRK07994 DNA polymerase III su 95.6 0.17 3.7E-06 54.4 13.1 43 296-344 118-160 (647)
247 KOG1131 RNA polymerase II tran 95.6 0.068 1.5E-06 54.7 9.3 74 164-246 13-90 (755)
248 PRK05707 DNA polymerase III su 95.6 0.1 2.2E-06 51.7 10.5 34 168-201 4-41 (328)
249 cd01124 KaiC KaiC is a circadi 95.6 0.057 1.2E-06 48.5 8.1 49 185-247 2-50 (187)
250 PRK14959 DNA polymerase III su 95.5 0.12 2.5E-06 55.3 11.3 47 295-347 117-163 (624)
251 PRK06731 flhF flagellar biosyn 95.5 1 2.2E-05 43.4 16.8 161 181-395 74-237 (270)
252 PHA02533 17 large terminase pr 95.5 0.07 1.5E-06 56.3 9.7 150 167-342 59-210 (534)
253 PRK14712 conjugal transfer nic 95.5 0.081 1.8E-06 62.0 10.9 66 166-240 834-901 (1623)
254 PHA02544 44 clamp loader, smal 95.5 0.1 2.2E-06 51.3 10.2 40 145-199 18-60 (316)
255 KOG0989 Replication factor C, 95.5 0.048 1E-06 52.4 7.3 56 293-353 125-183 (346)
256 TIGR01547 phage_term_2 phage t 95.5 0.047 1E-06 55.6 8.0 138 184-344 3-142 (396)
257 PRK09183 transposase/IS protei 95.5 0.092 2E-06 50.2 9.5 22 179-200 99-120 (259)
258 PRK08691 DNA polymerase III su 95.4 0.064 1.4E-06 57.7 9.0 18 184-201 40-57 (709)
259 PRK08903 DnaA regulatory inact 95.4 0.079 1.7E-06 49.4 8.8 44 297-344 90-133 (227)
260 PF00004 AAA: ATPase family as 95.4 0.088 1.9E-06 44.0 8.3 15 185-199 1-15 (132)
261 PRK12402 replication factor C 95.4 0.1 2.2E-06 51.7 10.0 17 184-200 38-54 (337)
262 PRK06995 flhF flagellar biosyn 95.4 0.059 1.3E-06 55.9 8.5 19 182-200 256-274 (484)
263 PRK14958 DNA polymerase III su 95.4 0.11 2.3E-06 54.7 10.4 39 296-339 118-156 (509)
264 PTZ00146 fibrillarin; Provisio 95.3 0.98 2.1E-05 43.7 15.8 19 184-202 134-152 (293)
265 CHL00181 cbbX CbbX; Provisiona 95.3 0.13 2.9E-06 49.9 10.1 21 181-201 58-78 (287)
266 PRK05563 DNA polymerase III su 95.3 0.17 3.6E-06 54.0 11.6 45 295-345 117-161 (559)
267 PRK13709 conjugal transfer nic 95.3 0.19 4E-06 59.8 12.8 66 166-240 966-1033(1747)
268 PHA03368 DNA packaging termina 95.3 0.11 2.3E-06 55.3 9.8 137 180-344 252-392 (738)
269 cd01122 GP4d_helicase GP4d_hel 95.2 0.031 6.7E-07 53.7 5.5 27 179-205 27-53 (271)
270 PRK14956 DNA polymerase III su 95.2 0.11 2.4E-06 53.6 9.7 17 185-201 43-59 (484)
271 PRK14955 DNA polymerase III su 95.2 0.38 8.2E-06 49.0 13.6 41 295-341 125-165 (397)
272 PRK14723 flhF flagellar biosyn 95.2 0.24 5.3E-06 54.1 12.6 68 279-353 249-317 (767)
273 PRK14951 DNA polymerase III su 95.2 0.44 9.4E-06 51.2 14.3 45 295-345 122-166 (618)
274 COG1474 CDC6 Cdc6-related prot 95.2 0.3 6.6E-06 49.1 12.5 50 295-348 121-170 (366)
275 PRK14960 DNA polymerase III su 95.1 0.069 1.5E-06 57.1 8.1 18 184-201 39-56 (702)
276 PRK14950 DNA polymerase III su 95.1 0.19 4.2E-06 53.9 11.6 41 295-341 118-158 (585)
277 PF13173 AAA_14: AAA domain 95.1 0.21 4.6E-06 42.0 9.7 38 297-341 61-98 (128)
278 PRK06645 DNA polymerase III su 95.0 0.56 1.2E-05 49.2 14.3 43 295-343 126-168 (507)
279 TIGR02928 orc1/cdc6 family rep 95.0 0.13 2.9E-06 51.5 9.5 17 183-199 41-57 (365)
280 PRK14954 DNA polymerase III su 95.0 0.25 5.5E-06 53.0 11.8 40 295-339 125-164 (620)
281 PRK14957 DNA polymerase III su 94.9 0.36 7.8E-06 51.1 12.7 40 295-339 117-156 (546)
282 PRK14961 DNA polymerase III su 94.9 0.16 3.4E-06 51.2 9.7 39 295-338 117-155 (363)
283 PTZ00112 origin recognition co 94.9 0.31 6.8E-06 53.7 12.2 28 296-324 868-895 (1164)
284 KOG0741 AAA+-type ATPase [Post 94.9 0.32 6.9E-06 50.2 11.6 144 150-348 494-655 (744)
285 PHA03333 putative ATPase subun 94.8 0.55 1.2E-05 50.4 13.6 144 168-342 170-332 (752)
286 PRK14969 DNA polymerase III su 94.8 0.19 4.2E-06 53.1 10.5 40 295-339 117-156 (527)
287 TIGR02760 TraI_TIGR conjugativ 94.8 0.16 3.5E-06 61.6 10.9 63 166-240 1018-1085(1960)
288 PRK14965 DNA polymerase III su 94.7 0.67 1.4E-05 49.6 14.4 45 295-345 117-161 (576)
289 PHA00729 NTP-binding motif con 94.7 0.29 6.2E-06 45.6 10.1 75 274-352 59-138 (226)
290 PRK00771 signal recognition pa 94.7 0.22 4.7E-06 51.2 10.2 18 183-200 96-113 (437)
291 PRK08769 DNA polymerase III su 94.7 0.29 6.3E-06 48.2 10.7 36 165-200 2-44 (319)
292 COG4962 CpaF Flp pilus assembl 94.7 0.047 1E-06 53.5 5.0 62 163-238 153-215 (355)
293 PRK12724 flagellar biosynthesi 94.6 1.5 3.2E-05 44.8 15.5 57 296-353 298-356 (432)
294 COG2805 PilT Tfp pilus assembl 94.5 0.091 2E-06 50.5 6.4 52 139-210 100-152 (353)
295 TIGR03877 thermo_KaiC_1 KaiC d 94.5 0.12 2.6E-06 48.7 7.3 54 181-248 20-73 (237)
296 PRK14962 DNA polymerase III su 94.5 0.29 6.3E-06 51.0 10.6 44 295-344 115-158 (472)
297 TIGR02880 cbbX_cfxQ probable R 94.5 0.18 4E-06 48.9 8.6 20 181-200 57-76 (284)
298 PRK12726 flagellar biosynthesi 94.4 1.7 3.7E-05 43.8 15.3 19 182-200 206-224 (407)
299 PRK11054 helD DNA helicase IV; 94.4 0.14 3E-06 55.8 8.3 72 166-248 195-266 (684)
300 TIGR03881 KaiC_arch_4 KaiC dom 94.4 0.3 6.5E-06 45.5 9.7 53 181-247 19-71 (229)
301 PRK12899 secA preprotein trans 94.2 0.51 1.1E-05 52.4 12.2 103 334-446 505-608 (970)
302 PRK05973 replicative DNA helic 94.2 0.13 2.8E-06 48.4 6.7 85 149-247 22-115 (237)
303 TIGR02785 addA_Gpos recombinat 94.2 0.1 2.2E-06 60.9 7.2 123 167-308 1-126 (1232)
304 KOG0742 AAA+-type ATPase [Post 94.0 0.092 2E-06 52.4 5.4 104 183-342 385-493 (630)
305 KOG1015 Transcription regulato 94.0 0.47 1E-05 52.0 11.0 144 182-342 696-859 (1567)
306 PRK08939 primosomal protein Dn 94.0 0.28 6.1E-06 48.1 8.9 26 182-208 156-181 (306)
307 TIGR00064 ftsY signal recognit 93.9 0.51 1.1E-05 45.4 10.4 59 296-354 153-214 (272)
308 PRK14948 DNA polymerase III su 93.9 1.5 3.2E-05 47.4 14.7 30 295-328 119-148 (620)
309 TIGR00580 mfd transcription-re 93.8 0.53 1.1E-05 53.1 11.7 79 223-309 660-742 (926)
310 PRK08533 flagellar accessory p 93.8 0.59 1.3E-05 43.8 10.4 54 180-247 22-75 (230)
311 PRK13894 conjugal transfer ATP 93.8 0.12 2.6E-06 50.9 5.9 66 158-236 125-191 (319)
312 KOG0745 Putative ATP-dependent 93.7 0.056 1.2E-06 54.3 3.3 25 182-208 226-250 (564)
313 PF06745 KaiC: KaiC; InterPro 93.6 0.21 4.6E-06 46.5 7.0 54 181-247 18-71 (226)
314 PRK10689 transcription-repair 93.6 0.72 1.6E-05 53.3 12.4 91 223-325 809-903 (1147)
315 PRK06067 flagellar accessory p 93.5 0.37 8.1E-06 45.1 8.6 53 181-247 24-76 (234)
316 PRK10919 ATP-dependent DNA hel 93.5 0.15 3.2E-06 55.7 6.5 69 167-247 2-71 (672)
317 cd01126 TraG_VirD4 The TraG/Tr 93.5 0.096 2.1E-06 53.1 4.9 48 184-246 1-48 (384)
318 KOG0921 Dosage compensation co 93.4 0.25 5.4E-06 53.8 7.7 8 29-36 1190-1197(1282)
319 PRK06871 DNA polymerase III su 93.3 1 2.2E-05 44.5 11.4 41 295-340 105-145 (325)
320 TIGR01425 SRP54_euk signal rec 93.3 1.5 3.2E-05 45.0 12.9 85 184-284 102-194 (429)
321 COG4626 Phage terminase-like p 93.3 0.43 9.3E-06 49.7 9.0 150 167-340 61-223 (546)
322 cd03239 ABC_SMC_head The struc 93.3 0.11 2.3E-06 46.8 4.1 43 295-340 114-156 (178)
323 COG1435 Tdk Thymidine kinase [ 93.2 0.39 8.4E-06 43.4 7.6 103 184-324 6-108 (201)
324 PRK13833 conjugal transfer pro 93.2 0.19 4.2E-06 49.5 6.2 58 168-236 129-187 (323)
325 TIGR01074 rep ATP-dependent DN 93.2 0.17 3.8E-06 55.2 6.5 69 168-247 2-70 (664)
326 PF05496 RuvB_N: Holliday junc 93.1 0.16 3.5E-06 47.1 5.2 16 184-199 52-67 (233)
327 PF05918 API5: Apoptosis inhib 93.1 0.026 5.7E-07 59.0 0.0 7 4-10 460-466 (556)
328 PRK11823 DNA repair protein Ra 93.1 0.36 7.8E-06 50.0 8.3 53 181-247 79-131 (446)
329 cd01121 Sms Sms (bacterial rad 93.1 0.2 4.4E-06 50.5 6.2 105 181-324 81-191 (372)
330 PLN03025 replication factor C 93.1 0.5 1.1E-05 46.6 9.0 18 183-200 35-52 (319)
331 KOG1001 Helicase-like transcri 93.1 0.24 5.1E-06 53.6 7.1 113 185-312 155-269 (674)
332 cd00984 DnaB_C DnaB helicase C 93.0 0.35 7.6E-06 45.4 7.6 125 181-325 12-155 (242)
333 KOG0344 ATP-dependent RNA heli 93.0 4.2 9E-05 42.6 15.5 136 187-347 362-501 (593)
334 TIGR03499 FlhF flagellar biosy 92.9 0.14 3E-06 49.7 4.7 19 182-200 194-212 (282)
335 TIGR01075 uvrD DNA helicase II 92.9 0.23 5E-06 54.7 6.9 72 166-248 3-74 (715)
336 PF02534 T4SS-DNA_transf: Type 92.9 0.15 3.2E-06 53.2 5.2 50 183-247 45-94 (469)
337 TIGR00678 holB DNA polymerase 92.9 0.31 6.8E-06 43.9 6.8 39 295-338 94-132 (188)
338 PTZ00454 26S protease regulato 92.8 0.27 5.9E-06 50.0 6.8 54 143-199 140-196 (398)
339 PRK13342 recombination factor 92.8 0.6 1.3E-05 47.9 9.4 17 184-200 38-54 (413)
340 KOG0991 Replication factor C, 92.8 0.22 4.7E-06 46.2 5.4 30 295-325 111-140 (333)
341 PRK05416 glmZ(sRNA)-inactivati 92.8 1.2 2.5E-05 43.4 10.8 27 413-440 259-285 (288)
342 COG3973 Superfamily I DNA and 92.8 0.5 1.1E-05 49.6 8.5 93 149-248 186-285 (747)
343 PRK06964 DNA polymerase III su 92.7 1 2.2E-05 44.9 10.6 41 295-340 130-170 (342)
344 PRK07940 DNA polymerase III su 92.7 0.33 7.2E-06 49.3 7.2 47 295-347 115-161 (394)
345 PRK05986 cob(I)alamin adenolsy 92.7 1.2 2.5E-05 40.4 9.9 54 295-352 113-168 (191)
346 PRK14971 DNA polymerase III su 92.7 0.97 2.1E-05 48.7 11.1 42 295-342 119-160 (614)
347 PRK13341 recombination factor 92.6 0.63 1.4E-05 51.1 9.7 18 183-200 53-70 (725)
348 PF07728 AAA_5: AAA domain (dy 92.6 0.029 6.3E-07 47.9 -0.4 16 184-199 1-16 (139)
349 PF05876 Terminase_GpA: Phage 92.6 0.13 2.9E-06 54.6 4.5 125 167-311 16-148 (557)
350 cd00561 CobA_CobO_BtuR ATP:cor 92.6 0.87 1.9E-05 40.0 8.8 53 295-351 93-147 (159)
351 PRK14953 DNA polymerase III su 92.6 0.85 1.8E-05 47.8 10.3 41 295-341 117-157 (486)
352 PRK14963 DNA polymerase III su 92.5 0.84 1.8E-05 48.0 10.2 30 295-328 114-143 (504)
353 TIGR03015 pepcterm_ATPase puta 92.5 3.5 7.6E-05 39.2 13.8 34 167-200 23-61 (269)
354 TIGR02868 CydC thiol reductant 92.4 0.17 3.7E-06 53.6 5.1 31 295-325 486-516 (529)
355 PF03668 ATP_bind_2: P-loop AT 92.4 1.5 3.3E-05 42.2 10.9 243 185-440 4-283 (284)
356 PHA03372 DNA packaging termina 92.4 1.3 2.7E-05 46.9 11.0 130 181-342 201-337 (668)
357 TIGR00643 recG ATP-dependent D 92.4 2.3 5.1E-05 46.1 13.8 79 223-309 448-538 (630)
358 TIGR01241 FtsH_fam ATP-depende 92.3 0.24 5.3E-06 52.0 6.0 17 183-199 89-105 (495)
359 PRK06647 DNA polymerase III su 92.3 0.83 1.8E-05 48.7 9.9 43 295-343 117-159 (563)
360 PRK11773 uvrD DNA-dependent he 92.3 0.32 6.8E-06 53.7 7.0 72 166-248 8-79 (721)
361 PF13177 DNA_pol3_delta2: DNA 92.3 0.38 8.2E-06 42.5 6.3 44 296-345 101-144 (162)
362 PRK13897 type IV secretion sys 92.3 0.23 4.9E-06 53.2 5.6 49 183-246 159-207 (606)
363 PTZ00146 fibrillarin; Provisio 92.2 0.31 6.7E-06 47.2 5.9 33 164-199 106-138 (293)
364 PRK08451 DNA polymerase III su 92.2 0.86 1.9E-05 48.1 9.7 40 295-339 115-154 (535)
365 PRK05896 DNA polymerase III su 92.2 1.2 2.7E-05 47.5 10.8 18 184-201 40-57 (605)
366 PHA02244 ATPase-like protein 92.1 1.1 2.4E-05 44.9 9.9 23 177-199 114-136 (383)
367 PRK04195 replication factor C 92.1 0.77 1.7E-05 48.1 9.4 18 182-199 39-56 (482)
368 cd03115 SRP The signal recogni 92.1 1.6 3.5E-05 38.6 10.2 55 296-354 81-136 (173)
369 KOG0298 DEAD box-containing he 92.1 0.41 8.9E-06 54.0 7.4 153 181-342 373-550 (1394)
370 TIGR02782 TrbB_P P-type conjug 92.0 0.35 7.5E-06 47.3 6.2 58 168-236 117-175 (299)
371 PF03969 AFG1_ATPase: AFG1-lik 92.0 2.6 5.7E-05 42.3 12.6 110 182-346 62-172 (362)
372 COG2256 MGS1 ATPase related to 92.0 0.86 1.9E-05 45.7 8.8 18 183-200 49-66 (436)
373 COG1132 MdlB ABC-type multidru 92.0 0.3 6.5E-06 52.3 6.3 31 295-325 481-511 (567)
374 COG3972 Superfamily I DNA and 92.0 0.42 9.1E-06 48.9 6.7 152 156-325 152-318 (660)
375 PRK04537 ATP-dependent RNA hel 92.0 1.1 2.3E-05 48.1 10.4 73 224-306 258-334 (572)
376 KOG0333 U5 snRNP-like RNA heli 91.9 0.61 1.3E-05 48.0 7.8 70 223-302 517-590 (673)
377 PRK06305 DNA polymerase III su 91.9 2.5 5.3E-05 43.9 12.7 38 296-338 120-157 (451)
378 KOG0738 AAA+-type ATPase [Post 91.8 0.42 9.1E-06 47.6 6.4 69 297-365 304-384 (491)
379 COG0470 HolB ATPase involved i 91.8 0.68 1.5E-05 45.4 8.2 19 182-200 23-42 (325)
380 CHL00176 ftsH cell division pr 91.8 0.95 2.1E-05 48.9 9.7 18 182-199 216-233 (638)
381 PRK12901 secA preprotein trans 91.8 1.4 3E-05 49.5 10.9 99 335-440 566-664 (1112)
382 PRK06904 replicative DNA helic 91.7 0.74 1.6E-05 48.0 8.5 149 182-346 221-387 (472)
383 PRK09112 DNA polymerase III su 91.6 2.2 4.8E-05 42.7 11.5 40 295-339 139-178 (351)
384 PRK09376 rho transcription ter 91.5 0.81 1.8E-05 46.2 8.2 31 168-198 152-185 (416)
385 PRK03992 proteasome-activating 91.4 0.44 9.5E-06 48.4 6.4 17 183-199 166-182 (389)
386 PF03796 DnaB_C: DnaB-like hel 91.4 0.79 1.7E-05 43.7 7.9 142 182-341 19-179 (259)
387 TIGR00959 ffh signal recogniti 91.4 1.9 4.2E-05 44.3 11.0 17 184-200 101-117 (428)
388 PRK04328 hypothetical protein; 91.3 0.95 2.1E-05 42.9 8.3 54 181-248 22-75 (249)
389 TIGR00767 rho transcription te 91.2 0.56 1.2E-05 47.4 6.7 30 169-198 152-184 (415)
390 PRK11034 clpA ATP-dependent Cl 91.2 0.69 1.5E-05 51.0 8.0 19 182-200 207-225 (758)
391 TIGR01650 PD_CobS cobaltochela 91.2 0.99 2.2E-05 44.4 8.3 22 178-199 60-81 (327)
392 TIGR00631 uvrb excinuclease AB 91.1 4 8.6E-05 44.4 13.7 120 222-353 441-564 (655)
393 TIGR01073 pcrA ATP-dependent D 91.1 0.45 9.8E-06 52.5 6.7 72 166-248 3-74 (726)
394 KOG0733 Nuclear AAA ATPase (VC 91.1 1.4 3E-05 46.6 9.5 51 296-347 603-660 (802)
395 PRK08699 DNA polymerase III su 91.1 1.3 2.9E-05 43.7 9.3 33 169-201 3-40 (325)
396 TIGR00635 ruvB Holliday juncti 91.1 0.29 6.3E-06 47.8 4.6 17 183-199 31-47 (305)
397 PRK10436 hypothetical protein; 91.0 0.66 1.4E-05 48.1 7.3 25 182-207 218-242 (462)
398 PRK10917 ATP-dependent DNA hel 91.0 4 8.8E-05 44.7 13.8 78 224-309 472-561 (681)
399 TIGR00763 lon ATP-dependent pr 90.9 1 2.2E-05 50.2 9.1 18 182-199 347-364 (775)
400 COG2909 MalT ATP-dependent tra 90.9 0.42 9E-06 52.1 5.8 44 296-343 128-171 (894)
401 PRK00440 rfc replication facto 90.9 1.6 3.5E-05 42.6 9.8 16 184-199 40-55 (319)
402 PTZ00293 thymidine kinase; Pro 90.8 1 2.2E-05 41.6 7.5 18 182-199 4-21 (211)
403 TIGR03600 phage_DnaB phage rep 90.8 0.92 2E-05 46.6 8.2 149 180-345 192-356 (421)
404 PRK14970 DNA polymerase III su 90.7 2.7 5.9E-05 42.2 11.5 41 295-341 106-146 (367)
405 TIGR02524 dot_icm_DotB Dot/Icm 90.7 0.29 6.3E-06 49.1 4.3 18 181-198 133-150 (358)
406 PRK07133 DNA polymerase III su 90.7 2.6 5.6E-05 46.1 11.6 44 295-344 116-159 (725)
407 PRK10416 signal recognition pa 90.7 5.3 0.00012 39.4 13.0 59 296-354 195-256 (318)
408 PRK07471 DNA polymerase III su 90.7 1.7 3.8E-05 43.7 9.8 42 295-341 139-180 (365)
409 TIGR02525 plasmid_TraJ plasmid 90.5 0.51 1.1E-05 47.5 5.9 25 182-207 149-173 (372)
410 TIGR03880 KaiC_arch_3 KaiC dom 90.5 0.94 2E-05 42.0 7.3 53 181-247 15-67 (224)
411 PRK07993 DNA polymerase III su 90.5 3.5 7.6E-05 41.0 11.7 41 295-340 106-146 (334)
412 TIGR03878 thermo_KaiC_2 KaiC d 90.4 1.8 4E-05 41.3 9.4 53 181-246 35-90 (259)
413 PRK13850 type IV secretion sys 90.4 0.41 8.8E-06 51.9 5.3 50 182-246 139-188 (670)
414 PRK10867 signal recognition pa 90.3 3.7 8.1E-05 42.2 11.9 17 184-200 102-118 (433)
415 PRK13851 type IV secretion sys 90.3 0.31 6.8E-06 48.5 4.1 45 178-236 158-202 (344)
416 TIGR01242 26Sp45 26S proteasom 90.1 0.6 1.3E-05 47.0 6.0 18 182-199 156-173 (364)
417 PRK13900 type IV secretion sys 90.1 0.67 1.4E-05 46.0 6.2 46 178-237 156-201 (332)
418 PRK07004 replicative DNA helic 90.0 0.9 2E-05 47.2 7.3 146 181-346 212-377 (460)
419 PRK09087 hypothetical protein; 89.9 1.1 2.3E-05 42.0 7.1 42 300-346 90-131 (226)
420 TIGR00708 cobA cob(I)alamin ad 89.9 2.5 5.5E-05 37.7 9.1 54 295-352 95-150 (173)
421 KOG0331 ATP-dependent RNA heli 89.9 1.1 2.3E-05 46.8 7.6 72 222-303 340-415 (519)
422 PRK11192 ATP-dependent RNA hel 89.9 1.6 3.4E-05 45.0 9.1 70 224-303 246-319 (434)
423 PRK10590 ATP-dependent RNA hel 89.8 2.1 4.5E-05 44.5 10.0 70 224-303 246-319 (456)
424 PF05707 Zot: Zonular occluden 89.8 0.57 1.2E-05 42.6 5.0 55 297-352 79-135 (193)
425 TIGR02237 recomb_radB DNA repa 89.7 0.86 1.9E-05 41.7 6.3 25 181-205 11-35 (209)
426 TIGR03689 pup_AAA proteasome A 89.6 0.79 1.7E-05 48.1 6.5 53 144-199 178-233 (512)
427 PRK05748 replicative DNA helic 89.6 1.5 3.3E-05 45.5 8.6 147 181-345 202-367 (448)
428 PTZ00361 26 proteosome regulat 89.5 0.9 1.9E-05 46.8 6.8 19 181-199 216-234 (438)
429 KOG0733 Nuclear AAA ATPase (VC 89.5 1.4 3.1E-05 46.4 8.1 59 138-199 180-240 (802)
430 PF05918 API5: Apoptosis inhib 89.4 0.11 2.4E-06 54.4 0.1 8 31-38 513-520 (556)
431 COG0513 SrmB Superfamily II DN 89.2 2.2 4.7E-05 45.1 9.6 69 225-303 275-347 (513)
432 PTZ00110 helicase; Provisional 89.1 7.4 0.00016 41.5 13.6 74 222-305 376-453 (545)
433 PF06733 DEAD_2: DEAD_2; Inte 89.1 0.26 5.7E-06 43.9 2.3 46 266-311 112-159 (174)
434 TIGR00602 rad24 checkpoint pro 89.1 2.2 4.7E-05 46.1 9.5 45 145-200 81-128 (637)
435 PRK04837 ATP-dependent RNA hel 89.0 1.7 3.8E-05 44.5 8.6 72 224-305 256-331 (423)
436 cd01128 rho_factor Transcripti 88.9 1.2 2.6E-05 42.3 6.7 20 179-198 13-32 (249)
437 COG2874 FlaH Predicted ATPases 88.9 11 0.00024 34.8 12.4 154 183-365 29-193 (235)
438 PRK13822 conjugal transfer cou 88.8 0.66 1.4E-05 50.1 5.4 50 182-246 224-273 (641)
439 PRK13880 conjugal transfer cou 88.8 0.62 1.3E-05 50.4 5.2 49 182-245 175-223 (636)
440 cd01394 radB RadB. The archaea 88.7 1.1 2.5E-05 41.2 6.4 23 182-204 19-41 (218)
441 COG2804 PulE Type II secretory 88.7 0.44 9.6E-06 49.1 3.8 41 168-209 242-284 (500)
442 COG4555 NatA ABC-type Na+ tran 88.7 2.6 5.7E-05 38.5 8.2 55 295-353 149-203 (245)
443 TIGR00665 DnaB replicative DNA 88.6 1.2 2.5E-05 46.0 7.0 143 181-340 194-353 (434)
444 PRK10865 protein disaggregatio 88.5 1.4 3E-05 49.5 8.0 17 183-199 200-216 (857)
445 KOG2228 Origin recognition com 88.5 3.3 7.1E-05 40.8 9.3 58 284-342 124-181 (408)
446 TIGR01243 CDC48 AAA family ATP 88.5 2 4.3E-05 47.5 9.1 53 144-199 174-229 (733)
447 TIGR01243 CDC48 AAA family ATP 88.4 1.3 2.8E-05 49.1 7.5 17 183-199 488-504 (733)
448 cd00267 ABC_ATPase ABC (ATP-bi 88.3 0.52 1.1E-05 41.1 3.6 49 296-348 97-145 (157)
449 KOG0058 Peptide exporter, ABC 88.3 0.96 2.1E-05 48.6 6.0 41 295-340 620-660 (716)
450 PRK07399 DNA polymerase III su 88.2 2.4 5.1E-05 41.8 8.5 50 284-340 112-161 (314)
451 cd03276 ABC_SMC6_euk Eukaryoti 88.1 2.5 5.4E-05 38.6 8.1 51 295-346 129-179 (198)
452 TIGR02397 dnaX_nterm DNA polym 88.0 3.7 8E-05 40.8 10.0 30 295-328 115-144 (355)
453 TIGR02688 conserved hypothetic 88.0 1.4 3.1E-05 44.8 6.9 47 154-200 174-227 (449)
454 KOG2227 Pre-initiation complex 88.0 2.7 5.9E-05 43.0 8.8 18 182-199 175-192 (529)
455 TIGR00614 recQ_fam ATP-depende 88.0 2.4 5.2E-05 44.2 8.9 74 224-307 227-304 (470)
456 PRK13876 conjugal transfer cou 87.9 0.54 1.2E-05 50.9 4.1 50 182-246 144-193 (663)
457 PF05729 NACHT: NACHT domain 87.9 6.3 0.00014 33.9 10.4 16 184-199 2-17 (166)
458 PRK11776 ATP-dependent RNA hel 87.9 3.2 6.9E-05 43.1 9.8 73 225-307 244-320 (460)
459 COG0630 VirB11 Type IV secreto 87.9 0.63 1.4E-05 45.8 4.2 58 165-236 125-183 (312)
460 KOG1133 Helicase of the DEAD s 87.9 0.54 1.2E-05 49.9 3.9 43 167-209 15-61 (821)
461 PF03237 Terminase_6: Terminas 87.9 2.8 6.1E-05 41.5 9.1 105 186-312 1-112 (384)
462 PRK10263 DNA translocase FtsK; 87.9 2.5 5.5E-05 48.6 9.3 27 183-209 1011-1037(1355)
463 PRK08058 DNA polymerase III su 87.8 1.4 3.1E-05 43.6 6.8 40 295-339 108-147 (329)
464 PF02572 CobA_CobO_BtuR: ATP:c 87.8 4.2 9.1E-05 36.2 9.0 54 294-351 93-148 (172)
465 COG2109 BtuR ATP:corrinoid ade 87.7 2.4 5.2E-05 38.2 7.3 56 296-353 121-176 (198)
466 PRK04841 transcriptional regul 87.7 6.3 0.00014 44.5 12.7 45 296-344 120-164 (903)
467 TIGR03346 chaperone_ClpB ATP-d 87.6 1.8 3.9E-05 48.7 8.1 18 183-200 195-212 (852)
468 cd03268 ABC_BcrA_bacitracin_re 87.5 2.9 6.4E-05 38.1 8.3 50 295-348 142-191 (208)
469 PRK06090 DNA polymerase III su 87.4 4.8 0.0001 39.7 10.0 41 295-340 106-146 (319)
470 TIGR02639 ClpA ATP-dependent C 87.4 4.3 9.3E-05 44.9 10.8 19 182-200 203-221 (731)
471 COG4907 Predicted membrane pro 87.4 0.46 9.9E-06 47.8 2.9 26 60-85 569-594 (595)
472 TIGR02203 MsbA_lipidA lipid A 87.3 0.91 2E-05 48.5 5.5 41 295-339 485-525 (571)
473 PRK05636 replicative DNA helic 87.3 1.4 3E-05 46.4 6.6 50 296-346 374-428 (505)
474 TIGR02858 spore_III_AA stage I 87.3 5 0.00011 38.6 9.9 24 183-208 112-135 (270)
475 COG3267 ExeA Type II secretory 87.2 3 6.4E-05 39.4 7.9 28 178-206 46-74 (269)
476 TIGR03375 type_I_sec_LssB type 87.2 0.55 1.2E-05 51.6 3.7 31 295-325 617-647 (694)
477 TIGR01420 pilT_fam pilus retra 87.2 1.1 2.4E-05 44.7 5.6 19 181-199 121-139 (343)
478 TIGR02204 MsbA_rel ABC transpo 87.2 0.77 1.7E-05 49.2 4.8 31 295-325 492-522 (576)
479 cd03221 ABCF_EF-3 ABCF_EF-3 E 87.1 1.5 3.2E-05 37.8 5.7 47 295-348 86-132 (144)
480 PF13555 AAA_29: P-loop contai 87.1 0.12 2.5E-06 37.8 -1.0 33 174-208 15-47 (62)
481 COG1219 ClpX ATP-dependent pro 87.0 0.4 8.6E-06 46.6 2.1 27 181-209 96-122 (408)
482 KOG2543 Origin recognition com 86.8 6.2 0.00014 39.5 10.2 46 296-345 114-161 (438)
483 COG1197 Mfd Transcription-repa 86.7 5.9 0.00013 45.1 11.2 132 171-310 731-886 (1139)
484 KOG0741 AAA+-type ATPase [Post 86.7 1.2 2.6E-05 46.2 5.4 58 139-199 210-273 (744)
485 COG0552 FtsY Signal recognitio 86.7 9.3 0.0002 37.6 11.3 133 185-353 142-280 (340)
486 cd01130 VirB11-like_ATPase Typ 86.7 0.58 1.3E-05 42.2 3.0 33 167-199 9-42 (186)
487 TIGR03522 GldA_ABC_ATP gliding 86.7 6.8 0.00015 38.2 10.8 54 295-353 149-202 (301)
488 KOG1016 Predicted DNA helicase 86.7 12 0.00025 40.9 12.7 146 182-345 282-476 (1387)
489 PHA00012 I assembly protein 86.7 10 0.00022 37.4 11.5 23 185-207 4-26 (361)
490 cd03230 ABC_DR_subfamily_A Thi 86.5 1.4 3E-05 39.1 5.4 49 295-347 111-159 (173)
491 cd03247 ABCC_cytochrome_bd The 86.5 3 6.5E-05 37.1 7.6 31 295-325 114-144 (178)
492 COG0593 DnaA ATPase involved i 86.4 4.7 0.0001 41.0 9.5 120 225-349 87-225 (408)
493 cd00079 HELICc Helicase superf 86.4 6 0.00013 32.4 9.0 74 224-307 29-106 (131)
494 TIGR02538 type_IV_pilB type IV 86.2 0.77 1.7E-05 49.1 4.1 37 170-207 302-340 (564)
495 cd03215 ABC_Carb_Monos_II This 86.2 2.5 5.4E-05 37.8 6.9 52 295-350 120-171 (182)
496 PRK08506 replicative DNA helic 86.2 1.9 4.1E-05 45.1 6.9 148 181-346 191-355 (472)
497 PRK08840 replicative DNA helic 86.2 4.6 9.9E-05 42.1 9.7 150 181-346 216-382 (464)
498 cd01129 PulE-GspE PulE/GspE Th 86.1 0.76 1.7E-05 44.1 3.7 35 172-207 68-104 (264)
499 PRK09435 membrane ATPase/prote 86.1 15 0.00033 36.4 12.8 158 185-353 59-255 (332)
500 COG2812 DnaX DNA polymerase II 86.1 1.2 2.5E-05 46.7 5.2 126 186-353 42-173 (515)
No 1
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-64 Score=498.09 Aligned_cols=333 Identities=61% Similarity=0.924 Sum_probs=313.0
Q ss_pred cccccccCCCCCCCCCcccccCCCCCCcCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCC
Q 013189 115 VAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSG 194 (448)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsG 194 (448)
+....+++++|++|++++++.++.++|+++..|.+..+.+.|..++...+|.+|||+|+++||.+..|+|+++||+||||
T Consensus 44 ~~~~~~~~~nfd~~~~i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsG 123 (482)
T KOG0335|consen 44 FFLGISTGINFDKYNDIPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSG 123 (482)
T ss_pred hhhccchhhccCCccceeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCc
Confidence 33346889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCC
Q 013189 195 KTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGV 274 (448)
Q Consensus 195 KT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~ 274 (448)
||.+|++|++..+++.++..+.......+|.+|||+||||||.|+++++++|.+..+++++..|||.+...+.+.+.++|
T Consensus 124 KT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gc 203 (482)
T KOG0335|consen 124 KTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGC 203 (482)
T ss_pred chHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCc
Confidence 99999999999999988766655555578999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCc-CCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHh
Q 013189 275 DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF 353 (448)
Q Consensus 275 ~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~ 353 (448)
||+|||||+|.++++.+++.|.+++||||||||+|+| ++|.++|+.|+.++.+++...+|+++||||+|.+++.++..|
T Consensus 204 dIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~f 283 (482)
T KOG0335|consen 204 DILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADF 283 (482)
T ss_pred cEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHH
Confidence 9999999999999999999999999999999999999 999999999999999998899999999999999999999999
Q ss_pred hcC-cEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCC--CCCccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 354 LAN-YIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVH--GKQALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 354 l~~-~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~--~~~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
+.+ |+++.|++++...+++.|.+.+|.+.+|...|+++|......... ....+++|||+|++.|+.|+.+|...+++
T Consensus 284 l~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~ 363 (482)
T KOG0335|consen 284 LKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYP 363 (482)
T ss_pred hhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCC
Confidence 996 999999999999999999999999999999999999976532111 12348999999999999999999999999
Q ss_pred eEEecCCCCHHHHHHHh
Q 013189 431 ATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 431 ~~~iHg~~~q~eR~~~l 447 (448)
+..|||+.+|.||+++|
T Consensus 364 ~~sIhg~~tq~er~~al 380 (482)
T KOG0335|consen 364 AKSIHGDRTQIEREQAL 380 (482)
T ss_pred ceeecchhhhhHHHHHH
Confidence 99999999999999987
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-61 Score=482.32 Aligned_cols=292 Identities=46% Similarity=0.714 Sum_probs=272.6
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013189 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
..|.+++|++++...++..+|++|||||.+.||.++.|+|++.+|.||||||++|+||++.++..... ...+..+|
T Consensus 91 ~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~----~~~~~~~P 166 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQG----KLSRGDGP 166 (519)
T ss_pred hhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccc----cccCCCCC
Confidence 38999999999999999999999999999999999999999999999999999999999999987421 13456689
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEe
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 304 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlD 304 (448)
++|||+||||||.||..++.+|+....++++++|||.+...|.+.+.++++|+|+|||||+++++.+.++|+.|.|||||
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLD 246 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLD 246 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEecccc--CcccceeEEEEEeccc
Q 013189 305 EADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVG--SSTDLIVQRVEFVHES 382 (448)
Q Consensus 305 Eah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~--~~~~~i~q~~~~~~~~ 382 (448)
|||+||+|||+++|++|+..+. +..+|++++|||||.+++.++.+||.+|+.+.++... ....++.|.++.++..
T Consensus 247 EADrMldmGFe~qI~~Il~~i~---~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~ 323 (519)
T KOG0331|consen 247 EADRMLDMGFEPQIRKILSQIP---RPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDET 323 (519)
T ss_pred cHHhhhccccHHHHHHHHHhcC---CCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHH
Confidence 9999999999999999999993 4456999999999999999999999999999988664 5678999999999999
Q ss_pred chHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 383 ~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.|...|.++|..... +.+.++||||+|++.|+.|+..|+..+++|.+||||++|.||+.+|
T Consensus 324 ~K~~~l~~lL~~~~~----~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L 384 (519)
T KOG0331|consen 324 AKLRKLGKLLEDISS----DSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVL 384 (519)
T ss_pred HHHHHHHHHHHHHhc----cCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHH
Confidence 999999999998762 2377899999999999999999999999999999999999999987
No 3
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.9e-58 Score=432.51 Aligned_cols=284 Identities=37% Similarity=0.553 Sum_probs=271.5
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCC
Q 013189 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (448)
Q Consensus 143 ~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 222 (448)
...+|.+|++.+.|.+++...++.+||++|+++||.++.|+|+|..|+||||||.+|+|||+++++.++ .
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p----------~ 128 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP----------K 128 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC----------C
Confidence 356899999999999999999999999999999999999999999999999999999999999999854 2
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhc-ccccCCCeeEE
Q 013189 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVSLQMIRYL 301 (448)
Q Consensus 223 ~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~-~~~~l~~v~~l 301 (448)
.+++|||+||||||.||.+.++.++..++++++++.||.....|...+.+.|||||||||+|.+++++ +.++++.++||
T Consensus 129 ~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~L 208 (476)
T KOG0330|consen 129 LFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFL 208 (476)
T ss_pred CceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999995 56899999999
Q ss_pred EEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecc
Q 013189 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE 381 (448)
Q Consensus 302 VlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~ 381 (448)
|+||||++|++.|.+.+.+|++.+ |.++|+++||||||+.+.+|....+.+|+.+.+.....+.+.+.|+|.++..
T Consensus 209 VlDEADrlLd~dF~~~ld~ILk~i----p~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~ 284 (476)
T KOG0330|consen 209 VLDEADRLLDMDFEEELDYILKVI----PRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG 284 (476)
T ss_pred hhchHHhhhhhhhHHHHHHHHHhc----CccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc
Confidence 999999999999999999999999 8899999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 382 ~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+|...|+.+|+... +..+||||+|+..++.++-+|+..|+.|..+||+|+|..|.-+|
T Consensus 285 k~K~~yLV~ll~e~~-------g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l 343 (476)
T KOG0330|consen 285 KDKDTYLVYLLNELA-------GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGAL 343 (476)
T ss_pred cccchhHHHHHHhhc-------CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHH
Confidence 999999999999875 67899999999999999999999999999999999999998665
No 4
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.6e-55 Score=458.31 Aligned_cols=298 Identities=44% Similarity=0.698 Sum_probs=271.2
Q ss_pred CCCCCCcCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccC
Q 013189 136 SGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR 215 (448)
Q Consensus 136 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~ 215 (448)
.+..+|.|+.+|++++|++.|+++|.++||.+|||+|.++||.+++|+|+|++||||||||++|++|++.++......
T Consensus 121 ~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~-- 198 (545)
T PTZ00110 121 AGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL-- 198 (545)
T ss_pred cCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc--
Confidence 577889999999999999999999999999999999999999999999999999999999999999999988754321
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccC
Q 013189 216 PRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSL 295 (448)
Q Consensus 216 ~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l 295 (448)
....+|.+|||+||||||.|+++++++|+...++++.+++||.+...+...+.++++|||+||++|++++.....++
T Consensus 199 ---~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l 275 (545)
T PTZ00110 199 ---RYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNL 275 (545)
T ss_pred ---cCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCCh
Confidence 12346899999999999999999999999888999999999999999999999999999999999999999888889
Q ss_pred CCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhc-CcEEEEecccc-Cccccee
Q 013189 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLA-NYIFLAVGRVG-SSTDLIV 373 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~-~~~~i~v~~~~-~~~~~i~ 373 (448)
.++++|||||||+|++++|.+++..|+..+ +..+|+++||||+|.+++.++..++. +++.+.++... ....++.
T Consensus 276 ~~v~~lViDEAd~mld~gf~~~i~~il~~~----~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~ 351 (545)
T PTZ00110 276 RRVTYLVLDEADRMLDMGFEPQIRKIVSQI----RPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIK 351 (545)
T ss_pred hhCcEEEeehHHhhhhcchHHHHHHHHHhC----CCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCee
Confidence 999999999999999999999999999998 67899999999999999999999986 68888877655 3446788
Q ss_pred EEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 374 QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 374 q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
|.+..+++.+|...|.+++..... ...++||||+|++.|+.|+..|...++++.++||++++++|+++|
T Consensus 352 q~~~~~~~~~k~~~L~~ll~~~~~-----~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il 420 (545)
T PTZ00110 352 QEVFVVEEHEKRGKLKMLLQRIMR-----DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVL 420 (545)
T ss_pred EEEEEEechhHHHHHHHHHHHhcc-----cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHH
Confidence 888888888899999998877542 267899999999999999999999999999999999999999876
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-55 Score=457.04 Aligned_cols=284 Identities=41% Similarity=0.645 Sum_probs=263.6
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013189 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
..|.+++|++.+++++.++||.+|||+|..+||.++.|+|++++|+||||||++|++|+|+.+.... ....+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~--------~~~~~ 100 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV--------ERKYV 100 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc--------ccCCC
Confidence 6799999999999999999999999999999999999999999999999999999999999975421 01111
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccC-CcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEE
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVl 303 (448)
.+||++||||||.||++++.+++... ++++.+++||.++..|...+.+++||||+|||||+|+++++.+++..+++|||
T Consensus 101 ~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 101 SALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred ceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEe
Confidence 19999999999999999999999888 79999999999999999999999999999999999999999999999999999
Q ss_pred ecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccC--cccceeEEEEEecc
Q 013189 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGS--STDLIVQRVEFVHE 381 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~--~~~~i~q~~~~~~~ 381 (448)
||||+|+++||.+++..|+..+ +.++|+++||||+|..+..+++.++.+|..+.+..... +...+.|++..++.
T Consensus 181 DEADrmLd~Gf~~~i~~I~~~~----p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~ 256 (513)
T COG0513 181 DEADRMLDMGFIDDIEKILKAL----PPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVES 256 (513)
T ss_pred ccHhhhhcCCCHHHHHHHHHhC----CcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCC
Confidence 9999999999999999999999 67999999999999999999999999999988885555 88999999999988
Q ss_pred cc-hHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 382 SD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 382 ~~-k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+ |...|..++.... ..++||||+|+..|+.|+..|...|++|..|||+|+|++|+++|
T Consensus 257 ~~~k~~~L~~ll~~~~-------~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l 316 (513)
T COG0513 257 EEEKLELLLKLLKDED-------EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRAL 316 (513)
T ss_pred HHHHHHHHHHHHhcCC-------CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHH
Confidence 76 9999999998764 44699999999999999999999999999999999999999986
No 6
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=7.5e-55 Score=425.60 Aligned_cols=311 Identities=39% Similarity=0.648 Sum_probs=288.0
Q ss_pred CCcccccCCCCCCcCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHh
Q 013189 129 EDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 129 ~~~~v~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~ 208 (448)
+++.+...|..+|.|+.+|++.+|+.++++.|.+.+|..|||+|..+||+.+..+|+|.+|.||||||++|++|+|..+.
T Consensus 229 edynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~Is 308 (673)
T KOG0333|consen 229 EDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWIS 308 (673)
T ss_pred cceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHH
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHH
Q 013189 209 REQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLL 288 (448)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l 288 (448)
..++... ......+|.++||+|||||++||.++..+|+..++++++.++||.+..+|--.+..+|+|+|||||+|++.|
T Consensus 309 slP~~~~-~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~L 387 (673)
T KOG0333|consen 309 SLPPMAR-LENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSL 387 (673)
T ss_pred cCCCcch-hhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHH
Confidence 6543221 123456899999999999999999999999999999999999999999998899999999999999999999
Q ss_pred hcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCC---------------------CCceEEEEeccCChHHH
Q 013189 289 ERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPP---------------------GMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 289 ~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~---------------------~~~q~i~~SAT~~~~v~ 347 (448)
++..+-++++.|||+||||+|+||||++++..|+.++....- .-+|+++||||+|+.+.
T Consensus 388 enr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~ve 467 (673)
T KOG0333|consen 388 ENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVE 467 (673)
T ss_pred HHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHH
Confidence 999889999999999999999999999999999999943211 12899999999999999
Q ss_pred HHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC
Q 013189 348 RLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN 427 (448)
Q Consensus 348 ~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~ 427 (448)
.|++.||.+|+.+.++..+.+.+.+.|.++.+.+.+|...|+.+|.... ..++|||+|+++.|+.||+.|.+.
T Consensus 468 rlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~-------~ppiIIFvN~kk~~d~lAk~LeK~ 540 (673)
T KOG0333|consen 468 RLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNF-------DPPIIIFVNTKKGADALAKILEKA 540 (673)
T ss_pred HHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCC-------CCCEEEEEechhhHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999874 778999999999999999999999
Q ss_pred CCCeEEecCCCCHHHHHHHh
Q 013189 428 GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 428 g~~~~~iHg~~~q~eR~~~l 447 (448)
|++|+.|||+.+|++|+.+|
T Consensus 541 g~~~~tlHg~k~qeQRe~aL 560 (673)
T KOG0333|consen 541 GYKVTTLHGGKSQEQRENAL 560 (673)
T ss_pred cceEEEeeCCccHHHHHHHH
Confidence 99999999999999999887
No 7
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-55 Score=399.06 Aligned_cols=285 Identities=31% Similarity=0.484 Sum_probs=268.2
Q ss_pred cCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCC
Q 013189 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRT 221 (448)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 221 (448)
.++.+|++++|+++|++.+...||++|+.+|+.|||.|+.|+|++++|+.|+|||.+|.+.+|+.+.-. .
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~----------~ 93 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS----------V 93 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc----------c
Confidence 456789999999999999999999999999999999999999999999999999999999998866322 2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEE
Q 013189 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYL 301 (448)
Q Consensus 222 ~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~l 301 (448)
...++|||+||||||.|+.+.+..++...++++..+.||.+..+.++.+..|++++.+|||++++++++..+..+.|++|
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkml 173 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKML 173 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEE
Confidence 23569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecc
Q 013189 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE 381 (448)
Q Consensus 302 VlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~ 381 (448)
||||||.||+.||.+++..|+.++ |+..|++++|||+|.++.++...|+.||+.+.+.+.+.+.+.|.|+|+.++.
T Consensus 174 VLDEaDemL~kgfk~Qiydiyr~l----p~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~ 249 (400)
T KOG0328|consen 174 VLDEADEMLNKGFKEQIYDIYRYL----PPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEK 249 (400)
T ss_pred EeccHHHHHHhhHHHHHHHHHHhC----CCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeech
Confidence 999999999999999999999999 8899999999999999999999999999999999999999999999998876
Q ss_pred cc-hHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 382 SD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 382 ~~-k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
++ |+..|.++..... -.+++|||||++.++.|.+.|+..++.|.++||||.|+||++++
T Consensus 250 EewKfdtLcdLYd~Lt-------ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im 309 (400)
T KOG0328|consen 250 EEWKFDTLCDLYDTLT-------ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIM 309 (400)
T ss_pred hhhhHhHHHHHhhhhe-------hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHH
Confidence 55 9999999988764 44589999999999999999999999999999999999999886
No 8
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-56 Score=431.09 Aligned_cols=286 Identities=37% Similarity=0.545 Sum_probs=265.3
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCC
Q 013189 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 144 ~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
..+|.+++|+..|++++..+||.+|||||..+||..+.|+|+++||.||||||++|.+|+|.+|+-.+. +...
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk-------~~~~ 252 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPK-------KVAA 252 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcc-------cCcc
Confidence 458999999999999999999999999999999999999999999999999999999999999875431 2345
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcc-cccCCCeeEEE
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMIRYLA 302 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~-~~~l~~v~~lV 302 (448)
.++|||+|||||+.|++.+.++++..+.+.++++.||.+...|...|+..|||+|+|||||+|+|++. .+++.+|.+||
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLv 332 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLV 332 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEE
Confidence 67999999999999999999999999999999999999999999999999999999999999999885 57899999999
Q ss_pred EecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEec--
Q 013189 303 LDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH-- 380 (448)
Q Consensus 303 lDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~-- 380 (448)
+||||+||+.||.+++..|+..| ++.+|+|+|||||+.+|.+|+.-.|++|+.+++.........++|.|+.+.
T Consensus 333 lDEADRMLeegFademnEii~lc----pk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~ 408 (691)
T KOG0338|consen 333 LDEADRMLEEGFADEMNEIIRLC----PKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPK 408 (691)
T ss_pred echHHHHHHHHHHHHHHHHHHhc----cccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccc
Confidence 99999999999999999999999 999999999999999999999999999999999988888888999887664
Q ss_pred -ccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 381 -ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 381 -~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+.++...|..++...+ ...+||||.|++.|..+.-.|--.|+++..+||.++|++|.++|
T Consensus 409 re~dRea~l~~l~~rtf-------~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL 469 (691)
T KOG0338|consen 409 REGDREAMLASLITRTF-------QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESL 469 (691)
T ss_pred cccccHHHHHHHHHHhc-------ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHH
Confidence 3456667777777765 66799999999999999999999999999999999999999876
No 9
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-54 Score=419.39 Aligned_cols=301 Identities=41% Similarity=0.671 Sum_probs=282.2
Q ss_pred ccccCCCCCCcCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhh
Q 013189 132 PVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQ 211 (448)
Q Consensus 132 ~v~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~ 211 (448)
-+.+++...|.|+.+|+.+++++.|+.++++.-|.+|||+|.+++|..+.|+|++-+|.||||||.+|+.|++.+++.++
T Consensus 210 nlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~ 289 (731)
T KOG0339|consen 210 NLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQP 289 (731)
T ss_pred cceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchh
Confidence 34468889999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcc
Q 013189 212 YVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA 291 (448)
Q Consensus 212 ~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~ 291 (448)
... ...+|.+||++||||||.||+.++++|++.++++++++|||.+..+|.+.|..++.|||||||||++++.-+
T Consensus 290 eL~-----~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmK 364 (731)
T KOG0339|consen 290 ELK-----PGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMK 364 (731)
T ss_pred hhc-----CCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhh
Confidence 543 367899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccc
Q 013189 292 RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDL 371 (448)
Q Consensus 292 ~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~ 371 (448)
..++.+++||||||||+|+++||+++++.|..++ .+++|+|+|||||+..|..+++++|.+|+.+..+.++.....
T Consensus 365 atn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hi----rpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~d 440 (731)
T KOG0339|consen 365 ATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHI----RPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANED 440 (731)
T ss_pred cccceeeeEEEEechhhhhccccHHHHHHHHhhc----CCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccc
Confidence 9999999999999999999999999999999999 889999999999999999999999999999999999999999
Q ss_pred eeEEEEEecc-cchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 372 IVQRVEFVHE-SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 372 i~q~~~~~~~-~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
|+|.+.++.. ..|..+|+.-|..... .+++||||.-+..++.++..|...+|+|..+||+|.|.+|.++|
T Consensus 441 ITQ~V~V~~s~~~Kl~wl~~~L~~f~S------~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~l 511 (731)
T KOG0339|consen 441 ITQTVSVCPSEEKKLNWLLRHLVEFSS------EGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVL 511 (731)
T ss_pred hhheeeeccCcHHHHHHHHHHhhhhcc------CCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHH
Confidence 9999988854 5677777776665532 67899999999999999999999999999999999999999887
No 10
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.8e-54 Score=407.76 Aligned_cols=299 Identities=37% Similarity=0.659 Sum_probs=280.6
Q ss_pred cCCCCCCcCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhccc
Q 013189 135 TSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQ 214 (448)
Q Consensus 135 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~ 214 (448)
..++.+|+|+.+|.++.++..|++.+++.|+.+|||+|.+-+|.+++|+|.+-.|-||||||++|.||++.+.+.+....
T Consensus 160 veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~l 239 (610)
T KOG0341|consen 160 VEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMML 239 (610)
T ss_pred eeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999998887765432
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc------cCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHH
Q 013189 215 RPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY------QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLL 288 (448)
Q Consensus 215 ~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~------~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l 288 (448)
+-.+..+|..|||||+||||.|+++.+..|+. .+.++..+++||.++.+|...+.+|++|+|+|||||.|+|
T Consensus 240 --Pf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL 317 (610)
T KOG0341|consen 240 --PFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDML 317 (610)
T ss_pred --ccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHH
Confidence 24567789999999999999999999998853 3457899999999999999999999999999999999999
Q ss_pred hcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCc
Q 013189 289 ERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSS 368 (448)
Q Consensus 289 ~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~ 368 (448)
.+..++|.-++||++||||+|+++||+++|+.|+.++ +..+|+++||||+|..+|.+++..+-+|+.+.|++.+..
T Consensus 318 ~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~F----K~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAA 393 (610)
T KOG0341|consen 318 AKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFF----KGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAA 393 (610)
T ss_pred HHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHH----hhhhheeeeeccccHHHHHHHHhhcccceEEeccccccc
Confidence 9999999999999999999999999999999999999 778999999999999999999999999999999999999
Q ss_pred ccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 369 TDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 369 ~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.-++.|.+++++.+.|.-.|++-|+.. ..++||||+.+..++.+++||--.|..+++|||+..|++|..+|
T Consensus 394 sldViQevEyVkqEaKiVylLeCLQKT--------~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai 464 (610)
T KOG0341|consen 394 SLDVIQEVEYVKQEAKIVYLLECLQKT--------SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAI 464 (610)
T ss_pred chhHHHHHHHHHhhhhhhhHHHHhccC--------CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHH
Confidence 999999999999999999999888765 56899999999999999999999999999999999999999876
No 11
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-53 Score=401.40 Aligned_cols=297 Identities=38% Similarity=0.593 Sum_probs=268.5
Q ss_pred CCCCCCcCCCCcccC-CCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhccc
Q 013189 136 SGENVPPAVNTFAEI-DLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQ 214 (448)
Q Consensus 136 ~~~~~~~~~~~f~~~-~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~ 214 (448)
+...+|.|..+|++. ...++++++|++.||.+|||+|.++||++++|.|++.+|+||+|||++||+|-+.++......
T Consensus 210 ekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~- 288 (629)
T KOG0336|consen 210 EKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKR- 288 (629)
T ss_pred CcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchh-
Confidence 445688999999975 788999999999999999999999999999999999999999999999999998877654322
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhccccc
Q 013189 215 RPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVS 294 (448)
Q Consensus 215 ~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~ 294 (448)
.....+|.+|+++|||||+.|+.-+++++.+. +.+.+++|||.+..+|+..+.++.+|+|+||++|.++...+.++
T Consensus 289 ---~~qr~~p~~lvl~ptreLalqie~e~~kysyn-g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~ 364 (629)
T KOG0336|consen 289 ---REQRNGPGVLVLTPTRELALQIEGEVKKYSYN-GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVIN 364 (629)
T ss_pred ---hhccCCCceEEEeccHHHHHHHHhHHhHhhhc-CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeee
Confidence 22466789999999999999999999998764 78888999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcc-ccee
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSST-DLIV 373 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~-~~i~ 373 (448)
|.+|.||||||||+||+|||+++|++|+-.+ .+++|+++.|||||+.|..|+..|+++|+.+.++..+... ..+.
T Consensus 365 l~siTYlVlDEADrMLDMgFEpqIrkilldi----RPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVk 440 (629)
T KOG0336|consen 365 LASITYLVLDEADRMLDMGFEPQIRKILLDI----RPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVK 440 (629)
T ss_pred eeeeEEEEecchhhhhcccccHHHHHHhhhc----CCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeee
Confidence 9999999999999999999999999999999 7899999999999999999999999999999999887654 6678
Q ss_pred EEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 374 QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 374 q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
|.+....+.+|.+.+-.++.... ...++||||.++-.|+.|...|...||.+.++||+..|.+|+.+|
T Consensus 441 Q~i~v~~d~~k~~~~~~f~~~ms------~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al 508 (629)
T KOG0336|consen 441 QNIIVTTDSEKLEIVQFFVANMS------SNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMAL 508 (629)
T ss_pred eeEEecccHHHHHHHHHHHHhcC------CCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHH
Confidence 88866677888876666666543 367899999999999999999999999999999999999999987
No 12
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.8e-51 Score=400.31 Aligned_cols=288 Identities=32% Similarity=0.498 Sum_probs=262.6
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCC
Q 013189 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (448)
Q Consensus 143 ~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 222 (448)
....|+++.|++..+++|.++||+++|++|+.+||.++.|+|+++.|.||+|||+||++|+++.+++.....+ .
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r------~ 153 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR------N 153 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC------C
Confidence 4567889999999999999999999999999999999999999999999999999999999999988765432 4
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccC-CcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhccc-ccCCCeeE
Q 013189 223 YPLALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR-VSLQMIRY 300 (448)
Q Consensus 223 ~~~~lil~PtreLa~qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~-~~l~~v~~ 300 (448)
+..+||||||||||.|++.+++++.+.. .+.+.+++||+......+.+.++|+|||||||||+|++++.. +.+.++++
T Consensus 154 ~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~ 233 (543)
T KOG0342|consen 154 GTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKC 233 (543)
T ss_pred CeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccce
Confidence 5679999999999999999999999877 899999999999999999999999999999999999999854 45678899
Q ss_pred EEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhc-CcEEEEecccc--CcccceeEEEE
Q 013189 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLA-NYIFLAVGRVG--SSTDLIVQRVE 377 (448)
Q Consensus 301 lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~-~~~~i~v~~~~--~~~~~i~q~~~ 377 (448)
+|+||||++|++||+++|+.|+..+ |..+|+++||||.+++|+++++..|. +++++.+.... .+.+.+.|.|.
T Consensus 234 lvlDEADrlLd~GF~~di~~Ii~~l----pk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyv 309 (543)
T KOG0342|consen 234 LVLDEADRLLDIGFEEDVEQIIKIL----PKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYV 309 (543)
T ss_pred eEeecchhhhhcccHHHHHHHHHhc----cccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEE
Confidence 9999999999999999999999999 88999999999999999999999887 58888776553 45688999998
Q ss_pred EecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHH
Q 013189 378 FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 378 ~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~ 446 (448)
.+....++..|+.+|+.+.. ..++||||.|+..+..+++.|....++|..|||+++|..|..+
T Consensus 310 v~~~~~~f~ll~~~LKk~~~------~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~ 372 (543)
T KOG0342|consen 310 VAPSDSRFSLLYTFLKKNIK------RYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTST 372 (543)
T ss_pred eccccchHHHHHHHHHHhcC------CceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchH
Confidence 88888888999999998862 3789999999999999999999999999999999999998764
No 13
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=9.8e-50 Score=416.65 Aligned_cols=303 Identities=35% Similarity=0.583 Sum_probs=271.5
Q ss_pred ccccCCCCCCcCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhh
Q 013189 132 PVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQ 211 (448)
Q Consensus 132 ~v~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~ 211 (448)
.+...+...|.|+.+|++++|++.|+++|...||.+|||+|.++||.++.|+|++++||||||||++|++|+|.+++...
T Consensus 108 ~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~ 187 (518)
T PLN00206 108 EIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIR 187 (518)
T ss_pred CCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhc
Confidence 34457889999999999999999999999999999999999999999999999999999999999999999999887532
Q ss_pred cccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcc
Q 013189 212 YVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA 291 (448)
Q Consensus 212 ~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~ 291 (448)
... .....+|++|||+||||||.|+++.++.+....++++..++||.....+...+..+++|+|+||++|.+++.+.
T Consensus 188 ~~~---~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~ 264 (518)
T PLN00206 188 SGH---PSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH 264 (518)
T ss_pred ccc---ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 111 11235689999999999999999999999888889999999999999998889999999999999999999988
Q ss_pred cccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccc
Q 013189 292 RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDL 371 (448)
Q Consensus 292 ~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~ 371 (448)
.+.++++++|||||||+|++++|++++..|+..+ + ..|+++||||++.+++.++..++.+++.+.++........
T Consensus 265 ~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l----~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~ 339 (518)
T PLN00206 265 DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL----S-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKA 339 (518)
T ss_pred CccchheeEEEeecHHHHhhcchHHHHHHHHHhC----C-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcc
Confidence 8899999999999999999999999999999887 2 4699999999999999999999999999998877777778
Q ss_pred eeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHH-CCCCeEEecCCCCHHHHHHHh
Q 013189 372 IVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYM-NGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 372 i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~-~g~~~~~iHg~~~q~eR~~~l 447 (448)
+.|.+.++....|...|.+++..... ...++||||+|+..|+.|++.|.. .++++..+||+|++.+|+.++
T Consensus 340 v~q~~~~~~~~~k~~~l~~~l~~~~~-----~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il 411 (518)
T PLN00206 340 VKQLAIWVETKQKKQKLFDILKSKQH-----FKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVM 411 (518)
T ss_pred eeEEEEeccchhHHHHHHHHHHhhcc-----cCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHH
Confidence 88888888888888888888875431 145799999999999999999975 699999999999999999876
No 14
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=9.3e-51 Score=398.71 Aligned_cols=287 Identities=31% Similarity=0.500 Sum_probs=262.6
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCC
Q 013189 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (448)
Q Consensus 143 ~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 222 (448)
.+..|++++|+...++.|+..+|.+||.+|+.+||..+.|+|++..|.||||||+||++|+|..|...+-. ...
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs------~~D 140 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWS------PTD 140 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCC------CCC
Confidence 35679999999999999999999999999999999999999999999999999999999999999876422 233
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcc-cccCCCeeEE
Q 013189 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMIRYL 301 (448)
Q Consensus 223 ~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~-~~~l~~v~~l 301 (448)
+.-||||+||||||.|+++.+.+.+....+...+++||.........+. .++|||||||||+++|+.+ .++..++.+|
T Consensus 141 GlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmL 219 (758)
T KOG0343|consen 141 GLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQML 219 (758)
T ss_pred CceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEE
Confidence 4559999999999999999999999999999999999999777666655 4899999999999999875 5678999999
Q ss_pred EEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEecc--ccCcccceeEEEEEe
Q 013189 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGR--VGSSTDLIVQRVEFV 379 (448)
Q Consensus 302 VlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~--~~~~~~~i~q~~~~~ 379 (448)
||||||+||+|||...+..|++.+ |..+||++||||-+..+.+|++-.+.||.++.+.. ...++.++.|+|+.+
T Consensus 220 vLDEADR~LDMGFk~tL~~Ii~~l----P~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v 295 (758)
T KOG0343|consen 220 VLDEADRMLDMGFKKTLNAIIENL----PKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIV 295 (758)
T ss_pred EeccHHHHHHHhHHHHHHHHHHhC----ChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEE
Confidence 999999999999999999999999 99999999999999999999999999999998873 356778899999999
Q ss_pred cccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC--CCCeEEecCCCCHHHHHHHh
Q 013189 380 HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 380 ~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~--g~~~~~iHg~~~q~eR~~~l 447 (448)
+-.+|+..|..++..+. ..++|||+.|++++..+++.++.. |++..++||.|+|..|..+.
T Consensus 296 ~l~~Ki~~L~sFI~shl-------k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~ 358 (758)
T KOG0343|consen 296 PLEDKIDMLWSFIKSHL-------KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVY 358 (758)
T ss_pred ehhhHHHHHHHHHHhcc-------ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHH
Confidence 99999999999999886 678999999999999999999876 99999999999999998763
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.3e-49 Score=405.54 Aligned_cols=291 Identities=32% Similarity=0.502 Sum_probs=261.4
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013189 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
.+|++++|++.+++++..+||..|||+|+++||.+++|+|++++||||||||++|++|+++.++...... .....++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~---~~~~~~~ 84 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE---DRKVNQP 84 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccc---ccccCCc
Confidence 6899999999999999999999999999999999999999999999999999999999999987643211 1123468
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEe
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 304 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlD 304 (448)
++|||+||||||.|+++.+..+....++++..++||.....+...+..+++|||+||++|.+++....+.++++++||||
T Consensus 85 ~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViD 164 (423)
T PRK04837 85 RALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLD 164 (423)
T ss_pred eEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEe
Confidence 89999999999999999999999888999999999999988888888899999999999999999888899999999999
Q ss_pred cCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccch
Q 013189 305 EADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDK 384 (448)
Q Consensus 305 Eah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k 384 (448)
|||+|++++|..++..++..+.. ...+|+++||||++..+..++..++.++..+.+.........+.+.+.++...+|
T Consensus 165 Ead~l~~~~f~~~i~~i~~~~~~--~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k 242 (423)
T PRK04837 165 EADRMFDLGFIKDIRWLFRRMPP--ANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEK 242 (423)
T ss_pred cHHHHhhcccHHHHHHHHHhCCC--ccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHH
Confidence 99999999999999999988822 2457899999999999999999999999988887666666778887777777788
Q ss_pred HHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 385 RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 385 ~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
...|..++.... ..++||||+++..|+.|++.|...|+++..+||+|++.+|.+++
T Consensus 243 ~~~l~~ll~~~~-------~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l 298 (423)
T PRK04837 243 MRLLQTLIEEEW-------PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRIL 298 (423)
T ss_pred HHHHHHHHHhcC-------CCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHH
Confidence 888888876542 56799999999999999999999999999999999999999876
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=7e-49 Score=405.09 Aligned_cols=287 Identities=39% Similarity=0.639 Sum_probs=258.9
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCce
Q 013189 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPL 225 (448)
Q Consensus 146 ~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~ 225 (448)
+|++++|++.|+++|.++||.+|||+|.++||.++.++|++++||||||||++|++|+++.+....... .....++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~----~~~~~~~ 77 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHA----KGRRPVR 77 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhccccc----ccCCCce
Confidence 689999999999999999999999999999999999999999999999999999999999886543211 1123467
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEec
Q 013189 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDE 305 (448)
Q Consensus 226 ~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDE 305 (448)
+|||+||+|||.|+.+.++++....++++..++||.+...+...+..+++|||+||++|++++....+.++++++|||||
T Consensus 78 aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDE 157 (456)
T PRK10590 78 ALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDE 157 (456)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeec
Confidence 99999999999999999999998889999999999999998888888999999999999999988888899999999999
Q ss_pred CCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchH
Q 013189 306 ADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKR 385 (448)
Q Consensus 306 ah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~ 385 (448)
||+|++++|...++.++..+ +..+|+++||||++.++..++..++.++..+.+.........+.+.+..++...|.
T Consensus 158 ah~ll~~~~~~~i~~il~~l----~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 233 (456)
T PRK10590 158 ADRMLDMGFIHDIRRVLAKL----PAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKR 233 (456)
T ss_pred HHHHhccccHHHHHHHHHhC----CccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHH
Confidence 99999999999999999988 77889999999999999999999999999888877666777888888888877777
Q ss_pred HHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 386 SHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 386 ~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
..|..++.... ..++||||+++..|+.|++.|...++++..+||+|++.+|.+++
T Consensus 234 ~~l~~l~~~~~-------~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l 288 (456)
T PRK10590 234 ELLSQMIGKGN-------WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRAL 288 (456)
T ss_pred HHHHHHHHcCC-------CCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH
Confidence 76666665432 56799999999999999999999999999999999999999876
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.1e-49 Score=413.01 Aligned_cols=291 Identities=35% Similarity=0.546 Sum_probs=258.5
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013189 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
.+|++++|++.|+++|.++||.+|||+|+++||.++.|+|++++||||||||++|++|+++.++...... ......+
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~---~~~~~~~ 85 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA---DRKPEDP 85 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccc---ccccCCc
Confidence 3699999999999999999999999999999999999999999999999999999999999887543111 1122357
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcc-cccCCCeeEEEE
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMIRYLAL 303 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~-~~~l~~v~~lVl 303 (448)
++|||+||+|||.|+++.+++|....++++..++||.....+...+..+++|||+||++|++++.+. .+.+..+++|||
T Consensus 86 raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 86 RALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEe
Confidence 8999999999999999999999988899999999999999998888889999999999999999875 467899999999
Q ss_pred ecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccc
Q 013189 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~ 383 (448)
||||+|++++|..++..|+..+.. ...+|+++||||++..+..++..++.++..+.+.........+.|.+..+...+
T Consensus 166 DEAh~lld~gf~~~i~~il~~lp~--~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~ 243 (572)
T PRK04537 166 DEADRMFDLGFIKDIRFLLRRMPE--RGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEE 243 (572)
T ss_pred cCHHHHhhcchHHHHHHHHHhccc--ccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHH
Confidence 999999999999999999998821 126899999999999999999999998887777666666677888888888888
Q ss_pred hHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 384 k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
|...|..++.... ..++||||+|+..|+.|++.|...++.|..|||+|++.+|++++
T Consensus 244 k~~~L~~ll~~~~-------~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il 300 (572)
T PRK04537 244 KQTLLLGLLSRSE-------GARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLL 300 (572)
T ss_pred HHHHHHHHHhccc-------CCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 8888888876532 66899999999999999999999999999999999999999876
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=8.4e-49 Score=414.95 Aligned_cols=283 Identities=37% Similarity=0.552 Sum_probs=259.9
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCC
Q 013189 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 144 ~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
..+|.+++|++.|+++|.++||.+|||+|+++||.++.++|+|++||||||||++|++|+++.+... ...
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~----------~~~ 74 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE----------LKA 74 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc----------cCC
Confidence 3569999999999999999999999999999999999999999999999999999999999887432 234
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccC-CcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEE
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lV 302 (448)
+++|||+||++||.|+++.+++|.... ++++..++||.+...+.+.+..+++|||+||++|++++.+..+++++|++||
T Consensus 75 ~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lV 154 (629)
T PRK11634 75 PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLV 154 (629)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEE
Confidence 789999999999999999999987553 7999999999999999999999999999999999999999888999999999
Q ss_pred EecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEeccc
Q 013189 303 LDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHES 382 (448)
Q Consensus 303 lDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~ 382 (448)
|||||+|++++|.+.+..|+..+ +..+|+++||||+|..+..++..|+.++..+.+.........+.|.+..+...
T Consensus 155 lDEAd~ml~~gf~~di~~Il~~l----p~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~ 230 (629)
T PRK11634 155 LDEADEMLRMGFIEDVETIMAQI----PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM 230 (629)
T ss_pred eccHHHHhhcccHHHHHHHHHhC----CCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechh
Confidence 99999999999999999999998 78899999999999999999999999998888876666777888888888888
Q ss_pred chHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 383 ~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.|...|..+|.... ..++||||+|+..|+.|++.|...|+.+.++||+|+|.+|++++
T Consensus 231 ~k~~~L~~~L~~~~-------~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il 288 (629)
T PRK11634 231 RKNEALVRFLEAED-------FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTL 288 (629)
T ss_pred hHHHHHHHHHHhcC-------CCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHH
Confidence 89899988887643 46799999999999999999999999999999999999999876
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.3e-48 Score=404.21 Aligned_cols=281 Identities=36% Similarity=0.564 Sum_probs=256.7
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013189 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
.+|.+++|++.++++|..+||.+|||+|+++||.++.|+|++++||||||||++|++|+++.+... ...+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~----------~~~~ 73 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK----------RFRV 73 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc----------cCCc
Confidence 479999999999999999999999999999999999999999999999999999999999987432 1246
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccC-CcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEE
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVl 303 (448)
++|||+||+|||.|+++.++.+.... ++++..++||.+...+...+..+++|+|+||++|.+++.++.+.++++++|||
T Consensus 74 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lVi 153 (460)
T PRK11776 74 QALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVL 153 (460)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEE
Confidence 79999999999999999999987543 78999999999999999999999999999999999999988888999999999
Q ss_pred ecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccc
Q 013189 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~ 383 (448)
||||+|++++|...+..++..+ +..+|+++||||+++.+..++..++.++..+.+.... ....+.+.+..+...+
T Consensus 154 DEad~~l~~g~~~~l~~i~~~~----~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~ 228 (460)
T PRK11776 154 DEADRMLDMGFQDAIDAIIRQA----PARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDE 228 (460)
T ss_pred ECHHHHhCcCcHHHHHHHHHhC----CcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHH
Confidence 9999999999999999999998 7889999999999999999999999999888775543 4556888888888888
Q ss_pred hHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 384 k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
|...|..++.... ..++||||+|++.|+.+++.|...++.+..+||+|++.+|++++
T Consensus 229 k~~~l~~ll~~~~-------~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l 285 (460)
T PRK11776 229 RLPALQRLLLHHQ-------PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVL 285 (460)
T ss_pred HHHHHHHHHHhcC-------CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Confidence 8888888887543 56799999999999999999999999999999999999999876
No 20
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-49 Score=381.53 Aligned_cols=286 Identities=31% Similarity=0.467 Sum_probs=255.3
Q ss_pred CcccC--CCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCC
Q 013189 146 TFAEI--DLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 146 ~f~~~--~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
.|+++ +|+++|++++..+||.++||+|..+||.+++++|+++.|+||||||+||++|+|..+.+...... ...
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~-----~~~ 79 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP-----PGQ 79 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC-----ccc
Confidence 45555 47799999999999999999999999999999999999999999999999999998865543221 113
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhccc-CCcEEEEEECCCCHHHHHHHHh-cCCcEEEeChhHHHHHHhcc--cccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQ-TGVKVVVAYGGAPINQQLRELE-RGVDILVATPGRLVDLLERA--RVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~-~~~~Ilv~TP~~L~~~l~~~--~~~l~~v~ 299 (448)
.-+|||+||||||.||++++..|... ..+++.+++||..+.+....+. ++++|+|||||||.+++++. .+++.+++
T Consensus 80 vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe 159 (567)
T KOG0345|consen 80 VGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLE 159 (567)
T ss_pred eeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccc
Confidence 45999999999999999999999765 6889999999999998887765 47999999999999999873 45677999
Q ss_pred EEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccC--cccceeEEEE
Q 013189 300 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGS--STDLIVQRVE 377 (448)
Q Consensus 300 ~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~--~~~~i~q~~~ 377 (448)
+|||||||++++|||..++..|+..| |+.|+|=+||||.+.++.+|++..++|++.+.|..... ++..+..+|.
T Consensus 160 ~LVLDEADrLldmgFe~~~n~ILs~L----PKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~ 235 (567)
T KOG0345|consen 160 ILVLDEADRLLDMGFEASVNTILSFL----PKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYL 235 (567)
T ss_pred eEEecchHhHhcccHHHHHHHHHHhc----ccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceee
Confidence 99999999999999999999999999 89999999999999999999999999999999987765 6666777889
Q ss_pred EecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC--CCCeEEecCCCCHHHHHHHh
Q 013189 378 FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 378 ~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~--g~~~~~iHg~~~q~eR~~~l 447 (448)
.|+...|...|+++|.... .+++|||..|+..++.....|... .+++.+|||.|+|..|.+++
T Consensus 236 v~~a~eK~~~lv~~L~~~~-------~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~ 300 (567)
T KOG0345|consen 236 VCEADEKLSQLVHLLNNNK-------DKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVL 300 (567)
T ss_pred EecHHHHHHHHHHHHhccc-------cccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHH
Confidence 9999999999999999854 778999999999999999988654 78899999999999998876
No 21
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-50 Score=373.41 Aligned_cols=281 Identities=30% Similarity=0.507 Sum_probs=264.0
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013189 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
..|+++.|.++|+..+.+.||++|+|+|.++||+++.|+|+++.|..|+|||.+|++|+|..+.. .....
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~----------~~~~I 154 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP----------KKNVI 154 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc----------cccce
Confidence 57999999999999999999999999999999999999999999999999999999999988743 34457
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEe
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 304 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlD 304 (448)
+++|++||||||.|+...++.+++..++++.+.+||++..+++-.+...++++|+||||++|+++++--.++.+.++|+|
T Consensus 155 Q~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~D 234 (459)
T KOG0326|consen 155 QAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMD 234 (459)
T ss_pred eEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEec
Confidence 79999999999999999999999999999999999999999998899999999999999999999988899999999999
Q ss_pred cCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccch
Q 013189 305 EADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDK 384 (448)
Q Consensus 305 Eah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k 384 (448)
|||.||+..|.+.+..++..+ |+.+|++++|||||-.|..+...+|++|..+.. ..+.++..++|+|.+|++..|
T Consensus 235 EADKlLs~~F~~~~e~li~~l----P~~rQillySATFP~tVk~Fm~~~l~kPy~INL-M~eLtl~GvtQyYafV~e~qK 309 (459)
T KOG0326|consen 235 EADKLLSVDFQPIVEKLISFL----PKERQILLYSATFPLTVKGFMDRHLKKPYEINL-MEELTLKGVTQYYAFVEERQK 309 (459)
T ss_pred hhhhhhchhhhhHHHHHHHhC----CccceeeEEecccchhHHHHHHHhccCcceeeh-hhhhhhcchhhheeeechhhh
Confidence 999999999999999999999 999999999999999999999999999998876 356788899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 385 RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 385 ~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
..+|-.++.... -.+.|||||+...++.||..+.+.|+.|..+|+.|-|+.|.++.
T Consensus 310 vhCLntLfskLq-------INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVF 365 (459)
T KOG0326|consen 310 VHCLNTLFSKLQ-------INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVF 365 (459)
T ss_pred hhhHHHHHHHhc-------ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhh
Confidence 999999888775 34589999999999999999999999999999999999999874
No 22
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-49 Score=385.38 Aligned_cols=299 Identities=30% Similarity=0.444 Sum_probs=258.2
Q ss_pred cCCCCcccCCCCHHHHHHHH-HCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCC
Q 013189 142 PAVNTFAEIDLGEALNLNIR-RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSR 220 (448)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~l~-~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~ 220 (448)
-.-..|.+++|++.|...|. .+++..||.+|+++||.+++|+|++|.+|||||||++|++|+++.|..... +-.+
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~----ki~R 208 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEP----KIQR 208 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCc----cccc
Confidence 34468999999999999998 779999999999999999999999999999999999999999999986543 2457
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHhcc-cCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcc-cccCCCe
Q 013189 221 TVYPLALILAPTRELSSQIHVEAKKFSY-QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMI 298 (448)
Q Consensus 221 ~~~~~~lil~PtreLa~qi~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~-~~~l~~v 298 (448)
..++.+|||+||||||.|+|+.+.++.. ..++-.++++||.....+...|++|++|||+|||||+|+|.+. .+.++.+
T Consensus 209 s~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~L 288 (708)
T KOG0348|consen 209 SDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRL 288 (708)
T ss_pred cCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeee
Confidence 8899999999999999999999999974 4578889999999999999999999999999999999999885 5688999
Q ss_pred eEEEEecCCccCcCCCHHHHHHHHHHcCCCC---------CCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccc----
Q 013189 299 RYLALDEADRMLDMGFEPQIRKIVQQMDMPP---------PGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRV---- 365 (448)
Q Consensus 299 ~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~---------~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~---- 365 (448)
+||||||||+|+++||+.+|..|++.+.... |..+|.|++|||+++.|.+|+...|+||+.|..+..
T Consensus 289 RwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~ 368 (708)
T KOG0348|consen 289 RWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQL 368 (708)
T ss_pred eEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhc
Confidence 9999999999999999999999999884311 234799999999999999999999999999883211
Q ss_pred ---------------------cCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHH
Q 013189 366 ---------------------GSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWL 424 (448)
Q Consensus 366 ---------------------~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L 424 (448)
...++.+.|+|..|+..-+.-+|..+|........ ..++|||+.+.+.++.-++.|
T Consensus 369 ~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~---~qk~iVF~S~~d~VeFHy~lf 445 (708)
T KOG0348|consen 369 NPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEE---KQKMIVFFSCSDSVEFHYSLF 445 (708)
T ss_pred CcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhh---hceeEEEEechhHHHHHHHHH
Confidence 12345677899999999888888888877644322 558999999999999888877
Q ss_pred HH----------------------CCCCeEEecCCCCHHHHHHHh
Q 013189 425 YM----------------------NGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 425 ~~----------------------~g~~~~~iHg~~~q~eR~~~l 447 (448)
.. .+.+..-+||.|+|++|..++
T Consensus 446 ~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f 490 (708)
T KOG0348|consen 446 SEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVF 490 (708)
T ss_pred HhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHH
Confidence 53 245678899999999998775
No 23
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-49 Score=369.02 Aligned_cols=286 Identities=31% Similarity=0.416 Sum_probs=260.0
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCC
Q 013189 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 144 ~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
...|..|+|++++.+.++.+++.+|||+|+.|||.|+.|+|++-||.||||||++|.+|+|++|.+++ .+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP----------~g 75 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP----------YG 75 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC----------Cc
Confidence 46799999999999999999999999999999999999999999999999999999999999997664 34
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcc----cccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA----RVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~----~~~l~~v~ 299 (448)
..+||++||||||.|+.+.|..+.+..++++.+++||++.-.|...|.+.+||||+|||||.+++..+ ...+++++
T Consensus 76 iFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlk 155 (442)
T KOG0340|consen 76 IFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLK 155 (442)
T ss_pred ceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhcee
Confidence 57999999999999999999999999999999999999999999999999999999999999999875 23589999
Q ss_pred EEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcC--cEEEEeccccCcccceeEEEE
Q 013189 300 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN--YIFLAVGRVGSSTDLIVQRVE 377 (448)
Q Consensus 300 ~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~--~~~i~v~~~~~~~~~i~q~~~ 377 (448)
|+|+||||+|++..|.+++..|++-+ |..+|+++||||+++.++++..-...+ ..+..+....+..+.+.|.|.
T Consensus 156 flVlDEADrvL~~~f~d~L~~i~e~l----P~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI 231 (442)
T KOG0340|consen 156 FLVLDEADRVLAGCFPDILEGIEECL----PKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYI 231 (442)
T ss_pred eEEecchhhhhccchhhHHhhhhccC----CCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhhee
Confidence 99999999999999999999999888 778999999999999999987766665 344555555667788999999
Q ss_pred EecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 378 FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 378 ~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+....|...|+.+|...... ..+.++||++|..+|+.|+..|...++.+.++|+.|+|.||..+|
T Consensus 232 ~~~~~vkdaYLv~~Lr~~~~~----~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aL 297 (442)
T KOG0340|consen 232 LVSIDVKDAYLVHLLRDFENK----ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAAL 297 (442)
T ss_pred ecchhhhHHHHHHHHhhhhhc----cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHH
Confidence 999999999999999887542 256799999999999999999999999999999999999999876
No 24
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-49 Score=412.18 Aligned_cols=300 Identities=41% Similarity=0.662 Sum_probs=278.0
Q ss_pred cccCCCCCCcCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhc
Q 013189 133 VETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQY 212 (448)
Q Consensus 133 v~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~ 212 (448)
+.+.+...|.|+.+|...+++..++..++++||.+|||||.+|||+|++|+|||.+|.||||||++|+||++.++...+.
T Consensus 353 i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~ 432 (997)
T KOG0334|consen 353 IKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP 432 (997)
T ss_pred eeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999976655443
Q ss_pred ccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhccc
Q 013189 213 VQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR 292 (448)
Q Consensus 213 ~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~ 292 (448)
. ....+|.+||++|||||+.||++.+++|+..++++++++|||..+.+|+..+.+++.|+|||||+.++++-.+.
T Consensus 433 ~-----~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~ 507 (997)
T KOG0334|consen 433 L-----EEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANS 507 (997)
T ss_pred h-----hhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcC
Confidence 2 23458999999999999999999999999999999999999999999999999999999999999999985433
Q ss_pred ---ccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcc
Q 013189 293 ---VSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSST 369 (448)
Q Consensus 293 ---~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~ 369 (448)
.++.++.|||+||||+|++++|.|++-.|++.+ +..+|+++||||||..+..++...++.|+.+.++-...-.
