Query 013189
Match_columns 448
No_of_seqs 357 out of 2595
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 05:52:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.8E-54 6.2E-59 443.8 34.6 316 117-447 28-343 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 8.1E-48 2.8E-52 391.1 33.6 309 133-447 3-319 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 1.7E-45 5.8E-50 373.5 32.6 285 142-447 34-319 (410)
4 3i5x_A ATP-dependent RNA helic 100.0 4.2E-43 1.4E-47 370.8 30.2 288 152-447 79-385 (563)
5 3eiq_A Eukaryotic initiation f 100.0 4.7E-43 1.6E-47 355.4 28.9 287 140-447 35-323 (414)
6 1s2m_A Putative ATP-dependent 100.0 4E-42 1.4E-46 347.4 29.6 283 143-447 19-301 (400)
7 1xti_A Probable ATP-dependent 100.0 1.3E-41 4.5E-46 342.2 31.1 282 145-447 8-293 (391)
8 1wrb_A DJVLGB; RNA helicase, D 100.0 4.3E-43 1.5E-47 333.5 18.9 250 125-375 1-252 (253)
9 3fe2_A Probable ATP-dependent 100.0 3.5E-42 1.2E-46 325.2 22.3 225 132-365 16-240 (242)
10 3fht_A ATP-dependent RNA helic 100.0 3E-41 1E-45 341.7 29.9 284 140-447 20-309 (412)
11 1fuu_A Yeast initiation factor 100.0 3.3E-42 1.1E-46 346.7 20.9 284 142-447 18-302 (394)
12 3sqw_A ATP-dependent RNA helic 100.0 5.6E-41 1.9E-45 355.8 30.8 288 152-447 28-334 (579)
13 3pey_A ATP-dependent RNA helic 100.0 9.2E-41 3.2E-45 335.7 28.6 280 143-447 3-286 (395)
14 1hv8_A Putative ATP-dependent 100.0 2.6E-40 8.8E-45 329.2 30.3 275 145-447 6-281 (367)
15 3fmp_B ATP-dependent RNA helic 100.0 7.4E-42 2.5E-46 354.4 18.5 282 142-447 89-376 (479)
16 3iuy_A Probable ATP-dependent 100.0 3.3E-40 1.1E-44 308.6 20.4 218 136-362 10-228 (228)
17 3fmo_B ATP-dependent RNA helic 100.0 1.2E-39 4.1E-44 317.6 19.4 206 142-364 89-299 (300)
18 3bor_A Human initiation factor 100.0 4E-39 1.4E-43 303.3 19.3 211 139-363 24-235 (237)
19 3ber_A Probable ATP-dependent 100.0 6.9E-39 2.4E-43 304.0 20.8 208 142-363 40-248 (249)
20 2oxc_A Probable ATP-dependent 100.0 1E-38 3.4E-43 299.1 20.2 212 136-362 15-228 (230)
21 1vec_A ATP-dependent RNA helic 100.0 5.1E-38 1.8E-42 288.7 23.7 202 145-360 3-205 (206)
22 2z0m_A 337AA long hypothetical 100.0 1.8E-37 6.1E-42 305.3 27.8 259 152-447 1-259 (337)
23 2pl3_A Probable ATP-dependent 100.0 4.9E-38 1.7E-42 295.4 22.1 211 142-363 22-233 (236)
24 1q0u_A Bstdead; DEAD protein, 100.0 8E-39 2.8E-43 297.4 16.2 206 144-363 3-212 (219)
25 1qde_A EIF4A, translation init 100.0 5.6E-38 1.9E-42 292.4 20.7 211 140-365 9-219 (224)
26 3ly5_A ATP-dependent RNA helic 100.0 7E-38 2.4E-42 299.4 21.3 203 145-357 52-257 (262)
27 3dkp_A Probable ATP-dependent 100.0 1.3E-38 4.5E-43 301.0 14.7 222 132-365 12-243 (245)
28 2gxq_A Heat resistant RNA depe 100.0 1.8E-37 6.3E-42 285.1 21.6 205 146-363 2-206 (207)
29 1t6n_A Probable ATP-dependent 100.0 3.1E-37 1.1E-41 286.7 20.3 209 139-361 8-219 (220)
30 2v1x_A ATP-dependent DNA helic 100.0 1.9E-36 6.7E-41 320.2 28.8 269 147-447 23-310 (591)
31 3fho_A ATP-dependent RNA helic 100.0 7.5E-38 2.6E-42 326.6 16.3 282 141-447 115-400 (508)
32 3oiy_A Reverse gyrase helicase 100.0 1.4E-36 4.7E-41 308.9 19.0 251 155-437 9-286 (414)
33 1oyw_A RECQ helicase, ATP-depe 100.0 5.4E-36 1.9E-40 313.2 23.8 269 145-447 2-279 (523)
34 1tf5_A Preprotein translocase 100.0 3.5E-35 1.2E-39 312.9 15.6 262 162-446 79-474 (844)
35 3l9o_A ATP-dependent RNA helic 100.0 1.8E-34 6.2E-39 323.5 17.2 269 145-447 162-523 (1108)
36 2zj8_A DNA helicase, putative 100.0 9.3E-34 3.2E-38 307.7 22.2 267 146-447 2-313 (720)
37 4ddu_A Reverse gyrase; topoiso 100.0 9.2E-34 3.1E-38 317.7 22.5 244 162-437 74-343 (1104)
38 2va8_A SSO2462, SKI2-type heli 100.0 4.8E-33 1.7E-37 301.9 26.3 271 145-447 8-331 (715)
39 4a2p_A RIG-I, retinoic acid in 100.0 5.7E-33 1.9E-37 291.9 22.7 172 164-343 4-177 (556)
40 2ykg_A Probable ATP-dependent 100.0 2E-33 6.7E-38 304.0 19.2 179 157-343 3-184 (696)
41 2fsf_A Preprotein translocase 100.0 2.4E-33 8.3E-38 298.1 17.7 261 163-446 71-483 (853)
42 2p6r_A Afuhel308 helicase; pro 100.0 1.2E-33 4.1E-38 306.0 13.3 269 146-447 2-315 (702)
43 3tbk_A RIG-I helicase domain; 100.0 7.2E-32 2.4E-36 283.1 24.4 171 166-344 3-176 (555)
44 1gku_B Reverse gyrase, TOP-RG; 100.0 1.7E-33 5.9E-38 315.4 12.2 246 162-442 53-312 (1054)
45 1nkt_A Preprotein translocase 100.0 1.2E-32 4E-37 293.2 16.5 262 162-446 107-502 (922)
46 4a2q_A RIG-I, retinoic acid in 100.0 8.6E-32 2.9E-36 295.2 23.4 174 162-343 243-418 (797)
47 4a2w_A RIG-I, retinoic acid in 100.0 3.9E-31 1.3E-35 293.8 22.2 176 160-343 241-418 (936)
48 2xgj_A ATP-dependent RNA helic 100.0 1.3E-30 4.4E-35 290.0 26.1 251 162-447 82-425 (1010)
49 4a4z_A Antiviral helicase SKI2 100.0 9.8E-31 3.4E-35 290.9 23.1 156 164-346 37-192 (997)
50 4f92_B U5 small nuclear ribonu 100.0 7.6E-30 2.6E-34 295.6 23.6 274 152-447 911-1232(1724)
51 1wp9_A ATP-dependent RNA helic 100.0 6.3E-29 2.1E-33 255.1 27.6 169 167-353 9-180 (494)
52 4f92_B U5 small nuclear ribonu 100.0 3.3E-29 1.1E-33 290.3 24.5 274 164-446 76-396 (1724)
53 4gl2_A Interferon-induced heli 100.0 3.6E-30 1.2E-34 278.5 14.4 171 166-344 6-193 (699)
54 2eyq_A TRCF, transcription-rep 100.0 7.9E-28 2.7E-32 271.3 27.8 258 151-447 587-857 (1151)
55 1gm5_A RECG; helicase, replica 100.0 3E-28 1E-32 263.5 17.6 256 154-447 356-632 (780)
56 2whx_A Serine protease/ntpase/ 100.0 1.9E-29 6.5E-34 267.7 6.2 240 150-447 155-394 (618)
57 2oca_A DAR protein, ATP-depend 99.9 4.9E-28 1.7E-32 252.4 13.5 251 166-447 112-390 (510)
58 2jlq_A Serine protease subunit 99.9 3.9E-28 1.3E-32 249.5 11.9 223 164-440 1-224 (451)
59 3o8b_A HCV NS3 protease/helica 99.9 1.2E-28 4E-33 260.4 7.5 217 168-444 218-436 (666)
60 2xau_A PRE-mRNA-splicing facto 99.9 1.2E-26 4.2E-31 252.0 22.9 273 143-447 70-357 (773)
61 2wv9_A Flavivirin protease NS2 99.9 3.3E-28 1.1E-32 259.9 1.6 224 159-447 202-449 (673)
62 2fwr_A DNA repair protein RAD2 99.9 3.6E-26 1.2E-30 236.1 11.3 229 166-447 92-387 (472)
63 1yks_A Genome polyprotein [con 99.9 3.1E-27 1.1E-31 241.8 1.8 198 178-437 4-210 (440)
64 3b6e_A Interferon-induced heli 99.9 1.6E-25 5.4E-30 206.2 11.0 170 164-341 30-216 (216)
65 2z83_A Helicase/nucleoside tri 99.9 1.3E-25 4.3E-30 231.2 8.4 204 176-437 15-223 (459)
66 2v6i_A RNA helicase; membrane, 99.9 2.8E-24 9.5E-29 219.4 16.3 204 181-437 1-204 (431)
67 3llm_A ATP-dependent RNA helic 99.9 1.8E-24 6.2E-29 202.9 13.2 182 154-358 48-232 (235)
68 2ipc_A Preprotein translocase 99.9 3E-23 1E-27 220.4 22.4 131 162-310 75-215 (997)
69 3h1t_A Type I site-specific re 99.9 3.3E-24 1.1E-28 227.5 13.5 255 167-447 178-489 (590)
70 3rc3_A ATP-dependent RNA helic 99.9 1.5E-23 5.1E-28 223.6 15.2 221 170-447 143-363 (677)
71 1rif_A DAR protein, DNA helica 99.9 7.3E-23 2.5E-27 197.2 9.3 157 166-348 112-268 (282)
72 1z63_A Helicase of the SNF2/RA 99.9 1.4E-20 4.9E-25 195.5 20.7 246 167-447 37-385 (500)
73 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 1.6E-20 5.5E-25 208.2 19.0 166 154-344 251-440 (1038)
74 3dmq_A RNA polymerase-associat 99.8 2.1E-20 7.2E-25 208.1 12.4 158 166-342 152-316 (968)
75 2fz4_A DNA repair protein RAD2 99.8 5.6E-19 1.9E-23 165.7 14.9 139 166-345 92-231 (237)
76 3mwy_W Chromo domain-containin 99.8 5.3E-18 1.8E-22 185.7 23.6 255 166-447 235-615 (800)
77 1z3i_X Similar to RAD54-like; 99.8 3E-17 1E-21 175.5 27.2 159 167-342 55-230 (644)
78 3jux_A Protein translocase sub 99.8 4.6E-17 1.6E-21 170.5 25.3 253 166-443 74-513 (822)
79 3crv_A XPD/RAD3 related DNA he 99.7 1.2E-16 4.3E-21 167.8 11.6 129 167-311 3-187 (551)
80 1c4o_A DNA nucleotide excision 99.6 1.4E-14 4.9E-19 155.0 18.5 103 332-447 380-482 (664)
81 2vl7_A XPD; helicase, unknown 99.5 3.5E-15 1.2E-19 156.3 7.4 127 163-310 4-188 (540)
82 2d7d_A Uvrabc system protein B 99.4 7.5E-14 2.6E-18 149.3 5.5 257 154-447 170-488 (661)
83 4a15_A XPD helicase, ATP-depen 99.3 1.3E-12 4.6E-17 138.6 9.5 83 167-261 3-89 (620)
84 2p6n_A ATP-dependent RNA helic 99.1 3.4E-10 1.2E-14 102.1 8.5 89 351-447 9-97 (191)
85 1w36_D RECD, exodeoxyribonucle 99.0 3.8E-10 1.3E-14 119.6 7.0 145 169-341 151-298 (608)
86 2hjv_A ATP-dependent RNA helic 98.8 1.4E-08 4.7E-13 88.9 10.6 74 367-447 5-78 (163)
87 1t5i_A C_terminal domain of A 98.8 1.3E-08 4.5E-13 89.9 9.8 72 369-447 3-74 (172)
88 1fuk_A Eukaryotic initiation f 98.7 4E-08 1.4E-12 86.1 10.1 71 370-447 2-73 (165)
89 2rb4_A ATP-dependent RNA helic 98.7 2.5E-08 8.5E-13 88.3 8.8 74 367-447 3-77 (175)
90 2jgn_A DBX, DDX3, ATP-dependen 98.7 3.9E-08 1.3E-12 88.0 8.8 76 366-447 14-89 (185)
91 3i32_A Heat resistant RNA depe 98.4 6.3E-07 2.2E-11 86.3 9.4 70 371-447 2-71 (300)
92 3eaq_A Heat resistant RNA depe 98.4 6.7E-07 2.3E-11 81.6 8.4 69 372-447 6-74 (212)
93 2yjt_D ATP-dependent RNA helic 97.7 5.1E-08 1.7E-12 85.9 0.0 71 370-447 2-73 (170)
94 3upu_A ATP-dependent DNA helic 98.1 1.1E-05 3.9E-10 82.3 9.8 70 162-243 20-94 (459)
95 3e1s_A Exodeoxyribonuclease V, 98.0 2.3E-05 7.8E-10 82.1 10.8 127 166-340 188-314 (574)
96 2gk6_A Regulator of nonsense t 98.0 6.9E-05 2.4E-09 79.4 14.3 70 165-246 178-247 (624)
97 4b3f_X DNA-binding protein smu 97.9 2.1E-05 7.2E-10 83.8 9.4 67 167-246 189-256 (646)
98 2xzl_A ATP-dependent helicase 97.9 0.00011 3.6E-09 80.0 14.2 70 165-246 358-427 (802)
99 3lfu_A DNA helicase II; SF1 he 97.8 0.0018 6.2E-08 68.6 22.3 71 166-247 8-78 (647)
100 2wjy_A Regulator of nonsense t 97.8 0.00017 5.7E-09 78.4 13.4 70 165-246 354-423 (800)
101 1z5z_A Helicase of the SNF2/RA 97.5 0.00016 5.6E-09 68.3 7.4 64 379-447 92-156 (271)
102 3ec2_A DNA replication protein 97.2 0.0014 4.8E-08 57.4 9.3 19 181-199 37-55 (180)
103 2o0j_A Terminase, DNA packagin 96.9 0.0067 2.3E-07 60.0 12.1 71 167-248 163-233 (385)
104 3cpe_A Terminase, DNA packagin 96.5 0.016 5.6E-07 60.8 12.3 72 167-249 163-234 (592)
105 2kjq_A DNAA-related protein; s 96.5 0.0091 3.1E-07 50.7 8.2 19 181-199 35-53 (149)
106 3te6_A Regulatory protein SIR3 96.3 0.018 6.2E-07 55.4 10.1 43 296-342 131-173 (318)
107 3vkw_A Replicase large subunit 96.1 0.014 4.6E-07 58.7 8.6 87 183-312 162-248 (446)
108 1l8q_A Chromosomal replication 95.8 0.017 5.8E-07 55.5 7.5 18 182-199 37-54 (324)
109 1d2n_A N-ethylmaleimide-sensit 95.7 0.063 2.2E-06 50.0 11.0 50 296-345 123-178 (272)
110 2v1u_A Cell division control p 95.7 0.027 9.1E-07 55.0 8.6 19 181-199 43-61 (387)
111 3bos_A Putative DNA replicatio 95.7 0.0066 2.3E-07 55.1 3.8 19 181-199 51-69 (242)
112 2chg_A Replication factor C sm 95.6 0.16 5.4E-06 44.8 12.9 17 183-199 39-55 (226)
113 2orw_A Thymidine kinase; TMTK, 95.5 0.034 1.2E-06 48.9 7.6 39 182-233 3-41 (184)
114 1xx6_A Thymidine kinase; NESG, 95.4 0.035 1.2E-06 49.3 7.5 40 181-233 7-46 (191)
115 2z4s_A Chromosomal replication 95.2 0.052 1.8E-06 54.7 9.0 42 297-341 194-236 (440)
116 2qz4_A Paraplegin; AAA+, SPG7, 95.2 0.074 2.5E-06 48.9 9.4 18 182-199 39-56 (262)
117 1uaa_A REP helicase, protein ( 95.1 0.023 8E-07 60.5 6.4 71 167-248 2-72 (673)
118 2b8t_A Thymidine kinase; deoxy 95.1 0.037 1.3E-06 50.3 6.8 92 181-310 11-102 (223)
119 3h4m_A Proteasome-activating n 95.1 0.014 4.6E-07 54.9 4.0 53 145-199 14-68 (285)
120 3syl_A Protein CBBX; photosynt 95.0 0.02 7E-07 54.3 5.0 18 182-199 67-84 (309)
121 3kl4_A SRP54, signal recogniti 95.0 0.14 4.8E-06 51.3 11.1 55 296-354 178-235 (433)
122 2zpa_A Uncharacterized protein 95.0 0.029 9.8E-07 59.2 6.2 112 167-342 175-288 (671)
123 1xwi_A SKD1 protein; VPS4B, AA 94.8 0.13 4.6E-06 49.3 10.2 49 145-199 9-62 (322)
124 3u4q_A ATP-dependent helicase/ 94.7 0.034 1.2E-06 63.4 6.5 71 166-245 9-79 (1232)
125 2qgz_A Helicase loader, putati 94.5 0.056 1.9E-06 51.7 6.7 18 182-199 152-169 (308)
126 1pjr_A PCRA; DNA repair, DNA r 94.4 0.062 2.1E-06 57.7 7.5 71 166-247 10-80 (724)
127 3u61_B DNA polymerase accessor 94.4 0.35 1.2E-05 46.0 12.1 39 296-338 104-142 (324)
128 1njg_A DNA polymerase III subu 94.4 0.29 9.9E-06 43.6 10.9 16 184-199 47-62 (250)
129 3eie_A Vacuolar protein sortin 94.2 0.021 7.3E-07 54.9 3.1 49 145-199 15-68 (322)
130 1a5t_A Delta prime, HOLB; zinc 94.2 0.33 1.1E-05 46.7 11.6 33 168-200 3-42 (334)
131 2qby_A CDC6 homolog 1, cell di 94.2 0.049 1.7E-06 53.0 5.7 18 182-199 45-62 (386)
132 2hjv_A ATP-dependent RNA helic 94.2 0.35 1.2E-05 41.1 10.5 72 225-306 37-112 (163)
133 1fnn_A CDC6P, cell division co 94.1 0.14 4.9E-06 49.8 8.8 16 184-199 46-61 (389)
134 1sxj_E Activator 1 40 kDa subu 94.1 0.28 9.5E-06 47.2 10.7 42 295-341 132-173 (354)
135 2j9r_A Thymidine kinase; TK1, 94.0 0.077 2.6E-06 47.8 6.0 40 182-234 28-67 (214)
136 1jbk_A CLPB protein; beta barr 93.9 0.15 5.1E-06 43.8 7.6 18 182-199 43-60 (195)
137 2rb4_A ATP-dependent RNA helic 93.8 0.38 1.3E-05 41.4 10.0 72 224-305 35-110 (175)
138 2p6n_A ATP-dependent RNA helic 93.7 2.2 7.4E-05 37.3 15.0 72 224-305 55-130 (191)
139 1iqp_A RFCS; clamp loader, ext 93.7 0.27 9.3E-06 46.5 9.7 16 184-199 48-63 (327)
140 2w58_A DNAI, primosome compone 93.6 0.15 5.3E-06 44.8 7.2 17 183-199 55-71 (202)
141 2p65_A Hypothetical protein PF 93.3 0.094 3.2E-06 45.0 5.3 18 182-199 43-60 (187)
142 3eaq_A Heat resistant RNA depe 93.1 0.5 1.7E-05 42.2 9.9 69 225-303 33-105 (212)
143 1fuk_A Eukaryotic initiation f 93.0 0.64 2.2E-05 39.5 10.1 73 224-306 31-107 (165)
144 2qby_B CDC6 homolog 3, cell di 92.9 0.18 6.2E-06 49.0 7.1 18 182-199 45-62 (384)
145 1w4r_A Thymidine kinase; type 92.8 0.18 6.1E-06 44.7 6.2 39 181-232 19-57 (195)
146 3e2i_A Thymidine kinase; Zn-bi 92.7 0.23 7.7E-06 44.8 6.9 41 181-234 27-67 (219)
147 1t5i_A C_terminal domain of A 92.5 2.2 7.6E-05 36.4 13.0 72 225-306 33-108 (172)
148 3pey_A ATP-dependent RNA helic 92.5 2.3 7.9E-05 40.9 14.6 77 223-309 243-323 (395)
149 2zan_A Vacuolar protein sortin 92.4 0.23 7.7E-06 50.0 7.2 51 145-199 131-184 (444)
150 3pvs_A Replication-associated 92.1 0.3 1E-05 49.2 7.7 17 183-199 51-67 (447)
151 2qp9_X Vacuolar protein sortin 92.1 0.22 7.4E-06 48.5 6.5 18 182-199 84-101 (355)
152 3dm5_A SRP54, signal recogniti 92.1 1.1 3.7E-05 44.9 11.6 17 183-199 101-117 (443)
153 2orv_A Thymidine kinase; TP4A 92.0 0.28 9.6E-06 44.6 6.6 41 181-234 18-58 (234)
154 1sxj_C Activator 1 40 kDa subu 92.0 0.73 2.5E-05 44.2 10.1 38 296-338 109-146 (340)
155 3cf0_A Transitional endoplasmi 91.8 0.17 5.8E-06 47.9 5.3 54 145-199 12-66 (301)
156 3fht_A ATP-dependent RNA helic 91.6 2.1 7.2E-05 41.6 13.2 72 224-305 267-342 (412)
157 3t15_A Ribulose bisphosphate c 91.6 0.14 4.7E-06 48.5 4.3 17 183-199 37-53 (293)