T Consensus 508 grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nl----rpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~ 583 (997)
T KOG0334|consen 508 GRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNL----RPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVC 583 (997)
T ss_pred CccccccccceeeechhhhhheeccCcccchHHhhc----chhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEe
Confidence 356777799999999999999999999999999 8899999999999999999999999999999998777778
Q ss_pred cceeEEEEEec-ccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 370 DLIVQRVEFVH-ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 370 ~~i~q~~~~~~-~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
..+.|.+..+. +.+|+..|+++|..... ..++||||...+.|+.|.+.|...|++|..+||+.+|.+|...|
T Consensus 584 k~V~q~v~V~~~e~eKf~kL~eLl~e~~e------~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti 656 (997)
T KOG0334|consen 584 KEVTQVVRVCAIENEKFLKLLELLGERYE------DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTI 656 (997)
T ss_pred ccceEEEEEecCchHHHHHHHHHHHHHhh------cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHH
Confidence 89999999998 88999999999998864 67899999999999999999999999999999999999998765
No 25
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=9.1e-47 Score=387.87 Aligned_cols=285 Identities=32% Similarity=0.497 Sum_probs=253.6
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCce
Q 013189 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPL 225 (448)
Q Consensus 146 ~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~ 225 (448)
+|++++|++.+++.+.++||.+|+++|.++||.++.|+|++++||||+|||++|++|+++.++.... .....++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~------~~~~~~~ 75 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR------RKSGPPR 75 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc------cCCCCce
Confidence 6999999999999999999999999999999999999999999999999999999999998875321 1123468
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEec
Q 013189 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDE 305 (448)
Q Consensus 226 ~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDE 305 (448)
+|||+||+|||.|+++.+..++...++++..++||.....+...+..+++|||+||++|++++....+++.++++|||||
T Consensus 76 ~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDE 155 (434)
T PRK11192 76 ILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDE 155 (434)
T ss_pred EEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEEC
Confidence 99999999999999999999998889999999999999988888888899999999999999999888999999999999
Q ss_pred CCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCCh-HHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecc-cc
Q 013189 306 ADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK-EIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE-SD 383 (448)
Q Consensus 306 ah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~-~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~-~~ 383 (448)
||+|++++|...+..|...+ +..+|+++||||++. .+..++..++.+++.+.+.........+.+.+..++. ..
T Consensus 156 ah~~l~~~~~~~~~~i~~~~----~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~ 231 (434)
T PRK11192 156 ADRMLDMGFAQDIETIAAET----RWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEH 231 (434)
T ss_pred HHHHhCCCcHHHHHHHHHhC----ccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHH
Confidence 99999999999999999888 567899999999985 5888888899999988877666666778887776654 45
Q ss_pred hHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 384 k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
|...|..++.... ..++||||++++.|+.|+..|...++.+..+||+|++.+|.+++
T Consensus 232 k~~~l~~l~~~~~-------~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l 288 (434)
T PRK11192 232 KTALLCHLLKQPE-------VTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAI 288 (434)
T ss_pred HHHHHHHHHhcCC-------CCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHH
Confidence 6666666665422 56899999999999999999999999999999999999999875
No 26
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-48 Score=370.65 Aligned_cols=289 Identities=29% Similarity=0.413 Sum_probs=260.6
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013189 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
.+|++++|++.|++++.++||.+||-+|..+||.++.|+|+++.|.||||||++|++|+|+.++..... .....+|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t----~~~e~~~ 94 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKT----NDGEQGP 94 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhc----ccccccc
Confidence 589999999999999999999999999999999999999999999999999999999999999986532 1345689
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCC--cEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhccc-ccCCCeeEE
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTG--VKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR-VSLQMIRYL 301 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~--~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~-~~l~~v~~l 301 (448)
.++||+||+|||.|++.++.++...+. +++.-+...++.......|...++|+|+||++|+.++..+. ..+..+++|
T Consensus 95 sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~L 174 (569)
T KOG0346|consen 95 SAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFL 174 (569)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeE
Confidence 999999999999999999999875543 56666666666666667888889999999999999998876 678999999
Q ss_pred EEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCc-ccceeEEEEEec
Q 013189 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSS-TDLIVQRVEFVH 380 (448)
Q Consensus 302 VlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~-~~~i~q~~~~~~ 380 (448)
|+||||.|+..||++++..|..++ |...|.++||||++++|+.|-..+|++|+.+.+...+.+ .+.+.|+++.|.
T Consensus 175 VvDEADLllsfGYeedlk~l~~~L----Pr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs 250 (569)
T KOG0346|consen 175 VVDEADLLLSFGYEEDLKKLRSHL----PRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS 250 (569)
T ss_pred EechhhhhhhcccHHHHHHHHHhC----CchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec
Confidence 999999999999999999999999 889999999999999999999999999999988766654 467889999999
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 381 ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 381 ~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+.+|...++.+++.... .+++||||||...|-.|.-+|+.-|++...+.|+|++.-|-.+|
T Consensus 251 e~DKflllyallKL~LI------~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii 311 (569)
T KOG0346|consen 251 EEDKFLLLYALLKLRLI------RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHII 311 (569)
T ss_pred cchhHHHHHHHHHHHHh------cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHH
Confidence 99999999999987543 67899999999999999999999999999999999999998776
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.7e-45 Score=376.84 Aligned_cols=293 Identities=36% Similarity=0.526 Sum_probs=258.5
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCC
Q 013189 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (448)
Q Consensus 143 ~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 222 (448)
....|.+++|++.|.++|.++||..|+++|.++|+.++.|+|++++++||||||++|++|+++.+....... .....
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~---~~~~~ 161 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK---ERYMG 161 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccc---ccccC
Confidence 346799999999999999999999999999999999999999999999999999999999999987643211 11122
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhc-CCcEEEeChhHHHHHHhcccccCCCeeEE
Q 013189 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYL 301 (448)
Q Consensus 223 ~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~~l 301 (448)
.+++|||+||++||.|+++.++.+....++++..++||.....+.+.+.. .++|||+||++|++++..+...++++++|
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~l 241 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVM 241 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceE
Confidence 57899999999999999999999998889999999999988888777754 58999999999999998888889999999
Q ss_pred EEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecc
Q 013189 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE 381 (448)
Q Consensus 302 VlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~ 381 (448)
||||||++++++|.+++..|+..+.. ...+|+++||||++.++..++..++.++..+.+.........+.+.+..+..
T Consensus 242 ViDEah~l~~~~~~~~l~~i~~~~~~--~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 319 (475)
T PRK01297 242 VLDEADRMLDMGFIPQVRQIIRQTPR--KEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG 319 (475)
T ss_pred EechHHHHHhcccHHHHHHHHHhCCC--CCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecc
Confidence 99999999999999999999988732 2357999999999999999999999999888877666666778888888888
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 382 ~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+|...|.+++.... ..++||||+++++|+.+++.|...++.+..+||++++++|.+++
T Consensus 320 ~~k~~~l~~ll~~~~-------~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~ 378 (475)
T PRK01297 320 SDKYKLLYNLVTQNP-------WERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTL 378 (475)
T ss_pred hhHHHHHHHHHHhcC-------CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHH
Confidence 888888888876532 56899999999999999999999999999999999999998875
No 28
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-46 Score=353.45 Aligned_cols=281 Identities=34% Similarity=0.505 Sum_probs=260.7
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCC
Q 013189 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 144 ~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
+.+|++++|++.|+..|...||.+|+.+|+.||+.+..|.|+++++++|+|||.+|++++++.+-.. ...
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~----------~ke 94 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS----------VKE 94 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc----------hHH
Confidence 4589999999999999999999999999999999999999999999999999999999999987332 234
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHH-hcCCcEEEeChhHHHHHHhcccccCCCeeEEE
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL-ERGVDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l-~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lV 302 (448)
++||+++||||||.|++...+.+....++++..+.||.....+...+ ..+++|+|+|||++.+++....+....++++|
T Consensus 95 ~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfv 174 (397)
T KOG0327|consen 95 TQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFV 174 (397)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEe
Confidence 67999999999999999999999999999999999999988555444 44699999999999999999888889999999
Q ss_pred EecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEeccc
Q 013189 303 LDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHES 382 (448)
Q Consensus 303 lDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~ 382 (448)
+||||.|+..||.++|..|++++ +.+.|++++|||+|.++..+.+.|+.+|+.+.+...+.+.+.+.|+|..+...
T Consensus 175 lDEaDEmLs~gfkdqI~~if~~l----p~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~ 250 (397)
T KOG0327|consen 175 LDEADEMLSRGFKDQIYDIFQEL----PSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKE 250 (397)
T ss_pred ecchHhhhccchHHHHHHHHHHc----CcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeecccc
Confidence 99999999999999999999999 88899999999999999999999999999999999999999999999999888
Q ss_pred chHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 383 ~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.|...|.++.. . -...+|||||++.++.|...|...++.+.++||+|.|.+|..++
T Consensus 251 ~k~~~l~dl~~-~--------~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~ 306 (397)
T KOG0327|consen 251 EKLDTLCDLYR-R--------VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLM 306 (397)
T ss_pred ccccHHHHHHH-h--------hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHH
Confidence 89999999998 2 34589999999999999999999999999999999999998775
No 29
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-46 Score=369.50 Aligned_cols=298 Identities=27% Similarity=0.425 Sum_probs=250.9
Q ss_pred cCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcC-CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCC---C
Q 013189 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRP---R 217 (448)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~---~ 217 (448)
..++.|..|.|+..++++|..+||..||+||..+||.+..| .|++-.|.||||||+||.|||+..+.+....... .
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 45667889999999999999999999999999999999988 8999999999999999999999977764332211 1
Q ss_pred CCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccc---c
Q 013189 218 GSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV---S 294 (448)
Q Consensus 218 ~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~---~ 294 (448)
..+...|.+||++||||||.||...+..++..+++++..++||..+..|.+.|...++|+|||||||+.++..+.. .
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence 1222334599999999999999999999999999999999999999999999999999999999999999987554 6
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcC-CCCCCCceEEEEeccCCh---------------------HHHHHHHH
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMD-MPPPGMRQTMLFSATFPK---------------------EIQRLASD 352 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~-~~~~~~~q~i~~SAT~~~---------------------~v~~l~~~ 352 (448)
++.|++|||||||+|++.|+.+.+..|++.|+ .+....+|+++||||++- .++.|+..
T Consensus 338 ~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ 417 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKK 417 (731)
T ss_pred hhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHH
Confidence 78999999999999999998899999999996 455667899999999742 23444443
Q ss_pred h--hcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 353 F--LANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 353 ~--l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
. ..+|.++...+...+...+......|...+|.-.|+-+|..+ +++||||||++..+..|+-+|...+++
T Consensus 418 ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--------PGrTlVF~NsId~vKRLt~~L~~L~i~ 489 (731)
T KOG0347|consen 418 IGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY--------PGRTLVFCNSIDCVKRLTVLLNNLDIP 489 (731)
T ss_pred hCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec--------CCceEEEechHHHHHHHHHHHhhcCCC
Confidence 2 235666666666666666666666677777777776666655 788999999999999999999999999
Q ss_pred eEEecCCCCHHHHHHHh
Q 013189 431 ATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 431 ~~~iHg~~~q~eR~~~l 447 (448)
...+|+.|.|.+|.+.|
T Consensus 490 p~~LHA~M~QKqRLknL 506 (731)
T KOG0347|consen 490 PLPLHASMIQKQRLKNL 506 (731)
T ss_pred CchhhHHHHHHHHHHhH
Confidence 99999999999998876
No 30
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-45 Score=349.89 Aligned_cols=283 Identities=33% Similarity=0.507 Sum_probs=265.0
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCC
Q 013189 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 144 ~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
...|..++|+..++++|.+.||..|||+|++.||.++.++|++..+-||||||+||++|+++++.... ..+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s---------~~g 90 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS---------QTG 90 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc---------ccc
Confidence 46899999999999999999999999999999999999999999999999999999999999987542 446
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEE
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVl 303 (448)
.+++|++|||||+.|..+.++.++..++++..+++||..+.+|...+..++|||+||||+++.+.-...+.|+.|.|||+
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeee
Confidence 78999999999999999999999999999999999999999999999999999999999999988777788999999999
Q ss_pred ecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccc
Q 013189 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~ 383 (448)
||||+|++|||.+++.+++..+ +..+|+++||||+|..+-.+++.-+.+|+.+.++......+.+...+..+...+
T Consensus 171 dEadrlfemgfqeql~e~l~rl----~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~ 246 (529)
T KOG0337|consen 171 DEADRLFEMGFQEQLHEILSRL----PESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE 246 (529)
T ss_pred hhhhHHHhhhhHHHHHHHHHhC----CCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH
Confidence 9999999999999999999999 888999999999999999999999999999998777777777888888999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHH
Q 013189 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSI 445 (448)
Q Consensus 384 k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~ 445 (448)
|..+|+.++..... ..+++|||.|+.+++.+...|+..|+.+..|.|.|+|.-|+.
T Consensus 247 K~aaLl~il~~~~~------~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~ 302 (529)
T KOG0337|consen 247 KEAALLSILGGRIK------DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKI 302 (529)
T ss_pred HHHHHHHHHhcccc------ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhh
Confidence 99999999988752 567999999999999999999999999999999999999974
No 31
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=8.5e-43 Score=355.04 Aligned_cols=284 Identities=30% Similarity=0.445 Sum_probs=249.7
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCC
Q 013189 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (448)
Q Consensus 143 ~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 222 (448)
...+|++++|++.+.+++..++|..|+|+|.++|+.+++++|++++||||||||++|++|+++.+... ..
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~----------~~ 95 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD----------LN 95 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC----------CC
Confidence 35789999999999999999999999999999999999999999999999999999999999876321 23
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEE
Q 013189 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 223 ~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lV 302 (448)
.+++|||+||++|+.|+.+.+..++....+.+..++|+.....+...+..+++|+|+||++|.+++.+..+.++++++||
T Consensus 96 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvV 175 (401)
T PTZ00424 96 ACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFI 175 (401)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEE
Confidence 46799999999999999999999988788889999999998888888888899999999999999988888899999999
Q ss_pred EecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecc-
Q 013189 303 LDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE- 381 (448)
Q Consensus 303 lDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~- 381 (448)
|||||++++.+|...+..++..+ +...|++++|||++.++..+...++.++..+.+.........+.+.+..+..
T Consensus 176 iDEah~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (401)
T PTZ00424 176 LDEADEMLSRGFKGQIYDVFKKL----PPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKE 251 (401)
T ss_pred EecHHHHHhcchHHHHHHHHhhC----CCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChH
Confidence 99999999999999999998888 6778999999999999999999999988887776656666777777766654
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 382 ~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
..+...+.+++.... ..++||||+|+++|+.+++.|...++.+..+||++++.+|+.++
T Consensus 252 ~~~~~~l~~~~~~~~-------~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~ 310 (401)
T PTZ00424 252 EWKFDTLCDLYETLT-------ITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIM 310 (401)
T ss_pred HHHHHHHHHHHHhcC-------CCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHH
Confidence 335555665554432 46799999999999999999999999999999999999999875
No 32
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-44 Score=338.33 Aligned_cols=287 Identities=29% Similarity=0.424 Sum_probs=252.4
Q ss_pred CCCCCcCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcC--CCeeEeccCCCCcchhhhhhHHHHHhhhhccc
Q 013189 137 GENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQ 214 (448)
Q Consensus 137 ~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~ 214 (448)
++...-.+.+|++|.|+++|++.|..++|.+|+.+|..++|.++.. +|+|++++.|+|||+||.|.+|.++.-
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~----- 156 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP----- 156 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc-----
Confidence 4444456789999999999999999999999999999999999864 899999999999999999999988743
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhc-ccc
Q 013189 215 RPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARV 293 (448)
Q Consensus 215 ~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~-~~~ 293 (448)
....|++|+|+||||||.|+.+.+.+.++++++......-|..... -..+ ..+|+|+|||.++|++.. ..+
T Consensus 157 -----~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~r-G~~i--~eqIviGTPGtv~Dlm~klk~i 228 (477)
T KOG0332|consen 157 -----DVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKR-GNKL--TEQIVIGTPGTVLDLMLKLKCI 228 (477)
T ss_pred -----cccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccccc-CCcc--hhheeeCCCccHHHHHHHHHhh
Confidence 3456889999999999999999999999998888888776652110 0111 147999999999999988 677
Q ss_pred cCCCeeEEEEecCCccCc-CCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccce
Q 013189 294 SLQMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLI 372 (448)
Q Consensus 294 ~l~~v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i 372 (448)
++..++++|+||||.|++ .||.++-..|...+ |...|+|+||||+...+..++..++.++..+.+.+....+++|
T Consensus 229 d~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~l----P~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~I 304 (477)
T KOG0332|consen 229 DLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSL----PRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNI 304 (477)
T ss_pred ChhhceEEEecchhhhhhcccccccchhhhhhc----CCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccch
Confidence 899999999999999997 57999999999888 7889999999999999999999999999999999999999999
Q ss_pred eEEEEEec-ccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 373 VQRVEFVH-ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 373 ~q~~~~~~-~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.|+|..|. ..+|+..|.++..... -+++||||.|+..|..|+..|...|+.|.++||+|+-++|.+++
T Consensus 305 kQlyv~C~~~~~K~~~l~~lyg~~t-------igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii 373 (477)
T KOG0332|consen 305 KQLYVLCACRDDKYQALVNLYGLLT-------IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAII 373 (477)
T ss_pred hhheeeccchhhHHHHHHHHHhhhh-------hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHH
Confidence 99999985 4678888888655543 56799999999999999999999999999999999999999876
No 33
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=8e-44 Score=354.85 Aligned_cols=290 Identities=28% Similarity=0.426 Sum_probs=259.0
Q ss_pred CCCCCCcCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccC
Q 013189 136 SGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR 215 (448)
Q Consensus 136 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~ 215 (448)
+++..+.....|+++-|...++..|+..+|..||++|..|||.++.+.|+||+|..|+|||++|.+.+++.+
T Consensus 16 s~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl-------- 87 (980)
T KOG4284|consen 16 SIDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESL-------- 87 (980)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhc--------
Confidence 344455566789999999999999999999999999999999999999999999999999999999988876
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc-cCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhccccc
Q 013189 216 PRGSRTVYPLALILAPTRELSSQIHVEAKKFSY-QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVS 294 (448)
Q Consensus 216 ~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~ 294 (448)
..+...++++||+||||+|.||++.+.+++. ..+.++.+++||+........|.. ++|+|+|||||..+++.+.++
T Consensus 88 --~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n 164 (980)
T KOG4284|consen 88 --DSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMN 164 (980)
T ss_pred --CcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCC
Confidence 3446678999999999999999999999984 678999999999998877776655 799999999999999999999
Q ss_pred CCCeeEEEEecCCccCcC-CCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCccccee
Q 013189 295 LQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIV 373 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~-gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~ 373 (448)
++.|+++||||||.|++. .|.++|..|++.| |..+|+++||||.|..+.+++.+||++|.++.....+..+-.|.
T Consensus 165 ~s~vrlfVLDEADkL~~t~sfq~~In~ii~sl----P~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~Gik 240 (980)
T KOG4284|consen 165 MSHVRLFVLDEADKLMDTESFQDDINIIINSL----PQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIK 240 (980)
T ss_pred ccceeEEEeccHHhhhchhhHHHHHHHHHHhc----chhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechh
Confidence 999999999999999994 5999999999999 99999999999999999999999999999999988888888899
Q ss_pred EEEEEeccc--------chHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHH
Q 013189 374 QRVEFVHES--------DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSI 445 (448)
Q Consensus 374 q~~~~~~~~--------~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~ 445 (448)
|++..+... .|..+|-.++.... -.++||||+....|+-++.+|...|++|.+|.|.|+|.+|..
T Consensus 241 Qyv~~~~s~nnsveemrlklq~L~~vf~~ip-------y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~ 313 (980)
T KOG4284|consen 241 QYVVAKCSPNNSVEEMRLKLQKLTHVFKSIP-------YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLL 313 (980)
T ss_pred heeeeccCCcchHHHHHHHHHHHHHHHhhCc-------hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHH
Confidence 988766432 35556666665554 345899999999999999999999999999999999999987
Q ss_pred Hh
Q 013189 446 EI 447 (448)
Q Consensus 446 ~l 447 (448)
++
T Consensus 314 a~ 315 (980)
T KOG4284|consen 314 AV 315 (980)
T ss_pred HH
Confidence 64
No 34
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-41 Score=304.22 Aligned_cols=265 Identities=29% Similarity=0.440 Sum_probs=235.3
Q ss_pred cccCCCCCCcCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhc
Q 013189 133 VETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQY 212 (448)
Q Consensus 133 v~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~ 212 (448)
.+..|.++....+.|.++-|+++|+++|..+||..|+.+|.++||...-|.|++++|..|.|||++|.+..|+.+-
T Consensus 30 ~d~kgsyv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie---- 105 (387)
T KOG0329|consen 30 KDKKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE---- 105 (387)
T ss_pred ccccCcEEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC----
Confidence 3456777777788999999999999999999999999999999999999999999999999999999999998772
Q ss_pred ccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc-ccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcc
Q 013189 213 VQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS-YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA 291 (448)
Q Consensus 213 ~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~ 291 (448)
+......+||+|.|||||-||..+..+|+ +.+.+++.+.+||.++......+.+-|+|+|+||||++.+.++.
T Consensus 106 ------pv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k 179 (387)
T KOG0329|consen 106 ------PVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNR 179 (387)
T ss_pred ------CCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhc
Confidence 22335679999999999999999999997 45689999999999999999999999999999999999999999
Q ss_pred cccCCCeeEEEEecCCccCcC-CCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccc-cCcc
Q 013189 292 RVSLQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRV-GSST 369 (448)
Q Consensus 292 ~~~l~~v~~lVlDEah~ll~~-gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~-~~~~ 369 (448)
.+++++++++||||||.|+++ ..+.++..|+..- |...|+++||||++++++..|+.||.||+.++++.. ..++
T Consensus 180 ~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~t----p~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtL 255 (387)
T KOG0329|consen 180 SLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMT----PHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTL 255 (387)
T ss_pred cCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcC----cccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhh
Confidence 999999999999999999874 3455566666554 889999999999999999999999999999998765 4577
Q ss_pred cceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHH
Q 013189 370 DLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGAD 418 (448)
Q Consensus 370 ~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~ 418 (448)
..+.|+|...++.+|...|.++|..... .+++||+.+.....
T Consensus 256 HGLqQ~YvkLke~eKNrkl~dLLd~LeF-------NQVvIFvKsv~Rl~ 297 (387)
T KOG0329|consen 256 HGLQQYYVKLKENEKNRKLNDLLDVLEF-------NQVVIFVKSVQRLS 297 (387)
T ss_pred hhHHHHHHhhhhhhhhhhhhhhhhhhhh-------cceeEeeehhhhhh
Confidence 8899999999999999999999988763 45899999987643
No 35
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-39 Score=323.68 Aligned_cols=302 Identities=30% Similarity=0.434 Sum_probs=263.3
Q ss_pred cccccCCCCCCcCCCCcccC----CCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHH
Q 013189 131 IPVETSGENVPPAVNTFAEI----DLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISG 206 (448)
Q Consensus 131 ~~v~~~~~~~~~~~~~f~~~----~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~ 206 (448)
..+.+.|..+|+++.+|.++ ..+..|++++...+|..|+|+|.++||.++.++|+|+|||||||||++|++|+|++
T Consensus 118 ~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~ 197 (593)
T KOG0344|consen 118 NKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQH 197 (593)
T ss_pred ceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHH
Confidence 45667899999999999985 58899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc--ccCCcEEEEEECCCCHHH-HHHHHhcCCcEEEeChhH
Q 013189 207 IMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS--YQTGVKVVVAYGGAPINQ-QLRELERGVDILVATPGR 283 (448)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~--~~~~~~~~~~~gg~~~~~-~~~~l~~~~~Ilv~TP~~ 283 (448)
+..... .+...+-+++|+.|||+||.|++.++.+|. ..+..++..+.......+ ..-.....++|+|.||-+
T Consensus 198 L~~~~~-----~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~r 272 (593)
T KOG0344|consen 198 LKDLSQ-----EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMR 272 (593)
T ss_pred HHHhhc-----ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHH
Confidence 976542 233567889999999999999999999998 556666555443322222 222233357999999999
Q ss_pred HHHHHhccc--ccCCCeeEEEEecCCccCcC-CCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEE
Q 013189 284 LVDLLERAR--VSLQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFL 360 (448)
Q Consensus 284 L~~~l~~~~--~~l~~v~~lVlDEah~ll~~-gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i 360 (448)
|..++.... +++..|.|+|+||||++++. .|..|+..|+..+.+ ++..+-+||||++..|.+++...+.+++.+
T Consensus 273 i~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s---~~i~~a~FSat~~~~VEE~~~~i~~~~~~v 349 (593)
T KOG0344|consen 273 IVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS---PDIRVALFSATISVYVEEWAELIKSDLKRV 349 (593)
T ss_pred HHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC---cchhhhhhhccccHHHHHHHHHhhccceeE
Confidence 999998865 78999999999999999999 899999999999965 456788999999999999999999999999
Q ss_pred EeccccCcccceeEEEEEe-cccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHH-HHCCCCeEEecCCC
Q 013189 361 AVGRVGSSTDLIVQRVEFV-HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWL-YMNGFPATTIHGDR 438 (448)
Q Consensus 361 ~v~~~~~~~~~i~q~~~~~-~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L-~~~g~~~~~iHg~~ 438 (448)
.++..++....+.|...++ .+..|.-.+.+++.... ..++|||+.+++.|.+|...| ...++++..|||++
T Consensus 350 ivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~-------~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~ 422 (593)
T KOG0344|consen 350 IVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGF-------KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGER 422 (593)
T ss_pred EEecchhHhhhhhhhheeeecchhHHHHHHHHHhccC-------CCCeEEEEecHHHHHHHHHHhhhccCcceeeEeccc
Confidence 9999999999999999888 56678888889888764 778999999999999999999 78899999999999
Q ss_pred CHHHHHHHh
Q 013189 439 TQQRTSIEI 447 (448)
Q Consensus 439 ~q~eR~~~l 447 (448)
+|.+|++++
T Consensus 423 ~~~qrde~~ 431 (593)
T KOG0344|consen 423 SQKQRDETM 431 (593)
T ss_pred chhHHHHHH
Confidence 999999875
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2e-38 Score=342.07 Aligned_cols=271 Identities=19% Similarity=0.223 Sum_probs=207.9
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEc
Q 013189 151 DLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA 230 (448)
Q Consensus 151 ~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~ 230 (448)
.|++.|.++|.+.||.+|+++|.++||.++.|+|+++++|||||||+||++|+|+.+.+.. .+++|||+
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~-----------~~~aL~l~ 88 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP-----------RATALYLA 88 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC-----------CcEEEEEc
Confidence 4899999999999999999999999999999999999999999999999999999886531 36799999
Q ss_pred CcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhc----ccccCCCeeEEEEecC
Q 013189 231 PTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER----ARVSLQMIRYLALDEA 306 (448)
Q Consensus 231 PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~----~~~~l~~v~~lVlDEa 306 (448)
|||||+.|++..++++. ..++++..+.|+++. .+...+.++++|||+||++|...+.. ....++++++||||||
T Consensus 89 PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEa 166 (742)
T TIGR03817 89 PTKALAADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDEC 166 (742)
T ss_pred ChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeCh
Confidence 99999999999999997 457888887777774 45566777899999999999754322 1234899999999999
Q ss_pred CccCcCCCHHHHHHHHHHcCC---CCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecc--
Q 013189 307 DRMLDMGFEPQIRKIVQQMDM---PPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE-- 381 (448)
Q Consensus 307 h~ll~~gf~~~i~~i~~~l~~---~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~-- 381 (448)
|+|.+ .|..++..++..+.. ..+...|+|+||||+++..+ ++..++.+++.+ +.....+...... +.+...
T Consensus 167 h~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~~~~-~~~~p~~~ 242 (742)
T TIGR03817 167 HSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRGARTV-ALWEPPLT 242 (742)
T ss_pred hhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCceEE-EEecCCcc
Confidence 99977 487877777666532 11346899999999998755 577777766544 3322222222222 211111
Q ss_pred ---------------cchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC--------CCCeEEecCCC
Q 013189 382 ---------------SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--------GFPATTIHGDR 438 (448)
Q Consensus 382 ---------------~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~--------g~~~~~iHg~~ 438 (448)
.++...|.+++.. ..++||||+|++.|+.++..|... +..+..+||++
T Consensus 243 ~~~~~~~~~~r~~~~~~~~~~l~~l~~~---------~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~ 313 (742)
T TIGR03817 243 ELTGENGAPVRRSASAEAADLLADLVAE---------GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGY 313 (742)
T ss_pred ccccccccccccchHHHHHHHHHHHHHC---------CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCC
Confidence 1223333333331 567999999999999999998763 67899999999
Q ss_pred CHHHHHHHh
Q 013189 439 TQQRTSIEI 447 (448)
Q Consensus 439 ~q~eR~~~l 447 (448)
++++|++++
T Consensus 314 ~~~eR~~ie 322 (742)
T TIGR03817 314 LPEDRRELE 322 (742)
T ss_pred CHHHHHHHH
Confidence 999999875
No 37
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=4.6e-37 Score=326.53 Aligned_cols=257 Identities=18% Similarity=0.156 Sum_probs=203.1
Q ss_pred CCCCCCCHHHHhHhhhHhcCC-CeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEE-EcCcHHHHHHHH
Q 013189 163 CKYVKPTPVQRHAIPISIGGR-DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALI-LAPTRELSSQIH 240 (448)
Q Consensus 163 ~~~~~pt~~Q~~~i~~i~~g~-d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~li-l~PtreLa~qi~ 240 (448)
.||. |||+|+++||.++.|+ ++++++|||||||++|.++++.. .. ....|+.|| ++||||||.|++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~----------~~~~~~rLv~~vPtReLa~Qi~ 79 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI----------GAKVPRRLVYVVNRRTVVDQVT 79 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc----------cccccceEEEeCchHHHHHHHH
Confidence 4887 9999999999999998 57788999999999776555532 11 123455666 669999999999
Q ss_pred HHHHHhcccC-----------------------CcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccc----
Q 013189 241 VEAKKFSYQT-----------------------GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV---- 293 (448)
Q Consensus 241 ~~~~~~~~~~-----------------------~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~---- 293 (448)
+.++++++.. .+++..++||.+...|+..+..+++|||+|+ |++.+..+
T Consensus 80 ~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gY 155 (844)
T TIGR02621 80 EEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGY 155 (844)
T ss_pred HHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCcccccc
Confidence 9999998644 4889999999999999999999999999995 55554443
Q ss_pred ------------cCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCC-CCCceEEEEeccCChHHHHHHHHhhcCcEEE
Q 013189 294 ------------SLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPP-PGMRQTMLFSATFPKEIQRLASDFLANYIFL 360 (448)
Q Consensus 294 ------------~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~-~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i 360 (448)
.++++++||||||| ++++|.+++..|+..+..++ ...+|+++||||++.++..++..++.++..+
T Consensus 156 g~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i 233 (844)
T TIGR02621 156 GCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKH 233 (844)
T ss_pred ccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCcee
Confidence 27889999999999 78999999999999753222 1237999999999999999988888877777
Q ss_pred EeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCH
Q 013189 361 AVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 361 ~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
.+.........+.++ ..+.+..|...++..+...... ..+++||||||++.|+.|++.|...++ ..|||+|+|
T Consensus 234 ~V~~~~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e----~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q 306 (844)
T TIGR02621 234 PVLKKRLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKD----SGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRG 306 (844)
T ss_pred ecccccccccceEEE-EecChHHHHHHHHHHHHHHHhh----CCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCH
Confidence 766555566666664 3444445555555444332211 256799999999999999999999887 899999999
Q ss_pred HHHH
Q 013189 441 QRTS 444 (448)
Q Consensus 441 ~eR~ 444 (448)
.+|+
T Consensus 307 ~dR~ 310 (844)
T TIGR02621 307 AERD 310 (844)
T ss_pred HHHh
Confidence 9999
No 38
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-35 Score=288.98 Aligned_cols=287 Identities=28% Similarity=0.371 Sum_probs=230.1
Q ss_pred CCcccCCCCHHHHH----------HHHHCCCCCCCHHHHhHhhhHhc---------CCCeeEeccCCCCcchhhhhhHHH
Q 013189 145 NTFAEIDLGEALNL----------NIRRCKYVKPTPVQRHAIPISIG---------GRDLMACAQTGSGKTAAFCFPIIS 205 (448)
Q Consensus 145 ~~f~~~~l~~~l~~----------~l~~~~~~~pt~~Q~~~i~~i~~---------g~d~li~a~TGsGKT~~~~lpil~ 205 (448)
..|..+++++.+.. ++.++++....|+|..++|.++. .+|+.|.||||||||++|.|||++
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 45667776665544 49999999999999999998852 589999999999999999999999
Q ss_pred HHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcC-----CcEEEeC
Q 013189 206 GIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERG-----VDILVAT 280 (448)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-----~~Ilv~T 280 (448)
.+.+.. ....+||||+||++|+.|+++.+.+++...++.|+.+.|..+...+.++|... .||||+|
T Consensus 207 ~L~~R~---------v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaT 277 (620)
T KOG0350|consen 207 LLSSRP---------VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVAT 277 (620)
T ss_pred HHccCC---------ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcC
Confidence 886543 22367999999999999999999999999999999999999998888888653 4999999
Q ss_pred hhHHHHHHhc-ccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCC------------------------------C
Q 013189 281 PGRLVDLLER-ARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMP------------------------------P 329 (448)
Q Consensus 281 P~~L~~~l~~-~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~------------------------------~ 329 (448)
||||+|+|.+ ..++|++++|+||||||+|++..|..-+..+..++... .
T Consensus 278 PGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~ 357 (620)
T KOG0350|consen 278 PGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKL 357 (620)
T ss_pred chHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCc
Confidence 9999999986 56899999999999999999876655444444433211 0
Q ss_pred CCCceEEEEeccCChHHHHHHHHhhcCcE-EEEec---cccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCc
Q 013189 330 PGMRQTMLFSATFPKEIQRLASDFLANYI-FLAVG---RVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQA 405 (448)
Q Consensus 330 ~~~~q~i~~SAT~~~~v~~l~~~~l~~~~-~i~v~---~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~ 405 (448)
....+.++||||+..+-..+...-++.|. +.... -..+....+.+.+..++...|--.+..++.... ..
T Consensus 358 ~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k-------~~ 430 (620)
T KOG0350|consen 358 YPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNK-------LN 430 (620)
T ss_pred CchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhh-------cc
Confidence 22356889999998777777776677773 33332 233455666777777777788888888888764 67
Q ss_pred cEEEEeCchHHHHHHHHHHH----HCCCCeEEecCCCCHHHHHHHh
Q 013189 406 LTLVFVETKKGADALEHWLY----MNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 406 ~~IIF~~t~~~a~~l~~~L~----~~g~~~~~iHg~~~q~eR~~~l 447 (448)
++|+|+++.+.+..++..|. ..++++.++.|.+++..|...|
T Consensus 431 r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l 476 (620)
T KOG0350|consen 431 RTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKML 476 (620)
T ss_pred eEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHH
Confidence 79999999999999999886 3478888999999999998765
No 39
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.9e-34 Score=309.51 Aligned_cols=265 Identities=16% Similarity=0.227 Sum_probs=197.0
Q ss_pred CCCCHHHHHHHH-HCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEE
Q 013189 150 IDLGEALNLNIR-RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALI 228 (448)
Q Consensus 150 ~~l~~~l~~~l~-~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~li 228 (448)
++....|...++ .+||..|+|+|.++|+.++.|+|+++++|||+|||+||++|+|.. .+.+||
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~----------------~GiTLV 505 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC----------------PGITLV 505 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc----------------CCcEEE
Confidence 445566665555 579999999999999999999999999999999999999999842 135999
Q ss_pred EcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh------cCCcEEEeChhHHHH--HHhcc--cc-cCCC
Q 013189 229 LAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE------RGVDILVATPGRLVD--LLERA--RV-SLQM 297 (448)
Q Consensus 229 l~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~------~~~~Ilv~TP~~L~~--~l~~~--~~-~l~~ 297 (448)
|+|+++|+.++...+.. .++++..+.++....++...+. ..++|||+||++|.. .+.+. .+ ....
T Consensus 506 ISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~ 581 (1195)
T PLN03137 506 ISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGL 581 (1195)
T ss_pred EeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccc
Confidence 99999999876666655 3688999999998877765554 358999999999862 22211 11 2355
Q ss_pred eeEEEEecCCccCcCC--CHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhc--CcEEEEeccccCccccee
Q 013189 298 IRYLALDEADRMLDMG--FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLA--NYIFLAVGRVGSSTDLIV 373 (448)
Q Consensus 298 v~~lVlDEah~ll~~g--f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~--~~~~i~v~~~~~~~~~i~ 373 (448)
+.+|||||||++++|| |++.++.+-..... ...+|+++||||++..++..+...+. +++.+ . ......++
T Consensus 582 LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~--fp~vPilALTATAT~~V~eDI~~~L~l~~~~vf-r--~Sf~RpNL- 655 (1195)
T PLN03137 582 LARFVIDEAHCVSQWGHDFRPDYQGLGILKQK--FPNIPVLALTATATASVKEDVVQALGLVNCVVF-R--QSFNRPNL- 655 (1195)
T ss_pred cceeccCcchhhhhcccchHHHHHHHHHHHHh--CCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEe-e--cccCccce-
Confidence 8999999999999998 88988875332222 23578999999999999886666553 33222 1 11222333
Q ss_pred EEEEEecccch-HHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 374 QRVEFVHESDK-RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 374 q~~~~~~~~~k-~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+|.++....+ ...+.+++.... ....+||||+|++.|+.|++.|...|+++..|||+|++++|+.++
T Consensus 656 -~y~Vv~k~kk~le~L~~~I~~~~------~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vq 723 (1195)
T PLN03137 656 -WYSVVPKTKKCLEDIDKFIKENH------FDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQ 723 (1195)
T ss_pred -EEEEeccchhHHHHHHHHHHhcc------cCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHH
Confidence 3333433322 334555554321 145689999999999999999999999999999999999999875
No 40
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.3e-34 Score=312.21 Aligned_cols=274 Identities=20% Similarity=0.238 Sum_probs=205.7
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhh-HhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013189 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPI-SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 146 ~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
.|+++++++.+.+.+.+.||.+|+|+|.++|+. +++++|+++++|||||||++|.+|+++.+... +.
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~------------~~ 69 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE------------GG 69 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc------------CC
Confidence 578899999999999999999999999999986 78999999999999999999999999887642 24
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEe
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 304 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlD 304 (448)
++|||+|+++|+.|+++.++++. ..++++..++|+.....+ +...++|+|+||+++..++.+....+++|++||+|
T Consensus 70 ~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViD 145 (720)
T PRK00254 70 KAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVAD 145 (720)
T ss_pred eEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEc
Confidence 69999999999999999999874 358899999998765332 23458999999999999988766678999999999
Q ss_pred cCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcc--cceeEEEEEeccc
Q 013189 305 EADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSST--DLIVQRVEFVHES 382 (448)
Q Consensus 305 Eah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~--~~i~q~~~~~~~~ 382 (448)
|+|.+.+.++...+..++..+ ....|+|++|||++. ...++. ++....+....+ .... ..+.+.+....+.
T Consensus 146 E~H~l~~~~rg~~le~il~~l----~~~~qiI~lSATl~n-~~~la~-wl~~~~~~~~~r-pv~l~~~~~~~~~~~~~~~ 218 (720)
T PRK00254 146 EIHLIGSYDRGATLEMILTHM----LGRAQILGLSATVGN-AEELAE-WLNAELVVSDWR-PVKLRKGVFYQGFLFWEDG 218 (720)
T ss_pred CcCccCCccchHHHHHHHHhc----CcCCcEEEEEccCCC-HHHHHH-HhCCccccCCCC-CCcceeeEecCCeeeccCc
Confidence 999999989999999999988 456899999999975 355554 443222111100 0111 1111222222221
Q ss_pred c--h-HHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC--------------------------------
Q 013189 383 D--K-RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN-------------------------------- 427 (448)
Q Consensus 383 ~--k-~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~-------------------------------- 427 (448)
. + ...+..++..... .++++||||+|++.|+.++..|...
T Consensus 219 ~~~~~~~~~~~~~~~~i~-----~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 293 (720)
T PRK00254 219 KIERFPNSWESLVYDAVK-----KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKA 293 (720)
T ss_pred chhcchHHHHHHHHHHHH-----hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHH
Confidence 1 1 1222233332221 1568999999999999888776421
Q ss_pred -CCCeEEecCCCCHHHHHHHh
Q 013189 428 -GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 428 -g~~~~~iHg~~~q~eR~~~l 447 (448)
...+..+||+|++++|..+.
T Consensus 294 l~~gv~~hHagl~~~eR~~ve 314 (720)
T PRK00254 294 LRGGVAFHHAGLGRTERVLIE 314 (720)
T ss_pred HhhCEEEeCCCCCHHHHHHHH
Confidence 23488999999999999764
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.8e-34 Score=315.63 Aligned_cols=285 Identities=20% Similarity=0.266 Sum_probs=204.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcC
Q 013189 152 LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP 231 (448)
Q Consensus 152 l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 231 (448)
|++.+.+.+.. +|.+|||+|+++||.+++|+|++++||||||||++|++|+++.++..... .....++++|||+|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~----~~~~~~~~~LyIsP 92 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE----GELEDKVYCLYVSP 92 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc----cCCCCCeEEEEEcC
Confidence 66777777666 89999999999999999999999999999999999999999998754321 11134578999999
Q ss_pred cHHHHHHHHHHHHH-------hc----ccC-CcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccc--cCCC
Q 013189 232 TRELSSQIHVEAKK-------FS----YQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV--SLQM 297 (448)
Q Consensus 232 treLa~qi~~~~~~-------~~----~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~--~l~~ 297 (448)
|++|+.|+++.+.. ++ ... ++++.+.+|+++...+.+.+.+.++|||+||++|..++....+ .+++
T Consensus 93 traLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~ 172 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRT 172 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhc
Confidence 99999999886653 22 222 6789999999998888888888899999999999888865543 5799
Q ss_pred eeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCCh--HHHHHHHHhh----cCcEEEEeccccCcccc
Q 013189 298 IRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK--EIQRLASDFL----ANYIFLAVGRVGSSTDL 371 (448)
Q Consensus 298 v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~--~v~~l~~~~l----~~~~~i~v~~~~~~~~~ 371 (448)
+++|||||||.|++..+..++..++..+........|+|++|||+++ ++..++..+. ..+..+..... .....
T Consensus 173 l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~-~k~~~ 251 (876)
T PRK13767 173 VKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARF-VKPFD 251 (876)
T ss_pred CCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCC-Cccce
Confidence 99999999999998877777777776664433456899999999975 3332222211 11111111000 00000
Q ss_pred eeE-----EEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC------CCCeEEecCCCCH
Q 013189 372 IVQ-----RVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN------GFPATTIHGDRTQ 440 (448)
Q Consensus 372 i~q-----~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~------g~~~~~iHg~~~q 440 (448)
+.. .+...........+.+.+...... ..++||||||++.|+.++..|... +..+..+||+|++
T Consensus 252 i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~-----~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~ 326 (876)
T PRK13767 252 IKVISPVDDLIHTPAEEISEALYETLHELIKE-----HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSR 326 (876)
T ss_pred EEEeccCccccccccchhHHHHHHHHHHHHhc-----CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCH
Confidence 000 000111122233444555443321 567999999999999999999862 4689999999999
Q ss_pred HHHHHHh
Q 013189 441 QRTSIEI 447 (448)
Q Consensus 441 ~eR~~~l 447 (448)
++|..++
T Consensus 327 ~~R~~ve 333 (876)
T PRK13767 327 EVRLEVE 333 (876)
T ss_pred HHHHHHH
Confidence 9999875
No 42
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.1e-34 Score=294.37 Aligned_cols=254 Identities=17% Similarity=0.209 Sum_probs=189.0
Q ss_pred HCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013189 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~ 241 (448)
.+||.+|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. .+.+|||+||++|+.|+++
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~----------------~~~~lVi~P~~~L~~dq~~ 69 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS----------------DGITLVISPLISLMEDQVL 69 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc----------------CCcEEEEecHHHHHHHHHH
Confidence 569999999999999999999999999999999999999998841 1359999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCCHHHHHH---HHh-cCCcEEEeChhHHHHHHh-cccc-cCCCeeEEEEecCCccCcCC--
Q 013189 242 EAKKFSYQTGVKVVVAYGGAPINQQLR---ELE-RGVDILVATPGRLVDLLE-RARV-SLQMIRYLALDEADRMLDMG-- 313 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~Ilv~TP~~L~~~l~-~~~~-~l~~v~~lVlDEah~ll~~g-- 313 (448)
.++.+ ++.+..+.++....++.. .+. ..++|+|+||+++..... ...+ ....+++|||||||++++||
T Consensus 70 ~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~ 145 (470)
T TIGR00614 70 QLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHD 145 (470)
T ss_pred HHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccc
Confidence 98874 577777777776554332 222 248999999999854221 1112 57889999999999999997
Q ss_pred CHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhh--cCcEEEEeccccCcccceeEEEEEecccchHHHHHHH
Q 013189 314 FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL--ANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDL 391 (448)
Q Consensus 314 f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l--~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~l 391 (448)
|++.+..+....... +..|+++||||+++.+...+...+ .++..+.. .....++...+.. ........+.++
T Consensus 146 fr~~~~~l~~l~~~~--~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~---s~~r~nl~~~v~~-~~~~~~~~l~~~ 219 (470)
T TIGR00614 146 FRPDYKALGSLKQKF--PNVPIMALTATASPSVREDILRQLNLKNPQIFCT---SFDRPNLYYEVRR-KTPKILEDLLRF 219 (470)
T ss_pred cHHHHHHHHHHHHHc--CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC---CCCCCCcEEEEEe-CCccHHHHHHHH
Confidence 888877664333222 356899999999998877665554 34433322 1122333222211 122345556666
Q ss_pred HHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 392 LHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 392 l~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+.... .+..+||||+|+++|+.+++.|...|+.+..|||+|++++|++++
T Consensus 220 l~~~~------~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~ 269 (470)
T TIGR00614 220 IRKEF------KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVH 269 (470)
T ss_pred HHHhc------CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHH
Confidence 65322 245679999999999999999999999999999999999999875
No 43
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3e-34 Score=311.97 Aligned_cols=274 Identities=24% Similarity=0.245 Sum_probs=202.2
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhh-HhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013189 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPI-SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 146 ~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
.|++++|++.+.+.+...||.+|+|+|.++++. +..++|++++||||||||++|.+|++..+.. +.
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-------------~~ 68 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-------------GG 68 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-------------CC
Confidence 478999999999999999999999999999997 6789999999999999999999999988742 24
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEe
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 304 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlD 304 (448)
++|||+||++||.|+++.++++.. .++++..++|+...... ....++|+|+||+++..++.+....++++++||+|
T Consensus 69 kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViD 144 (737)
T PRK02362 69 KALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVD 144 (737)
T ss_pred cEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEE
Confidence 699999999999999999998754 47899999998764332 22357999999999999998766668999999999
Q ss_pred cCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcC-------cEEEEeccc--cC-cccceeE
Q 013189 305 EADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN-------YIFLAVGRV--GS-STDLIVQ 374 (448)
Q Consensus 305 Eah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~-------~~~i~v~~~--~~-~~~~i~q 374 (448)
|+|.+.+.++.+.++.++..+... ....|+|++|||++. ..+++...-.. |+.+..... .. .... .+
T Consensus 145 E~H~l~d~~rg~~le~il~rl~~~-~~~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~ 221 (737)
T PRK02362 145 EVHLIDSANRGPTLEVTLAKLRRL-NPDLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQ 221 (737)
T ss_pred CccccCCCcchHHHHHHHHHHHhc-CCCCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc-cc
Confidence 999999988999999988887543 345899999999974 23333222111 111111000 00 0000 00
Q ss_pred EEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCC--------------------------
Q 013189 375 RVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG-------------------------- 428 (448)
Q Consensus 375 ~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g-------------------------- 428 (448)
. .+....+ .....++..... .++++||||+|++.|+.++..|....
T Consensus 222 ~--~~~~~~~-~~~~~~~~~~~~-----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 293 (737)
T PRK02362 222 R--EVEVPSK-DDTLNLVLDTLE-----EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTE 293 (737)
T ss_pred c--cCCCccc-hHHHHHHHHHHH-----cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCcc
Confidence 0 1111111 122222222211 26789999999999999998886431
Q ss_pred ----------CCeEEecCCCCHHHHHHHh
Q 013189 429 ----------FPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 429 ----------~~~~~iHg~~~q~eR~~~l 447 (448)
..+..+||+|++.+|+.++
T Consensus 294 ~~~~L~~~l~~gva~hHagl~~~eR~~ve 322 (737)
T PRK02362 294 TSKDLADCVAKGAAFHHAGLSREHRELVE 322 (737)
T ss_pred ccHHHHHHHHhCEEeecCCCCHHHHHHHH
Confidence 3578899999999998764
No 44
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=8.4e-34 Score=316.11 Aligned_cols=247 Identities=23% Similarity=0.278 Sum_probs=197.0
Q ss_pred CCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013189 163 CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 163 ~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~ 242 (448)
.|+ +|+++|+.++|.++.|+|++++||||+|||+ |.++++..+.. .++++|||+|||+||.|+++.
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~------------~g~~alIL~PTreLa~Qi~~~ 142 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK------------KGKKSYIIFPTRLLVEQVVEK 142 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh------------cCCeEEEEeccHHHHHHHHHH
Confidence 366 8999999999999999999999999999996 55565544421 246799999999999999999
Q ss_pred HHHhcccCCcEEEEEECCCCH-----HHHHHHHhc-CCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCc-----
Q 013189 243 AKKFSYQTGVKVVVAYGGAPI-----NQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD----- 311 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~-----~~~~~~l~~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~----- 311 (448)
+++++...++.+.+++++... ..+...+.. .++|+|+||++|.++++ .+....+++|||||||+|++
T Consensus 143 l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 143 LEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccch
Confidence 999998888888888877642 233344454 58999999999999887 45567799999999999996
Q ss_pred ------CCCH-HHHHHHHHHcCCC--------------------CCCCceEEEEeccCChH-HHHHHHHhhcCcEEEEec
Q 013189 312 ------MGFE-PQIRKIVQQMDMP--------------------PPGMRQTMLFSATFPKE-IQRLASDFLANYIFLAVG 363 (448)
Q Consensus 312 ------~gf~-~~i~~i~~~l~~~--------------------~~~~~q~i~~SAT~~~~-v~~l~~~~l~~~~~i~v~ 363 (448)
+||. +++..++..+... .++.+|+++||||+++. +.. .++.++..+.++
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~ 297 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVG 297 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEec
Confidence 7885 6888888777320 11268999999999864 443 234455667777
Q ss_pred cccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHH---HHHHHHHHHHCCCCeEEecCCC
Q 013189 364 RVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKG---ADALEHWLYMNGFPATTIHGDR 438 (448)
Q Consensus 364 ~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~---a~~l~~~L~~~g~~~~~iHg~~ 438 (448)
.......++.|.|..+. +|...|.+++... +..+||||+|+.. |+.|+++|...|++|..+||+|
T Consensus 298 ~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l--------~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l 365 (1176)
T PRK09401 298 SPVFYLRNIVDSYIVDE--DSVEKLVELVKRL--------GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF 365 (1176)
T ss_pred CcccccCCceEEEEEcc--cHHHHHHHHHHhc--------CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH
Confidence 77677788888887665 6777888887654 3469999999887 9999999999999999999999
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=6.2e-33 Score=295.25 Aligned_cols=252 Identities=19% Similarity=0.256 Sum_probs=197.7
Q ss_pred HCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013189 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~ 241 (448)
.+||.+|+|+|.++|+.++.|+|+++++|||+|||+||++|++.. ...+|||+|+++|+.|+++
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~----------------~g~~lVisPl~sL~~dq~~ 71 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL----------------KGLTVVISPLISLMKDQVD 71 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc----------------CCcEEEEcCCHHHHHHHHH
Confidence 479999999999999999999999999999999999999998841 1248999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCC--CH
Q 013189 242 EAKKFSYQTGVKVVVAYGGAPINQQLREL----ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG--FE 315 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~g--f~ 315 (448)
.++.+ ++.+..+.++....+....+ ...++|+++||++|........+...++++|||||||++.+|| |+
T Consensus 72 ~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~fr 147 (591)
T TIGR01389 72 QLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFR 147 (591)
T ss_pred HHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccH
Confidence 99885 57788888887766544332 2358999999999975443344557789999999999999987 88
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhc--CcEEEEeccccCcccceeEEEEEecccchHHHHHHHHH
Q 013189 316 PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLA--NYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLH 393 (448)
Q Consensus 316 ~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~--~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~ 393 (448)
+.+..+.......+ ..++++||||++..+...+...+. ++..+ +. .....++ .+..+....+...+.+++.
T Consensus 148 p~y~~l~~l~~~~~--~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~--~~~r~nl--~~~v~~~~~~~~~l~~~l~ 220 (591)
T TIGR01389 148 PEYQRLGSLAERFP--QVPRIALTATADAETRQDIRELLRLADANEF-IT--SFDRPNL--RFSVVKKNNKQKFLLDYLK 220 (591)
T ss_pred HHHHHHHHHHHhCC--CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ec--CCCCCCc--EEEEEeCCCHHHHHHHHHH
Confidence 88887766553322 245999999999998877766654 33222 11 1122233 3444455567777888777
Q ss_pred HHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 394 AQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 394 ~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
... +.++||||+|++.|+.+++.|...|+++..+||+|++++|+.++
T Consensus 221 ~~~-------~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~ 267 (591)
T TIGR01389 221 KHR-------GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQ 267 (591)
T ss_pred hcC-------CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHH
Confidence 543 56799999999999999999999999999999999999999875
No 46
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.2e-32 Score=292.80 Aligned_cols=257 Identities=19% Similarity=0.210 Sum_probs=192.1
Q ss_pred HHHHH-HCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHH
Q 013189 157 NLNIR-RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTREL 235 (448)
Q Consensus 157 ~~~l~-~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL 235 (448)
.+.|+ .+||.+|+|+|+++|+.++.|+|+++++|||+|||++|++|++.. ...+|||+|+++|
T Consensus 14 ~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~----------------~g~tlVisPl~sL 77 (607)
T PRK11057 14 KQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL----------------DGLTLVVSPLISL 77 (607)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc----------------CCCEEEEecHHHH
Confidence 33443 369999999999999999999999999999999999999999842 1359999999999
Q ss_pred HHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHH---Hhc-CCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCc
Q 013189 236 SSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE---LER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD 311 (448)
Q Consensus 236 a~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~ 311 (448)
+.|+.+.++.+ ++.+..+.++.....+... +.. ..+|+|+||++|........+...++++|||||||++++
T Consensus 78 ~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~ 153 (607)
T PRK11057 78 MKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQ 153 (607)
T ss_pred HHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccccc
Confidence 99999998875 5777777777665544332 222 478999999999742222233456799999999999999
Q ss_pred CC--CHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhh--cCcEEEEeccccCcccceeEEEEEecccchHHH
Q 013189 312 MG--FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL--ANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSH 387 (448)
Q Consensus 312 ~g--f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l--~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~ 387 (448)
|| |++.+..+-...... +..|+++||||++..++..+...+ .++... +... ...++ .+..+....+...
T Consensus 154 ~G~~fr~~y~~L~~l~~~~--p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~--~r~nl--~~~v~~~~~~~~~ 226 (607)
T PRK11057 154 WGHDFRPEYAALGQLRQRF--PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSF--DRPNI--RYTLVEKFKPLDQ 226 (607)
T ss_pred ccCcccHHHHHHHHHHHhC--CCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCC--CCCcc--eeeeeeccchHHH
Confidence 87 888876664433222 357899999999998876554443 344332 2111 12233 3334444445566
Q ss_pred HHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 388 LMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 388 L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+..++.... +.++||||+|+++|+.++..|...|+++..+||+|++++|++++
T Consensus 227 l~~~l~~~~-------~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~ 279 (607)
T PRK11057 227 LMRYVQEQR-------GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQ 279 (607)
T ss_pred HHHHHHhcC-------CCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHH
Confidence 666665432 67899999999999999999999999999999999999999875
No 47
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=6.7e-33 Score=255.81 Aligned_cols=202 Identities=53% Similarity=0.815 Sum_probs=185.3
Q ss_pred cccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceE
Q 013189 147 FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLA 226 (448)
Q Consensus 147 f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~ 226 (448)
|+++++++.+.+.+.++++..|+++|+++++.+.+++|+++++|||+|||++|++|+++.+.... ...++++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~--------~~~~~~v 72 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP--------KKDGPQA 72 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc--------ccCCceE
Confidence 67899999999999999999999999999999999999999999999999999999999887652 1235789
Q ss_pred EEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecC
Q 013189 227 LILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEA 306 (448)
Q Consensus 227 lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEa 306 (448)
||++||++|+.|+...++++....++++..++|+.........+..+++|+|+||++|.+++.+....+.+++++|+||+
T Consensus 73 iii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~ 152 (203)
T cd00268 73 LILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEA 152 (203)
T ss_pred EEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeCh
Confidence 99999999999999999999887789999999999988877777778999999999999999888888999999999999
Q ss_pred CccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEE
Q 013189 307 DRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFL 360 (448)
Q Consensus 307 h~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i 360 (448)
|.+.+.+|...+..++..+ +..+|+++||||+++.+..++..++.+++++
T Consensus 153 h~~~~~~~~~~~~~~~~~l----~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 153 DRMLDMGFEDQIREILKLL----PKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHhhccChHHHHHHHHHhC----CcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 9999989999999999988 5589999999999999999999999998876
No 48
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.3e-32 Score=289.31 Aligned_cols=279 Identities=23% Similarity=0.269 Sum_probs=218.4
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcC
Q 013189 152 LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP 231 (448)
Q Consensus 152 l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 231 (448)
|++.+.+.+... |..|||.|.+|||.+.+|+|++++||||||||+++.||+|+.+.+... .....+..+|||+|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~-----~~~~~~i~~lYIsP 81 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGK-----GKLEDGIYALYISP 81 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccC-----CCCCCceEEEEeCc
Confidence 788999999986 999999999999999999999999999999999999999999998741 22344578999999
Q ss_pred cHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhccc--ccCCCeeEEEEecCCcc
Q 013189 232 TRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR--VSLQMIRYLALDEADRM 309 (448)
Q Consensus 232 treLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~--~~l~~v~~lVlDEah~l 309 (448)
.|+|..++...++.+....|+.+.+.+|+++..+..+...+.|||||+||+.|.-++...+ -.|.+|+|+||||+|.+
T Consensus 82 LkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel 161 (814)
T COG1201 82 LKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHAL 161 (814)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhh
Confidence 9999999999999999999999999999999998888888999999999999988886543 35899999999999999
Q ss_pred CcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcC--cEEEEeccccCcccceeEEEEEeccc-----
Q 013189 310 LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN--YIFLAVGRVGSSTDLIVQRVEFVHES----- 382 (448)
Q Consensus 310 l~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~--~~~i~v~~~~~~~~~i~q~~~~~~~~----- 382 (448)
.+.-...++.--++.+....+ +.|.|.+|||..+. ..+++..... +..+...... ......+......
T Consensus 162 ~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~---k~~~i~v~~p~~~~~~~~ 236 (814)
T COG1201 162 AESKRGVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAA---KKLEIKVISPVEDLIYDE 236 (814)
T ss_pred hccccchhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccC---CcceEEEEecCCcccccc
Confidence 887777777777777766555 88999999999633 3334333332 2332221111 1111122221111
Q ss_pred chHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCC-CCeEEecCCCCHHHHHHH
Q 013189 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG-FPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 383 ~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g-~~~~~iHg~~~q~eR~~~ 446 (448)
.-...+++.+...... ...||||+||+..|+.|+..|.+.+ .++...||.++.++|..+
T Consensus 237 ~~~~~~~~~i~~~v~~-----~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~v 296 (814)
T COG1201 237 ELWAALYERIAELVKK-----HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEV 296 (814)
T ss_pred chhHHHHHHHHHHHhh-----cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHH
Confidence 1223344444444322 4479999999999999999999987 899999999999999764
No 49
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=3e-32 Score=304.08 Aligned_cols=257 Identities=19% Similarity=0.289 Sum_probs=196.6
Q ss_pred HHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcH
Q 013189 154 EALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR 233 (448)
Q Consensus 154 ~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 233 (448)
.++.+.+.+....+|+++|+.++|.++.|+|++++||||+|||+ |.+|++..+.. .++++|||+|||
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~------------~g~~vLIL~PTr 131 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK------------KGKRCYIILPTT 131 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh------------cCCeEEEEeCHH
Confidence 34555566555668999999999999999999999999999997 67777665532 146799999999
Q ss_pred HHHHHHHHHHHHhcccCCcEEE---EEECCCCHHHHHH---HHhc-CCcEEEeChhHHHHHHhcccccCCCeeEEEEecC
Q 013189 234 ELSSQIHVEAKKFSYQTGVKVV---VAYGGAPINQQLR---ELER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEA 306 (448)
Q Consensus 234 eLa~qi~~~~~~~~~~~~~~~~---~~~gg~~~~~~~~---~l~~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEa 306 (448)
+||.|+++.+++++...++.+. +++||.+..++.. .+.+ +++|||+||++|.+.+.... . .++++|||||
T Consensus 132 eLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEa 208 (1171)
T TIGR01054 132 LLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDV 208 (1171)
T ss_pred HHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeCh
Confidence 9999999999999877666543 4678888766533 3444 49999999999998876522 2 8999999999
Q ss_pred CccCc-----------CCCHHH-HHHHHHHcC-------------------CCCCCCce--EEEEecc-CChHHHHHHHH
Q 013189 307 DRMLD-----------MGFEPQ-IRKIVQQMD-------------------MPPPGMRQ--TMLFSAT-FPKEIQRLASD 352 (448)
Q Consensus 307 h~ll~-----------~gf~~~-i~~i~~~l~-------------------~~~~~~~q--~i~~SAT-~~~~v~~l~~~ 352 (448)
|+|++ +||.++ +..|++.++ .. +..+| +++|||| +|..+.. .
T Consensus 209 D~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q~~li~~SAT~~p~~~~~---~ 284 (1171)
T TIGR01054 209 DALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAI-PGKKRGCLIVSSATGRPRGKRA---K 284 (1171)
T ss_pred HhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhh-hhccCcEEEEEeCCCCccccHH---H
Confidence 99998 788874 666544321 11 33444 6779999 5766543 3
Q ss_pred hhcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCch---HHHHHHHHHHHHCCC
Q 013189 353 FLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETK---KGADALEHWLYMNGF 429 (448)
Q Consensus 353 ~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~---~~a~~l~~~L~~~g~ 429 (448)
++.+...+.++.......++.+.+..+.. +...|.+++... +..+||||+|+ +.|+.|++.|...|+
T Consensus 285 l~r~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--------~~~~IVFv~t~~~~~~a~~l~~~L~~~g~ 354 (1171)
T TIGR01054 285 LFRELLGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL--------GTGGIVYVSIDYGKEKAEEIAEFLENHGV 354 (1171)
T ss_pred HcccccceEecCccccccceEEEEEeccc--HHHHHHHHHHHc--------CCCEEEEEeccccHHHHHHHHHHHHhCCc
Confidence 44566667777776777888888765543 345677777653 34689999999 999999999999999
Q ss_pred CeEEecCCCCH
Q 013189 430 PATTIHGDRTQ 440 (448)
Q Consensus 430 ~~~~iHg~~~q 440 (448)
+|..+||++++
T Consensus 355 ~a~~lhg~~~~ 365 (1171)
T TIGR01054 355 KAVAYHATKPK 365 (1171)
T ss_pred eEEEEeCCCCH
Confidence 99999999975
No 50
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=4.8e-32 Score=307.96 Aligned_cols=254 Identities=20% Similarity=0.240 Sum_probs=195.3
Q ss_pred HHHHHHHH-CCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcH
Q 013189 155 ALNLNIRR-CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR 233 (448)
Q Consensus 155 ~l~~~l~~-~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 233 (448)
++.+.+++ +|| +|+++|+.+||.++.|+|++++||||+|||++++++++.... .++++|||+||+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~-------------~g~~aLVl~PTr 132 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL-------------KGKKCYIILPTT 132 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh-------------cCCeEEEEECHH
Confidence 44555665 799 699999999999999999999999999999976666554321 235799999999
Q ss_pred HHHHHHHHHHHHhcccC--CcEEEEEECCCCHHHHHH---HHhcC-CcEEEeChhHHHHHHhcccccCCCeeEEEEecCC
Q 013189 234 ELSSQIHVEAKKFSYQT--GVKVVVAYGGAPINQQLR---ELERG-VDILVATPGRLVDLLERARVSLQMIRYLALDEAD 307 (448)
Q Consensus 234 eLa~qi~~~~~~~~~~~--~~~~~~~~gg~~~~~~~~---~l~~~-~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah 307 (448)
+|+.|+++.++.++... ++++..++|+.+..++.. .+..+ ++|||+||++|.+.+... ...++++|||||||
T Consensus 133 eLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD 210 (1638)
T PRK14701 133 LLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVD 210 (1638)
T ss_pred HHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECce
Confidence 99999999999998654 467788889998776643 34444 899999999999877642 12779999999999
Q ss_pred ccCc-----------CCCHHHHHH----HHHH---------------cC---CCCCCCce-EEEEeccCChH--HHHHHH
Q 013189 308 RMLD-----------MGFEPQIRK----IVQQ---------------MD---MPPPGMRQ-TMLFSATFPKE--IQRLAS 351 (448)
Q Consensus 308 ~ll~-----------~gf~~~i~~----i~~~---------------l~---~~~~~~~q-~i~~SAT~~~~--v~~l~~ 351 (448)
+|++ +||.+++.. |+.. +. ...+..+| ++++|||+++. +.
T Consensus 211 ~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~---- 286 (1638)
T PRK14701 211 AFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRV---- 286 (1638)
T ss_pred eccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHH----
Confidence 9987 589988875 4321 00 01133444 67899999863 33
Q ss_pred HhhcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHH---HHHHHHHHHHCC
Q 013189 352 DFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKG---ADALEHWLYMNG 428 (448)
Q Consensus 352 ~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~---a~~l~~~L~~~g 428 (448)
.++.++..+.++.......++.|.|..++...| ..|.+++... +..+||||+|++. |+.|+++|...|
T Consensus 287 ~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--------g~~gIVF~~t~~~~e~ae~la~~L~~~G 357 (1638)
T PRK14701 287 KLYRELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL--------GKGGLIFVPIDEGAEKAEEIEKYLLEDG 357 (1638)
T ss_pred HHhhcCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--------CCCeEEEEeccccchHHHHHHHHHHHCC
Confidence 344667777777777777888888877765544 5677777653 3468999999875 589999999999
Q ss_pred CCeEEecCC
Q 013189 429 FPATTIHGD 437 (448)
Q Consensus 429 ~~~~~iHg~ 437 (448)
++|..+||+
T Consensus 358 i~a~~~h~~ 366 (1638)
T PRK14701 358 FKIELVSAK 366 (1638)
T ss_pred CeEEEecch
Confidence 999999997
No 51
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=4.5e-32 Score=292.83 Aligned_cols=272 Identities=15% Similarity=0.176 Sum_probs=201.8
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCce
Q 013189 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPL 225 (448)
Q Consensus 146 ~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~ 225 (448)
.|.+++|++.+.+.+...+|. ++++|.++++.+.+++|++++||||||||+++.++++..+... .+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~-------------~k 67 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG-------------LK 67 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC-------------Cc
Confidence 477899999999999998886 9999999999999999999999999999999999999876432 35
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEec
Q 013189 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDE 305 (448)
Q Consensus 226 ~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDE 305 (448)
+||++|+++||.|+++.++++. ..++++...+|+...... ..+.++|+|+||+++..++.+....+.++++||+||
T Consensus 68 ~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDE 143 (674)
T PRK01172 68 SIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADE 143 (674)
T ss_pred EEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEec
Confidence 9999999999999999999864 357888888887664322 224589999999999999987776789999999999
Q ss_pred CCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEE-----EEec
Q 013189 306 ADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRV-----EFVH 380 (448)
Q Consensus 306 ah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~-----~~~~ 380 (448)
||++.+.++...++.++..+... +...|+|++|||++. ..+++.. +.-..+.... .+ ..+...+ .+.+
T Consensus 144 aH~l~d~~rg~~le~ll~~~~~~-~~~~riI~lSATl~n-~~~la~w-l~~~~~~~~~---r~-vpl~~~i~~~~~~~~~ 216 (674)
T PRK01172 144 IHIIGDEDRGPTLETVLSSARYV-NPDARILALSATVSN-ANELAQW-LNASLIKSNF---RP-VPLKLGILYRKRLILD 216 (674)
T ss_pred chhccCCCccHHHHHHHHHHHhc-CcCCcEEEEeCccCC-HHHHHHH-hCCCccCCCC---CC-CCeEEEEEecCeeeec
Confidence 99999888888888887766433 346889999999975 3455543 3211111000 00 0111111 0111
Q ss_pred ccc-hHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCC-------------------------CCeEEe
Q 013189 381 ESD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG-------------------------FPATTI 434 (448)
Q Consensus 381 ~~~-k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g-------------------------~~~~~i 434 (448)
... ....+..++..... .++++||||+|++.|+.++..|.... ..+..+
T Consensus 217 ~~~~~~~~~~~~i~~~~~-----~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~ 291 (674)
T PRK01172 217 GYERSQVDINSLIKETVN-----DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFH 291 (674)
T ss_pred ccccccccHHHHHHHHHh-----CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEe
Confidence 111 11123344443221 26789999999999999999986531 237789
Q ss_pred cCCCCHHHHHHHh
Q 013189 435 HGDRTQQRTSIEI 447 (448)
Q Consensus 435 Hg~~~q~eR~~~l 447 (448)
||+|++++|+.+.
T Consensus 292 hagl~~~eR~~ve 304 (674)
T PRK01172 292 HAGLSNEQRRFIE 304 (674)
T ss_pred cCCCCHHHHHHHH
Confidence 9999999998764
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.98 E-value=1.7e-30 Score=289.17 Aligned_cols=255 Identities=16% Similarity=0.137 Sum_probs=194.7
Q ss_pred HHHHHHHHHCCCCCCCHHHHhHhhhHhcC------CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEE
Q 013189 154 EALNLNIRRCKYVKPTPVQRHAIPISIGG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLAL 227 (448)
Q Consensus 154 ~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~l 227 (448)
+...+....+.| .||++|..+|+.++.+ +|+++|++||+|||.+|+.+++..+. .+++++
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-------------~g~qvl 653 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-------------NHKQVA 653 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-------------cCCeEE
Confidence 334455567777 7999999999999886 89999999999999999988876542 235799
Q ss_pred EEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeChhHHHHHHhcccccCCCeeEEEE
Q 013189 228 ILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 228 il~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVl 303 (448)
||+||++||.|+++.++++....++++.+++++.+..++...+. ..++|||+||+.| . ..+.++++.+|||
T Consensus 654 vLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~~~L~lLVI 728 (1147)
T PRK10689 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKWKDLGLLIV 728 (1147)
T ss_pred EEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCHhhCCEEEE
Confidence 99999999999999999877667889989999988877765543 3589999999643 2 3456789999999
Q ss_pred ecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccc
Q 013189 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~ 383 (448)
||+|++ |+. ....+..+ +.++|+++||||+.+.+..++...+.++..+...... ...+.+.+......
T Consensus 729 DEahrf---G~~--~~e~lk~l----~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~- 796 (1147)
T PRK10689 729 DEEHRF---GVR--HKERIKAM----RADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSL- 796 (1147)
T ss_pred echhhc---chh--HHHHHHhc----CCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcH-
Confidence 999997 433 23445555 5678999999999888888888888888877654332 12233333322221
Q ss_pred hHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC--CCCeEEecCCCCHHHHHHHh
Q 013189 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 384 k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~--g~~~~~iHg~~~q~eR~~~l 447 (448)
.....++.... .+++++||||+++.++.+++.|... ++.+.++||+|++.+|++++
T Consensus 797 --~~k~~il~el~------r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im 854 (1147)
T PRK10689 797 --VVREAILREIL------RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVM 854 (1147)
T ss_pred --HHHHHHHHHHh------cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHH
Confidence 11122232222 1567999999999999999999887 78999999999999999886
No 53
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=3.2e-30 Score=281.34 Aligned_cols=257 Identities=16% Similarity=0.138 Sum_probs=191.4
Q ss_pred CCHHHHHHHH-HCCCCCCCHHHHhHhhhHhcC------CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013189 152 LGEALNLNIR-RCKYVKPTPVQRHAIPISIGG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 152 l~~~l~~~l~-~~~~~~pt~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
.+..+.+.+. .++| +|||+|..||+.++.+ +|+++|++||||||.+|++|++..+.. ++
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-------------g~ 501 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-------------GK 501 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-------------CC
Confidence 4455555555 4678 5999999999999875 799999999999999999999987643 25
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHH---HHhc-CCcEEEeChhHHHHHHhcccccCCCeeE
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLR---ELER-GVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~~ 300 (448)
+++||+||++||.|+++.++++....++++..++++....++.+ .+.. .++|||+||.. + ...+.++++++
T Consensus 502 qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~l 576 (926)
T TIGR00580 502 QVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGL 576 (926)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCE
Confidence 69999999999999999999988778899999998877554433 3444 48999999942 2 24567899999
Q ss_pred EEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEec
Q 013189 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH 380 (448)
Q Consensus 301 lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~ 380 (448)
|||||+|++ ....+..+..+ +...|+++||||+.+....++...+.++..+.....+ ...+.+++....
T Consensus 577 lVIDEahrf-----gv~~~~~L~~~----~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~ 645 (926)
T TIGR00580 577 LIIDEEQRF-----GVKQKEKLKEL----RTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYD 645 (926)
T ss_pred EEeeccccc-----chhHHHHHHhc----CCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecC
Confidence 999999985 23344555555 5568999999998777766666666676666543322 122333333222
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC--CCCeEEecCCCCHHHHHHHh
Q 013189 381 ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 381 ~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~--g~~~~~iHg~~~q~eR~~~l 447 (448)
. ..+.+.+..... ++++++|||++++.++.+++.|... ++++..+||+|++.+|++++
T Consensus 646 ~----~~i~~~i~~el~-----~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im 705 (926)
T TIGR00580 646 P----ELVREAIRRELL-----RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVM 705 (926)
T ss_pred H----HHHHHHHHHHHH-----cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHH
Confidence 1 122222222111 1678999999999999999999884 78999999999999999886
No 54
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.97 E-value=5.3e-31 Score=253.02 Aligned_cols=225 Identities=25% Similarity=0.414 Sum_probs=172.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcc---cCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCee
Q 013189 223 YPLALILAPTRELSSQIHVEAKKFSY---QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 223 ~~~~lil~PtreLa~qi~~~~~~~~~---~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.|.+||+-|.|||+.|.++.+++|-. .+.++..+++||.....|...+.++.+|+|+||+||++.+..+.+.+..++
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 48999999999999999998887754 345677788999999999999999999999999999999999999999999
Q ss_pred EEEEecCCccCcCCCHHHHHHHHHHcCCCCC--CCceEEEEeccCC-hHHHHHHHHhhcCcEEEEeccccCcccceeEEE
Q 013189 300 YLALDEADRMLDMGFEPQIRKIVQQMDMPPP--GMRQTMLFSATFP-KEIQRLASDFLANYIFLAVGRVGSSTDLIVQRV 376 (448)
Q Consensus 300 ~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~--~~~q~i~~SAT~~-~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~ 376 (448)
+||+||||.+|.+++.+.|.++..++..... ...|.+++|||+. -+|..+....|+-|..+.....++..+.+.+.+
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv 445 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVV 445 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccce
Confidence 9999999999999999999999888843322 2469999999984 567777777888777777766555555444443
Q ss_pred EEecccc------------------------------hHHHHHHHHHHHHhcCC--CCCCccEEEEeCchHHHHHHHHHH
Q 013189 377 EFVHESD------------------------------KRSHLMDLLHAQVANGV--HGKQALTLVFVETKKGADALEHWL 424 (448)
Q Consensus 377 ~~~~~~~------------------------------k~~~L~~ll~~~~~~~~--~~~~~~~IIF~~t~~~a~~l~~~L 424 (448)
..+.... -.+....+|+....-.. .-+-.++||||.|+..|+.|.++|
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~ 525 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMM 525 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHH
Confidence 3332210 01112222222110000 011346999999999999999999
Q ss_pred HHCC---CCeEEecCCCCHHHHHHHh
Q 013189 425 YMNG---FPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 425 ~~~g---~~~~~iHg~~~q~eR~~~l 447 (448)
.+.| +.|+++|||+.+.||++.|
T Consensus 526 ~qkgg~~~scvclhgDrkP~Erk~nl 551 (725)
T KOG0349|consen 526 NQKGGKHYSCVCLHGDRKPDERKANL 551 (725)
T ss_pred HHcCCccceeEEEecCCChhHHHHHH
Confidence 8874 7899999999999998876
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.97 E-value=8.2e-30 Score=285.40 Aligned_cols=251 Identities=20% Similarity=0.241 Sum_probs=174.5
Q ss_pred EeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc------------ccCCcEE
Q 013189 187 ACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS------------YQTGVKV 254 (448)
Q Consensus 187 i~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~------------~~~~~~~ 254 (448)
|+||||||||++|.||+|+.++..............++++|||+|+++|+.|+++.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999999998653111000011235789999999999999999987521 1347899
Q ss_pred EEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcc-cccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCc
Q 013189 255 VVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMR 333 (448)
Q Consensus 255 ~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~-~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~ 333 (448)
.+.+|+++..++.+.+.+.+||||+||++|..++.+. ...+++|++|||||+|.|++..+..++..+++.|....+.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999998888888888999999999999988653 346899999999999999986555565555555543335678
Q ss_pred eEEEEeccCChHHHHHHHHhhc--CcEEEEeccccCcccceeEEEEEecccch----------------H----HHH-HH
Q 013189 334 QTMLFSATFPKEIQRLASDFLA--NYIFLAVGRVGSSTDLIVQRVEFVHESDK----------------R----SHL-MD 390 (448)
Q Consensus 334 q~i~~SAT~~~~v~~l~~~~l~--~~~~i~v~~~~~~~~~i~q~~~~~~~~~k----------------~----~~L-~~ 390 (448)
|+|+||||+++ ..++++ |+. +++.+.. ........+. .+..+.+..+ . ..+ ..
T Consensus 161 QrIgLSATI~n-~eevA~-~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAA-FLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred eEEEEEeeCCC-HHHHHH-HhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 99999999986 455554 543 3444432 1111111222 2222221110 0 011 12
Q ss_pred HHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCC---------------------------------CCeEEecCC
Q 013189 391 LLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG---------------------------------FPATTIHGD 437 (448)
Q Consensus 391 ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g---------------------------------~~~~~iHg~ 437 (448)
++.... ...++||||||++.|+.++..|+... +.+.++||+
T Consensus 237 il~~i~------~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGs 310 (1490)
T PRK09751 237 ILDEVL------RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGS 310 (1490)
T ss_pred HHHHHh------cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeecccc
Confidence 222221 15679999999999999999997531 226789999
Q ss_pred CCHHHHHHHh
Q 013189 438 RTQQRTSIEI 447 (448)
Q Consensus 438 ~~q~eR~~~l 447 (448)
|++++|..+.
T Consensus 311 LSkeeR~~IE 320 (1490)
T PRK09751 311 VSKEQRAITE 320 (1490)
T ss_pred CCHHHHHHHH
Confidence 9999999874
No 56
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.97 E-value=3.2e-28 Score=261.66 Aligned_cols=251 Identities=16% Similarity=0.189 Sum_probs=180.2
Q ss_pred HHHHCCCCCCCHHHHhHhhhHhcC------CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCc
Q 013189 159 NIRRCKYVKPTPVQRHAIPISIGG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPT 232 (448)
Q Consensus 159 ~l~~~~~~~pt~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt 232 (448)
.+..++| +||++|+.+|+.+..+ .|++++++||||||++|++|++..+.. +++++||+||
T Consensus 254 ~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-------------g~q~lilaPT 319 (681)
T PRK10917 254 FLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-------------GYQAALMAPT 319 (681)
T ss_pred HHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-------------CCeEEEEecc
Confidence 3445566 6999999999999876 489999999999999999999987632 4579999999
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHH---HHHhcC-CcEEEeChhHHHHHHhcccccCCCeeEEEEecCCc
Q 013189 233 RELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL---RELERG-VDILVATPGRLVDLLERARVSLQMIRYLALDEADR 308 (448)
Q Consensus 233 reLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~~-~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ 308 (448)
++||.|+++.++++....++++.+++|+.+..+.. ..+..+ ++|+|+||+.+.+ .+.++++.+|||||+|+
T Consensus 320 ~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 320 EILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhh
Confidence 99999999999999988899999999999865443 344444 9999999988743 34588999999999998
Q ss_pred cCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHHHH
Q 013189 309 MLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHL 388 (448)
Q Consensus 309 ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L 388 (448)
+.. ..+..+... ....++++||||..+....+......+...+. ........+.+.+.. ..+...+
T Consensus 395 fg~-----~qr~~l~~~----~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~--~~p~~r~~i~~~~~~---~~~~~~~ 460 (681)
T PRK10917 395 FGV-----EQRLALREK----GENPHVLVMTATPIPRTLAMTAYGDLDVSVID--ELPPGRKPITTVVIP---DSRRDEV 460 (681)
T ss_pred hhH-----HHHHHHHhc----CCCCCEEEEeCCCCHHHHHHHHcCCCceEEEe--cCCCCCCCcEEEEeC---cccHHHH
Confidence 632 223333333 23467999999987665444332112222222 111112234333322 2334445
Q ss_pred HHHHHHHHhcCCCCCCccEEEEeCch--------HHHHHHHHHHHHC--CCCeEEecCCCCHHHHHHHh
Q 013189 389 MDLLHAQVANGVHGKQALTLVFVETK--------KGADALEHWLYMN--GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 389 ~~ll~~~~~~~~~~~~~~~IIF~~t~--------~~a~~l~~~L~~~--g~~~~~iHg~~~q~eR~~~l 447 (448)
++.+..... ++.+++|||+++ ..++.+++.|... +++|..+||+|++++|++++
T Consensus 461 ~~~i~~~~~-----~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~ 524 (681)
T PRK10917 461 YERIREEIA-----KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVM 524 (681)
T ss_pred HHHHHHHHH-----cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHH
Confidence 555554432 267899999954 4567788888765 57899999999999999886
No 57
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.96 E-value=1.8e-28 Score=259.36 Aligned_cols=246 Identities=17% Similarity=0.216 Sum_probs=176.8
Q ss_pred HHHHhHhhhHhcCCCeeEeccCCCCcchh---------hhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013189 170 PVQRHAIPISIGGRDLMACAQTGSGKTAA---------FCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 170 ~~Q~~~i~~i~~g~d~li~a~TGsGKT~~---------~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~ 240 (448)
.+|+++++.+++++|++++|+||||||++ |++|.+..+..-. .....++++|++||||||.|+.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-------~~~~~~~ilvt~PrreLa~qi~ 239 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-------PNFIERPIVLSLPRVALVRLHS 239 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-------cccCCcEEEEECcHHHHHHHHH
Confidence 47999999999999999999999999997 5556655442211 0123457999999999999999
Q ss_pred HHHHHhccc---CCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHH
Q 013189 241 VEAKKFSYQ---TGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQ 317 (448)
Q Consensus 241 ~~~~~~~~~---~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~ 317 (448)
..+.+.... .+..+.+.+||... .+.....++.+|||+|++.. ...++.+++|||||||++..++ +.
T Consensus 240 ~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--Dl 309 (675)
T PHA02653 240 ITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DI 309 (675)
T ss_pred HHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hH
Confidence 999775433 46778889999873 22233334689999997631 1258899999999999998875 44
Q ss_pred HHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEec----------ccchHHH
Q 013189 318 IRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH----------ESDKRSH 387 (448)
Q Consensus 318 i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~----------~~~k~~~ 387 (448)
+..++..+ .+..+|+++||||++.+++.+ ..++.++..+.+. +.+...+.+.+.... +..+ ..