158 1lv7_A FTSH; alpha/beta domain 91.5 0.7 2.4E-05 42.2 9.1 52 145-199 9-62 (257)
159 3pfi_A Holliday junction ATP-d 91.5 0.38 1.3E-05 46.0 7.4 17 183-199 56-72 (338)
160 1sxj_D Activator 1 41 kDa subu 91.5 0.54 1.8E-05 45.0 8.5 17 183-199 59-75 (353)
161 1sxj_A Activator 1 95 kDa subu 91.4 0.18 6.2E-06 51.8 5.3 41 296-342 147-189 (516)
162 3b9p_A CG5977-PA, isoform A; A 91.3 0.41 1.4E-05 44.8 7.4 52 145-199 18-71 (297)
163 1n0w_A DNA repair protein RAD5 91.2 0.34 1.2E-05 43.7 6.5 24 180-203 22-45 (243)
164 2dr3_A UPF0273 protein PH0284; 91.2 0.53 1.8E-05 42.5 7.7 52 181-246 22-73 (247)
165 2w0m_A SSO2452; RECA, SSPF, un 91.1 0.32 1.1E-05 43.4 6.1 21 180-200 21-41 (235)
166 3vfd_A Spastin; ATPase, microt 91.0 0.6 2.1E-05 45.8 8.5 18 182-199 148-165 (389)
167 1hqc_A RUVB; extended AAA-ATPa 90.9 0.72 2.5E-05 43.6 8.8 18 182-199 38-55 (324)
168 2chq_A Replication factor C sm 90.8 0.53 1.8E-05 44.2 7.7 39 146-199 15-55 (319)
169 1jr3_A DNA polymerase III subu 90.8 2.4 8.1E-05 40.7 12.5 16 184-199 40-55 (373)
170 2jgn_A DBX, DDX3, ATP-dependen 90.7 2 6.9E-05 37.2 10.8 71 224-304 47-121 (185)
171 2d7d_A Uvrabc system protein B 90.6 5 0.00017 42.3 15.7 76 224-309 446-525 (661)
172 4b4t_J 26S protease regulatory 90.6 0.23 8E-06 49.1 4.9 54 143-199 143-199 (405)
173 3i32_A Heat resistant RNA depe 90.6 1 3.4E-05 42.7 9.3 69 225-303 30-102 (300)
174 2gno_A DNA polymerase III, gam 90.4 0.85 2.9E-05 43.3 8.7 44 295-344 80-123 (305)
175 2i4i_A ATP-dependent RNA helic 90.4 1.3 4.4E-05 43.3 10.3 71 223-303 276-350 (417)
176 2cvh_A DNA repair and recombin 90.3 1.2 4.2E-05 39.2 9.2 21 181-201 19-39 (220)
177 1g5t_A COB(I)alamin adenosyltr 90.2 0.35 1.2E-05 42.8 5.2 52 296-351 119-172 (196)
178 2ehv_A Hypothetical protein PH 89.9 0.088 3E-06 47.9 1.2 48 295-346 133-185 (251)
179 2iut_A DNA translocase FTSK; n 89.6 2 6.7E-05 44.4 11.1 26 182-207 214-239 (574)
180 1sxj_B Activator 1 37 kDa subu 89.4 1.2 4.2E-05 41.7 9.0 16 184-199 44-59 (323)
181 4a1f_A DNAB helicase, replicat 89.2 0.44 1.5E-05 46.0 5.6 25 181-205 45-69 (338)
182 1cr0_A DNA primase/helicase; R 89.1 0.52 1.8E-05 44.3 6.0 23 179-201 32-54 (296)
183 1xti_A Probable ATP-dependent 89.0 4.6 0.00016 38.8 13.0 74 224-307 251-328 (391)
184 1hv8_A Putative ATP-dependent 88.9 4 0.00014 38.7 12.4 73 224-306 239-315 (367)
185 4b4t_L 26S protease subunit RP 88.9 0.21 7.2E-06 50.1 3.2 54 143-199 176-232 (437)
186 3m6a_A ATP-dependent protease 88.6 0.44 1.5E-05 49.2 5.4 19 181-199 107-125 (543)
187 2r6a_A DNAB helicase, replicat 88.5 0.96 3.3E-05 45.4 7.8 24 181-204 202-225 (454)
188 1w5s_A Origin recognition comp 88.5 0.32 1.1E-05 47.7 4.2 17 183-199 51-69 (412)
189 1c4o_A DNA nucleotide excision 87.9 7.1 0.00024 41.2 14.3 76 224-309 440-519 (664)
190 4b4t_H 26S protease regulatory 87.9 0.48 1.6E-05 47.6 5.0 54 143-199 204-260 (467)
191 2v1x_A ATP-dependent DNA helic 87.7 1.7 5.9E-05 45.2 9.3 72 223-304 267-342 (591)
192 2db3_A ATP-dependent RNA helic 87.5 2 6.7E-05 42.7 9.3 68 226-303 303-374 (434)
193 3i5x_A ATP-dependent RNA helic 87.2 2.2 7.5E-05 43.8 9.8 78 223-307 339-420 (563)
194 2j0s_A ATP-dependent RNA helic 87.2 7.4 0.00025 37.7 13.3 72 224-305 277-352 (410)
195 2ce7_A Cell division protein F 86.9 0.35 1.2E-05 49.0 3.4 17 183-199 50-66 (476)
196 1s2m_A Putative ATP-dependent 86.8 8.2 0.00028 37.2 13.3 72 224-305 259-334 (400)
197 3sqw_A ATP-dependent RNA helic 86.6 2.8 9.5E-05 43.3 10.2 77 224-307 289-369 (579)
198 2eyq_A TRCF, transcription-rep 86.4 1.4 5E-05 49.6 8.4 78 223-308 812-893 (1151)
199 1oyw_A RECQ helicase, ATP-depe 86.2 2.3 7.8E-05 43.5 9.2 71 225-305 238-312 (523)
200 2z43_A DNA repair and recombin 86.0 0.42 1.4E-05 45.8 3.2 23 181-203 106-128 (324)
201 3e70_C DPA, signal recognition 85.5 4.6 0.00016 38.6 10.4 53 298-354 212-265 (328)
202 2zr9_A Protein RECA, recombina 85.4 0.9 3.1E-05 44.0 5.4 22 181-202 60-81 (349)
203 3hu3_A Transitional endoplasmi 85.2 1.8 6E-05 44.0 7.6 18 182-199 238-255 (489)
204 1yks_A Genome polyprotein [con 85.1 1.2 4.1E-05 44.6 6.3 67 224-302 178-245 (440)
205 1nlf_A Regulatory protein REPA 85.1 0.84 2.9E-05 42.4 4.8 25 178-202 26-50 (279)
206 4b4t_I 26S protease regulatory 85.0 0.56 1.9E-05 46.7 3.6 54 143-199 177-233 (437)
207 3h75_A Periplasmic sugar-bindi 84.9 26 0.00088 32.9 15.9 196 224-440 4-244 (350)
208 2q6t_A DNAB replication FORK h 84.9 1.4 4.9E-05 44.0 6.7 25 181-205 199-223 (444)
209 1xp8_A RECA protein, recombina 84.6 2.8 9.7E-05 40.8 8.5 20 181-200 73-92 (366)
210 3hjh_A Transcription-repair-co 84.3 2.1 7E-05 43.4 7.6 52 181-248 13-64 (483)
211 2yka_B ORF57 protein, 52 kDa i 84.2 0.22 7.4E-06 27.5 0.0 15 2-16 8-22 (26)
212 4a74_A DNA repair and recombin 83.3 2.4 8.3E-05 37.4 7.0 21 180-200 23-43 (231)
213 3bh0_A DNAB-like replicative h 82.8 0.64 2.2E-05 44.3 3.0 25 181-205 67-91 (315)
214 3gk5_A Uncharacterized rhodane 82.3 1.1 3.7E-05 35.2 3.7 37 404-440 55-91 (108)
215 1r6b_X CLPA protein; AAA+, N-t 82.1 1.7 5.7E-05 46.7 6.3 19 181-199 206-224 (758)
216 3pxi_A Negative regulator of g 82.0 1.8 6.3E-05 46.4 6.6 17 184-200 523-539 (758)
217 2yjt_D ATP-dependent RNA helic 82.8 0.28 9.4E-06 42.1 0.0 72 224-305 31-106 (170)
218 2eyu_A Twitching motility prot 81.8 0.81 2.8E-05 42.4 3.2 28 179-208 22-49 (261)
219 1wp9_A ATP-dependent RNA helic 81.6 3.4 0.00011 40.7 8.0 74 224-307 362-447 (494)
220 4a15_A XPD helicase, ATP-depen 81.5 3.1 0.00011 43.5 7.9 41 404-447 448-488 (620)
221 4f4c_A Multidrug resistance pr 81.3 0.78 2.7E-05 52.6 3.4 28 179-208 1102-1129(1321)
222 3co5_A Putative two-component 81.2 0.82 2.8E-05 37.8 2.7 21 179-199 24-44 (143)
223 3g5j_A Putative ATP/GTP bindin 81.2 2.7 9.3E-05 33.8 5.9 37 405-441 90-127 (134)
224 2px0_A Flagellar biosynthesis 81.1 7.3 0.00025 36.5 9.6 55 296-353 181-236 (296)
225 2fna_A Conserved hypothetical 80.9 26 0.0009 32.7 13.8 28 298-325 138-168 (357)
226 1e9r_A Conjugal transfer prote 80.7 1.1 3.6E-05 44.7 3.8 43 181-236 52-94 (437)
227 2l8b_A Protein TRAI, DNA helic 80.6 1.1 3.8E-05 39.1 3.3 61 169-241 36-98 (189)
228 1vma_A Cell division protein F 80.5 9.3 0.00032 36.0 10.2 25 182-208 104-128 (306)
229 2oap_1 GSPE-2, type II secreti 80.3 1.1 3.8E-05 45.8 3.9 31 168-198 245-276 (511)
230 2oca_A DAR protein, ATP-depend 80.2 7.2 0.00025 39.3 10.0 74 225-307 349-426 (510)
231 3foj_A Uncharacterized protein 80.1 1.2 4.2E-05 34.2 3.2 36 404-439 56-91 (100)
232 2v6i_A RNA helicase; membrane, 80.1 2.2 7.6E-05 42.4 6.0 66 224-301 172-238 (431)
233 1wv9_A Rhodanese homolog TT165 79.9 1.5 5.2E-05 33.3 3.7 35 405-439 54-88 (94)
234 3iwh_A Rhodanese-like domain p 79.9 1.1 3.7E-05 35.0 2.9 36 404-439 56-91 (103)
235 3n70_A Transport activator; si 79.7 0.96 3.3E-05 37.5 2.7 21 180-200 22-42 (145)
236 2yhs_A FTSY, cell division pro 79.5 7.2 0.00025 39.5 9.4 58 297-354 375-435 (503)
237 3jvv_A Twitching mobility prot 79.1 1.5 5.1E-05 42.6 4.2 18 181-198 122-139 (356)
238 3eme_A Rhodanese-like domain p 79.0 1.2 4.1E-05 34.5 2.9 36 404-439 56-91 (103)
239 3cmu_A Protein RECA, recombina 78.7 1 3.5E-05 53.2 3.3 23 181-203 1426-1448(2050)
240 2xau_A PRE-mRNA-splicing facto 78.3 4.2 0.00014 43.8 7.8 74 224-303 304-393 (773)
241 2wv9_A Flavivirin protease NS2 78.1 2.5 8.6E-05 44.7 5.9 68 223-302 410-478 (673)
242 1ls1_A Signal recognition part 78.1 15 0.0005 34.4 10.7 19 181-199 97-115 (295)
243 3cf2_A TER ATPase, transitiona 78.0 1.5 5.1E-05 47.4 4.1 103 183-345 239-351 (806)
244 1qvr_A CLPB protein; coiled co 77.6 1.5 5.2E-05 47.8 4.1 18 182-199 191-208 (854)
245 2z0m_A 337AA long hypothetical 76.5 4.8 0.00017 37.6 7.0 69 224-306 221-293 (337)
246 3hix_A ALR3790 protein; rhodan 76.4 2.2 7.5E-05 33.2 3.7 37 404-440 52-89 (106)
247 2i1q_A DNA repair and recombin 76.4 3.1 0.0001 39.4 5.5 23 182-204 98-120 (322)
248 3cmu_A Protein RECA, recombina 75.7 2.8 9.6E-05 49.6 5.7 48 179-240 1078-1125(2050)
249 3nwn_A Kinesin-like protein KI 75.1 1.4 4.6E-05 42.9 2.6 25 175-199 96-122 (359)
250 3lda_A DNA repair protein RAD5 74.6 8.2 0.00028 37.9 8.2 20 182-201 178-197 (400)
251 3b85_A Phosphate starvation-in 74.5 2.9 9.8E-05 37.2 4.4 37 169-207 9-45 (208)
252 3bgw_A DNAB-like replicative h 73.7 1.3 4.4E-05 44.4 2.1 26 181-206 196-221 (444)
253 1pzn_A RAD51, DNA repair and r 73.6 8.1 0.00028 37.2 7.7 19 183-201 132-150 (349)
254 1bg2_A Kinesin; motor protein, 73.4 1.6 5.6E-05 41.7 2.6 25 176-200 70-96 (325)
255 3g1w_A Sugar ABC transporter; 73.2 54 0.0018 29.7 15.4 27 404-430 186-212 (305)
256 2whx_A Serine protease/ntpase/ 73.1 7.7 0.00026 40.5 7.9 67 224-302 356-423 (618)
257 3crv_A XPD/RAD3 related DNA he 72.8 18 0.00062 36.9 10.7 104 333-446 316-432 (551)
258 2fsx_A RV0390, COG0607: rhodan 72.7 3.8 0.00013 34.0 4.5 36 404-439 80-116 (148)
259 3hr8_A Protein RECA; alpha and 72.7 2.5 8.6E-05 41.0 3.8 19 181-199 60-78 (356)
260 3eiq_A Eukaryotic initiation f 72.6 2.4 8.1E-05 41.3 3.7 72 224-305 281-356 (414)
261 3egc_A Putative ribose operon 72.6 42 0.0014 30.3 12.3 185 226-430 11-211 (291)
262 2k0z_A Uncharacterized protein 72.4 4.3 0.00015 31.7 4.5 37 404-440 56-92 (110)
263 1p9r_A General secretion pathw 72.1 2.4 8.3E-05 42.1 3.6 18 181-198 166-183 (418)
264 2zfi_A Kinesin-like protein KI 72.0 1.8 6.3E-05 42.1 2.6 24 176-199 82-107 (366)
265 1u94_A RECA protein, recombina 71.8 4.9 0.00017 38.9 5.7 22 181-202 62-83 (356)
266 3rc3_A ATP-dependent RNA helic 71.8 12 0.00041 39.5 9.0 73 226-309 323-401 (677)
267 1v5w_A DMC1, meiotic recombina 71.6 3.2 0.00011 39.9 4.3 21 182-202 122-142 (343)
268 2h58_A Kinesin-like protein KI 71.5 1.9 6.6E-05 41.3 2.7 25 175-199 72-98 (330)
269 1gmx_A GLPE protein; transfera 71.5 2.4 8.4E-05 33.0 2.9 37 404-440 58-95 (108)
270 3b5x_A Lipid A export ATP-bind 71.5 4.7 0.00016 41.7 5.9 42 295-341 496-537 (582)
271 3b6u_A Kinesin-like protein KI 71.5 1.9 6.4E-05 42.1 2.6 24 176-199 94-119 (372)
272 2vvg_A Kinesin-2; motor protei 71.4 1.9 6.6E-05 41.7 2.6 23 177-199 83-107 (350)
273 1f9v_A Kinesin-like protein KA 71.3 2 6.8E-05 41.5 2.7 25 175-199 76-102 (347)
274 1goj_A Kinesin, kinesin heavy 71.2 2 6.7E-05 41.7 2.6 23 177-199 74-98 (355)
275 1t5c_A CENP-E protein, centrom 71.2 1.9 6.5E-05 41.7 2.6 24 176-199 70-95 (349)
276 2nr8_A Kinesin-like protein KI 71.1 1.9 6.5E-05 41.8 2.6 25 175-199 95-121 (358)
277 2gza_A Type IV secretion syste 71.1 1.7 5.7E-05 42.3 2.1 28 178-207 171-198 (361)
278 4gl2_A Interferon-induced heli 71.1 2.8 9.7E-05 44.2 4.1 75 223-303 400-488 (699)
279 3hgt_A HDA1 complex subunit 3; 71.0 4.8 0.00017 38.4 5.3 58 379-441 105-162 (328)
280 2y65_A Kinesin, kinesin heavy 71.0 2 6.8E-05 41.8 2.6 23 177-199 78-102 (365)
281 2r2a_A Uncharacterized protein 70.9 1.4 4.8E-05 39.0 1.4 48 298-347 88-137 (199)
282 3dc4_A Kinesin-like protein NO 70.9 1.8 6E-05 41.9 2.2 24 176-199 87-112 (344)
283 2jlq_A Serine protease subunit 70.8 5.3 0.00018 39.9 5.9 67 224-302 189-256 (451)
284 3gbj_A KIF13B protein; kinesin 70.8 2 6.7E-05 41.7 2.5 25 175-199 84-110 (354)
285 3lre_A Kinesin-like protein KI 70.7 2 6.9E-05 41.6 2.6 23 177-199 99-123 (355)
286 1x88_A Kinesin-like protein KI 70.5 1.8 6.2E-05 42.0 2.3 24 176-199 81-106 (359)
287 3bfn_A Kinesin-like protein KI 70.2 2 6.8E-05 42.2 2.4 22 178-199 93-116 (388)
288 3t0q_A AGR253WP; kinesin, alph 70.1 2 6.8E-05 41.6 2.4 25 175-199 77-103 (349)
289 2wbe_C Bipolar kinesin KRP-130 70.0 1.9 6.5E-05 42.1 2.3 24 176-199 93-118 (373)
290 2jtq_A Phage shock protein E; 70.0 4.7 0.00016 29.7 4.1 35 404-439 41-76 (85)
291 1v8k_A Kinesin-like protein KI 69.8 1.9 6.6E-05 42.6 2.3 23 177-199 148-172 (410)
292 3nhv_A BH2092 protein; alpha-b 69.7 2.9 9.9E-05 34.7 3.1 37 404-440 72-110 (144)
293 4a14_A Kinesin, kinesin-like p 69.6 2.2 7.5E-05 41.2 2.6 24 176-199 76-101 (344)
294 4b4t_M 26S protease regulatory 69.6 1.7 5.7E-05 43.4 1.8 55 142-199 175-232 (434)
295 2zts_A Putative uncharacterize 69.4 2.6 9E-05 37.7 3.0 53 181-246 29-81 (251)
296 1tq1_A AT5G66040, senescence-a 69.3 3 0.0001 33.8 3.0 37 404-440 82-119 (129)
297 4etp_A Kinesin-like protein KA 69.1 2.1 7.2E-05 42.3 2.4 25 175-199 132-158 (403)
298 2heh_A KIF2C protein; kinesin, 68.9 2.1 7.1E-05 42.0 2.3 24 176-199 127-152 (387)
299 3cob_A Kinesin heavy chain-lik 68.9 1.9 6.5E-05 42.0 2.0 25 175-199 71-97 (369)
300 2owm_A Nckin3-434, related to 68.8 2.3 8E-05 42.5 2.7 24 176-199 129-154 (443)
301 3flh_A Uncharacterized protein 68.6 2.2 7.4E-05 34.3 2.0 37 404-440 71-109 (124)
302 1qxn_A SUD, sulfide dehydrogen 68.5 3.3 0.00011 34.0 3.1 37 404-440 82-119 (137)
303 2hhg_A Hypothetical protein RP 68.3 3.3 0.00011 33.8 3.1 37 404-440 86-123 (139)
304 3u06_A Protein claret segregat 68.3 2.2 7.7E-05 42.2 2.4 25 175-199 130-156 (412)
305 2rep_A Kinesin-like protein KI 68.2 2.3 7.8E-05 41.6 2.4 25 175-199 107-133 (376)
306 2pt7_A CAG-ALFA; ATPase, prote 68.2 1.9 6.6E-05 41.3 1.9 27 179-207 168-194 (330)
307 1lvg_A Guanylate kinase, GMP k 67.5 2.6 9E-05 36.8 2.5 19 181-199 3-21 (198)
308 3o8b_A HCV NS3 protease/helica 67.5 6.1 0.00021 41.6 5.6 67 222-302 395-461 (666)
309 3d1p_A Putative thiosulfate su 67.4 3.8 0.00013 33.4 3.3 37 404-440 91-128 (139)
310 3hs3_A Ribose operon repressor 67.2 70 0.0024 28.6 15.4 174 226-430 13-203 (277)
311 3ksm_A ABC-type sugar transpor 66.9 45 0.0015 29.6 11.0 26 404-429 186-211 (276)
312 2vl7_A XPD; helicase, unknown 66.5 1.5 5E-05 45.2 0.6 32 404-438 384-415 (540)
313 4f4c_A Multidrug resistance pr 66.4 1.2 4.2E-05 51.0 0.1 31 295-325 570-600 (1321)
314 1vee_A Proline-rich protein fa 66.2 4.2 0.00014 33.1 3.3 36 404-439 74-110 (134)
315 1kgd_A CASK, peripheral plasma 66.0 2.1 7E-05 36.8 1.4 19 181-199 4-22 (180)
316 3fmp_B ATP-dependent RNA helic 65.7 1.3 4.4E-05 44.6 0.0 70 223-302 333-406 (479)
317 2v3c_C SRP54, signal recogniti 65.3 36 0.0012 33.7 10.6 17 183-199 100-116 (432)
318 2va8_A SSO2462, SKI2-type heli 65.0 23 0.00079 37.3 9.7 74 224-303 253-362 (715)
319 3ilm_A ALR3790 protein; rhodan 64.1 5.3 0.00018 32.9 3.6 37 404-440 56-93 (141)
320 4ag6_A VIRB4 ATPase, type IV s 63.9 4.2 0.00015 39.6 3.4 21 181-201 34-54 (392)
321 2ewv_A Twitching motility prot 63.6 2.7 9.1E-05 41.0 1.9 27 180-208 134-160 (372)
322 3nbx_X ATPase RAVA; AAA+ ATPas 62.5 5 0.00017 40.8 3.7 27 173-199 32-58 (500)
323 3io5_A Recombination and repai 62.5 11 0.00036 36.0 5.7 90 184-310 30-124 (333)