T Consensus 310 lL~llk~~---~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~--grt~~pV~~~yi~~~~~~~~~~~y~~~~k-~~ 382 (675)
T PHA02653 310 IIAVARKH---IDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIP--GGTLFPISEVYVKNKYNPKNKRAYIEEEK-KN 382 (675)
T ss_pred HHHHHHHh---hhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeC--CCcCCCeEEEEeecCcccccchhhhHHHH-HH
Confidence 55555443 133469999999999998887 5788888877764 333455666554322 1112 22
Q ss_pred HHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC--CCCeEEecCCCCHHHH
Q 013189 388 LMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQRT 443 (448)
Q Consensus 388 L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~--g~~~~~iHg~~~q~eR 443 (448)
+...+..... ..++.+||||+++++|+.+++.|... ++.+..+||+|++.++
T Consensus 383 ~l~~L~~~~~----~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq 436 (675)
T PHA02653 383 IVTALKKYTP----PKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDE 436 (675)
T ss_pred HHHHHHHhhc----ccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHH
Confidence 3333332211 11467999999999999999999887 7999999999999643
No 58
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.96 E-value=7.6e-28 Score=257.10 Aligned_cols=259 Identities=16% Similarity=0.204 Sum_probs=180.9
Q ss_pred HHHHHHHHHCCCCCCCHHHHhHhhhHhcC------CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEE
Q 013189 154 EALNLNIRRCKYVKPTPVQRHAIPISIGG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLAL 227 (448)
Q Consensus 154 ~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~l 227 (448)
..+.+.+..++| +||++|+++|+.++.+ .+.+++++||||||++|++|++..+.. +++++
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-------------g~qvl 288 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-------------GYQVA 288 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-------------CCcEE
Confidence 345566778888 7999999999999865 358999999999999999999987632 35699
Q ss_pred EEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHH---HHHhc-CCcEEEeChhHHHHHHhcccccCCCeeEEEE
Q 013189 228 ILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL---RELER-GVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 228 il~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVl 303 (448)
|++||++||.|+++.++++....++++.+++|+....... ..+.. .++|+|+||+.|.+ .+.+.++.+|||
T Consensus 289 ilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVI 363 (630)
T TIGR00643 289 LMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVII 363 (630)
T ss_pred EECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEE
Confidence 9999999999999999999888899999999998876533 33333 47999999998753 346789999999
Q ss_pred ecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccc
Q 013189 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~ 383 (448)
||+|++.. .+...+...... ....++++||||..+....+.. ..+.....+.........+...+ +...
T Consensus 364 DEaH~fg~----~qr~~l~~~~~~--~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p~~r~~i~~~~--~~~~- 432 (630)
T TIGR00643 364 DEQHRFGV----EQRKKLREKGQG--GFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDELPPGRKPITTVL--IKHD- 432 (630)
T ss_pred echhhccH----HHHHHHHHhccc--CCCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCCCCCCceEEEE--eCcc-
Confidence 99998632 222233333210 0246899999997655433322 11111111111111112233322 2222
Q ss_pred hHHHHHHHHHHHHhcCCCCCCccEEEEeCch--------HHHHHHHHHHHH--CCCCeEEecCCCCHHHHHHHh
Q 013189 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETK--------KGADALEHWLYM--NGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 384 k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~--------~~a~~l~~~L~~--~g~~~~~iHg~~~q~eR~~~l 447 (448)
+...+++.+..... ++.+++|||+++ ..|+.+++.|.. .+++|..+||+|++++|++++
T Consensus 433 ~~~~~~~~i~~~l~-----~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~ 501 (630)
T TIGR00643 433 EKDIVYEFIEEEIA-----KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVM 501 (630)
T ss_pred hHHHHHHHHHHHHH-----hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHH
Confidence 23455555554432 266799999976 456778888875 378899999999999999876
No 59
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.1e-28 Score=253.00 Aligned_cols=252 Identities=19% Similarity=0.271 Sum_probs=192.0
Q ss_pred HCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013189 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~ 241 (448)
-+||..+++-|.++|..+++++|+++..|||.||++||++|++-. ...+|||+|..+|...+.+
T Consensus 12 ~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~----------------~G~TLVVSPLiSLM~DQV~ 75 (590)
T COG0514 12 VFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL----------------EGLTLVVSPLISLMKDQVD 75 (590)
T ss_pred HhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc----------------CCCEEEECchHHHHHHHHH
Confidence 458999999999999999999999999999999999999998842 1249999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCCHHHHHHH---HhcC-CcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCC--CH
Q 013189 242 EAKKFSYQTGVKVVVAYGGAPINQQLRE---LERG-VDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG--FE 315 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~~-~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~g--f~ 315 (448)
.++.. |+++..+.+..+..+.... +..+ .+||+-+|++|..---...+.-..+.++|||||||+++|| |+
T Consensus 76 ~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFR 151 (590)
T COG0514 76 QLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFR 151 (590)
T ss_pred HHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccC
Confidence 99984 6888888877666554433 3333 7999999999965432223335678899999999999998 99
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhc--CcEEEEeccccCcccceeEEEEEec-ccchHHHHHHHH
Q 013189 316 PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLA--NYIFLAVGRVGSSTDLIVQRVEFVH-ESDKRSHLMDLL 392 (448)
Q Consensus 316 ~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~--~~~~i~v~~~~~~~~~i~q~~~~~~-~~~k~~~L~~ll 392 (448)
+.+.++.......+ +..++++|||.++.++.-+...|. ++. +... ....+||...+.... ..++.. ++
T Consensus 152 P~Y~~lg~l~~~~~--~~p~~AlTATA~~~v~~DI~~~L~l~~~~-~~~~--sfdRpNi~~~v~~~~~~~~q~~----fi 222 (590)
T COG0514 152 PDYRRLGRLRAGLP--NPPVLALTATATPRVRDDIREQLGLQDAN-IFRG--SFDRPNLALKVVEKGEPSDQLA----FL 222 (590)
T ss_pred HhHHHHHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHhcCCCcc-eEEe--cCCCchhhhhhhhcccHHHHHH----HH
Confidence 99999988776554 567999999999999988777664 332 2221 223344433222221 122222 33
Q ss_pred HHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHH
Q 013189 393 HAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 393 ~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~ 446 (448)
.... ....+..||||.|++.|+.++++|...|+++..||++|+.++|+.+
T Consensus 223 ~~~~----~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~ 272 (590)
T COG0514 223 ATVL----PQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERV 272 (590)
T ss_pred Hhhc----cccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHH
Confidence 2210 0125668999999999999999999999999999999999999864
No 60
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.96 E-value=2e-28 Score=242.76 Aligned_cols=281 Identities=21% Similarity=0.250 Sum_probs=224.2
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhh-HhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013189 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPI-SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 146 ~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
..+++++++.+.+.++..|++.+.|+|.-++.. ++.|.|++|+++|+||||++.-+.-+..++..+ .
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g------------~ 262 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGG------------K 262 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCC------------C
Confidence 467899999999999999999999999999986 569999999999999999999999888887643 4
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHH----HhcCCcEEEeChhHHHHHHhcccccCCCeeE
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE----LERGVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~----l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~ 300 (448)
+.|+|+|..+||+|-++.++.-....++++.+-.|-..+.....- -....||+|+|.+.+..+|..+ .++.+|..
T Consensus 263 KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGt 341 (830)
T COG1202 263 KMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGT 341 (830)
T ss_pred eEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Ccccccce
Confidence 599999999999999999987667778888887776554433211 1124699999999998888877 57999999
Q ss_pred EEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEec
Q 013189 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH 380 (448)
Q Consensus 301 lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~ 380 (448)
||+||+|.+-+....+.+.-++..++... +..|+|.+|||.... +.+++.+-.+.+...- .+..+..++.++.
T Consensus 342 VVIDEiHtL~deERG~RLdGLI~RLr~l~-~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~-----RPVplErHlvf~~ 414 (830)
T COG1202 342 VVIDEIHTLEDEERGPRLDGLIGRLRYLF-PGAQFIYLSATVGNP-EELAKKLGAKLVLYDE-----RPVPLERHLVFAR 414 (830)
T ss_pred EEeeeeeeccchhcccchhhHHHHHHHhC-CCCeEEEEEeecCCh-HHHHHHhCCeeEeecC-----CCCChhHeeeeec
Confidence 99999998877666666777776665443 368999999998443 4566666555544422 2233444666776
Q ss_pred -ccchHHHHHHHHHHH-HhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHH
Q 013189 381 -ESDKRSHLMDLLHAQ-VANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 381 -~~~k~~~L~~ll~~~-~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~ 446 (448)
+.+|...+..+.+.. ...+..|..++||||++|++.|..|+++|...|+++..||++|++.+|+.+
T Consensus 415 ~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~v 482 (830)
T COG1202 415 NESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSV 482 (830)
T ss_pred CchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHH
Confidence 677877777777654 334556667899999999999999999999999999999999999999864
No 61
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.96 E-value=3.1e-28 Score=217.65 Aligned_cols=168 Identities=33% Similarity=0.564 Sum_probs=145.6
Q ss_pred CHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc
Q 013189 169 TPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY 248 (448)
Q Consensus 169 t~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~ 248 (448)
||+|.++++.+.+++|+++++|||+|||++|++|+++.+.+.. ..++||++|+++|+.|+++.+.++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~-----------~~~~lii~P~~~l~~q~~~~~~~~~~ 69 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK-----------DARVLIIVPTRALAEQQFERLRKFFS 69 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS-----------SSEEEEEESSHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC-----------CceEEEEeeccccccccccccccccc
Confidence 7999999999999999999999999999999999998886541 13699999999999999999999988
Q ss_pred cCCcEEEEEECCCCHH-HHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCC
Q 013189 249 QTGVKVVVAYGGAPIN-QQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDM 327 (448)
Q Consensus 249 ~~~~~~~~~~gg~~~~-~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~ 327 (448)
..++++..++++.... .+...+..+++|+|+||++|.+++.....++.++++|||||+|.+..+.+...+..|+..+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~ 149 (169)
T PF00270_consen 70 NTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR 149 (169)
T ss_dssp TTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT
T ss_pred ccccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcC
Confidence 8888999999999866 444555567999999999999999886667778999999999999998888899999988743
Q ss_pred CCCCCceEEEEeccCChHHHHH
Q 013189 328 PPPGMRQTMLFSATFPKEIQRL 349 (448)
Q Consensus 328 ~~~~~~q~i~~SAT~~~~v~~l 349 (448)
.. ..|++++|||+++.++.+
T Consensus 150 ~~--~~~~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 150 FK--NIQIILLSATLPSNVEKL 169 (169)
T ss_dssp TT--TSEEEEEESSSTHHHHHH
T ss_pred CC--CCcEEEEeeCCChhHhhC
Confidence 32 478999999999877754
No 62
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=4.7e-27 Score=254.12 Aligned_cols=240 Identities=15% Similarity=0.152 Sum_probs=172.8
Q ss_pred hHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH-HhcccCCc
Q 013189 174 HAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK-KFSYQTGV 252 (448)
Q Consensus 174 ~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~-~~~~~~~~ 252 (448)
+.+..+.++++++++|+||||||++|.+++++... ..+++||++|||++|.|+++.+. .+....+.
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-------------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~ 75 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-------------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ 75 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-------------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc
Confidence 44556667899999999999999999999997541 13479999999999999999885 44445556
Q ss_pred EEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCC-ccCcCCCHHH-HHHHHHHcCCCCC
Q 013189 253 KVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEAD-RMLDMGFEPQ-IRKIVQQMDMPPP 330 (448)
Q Consensus 253 ~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah-~ll~~gf~~~-i~~i~~~l~~~~~ 330 (448)
.+...+.+.. ......+|+|+|||+|++++.+. ..++++++|||||+| ++++.+|.-. +..+...+ +
T Consensus 76 ~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~l----r 144 (819)
T TIGR01970 76 TVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSL----R 144 (819)
T ss_pred EEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhc----C
Confidence 6665555432 22345799999999999999864 479999999999999 5777666443 34455555 5
Q ss_pred CCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHH-HHHHHHHHHHhcCCCCCCccEEE
Q 013189 331 GMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRS-HLMDLLHAQVANGVHGKQALTLV 409 (448)
Q Consensus 331 ~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~-~L~~ll~~~~~~~~~~~~~~~II 409 (448)
.+.|+|+||||++.+. +..|+.+...+.+... ...+.++|..+...++.. .+...+...... ..+.+||
T Consensus 145 ~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~----~~g~iLV 214 (819)
T TIGR01970 145 EDLKILAMSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS----ETGSILV 214 (819)
T ss_pred CCceEEEEeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecchhhhHHHHHHHHHHHHHHh----cCCcEEE
Confidence 6789999999999764 3467765444433211 223555555554433322 122222222111 1467999
Q ss_pred EeCchHHHHHHHHHHHH---CCCCeEEecCCCCHHHHHHHh
Q 013189 410 FVETKKGADALEHWLYM---NGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 410 F~~t~~~a~~l~~~L~~---~g~~~~~iHg~~~q~eR~~~l 447 (448)
||+++++++.+++.|.. .++.+..+||+|++++|.+++
T Consensus 215 Flpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~ 255 (819)
T TIGR01970 215 FLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAI 255 (819)
T ss_pred EECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHH
Confidence 99999999999999987 479999999999999999886
No 63
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.95 E-value=5.5e-27 Score=254.11 Aligned_cols=240 Identities=13% Similarity=0.146 Sum_probs=172.8
Q ss_pred hHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH-hcccCCc
Q 013189 174 HAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK-FSYQTGV 252 (448)
Q Consensus 174 ~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~-~~~~~~~ 252 (448)
+.+..+.++++++++|+||||||++|.+++|+... ..+++||++|||++|.|+++.+.+ +....+.
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-------------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~ 78 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-------------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGE 78 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-------------cCCeEEEECChHHHHHHHHHHHHHHhCcccCc
Confidence 34456667899999999999999999999886431 124699999999999999999854 4555667
Q ss_pred EEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCc-cCcCCCH-HHHHHHHHHcCCCCC
Q 013189 253 KVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR-MLDMGFE-PQIRKIVQQMDMPPP 330 (448)
Q Consensus 253 ~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~-ll~~gf~-~~i~~i~~~l~~~~~ 330 (448)
.+...+++.... ....+|+|+|||+|++++... ..++++++|||||+|. .++.++. ..+..++..+ +
T Consensus 79 ~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~l----r 147 (812)
T PRK11664 79 TVGYRMRAESKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGL----R 147 (812)
T ss_pred eEEEEecCcccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhC----C
Confidence 777777765422 234689999999999998864 4699999999999997 4554432 2334455555 5
Q ss_pred CCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHH-HHHHHHHHHHhcCCCCCCccEEE
Q 013189 331 GMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRS-HLMDLLHAQVANGVHGKQALTLV 409 (448)
Q Consensus 331 ~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~-~L~~ll~~~~~~~~~~~~~~~II 409 (448)
.+.|+|+||||++.+. ...|+.+...+.+.. . ...+.++|..+...++.. .+...+...... ..+.+||
T Consensus 148 ~~lqlilmSATl~~~~---l~~~~~~~~~I~~~g--r-~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~----~~g~iLV 217 (812)
T PRK11664 148 DDLKLLIMSATLDNDR---LQQLLPDAPVIVSEG--R-SFPVERRYQPLPAHQRFDEAVARATAELLRQ----ESGSLLL 217 (812)
T ss_pred ccceEEEEecCCCHHH---HHHhcCCCCEEEecC--c-cccceEEeccCchhhhHHHHHHHHHHHHHHh----CCCCEEE
Confidence 6789999999998752 346666554444321 1 223566665555444443 222222222211 1567999
Q ss_pred EeCchHHHHHHHHHHHH---CCCCeEEecCCCCHHHHHHHh
Q 013189 410 FVETKKGADALEHWLYM---NGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 410 F~~t~~~a~~l~~~L~~---~g~~~~~iHg~~~q~eR~~~l 447 (448)
||+++++++.+++.|.. .++.+..+||+|++++|.+++
T Consensus 218 Flpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~ 258 (812)
T PRK11664 218 FLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAI 258 (812)
T ss_pred EcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHh
Confidence 99999999999999987 578999999999999998876
No 64
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.95 E-value=2.9e-26 Score=229.10 Aligned_cols=256 Identities=15% Similarity=0.078 Sum_probs=169.8
Q ss_pred HHHhHhhhHhcCCC--eeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc
Q 013189 171 VQRHAIPISIGGRD--LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY 248 (448)
Q Consensus 171 ~Q~~~i~~i~~g~d--~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~ 248 (448)
.|.++++.+.++.+ ++++||||||||.+|++|++.. ..++||++|+++|+.|+++.++++..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~----------------~~~~~~~~P~~aL~~~~~~~~~~~~~ 64 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG----------------ENDTIALYPTNALIEDQTEAIKEFVD 64 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc----------------CCCEEEEeChHHHHHHHHHHHHHHHH
Confidence 48999999998864 7899999999999999998841 12489999999999999999998863
Q ss_pred c----CCcEEEEEECCCCHH--HHH------------------HHHhcCCcEEEeChhHHHHHHhccc--------ccCC
Q 013189 249 Q----TGVKVVVAYGGAPIN--QQL------------------RELERGVDILVATPGRLVDLLERAR--------VSLQ 296 (448)
Q Consensus 249 ~----~~~~~~~~~gg~~~~--~~~------------------~~l~~~~~Ilv~TP~~L~~~l~~~~--------~~l~ 296 (448)
. .++.+..+.|.+... ... ......++|+++||+.|..++.... ..+.
T Consensus 65 ~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~ 144 (357)
T TIGR03158 65 VFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYT 144 (357)
T ss_pred hcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhc
Confidence 2 245666655542211 000 0112358899999999987664321 1257
Q ss_pred CeeEEEEecCCccCcCCC--HH---HHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHh--hcCcEEEEeccc----
Q 013189 297 MIRYLALDEADRMLDMGF--EP---QIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF--LANYIFLAVGRV---- 365 (448)
Q Consensus 297 ~v~~lVlDEah~ll~~gf--~~---~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~--l~~~~~i~v~~~---- 365 (448)
++++|||||+|.+..+.. .. .+..++... ....+++++|||+++.+...+... +..++....+..
T Consensus 145 ~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~ 220 (357)
T TIGR03158 145 KFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFF----ECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFP 220 (357)
T ss_pred CCCEEEEecccccCcccchhhhhhhHHHHHHHhh----hcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccC
Confidence 899999999999864331 11 222333322 223589999999999988877765 444443322220
Q ss_pred -------cC-------cccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCC--C
Q 013189 366 -------GS-------STDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG--F 429 (448)
Q Consensus 366 -------~~-------~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g--~ 429 (448)
.. ....+.+.+.. ....|...+..++...........+.++||||+|++.|+.+++.|+..+ +
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~ 299 (357)
T TIGR03158 221 DNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGD 299 (357)
T ss_pred CChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCc
Confidence 00 01245554443 3334444444443332111000125689999999999999999999864 6
Q ss_pred CeEEecCCCCHHHHHHHh
Q 013189 430 PATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 430 ~~~~iHg~~~q~eR~~~l 447 (448)
.+..+||.+++.+|++++
T Consensus 300 ~~~~l~g~~~~~~R~~~~ 317 (357)
T TIGR03158 300 DIGRITGFAPKKDRERAM 317 (357)
T ss_pred eEEeeecCCCHHHHHHhc
Confidence 789999999999998753
No 65
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.95 E-value=3.4e-27 Score=236.80 Aligned_cols=237 Identities=18% Similarity=0.112 Sum_probs=161.1
Q ss_pred CeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCH
Q 013189 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPI 263 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~ 263 (448)
|++++||||||||++|++|++..+... ...++||++|+++|+.|+++.++.+... ++..++++...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-----------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~ 66 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-----------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSF 66 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-----------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHH
Confidence 689999999999999999999875432 2346999999999999999999997432 34444544331
Q ss_pred HH-----------H-HHHHh------cCCcEEEeChhHHHHHHhccc----ccCC--CeeEEEEecCCccCcCCCHHHHH
Q 013189 264 NQ-----------Q-LRELE------RGVDILVATPGRLVDLLERAR----VSLQ--MIRYLALDEADRMLDMGFEPQIR 319 (448)
Q Consensus 264 ~~-----------~-~~~l~------~~~~Ilv~TP~~L~~~l~~~~----~~l~--~v~~lVlDEah~ll~~gf~~~i~ 319 (448)
.. . ..... ...+|+|+||++++..+.... ..+. ..++|||||||.++++++.. +.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~ 145 (358)
T TIGR01587 67 KRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-IL 145 (358)
T ss_pred HHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HH
Confidence 10 0 00111 136899999999988876521 1111 23789999999999875543 66
Q ss_pred HHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCccc-ceeEEEEEec--ccchHHHHHHHHHHHH
Q 013189 320 KIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTD-LIVQRVEFVH--ESDKRSHLMDLLHAQV 396 (448)
Q Consensus 320 ~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~-~i~q~~~~~~--~~~k~~~L~~ll~~~~ 396 (448)
.++..+. ....|+++||||+|+.+.+++..+........... .... ...+.+..+. ...+...+.+++....
T Consensus 146 ~~l~~l~---~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 220 (358)
T TIGR01587 146 AVLEVLK---DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDL--KEERRFERHRFIKIESDKVGEISSLERLLEFIK 220 (358)
T ss_pred HHHHHHH---HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCC--ccccccccccceeeccccccCHHHHHHHHHHhh
Confidence 6666663 34678999999999888877766543321111110 0101 1122332222 2345666666665432
Q ss_pred hcCCCCCCccEEEEeCchHHHHHHHHHHHHCCC--CeEEecCCCCHHHHHHH
Q 013189 397 ANGVHGKQALTLVFVETKKGADALEHWLYMNGF--PATTIHGDRTQQRTSIE 446 (448)
Q Consensus 397 ~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~--~~~~iHg~~~q~eR~~~ 446 (448)
.+.++||||+|+++|+.+++.|...+. .+..+||++++.+|.++
T Consensus 221 ------~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~ 266 (358)
T TIGR01587 221 ------KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKK 266 (358)
T ss_pred ------CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHH
Confidence 267899999999999999999988776 49999999999999764
No 66
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.95 E-value=1.1e-26 Score=242.25 Aligned_cols=248 Identities=13% Similarity=0.107 Sum_probs=168.1
Q ss_pred CCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013189 165 YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 165 ~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~ 244 (448)
...|+++|.++++.++.+++.++++|||+|||+++... ...++.. ..+++|||+||++|+.|+.+.++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l-~~~~~~~-----------~~~~vLilvpt~eL~~Q~~~~l~ 179 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLL-SRYYLEN-----------YEGKVLIIVPTTSLVTQMIDDFV 179 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH-HHHHHhc-----------CCCeEEEEECcHHHHHHHHHHHH
Confidence 45799999999999999999999999999999976432 2222221 12369999999999999999999
Q ss_pred HhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHH
Q 013189 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 245 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
++.......+..+++|.... ...+|+|+||++|.+... ..++++++||+||||++.. ..+..++..
T Consensus 180 ~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~----~~~~~il~~ 245 (501)
T PHA02558 180 DYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG----KSLTSIITK 245 (501)
T ss_pred HhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc----hhHHHHHHh
Confidence 98755455566667775432 347999999999976542 2468899999999999976 456677777
Q ss_pred cCCCCCCCceEEEEeccCChHHHHHHHH-hhcCcEEEEecccc------------------Ccc---cce-----eEEEE
Q 013189 325 MDMPPPGMRQTMLFSATFPKEIQRLASD-FLANYIFLAVGRVG------------------SST---DLI-----VQRVE 377 (448)
Q Consensus 325 l~~~~~~~~q~i~~SAT~~~~v~~l~~~-~l~~~~~i~v~~~~------------------~~~---~~i-----~q~~~ 377 (448)
+ ++.+++++||||+.......... .+-.++...+.... .+. ..+ .+.+.
T Consensus 246 ~----~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 321 (501)
T PHA02558 246 L----DNCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIK 321 (501)
T ss_pred h----hccceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHH
Confidence 6 55678999999986532211110 01111111111000 000 000 00000
Q ss_pred -EecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 378 -FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 378 -~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+....+...+.+++..... .+.++||||+++++|+.|++.|...+++|..+||++++++|++++
T Consensus 322 ~l~~~~~Rn~~I~~~~~~~~~-----~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~ 387 (501)
T PHA02558 322 YITSHTKRNKWIANLALKLAK-----KGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMK 387 (501)
T ss_pred HHhccHHHHHHHHHHHHHHHh-----cCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 11122233334444433321 256799999999999999999999999999999999999999764
No 67
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.95 E-value=3.5e-26 Score=248.29 Aligned_cols=277 Identities=22% Similarity=0.242 Sum_probs=206.5
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcC
Q 013189 152 LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP 231 (448)
Q Consensus 152 l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 231 (448)
....+..++.+.++..+.+.|.+|+..+.+|+|+||+.+||||||.+|++|||+.+++.... ++|+|.|
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-----------~AL~lYP 123 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-----------RALLLYP 123 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-----------cEEEEec
Confidence 44556888888899999999999999999999999999999999999999999999876521 5999999
Q ss_pred cHHHHHHHHHHHHHhcccCC--cEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcc----cccCCCeeEEEEec
Q 013189 232 TRELSSQIHVEAKKFSYQTG--VKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA----RVSLQMIRYLALDE 305 (448)
Q Consensus 232 treLa~qi~~~~~~~~~~~~--~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~----~~~l~~v~~lVlDE 305 (448)
|++||+++.+.++++....+ +.+....|++...+....+...++||++||.+|..++... ...+++++||||||
T Consensus 124 tnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDE 203 (851)
T COG1205 124 TNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDE 203 (851)
T ss_pred hhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEec
Confidence 99999999999999987666 7888888888877666777888999999999998865432 34578899999999
Q ss_pred CCccCcCCCHHHHHHHHHH----cCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEe--
Q 013189 306 ADRMLDMGFEPQIRKIVQQ----MDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFV-- 379 (448)
Q Consensus 306 ah~ll~~gf~~~i~~i~~~----l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~-- 379 (448)
+|..-. -|..++..++.. ++.. +...|+|+.|||+... .+++.++........+.....+.......+...
T Consensus 204 lHtYrG-v~GS~vA~llRRL~~~~~~~-~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~ 280 (851)
T COG1205 204 LHTYRG-VQGSEVALLLRRLLRRLRRY-GSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPI 280 (851)
T ss_pred ceeccc-cchhHHHHHHHHHHHHHhcc-CCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcc
Confidence 997632 244554444444 4333 3568999999998654 455566655544443444444444433322222
Q ss_pred ---c---ccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHH----HHHHHCC----CCeEEecCCCCHHHHHH
Q 013189 380 ---H---ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALE----HWLYMNG----FPATTIHGDRTQQRTSI 445 (448)
Q Consensus 380 ---~---~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~----~~L~~~g----~~~~~iHg~~~q~eR~~ 445 (448)
. ...+...+..++.....+ +-++|+||.+++.|+.+. ..+...+ ..+..+|+++..++|.+
T Consensus 281 ~~~~~~~r~s~~~~~~~~~~~~~~~-----~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ 355 (851)
T COG1205 281 RELAESIRRSALAELATLAALLVRN-----GIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRR 355 (851)
T ss_pred hhhhhhcccchHHHHHHHHHHHHHc-----CceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHH
Confidence 0 123444444444444433 678999999999999997 4444445 67899999999999986
Q ss_pred Hh
Q 013189 446 EI 447 (448)
Q Consensus 446 ~l 447 (448)
+.
T Consensus 356 ie 357 (851)
T COG1205 356 IE 357 (851)
T ss_pred HH
Confidence 63
No 68
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=2.4e-25 Score=232.53 Aligned_cols=256 Identities=18% Similarity=0.172 Sum_probs=192.9
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
..|+++|..++|.++.|+ |+.++||+|||++|.+|++...+. ++.++||+||++||.|.++.+.+
T Consensus 102 ~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~-------------G~~v~VvTptreLA~qdae~~~~ 166 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA-------------GLPVHVITVNDYLAERDAELMRP 166 (656)
T ss_pred CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc-------------CCeEEEEcCcHHHHHHHHHHHHH
Confidence 479999999999999999 999999999999999999976542 35699999999999999999999
Q ss_pred hcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHH-HHHHhccc-------------------------ccCCCee
Q 013189 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR-------------------------VSLQMIR 299 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L-~~~l~~~~-------------------------~~l~~v~ 299 (448)
+....++++.+++||.+. +.+.+..++||+|+|..-| .|+|..+. .-...+.
T Consensus 167 l~~~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~ 244 (656)
T PRK12898 167 LYEALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLH 244 (656)
T ss_pred HHhhcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccc
Confidence 999999999999999864 4556667899999999988 55654321 1135578
Q ss_pred EEEEecCCccC-cC-----------------CCHHHHHHHHHHcCCC-----------------------------C---
Q 013189 300 YLALDEADRML-DM-----------------GFEPQIRKIVQQMDMP-----------------------------P--- 329 (448)
Q Consensus 300 ~lVlDEah~ll-~~-----------------gf~~~i~~i~~~l~~~-----------------------------~--- 329 (448)
+.||||+|.+| |. .+...+..++..+... +
T Consensus 245 ~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~ 324 (656)
T PRK12898 245 FAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAW 324 (656)
T ss_pred eeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhc
Confidence 99999999764 11 0111111111111000 0
Q ss_pred -----------------------------------------------------------------CC-------------
Q 013189 330 -----------------------------------------------------------------PG------------- 331 (448)
Q Consensus 330 -----------------------------------------------------------------~~------------- 331 (448)
..
T Consensus 325 ~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~ 404 (656)
T PRK12898 325 RGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRF 404 (656)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHH
Confidence 00
Q ss_pred ---CceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEE
Q 013189 332 ---MRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTL 408 (448)
Q Consensus 332 ---~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~I 408 (448)
-..+..||||++.+..++...|..+++.+...... .....+.++++...+|...|.+++..... .+.++|
T Consensus 405 Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~t~~~K~~aL~~~i~~~~~-----~~~pvL 477 (656)
T PRK12898 405 FRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFLTAAAKWAAVAARVRELHA-----QGRPVL 477 (656)
T ss_pred HHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEeCHHHHHHHHHHHHHHHHh-----cCCCEE
Confidence 03567899999988888888887777666554333 22234456667778899999998876432 256799
Q ss_pred EEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHH
Q 013189 409 VFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSI 445 (448)
Q Consensus 409 IF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~ 445 (448)
|||+|++.++.|++.|...|+++..|||++.+.|+..
T Consensus 478 Ift~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE~~i 514 (656)
T PRK12898 478 VGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAI 514 (656)
T ss_pred EEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHHHHH
Confidence 9999999999999999999999999999977666553
No 69
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.93 E-value=3.8e-25 Score=237.18 Aligned_cols=253 Identities=19% Similarity=0.217 Sum_probs=186.4
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHhHhh-hHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEE
Q 013189 150 IDLGEALNLNIRRCKYVKPTPVQRHAIP-ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALI 228 (448)
Q Consensus 150 ~~l~~~l~~~l~~~~~~~pt~~Q~~~i~-~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~li 228 (448)
..+.+.+.+.+...++....+-|+.++. .+..++|++||+|||||||+.+++.|++.+.+. +.++|+
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~------------~~k~vY 81 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG------------GGKVVY 81 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc------------CCcEEE
Confidence 3477888888888888777777777665 455779999999999999999999999998764 235999
Q ss_pred EcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCc
Q 013189 229 LAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR 308 (448)
Q Consensus 229 l~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ 308 (448)
|||+++||.++++++++| ...|+++...+|+...... ...+++|+|+||+++..++++....+..|++|||||+|.
T Consensus 82 ivPlkALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~ 157 (766)
T COG1204 82 IVPLKALAEEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHL 157 (766)
T ss_pred EeChHHHHHHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeee
Confidence 999999999999999954 3568999999999875542 223589999999999999988777789999999999999
Q ss_pred cCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccC-cccceeEEEEEecccc----
Q 013189 309 MLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGS-STDLIVQRVEFVHESD---- 383 (448)
Q Consensus 309 ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~-~~~~i~q~~~~~~~~~---- 383 (448)
+.+....+.++.|+..+.... ...|++.+|||+|.- .+++...-.+++......... ......+.+.......
T Consensus 158 l~d~~RG~~lE~iv~r~~~~~-~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~ 235 (766)
T COG1204 158 LGDRTRGPVLESIVARMRRLN-ELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWP 235 (766)
T ss_pred cCCcccCceehhHHHHHHhhC-cceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCcccccc
Confidence 988767778888887774432 237999999999864 444443333443211111111 1122334444444222
Q ss_pred --hHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHH
Q 013189 384 --KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLY 425 (448)
Q Consensus 384 --k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~ 425 (448)
+...+++++..... .++++||||+|++.|...+..|.
T Consensus 236 ~~~~~~~~~~v~~~~~-----~~~qvLvFv~sR~~a~~~A~~l~ 274 (766)
T COG1204 236 LLIDNLALELVLESLA-----EGGQVLVFVHSRKEAEKTAKKLR 274 (766)
T ss_pred ccchHHHHHHHHHHHh-----cCCeEEEEEecCchHHHHHHHHH
Confidence 23444444444332 27789999999999999999987
No 70
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=1.2e-24 Score=228.42 Aligned_cols=262 Identities=19% Similarity=0.219 Sum_probs=184.7
Q ss_pred HCCCCCCCHHHHhHhhhHh-cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013189 162 RCKYVKPTPVQRHAIPISI-GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~ 240 (448)
-++|..++.+|..++|.+. ++.|++||||||+|||..|+|.||+.+.++.. .........++|+|+|+++||..++
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~---~~~i~k~~fKiVYIaPmKALa~Em~ 181 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEE---QGDIAKDDFKIVYIAPMKALAAEMV 181 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhcc---ccccccCCceEEEEechHHHHHHHH
Confidence 3578889999999999887 67899999999999999999999988765221 1123345678999999999999999
Q ss_pred HHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhccc---ccCCCeeEEEEecCCccCcCCCHHH
Q 013189 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR---VSLQMIRYLALDEADRMLDMGFEPQ 317 (448)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~---~~l~~v~~lVlDEah~ll~~gf~~~ 317 (448)
+.+.+-...++++|..++|++...... + ..++|||+||+.+.-.-++.. ..++.|++|||||+|.|-+ ...+.
T Consensus 182 ~~~~kkl~~~gi~v~ELTGD~ql~~te--i-~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpv 257 (1230)
T KOG0952|consen 182 DKFSKKLAPLGISVRELTGDTQLTKTE--I-ADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPV 257 (1230)
T ss_pred HHHhhhcccccceEEEecCcchhhHHH--H-HhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccch
Confidence 999887777899999999998866544 2 248999999999854433321 2368899999999996654 56677
Q ss_pred HHHHHHHcCC---CCCCCceEEEEeccCChHHHHHHHHhhc-C-cEEEEeccccCcccceeEEEEEeccc---chHH---
Q 013189 318 IRKIVQQMDM---PPPGMRQTMLFSATFPKEIQRLASDFLA-N-YIFLAVGRVGSSTDLIVQRVEFVHES---DKRS--- 386 (448)
Q Consensus 318 i~~i~~~l~~---~~~~~~q~i~~SAT~~~~v~~l~~~~l~-~-~~~i~v~~~~~~~~~i~q~~~~~~~~---~k~~--- 386 (448)
++.|+.+... ..-...++|++|||+|.- .+++ .||+ + +..++.......+..+.|.++-.+.. .+..
T Consensus 258 lEtiVaRtlr~vessqs~IRivgLSATlPN~-eDvA-~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d 335 (1230)
T KOG0952|consen 258 LETIVARTLRLVESSQSMIRIVGLSATLPNY-EDVA-RFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNID 335 (1230)
T ss_pred HHHHHHHHHHHHHhhhhheEEEEeeccCCCH-HHHH-HHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHH
Confidence 7777776631 113457899999999964 4444 4444 3 44454444444455566666665443 1111
Q ss_pred -HHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC----CCCeEEecCC
Q 013189 387 -HLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN----GFPATTIHGD 437 (448)
Q Consensus 387 -~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~----g~~~~~iHg~ 437 (448)
...+-+.+... .+.+++|||.++..+...|+.|.+. |....++|+.
T Consensus 336 ~~~~~kv~e~~~-----~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~ 386 (1230)
T KOG0952|consen 336 EVCYDKVVEFLQ-----EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSP 386 (1230)
T ss_pred HHHHHHHHHHHH-----cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCCh
Confidence 11111111111 2778999999999999999988653 4455555554
No 71
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.93 E-value=1e-24 Score=235.64 Aligned_cols=262 Identities=18% Similarity=0.217 Sum_probs=196.1
Q ss_pred HHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcH
Q 013189 154 EALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR 233 (448)
Q Consensus 154 ~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 233 (448)
+.+......+|+..++|-|.++|..++.|+|+++.+|||.||++||+||++- ..+.+|||+|..
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l----------------~~gitvVISPL~ 314 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL----------------LGGVTVVISPLI 314 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc----------------cCCceEEeccHH
Confidence 4445555578999999999999999999999999999999999999999872 223699999999
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHH---HHhc---CCcEEEeChhHHHHHH--hcccccCCC---eeEEE
Q 013189 234 ELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLR---ELER---GVDILVATPGRLVDLL--ERARVSLQM---IRYLA 302 (448)
Q Consensus 234 eLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~---~~~Ilv~TP~~L~~~l--~~~~~~l~~---v~~lV 302 (448)
.|+..+...+.+ .++....+.++....++.. .+.. .++|++.||+.+...- .....++.. +.++|
T Consensus 315 SLm~DQv~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~v 390 (941)
T KOG0351|consen 315 SLMQDQVTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFV 390 (941)
T ss_pred HHHHHHHHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEE
Confidence 999888777744 4788888888888764433 3333 3799999999985432 112223444 89999
Q ss_pred EecCCccCcCC--CHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhc--CcEEEEeccccCcccceeEEEEE
Q 013189 303 LDEADRMLDMG--FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLA--NYIFLAVGRVGSSTDLIVQRVEF 378 (448)
Q Consensus 303 lDEah~ll~~g--f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~--~~~~i~v~~~~~~~~~i~q~~~~ 378 (448)
+||||+..+|| |++.++++.......+. +.+|.+|||.+..|+.-+-..|. ++..+ ......+++. |.+
T Consensus 391 IDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~--vP~iALTATAT~~v~~DIi~~L~l~~~~~~---~~sfnR~NL~--yeV 463 (941)
T KOG0351|consen 391 IDEAHCVSQWGHDFRPSYKRLGLLRIRFPG--VPFIALTATATERVREDVIRSLGLRNPELF---KSSFNRPNLK--YEV 463 (941)
T ss_pred ecHHHHhhhhcccccHHHHHHHHHHhhCCC--CCeEEeehhccHHHHHHHHHHhCCCCccee---cccCCCCCce--EEE
Confidence 99999999998 99999998877655433 78999999999999887776654 44422 1222334443 333
Q ss_pred ecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHH
Q 013189 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 379 ~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~ 446 (448)
.....+ ..+..++....... ....+||||.++++|+.++..|+..|+.+..||++|+..+|+.+
T Consensus 464 ~~k~~~-~~~~~~~~~~~~~~---~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~V 527 (941)
T KOG0351|consen 464 SPKTDK-DALLDILEESKLRH---PDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETV 527 (941)
T ss_pred EeccCc-cchHHHHHHhhhcC---CCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHH
Confidence 333322 22222222222111 26779999999999999999999999999999999999999876
No 72
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.93 E-value=3.2e-25 Score=213.19 Aligned_cols=268 Identities=16% Similarity=0.183 Sum_probs=187.1
Q ss_pred HHHHHHH-HCCCCCC-CHHHHhHhhhHh-cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcC
Q 013189 155 ALNLNIR-RCKYVKP-TPVQRHAIPISI-GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP 231 (448)
Q Consensus 155 ~l~~~l~-~~~~~~p-t~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 231 (448)
.+.++|+ -+|+.++ ++.|+.|+..+. ..+||.|++|||+||++||+||.|.. +..+||++|
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~----------------~gITIV~SP 69 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH----------------GGITIVISP 69 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh----------------CCeEEEehH
Confidence 3445555 3477775 799999999876 56899999999999999999998841 236999999
Q ss_pred cHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhc------CCcEEEeChhHHHHH----HhcccccCCCeeEE
Q 013189 232 TRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER------GVDILVATPGRLVDL----LERARVSLQMIRYL 301 (448)
Q Consensus 232 treLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~------~~~Ilv~TP~~L~~~----l~~~~~~l~~v~~l 301 (448)
..+|+.++.+.+.++ .+.+..+..-.+..+..+.+.+ ...||+-||+....- +.+...+-.-+.|+
T Consensus 70 LiALIkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~ 145 (641)
T KOG0352|consen 70 LIALIKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYI 145 (641)
T ss_pred HHHHHHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeE
Confidence 999999999999996 4556666666665555444332 357899999986321 12222334568999
Q ss_pred EEecCCccCcCC--CHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHh--hcCcEEEEeccccCcccceeEEEE
Q 013189 302 ALDEADRMLDMG--FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF--LANYIFLAVGRVGSSTDLIVQRVE 377 (448)
Q Consensus 302 VlDEah~ll~~g--f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~--l~~~~~i~v~~~~~~~~~i~q~~~ 377 (448)
|+||||+..+|| |++++..+-...... ....-+.++||.+++|++-+..- |++|+-++-- ..-..++...++
T Consensus 146 vVDEAHCVSQWGHDFRPDYL~LG~LRS~~--~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT--P~FR~NLFYD~~ 221 (641)
T KOG0352|consen 146 VVDEAHCVSQWGHDFRPDYLTLGSLRSVC--PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT--PTFRDNLFYDNH 221 (641)
T ss_pred EechhhhHhhhccccCcchhhhhhHHhhC--CCCceEEeecccChhHHHHHHHHHhhcCcHHhccC--cchhhhhhHHHH
Confidence 999999999998 999998876654222 34568999999999999866554 4577654321 111122211111
Q ss_pred Eec-ccchHHHHHHHHHHHHh------cCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHH
Q 013189 378 FVH-ESDKRSHLMDLLHAQVA------NGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 378 ~~~-~~~k~~~L~~ll~~~~~------~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~ 446 (448)
+-. -.+-...|.++-....- ....+..+-.||||.|+++|++++-.|...|+++.+||.++...||..+
T Consensus 222 ~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeV 297 (641)
T KOG0352|consen 222 MKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEV 297 (641)
T ss_pred HHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHH
Confidence 100 12334455555433211 1111224568999999999999999999999999999999999999765
No 73
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=3.1e-23 Score=221.12 Aligned_cols=130 Identities=21% Similarity=0.225 Sum_probs=109.8
Q ss_pred CCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013189 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~ 243 (448)
|+ .|+++|..+++.+..|+ ++.++||+|||++|++|++...+. ++.++|++||++||.|.++.+
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~-------------G~~v~VvTpt~~LA~qd~e~~ 139 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE-------------GKGVHLITVNDYLAKRDAEEM 139 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc-------------CCCeEEEeCCHHHHHHHHHHH
Confidence 44 89999999999988887 999999999999999999865543 345999999999999999999
Q ss_pred HHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHH-HHHHhccc------ccCCCeeEEEEecCCccC
Q 013189 244 KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQMIRYLALDEADRML 310 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L-~~~l~~~~------~~l~~v~~lVlDEah~ll 310 (448)
..+....++++.+++|+.+...+.+. ...+||+|+||++| .|+|..+. ..+..+.++||||||.||
T Consensus 140 ~~l~~~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 140 GQVYEFLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HHHHhhcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 99999999999999999985444443 45699999999999 66665432 346889999999999985
No 74
>PRK13766 Hef nuclease; Provisional
Probab=99.91 E-value=1.9e-22 Score=221.63 Aligned_cols=161 Identities=24% Similarity=0.214 Sum_probs=125.7
Q ss_pred CCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013189 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~ 243 (448)
+..+|+++|..++..++.+ |+++++|||+|||+++++++...+. . .+.++|||+||++|+.|+.+.+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~-~-----------~~~~vLvl~Pt~~L~~Q~~~~~ 78 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH-K-----------KGGKVLILAPTKPLVEQHAEFF 78 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH-h-----------CCCeEEEEeCcHHHHHHHHHHH
Confidence 3447899999999888776 9999999999999999998887662 1 1246999999999999999999
Q ss_pred HHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHH
Q 013189 244 KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQ 323 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~ 323 (448)
+++......++..++|+...... ..+....+|+|+||+.+...+....+.+.++++|||||||++........+...+.
T Consensus 79 ~~~~~~~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~ 157 (773)
T PRK13766 79 RKFLNIPEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYH 157 (773)
T ss_pred HHHhCCCCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHH
Confidence 99865545677888887776543 34445679999999999988887888899999999999999876433333333332
Q ss_pred HcCCCCCCCceEEEEeccC
Q 013189 324 QMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 324 ~l~~~~~~~~q~i~~SAT~ 342 (448)
.. ....++++||||.
T Consensus 158 ~~----~~~~~il~lTaTP 172 (773)
T PRK13766 158 ED----AKNPLVLGLTASP 172 (773)
T ss_pred hc----CCCCEEEEEEcCC
Confidence 22 2345799999996
No 75
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.91 E-value=6e-23 Score=217.02 Aligned_cols=129 Identities=22% Similarity=0.218 Sum_probs=100.1
Q ss_pred CCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
.|+++|......+.. ..++.++||+|||++|++|++...+.. +.++|++|+++||.|.++.+..+
T Consensus 70 rpydVQlig~l~l~~--G~Iaem~TGeGKTLta~Lpa~l~aL~g-------------~~V~VVTpn~yLA~Rdae~m~~l 134 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQ--GNIAEMKTGEGKTLTATMPLYLNALTG-------------KGAMLVTTNDYLAKRDAEEMGPV 134 (762)
T ss_pred CccHHHHHHHHHhcC--CceeEecCCcchHHHHHHHHHHHhhcC-------------CceEEeCCCHHHHHHHHHHHHHH
Confidence 455555555554444 479999999999999999987655432 34999999999999999999999
Q ss_pred cccCCcEEEEEECCCC---HHHHHHHHhcCCcEEEeChhHH-HHHHhcc------cccCCCeeEEEEecCCccC
Q 013189 247 SYQTGVKVVVAYGGAP---INQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML 310 (448)
Q Consensus 247 ~~~~~~~~~~~~gg~~---~~~~~~~l~~~~~Ilv~TP~~L-~~~l~~~------~~~l~~v~~lVlDEah~ll 310 (448)
....++++.+++++.. ...+.+....+|||+|+||++| .++|... ...+..+.++||||||.||
T Consensus 135 ~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 135 YEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred HhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHh
Confidence 9999999998887632 3333445556899999999999 5666332 2347889999999999985
No 76
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.91 E-value=7.1e-23 Score=215.26 Aligned_cols=129 Identities=19% Similarity=0.190 Sum_probs=109.6
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
..|+++|..+.+.+..|+ ++.++||+|||++|.+|++-..+.. ..++|++||++||.|.++.+.+
T Consensus 55 ~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G-------------~~V~VvTpt~~LA~qdae~~~~ 119 (745)
T TIGR00963 55 MRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTG-------------KGVHVVTVNDYLAQRDAEWMGQ 119 (745)
T ss_pred CCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhC-------------CCEEEEcCCHHHHHHHHHHHHH
Confidence 479999999999888776 9999999999999999996444321 2399999999999999999999
Q ss_pred hcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHH-HHHHhcc------cccCCCeeEEEEecCCccCc
Q 013189 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRMLD 311 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L-~~~l~~~------~~~l~~v~~lVlDEah~ll~ 311 (448)
+....++++.+++|+.+...+... ..+||+|+||++| .+++..+ .+.+..+.++||||+|.|+-
T Consensus 120 l~~~LGLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 120 VYRFLGLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred HhccCCCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 999999999999999886544333 3589999999999 9998765 34678999999999998863
No 77
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.90 E-value=1.2e-22 Score=224.59 Aligned_cols=236 Identities=19% Similarity=0.240 Sum_probs=155.1
Q ss_pred hHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcC----cHHHHHHHHHHHHH-hcc
Q 013189 174 HAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP----TRELSSQIHVEAKK-FSY 248 (448)
Q Consensus 174 ~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P----treLa~qi~~~~~~-~~~ 248 (448)
+.+..+..++.++++|+||||||+ ++|.+.. ..+ ......++|..| +++||.+|.+++.. ++.
T Consensus 81 ~Il~ai~~~~VviI~GeTGSGKTT--qlPq~ll--e~g--------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~ 148 (1294)
T PRK11131 81 DILEAIRDHQVVIVAGETGSGKTT--QLPKICL--ELG--------RGVKGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1294)
T ss_pred HHHHHHHhCCeEEEECCCCCCHHH--HHHHHHH--HcC--------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc
Confidence 344556677788999999999999 6784422 111 111234566667 46888888887764 333
Q ss_pred cCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCC-ccCcCCCHHH-HHHHHHHcC
Q 013189 249 QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEAD-RMLDMGFEPQ-IRKIVQQMD 326 (448)
Q Consensus 249 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah-~ll~~gf~~~-i~~i~~~l~ 326 (448)
..|+++. + .. ....+++|+|+|||+|++.+....+ ++++++||||||| ++++.+|... +..++..
T Consensus 149 ~VGY~vr--f-----~~---~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-- 215 (1294)
T PRK11131 149 CVGYKVR--F-----ND---QVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPR-- 215 (1294)
T ss_pred eeceeec--C-----cc---ccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhc--
Confidence 3233221 1 11 1234689999999999999987654 9999999999999 6889888643 3332221
Q ss_pred CCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccc---hHHH---HHHHHHHHHhcCC
Q 013189 327 MPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD---KRSH---LMDLLHAQVANGV 400 (448)
Q Consensus 327 ~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~---k~~~---L~~ll~~~~~~~~ 400 (448)
.++.|+|+||||++.+ .+.+.|...++ +.+... ...+.++|..+...+ +... +++.+.....
T Consensus 216 ---rpdlKvILmSATid~e--~fs~~F~~apv-I~V~Gr---~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~--- 283 (1294)
T PRK11131 216 ---RPDLKVIITSATIDPE--RFSRHFNNAPI-IEVSGR---TYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGR--- 283 (1294)
T ss_pred ---CCCceEEEeeCCCCHH--HHHHHcCCCCE-EEEcCc---cccceEEEeecccccchhhHHHHHHHHHHHHHHhc---
Confidence 2468999999999754 66666655554 333221 122445554443211 2233 3333332211
Q ss_pred CCCCccEEEEeCchHHHHHHHHHHHHCCCC---eEEecCCCCHHHHHHHh
Q 013189 401 HGKQALTLVFVETKKGADALEHWLYMNGFP---ATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 401 ~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~---~~~iHg~~~q~eR~~~l 447 (448)
...+.+||||+++++++.+++.|...+++ +..+||+|++++|.+++
T Consensus 284 -~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf 332 (1294)
T PRK11131 284 -EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVF 332 (1294)
T ss_pred -CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHh
Confidence 12567999999999999999999988765 67899999999999875
No 78
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=2e-21 Score=207.01 Aligned_cols=127 Identities=22% Similarity=0.211 Sum_probs=105.6
Q ss_pred CCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
.|.++|--.--.+..| -|+.++||+|||++|.+|++..++.. ..++||+||++||.|.++.+..+
T Consensus 82 ~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~G-------------~~V~VvTpn~yLA~qd~e~m~~l 146 (896)
T PRK13104 82 RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAISG-------------RGVHIVTVNDYLAKRDSQWMKPI 146 (896)
T ss_pred CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhcC-------------CCEEEEcCCHHHHHHHHHHHHHH
Confidence 5677776655555444 48999999999999999999776532 23999999999999999999999
Q ss_pred cccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHH-HHHHhcc-cccC-----CCeeEEEEecCCccC
Q 013189 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA-RVSL-----QMIRYLALDEADRML 310 (448)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L-~~~l~~~-~~~l-----~~v~~lVlDEah~ll 310 (448)
...+++++.+++||.+...+.... .+||+|+||++| .|+|..+ .+++ ..+.++||||||.||
T Consensus 147 ~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 147 YEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred hcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 999999999999998877664443 589999999999 9999876 3444 589999999999986
No 79
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=2.1e-22 Score=214.12 Aligned_cols=148 Identities=15% Similarity=0.216 Sum_probs=131.5
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---CHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCC
Q 013189 148 AEIDLGEALNLNIR-----RCKYVKP---TPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGS 219 (448)
Q Consensus 148 ~~~~l~~~l~~~l~-----~~~~~~p---t~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~ 219 (448)
+.+.+.+++...+. .+||..| +|+|.++||.+..++|++++++||+|||++|++|++..++...
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~-------- 136 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK-------- 136 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC--------
Confidence 46788888888776 6799999 9999999999999999999999999999999999998776421
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHH-HHHHhcccccCC--
Q 013189 220 RTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERARVSLQ-- 296 (448)
Q Consensus 220 ~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L-~~~l~~~~~~l~-- 296 (448)
.++||+||++||.|+++.+..+....++++.+++||.+...+...+ +|||+|+||++| +++++.+.+.++
T Consensus 137 -----~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~ 209 (970)
T PRK12899 137 -----PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKE 209 (970)
T ss_pred -----CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHH
Confidence 2899999999999999999999998999999999999998887655 599999999999 999988766655
Q ss_pred -----CeeEEEEecCCccC
Q 013189 297 -----MIRYLALDEADRML 310 (448)
Q Consensus 297 -----~v~~lVlDEah~ll 310 (448)
.+.++||||||.||
T Consensus 210 ~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 210 EQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HhhcccccEEEEechhhhh
Confidence 45899999999986
No 80
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.88 E-value=1.8e-21 Score=184.97 Aligned_cols=268 Identities=16% Similarity=0.253 Sum_probs=191.5
Q ss_pred ccCCCCHHHHHHHH-HCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceE
Q 013189 148 AEIDLGEALNLNIR-RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLA 226 (448)
Q Consensus 148 ~~~~l~~~l~~~l~-~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~ 226 (448)
++++.+.+....|+ .+...+++|.|..+|...+.+.|++++.|||.||++||+||+|. ....+
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~----------------adg~a 137 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC----------------ADGFA 137 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh----------------cCCce
Confidence 45667777766666 45778999999999999999999999999999999999999883 33569
Q ss_pred EEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHH---HHhc---CCcEEEeChhHHHH---HHhc--ccccC
Q 013189 227 LILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLR---ELER---GVDILVATPGRLVD---LLER--ARVSL 295 (448)
Q Consensus 227 lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~---~~~Ilv~TP~~L~~---~l~~--~~~~l 295 (448)
||+||...|+.++.-.++++ ++....+....+..+..+ .+.+ ...+|+.||+.+.. ++.+ ..+..
T Consensus 138 lvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~ 213 (695)
T KOG0353|consen 138 LVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEA 213 (695)
T ss_pred EeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999998889886 455555544444333222 2222 35799999999843 2222 33567
Q ss_pred CCeeEEEEecCCccCcCC--CHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCccccee
Q 013189 296 QMIRYLALDEADRMLDMG--FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIV 373 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~g--f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~ 373 (448)
..+.++.+||+|+-.+|| |++++..+--.-+. -+...+|.++||.+..|..-+.+.+.-...+ ..+.+...+++.
T Consensus 214 ~~~~~iaidevhccsqwghdfr~dy~~l~ilkrq--f~~~~iigltatatn~vl~d~k~il~ie~~~-tf~a~fnr~nl~ 290 (695)
T KOG0353|consen 214 GFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQ--FKGAPIIGLTATATNHVLDDAKDILCIEAAF-TFRAGFNRPNLK 290 (695)
T ss_pred ceeEEEeecceeehhhhCcccCcchHHHHHHHHh--CCCCceeeeehhhhcchhhHHHHHHhHHhhh-eeecccCCCCce
Confidence 889999999999999998 88887654322211 2346699999999999888888776421111 112233344444
Q ss_pred EEEEEecc--cchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHH
Q 013189 374 QRVEFVHE--SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTS 444 (448)
Q Consensus 374 q~~~~~~~--~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~ 444 (448)
..+..-+. .+=.+.+..+++... .+...||||-+++.|+.++..|..+|+.+-.||..|.+++|.
T Consensus 291 yev~qkp~n~dd~~edi~k~i~~~f------~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks 357 (695)
T KOG0353|consen 291 YEVRQKPGNEDDCIEDIAKLIKGDF------AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKS 357 (695)
T ss_pred eEeeeCCCChHHHHHHHHHHhcccc------CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccc
Confidence 33322221 222334444444433 266789999999999999999999999999999999998874
No 81
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.87 E-value=2.5e-20 Score=184.15 Aligned_cols=177 Identities=19% Similarity=0.151 Sum_probs=140.4
Q ss_pred CCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013189 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~ 243 (448)
+...++.+|......++.+ |++++.|||.|||++.++.+..++.+.+ + ++|+|+||+-|+.|..+.+
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~-----------~-kvlfLAPTKPLV~Qh~~~~ 78 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG-----------G-KVLFLAPTKPLVLQHAEFC 78 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC-----------C-eEEEecCCchHHHHHHHHH
Confidence 3446788898888776655 9999999999999999998888776543 2 6999999999999999999
Q ss_pred HHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHH
Q 013189 244 KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQ 323 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~ 323 (448)
+++...+.-.++.++|.....+....+.+ ..|+|+||+.+.+-|..+.+++.++.+||+||||+-....-.-.+.+-+.
T Consensus 79 ~~v~~ip~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~ 157 (542)
T COG1111 79 RKVTGIPEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYL 157 (542)
T ss_pred HHHhCCChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHH
Confidence 99987777788899998888777777666 49999999999999999999999999999999999876543333333222
Q ss_pred HcCCCCCCCceEEEEeccC---ChHHHHHHHHhhcCcE
Q 013189 324 QMDMPPPGMRQTMLFSATF---PKEIQRLASDFLANYI 358 (448)
Q Consensus 324 ~l~~~~~~~~q~i~~SAT~---~~~v~~l~~~~l~~~~ 358 (448)
.- ..+..++++|||. ...+++.+.+..-..+
T Consensus 158 ~~----~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~v 191 (542)
T COG1111 158 RS----AKNPLILGLTASPGSDLEKIQEVVENLGIEKV 191 (542)
T ss_pred Hh----ccCceEEEEecCCCCCHHHHHHHHHhCCcceE
Confidence 22 3455699999998 4556677766543333
No 82
>PRK09694 helicase Cas3; Provisional
Probab=99.87 E-value=1.3e-20 Score=204.52 Aligned_cols=261 Identities=16% Similarity=0.142 Sum_probs=161.1
Q ss_pred CCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013189 165 YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 165 ~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~ 244 (448)
...|+|+|+.+........-+++.||||+|||.+.++.+.. ++... ....++|.+||+++++|++++++
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~-l~~~~----------~~~gi~~aLPT~Atan~m~~Rl~ 352 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWR-LIDQG----------LADSIIFALPTQATANAMLSRLE 352 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHH-HHHhC----------CCCeEEEECcHHHHHHHHHHHHH
Confidence 45899999988655444567899999999999998776553 33221 12359999999999999999998
Q ss_pred Hhccc--CCcEEEEEECCCCHHHHHH--------------------HH----hc---CCcEEEeChhHHHHHHhccc-cc
Q 013189 245 KFSYQ--TGVKVVVAYGGAPINQQLR--------------------EL----ER---GVDILVATPGRLVDLLERAR-VS 294 (448)
Q Consensus 245 ~~~~~--~~~~~~~~~gg~~~~~~~~--------------------~l----~~---~~~Ilv~TP~~L~~~l~~~~-~~ 294 (448)
++... ....+.+++|......... .+ .+ -.+|+|||+.+++..+...+ ..
T Consensus 353 ~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~ 432 (878)
T PRK09694 353 ALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRF 432 (878)
T ss_pred HHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHH
Confidence 75421 1356777777654321111 11 11 15899999999986554322 11
Q ss_pred CCC----eeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcC---------cEEEE
Q 013189 295 LQM----IRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN---------YIFLA 361 (448)
Q Consensus 295 l~~----v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~---------~~~i~ 361 (448)
+.. -++|||||+|.+ +......+..+++.+. .....+|+||||+|..+++.+...+.. |-.+.
T Consensus 433 lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~---~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt 508 (878)
T PRK09694 433 IRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQA---QAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLIT 508 (878)
T ss_pred HHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHH---hcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccc
Confidence 222 258999999976 4334445666666553 234569999999998876533322111 00000
Q ss_pred e-c-----cccCccc----ceeEEE--EEe--cccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC
Q 013189 362 V-G-----RVGSSTD----LIVQRV--EFV--HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN 427 (448)
Q Consensus 362 v-~-----~~~~~~~----~i~q~~--~~~--~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~ 427 (448)
. . ....... .....+ ... ........+++.+..... .++++||||||++.|+.+++.|+..
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~-----~g~~vLVf~NTV~~Aq~ly~~L~~~ 583 (878)
T PRK09694 509 WRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAAN-----AGAQVCLICNLVDDAQKLYQRLKEL 583 (878)
T ss_pred ccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHh-----cCCEEEEEECCHHHHHHHHHHHHhh
Confidence 0 0 0000000 011111 111 111122333333333221 2678999999999999999999876
Q ss_pred C---CCeEEecCCCCHHHHHH
Q 013189 428 G---FPATTIHGDRTQQRTSI 445 (448)
Q Consensus 428 g---~~~~~iHg~~~q~eR~~ 445 (448)
+ .++..+||.+++.+|.+
T Consensus 584 ~~~~~~v~llHsrf~~~dR~~ 604 (878)
T PRK09694 584 NNTQVDIDLFHARFTLNDRRE 604 (878)
T ss_pred CCCCceEEEEeCCCCHHHHHH
Confidence 4 68999999999999953
No 83
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.87 E-value=1.1e-20 Score=171.73 Aligned_cols=187 Identities=43% Similarity=0.640 Sum_probs=156.2
Q ss_pred CCCCCCCHHHHhHhhhHhcC-CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013189 163 CKYVKPTPVQRHAIPISIGG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 163 ~~~~~pt~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~ 241 (448)
.++.+|++.|.+++..+... ++++++++||+|||.++..+++..+.... ...+||++|++.++.|+.+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-----------~~~~l~~~p~~~~~~~~~~ 72 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-----------GKRVLVLVPTRELAEQWAE 72 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-----------CCcEEEEeCCHHHHHHHHH
Confidence 46788999999999999988 99999999999999999999888765432 2359999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCCHHHHHHHHhcCC-cEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHH
Q 013189 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRK 320 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~-~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~ 320 (448)
.+.++...........+++.........+..+. +|+++|++.|.+.+.........++++||||+|.+....+...+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 152 (201)
T smart00487 73 ELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEK 152 (201)
T ss_pred HHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHH
Confidence 999887554434555566666566666666666 9999999999999988777788899999999999987678888888
Q ss_pred HHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEecc
Q 013189 321 IVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGR 364 (448)
Q Consensus 321 i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~ 364 (448)
++..+ +...+++++|||++..+...+..++.+.+.+....
T Consensus 153 ~~~~~----~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 153 LLKLL----PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HHHhC----CccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 88877 55678999999999999999999888777766543
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.87 E-value=4.1e-20 Score=198.45 Aligned_cols=249 Identities=18% Similarity=0.170 Sum_probs=165.1
Q ss_pred CCCHHHHhHhhhHhc---CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013189 167 KPTPVQRHAIPISIG---GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~---g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~ 243 (448)
.+|+.|++++..+.. .++++++++||||||.+|+.++...+.. +.++|||+||++|+.|+++.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-------------g~~vLvLvPt~~L~~Q~~~~l 210 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-------------GKQALVLVPEIALTPQMLARF 210 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-------------CCeEEEEeCcHHHHHHHHHHH
Confidence 589999999999887 4789999999999999998877665532 246999999999999999999
Q ss_pred HHhcccCCcEEEEEECCCCHHHHHHHH---h-cCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCC---CHH
Q 013189 244 KKFSYQTGVKVVVAYGGAPINQQLREL---E-RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG---FEP 316 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~g---f~~ 316 (448)
++.. +.++.+++++.+..++...+ . ..++|+|+|++.+. ..+.++.+|||||+|...-.. ..-
T Consensus 211 ~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y 280 (679)
T PRK05580 211 RARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRY 280 (679)
T ss_pred HHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCC
Confidence 8753 56888999998876554433 2 34899999998874 357899999999999764321 111
Q ss_pred HHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccc-------hHHHHH
Q 013189 317 QIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD-------KRSHLM 389 (448)
Q Consensus 317 ~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~-------k~~~L~ 389 (448)
+.+.+...... ..+.|+|++|||.+.+....+.. ..+..+.............-.+....... -...|+
T Consensus 281 ~~r~va~~ra~--~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~ 356 (679)
T PRK05580 281 HARDLAVVRAK--LENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLL 356 (679)
T ss_pred cHHHHHHHHhh--ccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHH
Confidence 23333222211 34678999999988776655432 12223222211111111111122221111 113455
Q ss_pred HHHHHHHhcCCCCCCccEEEEeCch-------------------------------------------------------
Q 013189 390 DLLHAQVANGVHGKQALTLVFVETK------------------------------------------------------- 414 (448)
Q Consensus 390 ~ll~~~~~~~~~~~~~~~IIF~~t~------------------------------------------------------- 414 (448)
+.+..... ++.++|||+|++
T Consensus 357 ~~i~~~l~-----~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~ 431 (679)
T PRK05580 357 EAIKQRLE-----RGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTD 431 (679)
T ss_pred HHHHHHHH-----cCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCe
Confidence 55554432 256789998862
Q ss_pred -----HHHHHHHHHHHHC--CCCeEEecCCCCH--HHHHHHh
Q 013189 415 -----KGADALEHWLYMN--GFPATTIHGDRTQ--QRTSIEI 447 (448)
Q Consensus 415 -----~~a~~l~~~L~~~--g~~~~~iHg~~~q--~eR~~~l 447 (448)
..++.+++.|... +.++..+|+|+++ .+|+++|
T Consensus 432 l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l 473 (679)
T PRK05580 432 LVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLL 473 (679)
T ss_pred eEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHH
Confidence 2567888888876 8899999999975 4566554
No 85
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=2.5e-20 Score=198.48 Aligned_cols=128 Identities=20% Similarity=0.189 Sum_probs=106.8
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
..|.++|--.--++..|+ ++.++||+|||+++.+|++-..+.. ..+-|++||.+||.|.++.+..
T Consensus 80 ~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G-------------~~V~IvTpn~yLA~rd~e~~~~ 144 (830)
T PRK12904 80 MRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTG-------------KGVHVVTVNDYLAKRDAEWMGP 144 (830)
T ss_pred CCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcC-------------CCEEEEecCHHHHHHHHHHHHH
Confidence 368888888776666664 9999999999999999996433321 1277999999999999999999
Q ss_pred hcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHH-HHHHhccc------ccCCCeeEEEEecCCccC
Q 013189 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQMIRYLALDEADRML 310 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L-~~~l~~~~------~~l~~v~~lVlDEah~ll 310 (448)
+....++++.+++++.+...+.... .+||+|+||++| .|+|+.+. ..+..+.++||||||.||
T Consensus 145 l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 145 LYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred HHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 9999999999999999887766554 489999999999 99997654 236789999999999885
No 86
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.85 E-value=1.2e-19 Score=201.62 Aligned_cols=250 Identities=18% Similarity=0.187 Sum_probs=163.6
Q ss_pred CCCCCCHHHH---hHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013189 164 KYVKPTPVQR---HAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 164 ~~~~pt~~Q~---~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~ 240 (448)
.|...-|+.+ +.+..+..++.++++|+||||||+ ++|.+. +..+ .....+++++.|.|--|..++
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~l--le~~--------~~~~~~I~~tQPRRlAA~svA 128 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKIC--LELG--------RGSHGLIGHTQPRRLAARTVA 128 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHH--HHcC--------CCCCceEecCCccHHHHHHHH
Confidence 4444455544 344455567789999999999999 567553 2211 112346788899999888888
Q ss_pred HHHHHhc-ccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCC-ccCcCCCHHH-
Q 013189 241 VEAKKFS-YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEAD-RMLDMGFEPQ- 317 (448)
Q Consensus 241 ~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah-~ll~~gf~~~- 317 (448)
..+.+.. ...+..|........ + ......|+|+|+|+|++.+.... .+..+++||||||| ++++.+|.-.
T Consensus 129 ~RvA~elg~~lG~~VGY~vR~~~---~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~l 201 (1283)
T TIGR01967 129 QRIAEELGTPLGEKVGYKVRFHD---Q---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGY 201 (1283)
T ss_pred HHHHHHhCCCcceEEeeEEcCCc---c---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHH
Confidence 7766543 222323222111111 1 13457899999999999987755 48999999999999 5888887654
Q ss_pred HHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecc------cchHHHHHHH
Q 013189 318 IRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE------SDKRSHLMDL 391 (448)
Q Consensus 318 i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~------~~k~~~L~~l 391 (448)
++.++.. .++.|+|+||||++. ..+.+.|...++ +.+... ...+..+|..... .++...+.+.
T Consensus 202 Lk~il~~-----rpdLKlIlmSATld~--~~fa~~F~~apv-I~V~Gr---~~PVev~Y~~~~~~~~~~~~~~~~~i~~~ 270 (1283)
T TIGR01967 202 LKQLLPR-----RPDLKIIITSATIDP--ERFSRHFNNAPI-IEVSGR---TYPVEVRYRPLVEEQEDDDLDQLEAILDA 270 (1283)
T ss_pred HHHHHhh-----CCCCeEEEEeCCcCH--HHHHHHhcCCCE-EEECCC---cccceeEEecccccccchhhhHHHHHHHH
Confidence 4555433 246799999999974 466666655554 333211 1123333433321 1234455555
Q ss_pred HHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCC---CCeEEecCCCCHHHHHHHh
Q 013189 392 LHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG---FPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 392 l~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g---~~~~~iHg~~~q~eR~~~l 447 (448)
+...... ..+.+||||+++++++.+++.|...+ +.+..+||+|++++|.+++
T Consensus 271 I~~l~~~----~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf 325 (1283)
T TIGR01967 271 VDELFAE----GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVF 325 (1283)
T ss_pred HHHHHhh----CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHh
Confidence 5443221 25679999999999999999998875 4588999999999999875
No 87
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.83 E-value=4.6e-19 Score=184.58 Aligned_cols=176 Identities=18% Similarity=0.154 Sum_probs=131.3
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcC
Q 013189 152 LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP 231 (448)
Q Consensus 152 l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 231 (448)
+++...+.+.--....++.+|.+.+..++ |+|++|++|||+|||+++...+++++-+.+ ..++|+++|
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p-----------~~KiVF~aP 114 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP-----------KGKVVFLAP 114 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC-----------cceEEEeeC
Confidence 44444444444455678999999998888 999999999999999999998888875533 257999999
Q ss_pred cHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhccccc-CCCeeEEEEecCCccC
Q 013189 232 TRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVS-LQMIRYLALDEADRML 310 (448)
Q Consensus 232 treLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~-l~~v~~lVlDEah~ll 310 (448)
|+-|+.|+...+..++.. ..+....||.........+-...+|+|+||+.|.+.|..+..+ |+.+.++||||||+-.
T Consensus 115 ~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~ 192 (746)
T KOG0354|consen 115 TRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTS 192 (746)
T ss_pred CchHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEccccccc
Confidence 999999999777777654 5556666664443333455556899999999999999876543 6999999999999987
Q ss_pred cCC-CHHHHHHHHHHcCCCCCCCceEEEEeccCChH
Q 013189 311 DMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 311 ~~g-f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
... |...++..+..- ....|+|++|||+..+
T Consensus 193 kn~~Y~~Vmr~~l~~k----~~~~qILgLTASpG~~ 224 (746)
T KOG0354|consen 193 KNHPYNNIMREYLDLK----NQGNQILGLTASPGSK 224 (746)
T ss_pred ccccHHHHHHHHHHhh----hccccEEEEecCCCcc
Confidence 654 333333433332 2233999999997533
No 88
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.82 E-value=3.1e-19 Score=190.24 Aligned_cols=252 Identities=19% Similarity=0.208 Sum_probs=175.4
Q ss_pred CCCCCCHHHHhHhhhHhcC-CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013189 164 KYVKPTPVQRHAIPISIGG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~ 242 (448)
|+..++++|.......+.+ .++++|||||+|||...++.+|+.+-.+... ....+....++++++|+..||+.+...
T Consensus 306 g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~--dgs~nl~~fKIVYIAPmKaLvqE~Vgs 383 (1674)
T KOG0951|consen 306 GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRE--DGSVNLAPFKIVYIAPMKALVQEMVGS 383 (1674)
T ss_pred cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhccccc--ccceecccceEEEEeeHHHHHHHHHHH
Confidence 6777999999999988865 6799999999999999999999988654321 112233456799999999999999999
Q ss_pred HHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhccc--ccCCCeeEEEEecCCccCcCCCHHHHHH
Q 013189 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR--VSLQMIRYLALDEADRMLDMGFEPQIRK 320 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~--~~l~~v~~lVlDEah~ll~~gf~~~i~~ 320 (448)
+.+.....+++|..++|+.....+.- .+.+|+|+||+...-+-++.. -..+-++++|+||+|.+-| ...+.++.
T Consensus 384 fSkRla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhD-dRGpvLES 459 (1674)
T KOG0951|consen 384 FSKRLAPLGITVLELTGDSQLGKEQI---EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHD-DRGPVLES 459 (1674)
T ss_pred HHhhccccCcEEEEecccccchhhhh---hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhccc-ccchHHHH
Confidence 98888889999999999877544322 247999999999854444322 2346789999999996544 55677777
Q ss_pred HHHHcCC---CCCCCceEEEEeccCChHHHHHHHHhh-cCcEEEEeccccCcccceeEEEEEeccc--chH-HHHHHHHH
Q 013189 321 IVQQMDM---PPPGMRQTMLFSATFPKEIQRLASDFL-ANYIFLAVGRVGSSTDLIVQRVEFVHES--DKR-SHLMDLLH 393 (448)
Q Consensus 321 i~~~l~~---~~~~~~q~i~~SAT~~~~v~~l~~~~l-~~~~~i~v~~~~~~~~~i~q~~~~~~~~--~k~-~~L~~ll~ 393 (448)
|+.+... .....++++.+|||+|.-. +.+ .|+ .++..++..........+.|.|.-+.+. .|. .++-+...
T Consensus 460 IVaRt~r~ses~~e~~RlVGLSATLPNy~-DV~-~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~y 537 (1674)
T KOG0951|consen 460 IVARTFRRSESTEEGSRLVGLSATLPNYE-DVA-SFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACY 537 (1674)
T ss_pred HHHHHHHHhhhcccCceeeeecccCCchh-hhH-HHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHH
Confidence 7665522 2234578999999999652 222 333 3444444333344445566777666443 233 22333333
Q ss_pred HHHhcCCCCCCccEEEEeCchHHHHHHHHHHH
Q 013189 394 AQVANGVHGKQALTLVFVETKKGADALEHWLY 425 (448)
Q Consensus 394 ~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~ 425 (448)
.....+ .| ..++||||.+++++-..|..++
T Consensus 538 eKVm~~-ag-k~qVLVFVHsRkET~ktA~aIR 567 (1674)
T KOG0951|consen 538 EKVLEH-AG-KNQVLVFVHSRKETAKTARAIR 567 (1674)
T ss_pred HHHHHh-CC-CCcEEEEEEechHHHHHHHHHH
Confidence 322222 23 3789999999999888887766
No 89
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=5.6e-19 Score=186.99 Aligned_cols=241 Identities=15% Similarity=0.132 Sum_probs=153.8
Q ss_pred CCCCHHHHhHhhhHh-cC--CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISI-GG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~-~g--~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~ 242 (448)
..++|+|++++..+. ++ +..++++|||+|||++.+..+ ..+. ..+|||||+.+|+.|+.++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa-~~l~---------------k~tLILvps~~Lv~QW~~e 317 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAA-CTVK---------------KSCLVLCTSAVSVEQWKQQ 317 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHH-HHhC---------------CCEEEEeCcHHHHHHHHHH
Confidence 468999999998877 44 468999999999999976443 2221 2399999999999999999
Q ss_pred HHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcc--------cccCCCeeEEEEecCCccCcCCC
Q 013189 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA--------RVSLQMIRYLALDEADRMLDMGF 314 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~--------~~~l~~v~~lVlDEah~ll~~gf 314 (448)
+.++.......+..++|+.... .....+|+|+|+..+.....+. .+.-..+.+||+||||++..
T Consensus 318 f~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--- 389 (732)
T TIGR00603 318 FKMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--- 389 (732)
T ss_pred HHHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---
Confidence 9998654455666666653211 1123689999999875432211 12234678999999999854
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEeccCChHHH--HHHHHhhcCcEEEEeccccCccc----cee---------------
Q 013189 315 EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ--RLASDFLANYIFLAVGRVGSSTD----LIV--------------- 373 (448)
Q Consensus 315 ~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~--~l~~~~l~~~~~i~v~~~~~~~~----~i~--------------- 373 (448)
+.++.++..+. . ...+++|||+..+-. ..+. ++-.|........+.... .+.
T Consensus 390 -~~fr~il~~l~----a-~~RLGLTATP~ReD~~~~~L~-~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~ 462 (732)
T TIGR00603 390 -AMFRRVLTIVQ----A-HCKLGLTATLVREDDKITDLN-FLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYRE 462 (732)
T ss_pred -HHHHHHHHhcC----c-CcEEEEeecCcccCCchhhhh-hhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHH
Confidence 56777777762 2 236999999843211 1111 111222211111110000 000
Q ss_pred --------EEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHH
Q 013189 374 --------QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSI 445 (448)
Q Consensus 374 --------q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~ 445 (448)
..........|...+..++..+.. .+.++||||+++..++.+++.|. +..|||++++.||++
T Consensus 463 yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~-----~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~ 532 (732)
T TIGR00603 463 YLRENSRKRMLLYVMNPNKFRACQFLIRFHEQ-----RGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQ 532 (732)
T ss_pred HHHhcchhhhHHhhhChHHHHHHHHHHHHHhh-----cCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHH
Confidence 000111223455555556654421 26789999999999999999872 567999999999999
Q ss_pred Hh
Q 013189 446 EI 447 (448)
Q Consensus 446 ~l 447 (448)
+|
T Consensus 533 il 534 (732)
T TIGR00603 533 IL 534 (732)
T ss_pred HH
Confidence 86
No 90
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.8e-18 Score=186.62 Aligned_cols=175 Identities=23% Similarity=0.283 Sum_probs=138.7
Q ss_pred HHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013189 161 RRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 161 ~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~ 240 (448)
...+| .+-++|++++-++..+..+++|||||+|||++.-..+-..+.+. -++++++|.++|.+|.+
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~-------------qrviYTsPIKALsNQKy 179 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDG-------------QRVIYTSPIKALSNQKY 179 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcC-------------CceEeccchhhhhhhHH
Confidence 34455 68999999999999999999999999999999877776655432 24999999999999999
Q ss_pred HHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHH
Q 013189 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRK 320 (448)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~ 320 (448)
..+........-.+.+++|+..+. ....|+|.|.+.|.+++.++...+..+.+||+||+|.|-+......++.
T Consensus 180 rdl~~~fgdv~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE 252 (1041)
T COG4581 180 RDLLAKFGDVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEE 252 (1041)
T ss_pred HHHHHHhhhhhhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHH
Confidence 988764321122346677776543 3478999999999999999888899999999999999999888888899
Q ss_pred HHHHcCCCCCCCceEEEEeccCChH--HHHHHHHhhcCcEEE
Q 013189 321 IVQQMDMPPPGMRQTMLFSATFPKE--IQRLASDFLANYIFL 360 (448)
Q Consensus 321 i~~~l~~~~~~~~q~i~~SAT~~~~--v~~l~~~~l~~~~~i 360 (448)
++.++ |...|+|+||||.|.. ...++...-..++.+
T Consensus 253 ~Ii~l----P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~v 290 (1041)
T COG4581 253 VIILL----PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHV 290 (1041)
T ss_pred HHHhc----CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEE
Confidence 99999 8889999999999654 344444333334433
No 91
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.78 E-value=3.8e-18 Score=174.97 Aligned_cols=244 Identities=20% Similarity=0.204 Sum_probs=151.5
Q ss_pred CCCCCHHHHhHhhhHhc----CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013189 165 YVKPTPVQRHAIPISIG----GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 165 ~~~pt~~Q~~~i~~i~~----g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~ 240 (448)
..+++++|++++..+.+ .+..++++|||+|||.+++..+- .+ ...+||||||++|+.|..
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~-~~---------------~~~~Lvlv~~~~L~~Qw~ 97 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA-EL---------------KRSTLVLVPTKELLDQWA 97 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHH-Hh---------------cCCEEEEECcHHHHHHHH
Confidence 34699999999999887 88999999999999998765433 22 122999999999999998
Q ss_pred HHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHH
Q 013189 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRK 320 (448)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~ 320 (448)
+.+.++.... ..+.. ++|..... .. ..|+|+|.+.+........+......+||+||||++... ..+.
T Consensus 98 ~~~~~~~~~~-~~~g~-~~~~~~~~-----~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~----~~~~ 165 (442)
T COG1061 98 EALKKFLLLN-DEIGI-YGGGEKEL-----EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP----SYRR 165 (442)
T ss_pred HHHHHhcCCc-cccce-ecCceecc-----CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH----HHHH
Confidence 8777764322 12233 44433211 11 369999999987642112233457899999999999874 4455
Q ss_pred HHHHcCCCCCCCceEEEEeccCChHHHHHHHHh--hcCcEEEEeccccCcc----cceeEEEEEe---------------
Q 013189 321 IVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF--LANYIFLAVGRVGSST----DLIVQRVEFV--------------- 379 (448)
Q Consensus 321 i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~--l~~~~~i~v~~~~~~~----~~i~q~~~~~--------------- 379 (448)
+.+.+..+ ...+++|||++..-......+ +..++...+...+... .........+
T Consensus 166 ~~~~~~~~----~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~ 241 (442)
T COG1061 166 ILELLSAA----YPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESA 241 (442)
T ss_pred HHHhhhcc----cceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhh
Confidence 55555221 228999999753321111111 0111222221111100 0000000011
Q ss_pred -----------------------cccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecC
Q 013189 380 -----------------------HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHG 436 (448)
Q Consensus 380 -----------------------~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg 436 (448)
....+...+..++.... ...++||||.++.+++.++..|...++ +..+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~ 314 (442)
T COG1061 242 RFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHA------RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITG 314 (442)
T ss_pred hhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc------CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEEC
Confidence 00111122222222221 256899999999999999999998888 999999
Q ss_pred CCCHHHHHHHh
Q 013189 437 DRTQQRTSIEI 447 (448)
Q Consensus 437 ~~~q~eR~~~l 447 (448)
+.++.||+++|
T Consensus 315 ~t~~~eR~~il 325 (442)
T COG1061 315 ETPKEEREAIL 325 (442)
T ss_pred CCCHHHHHHHH
Confidence 99999999886
No 92
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=1.9e-17 Score=176.38 Aligned_cols=127 Identities=19% Similarity=0.203 Sum_probs=103.0
Q ss_pred CCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
.|.++|--.--.+.. --|+.++||.|||++|.+|++...+.. ..|.||+|+++||.|..+.+..+
T Consensus 82 ~~ydVQliGgl~L~~--G~IaEm~TGEGKTL~a~lp~~l~al~g-------------~~VhIvT~ndyLA~RD~e~m~~l 146 (908)
T PRK13107 82 RHFDVQLLGGMVLDS--NRIAEMRTGEGKTLTATLPAYLNALTG-------------KGVHVITVNDYLARRDAENNRPL 146 (908)
T ss_pred CcCchHHhcchHhcC--CccccccCCCCchHHHHHHHHHHHhcC-------------CCEEEEeCCHHHHHHHHHHHHHH
Confidence 577777755444444 458999999999999999998766543 23999999999999999999999
Q ss_pred cccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHH-HHHHhcc-cccC-----CCeeEEEEecCCccC
Q 013189 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA-RVSL-----QMIRYLALDEADRML 310 (448)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L-~~~l~~~-~~~l-----~~v~~lVlDEah~ll 310 (448)
....++++.+++++.+... +.-.-.|||+++||+.| .|+|..+ .++. ..+.++||||||.||
T Consensus 147 ~~~lGlsv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 147 FEFLGLTVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred HHhcCCeEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 9999999999999988633 22233689999999999 8988765 3333 778999999999886
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.78 E-value=1.7e-17 Score=172.40 Aligned_cols=226 Identities=19% Similarity=0.185 Sum_probs=143.2
Q ss_pred eEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHH
Q 013189 186 MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQ 265 (448)
Q Consensus 186 li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~ 265 (448)
++.++||||||.+|+..+.. ++.. +.++|||+|+++|+.|+++.+++.. +.++.+++++.+..+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~-~l~~------------g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~e 64 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEK-VLAL------------GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSE 64 (505)
T ss_pred CccCCCCCCHHHHHHHHHHH-HHHc------------CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHH
Confidence 46899999999999655433 3322 2359999999999999999998743 467888899887665
Q ss_pred HHHHH---hc-CCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCC---CHHHHHHHHHHcCCCCCCCceEEEE
Q 013189 266 QLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG---FEPQIRKIVQQMDMPPPGMRQTMLF 338 (448)
Q Consensus 266 ~~~~l---~~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~g---f~~~i~~i~~~l~~~~~~~~q~i~~ 338 (448)
..+.+ .. .++|+|+|+..|. ..+.++.+|||||+|...-.. ..-+.+.+...+.. ..+.++|++
T Consensus 65 r~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~--~~~~~vil~ 135 (505)
T TIGR00595 65 KLQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK--KFNCPVVLG 135 (505)
T ss_pred HHHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH--hcCCCEEEE
Confidence 43333 23 4799999998763 357889999999999875322 11122222222211 235789999
Q ss_pred eccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccch----HHHHHHHHHHHHhcCCCCCCccEEEEeCch
Q 013189 339 SATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDK----RSHLMDLLHAQVANGVHGKQALTLVFVETK 414 (448)
Q Consensus 339 SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k----~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~ 414 (448)
|||.+.+....+.. ..+..+...............+.......+ -..|++.+...... +.++|||+|++
T Consensus 136 SATPsles~~~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~-----g~qvLvflnrr 208 (505)
T TIGR00595 136 SATPSLESYHNAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAA-----GEQSILFLNRR 208 (505)
T ss_pred eCCCCHHHHHHHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHc-----CCcEEEEEeCC
Confidence 99977665544422 122222222111111112222222222211 13455555554422 66899998876
Q ss_pred HH------------------------------------------------------------HHHHHHHHHHC--CCCeE
Q 013189 415 KG------------------------------------------------------------ADALEHWLYMN--GFPAT 432 (448)
Q Consensus 415 ~~------------------------------------------------------------a~~l~~~L~~~--g~~~~ 432 (448)
.. ++.+++.|... +.++.