324 3hws_A ATP-dependent CLP prote 62.2 5.6 0.00019 38.2 3.9 19 181-199 50-68 (363)
325 2bjv_A PSP operon transcriptio 61.9 3.9 0.00014 37.3 2.7 19 181-199 28-46 (265)
326 3tb6_A Arabinose metabolism tr 61.8 89 0.003 27.9 12.2 38 385-430 187-226 (298)
327 2ykg_A Probable ATP-dependent 61.6 5.6 0.00019 41.9 4.1 78 224-307 399-489 (696)
328 1q57_A DNA primase/helicase; d 61.5 13 0.00043 37.6 6.6 25 181-205 241-265 (503)
329 3cmw_A Protein RECA, recombina 61.3 7.2 0.00025 45.5 5.1 123 182-347 1431-1572(1706)
330 1t6n_A Probable ATP-dependent 61.3 30 0.001 30.0 8.4 42 404-445 82-128 (220)
331 3k4h_A Putative transcriptiona 61.2 56 0.0019 29.3 10.6 27 404-430 191-217 (292)
332 3oiy_A Reverse gyrase helicase 61.2 14 0.00047 35.9 6.6 41 404-444 64-107 (414)
333 2j37_W Signal recognition part 60.9 47 0.0016 33.5 10.7 16 184-199 103-118 (504)
334 1z6g_A Guanylate kinase; struc 60.9 4 0.00014 36.2 2.4 19 180-198 21-39 (218)
335 3vaa_A Shikimate kinase, SK; s 60.4 3 0.0001 36.3 1.5 19 181-199 24-42 (199)
336 3iij_A Coilin-interacting nucl 60.3 3.2 0.00011 35.3 1.6 20 180-199 9-28 (180)
337 3mm4_A Histidine kinase homolo 60.1 81 0.0028 26.9 13.6 67 180-246 18-84 (206)
338 2ffh_A Protein (FFH); SRP54, s 58.4 81 0.0028 31.0 11.6 18 182-199 98-115 (425)
339 3uk6_A RUVB-like 2; hexameric 58.3 7 0.00024 37.4 3.8 19 182-200 70-88 (368)
340 3tau_A Guanylate kinase, GMP k 58.2 3.5 0.00012 36.3 1.5 19 181-199 7-25 (208)
341 3dmq_A RNA polymerase-associat 57.9 23 0.00078 39.0 8.3 75 224-307 504-584 (968)
342 3foz_A TRNA delta(2)-isopenten 57.8 3.3 0.00011 39.3 1.3 16 184-199 12-27 (316)
343 3jy6_A Transcriptional regulat 57.7 1E+02 0.0035 27.3 16.4 180 226-430 10-206 (276)
344 2qor_A Guanylate kinase; phosp 57.5 3.6 0.00012 36.0 1.4 21 179-199 9-29 (204)
345 3exa_A TRNA delta(2)-isopenten 57.4 3.4 0.00012 39.4 1.3 16 184-199 5-20 (322)
346 3a8t_A Adenylate isopentenyltr 57.3 3.4 0.00012 39.7 1.3 17 183-199 41-57 (339)
347 3kke_A LACI family transcripti 57.2 70 0.0024 29.1 10.6 27 404-430 196-222 (303)
348 1znw_A Guanylate kinase, GMP k 57.2 4.6 0.00016 35.4 2.2 22 178-199 16-37 (207)
349 2oxc_A Probable ATP-dependent 57.2 18 0.00062 31.9 6.2 43 404-446 92-139 (230)
350 1ixz_A ATP-dependent metallopr 56.7 3.5 0.00012 37.4 1.3 51 144-199 12-66 (254)
351 2j41_A Guanylate kinase; GMP, 56.6 3.8 0.00013 35.6 1.4 20 180-199 4-23 (207)
352 1zp6_A Hypothetical protein AT 56.3 2.8 9.5E-05 36.0 0.5 20 180-199 7-26 (191)
353 1ofh_A ATP-dependent HSL prote 56.2 12 0.00039 34.6 4.9 18 182-199 50-67 (310)
354 3tr0_A Guanylate kinase, GMP k 55.9 3.9 0.00013 35.4 1.4 19 181-199 6-24 (205)
355 2ze6_A Isopentenyl transferase 55.9 3.7 0.00013 37.5 1.3 15 185-199 4-18 (253)
356 3dbi_A Sugar-binding transcrip 55.7 93 0.0032 28.7 11.4 27 404-430 241-267 (338)
357 3trf_A Shikimate kinase, SK; a 55.5 4 0.00014 34.8 1.4 19 182-200 5-23 (185)
358 1ry6_A Internal kinesin; kines 55.4 4.7 0.00016 39.1 2.0 19 181-199 82-102 (360)
359 2zj8_A DNA helicase, putative 55.1 21 0.00072 37.7 7.2 73 224-302 238-343 (720)
360 3c3k_A Alanine racemase; struc 54.9 1.2E+02 0.004 27.1 12.8 27 404-430 183-209 (285)
361 3lw7_A Adenylate kinase relate 54.9 3.9 0.00014 34.0 1.2 16 184-199 3-18 (179)
362 3fe2_A Probable ATP-dependent 54.9 21 0.00071 31.8 6.3 43 404-446 102-148 (242)
363 3a00_A Guanylate kinase, GMP k 54.8 4.6 0.00016 34.7 1.7 16 183-198 2-17 (186)
364 3ice_A Transcription terminati 54.7 40 0.0014 33.1 8.4 40 168-209 157-199 (422)
365 3ney_A 55 kDa erythrocyte memb 54.7 4.3 0.00015 35.8 1.4 19 181-199 18-36 (197)
366 1ex7_A Guanylate kinase; subst 54.0 4.6 0.00016 35.2 1.5 16 183-198 2-17 (186)
367 3kta_A Chromosome segregation 54.0 5.4 0.00018 33.9 2.0 23 184-208 28-50 (182)
368 3c8u_A Fructokinase; YP_612366 53.7 5.9 0.0002 34.7 2.2 27 181-209 21-47 (208)
369 1urh_A 3-mercaptopyruvate sulf 53.6 24 0.00081 32.3 6.5 38 404-441 230-268 (280)
370 1ojl_A Transcriptional regulat 53.3 6.3 0.00022 37.0 2.5 19 181-199 24-42 (304)
371 2r44_A Uncharacterized protein 53.3 3.8 0.00013 38.8 1.0 22 178-199 42-63 (331)
372 2v9p_A Replication protein E1; 53.1 5.8 0.0002 37.5 2.2 27 180-208 124-150 (305)
373 4gp7_A Metallophosphoesterase; 53.0 3.4 0.00012 35.1 0.5 20 181-200 8-27 (171)
374 1qhx_A CPT, protein (chloramph 52.8 4.8 0.00016 34.0 1.4 18 182-199 3-20 (178)
375 2x8a_A Nuclear valosin-contain 52.4 2.6 8.9E-05 39.1 -0.4 53 144-199 6-61 (274)
376 1kag_A SKI, shikimate kinase I 52.3 5.4 0.00018 33.5 1.7 18 182-199 4-21 (173)
377 1iy2_A ATP-dependent metallopr 51.9 4.5 0.00015 37.3 1.2 17 183-199 74-90 (278)
378 3tg1_B Dual specificity protei 51.6 10 0.00035 31.6 3.3 37 404-440 93-138 (158)
379 3cmw_A Protein RECA, recombina 51.6 6.4 0.00022 46.0 2.6 23 181-203 731-753 (1706)
380 1j8m_F SRP54, signal recogniti 51.6 67 0.0023 29.8 9.4 18 182-199 98-115 (297)
381 2i3b_A HCR-ntpase, human cance 51.5 8 0.00027 33.6 2.7 29 295-323 103-133 (189)
382 1f2t_A RAD50 ABC-ATPase; DNA d 51.4 7 0.00024 32.4 2.2 23 184-208 25-47 (149)
383 3h1t_A Type I site-specific re 51.4 31 0.001 35.4 7.6 78 224-307 440-527 (590)
384 2qmh_A HPR kinase/phosphorylas 51.4 4.8 0.00016 35.6 1.2 19 181-199 33-51 (205)
385 1ye8_A Protein THEP1, hypothet 51.3 6.9 0.00023 33.6 2.2 15 184-198 2-16 (178)
386 2p6r_A Afuhel308 helicase; pro 51.1 25 0.00087 36.9 7.1 74 224-303 243-346 (702)
387 1s96_A Guanylate kinase, GMP k 50.9 5.4 0.00018 35.6 1.5 21 179-199 13-33 (219)
388 3ber_A Probable ATP-dependent 50.8 50 0.0017 29.5 8.2 42 404-445 111-156 (249)
389 4h1g_A Maltose binding protein 50.8 6.3 0.00021 42.0 2.2 25 175-199 454-480 (715)
390 2z83_A Helicase/nucleoside tri 50.7 8.4 0.00029 38.5 3.1 67 224-302 191-258 (459)
391 3tif_A Uncharacterized ABC tra 50.5 4.3 0.00015 36.7 0.8 31 295-325 161-191 (235)
392 2c9o_A RUVB-like 1; hexameric 50.4 11 0.00038 37.5 3.9 20 181-200 62-81 (456)
393 2ius_A DNA translocase FTSK; n 50.4 13 0.00044 37.8 4.3 25 181-205 166-190 (512)
394 3lnc_A Guanylate kinase, GMP k 50.1 4.8 0.00017 35.9 1.1 21 179-199 24-44 (231)
395 2gxq_A Heat resistant RNA depe 49.9 35 0.0012 29.1 6.8 42 403-444 71-114 (207)
396 3fho_A ATP-dependent RNA helic 49.4 3.1 0.00011 42.3 -0.4 71 224-304 358-432 (508)
397 1y63_A LMAJ004144AAA protein; 49.4 5.8 0.0002 33.9 1.4 19 181-199 9-27 (184)
398 4eun_A Thermoresistant glucoki 49.3 5.9 0.0002 34.4 1.5 19 181-199 28-46 (200)
399 1rj9_A FTSY, signal recognitio 49.0 8 0.00028 36.4 2.5 26 182-209 102-127 (304)
400 3crm_A TRNA delta(2)-isopenten 48.9 5.5 0.00019 38.0 1.3 16 184-199 7-22 (323)
401 3vkg_A Dynein heavy chain, cyt 48.9 9.3 0.00032 47.4 3.5 48 152-200 873-924 (3245)
402 3g85_A Transcriptional regulat 48.6 48 0.0016 29.8 7.8 27 404-430 187-213 (289)
403 1kht_A Adenylate kinase; phosp 48.5 5.9 0.0002 33.6 1.4 18 182-199 3-20 (192)
404 1ly1_A Polynucleotide kinase; 48.5 5.8 0.0002 33.3 1.3 16 184-199 4-19 (181)
405 1in4_A RUVB, holliday junction 48.3 14 0.00047 35.1 4.0 17 183-199 52-68 (334)
406 1u0j_A DNA replication protein 48.2 21 0.00071 32.9 5.0 44 154-200 73-122 (267)
407 3rot_A ABC sugar transporter, 47.9 1.3E+02 0.0044 27.0 10.8 26 404-429 187-212 (297)
408 3kb2_A SPBC2 prophage-derived 47.8 6 0.00021 32.9 1.3 16 184-199 3-18 (173)
409 3kta_B Chromosome segregation 47.8 12 0.00041 32.0 3.2 41 296-340 85-125 (173)
410 3gyb_A Transcriptional regulat 47.8 1E+02 0.0035 27.3 9.9 166 236-430 20-201 (280)
411 3tbk_A RIG-I helicase domain; 47.3 36 0.0012 34.0 7.3 40 404-443 52-95 (555)
412 3k1j_A LON protease, ATP-depen 47.1 16 0.00054 37.9 4.5 22 178-199 56-77 (604)
413 3miz_A Putative transcriptiona 47.1 1.3E+02 0.0045 27.0 10.7 171 234-430 31-222 (301)
414 2xxa_A Signal recognition part 47.0 1.6E+02 0.0054 28.9 11.7 17 183-199 101-117 (433)
415 3d3q_A TRNA delta(2)-isopenten 46.8 6.2 0.00021 37.9 1.3 16 184-199 9-24 (340)
416 2r62_A Cell division protease 46.7 5.1 0.00017 36.5 0.6 18 182-199 44-61 (268)
417 1qpz_A PURA, protein (purine n 46.7 1.5E+02 0.005 27.4 11.2 27 404-430 237-263 (340)
418 3b9q_A Chloroplast SRP recepto 46.3 8.1 0.00028 36.3 2.0 27 181-209 99-125 (302)
419 1um8_A ATP-dependent CLP prote 45.9 7.6 0.00026 37.5 1.8 18 182-199 72-89 (376)
420 3eph_A TRNA isopentenyltransfe 45.8 6.4 0.00022 38.8 1.2 15 185-199 5-19 (409)
421 1knq_A Gluconate kinase; ALFA/ 45.8 6 0.0002 33.3 0.9 18 182-199 8-25 (175)
422 4f67_A UPF0176 protein LPG2838 45.7 13 0.00044 34.3 3.3 38 404-441 181-219 (265)
423 3d8u_A PURR transcriptional re 45.7 1.3E+02 0.0045 26.4 10.3 27 404-430 180-206 (275)
424 3qf7_A RAD50; ABC-ATPase, ATPa 45.2 6.7 0.00023 38.0 1.3 17 184-200 25-41 (365)
425 1gku_B Reverse gyrase, TOP-RG; 45.2 21 0.00072 39.8 5.4 72 224-307 276-352 (1054)
426 3nwj_A ATSK2; P loop, shikimat 44.9 9 0.00031 35.0 2.0 19 181-199 47-65 (250)
427 2bdt_A BH3686; alpha-beta prot 44.8 7.2 0.00025 33.3 1.3 16 184-199 4-19 (189)
428 2cbz_A Multidrug resistance-as 44.8 6.2 0.00021 35.6 0.9 27 180-208 29-55 (237)
429 3asz_A Uridine kinase; cytidin 44.7 10 0.00034 33.0 2.3 24 182-207 6-29 (211)
430 4b4t_K 26S protease regulatory 44.5 5.2 0.00018 39.8 0.4 54 143-199 167-223 (428)
431 2qt1_A Nicotinamide riboside k 44.4 5 0.00017 35.0 0.2 23 177-199 16-38 (207)
432 1htw_A HI0065; nucleotide-bind 43.9 8.3 0.00028 32.4 1.5 26 181-208 32-57 (158)
433 2fep_A Catabolite control prot 43.8 1.8E+02 0.0061 26.0 11.3 27 404-430 194-220 (289)
434 3uie_A Adenylyl-sulfate kinase 43.7 6.9 0.00024 34.0 1.0 19 181-199 24-42 (200)
435 3iuy_A Probable ATP-dependent 43.6 28 0.00095 30.5 5.1 41 404-444 94-137 (228)
436 3cm0_A Adenylate kinase; ATP-b 43.6 5.7 0.0002 33.7 0.5 19 181-199 3-21 (186)
437 2w00_A HSDR, R.ECOR124I; ATP-b 43.5 95 0.0032 34.4 10.3 39 222-260 536-582 (1038)
438 3g5u_A MCG1178, multidrug resi 43.4 8.8 0.0003 43.8 2.0 30 296-325 543-572 (1284)
439 4a2p_A RIG-I, retinoic acid in 43.4 40 0.0014 33.7 6.9 40 404-443 55-98 (556)
440 3kjx_A Transcriptional regulat 43.1 1.8E+02 0.0062 26.8 11.2 38 385-430 235-272 (344)
441 4fcw_A Chaperone protein CLPB; 43.0 7.7 0.00026 36.0 1.3 18 183-200 48-65 (311)
442 3dmn_A Putative DNA helicase; 42.9 1.5E+02 0.005 24.8 9.6 50 383-437 45-94 (174)
443 3qk7_A Transcriptional regulat 42.8 1.8E+02 0.0063 25.9 13.4 27 404-430 186-212 (294)
444 3t61_A Gluconokinase; PSI-biol 42.7 8 0.00027 33.5 1.3 17 183-199 19-35 (202)
445 1gvn_B Zeta; postsegregational 42.7 8.3 0.00028 35.9 1.4 17 183-199 34-50 (287)
446 2ff7_A Alpha-hemolysin translo 42.6 6.6 0.00023 35.7 0.7 42 295-341 161-202 (247)
447 3gfo_A Cobalt import ATP-bindi 42.5 6.8 0.00023 36.4 0.8 31 295-325 159-189 (275)
448 3d8b_A Fidgetin-like protein 1 42.2 7.8 0.00027 37.2 1.2 19 181-199 116-134 (357)
449 1g8p_A Magnesium-chelatase 38 42.1 7.2 0.00025 36.9 0.9 18 182-199 45-62 (350)
450 2ghi_A Transport protein; mult 42.1 7.3 0.00025 35.7 0.9 41 296-341 172-212 (260)
451 3qks_A DNA double-strand break 41.9 12 0.0004 32.8 2.2 24 184-209 25-48 (203)
452 2pcj_A ABC transporter, lipopr 41.7 6.7 0.00023 35.0 0.6 31 295-325 156-186 (224)
453 4akg_A Glutathione S-transfera 41.6 11 0.00036 46.3 2.4 48 152-200 890-941 (2695)
454 2eg4_A Probable thiosulfate su 41.6 14 0.00047 32.9 2.7 37 404-440 184-220 (230)
455 2f1r_A Molybdopterin-guanine d 41.5 6 0.00021 33.8 0.2 24 184-209 4-27 (171)
456 3lwd_A 6-phosphogluconolactona 41.4 39 0.0013 30.1 5.7 28 280-307 44-71 (226)
457 3k9c_A Transcriptional regulat 41.1 1.2E+02 0.004 27.3 9.2 27 404-430 184-210 (289)
458 1tf7_A KAIC; homohexamer, hexa 41.0 50 0.0017 33.4 7.1 125 179-339 278-414 (525)
459 2pl3_A Probable ATP-dependent 40.9 32 0.0011 30.2 5.1 41 404-444 97-141 (236)
460 2h54_A Caspase-1; allosteric s 40.8 42 0.0014 28.8 5.6 43 404-447 43-96 (178)
461 1m7g_A Adenylylsulfate kinase; 40.7 9.8 0.00033 33.3 1.5 30 169-199 13-42 (211)
462 2c95_A Adenylate kinase 1; tra 40.7 9.8 0.00034 32.4 1.5 19 181-199 8-26 (196)
463 1e0c_A Rhodanese, sulfurtransf 40.5 15 0.0005 33.6 2.8 37 404-440 223-260 (271)
464 1mv5_A LMRA, multidrug resista 40.4 6.4 0.00022 35.6 0.3 30 296-325 156-185 (243)
465 1g6h_A High-affinity branched- 40.4 7.8 0.00027 35.4 0.9 31 295-325 169-199 (257)
466 2og2_A Putative signal recogni 40.2 11 0.00038 36.4 2.0 26 182-209 157-182 (359)
467 2v54_A DTMP kinase, thymidylat 40.1 8.9 0.00031 33.0 1.2 19 181-199 3-21 (204)
468 1b0u_A Histidine permease; ABC 40.0 7.9 0.00027 35.6 0.8 31 295-325 169-199 (262)
469 2ixe_A Antigen peptide transpo 39.9 7.9 0.00027 35.8 0.8 29 179-209 42-70 (271)
470 1zuh_A Shikimate kinase; alpha 39.9 9.4 0.00032 31.8 1.2 18 183-200 8-25 (168)
471 4a2q_A RIG-I, retinoic acid in 39.9 57 0.002 34.8 7.7 64 380-443 272-339 (797)
472 1vec_A ATP-dependent RNA helic 39.7 47 0.0016 28.2 5.9 41 404-444 71-116 (206)
473 3e4c_A Caspase-1; zymogen, inf 39.7 41 0.0014 31.5 5.8 42 405-447 61-113 (302)
474 4ddu_A Reverse gyrase; topoiso 39.7 61 0.0021 36.2 8.0 41 404-444 121-164 (1104)
475 3h5o_A Transcriptional regulat 39.6 2.3E+02 0.0077 26.0 12.9 27 404-430 238-264 (339)
476 3nh6_A ATP-binding cassette SU 39.6 5.6 0.00019 37.6 -0.3 41 295-340 206-246 (306)
477 2olj_A Amino acid ABC transpor 39.6 8 0.00027 35.6 0.8 29 179-209 47-75 (263)
478 1via_A Shikimate kinase; struc 39.6 11 0.00036 31.8 1.5 16 184-199 6-21 (175)
479 1gm5_A RECG; helicase, replica 39.5 56 0.0019 35.0 7.4 43 404-446 417-463 (780)
480 1z5z_A Helicase of the SNF2/RA 39.5 99 0.0034 28.1 8.4 73 225-306 114-192 (271)
481 2rhm_A Putative kinase; P-loop 39.4 9.4 0.00032 32.5 1.2 18 182-199 5-22 (193)
482 3auy_A DNA double-strand break 39.3 12 0.00042 36.0 2.1 22 185-208 28-49 (371)
483 1tev_A UMP-CMP kinase; ploop, 39.2 9.9 0.00034 32.3 1.3 17 183-199 4-20 (196)
484 1w36_B RECB, exodeoxyribonucle 39.1 30 0.001 39.0 5.5 61 184-245 18-78 (1180)
485 3o1i_D Periplasmic protein TOR 38.8 1.8E+02 0.0061 25.9 10.2 182 237-441 21-231 (304)
486 3brq_A HTH-type transcriptiona 38.7 2.1E+02 0.0071 25.3 10.9 27 404-430 199-225 (296)
487 1sgw_A Putative ABC transporte 38.6 10 0.00035 33.7 1.3 21 179-199 32-52 (214)
488 3h11_B Caspase-8; cell death, 38.6 42 0.0014 30.9 5.6 43 404-447 17-80 (271)
489 1pjr_A PCRA; DNA repair, DNA r 38.5 3.3E+02 0.011 28.4 13.4 41 404-445 351-391 (724)
490 3f9v_A Minichromosome maintena 38.4 13 0.00046 38.5 2.3 16 184-199 329-344 (595)
491 3l6u_A ABC-type sugar transpor 38.3 2.1E+02 0.0072 25.3 15.8 32 404-435 194-226 (293)