T Consensus 209 Gya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~ 288 (505)
T TIGR00595 209 GYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIA 288 (505)
T ss_pred cCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEE
Confidence 43 58888999877 78999
Q ss_pred EecCCCCHHHH
Q 013189 433 TIHGDRTQQRT 443 (448)
Q Consensus 433 ~iHg~~~q~eR 443 (448)
.+|+|+++.++
T Consensus 289 ~~d~d~~~~~~ 299 (505)
T TIGR00595 289 RIDSDTTSRKG 299 (505)
T ss_pred EEecccccCcc
Confidence 99999987765
No 94
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.75 E-value=3.8e-17 Score=170.84 Aligned_cols=152 Identities=22% Similarity=0.258 Sum_probs=126.8
Q ss_pred CCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
.+-.+|++||-++..|..++|.|+|.+|||+++-.+|-..- ....++||.+|-++|.+|-+..++.-
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq-------------~h~TR~iYTSPIKALSNQKfRDFk~t 363 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ-------------KHMTRTIYTSPIKALSNQKFRDFKET 363 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH-------------hhccceEecchhhhhccchHHHHHHh
Confidence 68899999999999999999999999999998765543211 12346999999999999999999874
Q ss_pred cccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcC
Q 013189 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD 326 (448)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~ 326 (448)
... +.+++|+..+.. ...+||.|.+.|.++|-++.--..++.+||+||+|.+-|....-.+++++-.|
T Consensus 364 F~D----vgLlTGDvqinP-------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMl- 431 (1248)
T KOG0947|consen 364 FGD----VGLLTGDVQINP-------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIML- 431 (1248)
T ss_pred ccc----cceeecceeeCC-------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeec-
Confidence 432 237788876543 37899999999999999887668999999999999999887777788888888
Q ss_pred CCCCCCceEEEEeccCChHH
Q 013189 327 MPPPGMRQTMLFSATFPKEI 346 (448)
Q Consensus 327 ~~~~~~~q~i~~SAT~~~~v 346 (448)
|.+.++|++|||.|...
T Consensus 432 ---P~HV~~IlLSATVPN~~ 448 (1248)
T KOG0947|consen 432 ---PRHVNFILLSATVPNTL 448 (1248)
T ss_pred ---cccceEEEEeccCCChH
Confidence 89999999999998654
No 95
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.73 E-value=2.3e-17 Score=168.63 Aligned_cols=233 Identities=21% Similarity=0.201 Sum_probs=165.8
Q ss_pred CCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
++.|+|..+|..+-++..++|+|.|.+|||.++-..|-..+... -++|+.+|-++|.+|-++++..-
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k-------------QRVIYTSPIKALSNQKYREl~~E 195 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK-------------QRVIYTSPIKALSNQKYRELLEE 195 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhc-------------CeEEeeChhhhhcchhHHHHHHH
Confidence 57899999999999999999999999999999887776655432 35999999999999999998764
Q ss_pred cccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcC
Q 013189 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD 326 (448)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~ 326 (448)
.. .|.+++|+..+.. ....||.|.+.|..+|-++.--+..|.|||+||+|.|-|....-.+++.+-.+
T Consensus 196 F~----DVGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIll- 263 (1041)
T KOG0948|consen 196 FK----DVGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILL- 263 (1041)
T ss_pred hc----ccceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEec-
Confidence 32 4667788776543 36899999999999999988789999999999999998765444455555556
Q ss_pred CCCCCCceEEEEeccCChHHH--HHHHHhhcCcEEEEeccccCcccceeEEEE----------Eeccc-----chHHHHH
Q 013189 327 MPPPGMRQTMLFSATFPKEIQ--RLASDFLANYIFLAVGRVGSSTDLIVQRVE----------FVHES-----DKRSHLM 389 (448)
Q Consensus 327 ~~~~~~~q~i~~SAT~~~~v~--~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~----------~~~~~-----~k~~~L~ 389 (448)
|++.+.+++|||+|...+ +|+......|.++..-.. . +...|+|. .+++. +.+...+
T Consensus 264 ---P~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdy-R--PTPLQHyifP~ggdGlylvVDek~~FrednF~~am 337 (1041)
T KOG0948|consen 264 ---PDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDY-R--PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAM 337 (1041)
T ss_pred ---cccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecC-C--CCcceeeeecCCCCeeEEEEecccccchHHHHHHH
Confidence 788899999999997754 344444456665543211 1 11223332 23322 2333333
Q ss_pred HHHHHHHhcC---C----------------------------CCCCccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 390 DLLHAQVANG---V----------------------------HGKQALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 390 ~ll~~~~~~~---~----------------------------~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
.-|....... . ..+..++|||+=++++|+.+|-.|.+..++
T Consensus 338 ~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN 409 (1041)
T KOG0948|consen 338 SVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFN 409 (1041)
T ss_pred HHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCC
Confidence 3333221111 0 001347999999999999999998776543
No 96
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.73 E-value=8.2e-16 Score=158.33 Aligned_cols=260 Identities=18% Similarity=0.219 Sum_probs=179.3
Q ss_pred CCCHHHHHHH-HHCCCCCCCHHHHhHhhhHhcC------CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCC
Q 013189 151 DLGEALNLNI-RRCKYVKPTPVQRHAIPISIGG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 151 ~l~~~l~~~l-~~~~~~~pt~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
.....+.+.+ ..+.| ++|..|+.++..|... .+=++++.-|||||++.++.++..+- ++
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~-------------~G 311 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE-------------AG 311 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH-------------cC
Confidence 3444555544 44454 7999999999988754 35689999999999999999998763 34
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHH---HHhcC-CcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLR---ELERG-VDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~~-~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.++..++||--||.|-++.+.++....++++..++|......... .+..| .+|+|+|-- |-+..+.++++.
T Consensus 312 ~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA-----LiQd~V~F~~Lg 386 (677)
T COG1200 312 YQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA-----LIQDKVEFHNLG 386 (677)
T ss_pred CeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch-----hhhcceeeccee
Confidence 569999999999999999999999999999999999877655444 34445 899999953 344567799999
Q ss_pred EEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEe
Q 013189 300 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFV 379 (448)
Q Consensus 300 ~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~ 379 (448)
++|+||=|++.- +=+..+...... ..-+++||||.=+... +-....|...-.++....-...|.-.. +
T Consensus 387 LVIiDEQHRFGV-----~QR~~L~~KG~~---~Ph~LvMTATPIPRTL--Alt~fgDldvS~IdElP~GRkpI~T~~--i 454 (677)
T COG1200 387 LVIIDEQHRFGV-----HQRLALREKGEQ---NPHVLVMTATPIPRTL--ALTAFGDLDVSIIDELPPGRKPITTVV--I 454 (677)
T ss_pred EEEEeccccccH-----HHHHHHHHhCCC---CCcEEEEeCCCchHHH--HHHHhccccchhhccCCCCCCceEEEE--e
Confidence 999999998633 333333333110 2348999999754433 333333322222221111112233222 2
Q ss_pred cccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHH--------HHHHHHHHHHC--CCCeEEecCCCCHHHHHHHh
Q 013189 380 HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKG--------ADALEHWLYMN--GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 380 ~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~--------a~~l~~~L~~~--g~~~~~iHg~~~q~eR~~~l 447 (448)
..++...+++.+..... ++.++.|.|+-+++ |+.+++.|... ++++..+||.|+..|++++|
T Consensus 455 -~~~~~~~v~e~i~~ei~-----~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM 526 (677)
T COG1200 455 -PHERRPEVYERIREEIA-----KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVM 526 (677)
T ss_pred -ccccHHHHHHHHHHHHH-----cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHH
Confidence 23455666666665543 27889999998764 45666777643 67799999999999999887
No 97
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.70 E-value=3.7e-16 Score=133.59 Aligned_cols=144 Identities=44% Similarity=0.574 Sum_probs=111.0
Q ss_pred CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCC
Q 013189 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAP 262 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~ 262 (448)
+++++.++||+|||..++..+...+... ...++||++|++.|+.|+.+.+..+... .+.+..+.+...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~-----------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~ 68 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-----------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTS 68 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc-----------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcc
Confidence 4689999999999999888777655431 2246999999999999999999987654 677888888777
Q ss_pred HHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccC
Q 013189 263 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 263 ~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
...+........+|+|+|++.+...+.........++++||||+|.+....+........... ....+++++|||+
T Consensus 69 ~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~----~~~~~~i~~saTp 144 (144)
T cd00046 69 IKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKL----PKDRQVLLLSATP 144 (144)
T ss_pred hhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhC----CccceEEEEeccC
Confidence 666665666779999999999998887766556788999999999987755444321122222 4557799999995
No 98
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.69 E-value=1.3e-15 Score=170.05 Aligned_cols=161 Identities=17% Similarity=0.222 Sum_probs=107.7
Q ss_pred CCCCHHHHhHhhhHh----c-CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISI----G-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~----~-g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~ 240 (448)
..++++|.+||..+. . .+..+++++||||||.+. +.++..+++.. ...++|||+|+++|+.|..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~~----------~~~rVLfLvDR~~L~~Qa~ 480 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKAK----------RFRRILFLVDRSALGEQAE 480 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhcC----------ccCeEEEEecHHHHHHHHH
Confidence 358999999998765 2 367999999999999874 34555555432 1246999999999999999
Q ss_pred HHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcc-----cccCCCeeEEEEecCCccCc----
Q 013189 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-----RVSLQMIRYLALDEADRMLD---- 311 (448)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~-----~~~l~~v~~lVlDEah~ll~---- 311 (448)
+.++.+.......+..+++...... ........|+|+|...|...+... ...+..+++||+||||+-..
T Consensus 481 ~~F~~~~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~ 558 (1123)
T PRK11448 481 DAFKDTKIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKE 558 (1123)
T ss_pred HHHHhcccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccc
Confidence 9999874322212111222111111 111234689999999998765321 24567889999999999531
Q ss_pred -----CC------CHHHHHHHHHHcCCCCCCCceEEEEeccCChH
Q 013189 312 -----MG------FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 312 -----~g------f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
.+ +...++.++.+++ ...|+||||....
T Consensus 559 ~~~~~~~~~~~~~~~~~yr~iL~yFd------A~~IGLTATP~r~ 597 (1123)
T PRK11448 559 MSEGELQFRDQLDYVSKYRRVLDYFD------AVKIGLTATPALH 597 (1123)
T ss_pred cccchhccchhhhHHHHHHHHHhhcC------ccEEEEecCCccc
Confidence 11 2356777887662 2479999998543
No 99
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.69 E-value=2.3e-15 Score=159.28 Aligned_cols=251 Identities=22% Similarity=0.287 Sum_probs=170.9
Q ss_pred HHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHH
Q 013189 157 NLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (448)
Q Consensus 157 ~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 236 (448)
-+.+.+....+|...|+--...+..|+..-+.||||.|||+--++..+- +.. .+-+++||+||+.|+
T Consensus 72 ~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~--~a~-----------kgkr~yii~PT~~Lv 138 (1187)
T COG1110 72 EEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLY--LAK-----------KGKRVYIIVPTTTLV 138 (1187)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHH--HHh-----------cCCeEEEEecCHHHH
Confidence 3444544445899999999999999999999999999999865544332 221 224699999999999
Q ss_pred HHHHHHHHHhcccCC-cEEEE-EECCCCHHHHHH---HHhc-CCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccC
Q 013189 237 SQIHVEAKKFSYQTG-VKVVV-AYGGAPINQQLR---ELER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRML 310 (448)
Q Consensus 237 ~qi~~~~~~~~~~~~-~~~~~-~~gg~~~~~~~~---~l~~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll 310 (448)
.|+++.+++|+...+ .++.+ .++..+..+... .+.+ ..||+|+|.+-|...++.- .--+++++++|++|.+|
T Consensus 139 ~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L--~~~kFdfifVDDVDA~L 216 (1187)
T COG1110 139 RQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL--SKLKFDFIFVDDVDAIL 216 (1187)
T ss_pred HHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh--cccCCCEEEEccHHHHH
Confidence 999999999985544 44444 445444443333 3333 4899999998887666532 12468899999999876
Q ss_pred cC-----------CCHHH-------HHHHHHHcC--------------------CCCCCCceEEEEeccCChHH--HHHH
Q 013189 311 DM-----------GFEPQ-------IRKIVQQMD--------------------MPPPGMRQTMLFSATFPKEI--QRLA 350 (448)
Q Consensus 311 ~~-----------gf~~~-------i~~i~~~l~--------------------~~~~~~~q~i~~SAT~~~~v--~~l~ 350 (448)
.. ||.+. +..+...+. ....+.-++|+.|||..+.- ..+.
T Consensus 217 kaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~Lf 296 (1187)
T COG1110 217 KASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLF 296 (1187)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHH
Confidence 43 34332 111111111 01123468999999984432 2333
Q ss_pred HHhhcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCc---hHHHHHHHHHHHHC
Q 013189 351 SDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVET---KKGADALEHWLYMN 427 (448)
Q Consensus 351 ~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t---~~~a~~l~~~L~~~ 427 (448)
+.. ..+.++.......||...|... .-...+.++++.. +.-.||||++ ++.|+.|+++|+.+
T Consensus 297 ReL----lgFevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~l--------G~GgLIfV~~d~G~e~aeel~e~Lr~~ 361 (1187)
T COG1110 297 REL----LGFEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKL--------GDGGLIFVPIDYGREKAEELAEYLRSH 361 (1187)
T ss_pred HHH----hCCccCccchhhhheeeeeccC---ccHHHHHHHHHHh--------CCCeEEEEEcHHhHHHHHHHHHHHHhc
Confidence 333 3345555556667777665544 4456667777765 3348999999 99999999999999
Q ss_pred CCCeEEecCC
Q 013189 428 GFPATTIHGD 437 (448)
Q Consensus 428 g~~~~~iHg~ 437 (448)
|+++..+|+.
T Consensus 362 Gi~a~~~~a~ 371 (1187)
T COG1110 362 GINAELIHAE 371 (1187)
T ss_pred CceEEEeecc
Confidence 9999999985
No 100
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.68 E-value=6e-16 Score=167.93 Aligned_cols=263 Identities=18% Similarity=0.121 Sum_probs=164.4
Q ss_pred CCHHHHhHhhhHhcC---C-CeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013189 168 PTPVQRHAIPISIGG---R-DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 168 pt~~Q~~~i~~i~~g---~-d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~ 243 (448)
..+.|..++..+... . .+++.||||+|||.+.+++++..+... .....+++++.|++.++.++++.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~---------~~~~~r~i~vlP~~t~ie~~~~r~ 266 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK---------IKLKSRVIYVLPFRTIIEDMYRRA 266 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc---------ccccceEEEEccHHHHHHHHHHHH
Confidence 478899999877643 4 788999999999999999988766542 124568999999999999999999
Q ss_pred HHhcccCCcEEEEEECCCCHHHHHHH-----Hh---------cCCcEEEeChhHHHHHHhc-cccc-C--CCeeEEEEec
Q 013189 244 KKFSYQTGVKVVVAYGGAPINQQLRE-----LE---------RGVDILVATPGRLVDLLER-ARVS-L--QMIRYLALDE 305 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~-----l~---------~~~~Ilv~TP~~L~~~l~~-~~~~-l--~~v~~lVlDE 305 (448)
+.+.....+.....++.......... .. ....+.++||-.+...... .... + -..+.+||||
T Consensus 267 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE 346 (733)
T COG1203 267 KEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDE 346 (733)
T ss_pred HhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhcc
Confidence 98765443333222333221111111 00 0134556666555542211 1111 1 1236799999
Q ss_pred CCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCc-ccceeE-EEEEecccc
Q 013189 306 ADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSS-TDLIVQ-RVEFVHESD 383 (448)
Q Consensus 306 ah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~-~~~i~q-~~~~~~~~~ 383 (448)
+|.+-+......+..++..+. .....+|++|||+|+.+.+.+...+.+...+........ .+.... ....++..+
T Consensus 347 ~h~~~~~~~~~~l~~~i~~l~---~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 423 (733)
T COG1203 347 VHLYADETMLAALLALLEALA---EAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVED 423 (733)
T ss_pred HHhhcccchHHHHHHHHHHHH---hCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhh
Confidence 998877533445555555553 234569999999999999988888765444333211000 000000 000011011
Q ss_pred hH-HHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 384 KR-SHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 384 k~-~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.. ..+...+.... .++.+++|.|||+..|..++..|+..+.++..|||.++..+|.+.+
T Consensus 424 ~~~~~~~~~~~~~~-----~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke 483 (733)
T COG1203 424 GPQEELIELISEEV-----KEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKE 483 (733)
T ss_pred hhhHhhhhcchhhh-----ccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHH
Confidence 10 01122222211 2378899999999999999999999887899999999999998764
No 101
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.65 E-value=3e-14 Score=134.86 Aligned_cols=232 Identities=19% Similarity=0.218 Sum_probs=164.4
Q ss_pred CCCHHHHhHhhhHh----cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013189 167 KPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~ 242 (448)
++||.|+.+-..++ +.+|+++.|-||+|||.. +++.++..++. +.++.|.+|....|..++.+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~------------G~~vciASPRvDVclEl~~R 163 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ------------GGRVCIASPRVDVCLELYPR 163 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc------------CCeEEEecCcccchHHHHHH
Confidence 58999998876543 578999999999999997 45666666543 35689999999999999999
Q ss_pred HHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHH
Q 013189 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~ 322 (448)
+++-. .+..+.++||+.....+ ..++|+|...|+.+-+ -++++|+||+|..--.. .+.+...+
T Consensus 164 lk~aF--~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~-d~~L~~Av 226 (441)
T COG4098 164 LKQAF--SNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSD-DQSLQYAV 226 (441)
T ss_pred HHHhh--ccCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh-------hccEEEEeccccccccC-CHHHHHHH
Confidence 98743 34678899998764322 5899999999987643 46789999999863211 24444444
Q ss_pred HHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHH-------HHHHHHHHH
Q 013189 323 QQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRS-------HLMDLLHAQ 395 (448)
Q Consensus 323 ~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~-------~L~~ll~~~ 395 (448)
+.-. ...--+|.+|||.+++++.-+.. .+...+.+.......+.+.-.+.++..-.|.- .|...|..+
T Consensus 227 ~~ar---k~~g~~IylTATp~k~l~r~~~~--g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq 301 (441)
T COG4098 227 KKAR---KKEGATIYLTATPTKKLERKILK--GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQ 301 (441)
T ss_pred HHhh---cccCceEEEecCChHHHHHHhhh--CCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHH
Confidence 4432 33445899999999887764433 23444455444444445555566665443332 677777777
Q ss_pred HhcCCCCCCccEEEEeCchHHHHHHHHHHHHC--CCCeEEecCCC
Q 013189 396 VANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDR 438 (448)
Q Consensus 396 ~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~--g~~~~~iHg~~ 438 (448)
..+ +.+++||+++++..++++..|... .....++|+.-
T Consensus 302 ~~~-----~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d 341 (441)
T COG4098 302 RKT-----GRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED 341 (441)
T ss_pred Hhc-----CCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC
Confidence 643 788999999999999999999543 33457888753
No 102
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.63 E-value=2.1e-14 Score=157.35 Aligned_cols=158 Identities=17% Similarity=0.110 Sum_probs=93.5
Q ss_pred CCCHHHHhHhhhHhcC--CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013189 167 KPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~ 244 (448)
.|.|+|.+++..++.. ..+++.-.+|.|||....+.+-..+.... .-++|||||. .|+.|...++.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~-----------~~rvLIVvP~-sL~~QW~~El~ 219 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGR-----------AERVLILVPE-TLQHQWLVEML 219 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC-----------CCcEEEEcCH-HHHHHHHHHHH
Confidence 4899999998776543 35888999999999987655443333221 1249999998 89999988885
Q ss_pred HhcccCCcEEEEEECCCCHHHHHH--HHhcCCcEEEeChhHHHHHHhc-ccccCCCeeEEEEecCCccCcC-CCHHHHHH
Q 013189 245 KFSYQTGVKVVVAYGGAPINQQLR--ELERGVDILVATPGRLVDLLER-ARVSLQMIRYLALDEADRMLDM-GFEPQIRK 320 (448)
Q Consensus 245 ~~~~~~~~~~~~~~gg~~~~~~~~--~l~~~~~Ilv~TP~~L~~~l~~-~~~~l~~v~~lVlDEah~ll~~-gf~~~i~~ 320 (448)
+.. ++.+.++.++........ ......+++|+|.+.|...-.. ..+.-..+++|||||||++-.. +-......
T Consensus 220 ~kF---~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~ 296 (956)
T PRK04914 220 RRF---NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQ 296 (956)
T ss_pred HHh---CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHH
Confidence 432 244444332221110000 0111358999999877642111 1122346899999999998521 11111123
Q ss_pred HHHHcCCCCCCCceEEEEeccC
Q 013189 321 IVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 321 i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
.+..+. .....++++|||.
T Consensus 297 ~v~~La---~~~~~~LLLTATP 315 (956)
T PRK04914 297 VVEQLA---EVIPGVLLLTATP 315 (956)
T ss_pred HHHHHh---hccCCEEEEEcCc
Confidence 333331 1123479999994
No 103
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.61 E-value=5.8e-15 Score=155.52 Aligned_cols=182 Identities=18% Similarity=0.225 Sum_probs=137.6
Q ss_pred HHHHHHHCCCCCCCHHHHhHh--hhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcH
Q 013189 156 LNLNIRRCKYVKPTPVQRHAI--PISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR 233 (448)
Q Consensus 156 l~~~l~~~~~~~pt~~Q~~~i--~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 233 (448)
..-..+..|..++..+|.+++ |.++.++|++..+||+.|||++.-+-++..++... -.++.+.|-.
T Consensus 212 ~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~r------------r~~llilp~v 279 (1008)
T KOG0950|consen 212 SHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR------------RNVLLILPYV 279 (1008)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHh------------hceeEeccee
Confidence 334445668888999999998 57789999999999999999999998888776543 1389999999
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcc--cccCCCeeEEEEecCCccCc
Q 013189 234 ELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA--RVSLQMIRYLALDEADRMLD 311 (448)
Q Consensus 234 eLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~--~~~l~~v~~lVlDEah~ll~ 311 (448)
.-+..-...+..|....|+.+...+|..+.... .+..+|.|||-++-..++..- .-.+..+.+|||||.|.+.+
T Consensus 280 siv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d 355 (1008)
T KOG0950|consen 280 SIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGD 355 (1008)
T ss_pred ehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeec
Confidence 988888888889988889998887766554322 223689999999877665431 12467899999999999999
Q ss_pred CCCHHHHHHHHHHcCCC-CCCCceEEEEeccCChHHHHHHHHhhc
Q 013189 312 MGFEPQIRKIVQQMDMP-PPGMRQTMLFSATFPKEIQRLASDFLA 355 (448)
Q Consensus 312 ~gf~~~i~~i~~~l~~~-~~~~~q~i~~SAT~~~~v~~l~~~~l~ 355 (448)
.+....++.++..+-.. .....|+|.||||++.. .++.+++.
T Consensus 356 ~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~ 398 (1008)
T KOG0950|consen 356 KGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLD 398 (1008)
T ss_pred cccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhh
Confidence 98888888777766211 12237899999999753 33444444
No 104
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=7.7e-14 Score=148.69 Aligned_cols=128 Identities=22% Similarity=0.254 Sum_probs=101.4
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
..|+++|.-.--++..|+ ++...||+|||++..+|++...+.. -.+-|++||--||.|=++.+..
T Consensus 79 ~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G-------------~~v~vvT~neyLA~Rd~e~~~~ 143 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTG-------------KGVHVVTVNEYLSSRDATEMGE 143 (796)
T ss_pred CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcC-------------CCeEEEeccHHHHHhhHHHHHH
Confidence 468899988877776776 9999999999999999998776543 2489999999999999999999
Q ss_pred hcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHH-HHHHhccc------ccCCCeeEEEEecCCccC
Q 013189 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQMIRYLALDEADRML 310 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L-~~~l~~~~------~~l~~v~~lVlDEah~ll 310 (448)
+....++++.++.++.+...... ...|||+++|..-| .|+|..+- .-...+.+.||||+|.+|
T Consensus 144 ~~~~LGl~vg~i~~~~~~~~r~~--~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 144 LYRWLGLTVGLNLNSMSPDEKRA--AYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred HHHhcCCeEEEeCCCCCHHHHHH--HhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 99999999999988776554332 23589999999887 34443321 123567899999999875
No 105
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.58 E-value=2.9e-13 Score=149.87 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHhh----hHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEE
Q 013189 152 LGEALNLNIRRCKYVKPTPVQRHAIP----ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLAL 227 (448)
Q Consensus 152 l~~~l~~~l~~~~~~~pt~~Q~~~i~----~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~l 227 (448)
+++.+.+.+...||+ ++|.|.+.+. .+..++++++.||||+|||++|++|++.... . +.++|
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~------------~~~vv 296 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T------------EKPVV 296 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-C------------CCeEE
Confidence 445677778778886 8999998666 5557899999999999999999999987553 1 12599
Q ss_pred EEcCcHHHHHHHHH-HHHHhcccCC--cEEEEEECCC
Q 013189 228 ILAPTRELSSQIHV-EAKKFSYQTG--VKVVVAYGGA 261 (448)
Q Consensus 228 il~PtreLa~qi~~-~~~~~~~~~~--~~~~~~~gg~ 261 (448)
|.+||++|..|+.. .+..+....+ ++++++.|+.
T Consensus 297 i~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~ 333 (850)
T TIGR01407 297 ISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKS 333 (850)
T ss_pred EEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcch
Confidence 99999999999865 5665554333 6777777654
No 106
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.57 E-value=3.8e-13 Score=146.04 Aligned_cols=258 Identities=17% Similarity=0.126 Sum_probs=181.8
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHhhhHhcC------CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCce
Q 013189 152 LGEALNLNIRRCKYVKPTPVQRHAIPISIGG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPL 225 (448)
Q Consensus 152 l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~ 225 (448)
.+.+..+.+...--..-||-|..||..+... .|=++|+.-|-|||-+++=.++..++. +.+
T Consensus 579 ~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~-------------GKQ 645 (1139)
T COG1197 579 PDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD-------------GKQ 645 (1139)
T ss_pred CChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC-------------CCe
Confidence 3444444444322225788999999988643 589999999999999988887766643 356
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh---c-CCcEEEeChhHHHHHHhcccccCCCeeEE
Q 013189 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIRYL 301 (448)
Q Consensus 226 ~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~~l 301 (448)
|.||+||.-||+|-++.++.-...+.+++..+.-=.+.+++...+. . .+||||+|-- |-...+.++++.+|
T Consensus 646 VAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr-----LL~kdv~FkdLGLl 720 (1139)
T COG1197 646 VAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR-----LLSKDVKFKDLGLL 720 (1139)
T ss_pred EEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH-----hhCCCcEEecCCeE
Confidence 9999999999999999999888888999988876666666654443 3 3899999943 23456679999999
Q ss_pred EEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecc
Q 013189 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE 381 (448)
Q Consensus 302 VlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~ 381 (448)
||||=|++.- .=++-++.+ +.+.-++-+|||.=+....|+..-+++.-.|.....+. ...+.| +.+
T Consensus 721 IIDEEqRFGV-----k~KEkLK~L----r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R---~pV~T~--V~~ 786 (1139)
T COG1197 721 IIDEEQRFGV-----KHKEKLKEL----RANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR---LPVKTF--VSE 786 (1139)
T ss_pred EEechhhcCc-----cHHHHHHHH----hccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC---cceEEE--Eec
Confidence 9999998633 223334444 44556999999987666777777677766554432211 112222 222
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC--CCCeEEecCCCCHHHHHHHh
Q 013189 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 382 ~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~--g~~~~~iHg~~~q~eR~~~l 447 (448)
.+..-.--.++++.. .++++-..+|.++..+.++..|+.. ...+...||.|+..|=++++
T Consensus 787 ~d~~~ireAI~REl~------RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM 848 (1139)
T COG1197 787 YDDLLIREAILRELL------RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVM 848 (1139)
T ss_pred CChHHHHHHHHHHHh------cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHH
Confidence 222111112223322 2778999999999999999999987 56689999999999988876
No 107
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.55 E-value=4.4e-13 Score=144.27 Aligned_cols=241 Identities=14% Similarity=0.156 Sum_probs=152.9
Q ss_pred hHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-cccCCc
Q 013189 174 HAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF-SYQTGV 252 (448)
Q Consensus 174 ~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~-~~~~~~ 252 (448)
+.+..+.+.+-++++++||||||+..-..+++ .+. .....+.|+.|.|--|..+++.+..- ....+-
T Consensus 57 ~i~~ai~~~~vvii~getGsGKTTqlP~~lle----~g~--------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 57 EILKAIEQNQVVIIVGETGSGKTTQLPQFLLE----EGL--------GIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred HHHHHHHhCCEEEEeCCCCCChHHHHHHHHHh----hhc--------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 33445667788999999999999954333333 221 22346889999998888888777653 333343
Q ss_pred EEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccC-cCCCH-HHHHHHHHHcCCCCC
Q 013189 253 KVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRML-DMGFE-PQIRKIVQQMDMPPP 330 (448)
Q Consensus 253 ~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll-~~gf~-~~i~~i~~~l~~~~~ 330 (448)
.|...+-..+ .......|-|.|.|.|+..+..... |+.+++|||||||.-. +-.|. -.+..++..+ +
T Consensus 125 ~VGY~iRfe~------~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~r----r 193 (845)
T COG1643 125 TVGYSIRFES------KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARR----R 193 (845)
T ss_pred eeeEEEEeec------cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhc----C
Confidence 3333222111 1122367999999999999987764 9999999999999642 21111 1233333343 5
Q ss_pred CCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEec-ccc-hHHHHHHHHHHHHhcCCCCCCccEE
Q 013189 331 GMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH-ESD-KRSHLMDLLHAQVANGVHGKQALTL 408 (448)
Q Consensus 331 ~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~-~~~-k~~~L~~ll~~~~~~~~~~~~~~~I 408 (448)
.+.++|+||||+..+ .+. .|+.+.-.+.+.- ..-.+..+|.... ... -...+...+...... ..+.+|
T Consensus 194 ~DLKiIimSATld~~--rfs-~~f~~apvi~i~G---R~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~----~~GdIL 263 (845)
T COG1643 194 DDLKLIIMSATLDAE--RFS-AYFGNAPVIEIEG---RTYPVEIRYLPEAEADYILLDAIVAAVDIHLRE----GSGSIL 263 (845)
T ss_pred CCceEEEEecccCHH--HHH-HHcCCCCEEEecC---CccceEEEecCCCCcchhHHHHHHHHHHHhccC----CCCCEE
Confidence 568899999999865 333 4455432232211 1222333332222 222 223344444433222 267799
Q ss_pred EEeCchHHHHHHHHHHHH----CCCCeEEecCCCCHHHHHHHh
Q 013189 409 VFVETKKGADALEHWLYM----NGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 409 IF~~t~~~a~~l~~~L~~----~g~~~~~iHg~~~q~eR~~~l 447 (448)
||.+-.++.+.+++.|.. ..+.+..+||.++.++-.+++
T Consensus 264 vFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF 306 (845)
T COG1643 264 VFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVF 306 (845)
T ss_pred EECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhc
Confidence 999999999999999998 357799999999999988875
No 108
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.54 E-value=3.6e-14 Score=127.89 Aligned_cols=152 Identities=24% Similarity=0.208 Sum_probs=100.2
Q ss_pred CCCHHHHhHhhhHhc-------CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHH
Q 013189 167 KPTPVQRHAIPISIG-------GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI 239 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~-------g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi 239 (448)
+++++|.+++..+.. .+++++.++||||||.+++..+.. +.. ++||++|+..|+.|.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~-l~~---------------~~l~~~p~~~l~~Q~ 66 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILE-LAR---------------KVLIVAPNISLLEQW 66 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHH-HHC---------------EEEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhc-ccc---------------ceeEecCHHHHHHHH
Confidence 578999999988773 588999999999999998754443 321 499999999999999
Q ss_pred HHHHHHhcccCCcEEE-----------EEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcc-----------cccCCC
Q 013189 240 HVEAKKFSYQTGVKVV-----------VAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-----------RVSLQM 297 (448)
Q Consensus 240 ~~~~~~~~~~~~~~~~-----------~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~-----------~~~l~~ 297 (448)
.+.+..+......... ...................+|++.|...|....... ......
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
T PF04851_consen 67 YDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNK 146 (184)
T ss_dssp HHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGS
T ss_pred HHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhcccc
Confidence 9999766432111100 001111111222222345789999999998876532 123456
Q ss_pred eeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCC
Q 013189 298 IRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 298 v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~ 343 (448)
..+||+||||++.... .+..++. . ....+|.||||+.
T Consensus 147 ~~~vI~DEaH~~~~~~---~~~~i~~-~-----~~~~~l~lTATp~ 183 (184)
T PF04851_consen 147 FDLVIIDEAHHYPSDS---SYREIIE-F-----KAAFILGLTATPF 183 (184)
T ss_dssp ESEEEEETGGCTHHHH---HHHHHHH-S-----SCCEEEEEESS-S
T ss_pred CCEEEEehhhhcCCHH---HHHHHHc-C-----CCCeEEEEEeCcc
Confidence 7899999999876521 1555555 2 2345899999975
No 109
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.54 E-value=5.1e-13 Score=143.38 Aligned_cols=251 Identities=16% Similarity=0.136 Sum_probs=161.0
Q ss_pred CHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-c
Q 013189 169 TPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF-S 247 (448)
Q Consensus 169 t~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~-~ 247 (448)
...+...+..+.+.+.++|++.||||||+..-..||+.....+ ..+.+||..|.|-.|..+++++.+- +
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~----------~~~~IicTQPRRIsAIsvAeRVa~ER~ 244 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG----------AACNIICTQPRRISAISVAERVAKERG 244 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC----------CCCeEEecCCchHHHHHHHHHHHHHhc
Confidence 4566777788888999999999999999987777777666543 3466999999999999999988653 2
Q ss_pred ccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccC-cCCCHHHHHHHHHHcC
Q 013189 248 YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRML-DMGFEPQIRKIVQQMD 326 (448)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll-~~gf~~~i~~i~~~l~ 326 (448)
...+-.|..-..... .......+++||.|.|++.+..+. .+..+.++|+||+|.-. +..|.-.+.+.+...
T Consensus 245 ~~~g~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~~~-~l~~vthiivDEVHER~i~~DflLi~lk~lL~~- 316 (924)
T KOG0920|consen 245 ESLGEEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQSDP-TLSGVTHIIVDEVHERSINTDFLLILLKDLLPR- 316 (924)
T ss_pred cccCCeeeEEEeeec------ccCCceeEEEecHHHHHHHhccCc-ccccCceeeeeeEEEccCCcccHHHHHHHHhhh-
Confidence 333322222222111 111236799999999999998744 58999999999999763 333443333333333
Q ss_pred CCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcc----------------cceeEE------------EEE
Q 013189 327 MPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSST----------------DLIVQR------------VEF 378 (448)
Q Consensus 327 ~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~----------------~~i~q~------------~~~ 378 (448)
.++.++|+||||+..+ +.++|+.....+.+.-...+. ....++ +..
T Consensus 317 ---~p~LkvILMSAT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (924)
T KOG0920|consen 317 ---NPDLKVILMSATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKL 390 (924)
T ss_pred ---CCCceEEEeeeecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchh
Confidence 4678999999999843 334554432222221100000 000000 111
Q ss_pred ecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC-------CCCeEEecCCCCHHHHHHH
Q 013189 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN-------GFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 379 ~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~-------g~~~~~iHg~~~q~eR~~~ 446 (448)
...+.+...+.+++...... ...+.+|||-+...+...+.+.|..+ .+-+..+|+.|+..|...+
T Consensus 391 ~~~~id~~Li~~li~~I~~~---~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V 462 (924)
T KOG0920|consen 391 WEPEIDYDLIEDLIEYIDER---EFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV 462 (924)
T ss_pred ccccccHHHHHHHHHhcccC---CCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh
Confidence 12222333444444443322 23678999999999999999999652 3568889999999877655
No 110
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.49 E-value=2.4e-12 Score=138.63 Aligned_cols=150 Identities=20% Similarity=0.188 Sum_probs=96.5
Q ss_pred CCHHHHhHhhhHh----c------CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHH
Q 013189 168 PTPVQRHAIPISI----G------GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSS 237 (448)
Q Consensus 168 pt~~Q~~~i~~i~----~------g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~ 237 (448)
|++.|..|+..+. . .+..++..+||||||+..+..+. .++.. ...+++|||+|+.+|..
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~-~l~~~----------~~~~~vl~lvdR~~L~~ 307 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAAR-KALEL----------LKNPKVFFVVDRRELDY 307 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHH-HHHhh----------cCCCeEEEEECcHHHHH
Confidence 6778999987653 2 24689999999999998655443 33321 23467999999999999
Q ss_pred HHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhc-CCcEEEeChhHHHHHHhcc--cccCCCe-eEEEEecCCccCcCC
Q 013189 238 QIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERA--RVSLQMI-RYLALDEADRMLDMG 313 (448)
Q Consensus 238 qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~TP~~L~~~l~~~--~~~l~~v-~~lVlDEah~ll~~g 313 (448)
|+.+.+.++.... .....+...-...+.. ...|+|+|.+.|...+... .+....- -+||+||||+....
T Consensus 308 Q~~~~f~~~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~- 380 (667)
T TIGR00348 308 QLMKEFQSLQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG- 380 (667)
T ss_pred HHHHHHHhhCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch-
Confidence 9999999975321 0111222222333333 3689999999998654321 1111111 27999999986542
Q ss_pred CHHHHHHHH-HHcCCCCCCCceEEEEeccCC
Q 013189 314 FEPQIRKIV-QQMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 314 f~~~i~~i~-~~l~~~~~~~~q~i~~SAT~~ 343 (448)
.+..++ ..+ + +...++||||.-
T Consensus 381 ---~~~~~l~~~~----p-~a~~lGfTaTP~ 403 (667)
T TIGR00348 381 ---ELAKNLKKAL----K-NASFFGFTGTPI 403 (667)
T ss_pred ---HHHHHHHhhC----C-CCcEEEEeCCCc
Confidence 233333 344 3 346999999974
No 111
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.48 E-value=1.1e-12 Score=137.16 Aligned_cols=247 Identities=23% Similarity=0.250 Sum_probs=151.9
Q ss_pred CCCHHHHhHhhhHh----cCCC-eeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013189 167 KPTPVQRHAIPISI----GGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~----~g~d-~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~ 241 (448)
.|+.+|..||..+. .|++ +++++.||+|||..+ +.++.+|++.+-.+ ++|+|+-++.|+.|.+.
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~~K----------RVLFLaDR~~Lv~QA~~ 233 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGWVK----------RVLFLADRNALVDQAYG 233 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcchhh----------eeeEEechHHHHHHHHH
Confidence 48899999997554 4544 999999999999884 56777887765332 49999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcc-----cccCCCeeEEEEecCCccCcCCCHH
Q 013189 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-----RVSLQMIRYLALDEADRMLDMGFEP 316 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~-----~~~l~~v~~lVlDEah~ll~~gf~~ 316 (448)
.+..+..... .+....+... ...+.|.|+|..++...+... ++....++++|+||||+-. ..
T Consensus 234 af~~~~P~~~--~~n~i~~~~~-------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~ 300 (875)
T COG4096 234 AFEDFLPFGT--KMNKIEDKKG-------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YS 300 (875)
T ss_pred HHHHhCCCcc--ceeeeecccC-------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----Hh
Confidence 9988864321 1111211111 114789999999999888653 3556779999999999843 34
Q ss_pred HHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHH-------------------hhcCcEEEEe----ccccCcccce-
Q 013189 317 QIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASD-------------------FLANYIFLAV----GRVGSSTDLI- 372 (448)
Q Consensus 317 ~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~-------------------~l~~~~~i~v----~~~~~~~~~i- 372 (448)
....|+.+++. - +++++||+...+..---. ||..|-.+.+ ...+...+..
T Consensus 301 ~~~~I~dYFdA----~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~s 374 (875)
T COG4096 301 EWSSILDYFDA----A--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGS 374 (875)
T ss_pred hhHHHHHHHHH----H--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccc
Confidence 44577777622 1 233488876544322222 2222211111 1111111111
Q ss_pred -------------eEEEEEecc------cchHHHHHHHHHHHHhcCCCCC-CccEEEEeCchHHHHHHHHHHHHC-----
Q 013189 373 -------------VQRVEFVHE------SDKRSHLMDLLHAQVANGVHGK-QALTLVFVETKKGADALEHWLYMN----- 427 (448)
Q Consensus 373 -------------~q~~~~~~~------~~k~~~L~~ll~~~~~~~~~~~-~~~~IIF~~t~~~a~~l~~~L~~~----- 427 (448)
.+.+...+. ......+...+.........++ -+||||||.+..+|+.+...|...
T Consensus 375 erek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~ 454 (875)
T COG4096 375 EREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYN 454 (875)
T ss_pred hhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcccc
Confidence 011111110 1123445555555444332232 578999999999999999999764
Q ss_pred CCCeEEecCCCCHHHH
Q 013189 428 GFPATTIHGDRTQQRT 443 (448)
Q Consensus 428 g~~~~~iHg~~~q~eR 443 (448)
+--|..|.|+-.+..+
T Consensus 455 ~~~a~~IT~d~~~~q~ 470 (875)
T COG4096 455 GRYAMKITGDAEQAQA 470 (875)
T ss_pred CceEEEEeccchhhHH
Confidence 3347777777665543
No 112
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.48 E-value=4.7e-12 Score=139.61 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=102.6
Q ss_pred CCCHHHHhHhhhHh----cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013189 167 KPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~ 242 (448)
++.++|...+..+. ++.+.|++-..|.|||+..+ .++..+.... .....+|||||. .|..+..++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~~---------~~~gp~LIVvP~-SlL~nW~~E 237 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEYR---------GITGPHMVVAPK-STLGNWMNE 237 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHhc---------CCCCCEEEEeCh-HHHHHHHHH
Confidence 57899999998764 57789999999999999753 3444443221 112238999997 556788999
Q ss_pred HHHhcccCCcEEEEEECCCCHHHHHHH--H-hcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHH
Q 013189 243 AKKFSYQTGVKVVVAYGGAPINQQLRE--L-ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIR 319 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~--l-~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~ 319 (448)
+++++. .++++.++|.......... + ....+|+|+|.+.+..... .+.--...+|||||||++-.. ...+.
T Consensus 238 i~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Skls 311 (1033)
T PLN03142 238 IRRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLS 311 (1033)
T ss_pred HHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHH
Confidence 999873 4677777765433222211 1 2347999999998865432 222235689999999998653 24455
Q ss_pred HHHHHcCCCCCCCceEEEEeccC
Q 013189 320 KIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 320 ~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
.++..+. .. ..+++|+|.
T Consensus 312 kalr~L~----a~-~RLLLTGTP 329 (1033)
T PLN03142 312 KTMRLFS----TN-YRLLITGTP 329 (1033)
T ss_pred HHHHHhh----cC-cEEEEecCC
Confidence 6666662 22 258899995
No 113
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.43 E-value=2.7e-11 Score=124.22 Aligned_cols=240 Identities=17% Similarity=0.161 Sum_probs=149.2
Q ss_pred HhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH-hcccCC
Q 013189 173 RHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK-FSYQTG 251 (448)
Q Consensus 173 ~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~-~~~~~~ 251 (448)
.+.+..+.+++-+++.++||||||+ ++| +.+.+.+. ....++-|..|.|--|..++.+... .....|
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKST--Qip--QyL~eaG~--------~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG 124 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKST--QIP--QYLAEAGF--------ASSGKIACTQPRRVAAVSLAKRVAEEMGCQLG 124 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCccc--cHh--HHHHhccc--------ccCCcEEeecCchHHHHHHHHHHHHHhCCCcC
Confidence 3445566678889999999999999 555 44544432 2233488999999998888776653 333334
Q ss_pred cEEE--EEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCC
Q 013189 252 VKVV--VAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPP 329 (448)
Q Consensus 252 ~~~~--~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~ 329 (448)
-.|. +.+.+.... ...|.+.|-|.|+.-+.... .|+..+++||||||.-.- .-+.+.-+++.+-..
T Consensus 125 ~~VGY~IRFed~ts~--------~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl--~TDiLlGlLKki~~~- 192 (674)
T KOG0922|consen 125 EEVGYTIRFEDSTSK--------DTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSL--HTDILLGLLKKILKK- 192 (674)
T ss_pred ceeeeEEEecccCCC--------ceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhh--HHHHHHHHHHHHHhc-
Confidence 3332 233332211 25799999999999887666 489999999999996321 113333344443222
Q ss_pred CCCceEEEEeccCChHHHHHHHHhhcC-cEEEEeccccCcccceeEEEEEecccchHH-HHHHHHHHHHhcCCCCCCccE
Q 013189 330 PGMRQTMLFSATFPKEIQRLASDFLAN-YIFLAVGRVGSSTDLIVQRVEFVHESDKRS-HLMDLLHAQVANGVHGKQALT 407 (448)
Q Consensus 330 ~~~~q~i~~SAT~~~~v~~l~~~~l~~-~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~-~L~~ll~~~~~~~~~~~~~~~ 407 (448)
+.+.++|++|||+..+ ....|+.+ ++....++ .-.+...|..-...+=.. .+.-.++-+.. .+.+-+
T Consensus 193 R~~LklIimSATlda~---kfS~yF~~a~i~~i~GR----~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~----E~~GDI 261 (674)
T KOG0922|consen 193 RPDLKLIIMSATLDAE---KFSEYFNNAPILTIPGR----TFPVEILYLKEPTADYVDAALITVIQIHLT----EPPGDI 261 (674)
T ss_pred CCCceEEEEeeeecHH---HHHHHhcCCceEeecCC----CCceeEEeccCCchhhHHHHHHHHHHHHcc----CCCCCE
Confidence 3457899999999854 34466665 43332221 222333333322222222 22222222221 125569
Q ss_pred EEEeCchHHHHHHHHHHHHC------CC--CeEEecCCCCHHHHHHHh
Q 013189 408 LVFVETKKGADALEHWLYMN------GF--PATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 408 IIF~~t~~~a~~l~~~L~~~------g~--~~~~iHg~~~q~eR~~~l 447 (448)
|||-...++.+.+++.|.+. +. -+..+||.|+.++..++.
T Consensus 262 LvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF 309 (674)
T KOG0922|consen 262 LVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVF 309 (674)
T ss_pred EEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccc
Confidence 99999999999999999764 11 146799999999887764
No 114
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.43 E-value=1.4e-11 Score=129.16 Aligned_cols=128 Identities=17% Similarity=0.121 Sum_probs=101.6
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
..|.++|--..-.++.| -++...||.|||++..+|++...+.. ..+.|++|+--||.|=++.+..
T Consensus 77 ~r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~G-------------~~VhvvT~NdyLA~RDae~m~~ 141 (764)
T PRK12326 77 LRPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQG-------------RRVHVITVNDYLARRDAEWMGP 141 (764)
T ss_pred CCcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHcC-------------CCeEEEcCCHHHHHHHHHHHHH
Confidence 46889999998888877 47899999999999999998766543 2489999999999999999999
Q ss_pred hcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHH-HHHHhcc------cccCCCeeEEEEecCCccC
Q 013189 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML 310 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L-~~~l~~~------~~~l~~v~~lVlDEah~ll 310 (448)
+....++++.++.++.+..+.... -.|||+++|..-| .|+|+.+ ......+.+.||||+|.+|
T Consensus 142 ly~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 142 LYEALGLTVGWITEESTPEERRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred HHHhcCCEEEEECCCCCHHHHHHH--HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 999999999999888775543333 2589999999876 3444322 1224667899999999875
No 115
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.43 E-value=9.8e-12 Score=124.14 Aligned_cols=104 Identities=23% Similarity=0.204 Sum_probs=72.0
Q ss_pred CceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEe
Q 013189 332 MRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFV 411 (448)
Q Consensus 332 ~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~ 411 (448)
..|+|.+|||..+.-.+... .+.+...+. ++..+.-.++.-+.....+.|+.-++..... +.++||-+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~---~~vveQiIR----PTGLlDP~ievRp~~~QvdDL~~EI~~r~~~-----~eRvLVTt 453 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG---GNVVEQIIR----PTGLLDPEIEVRPTKGQVDDLLSEIRKRVAK-----NERVLVTT 453 (663)
T ss_pred cCCEEEEECCCChHHHHhcc---CceeEEeec----CCCCCCCceeeecCCCcHHHHHHHHHHHHhc-----CCeEEEEe
Confidence 37999999997654222211 112222222 2222222333444445566677666665432 67899999
Q ss_pred CchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 412 ETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 412 ~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
-||++|+.|.++|...|+++..+|++...-||.++|
T Consensus 454 LTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIi 489 (663)
T COG0556 454 LTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEII 489 (663)
T ss_pred ehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHH
Confidence 999999999999999999999999999999999887
No 116
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.43 E-value=2.3e-11 Score=122.34 Aligned_cols=226 Identities=20% Similarity=0.223 Sum_probs=155.7
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccC-Cc----EEEEEEC--------------CCCHHHHHHHHhc----
Q 013189 216 PRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQT-GV----KVVVAYG--------------GAPINQQLRELER---- 272 (448)
Q Consensus 216 ~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~-~~----~~~~~~g--------------g~~~~~~~~~l~~---- 272 (448)
.+++....|++|||+|+|..|.++.+.+.++.... .+ +...-+| ......+.+.+-.
T Consensus 30 ~RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~D 109 (442)
T PF06862_consen 30 FRDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNND 109 (442)
T ss_pred hhccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCcc
Confidence 35677889999999999999999999988876431 10 0001111 0111122222221
Q ss_pred ---------------------CCcEEEeChhHHHHHHhc------ccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 273 ---------------------GVDILVATPGRLVDLLER------ARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 273 ---------------------~~~Ilv~TP~~L~~~l~~------~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
..|||||+|-.|...+.. ..-.|++|.++|||.||.|+.++| +++..++++|
T Consensus 110 D~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW-~Hv~~v~~~l 188 (442)
T PF06862_consen 110 DCFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNW-EHVLHVFEHL 188 (442)
T ss_pred ceEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhH-HHHHHHHHHh
Confidence 249999999999999874 123489999999999999988776 7899999999
Q ss_pred CCCCCCC--------------------ceEEEEeccCChHHHHHHHHhhcCcEE---EEeccc-----cCcccceeEEEE
Q 013189 326 DMPPPGM--------------------RQTMLFSATFPKEIQRLASDFLANYIF---LAVGRV-----GSSTDLIVQRVE 377 (448)
Q Consensus 326 ~~~~~~~--------------------~q~i~~SAT~~~~v~~l~~~~l~~~~~---i~v~~~-----~~~~~~i~q~~~ 377 (448)
+.+|.+. ||+|+||+...+++..+...++.|+.- +..... ......+.|.+.
T Consensus 189 N~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~ 268 (442)
T PF06862_consen 189 NLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQ 268 (442)
T ss_pred ccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEE
Confidence 8765322 899999999999999999998877532 221111 223345677777
Q ss_pred Eeccc-------chHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHH
Q 013189 378 FVHES-------DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTS 444 (448)
Q Consensus 378 ~~~~~-------~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~ 444 (448)
.++-. .+.....+-+-..... .+....|||||+|--+=-.|..+|...++....||--.++.+-.
T Consensus 269 r~~~~s~~~~~d~Rf~yF~~~iLP~l~~--~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~is 340 (442)
T PF06862_consen 269 RFDCSSPADDPDARFKYFTKKILPQLKR--DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDIS 340 (442)
T ss_pred EecCCCcchhhhHHHHHHHHHHHHHhhh--ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHH
Confidence 65422 2333333322222110 12367799999999999999999999999999999777766533
No 117
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.32 E-value=8.6e-12 Score=134.31 Aligned_cols=232 Identities=18% Similarity=0.261 Sum_probs=151.4
Q ss_pred CCCCCHHHHhHhhhHhc-CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013189 165 YVKPTPVQRHAIPISIG-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 165 ~~~pt~~Q~~~i~~i~~-g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~ 243 (448)
|....|+|.++++.+.+ +.++++++|+|||||+|.-+.++. .....+++++.|.-+.+..++..+
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~--------------~~~~~~~vyi~p~~~i~~~~~~~w 1206 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR--------------PDTIGRAVYIAPLEEIADEQYRDW 1206 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC--------------CccceEEEEecchHHHHHHHHHHH
Confidence 44568999999998875 556999999999999999988875 133467999999999998887777
Q ss_pred H-HhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCC---C--HHH
Q 013189 244 K-KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG---F--EPQ 317 (448)
Q Consensus 244 ~-~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~g---f--~~~ 317 (448)
. +|....|..++.+.|..+... +.+. .-+|+|+||+++..+ + ..+.+++.|.||+|.+...+ + --.
T Consensus 1207 ~~~f~~~~G~~~~~l~ge~s~~l--kl~~-~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S 1278 (1674)
T KOG0951|consen 1207 EKKFSKLLGLRIVKLTGETSLDL--KLLQ-KGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS 1278 (1674)
T ss_pred HHhhccccCceEEecCCccccch--HHhh-hcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee
Confidence 4 666667888888877766433 2233 359999999998665 2 67889999999999887432 1 112
Q ss_pred HHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHh
Q 013189 318 IRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVA 397 (448)
Q Consensus 318 i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~ 397 (448)
++.|-.++ -++.+++.+|..+... .+++.-.-...+.+.......+.+.-.|.+...........+.+.......
T Consensus 1279 ~r~ia~q~----~k~ir~v~ls~~lana-~d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~ 1353 (1674)
T KOG0951|consen 1279 MRYIASQL----EKKIRVVALSSSLANA-RDLIGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIV 1353 (1674)
T ss_pred HHHHHHHH----HhheeEEEeehhhccc-hhhccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHH
Confidence 66777777 5667899998876532 222111111111122222222233223333333333333333333222211
Q ss_pred cCCCCCCccEEEEeCchHHHHHHHHHH
Q 013189 398 NGVHGKQALTLVFVETKKGADALEHWL 424 (448)
Q Consensus 398 ~~~~~~~~~~IIF~~t~~~a~~l~~~L 424 (448)
.. .+..++++||++++++|..++.-|
T Consensus 1354 ~~-a~~~k~~~vf~p~rk~~~~~a~~~ 1379 (1674)
T KOG0951|consen 1354 RH-AGNRKPAIVFLPTRKHARLVAVDL 1379 (1674)
T ss_pred HH-hcCCCCeEEEeccchhhhhhhhcc
Confidence 11 234788999999999999888765
No 118
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=1.6e-11 Score=122.26 Aligned_cols=266 Identities=21% Similarity=0.284 Sum_probs=173.1
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccC-CCCc--chhhhhhHHHHHhhhhcc------------------cCCCCCCCCCc
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQT-GSGK--TAAFCFPIISGIMREQYV------------------QRPRGSRTVYP 224 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~T-GsGK--T~~~~lpil~~l~~~~~~------------------~~~~~~~~~~~ 224 (448)
..+|+.|.+.+.++.+.+|++..-.| +.|+ +-.|++-+|+++++.... ...+++....|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 34799999999999999998764333 3444 567999999999874321 01135667789
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCc---------EEEEEECCC--------CHHHHHHHHh----------------
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTGV---------KVVVAYGGA--------PINQQLRELE---------------- 271 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~~---------~~~~~~gg~--------~~~~~~~~l~---------------- 271 (448)
++|||||+|+.|..+.+.+..+...... +..--|+|. +..+..+.+-
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 9999999999999999999887322111 111122220 0111111111
Q ss_pred ---------cCCcEEEeChhHHHHHHhcc---c---ccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCC-----
Q 013189 272 ---------RGVDILVATPGRLVDLLERA---R---VSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPG----- 331 (448)
Q Consensus 272 ---------~~~~Ilv~TP~~L~~~l~~~---~---~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~----- 331 (448)
...|||||+|-.|..++.+. + -.|++|.++|||.||.|+.++| +.+..|+.+|+..|.+
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCCC
Confidence 13599999999999988632 1 2379999999999999998876 7889999999776543
Q ss_pred ---------------CceEEEEeccCChHHHHHHHHhhcCcEEEEec----------cccCcccceeEEEEEec----cc
Q 013189 332 ---------------MRQTMLFSATFPKEIQRLASDFLANYIFLAVG----------RVGSSTDLIVQRVEFVH----ES 382 (448)
Q Consensus 332 ---------------~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~----------~~~~~~~~i~q~~~~~~----~~ 382 (448)
-+|+|+||+-..+.+..+...++.|..-.... ....+..-+.|.+..-. ..
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 17999999999999999999888765422111 11111112222222111 12
Q ss_pred chHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEec
Q 013189 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIH 435 (448)
Q Consensus 383 ~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iH 435 (448)
.++....+-+--+..... ..-+|||.++--.--.|..+|....+.-..||
T Consensus 534 ~RFkyFv~~ImPq~~k~t---~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~ 583 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRT---ESGILIYIPSYFDFVRVRNYMKKEEISFVMIN 583 (698)
T ss_pred HHHHHHHHhhchhhcccc---cCceEEEecchhhHHHHHHHhhhhhcchHHHh
Confidence 233333333222221111 33479999999888889999988876665555
No 119
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.30 E-value=1.2e-11 Score=122.28 Aligned_cols=242 Identities=16% Similarity=0.122 Sum_probs=156.4
Q ss_pred CCCCHHHHhHhhhHh-cC--CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISI-GG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~-~g--~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~ 242 (448)
..++|+|..++..+. +| +.-+|+.|.|+|||++-...+. .+ .-.+||||.+--.+.|....
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-ti---------------kK~clvLcts~VSVeQWkqQ 364 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TI---------------KKSCLVLCTSAVSVEQWKQQ 364 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-ee---------------cccEEEEecCccCHHHHHHH
Confidence 468999999999887 44 6789999999999998655433 12 22499999999999999999
Q ss_pred HHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcc--------cccCCCeeEEEEecCCccCcCCC
Q 013189 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA--------RVSLQMIRYLALDEADRMLDMGF 314 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~--------~~~l~~v~~lVlDEah~ll~~gf 314 (448)
++.++..-.-.++.++.+.. .....++.|+|+|...+..--.+. -+.-....++||||+|.+-..-|
T Consensus 365 fk~wsti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MF 439 (776)
T KOG1123|consen 365 FKQWSTIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMF 439 (776)
T ss_pred HHhhcccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHH
Confidence 99998665566666665543 123346899999987763211100 01235678899999998877556
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHH-HhhcCcE--------------EEEeccc-------------c
Q 013189 315 EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS-DFLANYI--------------FLAVGRV-------------G 366 (448)
Q Consensus 315 ~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~-~~l~~~~--------------~i~v~~~-------------~ 366 (448)
+..+.-+-.++ -+.++||+-.+-..+.. +||.-|. +-.|... .
T Consensus 440 RRVlsiv~aHc---------KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eY 510 (776)
T KOG1123|consen 440 RRVLSIVQAHC---------KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREY 510 (776)
T ss_pred HHHHHHHHHHh---------hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHH
Confidence 66555555555 58899997443222111 1221111 1111111 1
Q ss_pred CcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHH
Q 013189 367 SSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 367 ~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~ 446 (448)
.....-...+.++-...|+..---|++.+... +.++|||...+-.....|-.|.+ -.|.|..+|.||.+|
T Consensus 511 L~~~t~kr~lLyvMNP~KFraCqfLI~~HE~R-----gDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~I 580 (776)
T KOG1123|consen 511 LRENTRKRMLLYVMNPNKFRACQFLIKFHERR-----GDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKI 580 (776)
T ss_pred HhhhhhhhheeeecCcchhHHHHHHHHHHHhc-----CCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHH
Confidence 11111223344555556666666666655432 77899999987666666555532 379999999999998
Q ss_pred h
Q 013189 447 I 447 (448)
Q Consensus 447 l 447 (448)
|
T Consensus 581 L 581 (776)
T KOG1123|consen 581 L 581 (776)
T ss_pred H
Confidence 7
No 120
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.29 E-value=2.9e-11 Score=127.43 Aligned_cols=72 Identities=24% Similarity=0.152 Sum_probs=56.3
Q ss_pred hHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc-cc--CCcEE
Q 013189 178 ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS-YQ--TGVKV 254 (448)
Q Consensus 178 ~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~-~~--~~~~~ 254 (448)
.+..++.+++.|+||+|||++|++|++..+... .+.++||++||++|+.|+.+.+..+. .. ..+++
T Consensus 12 al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~-----------~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~ 80 (636)
T TIGR03117 12 SLRQKRIGMLEASTGVGKTLAMIMAALTMLKER-----------PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQA 80 (636)
T ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc-----------cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeE
Confidence 445678899999999999999999999876532 12469999999999999999988887 32 34555
Q ss_pred EEEECC
Q 013189 255 VVAYGG 260 (448)
Q Consensus 255 ~~~~gg 260 (448)
.++.|.
T Consensus 81 ~~lkGr 86 (636)
T TIGR03117 81 GFFPGS 86 (636)
T ss_pred EEEECC
Confidence 555543
No 121
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.28 E-value=1.2e-10 Score=124.98 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=99.0
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
..|.++|--.--.+. +--|+.+.||.|||+++.+|++-..+.. ..+-|++|+--||.|=++.+..
T Consensus 81 m~~ydVQliGg~~Lh--~G~iaEM~TGEGKTLvA~l~a~l~al~G-------------~~VhvvT~ndyLA~RD~e~m~~ 145 (913)
T PRK13103 81 MRHFDVQLIGGMTLH--EGKIAEMRTGEGKTLVGTLAVYLNALSG-------------KGVHVVTVNDYLARRDANWMRP 145 (913)
T ss_pred CCcchhHHHhhhHhc--cCccccccCCCCChHHHHHHHHHHHHcC-------------CCEEEEeCCHHHHHHHHHHHHH
Confidence 457777776544443 4468899999999999999998666543 3489999999999999999999
Q ss_pred hcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHH-HHHHhccc------ccCCCeeEEEEecCCccC
Q 013189 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQMIRYLALDEADRML 310 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L-~~~l~~~~------~~l~~v~~lVlDEah~ll 310 (448)
+....++++.++.++.+..+..... .+||+++|..-| .|+|..+- .-...+.|+||||+|.+|
T Consensus 146 l~~~lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 146 LYEFLGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred HhcccCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 9999999999998877755444333 389999999887 44444321 124778999999999875
No 122
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.26 E-value=3.8e-11 Score=131.68 Aligned_cols=131 Identities=19% Similarity=0.274 Sum_probs=96.3
Q ss_pred CCCCCCHHHHhHhhh----HhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHH
Q 013189 164 KYVKPTPVQRHAIPI----SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI 239 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~----i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi 239 (448)
+| ++++.|.+.+.. +..++++++.|+||+|||++|++|++... .++++||++||++|+.|+
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~--------------~~~~vvI~t~T~~Lq~Ql 307 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS--------------DQRQIIVSVPTKILQDQI 307 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc--------------CCCcEEEEeCcHHHHHHH
Confidence 44 689999985543 33678899999999999999999988643 124699999999999999
Q ss_pred -HHHHHHhcccCCcEEEEEECCCCHHHH-----------------------------------------------HHHHh
Q 013189 240 -HVEAKKFSYQTGVKVVVAYGGAPINQQ-----------------------------------------------LRELE 271 (448)
Q Consensus 240 -~~~~~~~~~~~~~~~~~~~gg~~~~~~-----------------------------------------------~~~l~ 271 (448)
.+.+..+....++++.++.|+.+.--. +..+.
T Consensus 308 ~~~~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~ 387 (820)
T PRK07246 308 MAEEVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLK 387 (820)
T ss_pred HHHHHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhh
Confidence 577888877778888877776432100 00000
Q ss_pred ------------------------cCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccC
Q 013189 272 ------------------------RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRML 310 (448)
Q Consensus 272 ------------------------~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll 310 (448)
...||||+.-.-|+..+.... .+...++|||||||.|.
T Consensus 388 ~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 388 HDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLM 449 (820)
T ss_pred ccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhH
Confidence 023899999888777664433 36778999999999874
No 123
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.25 E-value=3.3e-10 Score=121.22 Aligned_cols=127 Identities=20% Similarity=0.173 Sum_probs=96.2
Q ss_pred CCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
.|.++|--..-.+ .+.-++.+.||-|||+++.+|++-..+.. ..|-|++++..||.+-++.+..+
T Consensus 76 r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~G-------------~~VhVvT~NdyLA~RD~e~m~pv 140 (870)
T CHL00122 76 RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALTG-------------KGVHIVTVNDYLAKRDQEWMGQI 140 (870)
T ss_pred CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhcC-------------CceEEEeCCHHHHHHHHHHHHHH
Confidence 4778887665444 45689999999999999999986444322 23899999999999999999999
Q ss_pred cccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHH-HHHHhcc------cccCCCeeEEEEecCCccC
Q 013189 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML 310 (448)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L-~~~l~~~------~~~l~~v~~lVlDEah~ll 310 (448)
....|+.+.++.++.+..+. .-.-.|||+++|..-| .|+|+.+ ..-...+.|.||||+|.+|
T Consensus 141 y~~LGLsvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 141 YRFLGLTVGLIQEGMSSEER--KKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHcCCceeeeCCCCChHHH--HHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 99999999998888776543 3334589999999765 2444322 1124668899999999875
No 124
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.23 E-value=4.6e-11 Score=126.12 Aligned_cols=166 Identities=21% Similarity=0.239 Sum_probs=118.7
Q ss_pred CCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
.|..+|.+.+..+-.+..++|+|||.+|||.+ ..-++..++++.. ...+|+++||.+|+.|+...+...
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfi-sfY~iEKVLResD----------~~VVIyvaPtKaLVnQvsa~VyaR 579 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFI-SFYAIEKVLRESD----------SDVVIYVAPTKALVNQVSANVYAR 579 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceec-cHHHHHHHHhhcC----------CCEEEEecchHHHhhhhhHHHHHh
Confidence 47889999999999999999999999999996 3445566665532 235899999999999997777654
Q ss_pred c-ccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhc---ccccCCCeeEEEEecCCccCcCCCHHHHHHHH
Q 013189 247 S-YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER---ARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322 (448)
Q Consensus 247 ~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~---~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~ 322 (448)
. ..+-.+.+.+.|......++.. -.|+|+|+-|+-|..+|.. ..-....++|+|+||+|.+..+.-.--++.++
T Consensus 580 F~~~t~~rg~sl~g~ltqEYsinp--~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll 657 (1330)
T KOG0949|consen 580 FDTKTFLRGVSLLGDLTQEYSINP--WNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLL 657 (1330)
T ss_pred hccCccccchhhHhhhhHHhcCCc--hhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHH
Confidence 3 3333344444555444444331 2489999999999998876 33457899999999999997654223344455
Q ss_pred HHcCCCCCCCceEEEEeccC--ChHHHHHHH
Q 013189 323 QQMDMPPPGMRQTMLFSATF--PKEIQRLAS 351 (448)
Q Consensus 323 ~~l~~~~~~~~q~i~~SAT~--~~~v~~l~~ 351 (448)
..+ .|.+|++|||+ +...+.+.+
T Consensus 658 ~li------~CP~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 658 LLI------PCPFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred Hhc------CCCeeEEecccCCHHHHHHHHH
Confidence 544 36699999998 334444444
No 125
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.19 E-value=5.5e-10 Score=114.03 Aligned_cols=246 Identities=16% Similarity=0.119 Sum_probs=151.5
Q ss_pred CHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH-hc
Q 013189 169 TPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK-FS 247 (448)
Q Consensus 169 t~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~-~~ 247 (448)
.++-.+.+.++..++-+||.+.||||||+ ++| +.|...+... .+-++=|..|.|--|..++..+.+ +.
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTT--QiP--QyL~EaGytk-------~gk~IgcTQPRRVAAmSVAaRVA~EMg 335 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTT--QIP--QYLYEAGYTK-------GGKKIGCTQPRRVAAMSVAARVAEEMG 335 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCccc--ccc--HHHHhccccc-------CCceEeecCcchHHHHHHHHHHHHHhC
Confidence 45556677788888999999999999999 566 4455544321 122377889999999998776654 32
Q ss_pred ccCCcEEE--EEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 248 YQTGVKVV--VAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 248 ~~~~~~~~--~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
...|..|. +.+-+.. ....-|=+.|-|.|+.-+.... +|.+.+++||||||.-.- .-+.+.-++..+
T Consensus 336 vkLG~eVGYsIRFEdcT--------SekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL--~TDILfgLvKDI 404 (902)
T KOG0923|consen 336 VKLGHEVGYSIRFEDCT--------SEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTL--HTDILFGLVKDI 404 (902)
T ss_pred cccccccceEEEecccc--------CcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhh--hhhHHHHHHHHH
Confidence 22221111 1111111 1124577999999987766443 699999999999996421 112233333333
Q ss_pred CCCCCCCceEEEEeccCChHHHHHHHHhhcC-cEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCC
Q 013189 326 DMPPPGMRQTMLFSATFPKEIQRLASDFLAN-YIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQ 404 (448)
Q Consensus 326 ~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~-~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~ 404 (448)
... .++..+++.|||+..+ . ...|+.+ |+|...++.. .+..+|...++.+=..+.+.-+......+ ..
T Consensus 405 ar~-RpdLKllIsSAT~DAe--k-FS~fFDdapIF~iPGRRy----PVdi~Yt~~PEAdYldAai~tVlqIH~tq---p~ 473 (902)
T KOG0923|consen 405 ARF-RPDLKLLISSATMDAE--K-FSAFFDDAPIFRIPGRRY----PVDIFYTKAPEADYLDAAIVTVLQIHLTQ---PL 473 (902)
T ss_pred Hhh-CCcceEEeeccccCHH--H-HHHhccCCcEEeccCccc----ceeeecccCCchhHHHHHHhhheeeEecc---CC
Confidence 222 4577899999999865 2 3345544 5665544332 23334545555444443333222222222 24
Q ss_pred ccEEEEeCchHHHHHHHHHHHH----C-----CCCeEEecCCCCHHHHHHHh
Q 013189 405 ALTLVFVETKKGADALEHWLYM----N-----GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 405 ~~~IIF~~t~~~a~~l~~~L~~----~-----g~~~~~iHg~~~q~eR~~~l 447 (448)
+-+|||..-.++.+.+.+.|.. . .+-+..||+.++++....|.
T Consensus 474 GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIF 525 (902)
T KOG0923|consen 474 GDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIF 525 (902)
T ss_pred ccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhc
Confidence 5699999998888877777653 2 24477899999998776653
No 126
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=6.1e-10 Score=115.70 Aligned_cols=221 Identities=18% Similarity=0.150 Sum_probs=127.9
Q ss_pred hhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH-Hhcc-cCCcEE
Q 013189 177 PISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK-KFSY-QTGVKV 254 (448)
Q Consensus 177 ~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~-~~~~-~~~~~~ 254 (448)
..|..+--+|||++||||||+ ++| ++|+..+..... ......+=|..|.|--|..++.+.. .++. ...+..
T Consensus 266 EaIn~n~vvIIcGeTGsGKTT--QvP--QFLYEAGf~s~~---~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsY 338 (1172)
T KOG0926|consen 266 EAINENPVVIICGETGSGKTT--QVP--QFLYEAGFASEQ---SSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSY 338 (1172)
T ss_pred HHhhcCCeEEEecCCCCCccc--cch--HHHHHcccCCcc---CCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeE
Confidence 344444458999999999999 566 556666554321 1123356788899999888876654 3433 233455
Q ss_pred EEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHH----HHHHHHHcCCC--
Q 013189 255 VVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQ----IRKIVQQMDMP-- 328 (448)
Q Consensus 255 ~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~----i~~i~~~l~~~-- 328 (448)
.+.|.|+-. ....|.+.|-|.|+.-+++.- .|...+.+||||||.-.- +-+. +.+|+......
T Consensus 339 qIRfd~ti~--------e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSv--nTDILiGmLSRiV~LR~k~~k 407 (1172)
T KOG0926|consen 339 QIRFDGTIG--------EDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSV--NTDILIGMLSRIVPLRQKYYK 407 (1172)
T ss_pred EEEeccccC--------CCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccc--hHHHHHHHHHHHHHHHHHHhh
Confidence 566666432 236899999999999888654 489999999999996432 1111 22222221111
Q ss_pred ---CCCCceEEEEeccCChHHHHHHHHhhcC-------cEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhc
Q 013189 329 ---PPGMRQTMLFSATFPKEIQRLASDFLAN-------YIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVAN 398 (448)
Q Consensus 329 ---~~~~~q~i~~SAT~~~~v~~l~~~~l~~-------~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~ 398 (448)
.-+....|+||||+--. +|..+ |-.+.|+. ..-.+..+|..-.. .+.+.+..+.....
T Consensus 408 e~~~~kpLKLIIMSATLRVs------DFtenk~LFpi~pPlikVdA---RQfPVsIHF~krT~---~DYi~eAfrKtc~I 475 (1172)
T KOG0926|consen 408 EQCQIKPLKLIIMSATLRVS------DFTENKRLFPIPPPLIKVDA---RQFPVSIHFNKRTP---DDYIAEAFRKTCKI 475 (1172)
T ss_pred hhcccCceeEEEEeeeEEec------ccccCceecCCCCceeeeec---ccCceEEEeccCCC---chHHHHHHHHHHHH
Confidence 12246789999997422 33211 11233321 11122223322222 12222222221111
Q ss_pred CCCCCCccEEEEeCchHHHHHHHHHHHHC
Q 013189 399 GVHGKQALTLVFVETKKGADALEHWLYMN 427 (448)
Q Consensus 399 ~~~~~~~~~IIF~~t~~~a~~l~~~L~~~ 427 (448)
+..-+.+-+|||+.-..++++|++.|++.
T Consensus 476 H~kLP~G~ILVFvTGQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 476 HKKLPPGGILVFVTGQQEVDQLCEKLRKR 504 (1172)
T ss_pred hhcCCCCcEEEEEeChHHHHHHHHHHHhh
Confidence 11113677999999999999999999865
No 127
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.16 E-value=2e-09 Score=115.25 Aligned_cols=127 Identities=20% Similarity=0.163 Sum_probs=97.6
Q ss_pred CCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
.|.++|--.--.+. +--|+.+.||-|||+++.+|++-..+.. ..|-||++...||..=++.+..+
T Consensus 85 r~ydVQliGgl~Lh--~G~IAEM~TGEGKTL~atlpaylnAL~G-------------kgVhVVTvNdYLA~RDae~m~~v 149 (939)
T PRK12902 85 RHFDVQLIGGMVLH--EGQIAEMKTGEGKTLVATLPSYLNALTG-------------KGVHVVTVNDYLARRDAEWMGQV 149 (939)
T ss_pred CcchhHHHhhhhhc--CCceeeecCCCChhHHHHHHHHHHhhcC-------------CCeEEEeCCHHHHHhHHHHHHHH
Confidence 57777766554443 4468999999999999999988655443 23899999999999999999999
Q ss_pred cccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHH-----HHHHhc--ccccCCCeeEEEEecCCccC
Q 013189 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-----VDLLER--ARVSLQMIRYLALDEADRML 310 (448)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L-----~~~l~~--~~~~l~~v~~lVlDEah~ll 310 (448)
....|+.|.++.++....+ +...-.|||+++|+..| .|.+.. .......+.|.||||+|.+|
T Consensus 150 y~~LGLtvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 150 HRFLGLSVGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHHhCCeEEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 9999999999887776543 33445799999999998 333322 11235778899999999875
No 128
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.16 E-value=5.5e-10 Score=118.91 Aligned_cols=222 Identities=19% Similarity=0.202 Sum_probs=142.2
Q ss_pred CCCHHHHhHhhhHhcC----CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013189 167 KPTPVQRHAIPISIGG----RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g----~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~ 242 (448)
.+++-|+.++..+... .-.++.+-||||||.+|+- ++...+..+ -.+|||+|-..|--|+.+.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~-~i~~~L~~G------------kqvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLE-AIAKVLAQG------------KQVLVLVPEIALTPQLLAR 264 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHH-HHHHHHHcC------------CEEEEEeccccchHHHHHH
Confidence 4677899999988654 5689999999999999865 444444332 3599999999999999999
Q ss_pred HHHhcccCCcEEEEEECCCCHHHHHHHHhc----CCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccC---cCCCH
Q 013189 243 AKKFSYQTGVKVVVAYGGAPINQQLRELER----GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRML---DMGFE 315 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll---~~gf~ 315 (448)
++... +.++.+++++.+..+....+.+ ...|+|+|=-.| -..|+++.++||||=|--. +.+.+
T Consensus 265 f~~rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~pr 334 (730)
T COG1198 265 FKARF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPR 334 (730)
T ss_pred HHHHh---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCC
Confidence 98753 5788899999887766555543 479999994433 2358999999999999532 11222
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEeccc-chH-----HHHH
Q 013189 316 PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHES-DKR-----SHLM 389 (448)
Q Consensus 316 ~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~-~k~-----~~L~ 389 (448)
-+.+.+.-.... ..++++|+-|||.+-+-...+ .-..+..+.+.............++.+..+ .+. ..|+
T Consensus 335 YhARdvA~~Ra~--~~~~pvvLgSATPSLES~~~~--~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll 410 (730)
T COG1198 335 YHARDVAVLRAK--KENAPVVLGSATPSLESYANA--ESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALL 410 (730)
T ss_pred cCHHHHHHHHHH--HhCCCEEEecCCCCHHHHHhh--hcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHH
Confidence 222322222110 245789999999765544333 222344444332222222222233333222 222 4566
Q ss_pred HHHHHHHhcCCCCCCccEEEEeCchHHHHHH
Q 013189 390 DLLHAQVANGVHGKQALTLVFVETKKGADAL 420 (448)
Q Consensus 390 ~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l 420 (448)
+.+...... +.++|+|.|++--+-.+
T Consensus 411 ~~i~~~l~~-----geQ~llflnRRGys~~l 436 (730)
T COG1198 411 EAIRKTLER-----GEQVLLFLNRRGYAPLL 436 (730)
T ss_pred HHHHHHHhc-----CCeEEEEEccCCcccee
Confidence 666655432 77899999998765433
No 129
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.10 E-value=5.4e-09 Score=108.56 Aligned_cols=254 Identities=21% Similarity=0.288 Sum_probs=159.2
Q ss_pred CCCHHHHhHhhhHh----cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013189 167 KPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~ 242 (448)
.++++|.+-+.++. +|-+.|+.-+.|-|||+. .|.+|..+..... ..+| -||+||.-.|.+. .++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~--------~~GP-fLVi~P~StL~NW-~~E 235 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKG--------IPGP-FLVIAPKSTLDNW-MNE 235 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcC--------CCCC-eEEEeeHhhHHHH-HHH
Confidence 47889999887654 577899999999999997 4555554443221 1233 5999999999765 677
Q ss_pred HHHhcccCCcEEEEEECCCCHHHHHH--HH-hcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHH
Q 013189 243 AKKFSYQTGVKVVVAYGGAPINQQLR--EL-ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIR 319 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~--~l-~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~ 319 (448)
+++|+ +++++++++|......... .+ ....+|+|+|.+..+.- +..+.--..+|+||||||++-.. ...+.
T Consensus 236 f~rf~--P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~--~s~L~ 309 (971)
T KOG0385|consen 236 FKRFT--PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNE--KSKLS 309 (971)
T ss_pred HHHhC--CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcch--hhHHH
Confidence 88886 4688899888764332221 11 12579999999987654 22223346799999999998664 24455
Q ss_pred HHHHHcCCCCCCCceEEEEeccC-ChHH---HHHHH-------------------------------------Hhh----
Q 013189 320 KIVQQMDMPPPGMRQTMLFSATF-PKEI---QRLAS-------------------------------------DFL---- 354 (448)
Q Consensus 320 ~i~~~l~~~~~~~~q~i~~SAT~-~~~v---~~l~~-------------------------------------~~l---- 354 (448)
+++..+.... -+++|.|. -..+ -.|.. -|+
T Consensus 310 ~~lr~f~~~n-----rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~ 384 (971)
T KOG0385|consen 310 KILREFKTDN-----RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRI 384 (971)
T ss_pred HHHHHhcccc-----eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHH
Confidence 6666663221 35666662 0000 00000 000
Q ss_pred --------c--CcEEEEecccc------------------C-------cccce--------eEEE---------------
Q 013189 355 --------A--NYIFLAVGRVG------------------S-------STDLI--------VQRV--------------- 376 (448)
Q Consensus 355 --------~--~~~~i~v~~~~------------------~-------~~~~i--------~q~~--------------- 376 (448)
. ..+.+.++-.. . .+.+| .+-|
T Consensus 385 K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttde 464 (971)
T KOG0385|consen 385 KSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDE 464 (971)
T ss_pred HHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcch
Confidence 0 00111111000 0 00000 0000
Q ss_pred EEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 377 EFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 377 ~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+.+....|...|-+||...... +.++|||..=-+.-+-|.+++.-.++...-|.|..+-+||.++|
T Consensus 465 hLv~nSGKm~vLDkLL~~Lk~~-----GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI 530 (971)
T KOG0385|consen 465 HLVTNSGKMLVLDKLLPKLKEQ-----GHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAI 530 (971)
T ss_pred HHHhcCcceehHHHHHHHHHhC-----CCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHH
Confidence 0112244666666666665533 78999999999999999999999999999999999999999887
No 130
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.08 E-value=1.6e-09 Score=105.16 Aligned_cols=73 Identities=18% Similarity=0.117 Sum_probs=57.5
Q ss_pred CCCHHHHhHhh----hHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013189 167 KPTPVQRHAIP----ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 167 ~pt~~Q~~~i~----~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~ 242 (448)
.|+|.|.+.+. .+..+.++++.||||+|||++|++|++.++...+.. ....+++|.++|..+..|....
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-------~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-------IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-------ccccceeEEeccHHHHHHHHHH
Confidence 36999999554 455789999999999999999999999877643311 0123699999999999998888
Q ss_pred HHHh
Q 013189 243 AKKF 246 (448)
Q Consensus 243 ~~~~ 246 (448)
++++
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 8765
No 131
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.08 E-value=1.6e-09 Score=105.16 Aligned_cols=73 Identities=18% Similarity=0.117 Sum_probs=57.5
Q ss_pred CCCHHHHhHhh----hHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013189 167 KPTPVQRHAIP----ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 167 ~pt~~Q~~~i~----~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~ 242 (448)
.|+|.|.+.+. .+..+.++++.||||+|||++|++|++.++...+.. ....+++|.++|..+..|....
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-------~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-------IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-------ccccceeEEeccHHHHHHHHHH
Confidence 36999999554 455789999999999999999999999877643311 0123699999999999998888
Q ss_pred HHHh
Q 013189 243 AKKF 246 (448)
Q Consensus 243 ~~~~ 246 (448)
++++
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 8765
No 132
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.08 E-value=4.8e-09 Score=107.48 Aligned_cols=236 Identities=14% Similarity=0.121 Sum_probs=133.5
Q ss_pred hHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH-hcccCCcEEE-
Q 013189 178 ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK-FSYQTGVKVV- 255 (448)
Q Consensus 178 ~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~-~~~~~~~~~~- 255 (448)
.|-.++-++|++.||||||+. +| +.|+..++.. ...+-|..|.|.-|..++..+.. +....|-.|.
T Consensus 367 ~ir~n~vvvivgETGSGKTTQ--l~--QyL~edGY~~--------~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGY 434 (1042)
T KOG0924|consen 367 VIRENQVVVIVGETGSGKTTQ--LA--QYLYEDGYAD--------NGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGY 434 (1042)
T ss_pred HHhhCcEEEEEecCCCCchhh--hH--HHHHhccccc--------CCeeeecCchHHHHHHHHHHHHHHhCCccccccce
Confidence 344566799999999999995 33 4555555432 23577888999999998887765 3222232221
Q ss_pred -EEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCce
Q 013189 256 -VAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQ 334 (448)
Q Consensus 256 -~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q 334 (448)
+.+.+... ...-|-+.|-|.|+.-..... +|...+.||+||||.-.-. .+.+.-|++.... ...+..
T Consensus 435 sIRFEdvT~--------~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslN--tDilfGllk~~la-rRrdlK 502 (1042)
T KOG0924|consen 435 SIRFEDVTS--------EDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLN--TDILFGLLKKVLA-RRRDLK 502 (1042)
T ss_pred EEEeeecCC--------CceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccc--hHHHHHHHHHHHH-hhccce
Confidence 22222111 124688999999986544333 4888999999999964221 1122222222211 134678
Q ss_pred EEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCch
Q 013189 335 TMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETK 414 (448)
Q Consensus 335 ~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~ 414 (448)
+|++|||+.. +.++.-|-.-|.+...++. .+ +...|...+-++=.++. +.....-+..+..+-+|||..-.