492 2bwj_A Adenylate kinase 5; pho 38.2 11 0.00037 32.2 1.4 19 181-199 11-29 (199)
493 1dbq_A Purine repressor; trans 38.0 1.1E+02 0.0036 27.3 8.4 27 404-430 186-212 (289)
494 2ihy_A ABC transporter, ATP-bi 37.9 8.6 0.0003 35.7 0.7 31 295-325 177-207 (279)
495 1cke_A CK, MSSA, protein (cyti 37.5 11 0.00037 33.1 1.3 17 183-199 6-22 (227)
496 3l9o_A ATP-dependent RNA helic 37.4 53 0.0018 36.7 7.1 72 225-302 443-553 (1108)
497 1nks_A Adenylate kinase; therm 37.3 11 0.00036 32.0 1.1 16 184-199 3-18 (194)
498 3aay_A Putative thiosulfate su 37.2 27 0.00091 31.9 4.0 36 403-438 76-113 (277)
499 3jvd_A Transcriptional regulat 37.1 2.5E+02 0.0085 25.8 15.0 187 219-431 60-257 (333)
500 3pxg_A Negative regulator of g 37.0 15 0.00051 36.7 2.4 27 173-199 190-218 (468)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.8e-54 Score=443.82 Aligned_cols=316 Identities=43% Similarity=0.756 Sum_probs=291.9
Q ss_pred cccccCCCCCCCCCcccccCCCCCCcCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcc
Q 013189 117 EEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 196 (448)
Q Consensus 117 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT 196 (448)
.....+++|+.|++++++.++.++|.++.+|++++|++.++++|.++||.+|||+|+++||.+++|+|++++|+||||||
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT 107 (434)
T 2db3_A 28 SGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKT 107 (434)
T ss_dssp CCCCCCTTGGGGGGSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHH
T ss_pred cCcccccChhhhcCceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCch
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcE
Q 013189 197 AAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDI 276 (448)
Q Consensus 197 ~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~I 276 (448)
++|++|+++.++..... ....++++|||+|||+||.|+++++++++...++++.+++||.....+...+..+++|
T Consensus 108 ~a~~lpil~~l~~~~~~-----~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~I 182 (434)
T 2db3_A 108 AAFLLPILSKLLEDPHE-----LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHV 182 (434)
T ss_dssp HHHHHHHHHHHHHSCCC-----CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSE
T ss_pred HHHHHHHHHHHHhcccc-----cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCE
Confidence 99999999998865421 2234678999999999999999999999988889999999999999999999999999
Q ss_pred EEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcC
Q 013189 277 LVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN 356 (448)
Q Consensus 277 lv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~ 356 (448)
+|+||++|++++.+..+.+.++++|||||||+|++++|.+++..|+..+.. +..+|+++||||++.+++.++..++.+
T Consensus 183 vv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~--~~~~q~l~~SAT~~~~~~~~~~~~l~~ 260 (434)
T 2db3_A 183 VIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTM--RPEHQTLMFSATFPEEIQRMAGEFLKN 260 (434)
T ss_dssp EEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTS--CSSCEEEEEESCCCHHHHHHHHTTCSS
T ss_pred EEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCC--CCCceEEEEeccCCHHHHHHHHHhccC
Confidence 999999999999988888999999999999999999999999999998743 456899999999999999999999999
Q ss_pred cEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecC
Q 013189 357 YIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHG 436 (448)
Q Consensus 357 ~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg 436 (448)
+..+.+.........+.|.+..+....|...|.+++... ..++||||+|++.|+.+++.|...|+++..+||
T Consensus 261 ~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~--------~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg 332 (434)
T 2db3_A 261 YVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQ--------ADGTIVFVETKRGADFLASFLSEKEFPTTSIHG 332 (434)
T ss_dssp CEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHC--------CTTEEEECSSHHHHHHHHHHHHHTTCCEEEEST
T ss_pred CEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhC--------CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeC
Confidence 999999888888889999999999999999999998875 334999999999999999999999999999999
Q ss_pred CCCHHHHHHHh
Q 013189 437 DRTQQRTSIEI 447 (448)
Q Consensus 437 ~~~q~eR~~~l 447 (448)
++++.+|++++
T Consensus 333 ~~~~~~R~~~l 343 (434)
T 2db3_A 333 DRLQSQREQAL 343 (434)
T ss_dssp TSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99999999876
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.1e-48 Score=391.05 Aligned_cols=309 Identities=60% Similarity=0.974 Sum_probs=273.2
Q ss_pred cccCCCCCCcCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhc
Q 013189 133 VETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQY 212 (448)
Q Consensus 133 v~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~ 212 (448)
+..++..+|.++.+|++++|++.+.++|..+||.+|+|+|+++||.++.++|+++++|||||||++|++|+++.+.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 45567788899999999999999999999999999999999999999999999999999999999999999998876432
Q ss_pred c--------cCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHH
Q 013189 213 V--------QRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL 284 (448)
Q Consensus 213 ~--------~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L 284 (448)
. .........++++|||+||++|+.|+++.++++....++++..++||.....+...+..+++|+|+||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 1 00001123457899999999999999999999998889999999999999999999988999999999999
Q ss_pred HHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEecc
Q 013189 285 VDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGR 364 (448)
Q Consensus 285 ~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~ 364 (448)
.+++....+.+..+++|||||||++++++|.+.+..++..+..+....+|+++||||++..+..++..++.++..+.+..
T Consensus 163 ~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 242 (417)
T 2i4i_A 163 VDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 242 (417)
T ss_dssp HHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-
T ss_pred HHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC
Confidence 99999888889999999999999999999999999999876555455789999999999999999999999999988888
Q ss_pred ccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHH
Q 013189 365 VGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTS 444 (448)
Q Consensus 365 ~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~ 444 (448)
.......+.+.+..+...+|...+.+++.... ...++||||++++.|+.+++.|...++.+..+||++++++|.
T Consensus 243 ~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~------~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~ 316 (417)
T 2i4i_A 243 VGSTSENITQKVVWVEESDKRSFLLDLLNATG------KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 316 (417)
T ss_dssp ---CCSSEEEEEEECCGGGHHHHHHHHHHTCC------TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHH
T ss_pred CCCCccCceEEEEEeccHhHHHHHHHHHHhcC------CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHH
Confidence 77788889999999998999999998887642 267899999999999999999999999999999999999999
Q ss_pred HHh
Q 013189 445 IEI 447 (448)
Q Consensus 445 ~~l 447 (448)
+++
T Consensus 317 ~~~ 319 (417)