T Consensus 503 liVtSATm~a--~kf~nfFgn~p~f~IpGRT---yP-V~~~~~k~p~eDYVeaa---vkq~v~Ihl~~~~GdilIfmtGq 573 (1042)
T KOG0924|consen 503 LIVTSATMDA--QKFSNFFGNCPQFTIPGRT---YP-VEIMYTKTPVEDYVEAA---VKQAVQIHLSGPPGDILIFMTGQ 573 (1042)
T ss_pred EEEeeccccH--HHHHHHhCCCceeeecCCc---cc-eEEEeccCchHHHHHHH---HhhheEeeccCCCCCEEEecCCC
Confidence 9999999875 4555544434444433322 11 12222222222222222 22211112222356699999887
Q ss_pred HHHHHHHHHH----HHC------CCCeEEecCCCCHHHHHHH
Q 013189 415 KGADALEHWL----YMN------GFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 415 ~~a~~l~~~L----~~~------g~~~~~iHg~~~q~eR~~~ 446 (448)
+..+..+..+ .+. ++.+..|.+.|++.-..++
T Consensus 574 ediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~ki 615 (1042)
T KOG0924|consen 574 EDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKI 615 (1042)
T ss_pred cchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhh
Confidence 7665555444 332 5778899999988755444
No 133
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.08 E-value=7.5e-10 Score=94.15 Aligned_cols=138 Identities=19% Similarity=0.176 Sum_probs=80.7
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECC
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGG 260 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg 260 (448)
+|+=.++...+|+|||.-.+.-++...+.. +.++|||.|||.++..+++.++... +++..-.-+
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~------------~~rvLvL~PTRvva~em~~aL~~~~----~~~~t~~~~ 66 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR------------RLRVLVLAPTRVVAEEMYEALKGLP----VRFHTNARM 66 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT------------T--EEEEESSHHHHHHHHHHTTTSS----EEEESTTSS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc------------cCeEEEecccHHHHHHHHHHHhcCC----cccCceeee
Confidence 344578899999999998665555544433 2469999999999999999887642 222110000
Q ss_pred CCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEec
Q 013189 261 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 261 ~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
. ....+--|-|.|-..+..++.+ ...+.+.+++|+||||.+ |.. .-..+-.+..+.. .....+|++||
T Consensus 67 ---~----~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~-Dp~-sIA~rg~l~~~~~--~g~~~~i~mTA 134 (148)
T PF07652_consen 67 ---R----THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT-DPT-SIAARGYLRELAE--SGEAKVIFMTA 134 (148)
T ss_dssp -----------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SHH-HHHHHHHHHHHHH--TTS-EEEEEES
T ss_pred ---c----cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC-CHH-HHhhheeHHHhhh--ccCeeEEEEeC
Confidence 0 1122346788899998888766 556889999999999974 311 0111122222211 23357999999
Q ss_pred cCChHH
Q 013189 341 TFPKEI 346 (448)
Q Consensus 341 T~~~~v 346 (448)
|.|-..
T Consensus 135 TPPG~~ 140 (148)
T PF07652_consen 135 TPPGSE 140 (148)
T ss_dssp S-TT--
T ss_pred CCCCCC
Confidence 988654
No 134
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.05 E-value=1.4e-08 Score=108.49 Aligned_cols=128 Identities=21% Similarity=0.176 Sum_probs=96.3
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
..|.++|.-.--.+..| -|+...||=|||++..+|++-..+... .|-|++..--||.-=++.+..
T Consensus 77 ~r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~Gk-------------gVhVVTvNdYLA~RDae~mg~ 141 (925)
T PRK12903 77 KRPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALTGK-------------GVIVSTVNEYLAERDAEEMGK 141 (925)
T ss_pred CCcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhcCC-------------ceEEEecchhhhhhhHHHHHH
Confidence 36888888777666666 479999999999999999875444322 277888888899888888888
Q ss_pred hcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHH-HHHHhccc------ccCCCeeEEEEecCCccC
Q 013189 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQMIRYLALDEADRML 310 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L-~~~l~~~~------~~l~~v~~lVlDEah~ll 310 (448)
+....|+.+.++..+........ .-.|||+++|..-| .|+|+.+- .-...+.|.||||+|.+|
T Consensus 142 vy~fLGLsvG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 142 VFNFLGLSVGINKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred HHHHhCCceeeeCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 88888999998887766543322 33589999998887 45554321 124677899999999875
No 135
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.02 E-value=3.1e-08 Score=98.27 Aligned_cols=260 Identities=14% Similarity=0.069 Sum_probs=147.0
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHhH-hhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCC
Q 013189 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHA-IPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (448)
Q Consensus 144 ~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~-i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 222 (448)
++.|...+.++.-.+.+++.. .-|-=-|++- +..+.+++-+++++.||||||+..-..++...+...
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~-~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~----------- 91 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRR-ELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL----------- 91 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHh-cCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-----------
Confidence 677888888888777776532 2233334444 456668888999999999999954333333332221
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEE
Q 013189 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 223 ~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lV 302 (448)
..+.+..|.|.-|.+++.+...- .++....-.|-.-..+.. .....=+-+||-|.|+.-..... .+....++|
T Consensus 92 -~~v~CTQprrvaamsva~RVadE---MDv~lG~EVGysIrfEdC--~~~~T~Lky~tDgmLlrEams~p-~l~~y~vii 164 (699)
T KOG0925|consen 92 -TGVACTQPRRVAAMSVAQRVADE---MDVTLGEEVGYSIRFEDC--TSPNTLLKYCTDGMLLREAMSDP-LLGRYGVII 164 (699)
T ss_pred -cceeecCchHHHHHHHHHHHHHH---hccccchhcccccccccc--CChhHHHHHhcchHHHHHHhhCc-ccccccEEE
Confidence 23888999999999887665442 222221111111000000 00000123566676665554444 488999999
Q ss_pred EecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEeccc
Q 013189 303 LDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHES 382 (448)
Q Consensus 303 lDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~ 382 (448)
|||||.-.- ..+.+.-+++..... +.+.++|.+|||+... -...|..|.-.+.|.. ...+..+|..-.+.
T Consensus 165 LDeahERtl--ATDiLmGllk~v~~~-rpdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg----~~PvEi~Yt~e~er 234 (699)
T KOG0925|consen 165 LDEAHERTL--ATDILMGLLKEVVRN-RPDLKLVVMSATLDAE---KFQRYFGNAPLLAVPG----THPVEIFYTPEPER 234 (699)
T ss_pred echhhhhhH--HHHHHHHHHHHHHhh-CCCceEEEeecccchH---HHHHHhCCCCeeecCC----CCceEEEecCCCCh
Confidence 999996321 012222333333222 2478899999998643 2335666655555532 22233333333334
Q ss_pred chHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC---------CCCeEEec
Q 013189 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN---------GFPATTIH 435 (448)
Q Consensus 383 ~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~---------g~~~~~iH 435 (448)
+-.+..+..+-..-.. +..+-+|||....++.+..++.+... -+.|..+|
T Consensus 235 DylEaairtV~qih~~---ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy 293 (699)
T KOG0925|consen 235 DYLEAAIRTVLQIHMC---EEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY 293 (699)
T ss_pred hHHHHHHHHHHHHHhc---cCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC
Confidence 4444444433332211 12566999999999988888877532 25677777
No 136
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.00 E-value=1.1e-08 Score=109.57 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=52.4
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 381 ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 381 ~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
...+...|++.+..... ++.++||||+|++.|+.|+++|...|+++..+||++++.+|.+++
T Consensus 424 ~~~qi~~Ll~eI~~~~~-----~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l 485 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVA-----RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEII 485 (655)
T ss_pred ccchHHHHHHHHHHHHc-----CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHH
Confidence 34456677777766542 267899999999999999999999999999999999999998876
No 137
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.96 E-value=5.4e-09 Score=101.81 Aligned_cols=145 Identities=21% Similarity=0.191 Sum_probs=83.8
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCC
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGA 261 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~ 261 (448)
.+.++++-.+|+|||+..+..+ ..+...... ...-.+|||||. .+..|...++.++......++..+.+..
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~-~~l~~~~~~-------~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~ 95 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALI-SYLKNEFPQ-------RGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDS 95 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHH-HHHHHCCTT-------SS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSC
T ss_pred CCCEEEEECCCCCchhhhhhhh-hhhhhcccc-------ccccceeEeecc-chhhhhhhhhcccccccccccccccccc
Confidence 4569999999999999865443 333332210 111139999999 8889999999999865456666655554
Q ss_pred CHHHHHHHHhcCCcEEEeChhHHHHHHhc---ccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEE
Q 013189 262 PINQQLRELERGVDILVATPGRLVDLLER---ARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLF 338 (448)
Q Consensus 262 ~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~---~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~ 338 (448)
.............+|+|+|.+.+...... ..+..-..++||+||+|.+-... ......+..+. ....+++
T Consensus 96 ~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~--s~~~~~l~~l~-----~~~~~lL 168 (299)
T PF00176_consen 96 ERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD--SKRYKALRKLR-----ARYRWLL 168 (299)
T ss_dssp HHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT--SHHHHHHHCCC-----ECEEEEE
T ss_pred ccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc--ccccccccccc-----cceEEee
Confidence 12222222233579999999999811100 11122348999999999984332 33444444452 3457899
Q ss_pred eccC
Q 013189 339 SATF 342 (448)
Q Consensus 339 SAT~ 342 (448)
|||.
T Consensus 169 SgTP 172 (299)
T PF00176_consen 169 SGTP 172 (299)
T ss_dssp -SS-
T ss_pred cccc
Confidence 9995
No 138
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.90 E-value=1.7e-08 Score=112.88 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=59.1
Q ss_pred CCCCHHHHhHhhhH----hcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPIS----IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i----~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~ 241 (448)
-+++|-|.+.+..+ ..++++++.|+||+|||++|++|++...... +-++||-++|+.|-.|+..
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~------------~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKK------------EEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhcc------------CCeEEEEcCCHHHHHHHHH
Confidence 37999999966544 3678899999999999999999998655322 2349999999999999866
Q ss_pred H----HHHhcccCCcEEEEEEC
Q 013189 242 E----AKKFSYQTGVKVVVAYG 259 (448)
Q Consensus 242 ~----~~~~~~~~~~~~~~~~g 259 (448)
. ++++. ...++++++-|
T Consensus 324 kDiP~L~~~~-~~~~~~~~lKG 344 (928)
T PRK08074 324 KDIPLLQKIF-PFPVEAALLKG 344 (928)
T ss_pred hhHHHHHHHc-CCCceEEEEEc
Confidence 2 33332 22345555544
No 139
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.81 E-value=2.8e-07 Score=96.44 Aligned_cols=131 Identities=19% Similarity=0.207 Sum_probs=85.0
Q ss_pred CCCHHHHhHhhhHh----cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013189 167 KPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~ 242 (448)
++.++|+..+..+. .+.--|+--..|-|||... +..|..+.+... ....+|||||.. ++.|..++
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~k---------~~~paLIVCP~T-ii~qW~~E 273 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSGK---------LTKPALIVCPAT-IIHQWMKE 273 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhccc---------ccCceEEEccHH-HHHHHHHH
Confidence 46789999998764 3455788889999999863 333444443321 113499999985 55677888
Q ss_pred HHHhcccCCcEEEEEECCCCH--------HHHHHH-Hh----cCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCcc
Q 013189 243 AKKFSYQTGVKVVVAYGGAPI--------NQQLRE-LE----RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~--------~~~~~~-l~----~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~l 309 (448)
+..+. +.+++.++++.... ...... +. .+..|+|+|...+.- ....+.--...|+|+||.|++
T Consensus 274 ~~~w~--p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~I 349 (923)
T KOG0387|consen 274 FQTWW--PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRI 349 (923)
T ss_pred HHHhC--cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccc
Confidence 88875 35788888876552 111111 21 134799999876632 222344456789999999987
Q ss_pred CcC
Q 013189 310 LDM 312 (448)
Q Consensus 310 l~~ 312 (448)
-..
T Consensus 350 rNp 352 (923)
T KOG0387|consen 350 RNP 352 (923)
T ss_pred cCC
Confidence 543
No 140
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.76 E-value=2.1e-07 Score=100.91 Aligned_cols=127 Identities=18% Similarity=0.126 Sum_probs=90.5
Q ss_pred CCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
.|.++|--.--.+.. --|+.+.||=|||++..+|++-..+... -|-||+..--||.-=.+.+..+
T Consensus 138 ~~ydVQLiGgivLh~--G~IAEM~TGEGKTLvatlp~yLnAL~G~-------------gVHvVTvNDYLA~RDaewm~p~ 202 (1025)
T PRK12900 138 VPYDVQLIGGIVLHS--GKISEMATGEGKTLVSTLPTFLNALTGR-------------GVHVVTVNDYLAQRDKEWMNPV 202 (1025)
T ss_pred cccchHHhhhHHhhc--CCccccCCCCCcchHhHHHHHHHHHcCC-------------CcEEEeechHhhhhhHHHHHHH
Confidence 366666554444444 4578999999999999999976665432 1666777778888878888888
Q ss_pred cccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHH-HHHHhccc------ccCCCeeEEEEecCCccC
Q 013189 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQMIRYLALDEADRML 310 (448)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L-~~~l~~~~------~~l~~v~~lVlDEah~ll 310 (448)
....|+.|.++..+.+.. .+.-.-.|||+++|..-| .|+|+.+- .-.....|.||||+|.+|
T Consensus 203 y~flGLtVg~i~~~~~~~--~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 203 FEFHGLSVGVILNTMRPE--ERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred HHHhCCeeeeeCCCCCHH--HHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 888899999886655543 344455699999998776 44443221 224667899999999764
No 141
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.75 E-value=3.1e-07 Score=97.69 Aligned_cols=228 Identities=16% Similarity=0.177 Sum_probs=134.0
Q ss_pred CeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCH
Q 013189 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPI 263 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~ 263 (448)
-.++.||.|||||.+.. ..|...+.. ..-++|+|+..+.|+.++.+.++..... +.. .|.....
T Consensus 51 V~vVRSpMGTGKTtaLi-~wLk~~l~~-----------~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv---~Y~d~~~ 114 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALI-RWLKDALKN-----------PDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV---NYLDSDD 114 (824)
T ss_pred eEEEECCCCCCcHHHHH-HHHHHhccC-----------CCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce---eeecccc
Confidence 37899999999999753 333333221 1235999999999999999999875321 111 1211110
Q ss_pred HHHHHHHh-cCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHH---HHHHHcCCCCCCCceEEEEe
Q 013189 264 NQQLRELE-RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIR---KIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 264 ~~~~~~l~-~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~---~i~~~l~~~~~~~~q~i~~S 339 (448)
..+. +..+-|++..+.|..+.. -.+.+.++|||||+...+..-|.+.++ ..++.+...-.....+|++-
T Consensus 115 ----~~i~~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~D 187 (824)
T PF02399_consen 115 ----YIIDGRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMD 187 (824)
T ss_pred ----ccccccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEec
Confidence 0111 124677777777765532 246779999999998876543333222 22221111113445699999
Q ss_pred ccCChHHHHHHHHhhcC-cEEEEeccccCcccceeEEEEEecc-------------------------------------
Q 013189 340 ATFPKEIQRLASDFLAN-YIFLAVGRVGSSTDLIVQRVEFVHE------------------------------------- 381 (448)
Q Consensus 340 AT~~~~v~~l~~~~l~~-~~~i~v~~~~~~~~~i~q~~~~~~~------------------------------------- 381 (448)
||+++..-+++..+..+ .+.+.+.. ..... ...+-..+-.
T Consensus 188 A~ln~~tvdFl~~~Rp~~~i~vI~n~-y~~~~-fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (824)
T PF02399_consen 188 ADLNDQTVDFLASCRPDENIHVIVNT-YASPG-FSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAIS 265 (824)
T ss_pred CCCCHHHHHHHHHhCCCCcEEEEEee-eecCC-cccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccc
Confidence 99999999999887653 33333321 11100 0000000000
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHH
Q 013189 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQR 442 (448)
Q Consensus 382 ~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~e 442 (448)
.+.. .....|..... .++.+-|||.|+..++.++++......++..++|+.+..+
T Consensus 266 ~~~~-tF~~~L~~~L~-----~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d 320 (824)
T PF02399_consen 266 NDET-TFFSELLARLN-----AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED 320 (824)
T ss_pred cchh-hHHHHHHHHHh-----CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc
Confidence 1111 22222222221 1566889999999999999999888888999998776654
No 142
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.73 E-value=6.2e-07 Score=97.90 Aligned_cols=168 Identities=21% Similarity=0.153 Sum_probs=101.7
Q ss_pred CHHHHhHhhhHhc----CCC----eeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013189 169 TPVQRHAIPISIG----GRD----LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 169 t~~Q~~~i~~i~~----g~d----~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~ 240 (448)
..+|-+|+..+.. ..+ +|-.|.||||||++=. =|+..+..+ ..+++..|-.-.|.|-.|.-
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-RImyaLsd~----------~~g~RfsiALGLRTLTLQTG 478 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-RAMYALRDD----------KQGARFAIALGLRSLTLQTG 478 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-HHHHHhCCC----------CCCceEEEEccccceeccch
Confidence 4589999987653 222 6778999999999743 233333221 34567777888888888888
Q ss_pred HHHHHhcccCCcEEEEEECCCCHHHHHHH-------------------------------------------Hhc-----
Q 013189 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRE-------------------------------------------LER----- 272 (448)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~-------------------------------------------l~~----- 272 (448)
+.+++-..-..-...+++|+..+.+-... +.+
T Consensus 479 da~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~ 558 (1110)
T TIGR02562 479 HALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEK 558 (1110)
T ss_pred HHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhh
Confidence 77776543333455555665443322210 000
Q ss_pred ---CCcEEEeChhHHHHHHhcc---cccCC--C--eeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccC
Q 013189 273 ---GVDILVATPGRLVDLLERA---RVSLQ--M--IRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 273 ---~~~Ilv~TP~~L~~~l~~~---~~~l~--~--v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
...|+|||++.++...... ...+. . =+.|||||+|.+-. .....|..++..+. .....+|++|||+
T Consensus 559 rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~-~~~~~L~rlL~w~~---~lG~~VlLmSATL 634 (1110)
T TIGR02562 559 TLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEP-EDLPALLRLVQLAG---LLGSRVLLSSATL 634 (1110)
T ss_pred hhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCH-HHHHHHHHHHHHHH---HcCCCEEEEeCCC
Confidence 1379999999998877321 11111 1 25699999996522 22234455554332 2245699999999
Q ss_pred ChHHHHHHH
Q 013189 343 PKEIQRLAS 351 (448)
Q Consensus 343 ~~~v~~l~~ 351 (448)
|+.+...+.
T Consensus 635 P~~l~~~L~ 643 (1110)
T TIGR02562 635 PPALVKTLF 643 (1110)
T ss_pred CHHHHHHHH
Confidence 988765443
No 143
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.72 E-value=8.3e-07 Score=95.70 Aligned_cols=61 Identities=25% Similarity=0.250 Sum_probs=51.9
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 382 ~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
..+...|++.|..... .+.++||||+|++.|+.|++.|...|+++..+||++++.+|.+++
T Consensus 429 ~~q~~~L~~~L~~~~~-----~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l 489 (652)
T PRK05298 429 KGQVDDLLSEIRKRVA-----KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEII 489 (652)
T ss_pred cccHHHHHHHHHHHHh-----CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHH
Confidence 3456677777766543 267899999999999999999999999999999999999999876
No 144
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.71 E-value=1.4e-07 Score=95.20 Aligned_cols=271 Identities=9% Similarity=-0.075 Sum_probs=173.5
Q ss_pred HHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHH
Q 013189 158 LNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSS 237 (448)
Q Consensus 158 ~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~ 237 (448)
+.+..+..+....+|.++|..+..|+++++.-.|-+||.++|.+.....+..... ...+++.||.+++.
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~-----------s~~~~~~~~~~~~~ 345 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHA-----------TNSLLPSEMVEHLR 345 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcc-----------cceecchhHHHHhh
Confidence 3444556667889999999999999999999999999999999998876654321 23688999999987
Q ss_pred HHHHHHHHhc-ccC--CcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcc----cccCCCeeEEEEecCCccC
Q 013189 238 QIHVEAKKFS-YQT--GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA----RVSLQMIRYLALDEADRML 310 (448)
Q Consensus 238 qi~~~~~~~~-~~~--~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~----~~~l~~v~~lVlDEah~ll 310 (448)
.....+.-.. ... .--++-.+.+..........+.+.++|++.|......+.-+ ...+-...++++||+|..+
T Consensus 346 ~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~ 425 (1034)
T KOG4150|consen 346 NGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYL 425 (1034)
T ss_pred ccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeee
Confidence 6543322111 111 11233445666655566666778999999999987765332 2334456789999999875
Q ss_pred cCC---CHHHHHHHHHHcCCC-CCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecc-----
Q 013189 311 DMG---FEPQIRKIVQQMDMP-PPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE----- 381 (448)
Q Consensus 311 ~~g---f~~~i~~i~~~l~~~-~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~----- 381 (448)
-.- ...+++.+...+... .....|++-+|||+...++.+-.-+--+.+.+. ..+..+..-.+.+.+.+.
T Consensus 426 ~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li--~~DGSPs~~K~~V~WNP~~~P~~ 503 (1034)
T KOG4150|consen 426 FPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELV--TIDGSPSSEKLFVLWNPSAPPTS 503 (1034)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEE--EecCCCCccceEEEeCCCCCCcc
Confidence 431 334555555554221 134579999999998888765544433333332 222233333444444322
Q ss_pred ----cchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC----C----CCeEEecCCCCHHHHHHH
Q 013189 382 ----SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN----G----FPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 382 ----~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~----g----~~~~~iHg~~~q~eR~~~ 446 (448)
+.+......++.....+ +-++|-||.+++-|+.|....+.. + -.++.|.|+...++|.++
T Consensus 504 ~~~~~~~i~E~s~~~~~~i~~-----~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKI 575 (1034)
T KOG4150|consen 504 KSEKSSKVVEVSHLFAEMVQH-----GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKI 575 (1034)
T ss_pred hhhhhhHHHHHHHHHHHHHHc-----CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHH
Confidence 22333344444444432 567999999999999887654431 2 136678888888888765
No 145
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.69 E-value=2.6e-09 Score=114.17 Aligned_cols=148 Identities=22% Similarity=0.293 Sum_probs=113.2
Q ss_pred CCCCCHHHHhHhhhHh-cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013189 165 YVKPTPVQRHAIPISI-GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 165 ~~~pt~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~ 243 (448)
+..+.|+|...+-.+. ...+.++.+|||+|||++|.+.++..+...+ ..++++++|...|+..-.+..
T Consensus 925 ~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p-----------~~kvvyIap~kalvker~~Dw 993 (1230)
T KOG0952|consen 925 YKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP-----------GSKVVYIAPDKALVKERSDDW 993 (1230)
T ss_pred hcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC-----------CccEEEEcCCchhhcccccch
Confidence 3467788888876554 4678999999999999999998886654432 246999999999999988888
Q ss_pred HHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhc--ccccCCCeeEEEEecCCccCcCCCHHHHHHH
Q 013189 244 KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER--ARVSLQMIRYLALDEADRMLDMGFEPQIRKI 321 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~--~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i 321 (448)
.+.....+++++-+.|...... ..+. ..+|+|+||+++..+... ..-.+.+|+.+|+||.|++.+ +..+.++.|
T Consensus 994 ~~r~~~~g~k~ie~tgd~~pd~--~~v~-~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~i 1069 (1230)
T KOG0952|consen 994 SKRDELPGIKVIELTGDVTPDV--KAVR-EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVI 1069 (1230)
T ss_pred hhhcccCCceeEeccCccCCCh--hhee-cCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEE
Confidence 8776666999999888876542 2222 379999999999888874 344689999999999998766 444555555
Q ss_pred HHHcCC
Q 013189 322 VQQMDM 327 (448)
Q Consensus 322 ~~~l~~ 327 (448)
....+.
T Consensus 1070 vsr~n~ 1075 (1230)
T KOG0952|consen 1070 VSRMNY 1075 (1230)
T ss_pred eecccc
Confidence 555543
No 146
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.68 E-value=1.5e-07 Score=89.60 Aligned_cols=132 Identities=20% Similarity=0.232 Sum_probs=97.3
Q ss_pred HCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013189 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~ 241 (448)
+.--..|+++|.-++-.+..|+ ++...||=|||++..+|++-..+.. ..|=|++....||..=++
T Consensus 72 r~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G-------------~~V~vvT~NdyLA~RD~~ 136 (266)
T PF07517_consen 72 RTLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQG-------------KGVHVVTSNDYLAKRDAE 136 (266)
T ss_dssp HHTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTS-------------S-EEEEESSHHHHHHHHH
T ss_pred HHcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhc-------------CCcEEEeccHHHhhccHH
Confidence 3344579999999997776665 9999999999999988887665543 248899999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHH-HHHhcc----cc--cCCCeeEEEEecCCccC
Q 013189 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLV-DLLERA----RV--SLQMIRYLALDEADRML 310 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~-~~l~~~----~~--~l~~v~~lVlDEah~ll 310 (448)
.+..|....++.+.+++.+.+....... ..+||+++|...|. |+|... .. ......++||||+|.++
T Consensus 137 ~~~~~y~~LGlsv~~~~~~~~~~~r~~~--Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 137 EMRPFYEFLGLSVGIITSDMSSEERREA--YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHHHHTT--EEEEETTTEHHHHHHH--HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHHHHhhhccccCccccCHHHHHHH--HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999999999999998885443222 23789999999984 455331 11 24788999999999875
No 147
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.63 E-value=1e-05 Score=86.60 Aligned_cols=160 Identities=19% Similarity=0.222 Sum_probs=106.0
Q ss_pred CCCHHHHhHhhhHh---cCC-------CeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHH
Q 013189 167 KPTPVQRHAIPISI---GGR-------DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~---~g~-------d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 236 (448)
.+.|.|++.+.-+. .|. -+|+.-..|+|||+. +++.|..+++..+... ..-.++|||+|. .|+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~-----~~~~k~lVV~P~-sLv 310 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAK-----PLINKPLVVAPS-SLV 310 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCcc-----ccccccEEEccH-HHH
Confidence 47899999987543 232 277777899999998 4566666665543211 122458999997 577
Q ss_pred HHHHHHHHHhcccCCcEEEEEECCCCH--HHHHHHHh-----cCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCcc
Q 013189 237 SQIHVEAKKFSYQTGVKVVVAYGGAPI--NQQLRELE-----RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (448)
Q Consensus 237 ~qi~~~~~~~~~~~~~~~~~~~gg~~~--~~~~~~l~-----~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~l 309 (448)
.-..+++.++.....+....+++.... ..+..-+. ...-|++-+.+.+.+.++. +.+..+.+||+||.|++
T Consensus 311 ~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrl 388 (776)
T KOG0390|consen 311 NNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRL 388 (776)
T ss_pred HHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCc
Confidence 888999999876656777788887763 11111111 1236788888888766653 34678999999999998
Q ss_pred CcCCCHHHHHHHHHHcCCCCCCCceEEEEeccC
Q 013189 310 LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 310 l~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
-.. ...+...+..++. .+ -|++|.|+
T Consensus 389 kN~--~s~~~kaL~~l~t----~r-RVLLSGTp 414 (776)
T KOG0390|consen 389 KNS--DSLTLKALSSLKT----PR-RVLLTGTP 414 (776)
T ss_pred cch--hhHHHHHHHhcCC----Cc-eEEeeCCc
Confidence 543 2455566666632 22 46778883
No 148
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.61 E-value=2.9e-07 Score=98.56 Aligned_cols=140 Identities=15% Similarity=0.125 Sum_probs=93.6
Q ss_pred eccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHH
Q 013189 188 CAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL 267 (448)
Q Consensus 188 ~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 267 (448)
.+-+|||||.+|+-.+-. .+.. +..+|||+|...|..|+.+.+++... ...+.+++++.+..+..
T Consensus 166 ~~~~GSGKTevyl~~i~~-~l~~------------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~ 230 (665)
T PRK14873 166 QALPGEDWARRLAAAAAA-TLRA------------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRY 230 (665)
T ss_pred hcCCCCcHHHHHHHHHHH-HHHc------------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHH
Confidence 333699999998755443 3332 23599999999999999999987542 25688889888876554
Q ss_pred HHH---hcC-CcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccC---cCCCHHHHHHHHHHcCCCCCCCceEEEEec
Q 013189 268 REL---ERG-VDILVATPGRLVDLLERARVSLQMIRYLALDEADRML---DMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 268 ~~l---~~~-~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll---~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
+.+ ..| +.|+|+|-.-+ ...+.++.+|||||=|--. +.+...+.+.+...... ..+..+|+.||
T Consensus 231 ~~w~~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~--~~~~~lvLgSa 301 (665)
T PRK14873 231 RRWLAVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH--QHGCALLIGGH 301 (665)
T ss_pred HHHHHHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH--HcCCcEEEECC
Confidence 443 334 79999995433 2368899999999998432 11222233333322211 23567999999
Q ss_pred cCChHHHHHHH
Q 013189 341 TFPKEIQRLAS 351 (448)
Q Consensus 341 T~~~~v~~l~~ 351 (448)
|.+-+...++.
T Consensus 302 TPSles~~~~~ 312 (665)
T PRK14873 302 ARTAEAQALVE 312 (665)
T ss_pred CCCHHHHHHHh
Confidence 98877665554
No 149
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.53 E-value=1.3e-06 Score=95.45 Aligned_cols=162 Identities=20% Similarity=0.261 Sum_probs=105.8
Q ss_pred CCCCHHHHhHhhhHh----cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~ 241 (448)
..++.+|-.-+..++ ++.++|+.-..|-|||+. .+..|..|++... ..+| -|||+|.-.+... ..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~--------~~gp-flvvvplst~~~W-~~ 437 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQ--------IHGP-FLVVVPLSTITAW-ER 437 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhh--------ccCC-eEEEeehhhhHHH-HH
Confidence 457788999988765 578999999999999986 3444555554321 1223 5888898776554 55
Q ss_pred HHHHhcccCCcEEEEEECCCCHHHHHHHHhc---------CCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcC
Q 013189 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELER---------GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM 312 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~---------~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~ 312 (448)
++..++ .+++++++|.....+.++..+- ..++|++|.+.++.--. -+.--...++++||||+|-..
T Consensus 438 ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~ 512 (1373)
T KOG0384|consen 438 EFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKND 512 (1373)
T ss_pred HHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCch
Confidence 666654 6788888888776665554431 37899999988754221 122234578999999999653
Q ss_pred CCHHHHHHHHHHcCCCCCCCceEEEEeccC-ChHHHHHH
Q 013189 313 GFEPQIRKIVQQMDMPPPGMRQTMLFSATF-PKEIQRLA 350 (448)
Q Consensus 313 gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~-~~~v~~l~ 350 (448)
...+...+..+.+. . -|+++.|. -..|.+|.
T Consensus 513 --~~~l~~~l~~f~~~----~-rllitgTPlQNsikEL~ 544 (1373)
T KOG0384|consen 513 --ESKLYESLNQFKMN----H-RLLITGTPLQNSLKELW 544 (1373)
T ss_pred --HHHHHHHHHHhccc----c-eeeecCCCccccHHHHH
Confidence 34555556666332 2 35667774 44555554
No 150
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.52 E-value=6e-07 Score=97.97 Aligned_cols=74 Identities=20% Similarity=0.156 Sum_probs=59.1
Q ss_pred CCCCCCCHHHHhHhhhH----hcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHH
Q 013189 163 CKYVKPTPVQRHAIPIS----IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQ 238 (448)
Q Consensus 163 ~~~~~pt~~Q~~~i~~i----~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q 238 (448)
+.|..++|.|.+.+..+ ..+.++++.+|||+|||++.+.|+|..+.+.+ ..+++++.+.|..=..|
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~----------~~~kIiy~sRThsQl~q 75 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP----------EVRKIIYASRTHSQLEQ 75 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc----------ccccEEEEcccchHHHH
Confidence 46777799999887644 46889999999999999999999998765432 12468888888888888
Q ss_pred HHHHHHHh
Q 013189 239 IHVEAKKF 246 (448)
Q Consensus 239 i~~~~~~~ 246 (448)
+.++++++
T Consensus 76 ~i~Elk~~ 83 (705)
T TIGR00604 76 ATEELRKL 83 (705)
T ss_pred HHHHHHhh
Confidence 88888874
No 151
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.48 E-value=1.3e-06 Score=95.00 Aligned_cols=63 Identities=30% Similarity=0.287 Sum_probs=49.9
Q ss_pred CCCCHHHHhHhhhHh---cC------CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHH
Q 013189 166 VKPTPVQRHAIPISI---GG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~---~g------~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 236 (448)
.++++-|.+.+..+. .+ +.++|.|+||+|||++|++|++......+ -++||=+.|+.|=
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~------------k~vVIST~T~~LQ 91 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEK------------KKLVISTATVALQ 91 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcC------------CeEEEEcCCHHHH
Confidence 378999999766543 33 67999999999999999999987554322 2489999999999
Q ss_pred HHHH
Q 013189 237 SQIH 240 (448)
Q Consensus 237 ~qi~ 240 (448)
.|+.
T Consensus 92 eQL~ 95 (697)
T PRK11747 92 EQLV 95 (697)
T ss_pred HHHH
Confidence 9985
No 152
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.45 E-value=1e-06 Score=95.68 Aligned_cols=74 Identities=28% Similarity=0.362 Sum_probs=59.4
Q ss_pred HHCCCCCCCHHHHhHhhhHh----cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHH
Q 013189 161 RRCKYVKPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (448)
Q Consensus 161 ~~~~~~~pt~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 236 (448)
..+.+.+|++.|.+.+..+. .++.+++.||||+|||++|++|++......+ ..++|.++|+.|-
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~------------~~viist~t~~lq 76 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG------------KKVIISTRTKALQ 76 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC------------CcEEEECCCHHHH
Confidence 34567789999999886443 4566999999999999999999998775543 3499999999999
Q ss_pred HHHHHHHHHh
Q 013189 237 SQIHVEAKKF 246 (448)
Q Consensus 237 ~qi~~~~~~~ 246 (448)
.|+.++...+
T Consensus 77 ~q~~~~~~~~ 86 (654)
T COG1199 77 EQLLEEDLPI 86 (654)
T ss_pred HHHHHhhcch
Confidence 9988765553
No 153
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.43 E-value=6.4e-06 Score=89.93 Aligned_cols=146 Identities=21% Similarity=0.252 Sum_probs=95.4
Q ss_pred CHHHHhHhhhHh--c--CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013189 169 TPVQRHAIPISI--G--GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 169 t~~Q~~~i~~i~--~--g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~ 244 (448)
+.+|++-+.++. + +-+-|+|-..|-|||+.-+-.+-...++.. .........-.|||||. .|+--...++.
T Consensus 977 RkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~----s~~~e~~~~PSLIVCPs-TLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 977 RKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRR----SESSEFNRLPSLIVCPS-TLTGHWKSEVK 1051 (1549)
T ss_pred HHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhc----ccchhhccCCeEEECCc-hhhhHHHHHHH
Confidence 457999988653 3 347899999999999975433333333221 11112222338999997 68888899999
Q ss_pred HhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHH
Q 013189 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 245 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
+|+.. +++....|+.......+.--+..+|+|++.+.+.+-+.. +.-...-|+||||-|-|-.. ...+.+.++.
T Consensus 1052 kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkq 1125 (1549)
T KOG0392|consen 1052 KFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQ 1125 (1549)
T ss_pred Hhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHH
Confidence 99865 667666666555545554445579999999988654432 12245678999999976442 3445555555
Q ss_pred c
Q 013189 325 M 325 (448)
Q Consensus 325 l 325 (448)
+
T Consensus 1126 L 1126 (1549)
T KOG0392|consen 1126 L 1126 (1549)
T ss_pred H
Confidence 5
No 154
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.28 E-value=0.00011 Score=73.65 Aligned_cols=252 Identities=15% Similarity=0.193 Sum_probs=143.6
Q ss_pred CCCHHHHhHhhhHh-cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 167 KPTPVQRHAIPISI-GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
.+-|+|.+-+...+ .|--+++.-..|-|||+.++- +..++... . -.||+||..-+ ....+.+.+
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla--IA~yyraE-----------w-plliVcPAsvr-ftWa~al~r 262 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQALA--IARYYRAE-----------W-PLLIVCPASVR-FTWAKALNR 262 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH--HHHHHhhc-----------C-cEEEEecHHHh-HHHHHHHHH
Confidence 45689999987655 677788999999999997653 23333221 1 17999998544 455777888
Q ss_pred hcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
|....- .+.++.++.+.... +..-..|.|.+.+.|..+-.. +.-.....||+||.|.|-+.- ....+.++..+
T Consensus 263 ~lps~~-pi~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dll 335 (689)
T KOG1000|consen 263 FLPSIH-PIFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLL 335 (689)
T ss_pred hccccc-ceEEEecccCCccc---cccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhccc-hhhhhhhhhHH
Confidence 764322 25566665543211 112246888888776543221 123447899999999775532 23344444444
Q ss_pred CCCCCCCceEEEEeccC----ChHH---------------HHHHHHhhc-CcEEEEecccc-------------------
Q 013189 326 DMPPPGMRQTMLFSATF----PKEI---------------QRLASDFLA-NYIFLAVGRVG------------------- 366 (448)
Q Consensus 326 ~~~~~~~~q~i~~SAT~----~~~v---------------~~l~~~~l~-~~~~i~v~~~~------------------- 366 (448)
.....+|++|.|. |.++ -+++..|+. ..+.+..+-.+
T Consensus 336 ----k~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRR 411 (689)
T KOG1000|consen 336 ----KVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRR 411 (689)
T ss_pred ----HHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHH
Confidence 2334588889884 2221 222222221 11111111000
Q ss_pred -------CcccceeEEEEEeccc--------------------------------------chHHHHHHHHHHHHhcCCC
Q 013189 367 -------SSTDLIVQRVEFVHES--------------------------------------DKRSHLMDLLHAQVANGVH 401 (448)
Q Consensus 367 -------~~~~~i~q~~~~~~~~--------------------------------------~k~~~L~~ll~~~~~~~~~ 401 (448)
..+.. .+.+.++... .|...+.+.|..+..- ..
T Consensus 412 lK~dvL~qLPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l-~d 489 (689)
T KOG1000|consen 412 LKADVLKQLPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFL-PD 489 (689)
T ss_pred HHHHHHhhCCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCccc-cc
Confidence 00111 2233322110 0111122222221100 12
Q ss_pred CCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHH
Q 013189 402 GKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 402 ~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~ 446 (448)
....+.+|||.-....+.+..++...++.-+-|.|..+..+|.-+
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll 534 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLL 534 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHH
Confidence 346789999999999999999999999999999999999998754
No 155
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.24 E-value=4.7e-06 Score=91.25 Aligned_cols=144 Identities=20% Similarity=0.243 Sum_probs=85.7
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH------hc---ccCCc
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK------FS---YQTGV 252 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~------~~---~~~~~ 252 (448)
..++.+.++||+|||.+|+-.|+......+ ..+.||+||+.+.-..+...+.. |. ....+
T Consensus 59 ~~n~~~~M~TGtGKT~~~~~~i~~l~~~~~-----------~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~ 127 (986)
T PRK15483 59 KANIDIKMETGTGKTYVYTRLMYELHQKYG-----------LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRI 127 (986)
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHHHHcC-----------CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCcee
Confidence 367999999999999999887765443322 24599999999988877665541 11 12234
Q ss_pred EEEEEECCC-------CHHHHHHHHhc-------CCcEEEeChhHHHHHHh-cc---------c-cc---CCCe-eEEEE
Q 013189 253 KVVVAYGGA-------PINQQLRELER-------GVDILVATPGRLVDLLE-RA---------R-VS---LQMI-RYLAL 303 (448)
Q Consensus 253 ~~~~~~gg~-------~~~~~~~~l~~-------~~~Ilv~TP~~L~~~l~-~~---------~-~~---l~~v-~~lVl 303 (448)
+..++.++. ....+.+.... .++|+|.|-+.|..-.. +. . .. +... -+||+
T Consensus 128 ~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIi 207 (986)
T PRK15483 128 ELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVII 207 (986)
T ss_pred EEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEE
Confidence 444444332 11223222221 47899999998864211 00 0 01 1111 36899
Q ss_pred ecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCCh
Q 013189 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~ 344 (448)
||.|++-..+ .....| ..+ .+.. ++.||||++.
T Consensus 208 DEPh~~~~~~--k~~~~i-~~l----npl~-~lrysAT~~~ 240 (986)
T PRK15483 208 DEPHRFPRDN--KFYQAI-EAL----KPQM-IIRFGATFPD 240 (986)
T ss_pred ECCCCCCcch--HHHHHH-Hhc----Cccc-EEEEeeecCC
Confidence 9999985422 233333 444 2222 6889999987
No 156
>COG4889 Predicted helicase [General function prediction only]
Probab=98.22 E-value=5.6e-06 Score=87.62 Aligned_cols=139 Identities=23% Similarity=0.248 Sum_probs=90.4
Q ss_pred HHHHHHHCCCCCCCHHHHhHhhhHhcC---CC-eeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcC
Q 013189 156 LNLNIRRCKYVKPTPVQRHAIPISIGG---RD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP 231 (448)
Q Consensus 156 l~~~l~~~~~~~pt~~Q~~~i~~i~~g---~d-~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 231 (448)
+..++.-+.-.+|+|.|+.||...+.+ .| -=+.+..|+|||+..+ -|...+.. .++|+|+|
T Consensus 150 ~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala~--------------~~iL~LvP 214 (1518)
T COG4889 150 LQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALAA--------------ARILFLVP 214 (1518)
T ss_pred cccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHhh--------------hheEeecc
Confidence 334444456678999999999988754 11 1223346899999854 33333322 35999999
Q ss_pred cHHHHHHHHHHHHHhcccCCcEEEEEECCCCHH-----------------------HHHHH--HhcCCcEEEeChhHHHH
Q 013189 232 TRELSSQIHVEAKKFSYQTGVKVVVAYGGAPIN-----------------------QQLRE--LERGVDILVATPGRLVD 286 (448)
Q Consensus 232 treLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~-----------------------~~~~~--l~~~~~Ilv~TP~~L~~ 286 (448)
+..|..|..++...-. ...++...+..+.... ..... -..+.-|+++|.+.|..
T Consensus 215 SIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~ 293 (1518)
T COG4889 215 SISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPR 293 (1518)
T ss_pred hHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHH
Confidence 9999999888776532 2234444444332211 11111 11245799999999987
Q ss_pred HHhcccccCCCeeEEEEecCCccC
Q 013189 287 LLERARVSLQMIRYLALDEADRML 310 (448)
Q Consensus 287 ~l~~~~~~l~~v~~lVlDEah~ll 310 (448)
.-+....-+..++++|.||||+-.
T Consensus 294 i~eAQe~G~~~fDliicDEAHRTt 317 (1518)
T COG4889 294 IKEAQEAGLDEFDLIICDEAHRTT 317 (1518)
T ss_pred HHHHHHcCCCCccEEEecchhccc
Confidence 766555668899999999999864
No 157
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.15 E-value=6.7e-06 Score=75.33 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=72.7
Q ss_pred CCCHHHHhHhhhHhcCC--CeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013189 167 KPTPVQRHAIPISIGGR--DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~--d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~ 244 (448)
++++-|++++..++... -++++++.|+|||.+. -.+...+... +.++++++||...+..+.+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~------------g~~v~~~apT~~Aa~~L~~~~~ 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA------------GKRVIGLAPTNKAAKELREKTG 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT------------T--EEEEESSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC------------CCeEEEECCcHHHHHHHHHhhC
Confidence 36789999999887543 3778899999999853 3344333322 2459999999998888666521
Q ss_pred HhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccc----cCCCeeEEEEecCCccCcCCCHHHHHH
Q 013189 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV----SLQMIRYLALDEADRMLDMGFEPQIRK 320 (448)
Q Consensus 245 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~----~l~~v~~lVlDEah~ll~~gf~~~i~~ 320 (448)
+. ..|-..++........ .+...++||||||-.+.. .++..
T Consensus 68 -------~~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~----~~~~~ 112 (196)
T PF13604_consen 68 -------IE------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS----RQLAR 112 (196)
T ss_dssp -------S-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH----HHHHH
T ss_pred -------cc------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccCH----HHHHH
Confidence 11 1121122111111111 155667999999996644 67888
Q ss_pred HHHHcCCCCCCCceEEEEecc
Q 013189 321 IVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 321 i~~~l~~~~~~~~q~i~~SAT 341 (448)
++..+. ....++|++-=+
T Consensus 113 ll~~~~---~~~~klilvGD~ 130 (196)
T PF13604_consen 113 LLRLAK---KSGAKLILVGDP 130 (196)
T ss_dssp HHHHS----T-T-EEEEEE-T
T ss_pred HHHHHH---hcCCEEEEECCc
Confidence 888873 235667776654
No 158
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.13 E-value=1.5e-05 Score=74.23 Aligned_cols=74 Identities=23% Similarity=0.301 Sum_probs=50.1
Q ss_pred CCCHHHHhHhhhHhcCCC-eeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 167 KPTPVQRHAIPISIGGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
++++-|..||..+++..+ .+|.+|.|+|||.... -++..+..... ........++||++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~----~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFK----SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchh----hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999988 9999999999996533 34444421000 00112345699999999999999999888
No 159
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.06 E-value=2.2e-05 Score=82.63 Aligned_cols=163 Identities=18% Similarity=0.228 Sum_probs=103.6
Q ss_pred CCHHHHhHhhhHh----cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013189 168 PTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 168 pt~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~ 243 (448)
+-++|.--+.++. .+-+.|+.-..|-|||.. .+..|..|.+.+. .+| -|||||.-.|-+. ..++
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~---------~gp-HLVVvPsSTleNW-lrEf 467 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN---------PGP-HLVVVPSSTLENW-LREF 467 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC---------CCC-cEEEecchhHHHH-HHHH
Confidence 4568888887653 455678899999999986 3445555554432 233 4899999998665 6678
Q ss_pred HHhcccCCcEEEEEECCCCHHHHHHHHhc----CCcEEEeChhHHHHHHh-cccccCCCeeEEEEecCCccCcCCCHHHH
Q 013189 244 KKFSYQTGVKVVVAYGGAPINQQLRELER----GVDILVATPGRLVDLLE-RARVSLQMIRYLALDEADRMLDMGFEPQI 318 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ilv~TP~~L~~~l~-~~~~~l~~v~~lVlDEah~ll~~gf~~~i 318 (448)
.+|| +.++|...||......+++..-. ..||||+|......--+ +.-+.-.++.|+|+||+|.|-.+.- +.+
T Consensus 468 ~kwC--Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~S-eRy 544 (941)
T KOG0389|consen 468 AKWC--PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTS-ERY 544 (941)
T ss_pred HHhC--CceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccch-HHH
Confidence 8886 45888888888765555543322 47999999875532111 1112245678999999998866542 333
Q ss_pred HHHHHHcCCCCCCCceEEEEeccC-ChHHHHHHH
Q 013189 319 RKIVQQMDMPPPGMRQTMLFSATF-PKEIQRLAS 351 (448)
Q Consensus 319 ~~i~~~l~~~~~~~~q~i~~SAT~-~~~v~~l~~ 351 (448)
+.++.- + ..+-|+++.|. -.++.+|+.
T Consensus 545 ~~LM~I-----~-An~RlLLTGTPLQNNL~ELiS 572 (941)
T KOG0389|consen 545 KHLMSI-----N-ANFRLLLTGTPLQNNLKELIS 572 (941)
T ss_pred HHhccc-----c-ccceEEeeCCcccccHHHHHH
Confidence 333321 2 23457778884 444555444
No 160
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.02 E-value=2.5e-05 Score=71.57 Aligned_cols=145 Identities=13% Similarity=0.193 Sum_probs=71.5
Q ss_pred CCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHH-------
Q 013189 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI------- 239 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi------- 239 (448)
-.|+-|+.++..+++..-+++.++.|||||+..+..+++.+.... .-+++|+-|..+....+
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~-----------~~kiii~Rp~v~~~~~lGflpG~~ 72 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE-----------YDKIIITRPPVEAGEDLGFLPGDL 72 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS------------SEEEEEE-S--TT----SS----
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC-----------CcEEEEEecCCCCccccccCCCCH
Confidence 457899999999997777999999999999999988888776532 23478887877642221
Q ss_pred HHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHH
Q 013189 240 HVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIR 319 (448)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~ 319 (448)
.+.+.-+.....-....+++... ...+.....|-+..+..+. + ..+.+ .+||||||..+.- .+++
T Consensus 73 ~eK~~p~~~p~~d~l~~~~~~~~----~~~~~~~~~Ie~~~~~~iR-----G-rt~~~-~~iIvDEaQN~t~----~~~k 137 (205)
T PF02562_consen 73 EEKMEPYLRPIYDALEELFGKEK----LEELIQNGKIEIEPLAFIR-----G-RTFDN-AFIIVDEAQNLTP----EELK 137 (205)
T ss_dssp -----TTTHHHHHHHTTTS-TTC----HHHHHHTTSEEEEEGGGGT-----T---B-S-EEEEE-SGGG--H----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHhChHh----HHHHhhcCeEEEEehhhhc-----C-ccccc-eEEEEecccCCCH----HHHH
Confidence 01111000000000000001111 1112122344444443321 1 12332 7899999997644 7888
Q ss_pred HHHHHcCCCCCCCceEEEEecc
Q 013189 320 KIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 320 ~i~~~l~~~~~~~~q~i~~SAT 341 (448)
.++.++ ..+.+++++.-.
T Consensus 138 ~ilTR~----g~~skii~~GD~ 155 (205)
T PF02562_consen 138 MILTRI----GEGSKIIITGDP 155 (205)
T ss_dssp HHHTTB-----TT-EEEEEE--
T ss_pred HHHccc----CCCcEEEEecCc
Confidence 888888 566777765543
No 161
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.86 E-value=0.00014 Score=81.53 Aligned_cols=136 Identities=19% Similarity=0.173 Sum_probs=88.9
Q ss_pred CeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCH
Q 013189 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPI 263 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~ 263 (448)
.-+|.--||||||+..... ..++... ...|.+|||+-+++|-.|+.+.+.++........ ...+.
T Consensus 275 ~G~IWHtqGSGKTlTm~~~--A~~l~~~---------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~ 339 (962)
T COG0610 275 GGYIWHTQGSGKTLTMFKL--ARLLLEL---------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAEST 339 (962)
T ss_pred ceEEEeecCCchHHHHHHH--HHHHHhc---------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCH
Confidence 4788888999999975433 2232221 3457899999999999999999999875432211 34445
Q ss_pred HHHHHHHhcCC-cEEEeChhHHHHHHhccc-ccC-CCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEec
Q 013189 264 NQQLRELERGV-DILVATPGRLVDLLERAR-VSL-QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 264 ~~~~~~l~~~~-~Ilv~TP~~L~~~l~~~~-~~l-~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
.+-.+.++.+. .|+|+|-+.|-..+.... ..+ ..=-.||+||||+-- .|+ .-..+-..+ + +...++||.
T Consensus 340 ~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ-~G~--~~~~~~~~~----~-~a~~~gFTG 411 (962)
T COG0610 340 SELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ-YGE--LAKLLKKAL----K-KAIFIGFTG 411 (962)
T ss_pred HHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc-ccH--HHHHHHHHh----c-cceEEEeeC
Confidence 55555666543 799999999988886541 112 222358899999742 232 222223333 2 256899999
Q ss_pred cC
Q 013189 341 TF 342 (448)
Q Consensus 341 T~ 342 (448)
|.
T Consensus 412 TP 413 (962)
T COG0610 412 TP 413 (962)
T ss_pred Cc
Confidence 96
No 162
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.85 E-value=5.2e-05 Score=75.92 Aligned_cols=125 Identities=22% Similarity=0.302 Sum_probs=83.6
Q ss_pred CCHHHHhHhhhHhcCCC-----eeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013189 168 PTPVQRHAIPISIGGRD-----LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 168 pt~~Q~~~i~~i~~g~d-----~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~ 242 (448)
+-|+|++.+-.+....+ -++.-..|.|||...+--+|..+- +-..||++|+.+|. |..++
T Consensus 185 LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~--------------ra~tLVvaP~VAlm-QW~nE 249 (791)
T KOG1002|consen 185 LLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVD--------------RAPTLVVAPTVALM-QWKNE 249 (791)
T ss_pred chhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccc--------------cCCeeEEccHHHHH-HHHHH
Confidence 56789998877664433 456678999999975444443111 11289999999985 77888
Q ss_pred HHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhccc-------------ccCCCee--EEEEecCC
Q 013189 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR-------------VSLQMIR--YLALDEAD 307 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~-------------~~l~~v~--~lVlDEah 307 (448)
+..+.. -..++.+.+| .......+.+. +.|++++|...+....++.. ..|.+++ -+||||||
T Consensus 250 I~~~T~-gslkv~~YhG-~~R~~nikel~-~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH 326 (791)
T KOG1002|consen 250 IERHTS-GSLKVYIYHG-AKRDKNIKELM-NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAH 326 (791)
T ss_pred HHHhcc-CceEEEEEec-ccccCCHHHhh-cCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhc
Confidence 888865 3456666555 44444444544 48999999999887775421 1244454 48999999
Q ss_pred ccC
Q 013189 308 RML 310 (448)
Q Consensus 308 ~ll 310 (448)
-+-
T Consensus 327 ~IK 329 (791)
T KOG1002|consen 327 NIK 329 (791)
T ss_pred ccc
Confidence 764
No 163
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.85 E-value=5.5e-05 Score=71.27 Aligned_cols=86 Identities=26% Similarity=0.388 Sum_probs=70.9
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCC-CHHHHHHHHhc-CCcEEEeChhHHHHHHhcccccCCCe
Q 013189 221 TVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGA-PINQQLRELER-GVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 221 ~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~-~~~~~~~~l~~-~~~Ilv~TP~~L~~~l~~~~~~l~~v 298 (448)
...|.+|||+..=.-|..+...++.|.. -+..+..++.-. .+.+|...+.+ .++|.||||+||..+++.+.+.++.+
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 4579999999999889999999988741 123455556554 77888888885 58999999999999999999999999
Q ss_pred eEEEEecCC
Q 013189 299 RYLALDEAD 307 (448)
Q Consensus 299 ~~lVlDEah 307 (448)
.+||||--|
T Consensus 203 ~~ivlD~s~ 211 (252)
T PF14617_consen 203 KRIVLDWSY 211 (252)
T ss_pred eEEEEcCCc
Confidence 999999755
No 164
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.84 E-value=0.00013 Score=70.09 Aligned_cols=174 Identities=16% Similarity=0.182 Sum_probs=107.3
Q ss_pred cCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHh----------cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCC
Q 013189 149 EIDLGEALNLNIRRCKYVKPTPVQRHAIPISI----------GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 218 (448)
Q Consensus 149 ~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~----------~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~ 218 (448)
.+.|++.+... | .++..|-+++-... ...-.++--.||.||--...-.|++.+++..
T Consensus 25 ~~~lp~~~~~~----g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr------- 91 (303)
T PF13872_consen 25 RLHLPEEVIDS----G--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR------- 91 (303)
T ss_pred ccCCCHHHHhc----c--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC-------
Confidence 34566654431 2 46778888776543 1245788889999998876666777766542
Q ss_pred CCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcc---cccC
Q 013189 219 SRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA---RVSL 295 (448)
Q Consensus 219 ~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~---~~~l 295 (448)
.++|.++.+-.|-.+....++.+... .+.+..+..- ... ....+ .-.||++|.-.|...-... ...+
T Consensus 92 -----~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~-~~~-~~~~~--~~GvlF~TYs~L~~~~~~~~~~~sRl 161 (303)
T PF13872_consen 92 -----KRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKF-KYG-DIIRL--KEGVLFSTYSTLISESQSGGKYRSRL 161 (303)
T ss_pred -----CceEEEECChhhhhHHHHHHHHhCCC-cccceechhh-ccC-cCCCC--CCCccchhHHHHHhHHhccCCccchH
Confidence 35899999999999999999988643 3333332210 000 00111 2469999998887664321 1011
Q ss_pred ---------CCeeEEEEecCCccCcCCC--------HHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHH
Q 013189 296 ---------QMIRYLALDEADRMLDMGF--------EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLA 350 (448)
Q Consensus 296 ---------~~v~~lVlDEah~ll~~gf--------~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~ 350 (448)
..=.+|||||||.+-...- ...+..+-+.+ |..+ ++.+|||...+..+|+
T Consensus 162 ~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L----P~AR-vvY~SATgasep~Nma 228 (303)
T PF13872_consen 162 DQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL----PNAR-VVYASATGASEPRNMA 228 (303)
T ss_pred HHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC----CCCc-EEEecccccCCCceee
Confidence 1113799999999865432 12344444455 5555 9999999877766543
No 165
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.78 E-value=0.00015 Score=73.85 Aligned_cols=203 Identities=13% Similarity=0.056 Sum_probs=118.8
Q ss_pred CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCC
Q 013189 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAP 262 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~ 262 (448)
+-++-++||.||||.-+ |+++...+ ..++--|.|-||..+++.+.+. ++.+-+++|...
T Consensus 192 kIi~H~GPTNSGKTy~A----Lqrl~~ak-------------sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~ 250 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRA----LQRLKSAK-------------SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEER 250 (700)
T ss_pred eEEEEeCCCCCchhHHH----HHHHhhhc-------------cceecchHHHHHHHHHHHhhhc----CCCcccccccee
Confidence 44788999999999864 45554332 2789999999999999999985 566666666432
Q ss_pred HHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccC
Q 013189 263 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 263 ~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
...... .+-++.+-||-+++- --..+++.||||+..|-+....-.+.+-+--+. .++. -+|.
T Consensus 251 ~~~~~~--~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~---AdEi--HLCG--- 312 (700)
T KOG0953|consen 251 RFVLDN--GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLA---ADEI--HLCG--- 312 (700)
T ss_pred eecCCC--CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhh---hhhh--hccC---
Confidence 211110 112456667765431 124578899999999987653334433333221 1111 1111
Q ss_pred ChHHHHHHHHhhcC---cEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHH
Q 013189 343 PKEIQRLASDFLAN---YIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADA 419 (448)
Q Consensus 343 ~~~v~~l~~~~l~~---~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~ 419 (448)
.+.+..++++.+.. .+.+ ..|+...+..-.+.++.-+.... .+-+ |.|=+++..-.
T Consensus 313 epsvldlV~~i~k~TGd~vev-------------~~YeRl~pL~v~~~~~~sl~nlk-------~GDC-vV~FSkk~I~~ 371 (700)
T KOG0953|consen 313 EPSVLDLVRKILKMTGDDVEV-------------REYERLSPLVVEETALGSLSNLK-------PGDC-VVAFSKKDIFT 371 (700)
T ss_pred CchHHHHHHHHHhhcCCeeEE-------------EeecccCcceehhhhhhhhccCC-------CCCe-EEEeehhhHHH
Confidence 24455566665432 1211 12222222111112333333322 2223 44667888888
Q ss_pred HHHHHHHCCCC-eEEecCCCCHHHHHH
Q 013189 420 LEHWLYMNGFP-ATTIHGDRTQQRTSI 445 (448)
Q Consensus 420 l~~~L~~~g~~-~~~iHg~~~q~eR~~ 445 (448)
+...+...|.. |.+|.|.++++.|.+
T Consensus 372 ~k~kIE~~g~~k~aVIYGsLPPeTr~a 398 (700)
T KOG0953|consen 372 VKKKIEKAGNHKCAVIYGSLPPETRLA 398 (700)
T ss_pred HHHHHHHhcCcceEEEecCCCCchhHH
Confidence 99999888766 999999999998875
No 166
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.77 E-value=0.00078 Score=67.53 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=68.4
Q ss_pred CeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCH
Q 013189 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPI 263 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~ 263 (448)
-++|.+..|||||+..+ -++..+... ..+..++++++...|...+...+.+-.. .
T Consensus 3 v~~I~G~aGTGKTvla~-~l~~~l~~~----------~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------~---- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLAL-NLAKELQNS----------EEGKKVLYLCGNHPLRNKLREQLAKKYN----------P---- 57 (352)
T ss_pred EEEEEecCCcCHHHHHH-HHHHHhhcc----------ccCCceEEEEecchHHHHHHHHHhhhcc----------c----
Confidence 47899999999999743 333333111 1234589999999999988888876320 0
Q ss_pred HHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCC-------CHHHHHHHHHH
Q 013189 264 NQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG-------FEPQIRKIVQQ 324 (448)
Q Consensus 264 ~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~g-------f~~~i~~i~~~ 324 (448)
......+..|..+...+..........++|||||||+|.+.+ ..++|..|+..
T Consensus 58 --------~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 --------KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --------chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001233444444444433223456789999999999998731 34566666655
No 167
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.73 E-value=0.00034 Score=74.38 Aligned_cols=143 Identities=16% Similarity=0.211 Sum_probs=86.9
Q ss_pred CHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc
Q 013189 169 TPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY 248 (448)
Q Consensus 169 t~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~ 248 (448)
...|+.|+..++..+-+++.++.|+|||... ..++..+...... ...+++++++||-.-|..+.+.+.....
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~-------~~~~~I~l~APTGkAA~rL~e~~~~~~~ 218 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPK-------QGKLRIALAAPTGKAAARLAESLRKAVK 218 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccc-------cCCCcEEEECCcHHHHHHHHHHHHhhhc
Confidence 3799999999999999999999999999863 2333333322110 0124699999999988888777655322
Q ss_pred cCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhc------ccccCCCeeEEEEecCCccCcCCCHHHHHHHH
Q 013189 249 QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER------ARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322 (448)
Q Consensus 249 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~------~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~ 322 (448)
..... . .+.....+-..|-.+|+..... ...+...+++||||||-++ + .+.+..++
T Consensus 219 ~l~~~----------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv-d---~~l~~~ll 280 (586)
T TIGR01447 219 NLAAA----------E----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV-D---LPLMAKLL 280 (586)
T ss_pred ccccc----------h----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC-C---HHHHHHHH
Confidence 11110 0 0000111223444444333211 1122346799999999844 4 36777888
Q ss_pred HHcCCCCCCCceEEEEecc
Q 013189 323 QQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 323 ~~l~~~~~~~~q~i~~SAT 341 (448)
..+ +...++|++.=.
T Consensus 281 ~al----~~~~rlIlvGD~ 295 (586)
T TIGR01447 281 KAL----PPNTKLILLGDK 295 (586)
T ss_pred Hhc----CCCCEEEEECCh
Confidence 877 566778776544
No 168
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.72 E-value=0.00025 Score=75.64 Aligned_cols=142 Identities=15% Similarity=0.200 Sum_probs=86.3
Q ss_pred CHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc
Q 013189 169 TPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY 248 (448)
Q Consensus 169 t~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~ 248 (448)
.+.|+.|+-..+..+-+++.++.|+|||... .-++..+.+... .....+++++||..-|..+.+.+.....
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~~--------~~~~~i~l~APTgkAA~rL~e~~~~~~~ 224 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLAD--------GERCRIRLAAPTGKAAARLTESLGKALR 224 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhcC--------CCCcEEEEECCcHHHHHHHHHHHHhhhh
Confidence 5899999999999999999999999999863 223333332110 1124688899999999888887765332
Q ss_pred cCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHh------cccccCCCeeEEEEecCCccCcCCCHHHHHHHH
Q 013189 249 QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLE------RARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322 (448)
Q Consensus 249 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~------~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~ 322 (448)
...+. .. +......-..|-.+|+.... .+..+.-.+++||||||-++ + .+.+..++
T Consensus 225 ~~~~~-----------~~---~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll 286 (615)
T PRK10875 225 QLPLT-----------DE---QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLI 286 (615)
T ss_pred ccccc-----------hh---hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHH
Confidence 21110 00 00011112233333333211 11122345689999999844 4 36777788
Q ss_pred HHcCCCCCCCceEEEEecc
Q 013189 323 QQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 323 ~~l~~~~~~~~q~i~~SAT 341 (448)
..+ +...++|++.=.
T Consensus 287 ~al----~~~~rlIlvGD~ 301 (615)
T PRK10875 287 DAL----PPHARVIFLGDR 301 (615)
T ss_pred Hhc----ccCCEEEEecch
Confidence 877 666778877654
No 169
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.72 E-value=0.00015 Score=79.13 Aligned_cols=153 Identities=18% Similarity=0.274 Sum_probs=100.4
Q ss_pred CCHHHHhHhhhHh----cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013189 168 PTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 168 pt~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~ 243 (448)
++.+|+.-+.++. ++-|-|+.-..|-|||.. .|.+|.++..+. .+-.--|||+||--+.+. .=++
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACee---------gnWGPHLIVVpTsviLnW-EMEl 684 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEE---------GNWGPHLIVVPTSVILNW-EMEL 684 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhcc---------cCCCCceEEeechhhhhh-hHHH
Confidence 3457888887654 345778889999999987 466677665443 111224889999876544 6678
Q ss_pred HHhcccCCcEEEEEECCCCHHHHHHHHh---cCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHH
Q 013189 244 KKFSYQTGVKVVVAYGGAPINQQLRELE---RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRK 320 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~ 320 (448)
++|| .++++...||...-....++-- +..||.|++...+..-+. .+.-++.+||||||||.+-. |..+--.
T Consensus 685 KRwc--PglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~--AFkrkrWqyLvLDEaqnIKn--fksqrWQ 758 (1958)
T KOG0391|consen 685 KRWC--PGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNIKN--FKSQRWQ 758 (1958)
T ss_pred hhhC--CcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH--HHHhhccceeehhhhhhhcc--hhHHHHH
Confidence 8886 5789999888755433332211 126899999888876554 23346789999999998865 3443333
Q ss_pred HHHHcCCCCCCCceEEEEeccC
Q 013189 321 IVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 321 i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
.+-.+ . ..|-++++.|.
T Consensus 759 Allnf----n-sqrRLLLtgTP 775 (1958)
T KOG0391|consen 759 ALLNF----N-SQRRLLLTGTP 775 (1958)
T ss_pred HHhcc----c-hhheeeecCCc
Confidence 33333 1 23457777774
No 170
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.66 E-value=0.00032 Score=75.02 Aligned_cols=141 Identities=22% Similarity=0.266 Sum_probs=90.1
Q ss_pred CCCHHHHhHhhhHh----cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcc--------cC-------C-----------
Q 013189 167 KPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYV--------QR-------P----------- 216 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~--------~~-------~----------- 216 (448)
.|++.|...+..++ ...+.++.+|||+|||++.+-..|.+....... .. +
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 58899988776554 467899999999999998776666554432200 00 0
Q ss_pred ---CCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCC--------------------------------
Q 013189 217 ---RGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGA-------------------------------- 261 (448)
Q Consensus 217 ---~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~-------------------------------- 261 (448)
......-|++++-+-|-.-..|+.+++++..+. ++.+++-.-.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f 178 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHF 178 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccc
Confidence 000123578888888888888999999998765 3333322110
Q ss_pred ------------------CHHH--------------HHHHHhcCCcEEEeChhHHHHHHhccc--ccCCCeeEEEEecCC
Q 013189 262 ------------------PINQ--------------QLRELERGVDILVATPGRLVDLLERAR--VSLQMIRYLALDEAD 307 (448)
Q Consensus 262 ------------------~~~~--------------~~~~l~~~~~Ilv~TP~~L~~~l~~~~--~~l~~v~~lVlDEah 307 (448)
++.+ ..+.+...+||++|-...|+|-.-+.. ++|++ ..|||||||
T Consensus 179 ~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAH 257 (945)
T KOG1132|consen 179 YKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAH 257 (945)
T ss_pred cccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccc
Confidence 0000 012222345899999999988765543 55543 579999999
Q ss_pred ccC
Q 013189 308 RML 310 (448)
Q Consensus 308 ~ll 310 (448)
.|-
T Consensus 258 NiE 260 (945)
T KOG1132|consen 258 NIE 260 (945)
T ss_pred cHH
Confidence 874
No 171
>PRK10536 hypothetical protein; Provisional
Probab=97.65 E-value=0.0009 Score=63.22 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=43.7
Q ss_pred CCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHH
Q 013189 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRE 234 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptre 234 (448)
++..-+..|...+..+.+..-+++.+++|||||+..+...++.++... .-+++|.=|+.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-----------~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-----------VDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-----------eeEEEEeCCCCC
Confidence 444567889999988888778999999999999987776666554322 224666667655
No 172
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.64 E-value=0.00037 Score=72.31 Aligned_cols=85 Identities=20% Similarity=0.140 Sum_probs=66.8
Q ss_pred HHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHH
Q 013189 158 LNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSS 237 (448)
Q Consensus 158 ~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~ 237 (448)
+.+...++.+++.-|..|+..++...=.+|++|.|+|||..-.-.+++.+.+. ...+||++|+-.-+.
T Consensus 401 ~~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~------------~~~VLvcApSNiAVD 468 (935)
T KOG1802|consen 401 RRFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQH------------AGPVLVCAPSNIAVD 468 (935)
T ss_pred hhhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhc------------CCceEEEcccchhHH
Confidence 35556678889999999999999999999999999999998665555433321 234999999999999
Q ss_pred HHHHHHHHhcccCCcEEEEEE
Q 013189 238 QIHVEAKKFSYQTGVKVVVAY 258 (448)
Q Consensus 238 qi~~~~~~~~~~~~~~~~~~~ 258 (448)
|+++.+.+ ++++|+-+.
T Consensus 469 qLaeKIh~----tgLKVvRl~ 485 (935)
T KOG1802|consen 469 QLAEKIHK----TGLKVVRLC 485 (935)
T ss_pred HHHHHHHh----cCceEeeee
Confidence 99998887 356665443
No 173
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.64 E-value=0.00011 Score=78.10 Aligned_cols=144 Identities=16% Similarity=0.166 Sum_probs=78.5
Q ss_pred CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH-------HH-HHhcccCCcEE
Q 013189 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV-------EA-KKFSYQTGVKV 254 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~-------~~-~~~~~~~~~~~ 254 (448)
-++=|.+.||+|||.||+-.++..-.+-+ -.+-||++||.+.-.-++. .+ +.....+.++.
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~YG-----------~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~ 143 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKYG-----------LFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLES 143 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHhC-----------ceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeE
Confidence 46789999999999999877664322221 1347999999886544322 22 22222223333
Q ss_pred EEEECCCCHHHHHHHHhcCCcEEEeChhHHHHH------Hhccccc--------------CCCe-eEEEEecCCccCcCC
Q 013189 255 VVAYGGAPINQQLRELERGVDILVATPGRLVDL------LERARVS--------------LQMI-RYLALDEADRMLDMG 313 (448)
Q Consensus 255 ~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~------l~~~~~~--------------l~~v-~~lVlDEah~ll~~g 313 (448)
++. ........-.-...|.||+.|-..+..- +...... +..+ -+|||||-|+|...
T Consensus 144 ~i~--~~~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~- 220 (985)
T COG3587 144 YIY--DEDIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD- 220 (985)
T ss_pred Eee--chHHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc-
Confidence 332 2222222222234588888886655321 1111100 1111 36899999999763
Q ss_pred CHHHHHHHHHHcCCCCCCCceEEEEeccCChHHH
Q 013189 314 FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 314 f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
...+..|. .+ . ..-++=|+||++++..
T Consensus 221 -~k~~~~i~-~l----~-pl~ilRfgATfkd~y~ 247 (985)
T COG3587 221 -DKTYGAIK-QL----N-PLLILRFGATFKDEYN 247 (985)
T ss_pred -hHHHHHHH-hh----C-ceEEEEecccchhhhc
Confidence 12222222 22 1 1237889999998876
No 174
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.64 E-value=0.001 Score=61.64 Aligned_cols=150 Identities=21% Similarity=0.316 Sum_probs=92.2
Q ss_pred cccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhc---CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCC
Q 013189 147 FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIG---GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 147 f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~---g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
|....-++.|+--+.. + --.++.|.+....+.+ +.|.+.+.-+|.|||.+ ++|++..++.++.
T Consensus 5 w~p~~~P~wLl~E~e~-~-iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~----------- 70 (229)
T PF12340_consen 5 WDPMEYPDWLLFEIES-N-ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGS----------- 70 (229)
T ss_pred CCchhChHHHHHHHHc-C-ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCC-----------
Confidence 4444445555444432 2 2578999998887764 68999999999999998 6899888876531
Q ss_pred ceEEEEcCcHHHHHHHHHHHHH-hcccCCcEEEEE--ECCCCHH----HHHH----HHhcCCcEEEeChhHHHHHHhc--
Q 013189 224 PLALILAPTRELSSQIHVEAKK-FSYQTGVKVVVA--YGGAPIN----QQLR----ELERGVDILVATPGRLVDLLER-- 290 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~-~~~~~~~~~~~~--~gg~~~~----~~~~----~l~~~~~Ilv~TP~~L~~~l~~-- 290 (448)
..+.+++|. .|..|.+..+.. |+.-.+-++..+ .-..... .... ...+.-.|+++||+.++.+.-.
T Consensus 71 ~LvrviVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~l 149 (229)
T PF12340_consen 71 RLVRVIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGL 149 (229)
T ss_pred cEEEEEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHH
Confidence 236666664 688898888864 443333344332 1122211 1111 2223347999999999765321
Q ss_pred -----ccc-----------cCCCeeEEEEecCCccCc
Q 013189 291 -----ARV-----------SLQMIRYLALDEADRMLD 311 (448)
Q Consensus 291 -----~~~-----------~l~~v~~lVlDEah~ll~ 311 (448)
+.. .+.....=|+||+|..|.
T Consensus 150 e~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 150 ERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 110 133445569999998765
No 175
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.62 E-value=0.00021 Score=73.65 Aligned_cols=65 Identities=22% Similarity=0.320 Sum_probs=51.1
Q ss_pred CCCHHHHhHhhhHhcCCC-eeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013189 167 KPTPVQRHAIPISIGGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~ 244 (448)
.+.+-|+.|+....+.++ .++.+|.|+|||.....-|.+.+ ..+ -++||.+||.+-+.-|.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlv-k~~------------k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLV-KQK------------KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHH-HcC------------CeEEEEcCchHHHHHHHHHhc
Confidence 467889999999888877 67999999999998655554444 322 359999999999999988644
No 176
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.61 E-value=0.00076 Score=75.35 Aligned_cols=125 Identities=17% Similarity=0.100 Sum_probs=76.7
Q ss_pred CCCCHHHHhHhhhHhcCCC-eeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~ 244 (448)
..+++-|+.++..++.+++ +++.+..|+|||++ +-.++. +... .+.+++.++||-.-+..+.+
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~-~~e~-----------~G~~V~~~ApTGkAA~~L~e--- 408 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVARE-AWEA-----------AGYEVRGAALSGIAAENLEG--- 408 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHH-HHHH-----------cCCeEEEecCcHHHHHHHhh---
Confidence 3689999999999988665 78999999999986 333333 3221 13468999999876655432
Q ss_pred HhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHH
Q 013189 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 245 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
..++.. .|-.+|+.-...+...+...++||||||-++-. .++..++..
T Consensus 409 ----~tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~ 456 (988)
T PRK13889 409 ----GSGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSH 456 (988)
T ss_pred ----ccCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHh
Confidence 112211 121222211222333466778999999995533 456666655
Q ss_pred cCCCCCCCceEEEEecc
Q 013189 325 MDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 325 l~~~~~~~~q~i~~SAT 341 (448)
.. +...++|++.=+
T Consensus 457 a~---~~garvVLVGD~ 470 (988)
T PRK13889 457 AA---DAGAKVVLVGDP 470 (988)
T ss_pred hh---hCCCEEEEECCH
Confidence 42 334667776654
No 177
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.57 E-value=7.9e-05 Score=77.60 Aligned_cols=136 Identities=21% Similarity=0.236 Sum_probs=83.1
Q ss_pred CHHHHhHhhhHhc-----CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013189 169 TPVQRHAIPISIG-----GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 169 t~~Q~~~i~~i~~-----g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~ 243 (448)
-|.|+.++.++.- ..--|+....|-|||+...--|++.-....... . ...... .+|||||-. |+.|...++
T Consensus 327 mpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~-~-~~~~a~-~TLII~PaS-li~qW~~Ev 402 (901)
T KOG4439|consen 327 MPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKARE-K-KGESAS-KTLIICPAS-LIHQWEAEV 402 (901)
T ss_pred chhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhc-c-cccccC-CeEEeCcHH-HHHHHHHHH
Confidence 4579998887762 234677778999999975444443322221111 1 111122 499999985 566777777
Q ss_pred HHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHH----HHhccc--ccCCCe--eEEEEecCCcc
Q 013189 244 KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVD----LLERAR--VSLQMI--RYLALDEADRM 309 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~----~l~~~~--~~l~~v--~~lVlDEah~l 309 (448)
.+-....-++|.+.||........+.+. ..||||+|..-+.. -++.++ -.|..| ..|||||||.+
T Consensus 403 ~~rl~~n~LsV~~~HG~n~r~i~~~~L~-~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~I 475 (901)
T KOG4439|consen 403 ARRLEQNALSVYLYHGPNKREISAKELR-KYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNI 475 (901)
T ss_pred HHHHhhcceEEEEecCCccccCCHHHHh-hcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhh
Confidence 6655566788888887764333334443 48999999876654 122111 123333 56999999965
No 178
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.52 E-value=0.002 Score=69.65 Aligned_cols=127 Identities=17% Similarity=0.146 Sum_probs=91.6
Q ss_pred CHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc
Q 013189 169 TPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY 248 (448)
Q Consensus 169 t~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~ 248 (448)
+|+-.+.+-.+.....-++-..||=|||++..+|+.-..+..+ .+.++...--||.--.+.+.++..
T Consensus 80 ~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gk-------------gVhvVTvNdYLA~RDae~m~~l~~ 146 (822)
T COG0653 80 RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGK-------------GVHVVTVNDYLARRDAEWMGPLYE 146 (822)
T ss_pred ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCC-------------CcEEeeehHHhhhhCHHHHHHHHH
Confidence 3333444445555566789999999999999999875544322 277788888899888999999888
Q ss_pred cCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHH-HHHHhcc------cccCCCeeEEEEecCCccC
Q 013189 249 QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML 310 (448)
Q Consensus 249 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L-~~~l~~~------~~~l~~v~~lVlDEah~ll 310 (448)
..++.+.+...+.+..++.... .|||.++|-..| .|+++.+ ........|.|+||+|-++
T Consensus 147 ~LGlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 147 FLGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred HcCCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 8999999999888765544433 489999998877 3333221 1124467889999999764
No 179
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=97.50 E-value=0.00066 Score=57.01 Aligned_cols=60 Identities=28% Similarity=0.453 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 383 ~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.|...+.+++..... ...++||||+++..++.+++.|...++++..+||+++..+|..++
T Consensus 12 ~k~~~i~~~i~~~~~-----~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (131)
T cd00079 12 EKLEALLELLKEHLK-----KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVL 71 (131)
T ss_pred HHHHHHHHHHHhccc-----CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHH
Confidence 678888888776532 267899999999999999999999999999999999999998764
No 180
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.47 E-value=0.00099 Score=71.77 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=52.3
Q ss_pred CCCCHHHHhHhhhHhcC-CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~ 244 (448)
..+++.|..|+..++.. ..++|.+|+|+|||.... -++..+... +.++||++||..-+.++.+.+.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~-~ii~~~~~~------------g~~VLv~a~sn~Avd~l~e~l~ 222 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLV-ELIRQLVKR------------GLRVLVTAPSNIAVDNLLERLA 222 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHH-HHHHHHHHc------------CCCEEEEcCcHHHHHHHHHHHH
Confidence 35789999999988876 568899999999997643 334444332 2369999999999999999887
Q ss_pred H
Q 013189 245 K 245 (448)
Q Consensus 245 ~ 245 (448)
+
T Consensus 223 ~ 223 (637)
T TIGR00376 223 L 223 (637)
T ss_pred h
Confidence 6
No 181
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.44 E-value=0.0013 Score=71.89 Aligned_cols=131 Identities=19% Similarity=0.170 Sum_probs=77.1
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
..+++-|+.|+..+..++-+++.+..|+|||.+. -.++..+...+ ....+++++||-.-|..+.+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~----------~~~~v~l~ApTg~AA~~L~e~~-- 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG----------GLLPVGLAAPTGRAAKRLGEVT-- 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC----------CCceEEEEeCchHHHHHHHHhc--
Confidence 4789999999999988889999999999999853 23333332211 0134788899988876554321
Q ss_pred hcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+... ..+. +.+... ++..... ..-.....++||||||+++-. ..+..++..+
T Consensus 389 -----g~~a------~Tih---~lL~~~-------~~~~~~~---~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~ 440 (720)
T TIGR01448 389 -----GLTA------STIH---RLLGYG-------PDTFRHN---HLEDPIDCDLLIVDESSMMDT----WLALSLLAAL 440 (720)
T ss_pred -----CCcc------ccHH---HHhhcc-------CCccchh---hhhccccCCEEEEeccccCCH----HHHHHHHHhC
Confidence 1110 1111 111111 1100000 001134578999999996633 5666777766
Q ss_pred CCCCCCCceEEEEecc
Q 013189 326 DMPPPGMRQTMLFSAT 341 (448)
Q Consensus 326 ~~~~~~~~q~i~~SAT 341 (448)
+...++|++.=+
T Consensus 441 ----~~~~rlilvGD~ 452 (720)
T TIGR01448 441 ----PDHARLLLVGDT 452 (720)
T ss_pred ----CCCCEEEEECcc
Confidence 456777776544
No 182
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.41 E-value=0.0007 Score=73.33 Aligned_cols=128 Identities=22% Similarity=0.338 Sum_probs=81.4
Q ss_pred CCCHHHHhHhhhHh----cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013189 167 KPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~ 242 (448)
++.++|.+-+.++. ++-+-|..-.+|-|||.. .+.++..++.... ..+| -|||+|+-.|.+. ..+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~--------~~GP-~LvivPlstL~NW-~~E 462 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQ--------MQGP-FLIIVPLSTLVNW-SSE 462 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHcc--------cCCC-eEEeccccccCCc-hhh
Confidence 57788998887654 234578888999999987 4555666665432 2344 4899999999876 445
Q ss_pred HHHhcccCCcEEEEEECCCCHHH---HHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccC
Q 013189 243 AKKFSYQTGVKVVVAYGGAPINQ---QLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRML 310 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll 310 (448)
+.+++. .+..+. |.|.+-.. +........+||++|.+.+.. ++..+.--+..|+||||.|+|-
T Consensus 463 f~kWaP--Sv~~i~-YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmK 528 (1157)
T KOG0386|consen 463 FPKWAP--SVQKIQ-YKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMK 528 (1157)
T ss_pred cccccc--ceeeee-eeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeeccccccc
Confidence 555532 343333 55544211 111112358999999887765 2223334456789999999984
No 183
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.35 E-value=0.00036 Score=74.56 Aligned_cols=143 Identities=17% Similarity=0.161 Sum_probs=89.9
Q ss_pred hHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-----cccCCc
Q 013189 178 ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF-----SYQTGV 252 (448)
Q Consensus 178 ~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~-----~~~~~~ 252 (448)
.+....-+++-..||+|||..+.--||..++.... ....-+.+..|+|..++.+.+.+.+- +...+.
T Consensus 389 ~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~--------g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy 460 (1282)
T KOG0921|consen 389 AVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN--------GASFNAVVSQPRRISAISLAERVANERGEEVGETCGY 460 (1282)
T ss_pred HHhcCceeeEeecccccchhHHHHHHHHHHhhccc--------cccccceeccccccchHHHHHHHHHhhHHhhcccccc
Confidence 33445568899999999999999999998887543 33344888889999999988876542 111111
Q ss_pred EEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCC
Q 013189 253 KVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGM 332 (448)
Q Consensus 253 ~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~ 332 (448)
++.. ....+.. --.|++||-|-|+..++.. +..+.++++||+|..--.+ +-+..++..+... ..+
T Consensus 461 ~vRf-~Sa~prp--------yg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~--dfll~~lr~m~~t-y~d 525 (1282)
T KOG0921|consen 461 NVRF-DSATPRP--------YGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDT--DFVLIVLREMIST-YRD 525 (1282)
T ss_pred cccc-ccccccc--------ccceeeeccchhhhhhhhc---ccccccccchhhhhhccch--HHHHHHHHhhhcc-chh
Confidence 1110 1111111 1269999999999999876 5678899999999653222 2233333333222 223
Q ss_pred ceEEEEeccCC
Q 013189 333 RQTMLFSATFP 343 (448)
Q Consensus 333 ~q~i~~SAT~~ 343 (448)
..++++|||+.
T Consensus 526 l~v~lmsatId 536 (1282)
T KOG0921|consen 526 LRVVLMSATID 536 (1282)
T ss_pred hhhhhhhcccc
Confidence 44555666654
No 184
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.22 E-value=0.00051 Score=75.46 Aligned_cols=127 Identities=20% Similarity=0.165 Sum_probs=88.0
Q ss_pred CCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013189 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 168 pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~ 247 (448)
|.++|--. .+.-.+--|+.+.||=|||++..+|++-..+... -|-||+..--||.-=.+.+..+.
T Consensus 170 ~yDVQliG--givLh~G~IAEM~TGEGKTLvAtlp~yLnAL~Gk-------------gVHvVTVNDYLA~RDaewmgply 234 (1112)
T PRK12901 170 HYDVQLIG--GVVLHQGKIAEMATGEGKTLVATLPVYLNALTGN-------------GVHVVTVNDYLAKRDSEWMGPLY 234 (1112)
T ss_pred ccchHHhh--hhhhcCCceeeecCCCCchhHHHHHHHHHHHcCC-------------CcEEEEechhhhhccHHHHHHHH
Confidence 44555443 3333455689999999999999999987666532 16677777788887777888877
Q ss_pred ccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHH-HHHHhccc------ccCCCeeEEEEecCCccC
Q 013189 248 YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQMIRYLALDEADRML 310 (448)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L-~~~l~~~~------~~l~~v~~lVlDEah~ll 310 (448)
...|+.+.++..... ..+.+.-.-.|||.++|..-| .|+|+.+- .....+.|.||||+|-+|
T Consensus 235 ~fLGLsvg~i~~~~~-~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 235 EFHGLSVDCIDKHQP-NSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred HHhCCceeecCCCCC-CHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 788999988755222 223344445699999998776 44443321 224568899999999764
No 185
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.15 E-value=0.0014 Score=55.25 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=12.8
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
+++.+++.+++|+|||.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ----EEEEE-TTSSHHHHH
T ss_pred CCcccEEEcCCCCCHHHHH
Confidence 3456899999999999964
No 186
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.08 E-value=0.0017 Score=65.30 Aligned_cols=60 Identities=23% Similarity=0.255 Sum_probs=43.0
Q ss_pred CCCHHHHhHhhhH------hcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHH
Q 013189 167 KPTPVQRHAIPIS------IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI 239 (448)
Q Consensus 167 ~pt~~Q~~~i~~i------~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi 239 (448)
++++-|+.++..+ ..+..+++.++-|+|||..+ -.|...+.. .+..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~--~~i~~~~~~-----------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI--KAIIDYLRS-----------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH--HHHHHHhcc-----------ccceEEEecchHHHHHhc
Confidence 3577888888877 56788999999999999953 333333322 234589999998876654
No 187
>PF13245 AAA_19: Part of AAA domain
Probab=97.08 E-value=0.0014 Score=50.12 Aligned_cols=60 Identities=22% Similarity=0.383 Sum_probs=38.8
Q ss_pred HhhhHhcCCC-eeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013189 175 AIPISIGGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 175 ~i~~i~~g~d-~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~ 243 (448)
+|...+.+.. ++|.++.|||||...+ -++..+..... .. +.++||++||+..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~-~~i~~l~~~~~-------~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLA-ARIAELLAARA-------DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHH-HHHHHHHHHhc-------CC-CCeEEEECCCHHHHHHHHHHH
Confidence 3442333444 5569999999996643 34444442110 01 345999999999999998888
No 188
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.045 Score=55.30 Aligned_cols=162 Identities=12% Similarity=0.110 Sum_probs=81.4
Q ss_pred CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCc-HHHHHHHHHHHHHhcccCCcEEEEEECCC
Q 013189 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPT-RELSSQIHVEAKKFSYQTGVKVVVAYGGA 261 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt-reLa~qi~~~~~~~~~~~~~~~~~~~gg~ 261 (448)
+.++++++||+|||+...--+ ..+..... ......+||-+-| |.-+..+ ++.++...++.+...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA--~~~~~~~~------~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~~---- 239 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLA--AIYGINSD------DKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKAI---- 239 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHH--HHHHhhhc------cCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEee----
Confidence 568999999999998653222 11111000 0111224444444 4433332 444544445543222
Q ss_pred CHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEecc
Q 013189 262 PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 262 ~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
-++..+...+.. +...++|+||++.++... ..++.++...+....+....++.+|||
T Consensus 240 -----------------~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~--~~~l~el~~~l~~~~~~~e~~LVlsat 296 (388)
T PRK12723 240 -----------------ESFKDLKEEITQ----SKDFDLVLVDTIGKSPKD--FMKLAEMKELLNACGRDAEFHLAVSST 296 (388)
T ss_pred -----------------CcHHHHHHHHHH----hCCCCEEEEcCCCCCccC--HHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 133444444432 467899999999987532 223444444443222232457899999
Q ss_pred CC-hHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHH
Q 013189 342 FP-KEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQ 395 (448)
Q Consensus 342 ~~-~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~ 395 (448)
.. .++.+.+..|-.- ..-.-.+..+++..+.-.++.++...
T Consensus 297 ~~~~~~~~~~~~~~~~-------------~~~~~I~TKlDet~~~G~~l~~~~~~ 338 (388)
T PRK12723 297 TKTSDVKEIFHQFSPF-------------SYKTVIFTKLDETTCVGNLISLIYEM 338 (388)
T ss_pred CCHHHHHHHHHHhcCC-------------CCCEEEEEeccCCCcchHHHHHHHHH
Confidence 85 4455555554210 00011233455556666666666553
No 189
>PRK06526 transposase; Provisional
Probab=97.05 E-value=0.0018 Score=61.69 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=18.9
Q ss_pred hHhcCCCeeEeccCCCCcchhhh
Q 013189 178 ISIGGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 178 ~i~~g~d~li~a~TGsGKT~~~~ 200 (448)
.+..+.++++++|+|+|||....
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHH
Confidence 44567899999999999998644
No 190
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.00 E-value=0.0066 Score=60.84 Aligned_cols=133 Identities=19% Similarity=0.200 Sum_probs=66.2
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCc-HHHHHHHHHHHHHhcccCCcEEEEEEC
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPT-RELSSQIHVEAKKFSYQTGVKVVVAYG 259 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt-reLa~qi~~~~~~~~~~~~~~~~~~~g 259 (448)
.+..+++++|||+|||+...--+-......+. ...++|.+.+ |.-+ .+.++.|+...++.+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~----------~~V~lit~D~~R~ga---~EqL~~~a~~~gv~~~~--- 199 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGA----------SKVALLTTDSYRIGG---HEQLRIFGKILGVPVHA--- 199 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC----------CeEEEEecccccccH---HHHHHHHHHHcCCceEe---
Confidence 35679999999999999654322221211110 1123333322 2112 23444444434444333
Q ss_pred CCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEe
Q 013189 260 GAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 260 g~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~S 339 (448)
+-+++.+...+. .+.+.++|+||++-+... ...+...+..+.........++++|
T Consensus 200 ------------------~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~---d~~l~e~La~L~~~~~~~~~lLVLs 254 (374)
T PRK14722 200 ------------------VKDGGDLQLALA----ELRNKHMVLIDTIGMSQR---DRTVSDQIAMLHGADTPVQRLLLLN 254 (374)
T ss_pred ------------------cCCcccHHHHHH----HhcCCCEEEEcCCCCCcc---cHHHHHHHHHHhccCCCCeEEEEec
Confidence 333444433333 245568899999865422 1233333343322223334588899
Q ss_pred ccCCh-HHHHHHHHhh
Q 013189 340 ATFPK-EIQRLASDFL 354 (448)
Q Consensus 340 AT~~~-~v~~l~~~~l 354 (448)
||... .+.+.+..|.
T Consensus 255 Ats~~~~l~evi~~f~ 270 (374)
T PRK14722 255 ATSHGDTLNEVVQAYR 270 (374)
T ss_pred CccChHHHHHHHHHHH
Confidence 99844 4455666553
No 191
>PRK08181 transposase; Validated
Probab=96.99 E-value=0.0049 Score=59.18 Aligned_cols=49 Identities=12% Similarity=0.065 Sum_probs=28.6
Q ss_pred CCCeeEEEEecCCccCcCC-CHHHHHHHHHHcCCCCCCCceEEEEeccCChHHH
Q 013189 295 LQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~g-f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
+..+++|||||++.+.... ....+..|++... ....+|+.|-.-+.++.
T Consensus 165 l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~----~~~s~IiTSN~~~~~w~ 214 (269)
T PRK08181 165 LDKFDLLILDDLAYVTKDQAETSVLFELISARY----ERRSILITANQPFGEWN 214 (269)
T ss_pred HhcCCEEEEeccccccCCHHHHHHHHHHHHHHH----hCCCEEEEcCCCHHHHH
Confidence 4567889999999764332 2234566666542 22346665655555544
No 192
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.95 E-value=0.0082 Score=65.98 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=74.0
Q ss_pred CCCCHHHHhHhhhHhcC-CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~ 244 (448)
..+++-|+.|+..++.+ +-+++.++.|+|||...- .++. ++.. .+..+++++||---+..+.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~-~~~~-----------~g~~V~~~ApTg~Aa~~L~~~-- 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AARE-AWEA-----------AGYRVIGAALSGKAAEGLQAE-- 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHH-HHHh-----------CCCeEEEEeCcHHHHHHHHhc--
Confidence 35899999999988864 568999999999998532 2332 3222 134589999998776655431
Q ss_pred HhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHH
Q 013189 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 245 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
+++... |-.+++..+......+...++||||||-++-. .++..++..
T Consensus 416 -----~g~~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~----~~~~~Ll~~ 462 (744)
T TIGR02768 416 -----SGIESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGS----RQMARVLKE 462 (744)
T ss_pred -----cCCcee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCH----HHHHHHHHH
Confidence 122111 11122111122233466889999999986543 445555554
Q ss_pred cCCCCCCCceEEEEe
Q 013189 325 MDMPPPGMRQTMLFS 339 (448)
Q Consensus 325 l~~~~~~~~q~i~~S 339 (448)
.. ....++|++.
T Consensus 463 ~~---~~~~kliLVG 474 (744)
T TIGR02768 463 AE---EAGAKVVLVG 474 (744)
T ss_pred HH---hcCCEEEEEC
Confidence 31 2345666665
No 193
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.91 E-value=0.1 Score=59.23 Aligned_cols=125 Identities=18% Similarity=0.134 Sum_probs=76.4
Q ss_pred CCCCHHHHhHhhhHhc-CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIG-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~-g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~ 244 (448)
..+++-|..++..+.. ++-+++.+.-|+|||++.- ++.. +... .+.+++.++||-.-+..+.+.
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~-~~e~-----------~G~~V~g~ApTgkAA~~L~e~-- 444 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AARE-AWEA-----------AGYRVVGGALAGKAAEGLEKE-- 444 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHH-HHHH-----------cCCeEEEEcCcHHHHHHHHHh--
Confidence 4689999999998764 4568999999999998632 3333 3221 134588999997766554331
Q ss_pred HhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHH
Q 013189 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 245 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
.++... |-.+|+-.+..+...+..-++||||||-++-. .++..++..
T Consensus 445 -----~Gi~a~------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~----~~m~~Ll~~ 491 (1102)
T PRK13826 445 -----AGIQSR------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS----RQMALFVEA 491 (1102)
T ss_pred -----hCCCee------------------------eHHHHHhhhccCccCCCCCcEEEEECcccCCH----HHHHHHHHH
Confidence 222211 11111111112233466678999999995533 566677766
Q ss_pred cCCCCCCCceEEEEecc
Q 013189 325 MDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 325 l~~~~~~~~q~i~~SAT 341 (448)
.. ....++|++.=+
T Consensus 492 ~~---~~garvVLVGD~ 505 (1102)
T PRK13826 492 VT---RAGAKLVLVGDP 505 (1102)
T ss_pred HH---hcCCEEEEECCH
Confidence 62 235677777655
No 194
>PRK06893 DNA replication initiation factor; Validated
Probab=96.84 E-value=0.0034 Score=58.95 Aligned_cols=48 Identities=17% Similarity=0.273 Sum_probs=31.0
Q ss_pred CCCeeEEEEecCCccCcC-CCHHHHHHHHHHcCCCCCCCceEEEEeccCChH
Q 013189 295 LQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~-gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
+.++++|||||+|.+... .+...+..+++.+. ....+++++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~---~~~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIK---EQGKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHH---HcCCcEEEEeCCCChH
Confidence 356789999999988632 34455666666652 2234577788876443
No 195
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.82 E-value=0.006 Score=66.27 Aligned_cols=137 Identities=18% Similarity=0.199 Sum_probs=86.5
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCC-eeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEE
Q 013189 150 IDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALI 228 (448)
Q Consensus 150 ~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~li 228 (448)
..+.+.+... .+..++.-|++|+-.++..+| .+|.+=.|+|||.... .|-+++.. .+-++|.
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~--~LIkiL~~-----------~gkkVLL 718 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTIS--LLIKILVA-----------LGKKVLL 718 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHH--HHHHHHHH-----------cCCeEEE
Confidence 3455555543 234678899999998887776 8899999999998543 22233321 1234898
Q ss_pred EcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHH-----------------HHHhcCCcEEEeChhHHHHHHhcc
Q 013189 229 LAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL-----------------RELERGVDILVATPGRLVDLLERA 291 (448)
Q Consensus 229 l~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~-----------------~~l~~~~~Ilv~TP~~L~~~l~~~ 291 (448)
.+=|-.-+.-|.-.++.+. +.+.-+-.+..+..+. +..-+.+.|+.+|--.+.+.|-
T Consensus 719 tsyThsAVDNILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf-- 792 (1100)
T KOG1805|consen 719 TSYTHSAVDNILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF-- 792 (1100)
T ss_pred EehhhHHHHHHHHHHhccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh--
Confidence 8888887777777776653 2222212222222222 2333457888888666554443
Q ss_pred cccCCCeeEEEEecCCccCc
Q 013189 292 RVSLQMIRYLALDEADRMLD 311 (448)
Q Consensus 292 ~~~l~~v~~lVlDEah~ll~ 311 (448)
....++|+|||||-.++.
T Consensus 793 --~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 793 --VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred --hccccCEEEEcccccccc
Confidence 345689999999997754
No 196
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.82 E-value=0.077 Score=64.21 Aligned_cols=230 Identities=10% Similarity=0.119 Sum_probs=121.2
Q ss_pred CCCHHHHhHhhhHhcC--CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013189 167 KPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~ 244 (448)
.+++-|+.++..++.. +-.++.++.|+|||.+. -.++ .+.+. .+-.+++++||-.-+..+.+...
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~-~~~~~-----------~G~~V~~lAPTgrAA~~L~e~~g 495 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLL-HLASE-----------QGYEIQIITAGSLSAQELRQKIP 495 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHH-HHHHh-----------cCCeEEEEeCCHHHHHHHHHHhc
Confidence 5788999999988865 45899999999999853 2333 33322 23469999999987766655432
Q ss_pred HhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHH
Q 013189 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 245 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
..+ ..+......+... .-..|...|+ .....+..-++||||||-++-. .++..++..
T Consensus 496 ~~A-------------~Ti~~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~ 552 (1960)
T TIGR02760 496 RLA-------------STFITWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSN----NELLKLIDK 552 (1960)
T ss_pred chh-------------hhHHHHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEECCCCCCH----HHHHHHHHH
Confidence 211 1111111111111 1112222332 1223456778999999996533 566666665
Q ss_pred cCCCCCCCceEEEEecc--CC----hHHHHHHHHh-hcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHh
Q 013189 325 MDMPPPGMRQTMLFSAT--FP----KEIQRLASDF-LANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVA 397 (448)
Q Consensus 325 l~~~~~~~~q~i~~SAT--~~----~~v~~l~~~~-l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~ 397 (448)
.. ....++|++.=+ ++ -.+..++... +.-.....+.+... .+ .+...++.++...+.+.......
T Consensus 553 a~---~~garvVlvGD~~QL~sV~aG~~f~~L~~~gv~t~~l~~i~rq~~---~v--~i~~~~~~~r~~~ia~~y~~L~~ 624 (1960)
T TIGR02760 553 AE---QHNSKLILLNDSAQRQGMSAGSAIDLLKEGGVTTYAWVDTKQQKA---SV--EISEAVDKLRVDYIASAWLDLTP 624 (1960)
T ss_pred Hh---hcCCEEEEEcChhhcCccccchHHHHHHHCCCcEEEeecccccCc---ce--eeeccCchHHHHHHHHHHHhccc
Confidence 52 345678877655 22 2333333332 11111111111111 11 12222233333333332222211
Q ss_pred cCCCCCCccEEEEeCchHHHHHHHHHHHH----C------CCCeEEec-CCCCHHHHHH
Q 013189 398 NGVHGKQALTLVFVETKKGADALEHWLYM----N------GFPATTIH-GDRTQQRTSI 445 (448)
Q Consensus 398 ~~~~~~~~~~IIF~~t~~~a~~l~~~L~~----~------g~~~~~iH-g~~~q~eR~~ 445 (448)
....++||..+.++.+.|....+. . ++....+- -+|++.++..
T Consensus 625 -----~r~~tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~ 678 (1960)
T TIGR02760 625 -----DRQNSQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRN 678 (1960)
T ss_pred -----ccCceEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhh
Confidence 244699999999988888887643 2 23344444 3677777753
No 197
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.79 E-value=0.0026 Score=62.03 Aligned_cols=104 Identities=19% Similarity=0.124 Sum_probs=64.5
Q ss_pred CCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013189 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 168 pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~ 247 (448)
+|+-|..+|.. ...+++|.|..|||||.+.+-=++..+...+ ....++|+|++|+..+..+.+.+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~---------~~~~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG---------VPPERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS---------STGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc---------CChHHheecccCHHHHHHHHHHHHHhc
Confidence 47889999887 6778999999999999986544444333321 122349999999999999999998864
Q ss_pred ccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHH
Q 013189 248 YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLL 288 (448)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l 288 (448)
...... ................+.|+|-..+...+
T Consensus 70 ~~~~~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~l 104 (315)
T PF00580_consen 70 EEEQQE------SSDNERLRRQLSNIDRIYISTFHSFCYRL 104 (315)
T ss_dssp HHCCHC------CTT-HHHHHHHHHCTTSEEEEHHHHHHHH
T ss_pred Cccccc------ccccccccccccccchheeehhhhhhhhh
Confidence 322110 00000111222233567888877775544
No 198
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.78 E-value=0.0063 Score=67.22 Aligned_cols=45 Identities=16% Similarity=0.321 Sum_probs=27.5
Q ss_pred CCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHH
Q 013189 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEI 346 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v 346 (448)
...+++||||+|+|... ....+++.|..+ +....+|+++ |-+..+
T Consensus 119 ~~~KV~IIDEad~lt~~----a~NaLLK~LEEp-P~~~~fIl~t-t~~~kL 163 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQ----GFNALLKIVEEP-PEHLKFIFAT-TEPDKV 163 (824)
T ss_pred CCceEEEEechhhcCHH----HHHHHHHHHhCC-CCCeEEEEEe-CChhhh
Confidence 56789999999999763 334455555444 4445455444 544433
No 199
>PRK04296 thymidine kinase; Provisional
Probab=96.78 E-value=0.002 Score=58.68 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=25.4
Q ss_pred eChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 279 ATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 279 ~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
..+..+++.+.. .-..+++||||||+.+- .+++..++..+
T Consensus 63 ~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l 102 (190)
T PRK04296 63 SSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVL 102 (190)
T ss_pred CChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHH
Confidence 444555555543 23567899999998642 25566777775
No 200
>PRK05642 DNA replication initiation factor; Validated
Probab=96.75 E-value=0.0044 Score=58.36 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=28.4
Q ss_pred CCCeeEEEEecCCccCcC-CCHHHHHHHHHHcCCCCCCCceEEEEeccCC
Q 013189 295 LQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~-gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~ 343 (448)
+.++++||||++|.+... .+...+..+++.+. ...++ ++++++.+
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~---~~g~~-ilits~~~ 140 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLR---DSGRR-LLLAASKS 140 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHH---hcCCE-EEEeCCCC
Confidence 345678999999977532 34566777887762 22344 55566543
No 201
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.73 E-value=0.02 Score=56.61 Aligned_cols=51 Identities=8% Similarity=0.067 Sum_probs=29.4
Q ss_pred CCCeeEEEEecCCccCcCC-CHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHH
Q 013189 295 LQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~g-f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
+.++++||||+++...... ....+..|++..- .....+|+.|---+.++..
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~---~~~k~tIiTSNl~~~el~~ 295 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRL---LRQKKMIISTNLSLEELLK 295 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHH---HCCCCEEEECCCCHHHHHH
Confidence 4567899999998764333 2345666666552 2224465555544555543
No 202
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.73 E-value=0.011 Score=49.91 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=15.7
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
++.+++.+++|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678999999999999743
No 203
>PRK06921 hypothetical protein; Provisional
Probab=96.64 E-value=0.026 Score=54.17 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=19.1
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHh
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~ 208 (448)
.+..+++.+++|+|||... ..|...+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHh
Confidence 3567999999999999753 23344443
No 204
>PRK14974 cell division protein FtsY; Provisional
Probab=96.62 E-value=0.044 Score=54.35 Aligned_cols=55 Identities=22% Similarity=0.210 Sum_probs=39.2
Q ss_pred CCeeEEEEecCCccC-cCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhh
Q 013189 296 QMIRYLALDEADRML-DMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL 354 (448)
Q Consensus 296 ~~v~~lVlDEah~ll-~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l 354 (448)
...++|++|.+.++- +.....+++.+...+ .++..+++++||...+....+..|.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~----~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVT----KPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhh----CCceEEEeeccccchhHHHHHHHHH
Confidence 346799999999885 334566777777665 3455688999998777666666664
No 205
>PRK08727 hypothetical protein; Validated
Probab=96.47 E-value=0.012 Score=55.45 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=28.9
Q ss_pred CCCeeEEEEecCCccCcCC-CHHHHHHHHHHcCCCCCCCceEEEEeccCChHHH
Q 013189 295 LQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~g-f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
+.++++|||||+|.+.... ....+..+++.+. ....++|+.|-..|.++.
T Consensus 91 l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~---~~~~~vI~ts~~~p~~l~ 141 (233)
T PRK08727 91 LEGRSLVALDGLESIAGQREDEVALFDFHNRAR---AAGITLLYTARQMPDGLA 141 (233)
T ss_pred HhcCCEEEEeCcccccCChHHHHHHHHHHHHHH---HcCCeEEEECCCChhhhh
Confidence 3455789999999886432 3334555555552 123445555555565553
No 206
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.46 E-value=0.01 Score=58.24 Aligned_cols=145 Identities=15% Similarity=0.268 Sum_probs=84.2
Q ss_pred CCCCCCCHHHHhHhhhHhcCC-C-eeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013189 163 CKYVKPTPVQRHAIPISIGGR-D-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 163 ~~~~~pt~~Q~~~i~~i~~g~-d-~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~ 240 (448)
.|+.--+..|.-|+.+++... + |.+.++-|||||+.++...|...+..+. +-++||.=|+..+-.+|
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~----------y~KiiVtRp~vpvG~dI- 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR----------YRKIIVTRPTVPVGEDI- 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh----------hceEEEecCCcCccccc-
Confidence 366666778888998887543 3 7789999999999998888888776542 33577777877654332
Q ss_pred HHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCC----cEEEeChhHHHHHHhcccccCCCe----------eEEEEecC
Q 013189 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGV----DILVATPGRLVDLLERARVSLQMI----------RYLALDEA 306 (448)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~----~Ilv~TP~~L~~~l~~~~~~l~~v----------~~lVlDEa 306 (448)
++-+|.+-. ....+...+.+.- +.==++-+.|..++.+..+.+..+ .++|||||
T Consensus 293 ------GfLPG~eEe------Km~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEa 360 (436)
T COG1875 293 ------GFLPGTEEE------KMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEA 360 (436)
T ss_pred ------CcCCCchhh------hccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehh
Confidence 111111000 0000111111110 111122334555555544433222 57999999
Q ss_pred CccCcCCCHHHHHHHHHHcCCCCCCCceEEEE
Q 013189 307 DRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLF 338 (448)
Q Consensus 307 h~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~ 338 (448)
..|-. .+++.|+.+. -...++|++
T Consensus 361 QNLTp----heikTiltR~----G~GsKIVl~ 384 (436)
T COG1875 361 QNLTP----HELKTILTRA----GEGSKIVLT 384 (436)
T ss_pred hccCH----HHHHHHHHhc----cCCCEEEEc
Confidence 97754 7899999988 445556664
No 207
>PRK08116 hypothetical protein; Validated
Probab=96.39 E-value=0.035 Score=53.39 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=28.9
Q ss_pred CCCeeEEEEecCCcc--CcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHH
Q 013189 295 LQMIRYLALDEADRM--LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 295 l~~v~~lVlDEah~l--l~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
+.++++|||||++.. .++ ....+..|+...- .....+|+.|-.-+.++..
T Consensus 176 l~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~---~~~~~~IiTsN~~~~eL~~ 227 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEW-AREKVYNIIDSRY---RKGLPTIVTTNLSLEELKN 227 (268)
T ss_pred hcCCCEEEEecccCCCCCHH-HHHHHHHHHHHHH---HCCCCEEEECCCCHHHHHH
Confidence 456788999999643 222 2344555665541 2334577666665666543
No 208
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.38 E-value=0.2 Score=51.52 Aligned_cols=130 Identities=21% Similarity=0.259 Sum_probs=66.5
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHH-hhhhcccCCCCCCCCCceEEEEcCc-HHHHHHHHHHHHHhcccCCcEEEEEEC
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGI-MREQYVQRPRGSRTVYPLALILAPT-RELSSQIHVEAKKFSYQTGVKVVVAYG 259 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l-~~~~~~~~~~~~~~~~~~~lil~Pt-reLa~qi~~~~~~~~~~~~~~~~~~~g 259 (448)
++.+++.+|||+|||+...--+.... ...+ ...++|-+-+ |.-+ .+.++.++...++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g-----------~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~~---- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGK-----------KKVALITLDTYRIGA---VEQLKTYAKIMGIPVE---- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-----------CeEEEEECCccHHHH---HHHHHHHHHHhCCceE----
Confidence 56789999999999986432222111 1111 1124444433 3222 2334444333333322
Q ss_pred CCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCc-CCCHHHHHHHHHHcCCCCCCCceEEEE
Q 013189 260 GAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLF 338 (448)
Q Consensus 260 g~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~ 338 (448)
.+.++..+...+.. +...++||||.+-+... ......+..++... .......+++
T Consensus 283 -----------------~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~---~~~~~~~LVl 338 (424)
T PRK05703 283 -----------------VVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFS---GEPIDVYLVL 338 (424)
T ss_pred -----------------ccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhcc---CCCCeEEEEE
Confidence 22344555555542 34678999998865422 11223444554421 1223457889
Q ss_pred eccCC-hHHHHHHHHh
Q 013189 339 SATFP-KEIQRLASDF 353 (448)
Q Consensus 339 SAT~~-~~v~~l~~~~ 353 (448)
|||.. .++.+++..|
T Consensus 339 ~a~~~~~~l~~~~~~f 354 (424)
T PRK05703 339 SATTKYEDLKDIYKHF 354 (424)
T ss_pred ECCCCHHHHHHHHHHh
Confidence 99875 4566666555
No 209
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.37 E-value=0.036 Score=52.47 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=31.3
Q ss_pred CCCeeEEEEecCCccCcCCCHH-HHHHHHHHcCCCCCCCceEEEEeccCChHHHH
Q 013189 295 LQMIRYLALDEADRMLDMGFEP-QIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~-~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
+.++++|||||++......|.. .+..|+...- .....||+.|---+.++..
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry---~~~~~tiitSNl~~~~l~~ 211 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRS---SSKRPTGMLTNSNMEEMTK 211 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHH---hCCCCEEEeCCCCHHHHHH
Confidence 5578899999999876544443 3445665541 2234577766655555543
No 210
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.33 E-value=0.0088 Score=67.07 Aligned_cols=133 Identities=23% Similarity=0.230 Sum_probs=86.2
Q ss_pred CCCCHHHHhHhhhHh-----cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISI-----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~-----~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~ 240 (448)
..+.++|...+..+. .+.+.++....|.|||+..+.-+.. +..... ...+.++|+||+-. +.++.
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~~~--------~~~~~~liv~p~s~-~~nw~ 406 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESIK--------VYLGPALIVVPASL-LSNWK 406 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhccc--------CCCCCeEEEecHHH-HHHHH
Confidence 456788999887644 2567888899999999876544443 222110 11345899999855 45667
Q ss_pred HHHHHhcccCCcEEEEEECCCCH----HHHHHHHhcC-----CcEEEeChhHHHHHH-hcccccCCCeeEEEEecCCcc
Q 013189 241 VEAKKFSYQTGVKVVVAYGGAPI----NQQLRELERG-----VDILVATPGRLVDLL-ERARVSLQMIRYLALDEADRM 309 (448)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~gg~~~----~~~~~~l~~~-----~~Ilv~TP~~L~~~l-~~~~~~l~~v~~lVlDEah~l 309 (448)
+++.++...... +...+|.... ......+.+. .+|+++|.+.|...+ ....+.-....++|+||+|.+
T Consensus 407 ~e~~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~i 484 (866)
T COG0553 407 REFEKFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRI 484 (866)
T ss_pred HHHhhhCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHH
Confidence 777888654332 5555555431 3344433332 689999999988743 222344566789999999985
No 211
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.32 E-value=0.012 Score=55.47 Aligned_cols=44 Identities=11% Similarity=0.234 Sum_probs=26.3
Q ss_pred CeeEEEEecCCccCc-CCCHHHHHHHHHHcCCCCCCCceEEEEeccCC
Q 013189 297 MIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 297 ~v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~ 343 (448)
++++|||||+|.+.. ..+...+..+++.+.. ....++|+ |++.+
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e--~g~~~li~-ts~~~ 141 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILE--SGRTRLLI-TGDRP 141 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHH--cCCCeEEE-eCCCC
Confidence 346899999998854 2355666677766521 12234555 55543
No 212
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.31 E-value=0.012 Score=53.91 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=47.7
Q ss_pred CCeeEEEEecCCccCc-CCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeE
Q 013189 296 QMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ 374 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q 374 (448)
+++++|+||-+-+... ....+++..+++.+ ....-.+.+|||...+....+..|.... ... .-
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~----~~~~~~LVlsa~~~~~~~~~~~~~~~~~----------~~~--~l 145 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEAL----NPDEVHLVLSATMGQEDLEQALAFYEAF----------GID--GL 145 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH----SSSEEEEEEEGGGGGHHHHHHHHHHHHS----------STC--EE
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhc----CCccceEEEecccChHHHHHHHHHhhcc----------cCc--eE
Confidence 4567788888765532 12345666777776 4445688999999766555454443210 001 01
Q ss_pred EEEEecccchHHHHHHHHHHH
Q 013189 375 RVEFVHESDKRSHLMDLLHAQ 395 (448)
Q Consensus 375 ~~~~~~~~~k~~~L~~ll~~~ 395 (448)
.+..+++..+.-.++.++...
T Consensus 146 IlTKlDet~~~G~~l~~~~~~ 166 (196)
T PF00448_consen 146 ILTKLDETARLGALLSLAYES 166 (196)
T ss_dssp EEESTTSSSTTHHHHHHHHHH
T ss_pred EEEeecCCCCcccceeHHHHh
Confidence 233456666666777777664
No 213
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.044 Score=57.01 Aligned_cols=45 Identities=11% Similarity=0.236 Sum_probs=28.4
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChH
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
....+++||||+|.|.. .....+++.+..++ ....+| |.+|-...
T Consensus 114 ~~~~KVvIIDEah~Ls~----~A~NaLLK~LEePp-~~v~fI-latte~~K 158 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSN----SAFNALLKTLEEPA-PHVKFI-LATTEVKK 158 (491)
T ss_pred cCCceEEEEeChHhCCH----HHHHHHHHHHhCCC-CCeEEE-EEeCChHH
Confidence 46788999999998865 34556666676654 344344 44454333
No 214
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.26 E-value=0.011 Score=51.25 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=14.1
Q ss_pred eeEeccCCCCcchhhhh
Q 013189 185 LMACAQTGSGKTAAFCF 201 (448)
Q Consensus 185 ~li~a~TGsGKT~~~~l 201 (448)
+++++++|+|||.....
T Consensus 2 ~~i~G~~G~GKT~l~~~ 18 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ 18 (165)
T ss_pred eeEeCCCCCCHHHHHHH
Confidence 67899999999996443
No 215
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.25 E-value=0.012 Score=54.82 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=34.2
Q ss_pred CCCeeEEEEecCCccCcC-CCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHH
Q 013189 295 LQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~-gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
+..+++||||++|.+... .+.+.+..+++.+. ....|+|+.|...|.++.
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~---~~~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLI---ESGKQLILTSDRPPSELS 145 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHH---HTTSEEEEEESS-TTTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHH---hhCCeEEEEeCCCCcccc
Confidence 457889999999998653 24556666776663 334678888877777654
No 216
>PRK12377 putative replication protein; Provisional
Probab=96.25 E-value=0.033 Score=52.83 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=28.1
Q ss_pred CCCeeEEEEecCCccCcCCC-HHHHHHHHHHcCCCCCCCceEEEEeccCChHHH
Q 013189 295 LQMIRYLALDEADRMLDMGF-EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf-~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
+.++++|||||++......+ .+.+..|++..- ...+.+|+.|---..++.
T Consensus 161 l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~---~~~~ptiitSNl~~~~l~ 211 (248)
T PRK12377 161 LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRT---ASMRSVGMLTNLNHEAMS 211 (248)
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHH---hcCCCEEEEcCCCHHHHH
Confidence 57889999999965533222 234455555541 223456666554344443
No 217
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.24 E-value=0.0078 Score=50.40 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=15.6
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
+..+++.+|+|+|||...
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 467899999999999964
No 218
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.20 E-value=0.03 Score=53.64 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.9
Q ss_pred CCCeeEeccCCCCcchhhh
Q 013189 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~ 200 (448)
..++++.+|+|+|||...-
T Consensus 42 ~~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred cceEEEEcCCCCCHHHHHH
Confidence 3578999999999998653
No 219
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.26 Score=49.75 Aligned_cols=101 Identities=14% Similarity=0.223 Sum_probs=55.0
Q ss_pred EeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccC-ChHHHHHHHHhhcC
Q 013189 278 VATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF-PKEIQRLASDFLAN 356 (448)
Q Consensus 278 v~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~-~~~v~~l~~~~l~~ 356 (448)
+.+|..|.+.+..... -.+.++|+||-+=+.... ...+.++...+....+ ..-++.+|||. ..++...+..|-.-
T Consensus 302 ~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd--~~lm~EL~~~lk~~~P-devlLVLsATtk~~d~~~i~~~F~~~ 377 (436)
T PRK11889 302 VRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRA--SETVEEMIETMGQVEP-DYICLTLSASMKSKDMIEIITNFKDI 377 (436)
T ss_pred cCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcC--HHHHHHHHHHHhhcCC-CeEEEEECCccChHHHHHHHHHhcCC
Confidence 3466667666643211 125788999988775432 2345555444433223 33467799976 45667777665320
Q ss_pred cEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHH
Q 013189 357 YIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQ 395 (448)
Q Consensus 357 ~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~ 395 (448)
... .-.+..+++..+.-.++.++...
T Consensus 378 -----------~id--glI~TKLDET~k~G~iLni~~~~ 403 (436)
T PRK11889 378 -----------HID--GIVFTKFDETASSGELLKIPAVS 403 (436)
T ss_pred -----------CCC--EEEEEcccCCCCccHHHHHHHHH
Confidence 011 11234556666666677776654
No 220
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.19 E-value=0.037 Score=53.46 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=56.6
Q ss_pred CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH-hcccCCcEEEEEECCC
Q 013189 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK-FSYQTGVKVVVAYGGA 261 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~-~~~~~~~~~~~~~gg~ 261 (448)
.+++++++|+.|||.. +.++...-..... ......|.++|-+|...-....+..+-. ++.. +...
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d-~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP--------~~~~ 127 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSD-EDAERIPVVYVQMPPEPDERRFYSAILEALGAP--------YRPR 127 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCC-CCCccccEEEEecCCCCChHHHHHHHHHHhCcc--------cCCC
Confidence 4799999999999993 3444432222111 1222347788888888877777666644 3222 1111
Q ss_pred CHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCC
Q 013189 262 PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG 313 (448)
Q Consensus 262 ~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~g 313 (448)
........ ..+.++. --.+++|||||+|.++.-.
T Consensus 128 ~~~~~~~~-------------~~~~llr-----~~~vrmLIIDE~H~lLaGs 161 (302)
T PF05621_consen 128 DRVAKLEQ-------------QVLRLLR-----RLGVRMLIIDEFHNLLAGS 161 (302)
T ss_pred CCHHHHHH-------------HHHHHHH-----HcCCcEEEeechHHHhccc
Confidence 11111110 1223333 3468899999999998754
No 221
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.18 E-value=0.3 Score=49.05 Aligned_cols=133 Identities=20% Similarity=0.315 Sum_probs=69.1
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECC
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGG 260 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg 260 (448)
.++.+++++|||-|||+.. .=|...+... ....-.+||..-|--.. -++.++.|+...++.+.+++.
T Consensus 202 ~~~vi~LVGPTGVGKTTTl--AKLAar~~~~--------~~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~~vv~~- 268 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTL--AKLAARYVML--------KKKKKVAIITTDTYRIG--AVEQLKTYADIMGVPLEVVYS- 268 (407)
T ss_pred cCcEEEEECCCCCcHHHHH--HHHHHHHHhh--------ccCcceEEEEeccchhh--HHHHHHHHHHHhCCceEEecC-
Confidence 3778999999999999852 2222222200 01123477777664432 234555555555665555544
Q ss_pred CCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEec
Q 013189 261 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 261 ~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
|.-|...+. .+.++++|.||=+-+-.-. ...+.++-..++-- ...--.+.+||
T Consensus 269 --------------------~~el~~ai~----~l~~~d~ILVDTaGrs~~D--~~~i~el~~~~~~~-~~i~~~Lvlsa 321 (407)
T COG1419 269 --------------------PKELAEAIE----ALRDCDVILVDTAGRSQYD--KEKIEELKELIDVS-HSIEVYLVLSA 321 (407)
T ss_pred --------------------HHHHHHHHH----HhhcCCEEEEeCCCCCccC--HHHHHHHHHHHhcc-ccceEEEEEec
Confidence 333433332 3455566666655432111 12333333333222 33344788899
Q ss_pred cCC-hHHHHHHHHh
Q 013189 341 TFP-KEIQRLASDF 353 (448)
Q Consensus 341 T~~-~~v~~l~~~~ 353 (448)
|.. .++++....|
T Consensus 322 t~K~~dlkei~~~f 335 (407)
T COG1419 322 TTKYEDLKEIIKQF 335 (407)
T ss_pred CcchHHHHHHHHHh
Confidence 874 5556666555
No 222
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=96.18 E-value=0.017 Score=60.73 Aligned_cols=157 Identities=17% Similarity=0.268 Sum_probs=99.0
Q ss_pred HHHHhHhhhHh----cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 170 PVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 170 ~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
.+|-+-+..+. .|-+-|+.-..|-|||... +.+|.++..... .-+| -|||+|.-.|-+. +.++.+
T Consensus 570 EYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQs-isvlAhLaE~~n--------IwGP-FLVVtpaStL~NW-aqEisr 638 (1185)
T KOG0388|consen 570 EYQLKGLNWLVNLYDQGINGILADEMGLGKTVQS-ISVLAHLAETHN--------IWGP-FLVVTPASTLHNW-AQEISR 638 (1185)
T ss_pred HHhhccHHHHHHHHHccccceehhhhccchhHHH-HHHHHHHHHhcc--------CCCc-eEEeehHHHHhHH-HHHHHH
Confidence 46777766554 5678888999999999984 566777765432 1233 5889998888654 666777
Q ss_pred hcccCCcEEEEEECCCCHHHHHHHH---------hcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHH
Q 013189 246 FSYQTGVKVVVAYGGAPINQQLREL---------ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEP 316 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l---------~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~ 316 (448)
|+ +.++++-..|+..-....++. ..+.+|+|+|.+.++.--. .+.--...|.|||||..+-... ..
T Consensus 639 Fl--P~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDek--y~qkvKWQYMILDEAQAIKSSs-S~ 713 (1185)
T KOG0388|consen 639 FL--PSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEK--YLQKVKWQYMILDEAQAIKSSS-SS 713 (1185)
T ss_pred hC--ccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHH--HHHhhhhhheehhHHHHhhhhh-hh
Confidence 75 457888888887755554442 1247999999887743211 1112345789999999885422 12
Q ss_pred HHHHHHHHcCCCCCCCceEEEEeccC-ChHHHH
Q 013189 317 QIRKIVQQMDMPPPGMRQTMLFSATF-PKEIQR 348 (448)
Q Consensus 317 ~i~~i~~~l~~~~~~~~q~i~~SAT~-~~~v~~ 348 (448)
.+..++..- .+--++++.|. -..+++
T Consensus 714 RWKtLLsF~------cRNRLLLTGTPIQNsMqE 740 (1185)
T KOG0388|consen 714 RWKTLLSFK------CRNRLLLTGTPIQNSMQE 740 (1185)
T ss_pred HHHHHhhhh------ccceeeecCCccchHHHH
Confidence 333333321 23357888885 333443
No 223
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.17 E-value=0.019 Score=53.46 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=16.6
Q ss_pred cCCCeeEeccCCCCcchhhh
Q 013189 181 GGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~ 200 (448)
....+++.+++|+|||....
T Consensus 37 ~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45679999999999998643
No 224
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.09 E-value=0.025 Score=61.14 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=14.3
Q ss_pred eeEeccCCCCcchhhhh
Q 013189 185 LMACAQTGSGKTAAFCF 201 (448)
Q Consensus 185 ~li~a~TGsGKT~~~~l 201 (448)
+|++++.|+|||.+..+
T Consensus 41 yLFtGPpGvGKTTlAri 57 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRI 57 (830)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999986543
No 225
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.08 E-value=0.0094 Score=53.65 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=19.9
Q ss_pred HhcCCCeeEeccCCCCcchhhhhhHHHHHhh
Q 013189 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 179 i~~g~d~li~a~TGsGKT~~~~lpil~~l~~ 209 (448)
+..++++++.+++|+|||.... .+...++.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~-ai~~~~~~ 73 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAV-AIANEAIR 73 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHH-HHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHH-HHHHHhcc
Confidence 3467899999999999998743 34444544
No 226
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.06 E-value=0.031 Score=57.68 Aligned_cols=53 Identities=8% Similarity=0.212 Sum_probs=33.3
Q ss_pred CCCeeEEEEecCCccCcCC-CHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHH
Q 013189 295 LQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLA 350 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~g-f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~ 350 (448)
+.++++|+|||+|.+.... ..+.+..+++.+. ....|+|+.|-+.|.++..+.
T Consensus 200 ~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~---~~~k~IIlts~~~p~~l~~l~ 253 (445)
T PRK12422 200 YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLH---TEGKLIVISSTCAPQDLKAME 253 (445)
T ss_pred cccCCEEEEcchhhhcCChhhHHHHHHHHHHHH---HCCCcEEEecCCCHHHHhhhH
Confidence 3467889999999886532 3456666666552 223566666656666665443
No 227
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.04 E-value=0.031 Score=59.33 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=32.6
Q ss_pred CCCeeEEEEecCCccCcCC-CHHHHHHHHHHcCCCCCCCceEEEEeccCChHHH
Q 013189 295 LQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~g-f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
+.++++|||||+|.+.... ....+..+++.+. ....++|+.|-..|.++.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~---e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLH---NANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHH---hcCCCEEEecCCChHhhh
Confidence 4457889999999886532 3455667777663 234667776665566554
No 228
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.03 E-value=0.15 Score=51.99 Aligned_cols=133 Identities=16% Similarity=0.184 Sum_probs=63.6
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECC
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGG 260 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg 260 (448)
.+.-+.++++||+|||+....-+-..+.... .....++.+.+.-.. ..+.+..++...++.+..+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~----------~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~-- 255 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHG----------ADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIK-- 255 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC----------CCeEEEEecCCcchh--HHHHHHHHHHHcCCceecCC--
Confidence 3556889999999999964322211111111 011256666663321 12234444433444443322
Q ss_pred CCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEec
Q 013189 261 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 261 ~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
++..+...+. .+...+++++|.+-+.- ....+..-+..+.........++++||
T Consensus 256 -------------------~~~dl~~al~----~l~~~d~VLIDTaGrsq---rd~~~~~~l~~l~~~~~~~~~~LVl~a 309 (420)
T PRK14721 256 -------------------DIADLQLMLH----ELRGKHMVLIDTVGMSQ---RDQMLAEQIAMLSQCGTQVKHLLLLNA 309 (420)
T ss_pred -------------------CHHHHHHHHH----HhcCCCEEEecCCCCCc---chHHHHHHHHHHhccCCCceEEEEEcC
Confidence 2222222222 24566778888763221 112222222333222233456788999
Q ss_pred cC-ChHHHHHHHHh
Q 013189 341 TF-PKEIQRLASDF 353 (448)
Q Consensus 341 T~-~~~v~~l~~~~ 353 (448)
|. ...+.+.+..|
T Consensus 310 t~~~~~~~~~~~~f 323 (420)
T PRK14721 310 TSSGDTLDEVISAY 323 (420)
T ss_pred CCCHHHHHHHHHHh
Confidence 97 44566666555
No 229
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.99 E-value=0.02 Score=58.48 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=25.9
Q ss_pred CCHHHHhHhhhHhcCCCeeEeccCCCCcchhhh
Q 013189 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 168 pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~ 200 (448)
+-......+..+..++++++++++|+|||....
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 444555666677789999999999999998653
No 230
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.95 E-value=0.039 Score=56.05 Aligned_cols=17 Identities=24% Similarity=0.499 Sum_probs=15.2
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
.++++.+++|+|||...
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999963
No 231
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.94 E-value=0.0023 Score=57.19 Aligned_cols=123 Identities=22% Similarity=0.199 Sum_probs=54.3
Q ss_pred eEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHH
Q 013189 186 MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQ 265 (448)
Q Consensus 186 li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~ 265 (448)
++.|+-|-|||.+.-+.+-..+. . ...+++|.+|+.+-+..+++.+.+-....+++....... ..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~-~-----------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~ 65 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQ-K-----------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQ 65 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----------------EEEE-SS--S-HHHHHCC----------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHH-h-----------cCceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---cc
Confidence 57889999999986665433221 1 114599999999999998887766544333332000000 00
Q ss_pred HHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccC
Q 013189 266 QLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 266 ~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
..........|-+..|+.+... ....++||||||=.+-- +.+..++... . .++||.|.
T Consensus 66 ~~~~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp~----p~L~~ll~~~-------~-~vv~stTi 123 (177)
T PF05127_consen 66 IIKLRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIPL----PLLKQLLRRF-------P-RVVFSTTI 123 (177)
T ss_dssp -------CCC--B--HHHHCCT-----------SCEEECTGGGS-H----HHHHHHHCCS-------S-EEEEEEEB
T ss_pred ccccccccceEEEECCHHHHhC-------cCCCCEEEEechhcCCH----HHHHHHHhhC-------C-EEEEEeec
Confidence 0001112356777777665432 22357899999986633 5666665332 2 56778886
No 232
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.90 E-value=0.12 Score=55.22 Aligned_cols=41 Identities=12% Similarity=0.302 Sum_probs=26.5
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEec
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
....+++||||+|+|... ....+++.|..+ +....+|+.|-
T Consensus 122 ~gr~KViIIDEah~Ls~~----AaNALLKTLEEP-P~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNH----AFNAMLKTLEEP-PEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHH----HHHHHHHhhccC-CCCceEEEEeC
Confidence 356789999999988663 344555556554 44555555543
No 233
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.86 E-value=0.0071 Score=62.56 Aligned_cols=146 Identities=20% Similarity=0.193 Sum_probs=72.3
Q ss_pred EeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH-hcccCCcEEEEEECCCCHHH
Q 013189 187 ACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK-FSYQTGVKVVVAYGGAPINQ 265 (448)
Q Consensus 187 i~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~-~~~~~~~~~~~~~gg~~~~~ 265 (448)
+.+.||||||++..--||..+ ..++ -.-|+.|..-.........+.. .....-..-.+.+++..+.-
T Consensus 2 f~matgsgkt~~ma~lil~~y-~kgy-----------r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~i 69 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECY-KKGY-----------RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEI 69 (812)
T ss_pred cccccCCChhhHHHHHHHHHH-Hhch-----------hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeee
Confidence 457899999998665555533 3322 2256665554444433332211 10000000111122222110
Q ss_pred ----HHHHHhcCCcEEEeChhHHHHHHhccc---c---cCCCeeEE-EEecCCccCcCC---------CHHHHHHHHHHc
Q 013189 266 ----QLRELERGVDILVATPGRLVDLLERAR---V---SLQMIRYL-ALDEADRMLDMG---------FEPQIRKIVQQM 325 (448)
Q Consensus 266 ----~~~~l~~~~~Ilv~TP~~L~~~l~~~~---~---~l~~v~~l-VlDEah~ll~~g---------f~~~i~~i~~~l 325 (448)
....-.++..|.++|.+.|...+.+.+ + ++.+..+| +-||||++-..- -...++..+..-
T Consensus 70 kkvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la 149 (812)
T COG3421 70 KKVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLA 149 (812)
T ss_pred eeecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHH
Confidence 011123457899999999988775533 2 45555544 669999984321 111122222111
Q ss_pred CCCCCCCceEEEEeccCChH
Q 013189 326 DMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 326 ~~~~~~~~q~i~~SAT~~~~ 345 (448)
.. ..++--++.||||++++
T Consensus 150 ~~-~nkd~~~lef~at~~k~ 168 (812)
T COG3421 150 LE-QNKDNLLLEFSATIPKE 168 (812)
T ss_pred Hh-cCCCceeehhhhcCCcc
Confidence 11 13445588999999844
No 234
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.86 E-value=0.042 Score=56.16 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=27.9
Q ss_pred CeeEEEEecCCccCcCC-CHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHH
Q 013189 297 MIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 297 ~v~~lVlDEah~ll~~g-f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
.+++|||||+|.+.... ....+..++..+. ...+++|+.|...|.++..
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~---~~~~~iiits~~~p~~l~~ 248 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALH---ENGKQIVLTSDRPPKELPG 248 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHH---HCCCCEEEecCCCHHHHhh
Confidence 46789999999876432 2334555565552 2235565544444555443
No 235
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.84 E-value=0.04 Score=57.05 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=30.9
Q ss_pred CCCeeEEEEecCCccCcC-CCHHHHHHHHHHcCCCCCCCceEEEEeccCChHH
Q 013189 295 LQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEI 346 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~-gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v 346 (448)
+.++++|||||+|.+... ...+.+..+++.+. ....|+|+.|-..|.++
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~---~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI---ENDKQLFFSSDKSPELL 253 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHH---HcCCcEEEECCCCHHHH
Confidence 456789999999987532 24456667776663 22346666655555554
No 236
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.14 Score=54.69 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=27.3
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChH
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
....+++||||+|+|... ....+++.+..+ +....+|+.+ |-+..
T Consensus 116 ~~~~KVvIIDEah~Lt~~----A~NALLK~LEEp-p~~~~fIL~t-te~~k 160 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA----GFNALLKIVEEP-PEHLIFIFAT-TEPEK 160 (584)
T ss_pred cCCceEEEEECCCcCCHH----HHHHHHHHHhcC-CCCeEEEEEe-CChHh
Confidence 356789999999998763 344455555544 3444444444 54433
No 237
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.82 E-value=0.052 Score=58.63 Aligned_cols=147 Identities=22% Similarity=0.241 Sum_probs=87.5
Q ss_pred HHHCCCCCCCHHHHhHhhhHhcC--CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHH
Q 013189 160 IRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSS 237 (448)
Q Consensus 160 l~~~~~~~pt~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~ 237 (448)
+.....+.+..-|.+.+..++.. +-+++.|.-|=|||.+.-|.+.. +.+.. . ...++|++|+.+-+.
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~~~~~---------~-~~~iiVTAP~~~nv~ 275 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-AARLA---------G-SVRIIVTAPTPANVQ 275 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH-HHHhc---------C-CceEEEeCCCHHHHH
Confidence 44444445555555566556543 35899999999999998877732 22211 0 346999999999999
Q ss_pred HHHHHHHHhcccCCcEEEEEECCCCHHHHHHHH-hcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHH
Q 013189 238 QIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL-ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEP 316 (448)
Q Consensus 238 qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l-~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~ 316 (448)
.+++.+.+-....+++-.+...... ..... .+...|=+-+|.... .. -++||||||=.+-- +
T Consensus 276 ~Lf~fa~~~l~~lg~~~~v~~d~~g---~~~~~~~~~~~i~y~~P~~a~---------~~-~DllvVDEAAaIpl----p 338 (758)
T COG1444 276 TLFEFAGKGLEFLGYKRKVAPDALG---EIREVSGDGFRIEYVPPDDAQ---------EE-ADLLVVDEAAAIPL----P 338 (758)
T ss_pred HHHHHHHHhHHHhCCcccccccccc---ceeeecCCceeEEeeCcchhc---------cc-CCEEEEehhhcCCh----H
Confidence 8888876654444433222211100 00000 012234455554322 11 67899999986633 6
Q ss_pred HHHHHHHHcCCCCCCCceEEEEeccC
Q 013189 317 QIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 317 ~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
.+.+++... +.++||.|+
T Consensus 339 lL~~l~~~~--------~rv~~sTTI 356 (758)
T COG1444 339 LLHKLLRRF--------PRVLFSTTI 356 (758)
T ss_pred HHHHHHhhc--------CceEEEeee
Confidence 667776654 358899996
No 238
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.81 E-value=0.022 Score=59.56 Aligned_cols=126 Identities=16% Similarity=0.105 Sum_probs=74.6
Q ss_pred HHHHhHhhhHhc-----C----CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013189 170 PVQRHAIPISIG-----G----RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 170 ~~Q~~~i~~i~~-----g----~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~ 240 (448)
|+|+..+-.++. | +.+++.-+=+.|||......+|..++-.+ ..+..+++++++++-|..++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g---------~~~~~i~~~A~~~~QA~~~f 71 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG---------EPGAEIYCAANTRDQAKIVF 71 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC---------ccCceEEEEeCCHHHHHHHH
Confidence 577777766552 2 35888889999999976655555554322 23467999999999999999
Q ss_pred HHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhc--ccccCCCeeEEEEecCCccCc
Q 013189 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER--ARVSLQMIRYLALDEADRMLD 311 (448)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~--~~~~l~~v~~lVlDEah~ll~ 311 (448)
+.++++.......... .. ....... .-.|.....+.++..+.. ...+-.+..++|+||+|.+-+
T Consensus 72 ~~~~~~i~~~~~l~~~-~~-----~~~~~~~-~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~ 137 (477)
T PF03354_consen 72 DEAKKMIEASPELRKR-KK-----PKIIKSN-KKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKD 137 (477)
T ss_pred HHHHHHHHhChhhccc-hh-----hhhhhhh-ceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCC
Confidence 9999886432111000 00 0000000 123333333333333322 233445679999999998866
No 239
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.75 E-value=0.048 Score=56.34 Aligned_cols=52 Identities=10% Similarity=0.268 Sum_probs=31.3
Q ss_pred CeeEEEEecCCccCcCC-CHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHH
Q 013189 297 MIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS 351 (448)
Q Consensus 297 ~v~~lVlDEah~ll~~g-f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~ 351 (448)
.+++|||||+|.+++.. ....+..+++.+. ....|+|+.|-..|.++..+..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~---~~~k~iIitsd~~p~~l~~l~~ 246 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELH---DSGKQIVICSDREPQKLSEFQD 246 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHH---HcCCeEEEECCCCHHHHHHHHH
Confidence 56789999999886532 3345556665552 2234566655555666655433
No 240
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.72 E-value=0.1 Score=55.91 Aligned_cols=40 Identities=10% Similarity=0.257 Sum_probs=26.2
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEe
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~S 339 (448)
+...+++||||+|.|.. .....+++.|..+ +....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~----~a~naLLKtLEeP-p~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLST----AAFNALLKTLEEP-PPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCH----HHHHHHHHHHHhC-CCCeEEEEEe
Confidence 46678999999998865 3455566666554 3445455544
No 241
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.72 E-value=0.066 Score=55.57 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=29.1
Q ss_pred CCeeEEEEecCCccCcCC-CHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHH
Q 013189 296 QMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~g-f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
.++++|||||+|.+.... ....+..+++.+. ....++|+.|...|.++..
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~---~~~~~iiits~~~p~~l~~ 260 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALH---EAGKQIVLTSDRPPKELPG 260 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHH---HCCCcEEEECCCCHHHHHH
Confidence 357789999999875432 2345556665552 2234565555544555443
No 242
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=95.71 E-value=0.037 Score=60.99 Aligned_cols=76 Identities=18% Similarity=0.145 Sum_probs=59.6
Q ss_pred CcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCC------hHHH
Q 013189 274 VDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP------KEIQ 347 (448)
Q Consensus 274 ~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~------~~v~ 347 (448)
..|+++||..|..-|..+.+++..|..|||||||++.+..-+..|.+++..- .+.--+.+|||... ..+.
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~----n~~gfIkafSdsP~~~~~g~~~l~ 83 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQK----NKTGFIKAFSDNPEAFTMGFSPLE 83 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHh----CCCcceEEecCCCcccccchHHHH
Confidence 4799999999998888899999999999999999998876666666666665 33334899999864 3455
Q ss_pred HHHHHh
Q 013189 348 RLASDF 353 (448)
Q Consensus 348 ~l~~~~ 353 (448)
.++++.
T Consensus 84 ~vmk~L 89 (814)
T TIGR00596 84 TKMRNL 89 (814)
T ss_pred HHHHHh
Confidence 555554
No 243
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.66 E-value=0.082 Score=58.30 Aligned_cols=45 Identities=16% Similarity=0.347 Sum_probs=27.0
Q ss_pred CCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHH
Q 013189 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEI 346 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v 346 (448)
...+++||||||+|.. .....+++.|..+ +....+|+. +|-+..+
T Consensus 118 gk~KViIIDEAh~LT~----eAqNALLKtLEEP-P~~vrFILa-TTe~~kL 162 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR----SSFNALLKTLEEP-PEHVKFLLA-TTDPQKL 162 (944)
T ss_pred CCcEEEEEechHhcCH----HHHHHHHHHHhcc-CCCeEEEEE-CCCchhc
Confidence 4678999999999864 3444455555444 444545543 5544443
No 244
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.65 E-value=0.039 Score=52.65 Aligned_cols=51 Identities=18% Similarity=0.337 Sum_probs=34.7
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
.+.++++.+++|+|||.... .|-+.+... +.-++++++-+|+.++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~-Ai~~~l~~~-------------g~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAI-AIGNELLKA-------------GISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHHc-------------CCeEEEEEHHHHHHHHHHHHhc
Confidence 67899999999999998643 333444422 2356677888888776654443
No 245
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.64 E-value=0.44 Score=49.86 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=34.0
Q ss_pred hhHHHHHHhcccccCCCeeEEEEecCCccCcC-CCHHHHHHHHHHcCCCCCCCceEEEEeccCC-hHHHHHHHHh
Q 013189 281 PGRLVDLLERARVSLQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFP-KEIQRLASDF 353 (448)
Q Consensus 281 P~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~-gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~-~~v~~l~~~~ 353 (448)
+..|...+.. +.+.++|+||.+-+.-.. ....++..+.... ....+++++++.. .++..+++.|
T Consensus 416 ~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-----~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 416 AESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-----QVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred HHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHHhh-----cCCcEEEEECCCChhHHHHHHHHH
Confidence 3445555542 346789999998764221 1112233222221 1234788888874 4566666555
No 246
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.63 E-value=0.17 Score=54.41 Aligned_cols=43 Identities=16% Similarity=0.345 Sum_probs=25.6
Q ss_pred CCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCCh
Q 013189 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~ 344 (448)
...+++||||+|+|... ....+++.+..+ +....+|+ ..|-+.
T Consensus 118 g~~KV~IIDEah~Ls~~----a~NALLKtLEEP-p~~v~FIL-~Tt~~~ 160 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH----SFNALLKTLEEP-PEHVKFLL-ATTDPQ 160 (647)
T ss_pred CCCEEEEEechHhCCHH----HHHHHHHHHHcC-CCCeEEEE-ecCCcc
Confidence 46789999999988763 344455555444 33443444 344333
No 247
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.60 E-value=0.068 Score=54.65 Aligned_cols=74 Identities=16% Similarity=0.026 Sum_probs=44.4
Q ss_pred CCCCCCHHHHhHhhhH----hcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHH
Q 013189 164 KYVKPTPVQRHAIPIS----IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI 239 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i----~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi 239 (448)
.|..-.|-|..-+-.+ -.+-++++-.|+|+|||.+.+--++...++.+. ...+.|+-+-|..-+...
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~---------~~~KliYCSRTvpEieK~ 83 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD---------EHRKLIYCSRTVPEIEKA 83 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc---------ccceEEEecCcchHHHHH
Confidence 4566677776655433 245679999999999999866555554444321 112355555555555555
Q ss_pred HHHHHHh
Q 013189 240 HVEAKKF 246 (448)
Q Consensus 240 ~~~~~~~ 246 (448)
..+++.+
T Consensus 84 l~El~~l 90 (755)
T KOG1131|consen 84 LEELKRL 90 (755)
T ss_pred HHHHHHH
Confidence 5555544
No 248
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.58 E-value=0.1 Score=51.70 Aligned_cols=34 Identities=26% Similarity=0.221 Sum_probs=25.9
Q ss_pred CCHHHHhHhhhHhc-CC---CeeEeccCCCCcchhhhh
Q 013189 168 PTPVQRHAIPISIG-GR---DLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 168 pt~~Q~~~i~~i~~-g~---d~li~a~TGsGKT~~~~l 201 (448)
..|+|...+..+.. ++ -+++++|.|.|||.....
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 46888888877663 32 388999999999986543
No 249
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.56 E-value=0.057 Score=48.47 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=32.6
Q ss_pred eeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013189 185 LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 185 ~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~ 247 (448)
+++.+++|+|||...+-.+...+ +. +..+++++ +.+...++.+.+..+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~~------------g~~v~~~s-~e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-AR------------GEPGLYVT-LEESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-HC------------CCcEEEEE-CCCCHHHHHHHHHHcC
Confidence 68999999999996554444333 21 22367664 4567778888877763
No 250
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.54 E-value=0.12 Score=55.29 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=28.4
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHH
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
....++|||||||.|.. .....+++.+..++ ... +++|.+|-+..+.
T Consensus 117 ~g~~kVIIIDEad~Lt~----~a~naLLk~LEEP~-~~~-ifILaTt~~~kll 163 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTR----EAFNALLKTLEEPP-ARV-TFVLATTEPHKFP 163 (624)
T ss_pred cCCceEEEEEChHhCCH----HHHHHHHHHhhccC-CCE-EEEEecCChhhhh
Confidence 35568999999998854 44555666665432 233 4555555544433
No 251
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.53 E-value=1 Score=43.36 Aligned_cols=161 Identities=15% Similarity=0.214 Sum_probs=83.2
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcH--HHHHHHHHHHHHhcccCCcEEEEEE
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR--ELSSQIHVEAKKFSYQTGVKVVVAY 258 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr--eLa~qi~~~~~~~~~~~~~~~~~~~ 258 (448)
.+..+++++++|+|||..+..-+. .+... .....+|-+.+. ..+.|+...+.. .++.+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~--~l~~~----------~~~v~~i~~D~~ri~~~~ql~~~~~~----~~~~~~~-- 135 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAW--QFHGK----------KKTVGFITTDHSRIGTVQQLQDYVKT----IGFEVIA-- 135 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH--HHHHc----------CCeEEEEecCCCCHHHHHHHHHHhhh----cCceEEe--
Confidence 346789999999999996654322 22111 011234444332 344444433332 2222211
Q ss_pred CCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEE
Q 013189 259 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLF 338 (448)
Q Consensus 259 gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~ 338 (448)
..+|..|.+.+..-. ....++++++|-+=++... .+.+.++...+....+ ..-.+.+
T Consensus 136 -------------------~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~--~~~l~el~~~~~~~~~-~~~~LVl 192 (270)
T PRK06731 136 -------------------VRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRA--SETVEEMIETMGQVEP-DYICLTL 192 (270)
T ss_pred -------------------cCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCC--HHHHHHHHHHHhhhCC-CeEEEEE
Confidence 134555555543211 1246789999999776421 2334444443322222 3346779
Q ss_pred eccC-ChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHH
Q 013189 339 SATF-PKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQ 395 (448)
Q Consensus 339 SAT~-~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~ 395 (448)
|||. ..++.+.++.|-. .... .-.+..+++..+.-.++.+....
T Consensus 193 ~a~~~~~d~~~~~~~f~~-----------~~~~--~~I~TKlDet~~~G~~l~~~~~~ 237 (270)
T PRK06731 193 SASMKSKDMIEIITNFKD-----------IHID--GIVFTKFDETASSGELLKIPAVS 237 (270)
T ss_pred cCccCHHHHHHHHHHhCC-----------CCCC--EEEEEeecCCCCccHHHHHHHHH
Confidence 9986 4577777776632 0111 11334556666666777776654
No 252
>PHA02533 17 large terminase protein; Provisional
Probab=95.53 E-value=0.07 Score=56.32 Aligned_cols=150 Identities=14% Similarity=0.047 Sum_probs=85.9
Q ss_pred CCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
.+.|+|+..+..+..++-.++..+=..|||.+....++...+... +..+++++|+++-|..+++.++.+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~-----------~~~v~i~A~~~~QA~~vF~~ik~~ 127 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK-----------DKNVGILAHKASMAAEVLDRTKQA 127 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC-----------CCEEEEEeCCHHHHHHHHHHHHHH
Confidence 578999999887765565677788889999987755554444221 236999999999999999988865
Q ss_pred cccCC--cEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHH
Q 013189 247 SYQTG--VKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 247 ~~~~~--~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
..... .+..+.... ...-.+.++..|.+.|-.. ....-.++.++|+||+|.+-+ +.+.+..+...
T Consensus 128 ie~~P~l~~~~i~~~~----~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~ 194 (534)
T PHA02533 128 IELLPDFLQPGIVEWN----KGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPV 194 (534)
T ss_pred HHhCHHHhhcceeecC----ccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHH
Confidence 43211 111100000 0011123444554443221 112234567899999997654 33444444444
Q ss_pred cCCCCCCCceEEEEeccC
Q 013189 325 MDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 325 l~~~~~~~~q~i~~SAT~ 342 (448)
+... ..-+++++|...
T Consensus 195 lasg--~~~r~iiiSTp~ 210 (534)
T PHA02533 195 ISSG--RSSKIIITSTPN 210 (534)
T ss_pred HHcC--CCceEEEEECCC
Confidence 4221 113466666653
No 253
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.53 E-value=0.081 Score=61.98 Aligned_cols=66 Identities=24% Similarity=0.268 Sum_probs=45.2
Q ss_pred CCCCHHHHhHhhhHhcC--CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~ 240 (448)
..+++-|+.|+..++.. +-+++.+..|+|||...- .++..+.... ...+..++.++||-.-+..+.
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~-~i~~~~~~l~--------e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFR-AVMSAVNMLP--------ESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHH-HHHHHHHHHh--------hccCceEEEEechHHHHHHHH
Confidence 36899999999998865 569999999999998632 2222221100 012345888999988776654
No 254
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.49 E-value=0.1 Score=51.28 Aligned_cols=40 Identities=28% Similarity=0.329 Sum_probs=26.2
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCC--C-eeEeccCCCCcchhh
Q 013189 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGR--D-LMACAQTGSGKTAAF 199 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~--d-~li~a~TGsGKT~~~ 199 (448)
.+|+++-.++.+.+.+... +..++ + +++.+|+|+|||...
T Consensus 18 ~~~~~~~~~~~~~~~l~~~---------------~~~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 18 STIDECILPAADKETFKSI---------------VKKGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred CcHHHhcCcHHHHHHHHHH---------------HhcCCCCeEEEeeCcCCCCHHHHH
Confidence 4677777777776665532 22332 4 445899999999853
No 255
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.47 E-value=0.048 Score=52.44 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=33.1
Q ss_pred ccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccC---ChHHHHHHHHh
Q 013189 293 VSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF---PKEIQRLASDF 353 (448)
Q Consensus 293 ~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~---~~~v~~l~~~~ 353 (448)
......+.+||||||.|...- ...+++.++.. +....+++...-+ +..+..-+.+|
T Consensus 125 ~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~----s~~trFiLIcnylsrii~pi~SRC~Kf 183 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDA-QAALRRTMEDF----SRTTRFILICNYLSRIIRPLVSRCQKF 183 (346)
T ss_pred CCCCcceEEEEechhhhhHHH-HHHHHHHHhcc----ccceEEEEEcCChhhCChHHHhhHHHh
Confidence 345677999999999986532 24566666664 3444455554443 44444444444
No 256
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.47 E-value=0.047 Score=55.59 Aligned_cols=138 Identities=13% Similarity=0.213 Sum_probs=77.8
Q ss_pred CeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHH-HHHHHHHHHHHhcccCCcEEEEEECCCC
Q 013189 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRE-LSSQIHVEAKKFSYQTGVKVVVAYGGAP 262 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptre-La~qi~~~~~~~~~~~~~~~~~~~gg~~ 262 (448)
-.++.+..|||||.+..+-++..++... ...++||+-|+.. |..-++..++......++....-....+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~----------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~ 72 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK----------KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSS 72 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC----------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCc
Confidence 3678999999999999888887776641 1245899989888 6666677776554433332111111110
Q ss_pred HHHHHHHHhcCCcEEEeCh-hHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEecc
Q 013189 263 INQQLRELERGVDILVATP-GRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 263 ~~~~~~~l~~~~~Ilv~TP-~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
. .+.....+..|++..- +...+ ......+.++.+|||..+.. +.+..++..|+.+ ...+.+++|.|
T Consensus 73 ~--~i~~~~~g~~i~f~g~~d~~~~-----ik~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~--~~~~~i~~t~N 139 (396)
T TIGR01547 73 M--EIKILNTGKKFIFKGLNDKPNK-----LKSGAGIAIIWFEEASQLTF----EDIKELIPRLRET--GGKKFIIFSSN 139 (396)
T ss_pred c--EEEecCCCeEEEeecccCChhH-----hhCcceeeeehhhhhhhcCH----HHHHHHHHHhhcc--CCccEEEEEcC
Confidence 0 0000001234554332 11111 11234479999999998743 4566666666432 22224778888
Q ss_pred CCh
Q 013189 342 FPK 344 (448)
Q Consensus 342 ~~~ 344 (448)
.+.
T Consensus 140 P~~ 142 (396)
T TIGR01547 140 PES 142 (396)
T ss_pred cCC
Confidence 654
No 257
>PRK09183 transposase/IS protein; Provisional
Probab=95.46 E-value=0.092 Score=50.23 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=18.5
Q ss_pred HhcCCCeeEeccCCCCcchhhh
Q 013189 179 SIGGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 179 i~~g~d~li~a~TGsGKT~~~~ 200 (448)
+..+.++++.+|+|+|||....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH
Confidence 4568899999999999998544
No 258
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.44 E-value=0.064 Score=57.71 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.3
Q ss_pred CeeEeccCCCCcchhhhh
Q 013189 184 DLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~l 201 (448)
.+|++++.|+|||.+..+
T Consensus 40 a~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARI 57 (709)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 489999999999987654
No 259
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.43 E-value=0.079 Score=49.42 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=26.0
Q ss_pred CeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCCh
Q 013189 297 MIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 297 ~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~ 344 (448)
..++|||||+|.+-.. -...+..+++.+.. ....+++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~---~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRA---HGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHH---cCCcEEEEeCCCCH
Confidence 4567999999987432 23445555655421 12235777777654
No 260
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.42 E-value=0.088 Score=44.01 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=13.1
Q ss_pred eeEeccCCCCcchhh
Q 013189 185 LMACAQTGSGKTAAF 199 (448)
Q Consensus 185 ~li~a~TGsGKT~~~ 199 (448)
+++.+|.|+|||...
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999954
No 261
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.42 E-value=0.1 Score=51.71 Aligned_cols=17 Identities=47% Similarity=0.571 Sum_probs=14.9
Q ss_pred CeeEeccCCCCcchhhh
Q 013189 184 DLMACAQTGSGKTAAFC 200 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~ 200 (448)
++++.+|+|+|||....
T Consensus 38 ~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVR 54 (337)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999998643
No 262
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.42 E-value=0.059 Score=55.87 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=15.6
Q ss_pred CCCeeEeccCCCCcchhhh
Q 013189 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~ 200 (448)
++-+++++|||+|||+...
T Consensus 256 g~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTA 274 (484)
T ss_pred CcEEEEECCCCccHHHHHH
Confidence 4568899999999999643
No 263
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.37 E-value=0.11 Score=54.74 Aligned_cols=39 Identities=13% Similarity=0.310 Sum_probs=24.6
Q ss_pred CCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEe
Q 013189 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~S 339 (448)
...+++||||+|+|... ....+++.+..+ +....+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~----a~naLLk~LEep-p~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH----SFNALLKTLEEP-PSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHH----HHHHHHHHHhcc-CCCeEEEEEE
Confidence 45789999999988763 334455555544 4445555543
No 264
>PTZ00146 fibrillarin; Provisional
Probab=95.31 E-value=0.98 Score=43.75 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=12.3
Q ss_pred CeeEeccCCCCcchhhhhh
Q 013189 184 DLMACAQTGSGKTAAFCFP 202 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~lp 202 (448)
+.++-.-.|+|=++.++.-
T Consensus 134 ~~VLDLGaG~G~~t~~lAd 152 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSD 152 (293)
T ss_pred CEEEEeCCcCCHHHHHHHH
Confidence 4567777788866655443
No 265
>CHL00181 cbbX CbbX; Provisional
Probab=95.30 E-value=0.13 Score=49.93 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=17.1
Q ss_pred cCCCeeEeccCCCCcchhhhh
Q 013189 181 GGRDLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~l 201 (448)
.+.++++.+++|+|||.....
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 356799999999999997643
No 266
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.28 E-value=0.17 Score=53.99 Aligned_cols=45 Identities=13% Similarity=0.319 Sum_probs=27.9
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChH
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
....+++||||+|.|.. .....+++.+..++ ... +++|.+|-+..
T Consensus 117 ~~~~kViIIDE~~~Lt~----~a~naLLKtLEepp-~~~-ifIlatt~~~k 161 (559)
T PRK05563 117 EAKYKVYIIDEVHMLST----GAFNALLKTLEEPP-AHV-IFILATTEPHK 161 (559)
T ss_pred cCCeEEEEEECcccCCH----HHHHHHHHHhcCCC-CCe-EEEEEeCChhh
Confidence 45678999999998865 34455666665543 333 34444554433
No 267
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.26 E-value=0.19 Score=59.79 Aligned_cols=66 Identities=23% Similarity=0.262 Sum_probs=45.2
Q ss_pred CCCCHHHHhHhhhHhcC--CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~ 240 (448)
..+++.|+.|+..++.. +-+++++..|+|||...- .++..+.... ...+..++.++||-.-|..+.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~l~--------~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNTLP--------ESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHhh--------cccCceEEEECCcHHHHHHHH
Confidence 35899999999999875 458999999999998632 2333221110 012345888999988776543
No 268
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.26 E-value=0.11 Score=55.35 Aligned_cols=137 Identities=18% Similarity=0.108 Sum_probs=85.9
Q ss_pred hcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccC--CcEEEEE
Q 013189 180 IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQT--GVKVVVA 257 (448)
Q Consensus 180 ~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~--~~~~~~~ 257 (448)
.+.+-.++..|==.|||.... +++..++..- .+-++++++|.+.-+..++++++.+...+ ...+..+
T Consensus 252 fkqk~tVflVPRR~GKTwivv-~iI~~ll~s~----------~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~v 320 (738)
T PHA03368 252 FRQRATVFLVPRRHGKTWFLV-PLIALALATF----------RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHV 320 (738)
T ss_pred hhccceEEEecccCCchhhHH-HHHHHHHHhC----------CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeee
Confidence 345678899999999999755 6666555321 23569999999999999999999876532 1112122
Q ss_pred ECCCCHHHHHHHHhcC--CcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceE
Q 013189 258 YGGAPINQQLRELERG--VDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQT 335 (448)
Q Consensus 258 ~gg~~~~~~~~~l~~~--~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~ 335 (448)
. |..+ .-.+.++ ..|.++|- -..+...-..+++||||||+.+-+ +.+..|+-.+. ..+.++
T Consensus 321 k-Ge~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~---~~n~k~ 383 (738)
T PHA03368 321 K-GETI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLN---QTNCKI 383 (738)
T ss_pred c-CcEE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH----HHHHHHHHHHh---ccCccE
Confidence 2 2211 0011112 24554431 011223456899999999998866 56666665553 336789
Q ss_pred EEEeccCCh
Q 013189 336 MLFSATFPK 344 (448)
Q Consensus 336 i~~SAT~~~ 344 (448)
|++|.|.+.
T Consensus 384 I~ISS~Ns~ 392 (738)
T PHA03368 384 IFVSSTNTG 392 (738)
T ss_pred EEEecCCCC
Confidence 999988643
No 269
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.24 E-value=0.031 Score=53.69 Aligned_cols=27 Identities=26% Similarity=0.204 Sum_probs=20.1
Q ss_pred HhcCCCeeEeccCCCCcchhhhhhHHH
Q 013189 179 SIGGRDLMACAQTGSGKTAAFCFPIIS 205 (448)
Q Consensus 179 i~~g~d~li~a~TGsGKT~~~~lpil~ 205 (448)
+..|.-+++.|++|+|||...+--+.+
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 446678999999999999865444443
No 270
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.23 E-value=0.11 Score=53.65 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.8
Q ss_pred eeEeccCCCCcchhhhh
Q 013189 185 LMACAQTGSGKTAAFCF 201 (448)
Q Consensus 185 ~li~a~TGsGKT~~~~l 201 (448)
+++++|.|+|||.+..+
T Consensus 43 ~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 43 YIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 79999999999997654
No 271
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.21 E-value=0.38 Score=49.05 Aligned_cols=41 Identities=20% Similarity=0.398 Sum_probs=26.2
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEecc
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
+...+++||||+|.|.. .....+++.+..+++ .. +++|.++
T Consensus 125 ~~~~kvvIIdea~~l~~----~~~~~LLk~LEep~~-~t-~~Il~t~ 165 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSI----AAFNAFLKTLEEPPP-HA-IFIFATT 165 (397)
T ss_pred cCCeEEEEEeChhhCCH----HHHHHHHHHHhcCCC-Ce-EEEEEeC
Confidence 56778999999999865 345556666655433 33 3444444
No 272
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.20 E-value=0.24 Score=54.06 Aligned_cols=68 Identities=10% Similarity=0.094 Sum_probs=36.5
Q ss_pred eChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCC-hHHHHHHHHh
Q 013189 279 ATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP-KEIQRLASDF 353 (448)
Q Consensus 279 ~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~-~~v~~l~~~~ 353 (448)
.+|..+.+.++. +.+.++|+||=+=+.... ..+...+..+.........++++|||.. ..+.+++..|
T Consensus 249 ~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d---~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 249 KDAADLRFALAA----LGDKHLVLIDTVGMSQRD---RNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred CCHHHHHHHHHH----hcCCCEEEEeCCCCCccC---HHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 356666665552 345578888877765321 2222222222212233455788888874 4455566655
No 273
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.18 E-value=0.44 Score=51.18 Aligned_cols=45 Identities=16% Similarity=0.373 Sum_probs=27.2
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChH
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
....+++||||+|+|.... ...+++.+..+ +....+|+ .+|-+..
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a----~NaLLKtLEEP-P~~~~fIL-~Ttd~~k 166 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTA----FNAMLKTLEEP-PEYLKFVL-ATTDPQK 166 (618)
T ss_pred cCCceEEEEEChhhCCHHH----HHHHHHhcccC-CCCeEEEE-EECCchh
Confidence 3567899999999987633 44455555554 34444444 4454433
No 274
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.3 Score=49.08 Aligned_cols=50 Identities=10% Similarity=0.086 Sum_probs=28.7
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHH
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
....-+|||||+|.|++..- +.+..|+..-... ..+++++.-+....+..
T Consensus 121 ~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~~---~~~v~vi~i~n~~~~~~ 170 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG-EVLYSLLRAPGEN---KVKVSIIAVSNDDKFLD 170 (366)
T ss_pred cCCeEEEEEcchhhhccccc-hHHHHHHhhcccc---ceeEEEEEEeccHHHHH
Confidence 44566899999999988543 4444444443222 34455555554444333
No 275
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.15 E-value=0.069 Score=57.09 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=15.0
Q ss_pred CeeEeccCCCCcchhhhh
Q 013189 184 DLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~l 201 (448)
-+++++|.|+|||.+..+
T Consensus 39 AyLF~GPpGvGKTTlAri 56 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARI 56 (702)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 369999999999987653
No 276
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.19 Score=53.89 Aligned_cols=41 Identities=15% Similarity=0.368 Sum_probs=26.2
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEecc
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
+...++|||||+|.|.. ..+..+++.+..++ ... +++|.+|
T Consensus 118 ~~~~kVvIIDEa~~L~~----~a~naLLk~LEepp-~~t-v~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLST----AAFNALLKTLEEPP-PHA-IFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCH----HHHHHHHHHHhcCC-CCe-EEEEEeC
Confidence 46678999999998865 44555666665543 233 4444444
No 277
>PF13173 AAA_14: AAA domain
Probab=95.11 E-value=0.21 Score=42.03 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=23.8
Q ss_pred CeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEecc
Q 013189 297 MIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 297 ~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
.-.+|+|||+|.+-+ +...+..++..- .+.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-----~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-----PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-----cCceEEEEccc
Confidence 567899999998854 456666666533 23555554433
No 278
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.01 E-value=0.56 Score=49.22 Aligned_cols=43 Identities=14% Similarity=0.281 Sum_probs=26.0
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCC
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~ 343 (448)
....+++||||+|.|.. ..+..+++.+..++ ... +++|.+|-.
T Consensus 126 ~~~~KVvIIDEa~~Ls~----~a~naLLk~LEepp-~~~-vfI~aTte~ 168 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSK----GAFNALLKTLEEPP-PHI-IFIFATTEV 168 (507)
T ss_pred cCCcEEEEEEChhhcCH----HHHHHHHHHHhhcC-CCE-EEEEEeCCh
Confidence 45678999999998865 34455555565443 333 444444543
No 279
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.00 E-value=0.13 Score=51.52 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=15.1
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
.++++.+|+|+|||...
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999864
No 280
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.96 E-value=0.25 Score=53.03 Aligned_cols=40 Identities=15% Similarity=0.311 Sum_probs=26.5
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEe
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~S 339 (448)
+..-+++||||+|.|.. .....+++.+..+++ ...+|+++
T Consensus 125 ~~~~KVvIIdEad~Lt~----~a~naLLK~LEePp~-~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLST----AAFNAFLKTLEEPPP-HAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCH----HHHHHHHHHHhCCCC-CeEEEEEe
Confidence 56678999999999865 345567777766543 34344443
No 281
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.94 E-value=0.36 Score=51.07 Aligned_cols=40 Identities=13% Similarity=0.287 Sum_probs=24.8
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEe
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~S 339 (448)
....+++||||||+|.. .....+++.+..+ +....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~----~a~naLLK~LEep-p~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSK----QSFNALLKTLEEP-PEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccH----HHHHHHHHHHhcC-CCCceEEEEE
Confidence 35678999999999865 3344555555444 4445455444
No 282
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.92 E-value=0.16 Score=51.22 Aligned_cols=39 Identities=13% Similarity=0.271 Sum_probs=24.0
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEE
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLF 338 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~ 338 (448)
....+++||||+|.|... ....+++.+..+ +....+|+.
T Consensus 117 ~~~~kviIIDEa~~l~~~----a~naLLk~lEe~-~~~~~fIl~ 155 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSRH----SFNALLKTLEEP-PQHIKFILA 155 (363)
T ss_pred cCCceEEEEEChhhcCHH----HHHHHHHHHhcC-CCCeEEEEE
Confidence 345689999999988652 334455555544 344545544
No 283
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.92 E-value=0.31 Score=53.66 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=18.6
Q ss_pred CCeeEEEEecCCccCcCCCHHHHHHHHHH
Q 013189 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
..+.+|||||+|.|... -.+.+..++..
T Consensus 868 r~v~IIILDEID~L~kK-~QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK-TQKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCcc-HHHHHHHHHHH
Confidence 45678999999999863 22344445544
No 284
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.32 Score=50.21 Aligned_cols=144 Identities=17% Similarity=0.272 Sum_probs=83.7
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHhHhh----hHhc----C----CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCC
Q 013189 150 IDLGEALNLNIRRCKYVKPTPVQRHAIP----ISIG----G----RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPR 217 (448)
Q Consensus 150 ~~l~~~l~~~l~~~~~~~pt~~Q~~~i~----~i~~----g----~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~ 217 (448)
++.+++-++.....|.....|.-.+.+. .+.. . ..+++.+|.|||||+.+.-.++.
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~------------ 561 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS------------ 561 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh------------
Confidence 5778877777777776655443333332 1111 1 35899999999999865433321
Q ss_pred CCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCC
Q 013189 218 GSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQM 297 (448)
Q Consensus 218 ~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~ 297 (448)
...|.+=|++|..-.- .+-......+.+ .+.|. .-+.
T Consensus 562 ---S~FPFvKiiSpe~miG------------------------~sEsaKc~~i~k----------~F~DA------YkS~ 598 (744)
T KOG0741|consen 562 ---SDFPFVKIISPEDMIG------------------------LSESAKCAHIKK----------IFEDA------YKSP 598 (744)
T ss_pred ---cCCCeEEEeChHHccC------------------------ccHHHHHHHHHH----------HHHHh------hcCc
Confidence 3356777777743211 111111111110 01111 1356
Q ss_pred eeEEEEecCCccCcCC-----CHHHH-HHHHHHcCCCCCCCceEEEEeccCChHHHH
Q 013189 298 IRYLALDEADRMLDMG-----FEPQI-RKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 298 v~~lVlDEah~ll~~g-----f~~~i-~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
++++|||++.+|+|+. |...+ ..++-.++..||+.++.+.|..|-..++.+
T Consensus 599 lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~ 655 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ 655 (744)
T ss_pred ceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH
Confidence 7899999999999984 54443 344445577778888888888886555443
No 285
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.85 E-value=0.55 Score=50.36 Aligned_cols=144 Identities=13% Similarity=0.087 Sum_probs=83.0
Q ss_pred CCHHHHhHhhhH---hcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013189 168 PTPVQRHAIPIS---IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 168 pt~~Q~~~i~~i---~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~ 244 (448)
|+|.=..-|..+ .+.+-.++.+|=|.|||.+..+.++ .+... .+.+++|++|...-+.++++.++
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~-~La~f-----------~Gi~IlvTAH~~~ts~evF~rv~ 237 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILA-AMISF-----------LEIDIVVQAQRKTMCLTLYNRVE 237 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHH-HHHHh-----------cCCeEEEECCChhhHHHHHHHHH
Confidence 455444444443 3556688999999999998665544 33321 12469999999999999999888
Q ss_pred HhcccCC--------cEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHH----H--H-H-hcccccCCCeeEEEEecCCc
Q 013189 245 KFSYQTG--------VKVVVAYGGAPINQQLRELERGVDILVATPGRLV----D--L-L-ERARVSLQMIRYLALDEADR 308 (448)
Q Consensus 245 ~~~~~~~--------~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~----~--~-l-~~~~~~l~~v~~lVlDEah~ 308 (448)
++....+ -++..+.||. -.|.+..|.... . + - ..+...-..+++||||||..
T Consensus 238 ~~le~lg~~~~fp~~~~iv~vkgg~------------E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAf 305 (752)
T PHA03333 238 TVVHAYQHKPWFPEEFKIVTLKGTD------------ENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAF 305 (752)
T ss_pred HHHHHhccccccCCCceEEEeeCCe------------eEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECccc
Confidence 8765221 1122222221 112222221111 0 0 0 01122334568999999998
Q ss_pred cCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccC
Q 013189 309 MLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 309 ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
+-. +.+..|+-.+.. ...+++++|.+.
T Consensus 306 I~~----~~l~aIlP~l~~---~~~k~IiISS~~ 332 (752)
T PHA03333 306 VNP----GALLSVLPLMAV---KGTKQIHISSPV 332 (752)
T ss_pred CCH----HHHHHHHHHHcc---CCCceEEEeCCC
Confidence 765 556666666632 234567777775
No 286
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.82 E-value=0.19 Score=53.07 Aligned_cols=40 Identities=13% Similarity=0.274 Sum_probs=26.0
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEe
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~S 339 (448)
....+++||||+|.|... ....+++.+..+ +....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~----a~naLLK~LEep-p~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKS----AFNAMLKTLEEP-PEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHH----HHHHHHHHHhCC-CCCEEEEEEe
Confidence 356789999999988653 344555556554 4555566554
No 287
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.81 E-value=0.16 Score=61.59 Aligned_cols=63 Identities=24% Similarity=0.288 Sum_probs=44.0
Q ss_pred CCCCHHHHhHhhhHhcCC--CeeEeccCCCCcchhhh---hhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGR--DLMACAQTGSGKTAAFC---FPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~--d~li~a~TGsGKT~~~~---lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~ 240 (448)
..+++.|+.|+..++.+. -++|++..|+|||.... -++.. +.. ..+..++.++||-.-+..+.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~-~~~-----------~~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQ-AFE-----------SEQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHH-HHH-----------hcCCeEEEEeChHHHHHHHH
Confidence 468999999999988664 47889999999998641 12222 221 12345888999977766553
No 288
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.74 E-value=0.67 Score=49.65 Aligned_cols=45 Identities=16% Similarity=0.354 Sum_probs=26.9
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChH
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
....+++||||+|+|.. .....+++.|..+ +....+| |.+|-+..
T Consensus 117 ~~~~KVvIIdev~~Lt~----~a~naLLk~LEep-p~~~~fI-l~t~~~~k 161 (576)
T PRK14965 117 RSRYKIFIIDEVHMLST----NAFNALLKTLEEP-PPHVKFI-FATTEPHK 161 (576)
T ss_pred cCCceEEEEEChhhCCH----HHHHHHHHHHHcC-CCCeEEE-EEeCChhh
Confidence 46778999999998865 3344555555554 3344344 44454433
No 289
>PHA00729 NTP-binding motif containing protein
Probab=94.73 E-value=0.29 Score=45.62 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=40.9
Q ss_pred CcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCC-CH----HHHHHHHHHcCCCCCCCceEEEEeccCChHHHH
Q 013189 274 VDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG-FE----PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 274 ~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~g-f~----~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
...++.+...|++.+....-....+.+|||||+-.-+... |. ..+..+...+ ....+++.|...-+.++..
T Consensus 59 ~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aL----rSR~~l~il~~ls~edL~~ 134 (226)
T PHA00729 59 QNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALI----RTRVSAVIFTTPSPEDLAF 134 (226)
T ss_pred CcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHH----HhhCcEEEEecCCHHHHHH
Confidence 4566666677777665322223456789999953322211 11 1222344444 2234567777776777777
Q ss_pred HHHH
Q 013189 349 LASD 352 (448)
Q Consensus 349 l~~~ 352 (448)
.++.
T Consensus 135 ~Lr~ 138 (226)
T PHA00729 135 YLRE 138 (226)
T ss_pred HHHh
Confidence 6665
No 290
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.72 E-value=0.22 Score=51.24 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=14.9
Q ss_pred CCeeEeccCCCCcchhhh
Q 013189 183 RDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~~ 200 (448)
..+++++++|+|||+...
T Consensus 96 ~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 458899999999998643
No 291
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.72 E-value=0.29 Score=48.19 Aligned_cols=36 Identities=31% Similarity=0.467 Sum_probs=27.4
Q ss_pred CCCCCHHHHhHhhhHh----cCC---CeeEeccCCCCcchhhh
Q 013189 165 YVKPTPVQRHAIPISI----GGR---DLMACAQTGSGKTAAFC 200 (448)
Q Consensus 165 ~~~pt~~Q~~~i~~i~----~g~---d~li~a~TGsGKT~~~~ 200 (448)
+..+.|+|..++..+. .++ -+++.++.|+||+....
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~ 44 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL 44 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH
Confidence 3467889998887654 343 38999999999998654
No 292
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.69 E-value=0.047 Score=53.48 Aligned_cols=62 Identities=21% Similarity=0.280 Sum_probs=45.8
Q ss_pred CCCCCCCHHHHhHhhhHhcCC-CeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHH
Q 013189 163 CKYVKPTPVQRHAIPISIGGR-DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQ 238 (448)
Q Consensus 163 ~~~~~pt~~Q~~~i~~i~~g~-d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q 238 (448)
..|..+++-|...+..+...+ ++++++.||||||+ ++-+|..+... .-++|++--|.||-.+
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT--lLNal~~~i~~------------~eRvItiEDtaELql~ 215 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT--LLNALSGFIDS------------DERVITIEDTAELQLA 215 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH--HHHHHHhcCCC------------cccEEEEeehhhhccC
Confidence 367789999999998777655 99999999999999 34444322211 1259999999998554
No 293
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.58 E-value=1.5 Score=44.79 Aligned_cols=57 Identities=7% Similarity=0.094 Sum_probs=30.9
Q ss_pred CCeeEEEEecCCccC-cCCCHHHHHHHHHHcCCCCCCCceEEEEeccCCh-HHHHHHHHh
Q 013189 296 QMIRYLALDEADRML-DMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK-EIQRLASDF 353 (448)
Q Consensus 296 ~~v~~lVlDEah~ll-~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~-~v~~l~~~~ 353 (448)
...++||||=+-++. +..-...+..++...... ...-.++.+|||... ++.+.+..|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~-~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEK-DSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCC-CCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 456789999766542 211223333334333211 122347888999866 666666555
No 294
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.54 E-value=0.091 Score=50.48 Aligned_cols=52 Identities=23% Similarity=0.329 Sum_probs=37.4
Q ss_pred CCCcCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCC-CeeEeccCCCCcchhhhhhHHHHHhhh
Q 013189 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGR-DLMACAQTGSGKTAAFCFPIISGIMRE 210 (448)
Q Consensus 139 ~~~~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~-d~li~a~TGsGKT~~~~lpil~~l~~~ 210 (448)
.+|..+.+|+++++++.+.+.+. ..+ =++|.+|||||||+. +..+++.+.+.
T Consensus 100 ~Ip~~i~~~e~LglP~i~~~~~~-------------------~~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 100 LIPSKIPTLEELGLPPIVRELAE-------------------SPRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred ccCccCCCHHHcCCCHHHHHHHh-------------------CCCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 45677889999999987776322 122 288999999999986 45666666544
No 295
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.50 E-value=0.12 Score=48.67 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=38.0
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY 248 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~ 248 (448)
.|.-+++.+++|+|||+..+-.+...+.+ +-.+++++ +.+-..|+.+.+..+..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~-------------ge~~lyvs-~ee~~~~i~~~~~~~g~ 73 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-------------GEPGIYVA-LEEHPVQVRRNMAQFGW 73 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-------------CCcEEEEE-eeCCHHHHHHHHHHhCC
Confidence 45779999999999999765555544422 12377776 56777888888887653
No 296
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.49 E-value=0.29 Score=50.96 Aligned_cols=44 Identities=11% Similarity=0.261 Sum_probs=26.0
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCCh
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~ 344 (448)
+...++|||||+|+|.. .....++..+..++ ... ++++.+|-+.
T Consensus 115 ~~~~kVvIIDE~h~Lt~----~a~~~LLk~LE~p~-~~v-v~Ilattn~~ 158 (472)
T PRK14962 115 EGKYKVYIIDEVHMLTK----EAFNALLKTLEEPP-SHV-VFVLATTNLE 158 (472)
T ss_pred cCCeEEEEEEChHHhHH----HHHHHHHHHHHhCC-CcE-EEEEEeCChH
Confidence 45678999999998854 34455566665433 222 3334445333
No 297
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.46 E-value=0.18 Score=48.87 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=16.7
Q ss_pred cCCCeeEeccCCCCcchhhh
Q 013189 181 GGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~ 200 (448)
.+.++++.+++|+|||.+..
T Consensus 57 ~~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CCceEEEEcCCCCCHHHHHH
Confidence 35689999999999998653
No 298
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.42 E-value=1.7 Score=43.78 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=15.7
Q ss_pred CCCeeEeccCCCCcchhhh
Q 013189 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~ 200 (448)
++.+++++|||+|||....
T Consensus 206 ~~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLV 224 (407)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5668999999999998543
No 299
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.40 E-value=0.14 Score=55.81 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=51.7
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
..+++-|+.++-. ...+++|.|..|||||.+.. .-+..++.... ...-++|+|+.|+..|..+.+.+..
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~-~r~ayLl~~~~--------~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLV-ARAGWLLARGQ--------AQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHH-HHHHHHHHhCC--------CCHHHeEEEeccHHHHHHHHHHHHH
Confidence 4589999999854 33568999999999999743 33334443221 1123599999999999999998876
Q ss_pred hcc
Q 013189 246 FSY 248 (448)
Q Consensus 246 ~~~ 248 (448)
...
T Consensus 264 ~lg 266 (684)
T PRK11054 264 RLG 266 (684)
T ss_pred hcC
Confidence 543
No 300
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.38 E-value=0.3 Score=45.51 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=32.2
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~ 247 (448)
.|..+++.+++|+|||...+..+.+.+. .+ -.+++++ +-+...++.+.++.+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~g------------~~~~~is-~e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR-DG------------DPVIYVT-TEESRESIIRQAAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh-cC------------CeEEEEE-ccCCHHHHHHHHHHhC
Confidence 4677999999999999865443433332 11 1355655 3445566666666553
No 301
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=94.25 E-value=0.51 Score=52.36 Aligned_cols=103 Identities=13% Similarity=0.067 Sum_probs=66.0
Q ss_pred eEEEEeccCChHHHHHHHHhhcCcEEEEeccccCccccee-EEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeC
Q 013189 334 QTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIV-QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVE 412 (448)
Q Consensus 334 q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~-q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~ 412 (448)
++.+||.|...+-.++..-|--+.+.+-. ..+..... ....+.....|..++.+-+..... ++.++||-|.
T Consensus 505 kl~GmTGTa~~e~~Ef~~iY~l~v~~iPt---~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~-----~grPvLigt~ 576 (970)
T PRK12899 505 KLAGMTGTAITESREFKEIYNLYVLQVPT---FKPCLRIDHNDEFYMTEREKYHAIVAEIASIHR-----KGNPILIGTE 576 (970)
T ss_pred hhcccCCCCHHHHHHHHHHhCCCEEECCC---CCCceeeeCCCcEecCHHHHHHHHHHHHHHHHh-----CCCCEEEEeC
Confidence 57788999866655554433222222211 11111110 112345556788777776665533 3788999999
Q ss_pred chHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHH
Q 013189 413 TKKGADALEHWLYMNGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 413 t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~ 446 (448)
|++..+.|+..|...|++...++.. +.+++..
T Consensus 577 si~~se~ls~~L~~~gi~h~vLNak--~~~~Ea~ 608 (970)
T PRK12899 577 SVEVSEKLSRILRQNRIEHTVLNAK--NHAQEAE 608 (970)
T ss_pred cHHHHHHHHHHHHHcCCcceecccc--hhhhHHH
Confidence 9999999999999999999999987 4455543
No 302
>PRK05973 replicative DNA helicase; Provisional
Probab=94.22 E-value=0.13 Score=48.40 Aligned_cols=85 Identities=13% Similarity=0.070 Sum_probs=51.3
Q ss_pred cCCCCHHHHHHHHHCCCCCCCHHHHh---------HhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCC
Q 013189 149 EIDLGEALNLNIRRCKYVKPTPVQRH---------AIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGS 219 (448)
Q Consensus 149 ~~~l~~~l~~~l~~~~~~~pt~~Q~~---------~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~ 219 (448)
.++|++.|-+.-.+-||..-+-.... ..--+..|.-++|.|++|+|||+..+-.+.+.+.+
T Consensus 22 ~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---------- 91 (237)
T PRK05973 22 NIPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---------- 91 (237)
T ss_pred CCcHHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc----------
Confidence 44566666666666677653333322 23334456678999999999999765544443321
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013189 220 RTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 220 ~~~~~~~lil~PtreLa~qi~~~~~~~~ 247 (448)
+-.++|++ .-+-..|+.+.+..+.
T Consensus 92 ---Ge~vlyfS-lEes~~~i~~R~~s~g 115 (237)
T PRK05973 92 ---GRTGVFFT-LEYTEQDVRDRLRALG 115 (237)
T ss_pred ---CCeEEEEE-EeCCHHHHHHHHHHcC
Confidence 12366664 3344577788887763
No 303
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.20 E-value=0.1 Score=60.88 Aligned_cols=123 Identities=20% Similarity=0.175 Sum_probs=76.7
Q ss_pred CCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
++|+-|..+|. ..+++++|.|.-|||||.+..-=++..+.... .--++|+|+=|+..|..+.+.+.+-
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~----------~~~~il~~tFt~~aa~e~~~ri~~~ 68 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGV----------DIDRLLVVTFTNAAAREMKERIEEA 68 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCC----------CHhhEEEEeccHHHHHHHHHHHHHH
Confidence 46899999997 36889999999999999986555555444221 1124999999999999988888764
Q ss_pred ccc-CCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCe--eEEEEecCCc
Q 013189 247 SYQ-TGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMI--RYLALDEADR 308 (448)
Q Consensus 247 ~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v--~~lVlDEah~ 308 (448)
... ..-. .......+.+..-...-|+|-..+...+-+.....-.+ .+=|+||...
T Consensus 69 l~~~~~~~-------p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 69 LQKALQQE-------PNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HHHHHhcC-------chhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 321 1000 01111222333335678899888865543322111112 3456888875
No 304
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.092 Score=52.37 Aligned_cols=104 Identities=25% Similarity=0.305 Sum_probs=58.4
Q ss_pred CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCC
Q 013189 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAP 262 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~ 262 (448)
+|+++.+|.|+|||+.. |+||. ..++...+++||.-
T Consensus 385 RNilfyGPPGTGKTm~A---------------------------------relAr-----------~SGlDYA~mTGGDV 420 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA---------------------------------RELAR-----------HSGLDYAIMTGGDV 420 (630)
T ss_pred hheeeeCCCCCCchHHH---------------------------------HHHHh-----------hcCCceehhcCCCc
Confidence 68999999999999853 23332 25677777777743
Q ss_pred HHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcC----CCHHHHHHHHHHc-CCCCCCCceEEE
Q 013189 263 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM----GFEPQIRKIVQQM-DMPPPGMRQTML 337 (448)
Q Consensus 263 ~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~----gf~~~i~~i~~~l-~~~~~~~~q~i~ 337 (448)
..--.. -|+--..|.||-.+.+-- =+|.|||||.+|.. +..+..+..++.+ -......+.+|+
T Consensus 421 APlG~q--------aVTkiH~lFDWakkS~rG----LllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivL 488 (630)
T KOG0742|consen 421 APLGAQ--------AVTKIHKLFDWAKKSRRG----LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVL 488 (630)
T ss_pred cccchH--------HHHHHHHHHHHHhhcccc----eEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEE
Confidence 211101 122223466666543221 25889999988742 2333334333333 111223456888
Q ss_pred EeccC
Q 013189 338 FSATF 342 (448)
Q Consensus 338 ~SAT~ 342 (448)
+=||.
T Consensus 489 vlAtN 493 (630)
T KOG0742|consen 489 VLATN 493 (630)
T ss_pred EeccC
Confidence 88885
No 305
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=94.02 E-value=0.47 Score=52.04 Aligned_cols=144 Identities=13% Similarity=0.145 Sum_probs=78.5
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccC----CcEEEEE
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQT----GVKVVVA 257 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~----~~~~~~~ 257 (448)
|.-+|+.-=.|.|||+..+ ..|+.++.... ..--+||||||.-.+.+ ...+|.++.... .+.|..+
T Consensus 696 GsGcILAHcMGLGKTlQVv-tflhTvL~c~k--------lg~ktaLvV~PlNt~~N-W~~EFekWm~~~e~~~~leV~eL 765 (1567)
T KOG1015|consen 696 GSGCILAHCMGLGKTLQVV-TFLHTVLLCDK--------LGFKTALVVCPLNTALN-WMNEFEKWMEGLEDDEKLEVSEL 765 (1567)
T ss_pred CcchHHHHhhcccceehhh-HHHHHHHHhhc--------cCCceEEEEcchHHHHH-HHHHHHHhcccccccccceeehh
Confidence 3346666668999999854 44444443221 11235999999987654 577888886532 2334333
Q ss_pred ECCCCHHHH---HHHHhcCCcEEEeChhHHHHHHhccc-------------ccCCCeeEEEEecCCccCcCCCHHHHHHH
Q 013189 258 YGGAPINQQ---LRELERGVDILVATPGRLVDLLERAR-------------VSLQMIRYLALDEADRMLDMGFEPQIRKI 321 (448)
Q Consensus 258 ~gg~~~~~~---~~~l~~~~~Ilv~TP~~L~~~l~~~~-------------~~l~~v~~lVlDEah~ll~~gf~~~i~~i 321 (448)
..-..+... ...+...-.|.|.-...+..+..... +--..-++||.||+|.|-.. ...+.+.
T Consensus 766 ~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNe--ksa~Ska 843 (1567)
T KOG1015|consen 766 ATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNE--KSAVSKA 843 (1567)
T ss_pred hhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccc--hHHHHHH
Confidence 222222222 23333333566665555544432111 11234689999999987543 2445555
Q ss_pred HHHcCCCCCCCceEEEEeccC
Q 013189 322 VQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 322 ~~~l~~~~~~~~q~i~~SAT~ 342 (448)
+..+ ...| -|+++.|.
T Consensus 844 m~~i----rtkR-RI~LTGTP 859 (1567)
T KOG1015|consen 844 MNSI----RTKR-RIILTGTP 859 (1567)
T ss_pred HHHH----Hhhe-eEEeecCc
Confidence 5555 2334 45566663
No 306
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.00 E-value=0.28 Score=48.08 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=18.6
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHHh
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l~ 208 (448)
++.+++.+++|+|||.... .+.+.+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 4679999999999998533 3333443
No 307
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.94 E-value=0.51 Score=45.44 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=32.2
Q ss_pred CCeeEEEEecCCccCc-CCCHHHHHHHHHHcCC--CCCCCceEEEEeccCChHHHHHHHHhh
Q 013189 296 QMIRYLALDEADRMLD-MGFEPQIRKIVQQMDM--PPPGMRQTMLFSATFPKEIQRLASDFL 354 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~--~~~~~~q~i~~SAT~~~~v~~l~~~~l 354 (448)
...+++|+|=+-++-. .....++..+...+.. .....--++.++||...+....+..|.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 4456677776665432 1233455555554420 111344588899997665555555554
No 308
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.85 E-value=1.5 Score=47.41 Aligned_cols=30 Identities=10% Similarity=0.286 Sum_probs=21.2
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCC
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMP 328 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~ 328 (448)
....+++||||||.|.. .....+++.+..+
T Consensus 119 ~~~~KViIIDEad~Lt~----~a~naLLK~LEeP 148 (620)
T PRK14948 119 QARWKVYVIDECHMLST----AAFNALLKTLEEP 148 (620)
T ss_pred cCCceEEEEECccccCH----HHHHHHHHHHhcC
Confidence 35678999999998865 3455666666554
No 309
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.84 E-value=0.53 Score=53.07 Aligned_cols=79 Identities=13% Similarity=0.228 Sum_probs=62.5
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeChhHHHHHHhcccccCCCe
Q 013189 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 223 ~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~Ilv~TP~~L~~~l~~~~~~l~~v 298 (448)
+.+++|++|+++-+..+++.++++. .++++..++|+.+..+....+. ...+|||||. ++. ..+++.++
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~--p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----iie-~GIDIp~v 731 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELV--PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----IIE-TGIDIPNA 731 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhC--CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cccccccC
Confidence 4579999999999999999998864 3578999999988765554433 2489999994 333 46789999
Q ss_pred eEEEEecCCcc
Q 013189 299 RYLALDEADRM 309 (448)
Q Consensus 299 ~~lVlDEah~l 309 (448)
.++|++.+|+.
T Consensus 732 ~~VIi~~a~~~ 742 (926)
T TIGR00580 732 NTIIIERADKF 742 (926)
T ss_pred CEEEEecCCCC
Confidence 99999999864
No 310
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.78 E-value=0.59 Score=43.80 Aligned_cols=54 Identities=7% Similarity=0.026 Sum_probs=33.7
Q ss_pred hcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013189 180 IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 180 ~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~ 247 (448)
..+.-+++.+++|+|||+..+-.+.. +.+. +.++++++ +-+-..++.+.+.++.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~------------g~~~~yi~-~e~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYG-FLQN------------GYSVSYVS-TQLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHhC------------CCcEEEEe-CCCCHHHHHHHHHHhC
Confidence 35677999999999999964333332 3221 12367777 5455566666666554
No 311
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.77 E-value=0.12 Score=50.91 Aligned_cols=66 Identities=26% Similarity=0.259 Sum_probs=42.1
Q ss_pred HHHHHCCCCCCCHHHHhHhhh-HhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHH
Q 013189 158 LNIRRCKYVKPTPVQRHAIPI-SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (448)
Q Consensus 158 ~~l~~~~~~~pt~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 236 (448)
+.+.+.|+ +++.|...+.. +..+++++++++||||||.. +-.++..+.... ...+++++-.+.||.
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~----------~~~rivtIEd~~El~ 191 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD----------PTERVFIIEDTGEIQ 191 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC----------CCceEEEEcCCCccc
Confidence 33444454 56777777764 45778999999999999964 334444332111 123578888888873
No 312
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.056 Score=54.25 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=18.8
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHHh
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l~ 208 (448)
..|+++.+|||||||+.. -.|.+++
T Consensus 226 KSNvLllGPtGsGKTlla--qTLAr~l 250 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLA--QTLARVL 250 (564)
T ss_pred cccEEEECCCCCchhHHH--HHHHHHh
Confidence 357999999999999954 3455554
No 313
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.59 E-value=0.21 Score=46.46 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=36.4
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~ 247 (448)
.|.-+++.+++|+|||...+-.+.+.+.+.+ -.+++++ +.+-..++.+.++.+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~g------------e~vlyvs-~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFG------------EKVLYVS-FEEPPEELIENMKSFG 71 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--------------EEEEE-SSS-HHHHHHHHHTTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcC------------CcEEEEE-ecCCHHHHHHHHHHcC
Confidence 4577999999999999976666666555411 1267666 4555677777777764
No 314
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.58 E-value=0.72 Score=53.26 Aligned_cols=91 Identities=13% Similarity=0.244 Sum_probs=66.6
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeChhHHHHHHhcccccCCCe
Q 013189 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 223 ~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~Ilv~TP~~L~~~l~~~~~~l~~v 298 (448)
+.+++|++|+++-+..+++.+++.. .+.++.+++|+.+..+..+.+. ...+|||||. ++. ..+++.++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~--p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----Iie-rGIDIP~v 880 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIE-TGIDIPTA 880 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC--CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hhh-cccccccC
Confidence 3579999999999999999888864 3568888999988765544333 3589999993 333 45789999
Q ss_pred eEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 299 RYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 299 ~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
++||++.+|++ +. +++..+..+.
T Consensus 881 ~~VIi~~ad~f---gl-aq~~Qr~GRv 903 (1147)
T PRK10689 881 NTIIIERADHF---GL-AQLHQLRGRV 903 (1147)
T ss_pred CEEEEecCCCC---CH-HHHHHHhhcc
Confidence 99999999864 22 4444444444
No 315
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.55 E-value=0.37 Score=45.12 Aligned_cols=53 Identities=8% Similarity=0.037 Sum_probs=32.8
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~ 247 (448)
.|.-+++.+++|+|||...+..+...+.+ +-+++++.= .+-..++.+.+.++.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-------------g~~~~y~~~-e~~~~~~~~~~~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ-------------GKKVYVITT-ENTSKSYLKQMESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC-------------CCEEEEEEc-CCCHHHHHHHHHHCC
Confidence 35668999999999998765444433321 123555543 344566677777764
No 316
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.53 E-value=0.15 Score=55.75 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=51.0
Q ss_pred CCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhh-hcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMRE-QYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~-~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
.+++-|+.++.. ....++|.|..|||||.+..- -+.+++.. +. ..-++|+|+-|+..|..+.+.+.+
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~-Ria~Li~~~~v---------~p~~IL~lTFT~kAA~em~~Rl~~ 69 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITN-KIAHLIRGCGY---------QARHIAAVTFTNKAAREMKERVAQ 69 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHH-HHHHHHHhcCC---------CHHHeeeEechHHHHHHHHHHHHH
Confidence 478999999865 345789999999999998443 33444432 21 112499999999999999999987
Q ss_pred hc
Q 013189 246 FS 247 (448)
Q Consensus 246 ~~ 247 (448)
+.
T Consensus 70 ~l 71 (672)
T PRK10919 70 TL 71 (672)
T ss_pred Hh
Confidence 64
No 317
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.53 E-value=0.096 Score=53.11 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=38.2
Q ss_pred CeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
+++++|+||||||.++++|-+... ...+||+=|--|+........++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~---------------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW---------------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC---------------CCCEEEEccchhHHHHHHHHHHHc
Confidence 578999999999999999876432 123899999999998877766654
No 318
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=93.40 E-value=0.25 Score=53.77 Aligned_cols=8 Identities=13% Similarity=0.048 Sum_probs=3.2
Q ss_pred CCCCccCC
Q 013189 29 TRSTYVPP 36 (448)
Q Consensus 29 ~~~~~~~~ 36 (448)
+.+.|+-+
T Consensus 1190 sgGGYGgg 1197 (1282)
T KOG0921|consen 1190 SGGGYGGG 1197 (1282)
T ss_pred CCCCcCCC
Confidence 33334443
No 319
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.30 E-value=1 Score=44.53 Aligned_cols=41 Identities=10% Similarity=0.179 Sum_probs=27.3
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEec
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
....+++|||+||.|.. ..-..+++-+..|+ ....+|+.|.
T Consensus 105 ~g~~KV~iI~~a~~m~~----~AaNaLLKtLEEPp-~~~~fiL~t~ 145 (325)
T PRK06871 105 QGGNKVVYIQGAERLTE----AAANALLKTLEEPR-PNTYFLLQAD 145 (325)
T ss_pred cCCceEEEEechhhhCH----HHHHHHHHHhcCCC-CCeEEEEEEC
Confidence 35678999999999976 44556666676654 4444555443
No 320
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.29 E-value=1.5 Score=44.95 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=42.1
Q ss_pred CeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEc--CcHHHHHHHHHHHHHhcccCCcEEEEEECCC
Q 013189 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA--PTRELSSQIHVEAKKFSYQTGVKVVVAYGGA 261 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~--PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~ 261 (448)
-+++++++|+|||+... -|..++... +-++++++ +.|.-+.+ .++.++...++.+...+.+.
T Consensus 102 vi~lvG~~GvGKTTtaa--KLA~~l~~~-----------G~kV~lV~~D~~R~aA~e---QLk~~a~~~~vp~~~~~~~~ 165 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCT--KLAYYYQRK-----------GFKPCLVCADTFRAGAFD---QLKQNATKARIPFYGSYTES 165 (429)
T ss_pred EEEEECCCCCCHHHHHH--HHHHHHHHC-----------CCCEEEEcCcccchhHHH---HHHHHhhccCCeEEeecCCC
Confidence 47899999999997532 222233221 11244443 34544433 33444444566665544443
Q ss_pred CHH----HHHHHHh-cCCc-EEEeChhHH
Q 013189 262 PIN----QQLRELE-RGVD-ILVATPGRL 284 (448)
Q Consensus 262 ~~~----~~~~~l~-~~~~-Ilv~TP~~L 284 (448)
... +....+. .++| |||=|||++
T Consensus 166 dp~~i~~~~l~~~~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 166 DPVKIASEGVEKFKKENFDIIIVDTSGRH 194 (429)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 321 1122222 2344 567777776
No 321
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.29 E-value=0.43 Score=49.71 Aligned_cols=150 Identities=11% Similarity=0.067 Sum_probs=85.6
Q ss_pred CCCHHHHhHhhhHhc------C----CCeeEeccCCCCcchhhh-hhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHH
Q 013189 167 KPTPVQRHAIPISIG------G----RDLMACAQTGSGKTAAFC-FPIISGIMREQYVQRPRGSRTVYPLALILAPTREL 235 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~------g----~d~li~a~TGsGKT~~~~-lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL 235 (448)
..-|+|+-++-.++. + +..+|..|-+-|||.... +.+...++... .+-...|++|+.+-
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~----------~~~~~~i~A~s~~q 130 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWR----------SGAGIYILAPSVEQ 130 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhh----------cCCcEEEEeccHHH
Confidence 467899999987772 1 357899999999998544 33333333321 22348999999999
Q ss_pred HHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhc--ccccCCCeeEEEEecCCccCcCC
Q 013189 236 SSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER--ARVSLQMIRYLALDEADRMLDMG 313 (448)
Q Consensus 236 a~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~--~~~~l~~v~~lVlDEah~ll~~g 313 (448)
+.+.++.++....... ........-.....|.+.-....+..+.. +..+-.+..+.|+||.|.....+
T Consensus 131 a~~~F~~ar~mv~~~~----------~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~ 200 (546)
T COG4626 131 AANSFNPARDMVKRDD----------DLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE 200 (546)
T ss_pred HHHhhHHHHHHHHhCc----------chhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH
Confidence 9999999887653322 00000000000011222111112222221 33455667889999999876643
Q ss_pred CHHHHHHHHHHcCCCCCCCceEEEEec
Q 013189 314 FEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 314 f~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
..+..+..-+.. .+..+++..|.
T Consensus 201 --~~~~~~~~g~~a--r~~~l~~~ITT 223 (546)
T COG4626 201 --DMYSEAKGGLGA--RPEGLVVYITT 223 (546)
T ss_pred --HHHHHHHhhhcc--CcCceEEEEec
Confidence 556666666543 33455666555
No 322
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=93.26 E-value=0.11 Score=46.82 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=30.1
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEec
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
+...+++++||.+.-++......+..++..+. ....++|+.|-
T Consensus 114 ~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~---~~g~tiIiiSH 156 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEMA---KHTSQFIVITL 156 (178)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---hCCCEEEEEEC
Confidence 35678999999999999776677777776652 22356666544
No 323
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.24 E-value=0.39 Score=43.41 Aligned_cols=103 Identities=15% Similarity=0.159 Sum_probs=56.7
Q ss_pred CeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCH
Q 013189 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPI 263 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~ 263 (448)
=.++++|..||||.-. |+++.+... .+-++++..|-..- ..+...+.-.-|..
T Consensus 6 l~~i~gpM~SGKT~eL----l~r~~~~~~---------~g~~v~vfkp~iD~-------------R~~~~~V~Sr~G~~- 58 (201)
T COG1435 6 LEFIYGPMFSGKTEEL----LRRARRYKE---------AGMKVLVFKPAIDT-------------RYGVGKVSSRIGLS- 58 (201)
T ss_pred EEEEEccCcCcchHHH----HHHHHHHHH---------cCCeEEEEeccccc-------------ccccceeeeccCCc-
Confidence 3589999999999953 333332221 12347777665331 11122222222222
Q ss_pred HHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHH
Q 013189 264 NQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 264 ~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
-.-++|-.+..+.+.+......+. +++|.||||+-+-+ ..-.++.++...
T Consensus 59 ---------~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~~~-~~v~~l~~lad~ 108 (201)
T COG1435 59 ---------SEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFFDE-ELVYVLNELADR 108 (201)
T ss_pred ---------ccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhCCH-HHHHHHHHHHhh
Confidence 145777788888888875433222 89999999995533 222334444443
No 324
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.19 E-value=0.19 Score=49.52 Aligned_cols=58 Identities=26% Similarity=0.244 Sum_probs=38.3
Q ss_pred CCHHHHhHhhhH-hcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHH
Q 013189 168 PTPVQRHAIPIS-IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (448)
Q Consensus 168 pt~~Q~~~i~~i-~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 236 (448)
+++.|...+..+ ..+.+++++++||||||... -.++..+.... ..-+++++-.+.||.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~----------~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASA----------PEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCC----------CCceEEEecCCcccc
Confidence 567777777654 46789999999999999942 23333332111 123578888888874
No 325
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=93.17 E-value=0.17 Score=55.17 Aligned_cols=69 Identities=17% Similarity=0.092 Sum_probs=50.4
Q ss_pred CCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013189 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 168 pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~ 247 (448)
+++-|+.++.. ...+++|.|..|||||.+..-=+. +++.... ....++|+|+.|+..+.++.+.+.++.
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~-~ll~~~~--------~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIA-YLIQNCG--------YKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHH-HHHHhcC--------CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 68899998864 356899999999999997544333 3443210 112349999999999999999988764
No 326
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.14 E-value=0.16 Score=47.09 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=14.2
Q ss_pred CeeEeccCCCCcchhh
Q 013189 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~li~a~TGsGKT~~~ 199 (448)
++++.+|.|+|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 5999999999999854
No 327
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.10 E-value=0.026 Score=58.99 Aligned_cols=7 Identities=29% Similarity=0.866 Sum_probs=1.9
Q ss_pred cccchhh
Q 013189 4 SWADSVS 10 (448)
Q Consensus 4 ~~~~~~~ 10 (448)
||.-...
T Consensus 460 SWk~~~~ 466 (556)
T PF05918_consen 460 SWKEAKK 466 (556)
T ss_dssp TTS----
T ss_pred eeeeccc
Confidence 6665433
No 328
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.09 E-value=0.36 Score=49.99 Aligned_cols=53 Identities=19% Similarity=0.237 Sum_probs=34.7
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~ 247 (448)
.|.-+++.+++|+|||+..+..+.. +... +.+++|++ +.+...|+...++++.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~-~a~~------------g~~vlYvs-~Ees~~qi~~ra~rlg 131 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR-LAAA------------GGKVLYVS-GEESASQIKLRAERLG 131 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH-HHhc------------CCeEEEEE-ccccHHHHHHHHHHcC
Confidence 3566899999999999964443332 2111 23477776 4566778877777764
No 329
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.07 E-value=0.2 Score=50.47 Aligned_cols=105 Identities=14% Similarity=0.199 Sum_probs=57.0
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECC
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGG 260 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg 260 (448)
.|.-+++.+++|+|||...+..+. .+... +.+++|+.- .+...|+...+.++.... ....++..
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~-~~a~~------------g~~VlYvs~-EEs~~qi~~Ra~rlg~~~--~~l~l~~e 144 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAA-RLAKR------------GGKVLYVSG-EESPEQIKLRADRLGIST--ENLYLLAE 144 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH-HHHhc------------CCeEEEEEC-CcCHHHHHHHHHHcCCCc--ccEEEEcc
Confidence 356689999999999996543332 22211 124777764 355677777776654211 11111111
Q ss_pred CCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcC------CCHHHHHHHHHH
Q 013189 261 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM------GFEPQIRKIVQQ 324 (448)
Q Consensus 261 ~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~------gf~~~i~~i~~~ 324 (448)
. ..+.+.+.+.. ...++||||+++.+... +-..+++.++..
T Consensus 145 ~------------------~le~I~~~i~~-----~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~ 191 (372)
T cd01121 145 T------------------NLEDILASIEE-----LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAE 191 (372)
T ss_pred C------------------cHHHHHHHHHh-----cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHH
Confidence 1 12233333332 35789999999987532 233555554443
No 330
>PLN03025 replication factor C subunit; Provisional
Probab=93.06 E-value=0.5 Score=46.58 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=15.1
Q ss_pred CCeeEeccCCCCcchhhh
Q 013189 183 RDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~~ 200 (448)
.++++++|.|+|||....
T Consensus 35 ~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 35 PNLILSGPPGTGKTTSIL 52 (319)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999998643
No 331
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.05 E-value=0.24 Score=53.62 Aligned_cols=113 Identities=21% Similarity=0.259 Sum_probs=66.6
Q ss_pred eeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHH
Q 013189 185 LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPIN 264 (448)
Q Consensus 185 ~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~ 264 (448)
.|+.-.-|-|||..-+.-++..=.... + .......-..||+||+--+ .|...++.+......+.+.+.+| ..
T Consensus 155 gIladd~glgkt~~ti~l~l~~~~~~~---~-~~~~~~~kttLivcp~s~~-~qW~~elek~~~~~~l~v~v~~g---r~ 226 (674)
T KOG1001|consen 155 GILADDMGLGKTVKTIALILKQKLKSK---E-EDRQKEFKTTLIVCPTSLL-TQWKTELEKVTEEDKLSIYVYHG---RT 226 (674)
T ss_pred ceEeeccccchHHHHHHHHHhcccCCc---c-hhhccccCceeEecchHHH-HHHHHHHhccCCccceEEEEecc---cc
Confidence 566777899999875433332111111 0 0001122347889998554 56666667776666677777676 12
Q ss_pred HHHHHHhcCCcEEEeChhHHHHHHhcccccCCCe--eEEEEecCCccCcC
Q 013189 265 QQLRELERGVDILVATPGRLVDLLERARVSLQMI--RYLALDEADRMLDM 312 (448)
Q Consensus 265 ~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v--~~lVlDEah~ll~~ 312 (448)
... ......|||++|++.|.. ..+..+ -.+|+||||.+-..
T Consensus 227 kd~-~el~~~dVVltTy~il~~------~~l~~i~w~Riildea~~ikn~ 269 (674)
T KOG1001|consen 227 KDK-SELNSYDVVLTTYDILKN------SPLVKIKWLRIVLDEAHTIKNK 269 (674)
T ss_pred ccc-chhcCCceEEeeHHHhhc------ccccceeEEEEEeccccccCCc
Confidence 222 223357899999998864 122223 45899999988653
No 332
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.05 E-value=0.35 Score=45.40 Aligned_cols=125 Identities=14% Similarity=0.151 Sum_probs=61.9
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEc---CcHHHHHHHHHHHHHhcccCCcEEE-E
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA---PTRELSSQIHVEAKKFSYQTGVKVV-V 256 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~---PtreLa~qi~~~~~~~~~~~~~~~~-~ 256 (448)
.|.-+++.|++|+|||...+--+++.+... +..+++++ |..+++..+...... +... .
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~------------g~~vly~s~E~~~~~~~~r~~~~~~~------~~~~~~ 73 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQ------------GKPVLFFSLEMSKEQLLQRLLASESG------ISLSKL 73 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhC------------CCceEEEeCCCCHHHHHHHHHHHhcC------CCHHHH
Confidence 566789999999999986544444444321 12377776 455555544322111 1111 1
Q ss_pred EECCCCH------HHHHHHHhcCCcEEE-----eChhHHHHHHhcccccCCCeeEEEEecCCccCcCC----CHHHHHHH
Q 013189 257 AYGGAPI------NQQLRELERGVDILV-----ATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG----FEPQIRKI 321 (448)
Q Consensus 257 ~~gg~~~------~~~~~~l~~~~~Ilv-----~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~g----f~~~i~~i 321 (448)
..+.... ......+.. ..+.| .|+..|...+..... -..+++||||=++.+.... -...+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~i~~~~~-~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~ 151 (242)
T cd00984 74 RTGSLSDEDWERLAEAIGELKE-LPIYIDDSSSLTVSDIRSRARRLKK-EHGLGLIVIDYLQLMSGSKKKGNRQQEVAEI 151 (242)
T ss_pred hcCCCCHHHHHHHHHHHHHHhc-CCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcCchhcCCCCCCCCHHHHHHHH
Confidence 1111111 011122222 23443 245556555543221 2278999999999764322 22345555
Q ss_pred HHHc
Q 013189 322 VQQM 325 (448)
Q Consensus 322 ~~~l 325 (448)
+..|
T Consensus 152 ~~~L 155 (242)
T cd00984 152 SRSL 155 (242)
T ss_pred HHHH
Confidence 5555
No 333
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.99 E-value=4.2 Score=42.61 Aligned_cols=136 Identities=16% Similarity=0.175 Sum_probs=89.8
Q ss_pred EeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHH
Q 013189 187 ACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQ 266 (448)
Q Consensus 187 i~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~ 266 (448)
-+-..++||+..-++.+.+.+-.. -.|-+||.+-+.+-|.|++.++.. ..++++.+++|..+..+.
T Consensus 362 ~QelvF~gse~~K~lA~rq~v~~g-----------~~PP~lIfVQs~eRak~L~~~L~~---~~~i~v~vIh~e~~~~qr 427 (593)
T KOG0344|consen 362 DQELVFCGSEKGKLLALRQLVASG-----------FKPPVLIFVQSKERAKQLFEELEI---YDNINVDVIHGERSQKQR 427 (593)
T ss_pred hhhheeeecchhHHHHHHHHHhcc-----------CCCCeEEEEecHHHHHHHHHHhhh---ccCcceeeEecccchhHH
Confidence 334467888888777666654332 346689999999999999999983 357899999999776655
Q ss_pred HHHHhc----CCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccC
Q 013189 267 LRELER----GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 267 ~~~l~~----~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
...+.+ ...||||| +++.++ +++..+.+||-++.-.- -...+.+| .......+...-+.+++-+=
T Consensus 428 de~~~~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~s----~~syihrI-GRtgRag~~g~Aitfytd~d 496 (593)
T KOG0344|consen 428 DETMERFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQS----DLSYIHRI-GRTGRAGRSGKAITFYTDQD 496 (593)
T ss_pred HHHHHHHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCch----hHHHHHHh-hccCCCCCCcceEEEecccc
Confidence 444433 37999999 566665 78999999999766421 11334444 44433334444456666653
Q ss_pred ChHHH
Q 013189 343 PKEIQ 347 (448)
Q Consensus 343 ~~~v~ 347 (448)
-+.+.
T Consensus 497 ~~~ir 501 (593)
T KOG0344|consen 497 MPRIR 501 (593)
T ss_pred chhhh
Confidence 33333
No 334
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.90 E-value=0.14 Score=49.67 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=15.5
Q ss_pred CCCeeEeccCCCCcchhhh
Q 013189 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~ 200 (448)
++.+++++|||+|||+...
T Consensus 194 ~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998643
No 335
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=92.89 E-value=0.23 Score=54.72 Aligned_cols=72 Identities=17% Similarity=0.126 Sum_probs=53.2
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
..+++-|++++.. ....++|.|..|||||.+. .--+.+++.... ...-++|+|+-|+..|..+.+.+.+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L-~~Ria~Li~~~~--------v~p~~IL~lTFTnkAA~em~~Rl~~ 71 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVL-THRIAWLLSVEN--------ASPHSIMAVTFTNKAAAEMRHRIGA 71 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHcCC--------CCHHHeEeeeccHHHHHHHHHHHHH
Confidence 4589999999865 3458999999999999974 333444443211 1123499999999999999999988
Q ss_pred hcc
Q 013189 246 FSY 248 (448)
Q Consensus 246 ~~~ 248 (448)
+..
T Consensus 72 ~~~ 74 (715)
T TIGR01075 72 LLG 74 (715)
T ss_pred Hhc
Confidence 753
No 336
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.88 E-value=0.15 Score=53.22 Aligned_cols=50 Identities=26% Similarity=0.348 Sum_probs=39.9
Q ss_pred CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013189 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~ 247 (448)
.+++++|+||||||..|.+|.|-.. . .-+||+=|--||.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~---~------------~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY---P------------GSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc---c------------CCEEEEECCCcHHHHHHHHHHHCC
Confidence 5799999999999999999976321 1 138999999999988887777654
No 337
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.88 E-value=0.31 Score=43.93 Aligned_cols=39 Identities=21% Similarity=0.437 Sum_probs=25.8
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEE
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLF 338 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~ 338 (448)
....+++||||+|.|.. +....++..+..+++ ..-+|++
T Consensus 94 ~~~~kviiide~~~l~~----~~~~~Ll~~le~~~~-~~~~il~ 132 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE----AAANALLKTLEEPPP-NTLFILI 132 (188)
T ss_pred cCCeEEEEEechhhhCH----HHHHHHHHHhcCCCC-CeEEEEE
Confidence 46678999999999865 445567777766443 3334443
No 338
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.83 E-value=0.27 Score=50.05 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=32.5
Q ss_pred CCCCcccCCCCHHHHHHHHHC---CCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhh
Q 013189 143 AVNTFAEIDLGEALNLNIRRC---KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 143 ~~~~f~~~~l~~~l~~~l~~~---~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 199 (448)
|..+|.+++--+...+.+++. .+..|.-++..-+ ...+.+++.+|+|+|||+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI---DPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHHH
Confidence 345688886555555544432 2333333333322 23578999999999999954
No 339
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.81 E-value=0.6 Score=47.89 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=14.8
Q ss_pred CeeEeccCCCCcchhhh
Q 013189 184 DLMACAQTGSGKTAAFC 200 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~ 200 (448)
.+++.+|+|+|||....
T Consensus 38 ~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 38 SMILWGPPGTGKTTLAR 54 (413)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999998643
No 340
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.79 E-value=0.22 Score=46.22 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=22.2
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
-..-+.+||||||.|.+ |-...+++.++..
T Consensus 111 ~grhKIiILDEADSMT~-gAQQAlRRtMEiy 140 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTA-GAQQALRRTMEIY 140 (333)
T ss_pred CCceeEEEeeccchhhh-HHHHHHHHHHHHH
Confidence 36778899999998865 4556677766655
No 341
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=92.78 E-value=1.2 Score=43.36 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=23.1
Q ss_pred chHHHHHHHHHHHHCCCCeEEecCCCCH
Q 013189 413 TKKGADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 413 t~~~a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
|+-.|+.|++.| ..++.|...|-++..
T Consensus 259 SV~~~e~l~~~l-~~~~~v~~~Hrd~~~ 285 (288)
T PRK05416 259 SVAIAERLAERL-SKGYNVQVRHRDLER 285 (288)
T ss_pred HHHHHHHHHHHH-hCCCcEEEEeCcccc
Confidence 477899999999 468999999999864
No 342
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.77 E-value=0.5 Score=49.59 Aligned_cols=93 Identities=18% Similarity=0.190 Sum_probs=56.7
Q ss_pred cCCCCHH-HHHHHHHCCCCCCCH----HHHhHhhhHh--cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCC
Q 013189 149 EIDLGEA-LNLNIRRCKYVKPTP----VQRHAIPISI--GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRT 221 (448)
Q Consensus 149 ~~~l~~~-l~~~l~~~~~~~pt~----~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 221 (448)
+.++.++ |...|.+.-=.++.. +|++==.+|. .++-++|++..|||||.+.+-=+-..++... ++..
T Consensus 186 d~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R------~~l~ 259 (747)
T COG3973 186 DTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYR------GPLQ 259 (747)
T ss_pred CCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccc------cccc
Confidence 3444444 445666554444443 3554444444 3456999999999999985432221122211 2222
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcc
Q 013189 222 VYPLALILAPTRELSSQIHVEAKKFSY 248 (448)
Q Consensus 222 ~~~~~lil~PtreLa~qi~~~~~~~~~ 248 (448)
.+| +||+.|.+-+..-|.+++-.++.
T Consensus 260 ~k~-vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 260 AKP-VLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred cCc-eEEEcCcHHHHHHHHHhchhhcc
Confidence 223 99999999999999999988764
No 343
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.73 E-value=1 Score=44.87 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=26.6
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEec
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
....+++|||+||+|.. ..-..+++.+..|+ ...-+|++|.
T Consensus 130 ~~~~kV~iI~~ae~m~~----~AaNaLLKtLEEPp-~~t~fiL~t~ 170 (342)
T PRK06964 130 RGGARVVVLYPAEALNV----AAANALLKTLEEPP-PGTVFLLVSA 170 (342)
T ss_pred cCCceEEEEechhhcCH----HHHHHHHHHhcCCC-cCcEEEEEEC
Confidence 45678999999999966 44455666666654 3343444443
No 344
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.67 E-value=0.33 Score=49.31 Aligned_cols=47 Identities=19% Similarity=0.421 Sum_probs=27.6
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHH
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
....+++||||+|+|... ....+++.+..++ ... ++++.||-+..+.
T Consensus 115 ~~~~kViiIDead~m~~~----aanaLLk~LEep~-~~~-~fIL~a~~~~~ll 161 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER----AANALLKAVEEPP-PRT-VWLLCAPSPEDVL 161 (394)
T ss_pred cCCcEEEEEechhhcCHH----HHHHHHHHhhcCC-CCC-eEEEEECChHHCh
Confidence 356789999999999652 2344555555543 334 4445555444443
No 345
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.67 E-value=1.2 Score=40.43 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=37.8
Q ss_pred CCCeeEEEEecCCccCcCCC--HHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHH
Q 013189 295 LQMIRYLALDEADRMLDMGF--EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASD 352 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf--~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~ 352 (448)
-..+++|||||+=..++.|+ .+++..+++.. |...-+|+..-..|+++.+++..
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~r----p~~~evVlTGR~~p~~Lie~ADl 168 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNAR----PGMQHVVITGRGAPRELIEAADL 168 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcC----CCCCEEEEECCCCCHHHHHhCch
Confidence 46789999999999888885 33454555443 55566777667778888776653
No 346
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.66 E-value=0.97 Score=48.75 Aligned_cols=42 Identities=12% Similarity=0.335 Sum_probs=27.3
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccC
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
+...+++||||+|.|.. .....+++.+..++ ... +++|.+|-
T Consensus 119 ~~~~KVvIIdea~~Ls~----~a~naLLK~LEepp-~~t-ifIL~tt~ 160 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQ----AAFNAFLKTLEEPP-SYA-IFILATTE 160 (614)
T ss_pred cCCcEEEEEECcccCCH----HHHHHHHHHHhCCC-CCe-EEEEEeCC
Confidence 56788999999999865 44556666666543 333 44455553
No 347
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.65 E-value=0.63 Score=51.06 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.2
Q ss_pred CCeeEeccCCCCcchhhh
Q 013189 183 RDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~~ 200 (448)
.++++.+|+|+|||....
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 369999999999998643
No 348
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.64 E-value=0.029 Score=47.90 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=13.9
Q ss_pred CeeEeccCCCCcchhh
Q 013189 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~li~a~TGsGKT~~~ 199 (448)
++++.+++|+|||...
T Consensus 1 ~vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4899999999999853
No 349
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=92.62 E-value=0.13 Score=54.63 Aligned_cols=125 Identities=17% Similarity=0.180 Sum_probs=70.9
Q ss_pred CCCHHHHhHhhhHhcC--CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH-HHH
Q 013189 167 KPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH-VEA 243 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~-~~~ 243 (448)
.-+|+|.+.+..+... +.|+++.++-+|||.+.+. ++-..+...+ .-+|++.||.++|.+.. +.+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n-~~g~~i~~~P-----------~~~l~v~Pt~~~a~~~~~~rl 83 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLN-WIGYSIDQDP-----------GPMLYVQPTDDAAKDFSKERL 83 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHh-hceEEEEeCC-----------CCEEEEEEcHHHHHHHHHHHH
Confidence 5789999998887643 5789999999999995443 3333333221 23899999999998875 444
Q ss_pred HHhcccCC-cEEEEEEC----CCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCc
Q 013189 244 KKFSYQTG-VKVVVAYG----GAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD 311 (448)
Q Consensus 244 ~~~~~~~~-~~~~~~~g----g~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~ 311 (448)
..+...+. ++- .+.. ........+.+. +-.|.++.-+. -..+.-..+++|++||+|.+-.
T Consensus 84 ~Pmi~~sp~l~~-~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S------~~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 84 DPMIRASPVLRR-KLSPSKSRDSGNTILYKRFP-GGFLYLVGANS------PSNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred HHHHHhCHHHHH-HhCchhhcccCCchhheecC-CCEEEEEeCCC------CcccccCCcCEEEEechhhccc
Confidence 44432211 110 1111 000011111111 23343333211 1123456789999999999843
No 350
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.59 E-value=0.87 Score=40.05 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=38.4
Q ss_pred CCCeeEEEEecCCccCcCCC--HHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHH
Q 013189 295 LQMIRYLALDEADRMLDMGF--EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS 351 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf--~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~ 351 (448)
...+++|||||+=..+..++ .+.+..+++.. |...-+|+.+-..|+++.+++.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r----p~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAK----PEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC----CCCCEEEEECCCCCHHHHHhCc
Confidence 56789999999998877774 34555555544 5556677777788888887664
No 351
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.59 E-value=0.85 Score=47.76 Aligned_cols=41 Identities=17% Similarity=0.404 Sum_probs=25.1
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEecc
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
....+++||||||.|.. .....++..+..+++ .. ++++.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~----~a~naLLk~LEepp~-~~-v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTK----EAFNALLKTLEEPPP-RT-IFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCH----HHHHHHHHHHhcCCC-Ce-EEEEEEC
Confidence 45678999999998865 334455666655433 33 3444444
No 352
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.53 E-value=0.84 Score=47.99 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=21.6
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCC
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMP 328 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~ 328 (448)
+...++|||||+|.|.. ..+..++..+..+
T Consensus 114 ~~~~kVVIIDEad~ls~----~a~naLLk~LEep 143 (504)
T PRK14963 114 RGGRKVYILDEAHMMSK----SAFNALLKTLEEP 143 (504)
T ss_pred cCCCeEEEEECccccCH----HHHHHHHHHHHhC
Confidence 46678999999998754 4556666666554
No 353
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.45 E-value=3.5 Score=39.17 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=22.8
Q ss_pred CCCHHHHhHhhhHh----cCC-CeeEeccCCCCcchhhh
Q 013189 167 KPTPVQRHAIPISI----GGR-DLMACAQTGSGKTAAFC 200 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~----~g~-d~li~a~TGsGKT~~~~ 200 (448)
-+++.++.++..+. .+. .+++.+++|+|||+...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 35555666665442 233 58899999999998643
No 354
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.44 E-value=0.17 Score=53.56 Aligned_cols=31 Identities=29% Similarity=0.306 Sum_probs=23.4
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+++-+++|+||+---+|..-+..+.+.+..+
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 6777889999999888866666666666554
No 355
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=92.43 E-value=1.5 Score=42.15 Aligned_cols=243 Identities=19% Similarity=0.267 Sum_probs=110.6
Q ss_pred eeEeccCCCCcchhhhh--------------hHHHHHhhhhcccCCCCCCCCCceEEEE-cCcHHHHHHHHHHHHHhccc
Q 013189 185 LMACAQTGSGKTAAFCF--------------PIISGIMREQYVQRPRGSRTVYPLALIL-APTRELSSQIHVEAKKFSYQ 249 (448)
Q Consensus 185 ~li~a~TGsGKT~~~~l--------------pil~~l~~~~~~~~~~~~~~~~~~~lil-~PtreLa~qi~~~~~~~~~~ 249 (448)
+||.+-.|+|||.|.-. .++..+...-.. ........||++ +-++....++.+.+..+...
T Consensus 4 vIiTGlSGaGKs~Al~~lED~Gy~cvDNlP~~Ll~~l~~~~~~----~~~~~~~~Ai~iD~R~~~~~~~~~~~~~~l~~~ 79 (284)
T PF03668_consen 4 VIITGLSGAGKSTALRALEDLGYYCVDNLPPSLLPQLIELLAQ----SNSKIEKVAIVIDIRSREFFEDLFEALDELRKK 79 (284)
T ss_pred EEEeCCCcCCHHHHHHHHHhcCeeEEcCCcHHHHHHHHHHHHh----cCCCCceEEEEEeCCChHHHHHHHHHHHHHHhc
Confidence 68999999999987411 112222111100 001112234443 44555555666666555433
Q ss_pred CCcEEEEEECCCCHHHHHHHHh--cCCcEEEeChhHHHHHHhcccc---cCCCeeEEEEecCCccCcCCCHHHHHHHHHH
Q 013189 250 TGVKVVVAYGGAPINQQLRELE--RGVDILVATPGRLVDLLERARV---SLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 250 ~~~~~~~~~gg~~~~~~~~~l~--~~~~Ilv~TP~~L~~~l~~~~~---~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
++.+.+++-..+...-.+... +..|=+- ..+.+++-++..+. .+....-+|||=-+.- ..+++..+..
T Consensus 80 -~~~~~ilFLdA~d~~LirRy~eTRR~HPL~-~~~~~le~I~~Er~~L~~lr~~Ad~vIDTs~l~-----~~~Lr~~i~~ 152 (284)
T PF03668_consen 80 -GIDVRILFLDASDEVLIRRYSETRRRHPLS-SDGSLLEAIEKERELLEPLRERADLVIDTSNLS-----VHQLRERIRE 152 (284)
T ss_pred -CCceEEEEEECChHHHHHHHHhccCCCCCC-CCCCcHHHHHHHHHHHHHHHHhCCEEEECCCCC-----HHHHHHHHHH
Confidence 566666665555443333322 2233322 22334444433221 2444455777755421 2344444433
Q ss_pred -cCCCCCCCceEEEEeccC----ChHHHHHH-HHhhcCcEEEEeccccCcccceeEEEEEecc-----cchHHHHHHHHH
Q 013189 325 -MDMPPPGMRQTMLFSATF----PKEIQRLA-SDFLANYIFLAVGRVGSSTDLIVQRVEFVHE-----SDKRSHLMDLLH 393 (448)
Q Consensus 325 -l~~~~~~~~q~i~~SAT~----~~~v~~l~-~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~-----~~k~~~L~~ll~ 393 (448)
+........++.++|--+ |.+..-+. -.|+.||.++..-+.-.-.+.-.+.|..-.+ .++...+++.+-
T Consensus 153 ~~~~~~~~~l~v~i~SFGfK~GiP~dAD~VfDvRfLpNP~y~~~Lr~lTG~D~~V~~yv~~~~~~~~f~~~~~~~l~~~l 232 (284)
T PF03668_consen 153 RFGGDKESRLTVTIQSFGFKYGIPPDADLVFDVRFLPNPYYVPELRPLTGLDKPVQDYVLSDPEAQEFLEKIEDLLDFLL 232 (284)
T ss_pred HhccCCCCceEEEEEEeccccCCCCCCCEEEEcCcCCCCCCChhhhhcCCCChHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence 222223345565666544 32211000 0145555443222111111111111111111 122222333222
Q ss_pred HHHhcCCCCCCccEEEEe------CchHHHHHHHHHHHHCCCCeEEecCCCCH
Q 013189 394 AQVANGVHGKQALTLVFV------ETKKGADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 394 ~~~~~~~~~~~~~~IIF~------~t~~~a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
.... ..++...+|-+. .|+..|+.|++.|...++.+...|-++..
T Consensus 233 p~y~--~egk~~ltIaiGCTGG~HRSV~iae~La~~L~~~~~~v~v~HRdl~k 283 (284)
T PF03668_consen 233 PRYE--KEGKSYLTIAIGCTGGQHRSVAIAERLAERLREKGYTVVVRHRDLEK 283 (284)
T ss_pred HHHH--hcCCceEEEEEEcCCCcCcHHHHHHHHHHHHHhcCCcceEEcCCCCC
Confidence 2221 122334455554 34789999999999999999999998864
No 356
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=92.40 E-value=1.3 Score=46.93 Aligned_cols=130 Identities=17% Similarity=0.147 Sum_probs=84.8
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccC-CcE-EEEEE
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQT-GVK-VVVAY 258 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~-~~~-~~~~~ 258 (448)
+.+-.++.-|--.|||. |+.||+..++.. ..+.++.|++.-+.-++-+++++..-+..+ +-+ +...
T Consensus 201 KQkaTVFLVPRRHGKTW-f~VpiIsllL~s----------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~- 268 (668)
T PHA03372 201 KQKATVFLVPRRHGKTW-FIIPIISFLLKN----------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN- 268 (668)
T ss_pred hccceEEEecccCCcee-hHHHHHHHHHHh----------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee-
Confidence 34556788899999998 588999988864 335679999999999888888876433221 111 1111
Q ss_pred CCCCHHHHHHHHhcCCcEEEeChhHHHH-----HHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCc
Q 013189 259 GGAPINQQLRELERGVDILVATPGRLVD-----LLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMR 333 (448)
Q Consensus 259 gg~~~~~~~~~l~~~~~Ilv~TP~~L~~-----~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~ 333 (448)
++--|.+.-||.=-. -...+.+.-++..+|+|||||-+-. +.+..|+-.+. .+++
T Consensus 269 -------------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~----~a~~tilgfm~---q~~~ 328 (668)
T PHA03372 269 -------------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK----DAFNTILGFLA---QNTT 328 (668)
T ss_pred -------------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH----HHHHHhhhhhc---ccCc
Confidence 112355555543211 1122344567889999999997644 56667777763 4567
Q ss_pred eEEEEeccC
Q 013189 334 QTMLFSATF 342 (448)
Q Consensus 334 q~i~~SAT~ 342 (448)
.+|..|.|-
T Consensus 329 KiIfISS~N 337 (668)
T PHA03372 329 KIIFISSTN 337 (668)
T ss_pred eEEEEeCCC
Confidence 788888884
No 357
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=92.38 E-value=2.3 Score=46.09 Aligned_cols=79 Identities=23% Similarity=0.269 Sum_probs=56.4
Q ss_pred CceEEEEcCcHH--------HHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh---c-CCcEEEeChhHHHHHHhc
Q 013189 223 YPLALILAPTRE--------LSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLER 290 (448)
Q Consensus 223 ~~~~lil~Ptre--------La~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~TP~~L~~~l~~ 290 (448)
+.+++|+||+.+ -+.++++.+.+.. .++++..++|+.+..+....+. . ..+|||||. .+ .
T Consensus 448 g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~--~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vi-e 519 (630)
T TIGR00643 448 GRQAYVVYPLIEESEKLDLKAAEALYERLKKAF--PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----VI-E 519 (630)
T ss_pred CCcEEEEEccccccccchHHHHHHHHHHHHhhC--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----ee-e
Confidence 356999999863 3445566665532 4678999999988766554433 2 489999994 22 3
Q ss_pred ccccCCCeeEEEEecCCcc
Q 013189 291 ARVSLQMIRYLALDEADRM 309 (448)
Q Consensus 291 ~~~~l~~v~~lVlDEah~l 309 (448)
..+++.+++++|+..+++.
T Consensus 520 ~GvDiP~v~~VIi~~~~r~ 538 (630)
T TIGR00643 520 VGVDVPNATVMVIEDAERF 538 (630)
T ss_pred cCcccCCCcEEEEeCCCcC
Confidence 4678999999999999864
No 358
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.33 E-value=0.24 Score=52.01 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=15.0
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
+.+++.+|+|+|||+..
T Consensus 89 ~giLL~GppGtGKT~la 105 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999953
No 359
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.30 E-value=0.83 Score=48.71 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=27.1
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCC
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~ 343 (448)
....+++||||+|.|.. .....+++.+..++ ... +++|.+|-+
T Consensus 117 ~~~~KVvIIDEa~~Ls~----~a~naLLK~LEepp-~~~-vfI~~tte~ 159 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSN----SAFNALLKTIEEPP-PYI-VFIFATTEV 159 (563)
T ss_pred cCCCEEEEEEChhhcCH----HHHHHHHHhhccCC-CCE-EEEEecCCh
Confidence 46778999999998865 34555666665543 333 444544533
No 360
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=92.29 E-value=0.32 Score=53.67 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=52.7
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
..++|-|++++... ...++|.|..|||||.+.. --+.+++.... ...-.+|+|+-|+..|..+.+.+.+
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~-~Ria~Li~~~~--------v~p~~IL~lTFT~kAA~Em~~Rl~~ 76 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLV-HRIAWLMQVEN--------ASPYSIMAVTFTNKAAAEMRHRIEQ 76 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHH-HHHHHHHHcCC--------CChhHeEeeeccHHHHHHHHHHHHH
Confidence 35899999998643 4589999999999999743 33334443210 1112499999999999999999988
Q ss_pred hcc
Q 013189 246 FSY 248 (448)
Q Consensus 246 ~~~ 248 (448)
+..
T Consensus 77 ~~~ 79 (721)
T PRK11773 77 LLG 79 (721)
T ss_pred Hhc
Confidence 753
No 361
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.26 E-value=0.38 Score=42.47 Aligned_cols=44 Identities=18% Similarity=0.425 Sum_probs=25.9
Q ss_pred CCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChH
Q 013189 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
...+++||||||.|.. +.-..+++.|..+ +....+|++| +-+..
T Consensus 101 ~~~KviiI~~ad~l~~----~a~NaLLK~LEep-p~~~~fiL~t-~~~~~ 144 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE----EAQNALLKTLEEP-PENTYFILIT-NNPSK 144 (162)
T ss_dssp SSSEEEEEETGGGS-H----HHHHHHHHHHHST-TTTEEEEEEE-S-GGG
T ss_pred CCceEEEeehHhhhhH----HHHHHHHHHhcCC-CCCEEEEEEE-CChHH
Confidence 5789999999999866 3344444455444 4455455544 43433
No 362
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.25 E-value=0.23 Score=53.23 Aligned_cols=49 Identities=20% Similarity=0.099 Sum_probs=40.9
Q ss_pred CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
++++++||||||||..|++|-|-.+- ..+||+=|--|+........+++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~---------------~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE---------------DSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC---------------CCEEEEeCcHHHHHHHHHHHHHC
Confidence 57999999999999999999875431 13899999999998888877775
No 363
>PTZ00146 fibrillarin; Provisional
Probab=92.18 E-value=0.31 Score=47.18 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=21.3
Q ss_pred CCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhh
Q 013189 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 199 (448)
.|-.-+|++.+.--.|+.+-+.+-. .-|.+..+
T Consensus 106 eyR~w~p~rSKlaa~i~~g~~~l~I---kpG~~VLD 138 (293)
T PTZ00146 106 EYRVWNPFRSKLAAAIIGGVANIPI---KPGSKVLY 138 (293)
T ss_pred eeeeeCCcccHHHHHHHCCcceecc---CCCCEEEE
Confidence 3566778888888888888776532 23455543
No 364
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.17 E-value=0.86 Score=48.09 Aligned_cols=40 Identities=13% Similarity=0.378 Sum_probs=26.2
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEe
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~S 339 (448)
+...+++||||||.|.. +....+++.+..+ +....+|+++
T Consensus 115 ~~~~KVvIIDEad~Lt~----~A~NALLK~LEEp-p~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTK----EAFNALLKTLEEP-PSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCH----HHHHHHHHHHhhc-CCceEEEEEE
Confidence 46789999999998865 3444555555554 4455555544
No 365
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.15 E-value=1.2 Score=47.45 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=15.2
Q ss_pred CeeEeccCCCCcchhhhh
Q 013189 184 DLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~l 201 (448)
-+++++|.|+|||..+..
T Consensus 40 A~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488999999999997654
No 366
>PHA02244 ATPase-like protein
Probab=92.14 E-value=1.1 Score=44.87 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=19.0
Q ss_pred hhHhcCCCeeEeccCCCCcchhh
Q 013189 177 PISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 177 ~~i~~g~d~li~a~TGsGKT~~~ 199 (448)
..+..+.++++.+|||+|||...
T Consensus 114 r~l~~~~PVLL~GppGtGKTtLA 136 (383)
T PHA02244 114 KIVNANIPVFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHhcCCCEEEECCCCCCHHHHH
Confidence 34557889999999999999854
No 367
>PRK04195 replication factor C large subunit; Provisional
Probab=92.12 E-value=0.77 Score=48.08 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=15.6
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
.+.+++.+|+|+|||...
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999854
No 368
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.11 E-value=1.6 Score=38.62 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=29.5
Q ss_pred CCeeEEEEecCCccC-cCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhh
Q 013189 296 QMIRYLALDEADRML-DMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL 354 (448)
Q Consensus 296 ~~v~~lVlDEah~ll-~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l 354 (448)
...+++|+|....+. +......+..+.... ....-++.++|....+..+.+..+.
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~----~~~~~~lVv~~~~~~~~~~~~~~~~ 136 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVV----KPDEVLLVVDAMTGQDAVNQAKAFN 136 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhc----CCCeEEEEEECCCChHHHHHHHHHH
Confidence 456778899887642 211223333333222 2344567777776666656555554
No 369
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.08 E-value=0.41 Score=54.01 Aligned_cols=153 Identities=18% Similarity=0.143 Sum_probs=87.4
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhccc-----CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEE
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQ-----RPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVV 255 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~-----~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~ 255 (448)
.|++++..-..|+|||.+-+.-.+...-+..... ...........+|||||.--| .|.++++.+-+... +++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl-~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAIL-MQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHH-HHHHHHHHHhcccc-ceEE
Confidence 3566788888999999987665554422111100 001112234558999998555 78899998765443 6777
Q ss_pred EEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhccc--------------c----cCCCeeE--EEEecCCccCcCCCH
Q 013189 256 VAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR--------------V----SLQMIRY--LALDEADRMLDMGFE 315 (448)
Q Consensus 256 ~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~--------------~----~l~~v~~--lVlDEah~ll~~gf~ 315 (448)
...|=..........-..+|||++|...|..-+.... . .|-.|.+ ++||||..+ +. -.
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMv-es-ss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMV-ES-SS 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhh-cc-hH
Confidence 6655332221111222248999999999976653220 1 1222322 799999955 32 23
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEeccC
Q 013189 316 PQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 316 ~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
....+.+..| + ..-.-++|.|.
T Consensus 529 S~~a~M~~rL----~-~in~W~VTGTP 550 (1394)
T KOG0298|consen 529 SAAAEMVRRL----H-AINRWCVTGTP 550 (1394)
T ss_pred HHHHHHHHHh----h-hhceeeecCCc
Confidence 4445555555 1 12256778884
No 370
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.02 E-value=0.35 Score=47.30 Aligned_cols=58 Identities=26% Similarity=0.386 Sum_probs=36.9
Q ss_pred CCHHHHhHhhh-HhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHH
Q 013189 168 PTPVQRHAIPI-SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (448)
Q Consensus 168 pt~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 236 (448)
+++.|...+.. +..+++++++++||||||... -.++..+.... ..-+++++-.+.||.
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~----------~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKND----------PTDRVVIIEDTRELQ 175 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccC----------CCceEEEECCchhhc
Confidence 45556666554 446789999999999999953 22333332110 123588888888874
No 371
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=91.99 E-value=2.6 Score=42.32 Aligned_cols=110 Identities=18% Similarity=0.251 Sum_probs=63.1
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCC
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGA 261 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~ 261 (448)
.+-+.+.++.|+|||... -+ ++..-+..+ +.+ ++.-+...++++.+.++. ++.
T Consensus 62 ~~GlYl~G~vG~GKT~Lm--d~---f~~~lp~~~-------k~R----~HFh~Fm~~vh~~l~~~~-----------~~~ 114 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLM--DL---FYDSLPIKR-------KRR----VHFHEFMLDVHSRLHQLR-----------GQD 114 (362)
T ss_pred CceEEEECCCCCchhHHH--HH---HHHhCCccc-------ccc----ccccHHHHHHHHHHHHHh-----------CCC
Confidence 467999999999999932 22 222111100 001 244577888888888863 111
Q ss_pred -CHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEec
Q 013189 262 -PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 262 -~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
++.. +.+.+ .+...+|+|||.|. -|.+=.-.+..++..+- ....-+|+.|-
T Consensus 115 ~~l~~------------------va~~l------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~---~~gvvlVaTSN 166 (362)
T PF03969_consen 115 DPLPQ------------------VADEL------AKESRLLCFDEFQV-TDIADAMILKRLFEALF---KRGVVLVATSN 166 (362)
T ss_pred ccHHH------------------HHHHH------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHH---HCCCEEEecCC
Confidence 1111 11111 34566799999994 34332344556666662 34566888888
Q ss_pred cCChHH
Q 013189 341 TFPKEI 346 (448)
Q Consensus 341 T~~~~v 346 (448)
+.|.++
T Consensus 167 ~~P~~L 172 (362)
T PF03969_consen 167 RPPEDL 172 (362)
T ss_pred CChHHH
Confidence 887765
No 372
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=91.99 E-value=0.86 Score=45.68 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=15.3
Q ss_pred CCeeEeccCCCCcchhhh
Q 013189 183 RDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~~ 200 (448)
.+.|+-+|.|+|||..+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 368999999999999654
No 373
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=91.98 E-value=0.3 Score=52.26 Aligned_cols=31 Identities=32% Similarity=0.392 Sum_probs=25.5
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+++-.++|||||-.-+|..-+..+.+.+..+
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l 511 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKL 511 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHH
Confidence 5666899999999999987777787777765
No 374
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=91.98 E-value=0.42 Score=48.94 Aligned_cols=152 Identities=17% Similarity=0.106 Sum_probs=82.8
Q ss_pred HHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHH
Q 013189 156 LNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTREL 235 (448)
Q Consensus 156 l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL 235 (448)
++..|.. ++-.+...|.++.-..-.|.- .|.+-.|||||...++-+- .++.. + ..-+++|.+=|+.|
T Consensus 152 ~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa--~lh~k---n------Pd~~I~~Tfftk~L 218 (660)
T COG3972 152 LLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAA--ELHSK---N------PDSRIAFTFFTKIL 218 (660)
T ss_pred HHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHH--HHhcC---C------CCceEEEEeehHHH
Confidence 4444443 455667778887766656655 7788899999996433222 22211 1 12359999999999
Q ss_pred HHHHHHHHHHhccc-----C---CcEEEEEECCCCHHHHHHHHhcCC---cEEEeChhHHHHH----HhcccccCCCeeE
Q 013189 236 SSQIHVEAKKFSYQ-----T---GVKVVVAYGGAPINQQLRELERGV---DILVATPGRLVDL----LERARVSLQMIRY 300 (448)
Q Consensus 236 a~qi~~~~~~~~~~-----~---~~~~~~~~gg~~~~~~~~~l~~~~---~Ilv~TP~~L~~~----l~~~~~~l~~v~~ 300 (448)
+.++...+.+|+.. + .+-++.-.||....-........| .+-++--|.-.+. +-+...+.+-.++
T Consensus 219 ~s~~r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ 298 (660)
T COG3972 219 ASTMRTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDY 298 (660)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccE
Confidence 99999999888621 1 123344455654332211111111 2222211111111 1111223677899
Q ss_pred EEEecCCccCcCCCHHHHHHHHHHc
Q 013189 301 LALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 301 lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+.+||+.- |-..+..++..+
T Consensus 299 ilIDE~QD-----FP~~F~~Lcf~~ 318 (660)
T COG3972 299 ILIDESQD-----FPQSFIDLCFMV 318 (660)
T ss_pred EEeccccc-----CCHHHHHHHHHH
Confidence 99999984 444444454444
No 375
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=91.96 E-value=1.1 Score=48.11 Aligned_cols=73 Identities=19% Similarity=0.355 Sum_probs=56.7
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh---c-CCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.++||.|+|++.|.++++.+.+. ++++..++++.+..+....+. + ..+||||| +.+. ..+++..|+
T Consensus 258 ~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~a-rGIDip~V~ 327 (572)
T PRK04537 258 ARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAA-RGLHIDGVK 327 (572)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhh-cCCCccCCC
Confidence 46999999999999999988774 578999999988766655443 2 47999999 3444 356899999
Q ss_pred EEEEecC
Q 013189 300 YLALDEA 306 (448)
Q Consensus 300 ~lVlDEa 306 (448)
+||.-++
T Consensus 328 ~VInyd~ 334 (572)
T PRK04537 328 YVYNYDL 334 (572)
T ss_pred EEEEcCC
Confidence 9987554
No 376
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=91.93 E-value=0.61 Score=48.03 Aligned_cols=70 Identities=24% Similarity=0.295 Sum_probs=55.2
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh---c-CCcEEEeChhHHHHHHhcccccCCCe
Q 013189 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 223 ~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~TP~~L~~~l~~~~~~l~~v 298 (448)
.|.+||.+.++.=|.-+++.+.+. +++++.++||....+....|. . ..+|+|||- +--..++..+|
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD------vAgRGIDIpnV 586 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATD------VAGRGIDIPNV 586 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec------ccccCCCCCcc
Confidence 467999999999999999999985 589999999998776655543 2 479999993 12235788999
Q ss_pred eEEE
Q 013189 299 RYLA 302 (448)
Q Consensus 299 ~~lV 302 (448)
++||
T Consensus 587 SlVi 590 (673)
T KOG0333|consen 587 SLVI 590 (673)
T ss_pred ceee
Confidence 8876
No 377
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=91.91 E-value=2.5 Score=43.91 Aligned_cols=38 Identities=13% Similarity=0.306 Sum_probs=24.4
Q ss_pred CCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEE
Q 013189 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLF 338 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~ 338 (448)
...+++||||+|.|.. .....+++.+..++ ....+|+.
T Consensus 120 ~~~kvvIIdead~lt~----~~~n~LLk~lEep~-~~~~~Il~ 157 (451)
T PRK06305 120 SRYKIYIIDEVHMLTK----EAFNSLLKTLEEPP-QHVKFFLA 157 (451)
T ss_pred CCCEEEEEecHHhhCH----HHHHHHHHHhhcCC-CCceEEEE
Confidence 5678899999998864 34455666665543 34444443
No 378
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.81 E-value=0.42 Score=47.60 Aligned_cols=69 Identities=22% Similarity=0.308 Sum_probs=38.6
Q ss_pred CeeEEEEecCCccCcC-C---CHHHH----HHHHHHcCC---CCCCCceEEEEecc-CChHHHHHHHHhhcCcEEEEecc
Q 013189 297 MIRYLALDEADRMLDM-G---FEPQI----RKIVQQMDM---PPPGMRQTMLFSAT-FPKEIQRLASDFLANYIFLAVGR 364 (448)
Q Consensus 297 ~v~~lVlDEah~ll~~-g---f~~~i----~~i~~~l~~---~~~~~~q~i~~SAT-~~~~v~~l~~~~l~~~~~i~v~~ 364 (448)
--+.+.|||+|.|... | --+.- .+++-+++- .....+.++.+-|| +|=++.+.++.-+.+.++|-...
T Consensus 304 APStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~ 383 (491)
T KOG0738|consen 304 APSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPD 383 (491)
T ss_pred CCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCC
Confidence 3467899999988642 1 00111 122333321 11223447777777 58788777776666666665544
Q ss_pred c
Q 013189 365 V 365 (448)
Q Consensus 365 ~ 365 (448)
.
T Consensus 384 ~ 384 (491)
T KOG0738|consen 384 A 384 (491)
T ss_pred H
Confidence 3
No 379
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.79 E-value=0.68 Score=45.35 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=16.0
Q ss_pred CCC-eeEeccCCCCcchhhh
Q 013189 182 GRD-LMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d-~li~a~TGsGKT~~~~ 200 (448)
..+ +++.+|.|+|||.+..
T Consensus 23 ~~halL~~Gp~G~Gktt~a~ 42 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAAL 42 (325)
T ss_pred CCceeeeeCCCCCCHHHHHH
Confidence 455 9999999999999754
No 380
>CHL00176 ftsH cell division protein; Validated
Probab=91.78 E-value=0.95 Score=48.95 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=15.4
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
-+.+++.+|+|+|||+..
T Consensus 216 p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356999999999999954
No 381
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=91.76 E-value=1.4 Score=49.51 Aligned_cols=99 Identities=12% Similarity=0.135 Sum_probs=64.2
Q ss_pred EEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCch
Q 013189 335 TMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETK 414 (448)
Q Consensus 335 ~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~ 414 (448)
+-.||.|...+-.++...|--+-+.|-..+.-...+ ....++.....|..++.+-+..... ++.|+||-|.|+
T Consensus 566 LsGMTGTA~tea~Ef~~IY~L~Vv~IPTnrP~~R~D--~~D~vy~t~~eK~~Aii~ei~~~~~-----~GrPVLVGT~SV 638 (1112)
T PRK12901 566 LAGMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKD--KEDLVYKTKREKYNAVIEEITELSE-----AGRPVLVGTTSV 638 (1112)
T ss_pred hcccCCCCHHHHHHHHHHhCCCEEECCCCCCcceec--CCCeEecCHHHHHHHHHHHHHHHHH-----CCCCEEEEeCcH
Confidence 567788876665555444433322221111111111 1123445667788888877766543 388999999999
Q ss_pred HHHHHHHHHHHHCCCCeEEecCCCCH
Q 013189 415 KGADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 415 ~~a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
+..+.|+.+|...|++...+++..-+
T Consensus 639 e~SE~lS~~L~~~gI~H~VLNAK~h~ 664 (1112)
T PRK12901 639 EISELLSRMLKMRKIPHNVLNAKLHQ 664 (1112)
T ss_pred HHHHHHHHHHHHcCCcHHHhhccchh
Confidence 99999999999999998888886443
No 382
>PRK06904 replicative DNA helicase; Validated
Probab=91.67 E-value=0.74 Score=48.03 Aligned_cols=149 Identities=14% Similarity=0.099 Sum_probs=71.1
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECC-
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGG- 260 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg- 260 (448)
|.=+++.|.+|+|||...+-.+.+.....+ -.++|++ .-.-..|+..++-... .++....+..|
T Consensus 221 G~LiiIaarPg~GKTafalnia~~~a~~~g------------~~Vl~fS-lEMs~~ql~~Rlla~~--s~v~~~~i~~g~ 285 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAAMASE------------KPVLVFS-LEMPAEQIMMRMLASL--SRVDQTKIRTGQ 285 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHhcC------------CeEEEEe-ccCCHHHHHHHHHHhh--CCCCHHHhccCC
Confidence 344778999999999954333332222211 1255554 2233444444433221 12222222222
Q ss_pred CCHHHHH-------HHHhcCCcEEEe-----ChhHHHHHHhcccccCCCeeEEEEecCCccCcCC----CHHHHHHHHHH
Q 013189 261 APINQQL-------RELERGVDILVA-----TPGRLVDLLERARVSLQMIRYLALDEADRMLDMG----FEPQIRKIVQQ 324 (448)
Q Consensus 261 ~~~~~~~-------~~l~~~~~Ilv~-----TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~g----f~~~i~~i~~~ 324 (448)
.-...++ ..+...+++.|- |+..+...+.+.......+++||||-.+.|...+ ...++..|...
T Consensus 286 ~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~ 365 (472)
T PRK06904 286 NLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRS 365 (472)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHH
Confidence 2112222 223233456552 4445544443322122358999999999875332 23456666555
Q ss_pred cCCCC-CCCceEEEEeccCChHH
Q 013189 325 MDMPP-PGMRQTMLFSATFPKEI 346 (448)
Q Consensus 325 l~~~~-~~~~q~i~~SAT~~~~v 346 (448)
|+... ..++.+|++|. ++..+
T Consensus 366 LK~lAkel~ipVi~lsQ-LnR~~ 387 (472)
T PRK06904 366 LKALAKELKVPVVALSQ-LNRTL 387 (472)
T ss_pred HHHHHHHhCCeEEEEEe-cCchh
Confidence 53221 23466777774 55444
No 383
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.56 E-value=2.2 Score=42.69 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=25.1
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEe
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~S 339 (448)
....+++||||||.|-. .....+++.+..+ +....+|++|
T Consensus 139 ~g~~rVviIDeAd~l~~----~aanaLLk~LEEp-p~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNR----NAANAILKTLEEP-PARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCH----HHHHHHHHHHhcC-CCCceEEEEE
Confidence 35678999999998855 3344455555554 3444455554
No 384
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=91.49 E-value=0.81 Score=46.16 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=23.1
Q ss_pred CCHHHHhHhhhHh---cCCCeeEeccCCCCcchh
Q 013189 168 PTPVQRHAIPISI---GGRDLMACAQTGSGKTAA 198 (448)
Q Consensus 168 pt~~Q~~~i~~i~---~g~d~li~a~TGsGKT~~ 198 (448)
+.++=..+|..+. .|+-.+|.|+.|+|||+.
T Consensus 152 ~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 152 PEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred CcccceeeeeeecccccCceEEEeCCCCCChhHH
Confidence 3455556665544 688899999999999974
No 385
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=91.38 E-value=0.44 Score=48.44 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=15.0
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
+.+++++|+|+|||+..
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 57999999999999854
No 386
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=91.37 E-value=0.79 Score=43.65 Aligned_cols=142 Identities=13% Similarity=0.094 Sum_probs=74.3
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEc---CcHHHHHHHHHHHHHhcccCCcEEEEEE
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA---PTRELSSQIHVEAKKFSYQTGVKVVVAY 258 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~---PtreLa~qi~~~~~~~~~~~~~~~~~~~ 258 (448)
|.=+++.|.||.|||+..+--+++.+...+ ..+++++ +..+++..+....... ....+.
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~------------~~vly~SlEm~~~~l~~R~la~~s~v------~~~~i~ 80 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGG------------YPVLYFSLEMSEEELAARLLARLSGV------PYNKIR 80 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTS------------SEEEEEESSS-HHHHHHHHHHHHHTS------THHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcC------------CeEEEEcCCCCHHHHHHHHHHHhhcc------hhhhhh
Confidence 445889999999999976665555544321 2377776 3445544443333222 111112
Q ss_pred CCCCHHHHHH-------HHhcCCcEEEeC----hhHHHHHHhcccccCCCeeEEEEecCCccCcC----CCHHHHHHHHH
Q 013189 259 GGAPINQQLR-------ELERGVDILVAT----PGRLVDLLERARVSLQMIRYLALDEADRMLDM----GFEPQIRKIVQ 323 (448)
Q Consensus 259 gg~~~~~~~~-------~l~~~~~Ilv~T----P~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~----gf~~~i~~i~~ 323 (448)
.+.....+.. .+.+..-++..+ +..|.+.+...+.....+++||||=+|.|-.. +....+..|..
T Consensus 81 ~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~ 160 (259)
T PF03796_consen 81 SGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISR 160 (259)
T ss_dssp CCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHH
Confidence 2222222222 233332233344 44555555544333488999999999988653 34556666655
Q ss_pred HcCCCC-CCCceEEEEecc
Q 013189 324 QMDMPP-PGMRQTMLFSAT 341 (448)
Q Consensus 324 ~l~~~~-~~~~q~i~~SAT 341 (448)
.|+... ..++.++++|..
T Consensus 161 ~Lk~lA~~~~i~vi~~sQl 179 (259)
T PF03796_consen 161 ELKALAKELNIPVIALSQL 179 (259)
T ss_dssp HHHHHHHHHTSEEEEEEEB
T ss_pred HHHHHHHHcCCeEEEcccc
Confidence 442110 124556666664
No 387
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.35 E-value=1.9 Score=44.28 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.4
Q ss_pred CeeEeccCCCCcchhhh
Q 013189 184 DLMACAQTGSGKTAAFC 200 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~ 200 (448)
-+++++++|+|||+...
T Consensus 101 vi~~vG~~GsGKTTtaa 117 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCG 117 (428)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 48899999999998643
No 388
>PRK04328 hypothetical protein; Provisional
Probab=91.28 E-value=0.95 Score=42.95 Aligned_cols=54 Identities=15% Similarity=0.216 Sum_probs=36.2
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY 248 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~ 248 (448)
.|.-+++.+++|+|||...+-.+.+.+.+. -.+++++ +.+-..++.+.++.|..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~g-------------e~~lyis-~ee~~~~i~~~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMG-------------EPGVYVA-LEEHPVQVRRNMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcC-------------CcEEEEE-eeCCHHHHHHHHHHcCC
Confidence 466799999999999986554454443221 2366665 66667777777777753
No 389
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.18 E-value=0.56 Score=47.44 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=21.7
Q ss_pred CHHHHhHhhhH---hcCCCeeEeccCCCCcchh
Q 013189 169 TPVQRHAIPIS---IGGRDLMACAQTGSGKTAA 198 (448)
Q Consensus 169 t~~Q~~~i~~i---~~g~d~li~a~TGsGKT~~ 198 (448)
..+-..+|..+ -.|+-+.+.+++|+|||..
T Consensus 152 ~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 152 EDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred cccceeeeeeEEEeCCCCEEEEECCCCCChhHH
Confidence 33344455443 3788999999999999985
No 390
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.17 E-value=0.69 Score=51.00 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=16.3
Q ss_pred CCCeeEeccCCCCcchhhh
Q 013189 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~ 200 (448)
..++++.+++|+|||....
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4689999999999999643
No 391
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=91.16 E-value=0.99 Score=44.45 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=18.4
Q ss_pred hHhcCCCeeEeccCCCCcchhh
Q 013189 178 ISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 178 ~i~~g~d~li~a~TGsGKT~~~ 199 (448)
.+..++++++.+++|+|||...
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHHH
Confidence 4456889999999999999953
No 392
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=91.11 E-value=4 Score=44.43 Aligned_cols=120 Identities=15% Similarity=0.208 Sum_probs=77.6
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHH---Hhc-CCcEEEeChhHHHHHHhcccccCCC
Q 013189 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE---LER-GVDILVATPGRLVDLLERARVSLQM 297 (448)
Q Consensus 222 ~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Ilv~TP~~L~~~l~~~~~~l~~ 297 (448)
.+.++||+++|+..+..+.+.+.+. ++++..++++....+.... +.. ..+|+||| +.+. ..+++..
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~-rGfDiP~ 510 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLPE 510 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc-CCeeeCC
Confidence 3457999999999999999988874 5788888888765444332 322 47899999 3333 4678999
Q ss_pred eeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHh
Q 013189 298 IRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF 353 (448)
Q Consensus 298 v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~ 353 (448)
++++|+=|++...-......+..++.+.... ..-.++++--..+..+...+...
T Consensus 511 v~lVvi~DadifG~p~~~~~~iqriGRagR~--~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 511 VSLVAILDADKEGFLRSERSLIQTIGRAARN--VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred CcEEEEeCcccccCCCCHHHHHHHhcCCCCC--CCCEEEEEEcCCCHHHHHHHHHH
Confidence 9999998888653322233443334333322 22346666666666665555443
No 393
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=91.11 E-value=0.45 Score=52.52 Aligned_cols=72 Identities=22% Similarity=0.241 Sum_probs=52.2
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
..++|-|+.++.. ....++|.|..|||||.+..-=+ .+++.... ...-++|+|+-|+..|..+.+.+.+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ri-a~Li~~~~--------i~P~~IL~lTFT~kAA~em~~Rl~~ 71 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRI-AHLIAEKN--------VAPWNILAITFTNKAAREMKERVEK 71 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHH-HHHHHcCC--------CCHHHeeeeeccHHHHHHHHHHHHH
Confidence 4589999999975 34679999999999999744333 33443210 0112499999999999999999987
Q ss_pred hcc
Q 013189 246 FSY 248 (448)
Q Consensus 246 ~~~ 248 (448)
+..
T Consensus 72 ~~~ 74 (726)
T TIGR01073 72 LLG 74 (726)
T ss_pred Hhc
Confidence 753
No 394
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.09 E-value=1.4 Score=46.55 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=30.1
Q ss_pred CCeeEEEEecCCccCcC----C---CHHHHHHHHHHcCCCCCCCceEEEEeccCChHHH
Q 013189 296 QMIRYLALDEADRMLDM----G---FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~----g---f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
+.-..+.|||+|.|.-. + -.-.+..++-.|+-. ...+++.++.||.-+++-
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl-~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGL-EERRGVYVIAATNRPDII 660 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccc-ccccceEEEeecCCCccc
Confidence 34556889999998531 2 112333444444332 344678899999866643
No 395
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=91.08 E-value=1.3 Score=43.75 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=24.3
Q ss_pred CHHHHhHhhhHhc--CC---CeeEeccCCCCcchhhhh
Q 013189 169 TPVQRHAIPISIG--GR---DLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 169 t~~Q~~~i~~i~~--g~---d~li~a~TGsGKT~~~~l 201 (448)
.|+|...+..+.. ++ -+++.+|.|+|||.....
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~ 40 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF 40 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH
Confidence 5777777776652 22 388999999999987554
No 396
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=91.06 E-value=0.29 Score=47.80 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=14.7
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
.++++.+|.|+|||...
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999853
No 397
>PRK10436 hypothetical protein; Provisional
Probab=90.96 E-value=0.66 Score=48.14 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=18.0
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHH
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l 207 (448)
+--+++++|||||||+.. ..+|..+
T Consensus 218 ~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 218 QGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CCeEEEECCCCCChHHHH-HHHHHhh
Confidence 345899999999999963 3345544
No 398
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=90.96 E-value=4 Score=44.71 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=55.3
Q ss_pred ceEEEEcCcHH--------HHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh---c-CCcEEEeChhHHHHHHhcc
Q 013189 224 PLALILAPTRE--------LSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERA 291 (448)
Q Consensus 224 ~~~lil~Ptre--------La~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~TP~~L~~~l~~~ 291 (448)
-+++|+||+.+ -+.++++.+.+.. .++++..++|+.+..+....+. . ..+|||||. .+ ..
T Consensus 472 ~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~--~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vi-e~ 543 (681)
T PRK10917 472 RQAYVVCPLIEESEKLDLQSAEETYEELQEAF--PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT-----VI-EV 543 (681)
T ss_pred CcEEEEEcccccccchhHHHHHHHHHHHHHHC--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----ce-ee
Confidence 46999999653 3455566665542 2478999999988766554433 2 479999994 22 24
Q ss_pred cccCCCeeEEEEecCCcc
Q 013189 292 RVSLQMIRYLALDEADRM 309 (448)
Q Consensus 292 ~~~l~~v~~lVlDEah~l 309 (448)
.+++.+++++|+..+++.
T Consensus 544 GiDip~v~~VIi~~~~r~ 561 (681)
T PRK10917 544 GVDVPNATVMVIENAERF 561 (681)
T ss_pred CcccCCCcEEEEeCCCCC
Confidence 678999999999999864
No 399
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=90.91 E-value=1 Score=50.18 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.1
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
+..+++.+|+|+|||...
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999854
No 400
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.90 E-value=0.42 Score=52.09 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=35.9
Q ss_pred CCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCC
Q 013189 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~ 343 (448)
..--|||||+.|++.+.-.-..++.++++. |.+.+.++.|=+-|
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~----P~~l~lvv~SR~rP 171 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHA----PENLTLVVTSRSRP 171 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhC----CCCeEEEEEeccCC
Confidence 344689999999999877778888899888 88888888887643
No 401
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.88 E-value=1.6 Score=42.58 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=14.3
Q ss_pred CeeEeccCCCCcchhh
Q 013189 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~li~a~TGsGKT~~~ 199 (448)
.+++.++.|+|||.+.
T Consensus 40 ~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 40 HLLFAGPPGTGKTTAA 55 (319)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999864
No 402
>PTZ00293 thymidine kinase; Provisional
Probab=90.83 E-value=1 Score=41.55 Aligned_cols=18 Identities=28% Similarity=0.220 Sum_probs=14.4
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
|+=.++.+|.+||||.-.
T Consensus 4 G~i~vi~GpMfSGKTteL 21 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTEL 21 (211)
T ss_pred eEEEEEECCCCChHHHHH
Confidence 445688999999999753
No 403
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=90.79 E-value=0.92 Score=46.61 Aligned_cols=149 Identities=13% Similarity=0.118 Sum_probs=68.5
Q ss_pred hcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEEC
Q 013189 180 IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYG 259 (448)
Q Consensus 180 ~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~g 259 (448)
..|.=+++.|++|+|||...+--+.+.....+ -.+++++ .-.-..|+...+-.. ..++....+..
T Consensus 192 ~~g~liviag~pg~GKT~~al~ia~~~a~~~g------------~~v~~fS-lEm~~~~l~~Rl~~~--~~~v~~~~~~~ 256 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLALNIAENVALREG------------KPVLFFS-LEMSAEQLGERLLAS--KSGINTGNIRT 256 (421)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCC------------CcEEEEE-CCCCHHHHHHHHHHH--HcCCCHHHHhc
Confidence 34556889999999999965544433322211 1266665 222333443333221 11222222222
Q ss_pred CCCHHHHH-------HHHhcCCcEEEe-----ChhHHHHHHhcccccCCCeeEEEEecCCccCc---CCCHHHHHHHHHH
Q 013189 260 GAPINQQL-------RELERGVDILVA-----TPGRLVDLLERARVSLQMIRYLALDEADRMLD---MGFEPQIRKIVQQ 324 (448)
Q Consensus 260 g~~~~~~~-------~~l~~~~~Ilv~-----TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~---~gf~~~i~~i~~~ 324 (448)
|.....++ ..+.+ ..+.|. |+..+...+.+.+.....+++||||=.+.|.. ......+..|...
T Consensus 257 ~~l~~~~~~~~~~~~~~l~~-~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~ 335 (421)
T TIGR03600 257 GRFNDSDFNRLLNAVDRLSE-KDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRG 335 (421)
T ss_pred CCCCHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCHHHHHHHHHHH
Confidence 22212222 22222 345553 23334443332222223689999999988753 1223345555544
Q ss_pred cCCCC-CCCceEEEEeccCChH
Q 013189 325 MDMPP-PGMRQTMLFSATFPKE 345 (448)
Q Consensus 325 l~~~~-~~~~q~i~~SAT~~~~ 345 (448)
|+... ..++.+|++|. ++..
T Consensus 336 Lk~lAke~~i~Vi~lsQ-lnr~ 356 (421)
T TIGR03600 336 LKALAKELDVPVVLLAQ-LNRG 356 (421)
T ss_pred HHHHHHHhCCcEEEecc-cCcc
Confidence 42211 22354555554 4433
No 404
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.75 E-value=2.7 Score=42.20 Aligned_cols=41 Identities=12% Similarity=0.320 Sum_probs=24.7
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEecc
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
+...++|||||+|.|.. ..+..++..+..+ +.... ++++++
T Consensus 106 ~~~~kiviIDE~~~l~~----~~~~~ll~~le~~-~~~~~-~Il~~~ 146 (367)
T PRK14970 106 TGKYKIYIIDEVHMLSS----AAFNAFLKTLEEP-PAHAI-FILATT 146 (367)
T ss_pred cCCcEEEEEeChhhcCH----HHHHHHHHHHhCC-CCceE-EEEEeC
Confidence 45678999999998754 3445555556443 33333 334444
No 405
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.71 E-value=0.29 Score=49.07 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.6
Q ss_pred cCCCeeEeccCCCCcchh
Q 013189 181 GGRDLMACAQTGSGKTAA 198 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~ 198 (448)
.+.-+++++|||||||+.
T Consensus 133 ~~glilI~GpTGSGKTTt 150 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL 150 (358)
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 456799999999999995
No 406
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.68 E-value=2.6 Score=46.06 Aligned_cols=44 Identities=11% Similarity=0.227 Sum_probs=27.2
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCCh
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~ 344 (448)
....+++||||||.|.. .....++..|..++ ....+| |.+|-+.
T Consensus 116 ~g~~KV~IIDEa~~LT~----~A~NALLKtLEEPP-~~tifI-LaTte~~ 159 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSK----SAFNALLKTLEEPP-KHVIFI-LATTEVH 159 (725)
T ss_pred cCCCEEEEEEChhhCCH----HHHHHHHHHhhcCC-CceEEE-EEcCChh
Confidence 35678999999998865 34555666666553 344344 4445443
No 407
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=90.67 E-value=5.3 Score=39.40 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=34.1
Q ss_pred CCeeEEEEecCCccC-cCCCHHHHHHHHHHcCC--CCCCCceEEEEeccCChHHHHHHHHhh
Q 013189 296 QMIRYLALDEADRML-DMGFEPQIRKIVQQMDM--PPPGMRQTMLFSATFPKEIQRLASDFL 354 (448)
Q Consensus 296 ~~v~~lVlDEah~ll-~~gf~~~i~~i~~~l~~--~~~~~~q~i~~SAT~~~~v~~l~~~~l 354 (448)
.+.++||+|=+-++- +....+++..+...++. +..+.-.++.++||...+...-+..|.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 556788888887764 22334566666554321 222334578999997655444455554
No 408
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.65 E-value=1.7 Score=43.66 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=25.8
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEecc
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
....+++||||+|.|-. .....+++.+..+ +....+|++|..
T Consensus 139 ~~~~kVviIDead~m~~----~aanaLLK~LEep-p~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNA----NAANALLKVLEEP-PARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCH----HHHHHHHHHHhcC-CCCeEEEEEECC
Confidence 35678999999998854 4444555555544 334445554443
No 409
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=90.54 E-value=0.51 Score=47.51 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=17.8
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHH
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l 207 (448)
...++++++||||||+.. -.++..+
T Consensus 149 ~GlilI~G~TGSGKTT~l-~al~~~i 173 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLA-ASIYQHC 173 (372)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 346899999999999953 3344444
No 410
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=90.50 E-value=0.94 Score=42.04 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=33.8
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~ 247 (448)
.|.-+++.+++|+|||...+-.+...+.+ +-.+++++ +.+...++.+.+..+.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~-------------g~~~~y~s-~e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN-------------GEKAMYIS-LEEREERILGYAKSKG 67 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-------------CCeEEEEE-CCCCHHHHHHHHHHcC
Confidence 35678999999999987544334333321 12355554 4556788888887764
No 411
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=90.46 E-value=3.5 Score=40.97 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=28.1
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEec
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
....+++|||+||+|-. ..-..+++-|..|+ ...-+|++|.
T Consensus 106 ~g~~kV~iI~~ae~m~~----~AaNaLLKtLEEPp-~~t~fiL~t~ 146 (334)
T PRK07993 106 LGGAKVVWLPDAALLTD----AAANALLKTLEEPP-ENTWFFLACR 146 (334)
T ss_pred cCCceEEEEcchHhhCH----HHHHHHHHHhcCCC-CCeEEEEEEC
Confidence 45678999999999976 45566777777764 3444555554
No 412
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.45 E-value=1.8 Score=41.28 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=31.8
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEc---CcHHHHHHHHHHHHHh
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA---PTRELSSQIHVEAKKF 246 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~---PtreLa~qi~~~~~~~ 246 (448)
.|.-+++.+++|+|||...+-.+.+.+.. +-++++++ |...+..++...+..+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~-------------Ge~vlyis~Ee~~~~~~~~l~~~a~~~ 90 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR-------------GNPVLFVTVESPANFVYTSLKERAKAM 90 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC-------------CCcEEEEEecCCchHHHHHHHHHHHHc
Confidence 45678999999999999655444443321 22477776 3344444554444444
No 413
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=90.42 E-value=0.41 Score=51.93 Aligned_cols=50 Identities=18% Similarity=0.136 Sum_probs=39.3
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
..+++++|+||||||..|++|-|-.+- ..+||+=|--|+........++.
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~~~---------------gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLTFK---------------GSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhcCC---------------CCEEEEeCCchHHHHHHHHHHhC
Confidence 358999999999999999999765321 13888999999988776666654
No 414
>PRK10867 signal recognition particle protein; Provisional
Probab=90.29 E-value=3.7 Score=42.25 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=14.2
Q ss_pred CeeEeccCCCCcchhhh
Q 013189 184 DLMACAQTGSGKTAAFC 200 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~ 200 (448)
-+++++++|+|||+...
T Consensus 102 vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAG 118 (433)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 47899999999998643
No 415
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.29 E-value=0.31 Score=48.52 Aligned_cols=45 Identities=31% Similarity=0.394 Sum_probs=30.2
Q ss_pred hHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHH
Q 013189 178 ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (448)
Q Consensus 178 ~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 236 (448)
++..+++++++++||||||+.. -.++..+- ...+++.+-.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll-~aLl~~i~-------------~~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMS-KTLISAIP-------------PQERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHH-HHHHcccC-------------CCCCEEEECCCcccc
Confidence 4457899999999999999942 22222221 123478888888874
No 416
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=90.11 E-value=0.6 Score=47.00 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=15.4
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
.+.+++.+|+|+|||+..
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999854
No 417
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.09 E-value=0.67 Score=46.01 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=29.8
Q ss_pred hHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHH
Q 013189 178 ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSS 237 (448)
Q Consensus 178 ~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~ 237 (448)
++..+++++|+++||||||... -.++..+-. .-+++++--+.||..
T Consensus 156 ~v~~~~nili~G~tgSGKTTll-~aL~~~ip~-------------~~ri~tiEd~~El~l 201 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTFT-NAALREIPA-------------IERLITVEDAREIVL 201 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHHH-HHHHhhCCC-------------CCeEEEecCCCcccc
Confidence 3457899999999999999942 233332211 124777767777643
No 418
>PRK07004 replicative DNA helicase; Provisional
Probab=89.99 E-value=0.9 Score=47.24 Aligned_cols=146 Identities=12% Similarity=0.100 Sum_probs=70.3
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEc---CcHHHHHHHHHHHHHhcccCCcEEEEE
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA---PTRELSSQIHVEAKKFSYQTGVKVVVA 257 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~---PtreLa~qi~~~~~~~~~~~~~~~~~~ 257 (448)
.|.=+++.|.+|+|||...+--+.+.....+ ..+++++ +..+|+..+..... ++....+
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~~~------------~~v~~fSlEM~~~ql~~R~la~~~------~v~~~~i 273 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEYG------------LPVAVFSMEMPGTQLAMRMLGSVG------RLDQHRM 273 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHcC------------CeEEEEeCCCCHHHHHHHHHHhhc------CCCHHHH
Confidence 3445788999999999965443333222211 1255553 44444444322211 1211111
Q ss_pred -ECCCCHHHH------HHHHhcCCcEEEe-----ChhHHHHHHhcccccCCCeeEEEEecCCccCcC----CCHHHHHHH
Q 013189 258 -YGGAPINQQ------LRELERGVDILVA-----TPGRLVDLLERARVSLQMIRYLALDEADRMLDM----GFEPQIRKI 321 (448)
Q Consensus 258 -~gg~~~~~~------~~~l~~~~~Ilv~-----TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~----gf~~~i~~i 321 (448)
.|..+..++ ...+.+ ..+.|. |+..+...+.+.......+++||||=.+.|... .....+..|
T Consensus 274 ~~g~l~~~e~~~~~~a~~~l~~-~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~I 352 (460)
T PRK07004 274 RTGRLTDEDWPKLTHAVQKMSE-AQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEI 352 (460)
T ss_pred hcCCCCHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHH
Confidence 222222222 123333 456553 344444433332222345889999999988532 233456666
Q ss_pred HHHcCCCC-CCCceEEEEeccCChHH
Q 013189 322 VQQMDMPP-PGMRQTMLFSATFPKEI 346 (448)
Q Consensus 322 ~~~l~~~~-~~~~q~i~~SAT~~~~v 346 (448)
...|+... ..++.++++|. ++..+
T Consensus 353 sr~LK~lAkel~ipVi~lsQ-LnR~~ 377 (460)
T PRK07004 353 SRSLKSLAKELDVPVIALSQ-LNRGL 377 (460)
T ss_pred HHHHHHHHHHhCCeEEEEec-cChhh
Confidence 65553221 13456676665 44443
No 419
>PRK09087 hypothetical protein; Validated
Probab=89.94 E-value=1.1 Score=41.98 Aligned_cols=42 Identities=10% Similarity=0.092 Sum_probs=26.0
Q ss_pred EEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHH
Q 013189 300 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEI 346 (448)
Q Consensus 300 ~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v 346 (448)
+|+||++|.+. .-...+..+++.+. ...+++|+.|.|.|.++
T Consensus 90 ~l~iDDi~~~~--~~~~~lf~l~n~~~---~~g~~ilits~~~p~~~ 131 (226)
T PRK09087 90 PVLIEDIDAGG--FDETGLFHLINSVR---QAGTSLLMTSRLWPSSW 131 (226)
T ss_pred eEEEECCCCCC--CCHHHHHHHHHHHH---hCCCeEEEECCCChHHh
Confidence 79999999763 23566777777763 22355555555555544
No 420
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=89.94 E-value=2.5 Score=37.65 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=38.7
Q ss_pred CCCeeEEEEecCCccCcCCCH--HHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHH
Q 013189 295 LQMIRYLALDEADRMLDMGFE--PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASD 352 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~--~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~ 352 (448)
-..+++|||||+=..+..++. +.+..+++.. |...-+|+..-..|+++.+++..
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r----p~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQER----PGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC----CCCCEEEEECCCCCHHHHHhCce
Confidence 467899999999988887743 3455555544 55666777777788888876653
No 421
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.88 E-value=1.1 Score=46.76 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=56.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhc----CCcEEEeChhHHHHHHhcccccCCC
Q 013189 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER----GVDILVATPGRLVDLLERARVSLQM 297 (448)
Q Consensus 222 ~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ilv~TP~~L~~~l~~~~~~l~~ 297 (448)
...++||.|-|+.-|.++...++.. ++++..++|+.+..+....|.. .+.|||||- +-...+++..
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd------VAaRGLDi~d 409 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD------VAARGLDVPD 409 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEcc------cccccCCCcc
Confidence 3467999999999999999988884 4788999999987766655543 489999992 2234578888
Q ss_pred eeEEEE
Q 013189 298 IRYLAL 303 (448)
Q Consensus 298 v~~lVl 303 (448)
|++||-
T Consensus 410 V~lVIn 415 (519)
T KOG0331|consen 410 VDLVIN 415 (519)
T ss_pred ccEEEe
Confidence 988874
No 422
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=89.87 E-value=1.6 Score=44.96 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=54.5
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh---c-CCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.++||.|++++-|..+++.+++ .++.+..++|+.+..+....+. . .++||||| +.+. ..+++..|+
T Consensus 246 ~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT-----d~~~-~GiDip~v~ 315 (434)
T PRK11192 246 TRSIVFVRTRERVHELAGWLRK----AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT-----DVAA-RGIDIDDVS 315 (434)
T ss_pred CeEEEEeCChHHHHHHHHHHHh----CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc-----cccc-cCccCCCCC
Confidence 4699999999999999999887 3678899999988766655443 2 47999999 2333 456889999
Q ss_pred EEEE
Q 013189 300 YLAL 303 (448)
Q Consensus 300 ~lVl 303 (448)
+||.
T Consensus 316 ~VI~ 319 (434)
T PRK11192 316 HVIN 319 (434)
T ss_pred EEEE
Confidence 9884
No 423
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=89.82 E-value=2.1 Score=44.49 Aligned_cols=70 Identities=17% Similarity=0.290 Sum_probs=53.7
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh---c-CCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.++||.|+++.-+..+++.+.+. ++++..++|+.+..+....+. . ..+||||| +.+. ..+++..|+
T Consensus 246 ~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT-----dv~~-rGiDip~v~ 315 (456)
T PRK10590 246 QQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT-----DIAA-RGLDIEELP 315 (456)
T ss_pred CcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc-----cHHh-cCCCcccCC
Confidence 45999999999999999888764 678889999988766554443 2 47999999 3333 357888999
Q ss_pred EEEE
Q 013189 300 YLAL 303 (448)
Q Consensus 300 ~lVl 303 (448)
+||.
T Consensus 316 ~VI~ 319 (456)
T PRK10590 316 HVVN 319 (456)
T ss_pred EEEE
Confidence 8874
No 424
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=89.76 E-value=0.57 Score=42.60 Aligned_cols=55 Identities=15% Similarity=0.304 Sum_probs=26.3
Q ss_pred CeeEEEEecCCccCcCC-CH-HHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHH
Q 013189 297 MIRYLALDEADRMLDMG-FE-PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASD 352 (448)
Q Consensus 297 ~v~~lVlDEah~ll~~g-f~-~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~ 352 (448)
.=.++||||||..+... +. .....+++.+........-++++|-. +..+...++.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~-~~~id~~ir~ 135 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQS-PSQIDKFIRD 135 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES--GGGB-HHHHC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCC-HHHHhHHHHH
Confidence 44689999999987643 31 22334444443333445556666554 4445544444
No 425
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=89.74 E-value=0.86 Score=41.73 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=18.9
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHH
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIIS 205 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~ 205 (448)
.|+-+.+.+++|+|||...+..+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~ 35 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN 35 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3556899999999999976544443
No 426
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=89.65 E-value=0.79 Score=48.08 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=30.0
Q ss_pred CCCcccCC-CCHHHHHHHHH--CCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhh
Q 013189 144 VNTFAEID-LGEALNLNIRR--CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 144 ~~~f~~~~-l~~~l~~~l~~--~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 199 (448)
-.+|++++ |++.+.+.... ..+..|.-+..+-++ ..+.+++.+|+|+|||+..
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~---~p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLK---PPKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCC---CCcceEEECCCCCcHHHHH
Confidence 34677875 55444332221 123333333333332 2467999999999999853
No 427
>PRK05748 replicative DNA helicase; Provisional
Probab=89.57 E-value=1.5 Score=45.46 Aligned_cols=147 Identities=10% Similarity=0.051 Sum_probs=69.3
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH-HhcccCCcEEEEEEC
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK-KFSYQTGVKVVVAYG 259 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~-~~~~~~~~~~~~~~g 259 (448)
.|.=+++.|.+|+|||+..+--+.+...+.+ -.+++++ .-.-..|+...+- .++ ++....+..
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~~g------------~~v~~fS-lEms~~~l~~R~l~~~~---~v~~~~i~~ 265 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATKTD------------KNVAIFS-LEMGAESLVMRMLCAEG---NIDAQRLRT 265 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHhCC------------CeEEEEe-CCCCHHHHHHHHHHHhc---CCCHHHhhc
Confidence 3455889999999999965543333222211 1255543 3334445555543 222 222111112
Q ss_pred CCCHHHHHH-------HHhcCCcEEEe-----ChhHHHHHHhcccccCCCeeEEEEecCCccCcCC-----CHHHHHHHH
Q 013189 260 GAPINQQLR-------ELERGVDILVA-----TPGRLVDLLERARVSLQMIRYLALDEADRMLDMG-----FEPQIRKIV 322 (448)
Q Consensus 260 g~~~~~~~~-------~l~~~~~Ilv~-----TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~g-----f~~~i~~i~ 322 (448)
|.-...++. .+.+ ..+.|. |+..+...+.+.......+++||||=.+.|-..+ ....+..|.
T Consensus 266 ~~l~~~e~~~~~~a~~~l~~-~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~ 344 (448)
T PRK05748 266 GQLTDDDWPKLTIAMGSLSD-APIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEIS 344 (448)
T ss_pred CCCCHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHH
Confidence 222222222 2222 345443 3444444443322111368999999999874221 223455555
Q ss_pred HHcCCCC-CCCceEEEEeccCChH
Q 013189 323 QQMDMPP-PGMRQTMLFSATFPKE 345 (448)
Q Consensus 323 ~~l~~~~-~~~~q~i~~SAT~~~~ 345 (448)
..|+... ..++.+|++|. ++..
T Consensus 345 ~~LK~lAke~~i~vi~lsQ-lnr~ 367 (448)
T PRK05748 345 RSLKALAKELKVPVIALSQ-LSRG 367 (448)
T ss_pred HHHHHHHHHhCCeEEEecc-cChh
Confidence 5552211 22455666666 4443
No 428
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=89.53 E-value=0.9 Score=46.80 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=16.1
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
..+.+++++|+|+|||+..
T Consensus 216 ~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3467999999999999964
No 429
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.50 E-value=1.4 Score=46.44 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=34.5
Q ss_pred CCCCcCCCCcccCC-CCHHHHHHHHHC-CCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhh
Q 013189 138 ENVPPAVNTFAEID-LGEALNLNIRRC-KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 138 ~~~~~~~~~f~~~~-l~~~l~~~l~~~-~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 199 (448)
...+++..+|.+++ ++..+.+-.... -+..|-.++.--+ .--+-+++.+|.|||||..+
T Consensus 180 ~~~~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv---~PprGvLlHGPPGCGKT~lA 240 (802)
T KOG0733|consen 180 LEFPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGV---RPPRGVLLHGPPGCGKTSLA 240 (802)
T ss_pred cCCCCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCC---CCCCceeeeCCCCccHHHHH
Confidence 33444455788885 555444332211 1445555544332 12367999999999999843
No 430
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.37 E-value=0.11 Score=54.42 Aligned_cols=8 Identities=50% Similarity=0.916 Sum_probs=0.0
Q ss_pred CCccCCCC
Q 013189 31 STYVPPHL 38 (448)
Q Consensus 31 ~~~~~~~~ 38 (448)
.-|+||..
T Consensus 513 ~~y~~p~~ 520 (556)
T PF05918_consen 513 QQYVPPSG 520 (556)
T ss_dssp --------
T ss_pred cccCCCCC
Confidence 34555544
No 431
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=89.23 E-value=2.2 Score=45.14 Aligned_cols=69 Identities=22% Similarity=0.330 Sum_probs=54.5
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhc----CCcEEEeChhHHHHHHhcccccCCCeeE
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER----GVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ilv~TP~~L~~~l~~~~~~l~~v~~ 300 (448)
++||.|.|+..|..++..+.+. ++++..++|+.+.....+.+.. ..+|||||- .. ...+++.+|.+
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTD-----va-aRGiDi~~v~~ 344 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKR----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATD-----VA-ARGLDIPDVSH 344 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHC----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEec-----hh-hccCCccccce
Confidence 5999999999999988888874 5899999999987776655543 489999993 33 33567888888
Q ss_pred EEE
Q 013189 301 LAL 303 (448)
Q Consensus 301 lVl 303 (448)
||=
T Consensus 345 Vin 347 (513)
T COG0513 345 VIN 347 (513)
T ss_pred eEE
Confidence 853
No 432
>PTZ00110 helicase; Provisional
Probab=89.14 E-value=7.4 Score=41.46 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=55.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHH---hc-CCcEEEeChhHHHHHHhcccccCCC
Q 013189 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQM 297 (448)
Q Consensus 222 ~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~TP~~L~~~l~~~~~~l~~ 297 (448)
...++||.|+|+.-|..+...++. .++.+..++|+....+....+ .. ...|||||- .+. ..+++.+
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~----~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~~-rGIDi~~ 445 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRL----DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VAS-RGLDVKD 445 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHH----cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hhh-cCCCccc
Confidence 356899999999999999888875 357788899998876654433 33 478999993 333 4568899
Q ss_pred eeEEEEec
Q 013189 298 IRYLALDE 305 (448)
Q Consensus 298 v~~lVlDE 305 (448)
|++||.=+
T Consensus 446 v~~VI~~d 453 (545)
T PTZ00110 446 VKYVINFD 453 (545)
T ss_pred CCEEEEeC
Confidence 99988643
No 433
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=89.11 E-value=0.26 Score=43.92 Aligned_cols=46 Identities=26% Similarity=0.259 Sum_probs=31.1
Q ss_pred HHHHHhcCCcEEEeChhHHHHHHhccccc--CCCeeEEEEecCCccCc
Q 013189 266 QLRELERGVDILVATPGRLVDLLERARVS--LQMIRYLALDEADRMLD 311 (448)
Q Consensus 266 ~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~--l~~v~~lVlDEah~ll~ 311 (448)
..+.....+||||++...|++-.....+. ...-.+|||||||.|.+
T Consensus 112 ~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 112 LARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 34555566899999999988765433322 23446899999998865
No 434
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.08 E-value=2.2 Score=46.09 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=28.0
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhH---hcCCCeeEeccCCCCcchhhh
Q 013189 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPIS---IGGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i---~~g~d~li~a~TGsGKT~~~~ 200 (448)
.+++++-.++..++.+... .-+.. ..++-+++.+|+|+|||+.+.
T Consensus 81 ~~ldel~~~~~ki~~l~~~-----------l~~~~~~~~~~~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETW-----------LKAQVLENAPKRILLITGPSGCGKSTTIK 128 (637)
T ss_pred CCHHHhcCcHHHHHHHHHH-----------HHhcccccCCCcEEEEECCCCCCHHHHHH
Confidence 3577777777666654432 11111 123448999999999999643
No 435
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=88.99 E-value=1.7 Score=44.55 Aligned_cols=72 Identities=26% Similarity=0.299 Sum_probs=54.7
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh---c-CCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.++||.|+++..|..+++.+... ++++..++|+....+....+. . .++|||||- .+. ..+++..|+
T Consensus 256 ~~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~~-rGiDip~v~ 325 (423)
T PRK04837 256 DRAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VAA-RGLHIPAVT 325 (423)
T ss_pred CeEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hhh-cCCCccccC
Confidence 45999999999999998888763 678999999988766554443 2 489999993 333 456889999
Q ss_pred EEEEec
Q 013189 300 YLALDE 305 (448)
Q Consensus 300 ~lVlDE 305 (448)
+||.-+
T Consensus 326 ~VI~~d 331 (423)
T PRK04837 326 HVFNYD 331 (423)
T ss_pred EEEEeC
Confidence 887544
No 436
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=88.91 E-value=1.2 Score=42.35 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=17.1
Q ss_pred HhcCCCeeEeccCCCCcchh
Q 013189 179 SIGGRDLMACAQTGSGKTAA 198 (448)
Q Consensus 179 i~~g~d~li~a~TGsGKT~~ 198 (448)
+-.|+-+++.++.|+|||+.
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34788999999999999973
No 437
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.88 E-value=11 Score=34.82 Aligned_cols=154 Identities=10% Similarity=0.074 Sum_probs=80.5
Q ss_pred CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEc---CcHHHHHHHHHH----HHHhcccCCcEEE
Q 013189 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA---PTRELSSQIHVE----AKKFSYQTGVKVV 255 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~---PtreLa~qi~~~----~~~~~~~~~~~~~ 255 (448)
.=+++-++.|+|||+.-+..++=.+.. +-++.+++ ++|+...|+... ...|... .+.+.
T Consensus 29 sL~lIEGd~~tGKSvLsqr~~YG~L~~-------------g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G-~l~~~ 94 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQRFAYGFLMN-------------GYRVTYVSTELTVREFIKQMESLSYDVSDFLLSG-RLLFF 94 (235)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHhC-------------CceEEEEEechhHHHHHHHHHhcCCCchHHHhcc-eeEEE
Confidence 447899999999998655544433322 12355554 778888776442 2222111 11222
Q ss_pred EE-ECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCce
Q 013189 256 VA-YGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQ 334 (448)
Q Consensus 256 ~~-~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q 334 (448)
.+ ..+.....+. -..+++.+.+.. ...+-+++|+|=...+....-...+..++..++.... .-.
T Consensus 95 ~~~~~~~~~~~~~-------------~~~~L~~l~~~~-k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d-~gK 159 (235)
T COG2874 95 PVNLEPVNWGRRS-------------ARKLLDLLLEFI-KRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSD-LGK 159 (235)
T ss_pred EecccccccChHH-------------HHHHHHHHHhhH-HhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHh-CCC
Confidence 21 1111111111 112333332211 1455677999998877655434566666666543322 234
Q ss_pred EEEEecc---CChHHHHHHHHhhcCcEEEEeccc
Q 013189 335 TMLFSAT---FPKEIQRLASDFLANYIFLAVGRV 365 (448)
Q Consensus 335 ~i~~SAT---~~~~v~~l~~~~l~~~~~i~v~~~ 365 (448)
+|++|+- +++++.-.++....-++.+.....
T Consensus 160 vIilTvhp~~l~e~~~~rirs~~d~~l~L~~~~~ 193 (235)
T COG2874 160 VIILTVHPSALDEDVLTRIRSACDVYLRLRLEEL 193 (235)
T ss_pred EEEEEeChhhcCHHHHHHHHHhhheeEEEEhhhh
Confidence 8888885 566666666665555555554433
No 438
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=88.78 E-value=0.66 Score=50.13 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=38.8
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
..++++.|+||+|||..+.+|-+-.+ ..-+||+=|--|+...+....+++
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~~---------------~gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALKW---------------GGPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhcC---------------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 46899999999999999999976322 123788889999987777766554
No 439
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=88.77 E-value=0.62 Score=50.43 Aligned_cols=49 Identities=20% Similarity=0.147 Sum_probs=37.9
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
..+++++|+||||||..+++|.|-.. ...+||+=|--|+........++
T Consensus 175 ~~HvlviapTgSGKgvg~ViPnLL~~---------------~~S~VV~D~KGE~~~~Tag~R~~ 223 (636)
T PRK13880 175 PEHVLTYAPTRSGKGVGLVVPTLLSW---------------GHSSVITDLKGELWALTAGWRQK 223 (636)
T ss_pred CceEEEEecCCCCCceEEEccchhhC---------------CCCEEEEeCcHHHHHHHHHHHHH
Confidence 36899999999999999999987432 12389999999997666555433
No 440
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=88.73 E-value=1.1 Score=41.24 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=17.8
Q ss_pred CCCeeEeccCCCCcchhhhhhHH
Q 013189 182 GRDLMACAQTGSGKTAAFCFPII 204 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil 204 (448)
|.-+++.+++|+|||...+..+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~ 41 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAV 41 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999997554443
No 441
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.72 E-value=0.44 Score=49.14 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=29.8
Q ss_pred CCHHHHhHhhhHhcCCC--eeEeccCCCCcchhhhhhHHHHHhh
Q 013189 168 PTPVQRHAIPISIGGRD--LMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 168 pt~~Q~~~i~~i~~g~d--~li~a~TGsGKT~~~~lpil~~l~~ 209 (448)
+++.|...+..+++... +++.+|||||||+. +..+|+.+..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 36777777777766544 88999999999996 4455655543
No 442
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=88.65 E-value=2.6 Score=38.49 Aligned_cols=55 Identities=20% Similarity=0.351 Sum_probs=44.9
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHh
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF 353 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~ 353 (448)
+.+-+.+||||.-.=+|.-....+..++.++ +..-..++||.-.-.+++.+|..+
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~----k~egr~viFSSH~m~EvealCDrv 203 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQL----KNEGRAVIFSSHIMQEVEALCDRV 203 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHh----hcCCcEEEEecccHHHHHHhhheE
Confidence 5677899999998888877778888889888 444458999999989999888753
No 443
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=88.55 E-value=1.2 Score=46.00 Aligned_cols=143 Identities=13% Similarity=0.096 Sum_probs=66.9
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECC
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGG 260 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg 260 (448)
.|.=+++.|++|+|||...+--+.+.....+ -.+++++ .-.-..|+...+.... .++....+..|
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g------------~~vl~~S-lEm~~~~i~~R~~~~~--~~v~~~~~~~g 258 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEG------------KPVAFFS-LEMSAEQLAMRMLSSE--SRVDSQKLRTG 258 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCC------------CeEEEEe-CcCCHHHHHHHHHHHh--cCCCHHHhccC
Confidence 3455889999999999865443333232211 1255554 2233344444443322 12221111222
Q ss_pred CCHHHHH-------HHHhcCCcEEE-e----ChhHHHHHHhcccccCCCeeEEEEecCCccCcCC----CHHHHHHHHHH
Q 013189 261 APINQQL-------RELERGVDILV-A----TPGRLVDLLERARVSLQMIRYLALDEADRMLDMG----FEPQIRKIVQQ 324 (448)
Q Consensus 261 ~~~~~~~-------~~l~~~~~Ilv-~----TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~g----f~~~i~~i~~~ 324 (448)
.-...++ ..+.+. .+.| . |+..+...+...... ..+++||||=.+.|...+ ...++..|...
T Consensus 259 ~l~~~~~~~~~~a~~~l~~~-~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~ 336 (434)
T TIGR00665 259 KLSDEDWEKLTSAAGKLSEA-PLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSGSGRSENRQQEVSEISRS 336 (434)
T ss_pred CCCHHHHHHHHHHHHHHhcC-CEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHH
Confidence 2112222 233332 3444 3 344454444332211 348999999998774322 22445555555
Q ss_pred cCCCC-CCCceEEEEec
Q 013189 325 MDMPP-PGMRQTMLFSA 340 (448)
Q Consensus 325 l~~~~-~~~~q~i~~SA 340 (448)
|+... ..++.++++|-
T Consensus 337 Lk~lA~e~~i~vi~lsq 353 (434)
T TIGR00665 337 LKALAKELNVPVIALSQ 353 (434)
T ss_pred HHHHHHHhCCeEEEEec
Confidence 52111 23455666664
No 444
>PRK10865 protein disaggregation chaperone; Provisional
Probab=88.52 E-value=1.4 Score=49.52 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.2
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
.++++.+++|+|||...
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 47999999999999964
No 445
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=88.51 E-value=3.3 Score=40.75 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=30.1
Q ss_pred HHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccC
Q 013189 284 LVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 284 L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
|+..+..+...-+.--++|+||+|..........+..++..-... ...+-++++|.-+
T Consensus 124 lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~-r~Piciig~Ttrl 181 (408)
T KOG2228|consen 124 LLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSA-RAPICIIGVTTRL 181 (408)
T ss_pred HHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhc-CCCeEEEEeeccc
Confidence 445555443333444678999999776654433444444333221 2234455555543
No 446
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=88.47 E-value=2 Score=47.54 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=29.5
Q ss_pred CCCcccCCCCHHHHHHHHHC---CCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhh
Q 013189 144 VNTFAEIDLGEALNLNIRRC---KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 144 ~~~f~~~~l~~~l~~~l~~~---~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 199 (448)
..+|++++-....++.+.++ .+..|.-++... +..++.+++.+|+|+|||+..
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHHH
Confidence 34677775444444444432 122222222221 234578999999999999853
No 447
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=88.36 E-value=1.3 Score=49.06 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=14.7
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
+.+++.+|+|||||+..
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56899999999999854
No 448
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.35 E-value=0.52 Score=41.11 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=32.7
Q ss_pred CCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHH
Q 013189 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
...+++++||...-+|......+..++..+. ...++++++.--...+..
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~----~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELA----EEGRTVIIVTHDPELAEL 145 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHHH
Confidence 4578899999999888776777777777662 212355666554444443
No 449
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.27 E-value=0.96 Score=48.56 Aligned_cols=41 Identities=32% Similarity=0.327 Sum_probs=31.5
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEec
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
+++-..||||||---||..-+..+++.+..+ ..+ +++++=|
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~----~~~-rTVlvIA 660 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRL----MQG-RTVLVIA 660 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHh----hcC-CeEEEEe
Confidence 6777899999999999988778888888776 344 4565555
No 450
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=88.23 E-value=2.4 Score=41.80 Aligned_cols=50 Identities=12% Similarity=0.301 Sum_probs=31.0
Q ss_pred HHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEec
Q 013189 284 LVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 284 L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
+.+.+....+ ....+++|||+||.|-. ..-..+++.+..|+ ...+|+++.
T Consensus 112 i~~~l~~~p~-~~~~kVvII~~ae~m~~----~aaNaLLK~LEEPp--~~~fILi~~ 161 (314)
T PRK07399 112 IKRFLSRPPL-EAPRKVVVIEDAETMNE----AAANALLKTLEEPG--NGTLILIAP 161 (314)
T ss_pred HHHHHccCcc-cCCceEEEEEchhhcCH----HHHHHHHHHHhCCC--CCeEEEEEC
Confidence 4444443332 35789999999999865 44556666666654 444555554
No 451
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=88.07 E-value=2.5 Score=38.56 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=33.6
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHH
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEI 346 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v 346 (448)
+.+-+++++||...-++......+..++..+... ....+++++|.--...+
T Consensus 129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~-~~~~~~iii~th~~~~i 179 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKK-QPGRQFIFITPQDISGL 179 (198)
T ss_pred ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhc-CCCcEEEEEECCccccc
Confidence 4678899999999999876666666666554110 12356788876544443
No 452
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=88.05 E-value=3.7 Score=40.84 Aligned_cols=30 Identities=10% Similarity=0.279 Sum_probs=20.5
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCC
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMP 328 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~ 328 (448)
+..-++|||||||.|.. .....++..+..+
T Consensus 115 ~~~~~vviidea~~l~~----~~~~~Ll~~le~~ 144 (355)
T TIGR02397 115 SGKYKVYIIDEVHMLSK----SAFNALLKTLEEP 144 (355)
T ss_pred cCCceEEEEeChhhcCH----HHHHHHHHHHhCC
Confidence 45567999999998854 3455566666544
No 453
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=88.03 E-value=1.4 Score=44.79 Aligned_cols=47 Identities=21% Similarity=0.345 Sum_probs=30.0
Q ss_pred HHHHHHHHHCCCCC--CCHHHH-----hHhhhHhcCCCeeEeccCCCCcchhhh
Q 013189 154 EALNLNIRRCKYVK--PTPVQR-----HAIPISIGGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 154 ~~l~~~l~~~~~~~--pt~~Q~-----~~i~~i~~g~d~li~a~TGsGKT~~~~ 200 (448)
+.+---|+..||.- ++.-|+ ..++.+..+.|++..+|+|+|||-.|.
T Consensus 174 EWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 174 EWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 34433455566642 333222 123666788999999999999997654
No 454
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.02 E-value=2.7 Score=43.00 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=15.3
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
+..+-|++++|+|||++.
T Consensus 175 ~gSlYVsG~PGtgkt~~l 192 (529)
T KOG2227|consen 175 SGSLYVSGQPGTGKTALL 192 (529)
T ss_pred CcceEeeCCCCcchHHHH
Confidence 357999999999999963
No 455
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.96 E-value=2.4 Score=44.25 Aligned_cols=74 Identities=16% Similarity=0.251 Sum_probs=56.4
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
..+||.|+|+..+.++++.+++. ++.+..++++.+..+....+. ..++|||||-- + ...+++.+|+
T Consensus 227 ~~~IIF~~s~~~~e~la~~L~~~----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~-----~-~~GID~p~V~ 296 (470)
T TIGR00614 227 KSGIIYCPSRKKSEQVTASLQNL----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVA-----F-GMGINKPDVR 296 (470)
T ss_pred CceEEEECcHHHHHHHHHHHHhc----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEech-----h-hccCCcccce
Confidence 34799999999999999998874 678889999988766544332 35899999941 2 2467889999
Q ss_pred EEEEecCC
Q 013189 300 YLALDEAD 307 (448)
Q Consensus 300 ~lVlDEah 307 (448)
+||.-..-
T Consensus 297 ~VI~~~~P 304 (470)
T TIGR00614 297 FVIHYSLP 304 (470)
T ss_pred EEEEeCCC
Confidence 99976554
No 456
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=87.95 E-value=0.54 Score=50.93 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=39.1
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
..++++.||||||||..+.+|-|-.+- ..+||+=|--|+........+++
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~~---------------~S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTWP---------------GSAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhCC---------------CCEEEEeCcchHHHHHHHHHHhC
Confidence 468999999999999999999775431 13888888888887776665554
No 457
>PF05729 NACHT: NACHT domain
Probab=87.92 E-value=6.3 Score=33.87 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=13.8
Q ss_pred CeeEeccCCCCcchhh
Q 013189 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~li~a~TGsGKT~~~ 199 (448)
-+++.++.|+|||+..
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 3789999999999954
No 458
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=87.90 E-value=3.2 Score=43.13 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=55.7
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhc----CCcEEEeChhHHHHHHhcccccCCCeeE
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER----GVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ilv~TP~~L~~~l~~~~~~l~~v~~ 300 (448)
.+||.|+|+.-+..+++.+.+. ++.+..++|+.+..++...+.. ..+||||| +.+. ..+++..+++
T Consensus 244 ~~lVF~~t~~~~~~l~~~L~~~----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaT-----dv~~-rGiDi~~v~~ 313 (460)
T PRK11776 244 SCVVFCNTKKECQEVADALNAQ----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVAT-----DVAA-RGLDIKALEA 313 (460)
T ss_pred ceEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEe-----cccc-cccchhcCCe
Confidence 4899999999999999998874 5788999999887665544432 47899999 2333 3567899998
Q ss_pred EEEecCC
Q 013189 301 LALDEAD 307 (448)
Q Consensus 301 lVlDEah 307 (448)
||.-+.-
T Consensus 314 VI~~d~p 320 (460)
T PRK11776 314 VINYELA 320 (460)
T ss_pred EEEecCC
Confidence 8865543
No 459
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.90 E-value=0.63 Score=45.79 Aligned_cols=58 Identities=24% Similarity=0.265 Sum_probs=38.9
Q ss_pred CCCCCHHHHhHhh-hHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHH
Q 013189 165 YVKPTPVQRHAIP-ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (448)
Q Consensus 165 ~~~pt~~Q~~~i~-~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 236 (448)
+..+++.|..-+. ++..++++++|++||||||.. +.+++..+-.. -+.+.+--|.|+.
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~~-------------~rivtIEdt~E~~ 183 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPPE-------------ERIVTIEDTPELK 183 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCch-------------hcEEEEecccccc
Confidence 4456777665554 555889999999999999995 44555444221 2477777777753
No 460
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=87.88 E-value=0.54 Score=49.92 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=35.1
Q ss_pred CCCHHHHhHhhhH----hcCCCeeEeccCCCCcchhhhhhHHHHHhh
Q 013189 167 KPTPVQRHAIPIS----IGGRDLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 167 ~pt~~Q~~~i~~i----~~g~d~li~a~TGsGKT~~~~lpil~~l~~ 209 (448)
+|+.||...+..+ ..|+--|+.+|||+|||+..+-..|.+|-.
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 6888998887643 478989999999999999987777777654
No 461
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=87.87 E-value=2.8 Score=41.48 Aligned_cols=105 Identities=16% Similarity=0.098 Sum_probs=47.5
Q ss_pred eEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHH----HHHHHHhcccCCcEEEEE-ECC
Q 013189 186 MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI----HVEAKKFSYQTGVKVVVA-YGG 260 (448)
Q Consensus 186 li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi----~~~~~~~~~~~~~~~~~~-~gg 260 (448)
++.++-|+|||.+..+.++..++..+. ...++++ ||..-+..+ ...+..+... .+.+..- ...
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~----------~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 68 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP----------GRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWND 68 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS------------EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-S
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC----------CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCC
Confidence 467889999999988877776654321 1235555 665554442 2333343333 1221111 000
Q ss_pred CCHHHHHHHHhcCCcEEEeChhH--HHHHHhcccccCCCeeEEEEecCCccCcC
Q 013189 261 APINQQLRELERGVDILVATPGR--LVDLLERARVSLQMIRYLALDEADRMLDM 312 (448)
Q Consensus 261 ~~~~~~~~~l~~~~~Ilv~TP~~--L~~~l~~~~~~l~~v~~lVlDEah~ll~~ 312 (448)
..+. +.++..|.+.+-.. -.+-+ .-..+.++++||+-.+.+.
T Consensus 69 ~~~~-----~~nG~~i~~~~~~~~~~~~~~-----~G~~~~~i~iDE~~~~~~~ 112 (384)
T PF03237_consen 69 RKII-----LPNGSRIQFRGADSPDSGDNI-----RGFEYDLIIIDEAAKVPDD 112 (384)
T ss_dssp SEEE-----ETTS-EEEEES-----SHHHH-----HTS--SEEEEESGGGSTTH
T ss_pred CcEE-----ecCceEEEEeccccccccccc-----cccccceeeeeecccCchH
Confidence 0000 03345555555321 11111 1256789999999877653
No 462
>PRK10263 DNA translocase FtsK; Provisional
Probab=87.86 E-value=2.5 Score=48.60 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=20.9
Q ss_pred CCeeEeccCCCCcchhhhhhHHHHHhh
Q 013189 183 RDLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~~lpil~~l~~ 209 (448)
-+++|.+.||||||.+...-|+..++.
T Consensus 1011 PHLLIAGaTGSGKSv~LntLIlSLl~~ 1037 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMILSMLYK 1037 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 589999999999999866555554443
No 463
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=87.83 E-value=1.4 Score=43.65 Aligned_cols=40 Identities=15% Similarity=0.340 Sum_probs=26.6
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEe
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~S 339 (448)
....+++||||||.|.. .....+++.+..| |....+|+.+
T Consensus 108 ~~~~kvviI~~a~~~~~----~a~NaLLK~LEEP-p~~~~~Il~t 147 (329)
T PRK08058 108 ESNKKVYIIEHADKMTA----SAANSLLKFLEEP-SGGTTAILLT 147 (329)
T ss_pred ccCceEEEeehHhhhCH----HHHHHHHHHhcCC-CCCceEEEEe
Confidence 45678999999998865 3455666667665 3445455544
No 464
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=87.80 E-value=4.2 Score=36.24 Aligned_cols=54 Identities=22% Similarity=0.349 Sum_probs=32.6
Q ss_pred cCCCeeEEEEecCCccCcCCC--HHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHH
Q 013189 294 SLQMIRYLALDEADRMLDMGF--EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS 351 (448)
Q Consensus 294 ~l~~v~~lVlDEah~ll~~gf--~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~ 351 (448)
.-..+++|||||+=..++.++ .+++..+++.. |...-+|+.--..|+++.+.+.
T Consensus 93 ~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~r----p~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 93 SSGEYDLVILDEINYAVDYGLLSEEEVLDLLENR----PESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp T-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-----TT-EEEEE-SS--HHHHHH-S
T ss_pred hCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcC----CCCeEEEEECCCCCHHHHHhCC
Confidence 346789999999988888775 34455555543 5566677777778888877664
No 465
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=87.72 E-value=2.4 Score=38.15 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=37.7
Q ss_pred CCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHh
Q 013189 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF 353 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~ 353 (448)
..+++|||||+-..+..++. .+..++..|+.. |...-+|+..-.+|+++.+++...
T Consensus 121 ~~ydlviLDEl~~al~~g~l-~~eeV~~~l~~k-P~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 121 GKYDLVILDELNYALRYGLL-PLEEVVALLKAR-PEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCCEEEEehhhHHHHcCCC-CHHHHHHHHhcC-CCCcEEEEECCCCCHHHHHHHHHH
Confidence 46899999999998888753 344555555432 444546666656788888877643
No 466
>PRK04841 transcriptional regulator MalT; Provisional
Probab=87.65 E-value=6.3 Score=44.52 Aligned_cols=45 Identities=16% Similarity=0.301 Sum_probs=32.2
Q ss_pred CCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCCh
Q 013189 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~ 344 (448)
..--+||||++|.+-+....+.+..++..+ +....+|+.|-+.|+
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~----~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQ----PENLTLVVLSRNLPP 164 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhC----CCCeEEEEEeCCCCC
Confidence 344679999999886554556777777776 667778888877543
No 467
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.61 E-value=1.8 Score=48.74 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.7
Q ss_pred CCeeEeccCCCCcchhhh
Q 013189 183 RDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~~ 200 (448)
.+.++.+++|+|||....
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 579999999999999653
No 468
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=87.53 E-value=2.9 Score=38.15 Aligned_cols=50 Identities=28% Similarity=0.277 Sum_probs=33.2
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHH
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
+.+-+++++||--.-+|......+..++..+.. .. .+++++.--...+..
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~-~tii~~tH~~~~~~~ 191 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRD---QG-ITVLISSHLLSEIQK 191 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH---CC-CEEEEEcCCHHHHHH
Confidence 466789999999999998777777777776621 12 355555444444433
No 469
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=87.41 E-value=4.8 Score=39.72 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=26.8
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEec
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
....+++|||+||+|.. ..-..+++-+..|+ .+.-+|+.|.
T Consensus 106 ~~~~kV~iI~~ae~m~~----~AaNaLLKtLEEPp-~~t~fiL~t~ 146 (319)
T PRK06090 106 LNGYRLFVIEPADAMNE----SASNALLKTLEEPA-PNCLFLLVTH 146 (319)
T ss_pred cCCceEEEecchhhhCH----HHHHHHHHHhcCCC-CCeEEEEEEC
Confidence 45678999999999865 44455666666654 3443444444
No 470
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=87.37 E-value=4.3 Score=44.93 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=16.1
Q ss_pred CCCeeEeccCCCCcchhhh
Q 013189 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~ 200 (448)
..++++.+++|+|||....
T Consensus 203 ~~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3589999999999999643
No 471
>COG4907 Predicted membrane protein [Function unknown]
Probab=87.37 E-value=0.46 Score=47.81 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013189 60 SGPRWGSGSRPDFGRGQGYGSGGRSG 85 (448)
Q Consensus 60 ~~~~~~~~~~~~~~~g~g~g~~~~~~ 85 (448)
+..|++.++||+++.|||.||||||.
T Consensus 569 ~S~~~~~~GGG~G~~gGg~GGGGGGa 594 (595)
T COG4907 569 SSRRSSSSGGGGGFSGGGSGGGGGGA 594 (595)
T ss_pred ccccCCCCCCCCCcCCCCCCCCCCCC
No 472
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=87.35 E-value=0.91 Score=48.53 Aligned_cols=41 Identities=27% Similarity=0.321 Sum_probs=28.3
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEe
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~S 339 (448)
+.+-+++++||+--=+|...+..+.+.+..+ .+++-+|+.|
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~----~~~~tiIiit 525 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALERL----MQGRTTLVIA 525 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHH----hCCCEEEEEe
Confidence 5666889999999888877777776666665 3344444443
No 473
>PRK05636 replicative DNA helicase; Provisional
Probab=87.34 E-value=1.4 Score=46.40 Aligned_cols=50 Identities=8% Similarity=0.080 Sum_probs=28.4
Q ss_pred CCeeEEEEecCCccCcCC----CHHHHHHHHHHcCCCC-CCCceEEEEeccCChHH
Q 013189 296 QMIRYLALDEADRMLDMG----FEPQIRKIVQQMDMPP-PGMRQTMLFSATFPKEI 346 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~g----f~~~i~~i~~~l~~~~-~~~~q~i~~SAT~~~~v 346 (448)
..+++||||=.+.|-... ....+..|...|+... ..++.+|++|. ++..+
T Consensus 374 ~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~lsQ-LnR~~ 428 (505)
T PRK05636 374 HDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPLIAISQ-LNRGP 428 (505)
T ss_pred cCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEEee-cCccc
Confidence 458999999999885321 2234555555543211 23466777764 44443
No 474
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=87.29 E-value=5 Score=38.57 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=17.9
Q ss_pred CCeeEeccCCCCcchhhhhhHHHHHh
Q 013189 183 RDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~~lpil~~l~ 208 (448)
+++++.+++|+|||+. +-++..++
T Consensus 112 ~~~~i~g~~g~GKttl--~~~l~~~~ 135 (270)
T TIGR02858 112 LNTLIISPPQCGKTTL--LRDLARIL 135 (270)
T ss_pred eEEEEEcCCCCCHHHH--HHHHhCcc
Confidence 6889999999999994 34444443
No 475
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=87.22 E-value=3 Score=39.43 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=20.3
Q ss_pred hHhcCC-CeeEeccCCCCcchhhhhhHHHH
Q 013189 178 ISIGGR-DLMACAQTGSGKTAAFCFPIISG 206 (448)
Q Consensus 178 ~i~~g~-d~li~a~TGsGKT~~~~lpil~~ 206 (448)
.+..++ -+.++++-|||||...- .++..
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~~R-al~~s 74 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVLRR-ALLAS 74 (269)
T ss_pred HHhcCCceEEEEecCCCchhHHHH-HHHHh
Confidence 344555 58899999999999866 44433
No 476
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=87.19 E-value=0.55 Score=51.56 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=24.1
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+++-+++|+||+-.-+|..-+..+.+.+..+
T Consensus 617 l~~p~iliLDE~Ts~LD~~te~~i~~~l~~~ 647 (694)
T TIGR03375 617 LRDPPILLLDEPTSAMDNRSEERFKDRLKRW 647 (694)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 5777899999998888876666666666665
No 477
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.17 E-value=1.1 Score=44.68 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=15.9
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.+..+++++|||||||+..
T Consensus 121 ~~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL 139 (343)
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3567999999999999953
No 478
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=87.16 E-value=0.77 Score=49.17 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=24.1
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+++-+++++||+-.-+|...+..+.+.+..+
T Consensus 492 ~~~~~ililDEpts~lD~~~~~~i~~~l~~~ 522 (576)
T TIGR02204 492 LKDAPILLLDEATSALDAESEQLVQQALETL 522 (576)
T ss_pred HhCCCeEEEeCcccccCHHHHHHHHHHHHHH
Confidence 5677899999999888877666676666665
No 479
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=87.14 E-value=1.5 Score=37.76 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=31.7
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHH
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
+.+-+++++||.-.-+|......+..++..+ . . +++++.--...+..
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~--~-til~~th~~~~~~~ 132 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY----P--G-TVILVSHDRYFLDQ 132 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----C--C-EEEEEECCHHHHHH
Confidence 4567889999999988877667777777665 1 2 55665544444433
No 480
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=87.13 E-value=0.12 Score=37.77 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=21.5
Q ss_pred hHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHh
Q 013189 174 HAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 174 ~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~ 208 (448)
+.++.-..|..+++.+++|+|||.. +=+++.++
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKSTl--lDAi~~~L 47 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKSTL--LDAIQTVL 47 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHHH--HHHHHHHH
Confidence 3333333456799999999999994 33444443
No 481
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.98 E-value=0.4 Score=46.56 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=20.6
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhh
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~ 209 (448)
...|+++.+|||||||+.+. .|.+++.
T Consensus 96 ~KSNILLiGPTGsGKTlLAq--TLAk~Ln 122 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQ--TLAKILN 122 (408)
T ss_pred eeccEEEECCCCCcHHHHHH--HHHHHhC
Confidence 45689999999999999553 5555654
No 482
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=86.80 E-value=6.2 Score=39.48 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=32.7
Q ss_pred CCeeEEEEecCCccCcCC--CHHHHHHHHHHcCCCCCCCceEEEEeccCChH
Q 013189 296 QMIRYLALDEADRMLDMG--FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~g--f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
...-++|||-||.+-|++ ..+.+.++-+.++ ...-.|.||++..+.
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~----~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLN----EPTIVIILSAPSCEK 161 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhC----CCceEEEEeccccHH
Confidence 456789999999998886 3355555555553 334578899987665
No 483
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=86.75 E-value=5.9 Score=45.10 Aligned_cols=132 Identities=11% Similarity=0.109 Sum_probs=93.1
Q ss_pred HHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHH--hhhhcccCCC------------------CCCCCCceEEEEc
Q 013189 171 VQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGI--MREQYVQRPR------------------GSRTVYPLALILA 230 (448)
Q Consensus 171 ~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l--~~~~~~~~~~------------------~~~~~~~~~lil~ 230 (448)
-|++.+..+...-||+--..|=-=.|+-..+.=+..+ +..++..+.. .-...+.++.+|.
T Consensus 731 k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~ 810 (1139)
T COG1197 731 KHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVH 810 (1139)
T ss_pred cHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEe
Confidence 4888888888888888877777777765433322211 1111111100 0112467899999
Q ss_pred CcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeChhHHHHHHhcccccCCCeeEEEEecC
Q 013189 231 PTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMIRYLALDEA 306 (448)
Q Consensus 231 PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEa 306 (448)
|..+-..++.+.++.+. +..++.+.+|-+...+..+.+. ...||||||. ++ ...++..+...+||+-|
T Consensus 811 NrV~~Ie~~~~~L~~LV--PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-----II-EtGIDIPnANTiIIe~A 882 (1139)
T COG1197 811 NRVESIEKKAERLRELV--PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-----II-ETGIDIPNANTIIIERA 882 (1139)
T ss_pred cchhhHHHHHHHHHHhC--CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-----ee-ecCcCCCCCceEEEecc
Confidence 99999999999999986 4578999999998766554443 3689999995 33 45678999999999999
Q ss_pred CccC
Q 013189 307 DRML 310 (448)
Q Consensus 307 h~ll 310 (448)
|++.
T Consensus 883 D~fG 886 (1139)
T COG1197 883 DKFG 886 (1139)
T ss_pred cccc
Confidence 9873
No 484
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.72 E-value=1.2 Score=46.21 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=33.7
Q ss_pred CCCcCCCCcccCC---CCHHHHHHHHHCCC---CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhh
Q 013189 139 NVPPAVNTFAEID---LGEALNLNIRRCKY---VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 139 ~~~~~~~~f~~~~---l~~~l~~~l~~~~~---~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 199 (448)
.+..|--.|++++ |+.+.-..+++.-- .-|.-+.+--|++ =+-+++.+|.|+|||+.+
T Consensus 210 ~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~H---VKGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 210 SIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKH---VKGILLYGPPGTGKTLIA 273 (744)
T ss_pred cccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccc---eeeEEEECCCCCChhHHH
Confidence 3445666888885 66666655554311 1111122222222 156999999999999964
No 485
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=86.71 E-value=9.3 Score=37.61 Aligned_cols=133 Identities=20% Similarity=0.287 Sum_probs=69.6
Q ss_pred eeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEc--CcHHHHHHHHHHHHHhcccCCcEEEE-EECCC
Q 013189 185 LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA--PTRELSSQIHVEAKKFSYQTGVKVVV-AYGGA 261 (448)
Q Consensus 185 ~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~--PtreLa~qi~~~~~~~~~~~~~~~~~-~~gg~ 261 (448)
+++++-.|+|||+. +.=|.+++... +-++++.+ -.|+=|..+.+. ++...++.++. -+|+.
T Consensus 142 il~vGVNG~GKTTT--IaKLA~~l~~~-----------g~~VllaA~DTFRAaAiEQL~~---w~er~gv~vI~~~~G~D 205 (340)
T COG0552 142 ILFVGVNGVGKTTT--IAKLAKYLKQQ-----------GKSVLLAAGDTFRAAAIEQLEV---WGERLGVPVISGKEGAD 205 (340)
T ss_pred EEEEecCCCchHhH--HHHHHHHHHHC-----------CCeEEEEecchHHHHHHHHHHH---HHHHhCCeEEccCCCCC
Confidence 78999999999995 44455554432 12244443 235554443333 33345666555 23333
Q ss_pred CHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCc-CCCHHHHHHHHHHcCCCCC--CCceEEEE
Q 013189 262 PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPP--GMRQTMLF 338 (448)
Q Consensus 262 ~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~--~~~q~i~~ 338 (448)
+..- ..+.++..+ -.++++|++|=|-||-. .+..+++++|..-++...+ +..-++.+
T Consensus 206 pAaV------------------afDAi~~Ak--ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvl 265 (340)
T COG0552 206 PAAV------------------AFDAIQAAK--ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVL 265 (340)
T ss_pred cHHH------------------HHHHHHHHH--HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEE
Confidence 3221 223333222 34566677777777643 2456777777776633211 11234444
Q ss_pred eccCChHHHHHHHHh
Q 013189 339 SATFPKEIQRLASDF 353 (448)
Q Consensus 339 SAT~~~~v~~l~~~~ 353 (448)
=||.-.+-..-++.|
T Consensus 266 DAttGqnal~QAk~F 280 (340)
T COG0552 266 DATTGQNALSQAKIF 280 (340)
T ss_pred EcccChhHHHHHHHH
Confidence 888866655555555
No 486
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=86.71 E-value=0.58 Score=42.23 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=25.7
Q ss_pred CCCHHHHhHhhhHh-cCCCeeEeccCCCCcchhh
Q 013189 167 KPTPVQRHAIPISI-GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~ 199 (448)
..++-|...+.... .+..++++++||||||+..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 45666777776544 6889999999999999853
No 487
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=86.70 E-value=6.8 Score=38.20 Aligned_cols=54 Identities=20% Similarity=0.341 Sum_probs=40.7
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHh
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF 353 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~ 353 (448)
+.+-+++++||--.=+|......+..++..+. .. .+|+++.-...++.+++...
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~----~~-~tiii~sH~l~~~~~~~d~i 202 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG----KD-KTIILSTHIMQEVEAICDRV 202 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc----CC-CEEEEEcCCHHHHHHhCCEE
Confidence 56778999999999888766677777777772 23 47777777777777777654
No 488
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=86.69 E-value=12 Score=40.91 Aligned_cols=146 Identities=16% Similarity=0.198 Sum_probs=82.3
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc----cCC-----c
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY----QTG-----V 252 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~----~~~-----~ 252 (448)
|--+|+.-..|-|||+..+ ..+.-+++.-. .-.+|+|+|-..|-+. +.++..+.. .++ +
T Consensus 282 GFGCILAHSMGLGKTlQVi-sF~diflRhT~----------AKtVL~ivPiNTlQNW-lsEfnmWiP~y~sD~~vrpR~F 349 (1387)
T KOG1016|consen 282 GFGCILAHSMGLGKTLQVI-SFSDIFLRHTK----------AKTVLVIVPINTLQNW-LSEFNMWIPKYFSDTGVRPRSF 349 (1387)
T ss_pred CcceeeeeccccCceeEEe-ehhHHHhhcCc----------cceEEEEEehHHHHHH-HHHhhhhcCCCcccCCCcccee
Confidence 4457888889999999743 33344444322 2249999999888554 455555432 222 4
Q ss_pred EEEEEECCCCHHHHHHHH-h---cCCcEEEeChhHHHHHHhc-----c--c-----------------------------
Q 013189 253 KVVVAYGGAPINQQLREL-E---RGVDILVATPGRLVDLLER-----A--R----------------------------- 292 (448)
Q Consensus 253 ~~~~~~gg~~~~~~~~~l-~---~~~~Ilv~TP~~L~~~l~~-----~--~----------------------------- 292 (448)
.+.++..+.....+..++ . ..-.|++.-.+.+.-++.. + +
T Consensus 350 ~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~A 429 (1387)
T KOG1016|consen 350 EVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSA 429 (1387)
T ss_pred EEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhcccccCCccccccccCCcccCCchhhhHHHHHHHHHHH
Confidence 566666665544333222 1 1224555555544322211 0 0
Q ss_pred ccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChH
Q 013189 293 VSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 293 ~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
+.-..-++||.||-|++-.. ...+...+..+ ...|++++...-+-..
T Consensus 430 L~~PGPDlVICDEGHrIKN~--~A~iS~aLk~I----rtrRRiVLTGYPLQNN 476 (1387)
T KOG1016|consen 430 LLEPGPDLVICDEGHRIKNI--TAEISMALKAI----RTRRRIVLTGYPLQNN 476 (1387)
T ss_pred hcCCCCCeEEecCCceeccc--hHHHHHHHHHh----hhceeEEEeccccccc
Confidence 00122468999999998653 24455566666 5567788777766444
No 489
>PHA00012 I assembly protein
Probab=86.67 E-value=10 Score=37.42 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=17.5
Q ss_pred eeEeccCCCCcchhhhhhHHHHH
Q 013189 185 LMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 185 ~li~a~TGsGKT~~~~lpil~~l 207 (448)
-++.+..|+|||+...--|+..+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L 26 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKL 26 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 46889999999998766555444
No 490
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.53 E-value=1.4 Score=39.11 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=33.5
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHH
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
..+-+++++||--.-+|......+..++..+. ..-.+++++..-...+.
T Consensus 111 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~----~~g~tiii~th~~~~~~ 159 (173)
T cd03230 111 LHDPELLILDEPTSGLDPESRREFWELLRELK----KEGKTILLSSHILEEAE 159 (173)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH----HCCCEEEEECCCHHHHH
Confidence 46678999999999999887788888887772 11235555554444433
No 491
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=86.50 E-value=3 Score=37.13 Aligned_cols=31 Identities=29% Similarity=0.231 Sum_probs=25.2
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+.+-+++++||.-.-+|......+..++..+
T Consensus 114 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~ 144 (178)
T cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLIFEV 144 (178)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 5677899999999999877667777777766
No 492
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=86.43 E-value=4.7 Score=40.99 Aligned_cols=120 Identities=13% Similarity=0.200 Sum_probs=81.8
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHH-------HHHhc--CCcEEEeChhHHHHHH----hcc
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL-------RELER--GVDILVATPGRLVDLL----ERA 291 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~-------~~l~~--~~~Ilv~TP~~L~~~l----~~~ 291 (448)
--+|+.|.-.+|..+...+..-... ..++..++|+.-..+.. ..+.. ...|++.|.+.+...+ ..+
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~ 165 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAENPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDN 165 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhh
Confidence 3689999999998877777664322 36788889987654431 11222 3478999998875332 111
Q ss_pred -----cccCCCeeEEEEecCCccCcC-CCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHH
Q 013189 292 -----RVSLQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRL 349 (448)
Q Consensus 292 -----~~~l~~v~~lVlDEah~ll~~-gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l 349 (448)
+-.. ++++|+||+++.+... ...+.+-.+++.+. ....|+|+.|...|.++..+
T Consensus 166 ~~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~---~~~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 166 EMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALL---ENGKQIVLTSDRPPKELNGL 225 (408)
T ss_pred hHHHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHH---hcCCEEEEEcCCCchhhccc
Confidence 1124 8999999999988654 46677778888774 33458999888888887643
No 493
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=86.43 E-value=6 Score=32.44 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=52.9
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHH---HhcC-CcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE---LERG-VDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~~-~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.++||.++++..+.++.+.+++ ....+..++++.+..+.... +.++ ..||++|.- ....+++..++
T Consensus 29 ~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~------~~~G~d~~~~~ 98 (131)
T cd00079 29 GKVLIFCPSKKMLDELAELLRK----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV------IARGIDLPNVS 98 (131)
T ss_pred CcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh------hhcCcChhhCC
Confidence 4589999999999999998887 35678888888775443332 3333 579998842 12356777888
Q ss_pred EEEEecCC
Q 013189 300 YLALDEAD 307 (448)
Q Consensus 300 ~lVlDEah 307 (448)
++|+.+.+
T Consensus 99 ~vi~~~~~ 106 (131)
T cd00079 99 VVINYDLP 106 (131)
T ss_pred EEEEeCCC
Confidence 88887775
No 494
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=86.23 E-value=0.77 Score=49.08 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=23.1
Q ss_pred HHHHhHhhhHhc--CCCeeEeccCCCCcchhhhhhHHHHH
Q 013189 170 PVQRHAIPISIG--GRDLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 170 ~~Q~~~i~~i~~--g~d~li~a~TGsGKT~~~~lpil~~l 207 (448)
+-|...+..++. .--+++++|||||||+.. -.++..+
T Consensus 302 ~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 302 PDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 344444444433 335889999999999863 3455544
No 495
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=86.21 E-value=2.5 Score=37.83 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=35.5
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHH
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLA 350 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~ 350 (448)
+.+-+++++||--.-+|......+..++..+.. .. .+++++.--..++..++
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~-~tiii~sh~~~~~~~~~ 171 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD---AG-KAVLLISSELDELLGLC 171 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH---CC-CEEEEEeCCHHHHHHhC
Confidence 567789999999999998777777777777621 12 35666655444554433
No 496
>PRK08506 replicative DNA helicase; Provisional
Probab=86.20 E-value=1.9 Score=45.05 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=70.4
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEE-EC
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVA-YG 259 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~-~g 259 (448)
.|.=+++.|.||.|||...+--+.+ +...+ ..++|++ .-.-..|+...+-... .++....+ .|
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~-~~~~g------------~~V~~fS-lEMs~~ql~~Rlla~~--s~v~~~~i~~~ 254 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALK-ALNQD------------KGVAFFS-LEMPAEQLMLRMLSAK--TSIPLQNLRTG 254 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHH-HHhcC------------CcEEEEe-CcCCHHHHHHHHHHHh--cCCCHHHHhcC
Confidence 3445888999999999865544443 32211 1255554 2234455554443321 12222111 12
Q ss_pred CCCHHHH------HHHHhcCCcEEEe-----ChhHHHHHHhcccccCCCeeEEEEecCCccCcCC----CHHHHHHHHHH
Q 013189 260 GAPINQQ------LRELERGVDILVA-----TPGRLVDLLERARVSLQMIRYLALDEADRMLDMG----FEPQIRKIVQQ 324 (448)
Q Consensus 260 g~~~~~~------~~~l~~~~~Ilv~-----TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~g----f~~~i~~i~~~ 324 (448)
..+..+. ...+.+. .+.|- |+..+...+++.......+++||||=.+.|...+ ...++..|...
T Consensus 255 ~l~~~e~~~~~~a~~~l~~~-~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~ 333 (472)
T PRK08506 255 DLDDDEWERLSDACDELSKK-KLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRG 333 (472)
T ss_pred CCCHHHHHHHHHHHHHHHcC-CeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHH
Confidence 2222111 1223333 34442 4444544444322223468999999999775322 23345555444
Q ss_pred cCCCC-CCCceEEEEeccCChHH
Q 013189 325 MDMPP-PGMRQTMLFSATFPKEI 346 (448)
Q Consensus 325 l~~~~-~~~~q~i~~SAT~~~~v 346 (448)
|+... ..++.++++|. ++..+
T Consensus 334 LK~lAkel~ipVi~lsQ-LnR~~ 355 (472)
T PRK08506 334 LKLLARELDIPIIALSQ-LNRSL 355 (472)
T ss_pred HHHHHHHhCCcEEEEee-cCcch
Confidence 42111 12455777664 44443
No 497
>PRK08840 replicative DNA helicase; Provisional
Probab=86.18 E-value=4.6 Score=42.06 Aligned_cols=150 Identities=13% Similarity=0.060 Sum_probs=68.7
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEE-EC
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVA-YG 259 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~-~g 259 (448)
.|.=+++.|.+|.|||+..+--+.+..... +-.++|++.= .-..|+..++-... .++....+ .|
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~~------------~~~v~~fSlE-Ms~~ql~~Rlla~~--s~v~~~~i~~~ 280 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMDQ------------DKPVLIFSLE-MPAEQLMMRMLASL--SRVDQTKIRTG 280 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHhC------------CCeEEEEecc-CCHHHHHHHHHHhh--CCCCHHHHhcC
Confidence 344578899999999996543333322221 1125555421 22344443332211 12221111 22
Q ss_pred CCCHHHHH------HHHhcCCcEEEe-C----hhHHHHHHhcccccCCCeeEEEEecCCccCcCC----CHHHHHHHHHH
Q 013189 260 GAPINQQL------RELERGVDILVA-T----PGRLVDLLERARVSLQMIRYLALDEADRMLDMG----FEPQIRKIVQQ 324 (448)
Q Consensus 260 g~~~~~~~------~~l~~~~~Ilv~-T----P~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~g----f~~~i~~i~~~ 324 (448)
.....++. ..+.....+.|- + +..+...+.+.+.....+++||||-.+.|...+ ...++..|...
T Consensus 281 ~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~ 360 (464)
T PRK08840 281 QLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRS 360 (464)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHH
Confidence 22222221 122122345443 3 334433333222222358999999999885222 23445666555
Q ss_pred cCCCC-CCCceEEEEeccCChHH
Q 013189 325 MDMPP-PGMRQTMLFSATFPKEI 346 (448)
Q Consensus 325 l~~~~-~~~~q~i~~SAT~~~~v 346 (448)
|+... ..++.+|++|- ++..+
T Consensus 361 LK~lAkel~ipVi~LsQ-LnR~~ 382 (464)
T PRK08840 361 LKALAKELNVPVVALSQ-LNRSL 382 (464)
T ss_pred HHHHHHHhCCeEEEEEe-cCccc
Confidence 53211 13466777774 44443
No 498
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=86.14 E-value=0.76 Score=44.05 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=21.4
Q ss_pred HHhHhhhHh-c-CCCeeEeccCCCCcchhhhhhHHHHH
Q 013189 172 QRHAIPISI-G-GRDLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 172 Q~~~i~~i~-~-g~d~li~a~TGsGKT~~~~lpil~~l 207 (448)
|.+.+..++ . +.-++++++||||||... -.++..+
T Consensus 68 ~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 68 NLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 444443333 2 345899999999999953 2344433
No 499
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=86.12 E-value=15 Score=36.40 Aligned_cols=158 Identities=12% Similarity=0.070 Sum_probs=0.0
Q ss_pred eeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHH------------------------------
Q 013189 185 LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRE------------------------------ 234 (448)
Q Consensus 185 ~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptre------------------------------ 234 (448)
+-+.++.|+|||+ ++-.|...+... ....-+|-+=|+..
T Consensus 59 igi~G~~GaGKST--l~~~l~~~l~~~---------g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~ 127 (332)
T PRK09435 59 IGITGVPGVGKST--FIEALGMHLIEQ---------GHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSS 127 (332)
T ss_pred EEEECCCCCCHHH--HHHHHHHHHHHC---------CCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCc
Q ss_pred -----HHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCcc
Q 013189 235 -----LSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (448)
Q Consensus 235 -----La~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~l 309 (448)
++..+.+.+..+...----+.+-+.|.......-...-..-|++..|+.-.++.....-.+...+++||==+|.+
T Consensus 128 ~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~ 207 (332)
T PRK09435 128 GTLGGVARKTRETMLLCEAAGYDVILVETVGVGQSETAVAGMVDFFLLLQLPGAGDELQGIKKGIMELADLIVINKADGD 207 (332)
T ss_pred ccccchHHHHHHHHHHHhccCCCEEEEECCCCccchhHHHHhCCEEEEEecCCchHHHHHHHhhhhhhhheEEeehhccc
Q ss_pred CcCCCHHHHHHHHHHcCCCCCCC----ceEEEEeccCChHHHHHHHHh
Q 013189 310 LDMGFEPQIRKIVQQMDMPPPGM----RQTMLFSATFPKEIQRLASDF 353 (448)
Q Consensus 310 l~~gf~~~i~~i~~~l~~~~~~~----~q~i~~SAT~~~~v~~l~~~~ 353 (448)
...+....+..+-..+....+.. ..++.+||+-...+.++....
T Consensus 208 ~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I 255 (332)
T PRK09435 208 NKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAI 255 (332)
T ss_pred chhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHH
No 500
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=86.12 E-value=1.2 Score=46.67 Aligned_cols=126 Identities=15% Similarity=0.202 Sum_probs=0.0
Q ss_pred eEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEc-CcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHH
Q 013189 186 MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA-PTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPIN 264 (448)
Q Consensus 186 li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~-PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~ 264 (448)
+++++-|+|||.+.-+-+=. .-|.. |+-+=|.+ ...|+.+....-+.+..+-......
T Consensus 42 lfsG~RGvGKTt~Ari~Aka--------------------lNC~~~~~~ePC~~-C~~Ck~I~~g~~~DviEiDaASn~g 100 (515)
T COG2812 42 LFSGPRGVGKTTIARILAKA--------------------LNCENGPTAEPCGK-CISCKEINEGSLIDVIEIDAASNTG 100 (515)
T ss_pred hhcCCCCcCchhHHHHHHHH--------------------hcCCCCCCCCcchh-hhhhHhhhcCCcccchhhhhhhccC
Q ss_pred HHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEecc---
Q 013189 265 QQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT--- 341 (448)
Q Consensus 265 ~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT--- 341 (448)
-+.-. .|.+-...... ..+.+.+||||+|+|.. .....+++-+..||++ +++.=||
T Consensus 101 VddiR-------------~i~e~v~y~P~-~~ryKVyiIDEvHMLS~----~afNALLKTLEEPP~h---V~FIlATTe~ 159 (515)
T COG2812 101 VDDIR-------------EIIEKVNYAPS-EGRYKVYIIDEVHMLSK----QAFNALLKTLEEPPSH---VKFILATTEP 159 (515)
T ss_pred hHHHH-------------HHHHHhccCCc-cccceEEEEecHHhhhH----HHHHHHhcccccCccC---eEEEEecCCc
Q ss_pred --CChHHHHHHHHh
Q 013189 342 --FPKEIQRLASDF 353 (448)
Q Consensus 342 --~~~~v~~l~~~~ 353 (448)
+|..+..-|..|
T Consensus 160 ~Kip~TIlSRcq~f 173 (515)
T COG2812 160 QKIPNTILSRCQRF 173 (515)
T ss_pred CcCchhhhhccccc
Done!