T 2i4i_A 317 EAL 319 (417)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.7e-45 Score=373.55 Aligned_cols=285 Identities=32% Similarity=0.477 Sum_probs=259.3
Q ss_pred cCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCC
Q 013189 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRT 221 (448)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 221 (448)
++..+|++++|++.+++++..+||.+|+|+|+++|+.++.++|++++++||+|||++|++|+++.+... .
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~----------~ 103 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ----------V 103 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT----------S
T ss_pred cCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc----------c
Confidence 445689999999999999999999999999999999999999999999999999999999999876321 2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEE
Q 013189 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYL 301 (448)
Q Consensus 222 ~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~l 301 (448)
..+++|||+||++|+.|+++.+++++...++++..++||.....+...+..+++|+|+||++|.+++....+.+..+++|
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~v 183 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKML 183 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEE
Confidence 34679999999999999999999999888999999999999999988888899999999999999999888889999999
Q ss_pred EEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecc
Q 013189 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE 381 (448)
Q Consensus 302 VlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~ 381 (448)
||||||++++++|...+..++..+ +...|+++||||++.++..++..++.++..+.+.........+.+.+..+..
T Consensus 184 ViDEah~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (410)
T 2j0s_A 184 VLDEADEMLNKGFKEQIYDVYRYL----PPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVER 259 (410)
T ss_dssp EEETHHHHTSTTTHHHHHHHHTTS----CTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESS
T ss_pred EEccHHHHHhhhhHHHHHHHHHhC----ccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCc
Confidence 999999999999999999998877 6778999999999999999999999999988887777778888888888765
Q ss_pred cc-hHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 382 SD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 382 ~~-k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.. |...|.+++.... ..++||||++++.|+.+++.|...++.+..+||++++.+|++++
T Consensus 260 ~~~k~~~l~~~~~~~~-------~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~ 319 (410)
T 2j0s_A 260 EEWKFDTLCDLYDTLT-------ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIM 319 (410)
T ss_dssp TTHHHHHHHHHHHHHT-------SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHH
T ss_pred HHhHHHHHHHHHHhcC-------CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHH
Confidence 54 7888888887754 56899999999999999999999999999999999999999875
No 4
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.2e-43 Score=370.81 Aligned_cols=288 Identities=28% Similarity=0.429 Sum_probs=233.6
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHhhhHh--cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEE
Q 013189 152 LGEALNLNIRRCKYVKPTPVQRHAIPISI--GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALIL 229 (448)
Q Consensus 152 l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil 229 (448)
|++.+++++..+||.+|+|+|.++|+.++ .++|++++||||||||++|++|+++.+...... ....+++|||
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~------~~~~~~~lil 152 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD------SQYMVKAVIV 152 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS------STTSCCEEEE
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc------ccCCeeEEEE
Confidence 99999999999999999999999999998 678999999999999999999999998765421 2335689999
Q ss_pred cCcHHHHHHHHHHHHHhcc----cCCcEEEEEECCCCHHHHHHHHh-cCCcEEEeChhHHHHHHhcc-cccCCCeeEEEE
Q 013189 230 APTRELSSQIHVEAKKFSY----QTGVKVVVAYGGAPINQQLRELE-RGVDILVATPGRLVDLLERA-RVSLQMIRYLAL 303 (448)
Q Consensus 230 ~PtreLa~qi~~~~~~~~~----~~~~~~~~~~gg~~~~~~~~~l~-~~~~Ilv~TP~~L~~~l~~~-~~~l~~v~~lVl 303 (448)
+||++||.|+++.++++.. ...+.+..++||.....+...+. .+++|+|+||++|++++.+. ...+..+++|||
T Consensus 153 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 232 (563)
T 3i5x_A 153 APTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 232 (563)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEE
Confidence 9999999999999999753 23467888899999888877764 47999999999999999765 346889999999
Q ss_pred ecCCccCcCCCHHHHHHHHHHcC---CCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccc----cCcccceeEEE
Q 013189 304 DEADRMLDMGFEPQIRKIVQQMD---MPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRV----GSSTDLIVQRV 376 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~---~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~----~~~~~~i~q~~ 376 (448)
||||+|++++|.+.+..|+..+. ......+|+++||||++..+..++..++.++..+.+... ......+.+.+
T Consensus 233 DEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (563)
T 3i5x_A 233 DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 312 (563)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEE
T ss_pred eCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEE
Confidence 99999999999999999987763 222446899999999999999999999988776655432 22345566666
Q ss_pred EEeccc-chHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC---CCCeEEecCCCCHHHHHHHh
Q 013189 377 EFVHES-DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN---GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 377 ~~~~~~-~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~---g~~~~~iHg~~~q~eR~~~l 447 (448)
...... .+...++..+....... ....++||||+|++.|+.+++.|... ++.+..+||+|++.+|++++
T Consensus 313 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~ 385 (563)
T 3i5x_A 313 VISEKFANSIFAAVEHIKKQIKER--DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 385 (563)
T ss_dssp EEESSTTHHHHHHHHHHHHHHHHT--TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH
T ss_pred EECchhHhhHHHHHHHHHHHHhhc--CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Confidence 665442 33333443333322111 12678999999999999999999876 99999999999999999875
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.7e-43 Score=355.40 Aligned_cols=287 Identities=31% Similarity=0.477 Sum_probs=254.6
Q ss_pred CCcCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCC
Q 013189 140 VPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGS 219 (448)
Q Consensus 140 ~~~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~ 219 (448)
.+....+|++++|++.+.+.+.+++|.+|+++|+++|+.++.++|++++++||+|||++|++|+++.+...
T Consensus 35 ~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--------- 105 (414)
T 3eiq_A 35 WNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD--------- 105 (414)
T ss_dssp CCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT---------
T ss_pred ccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc---------
Confidence 34556789999999999999999999999999999999999999999999999999999999999877432
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh-cCCcEEEeChhHHHHHHhcccccCCCe
Q 013189 220 RTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE-RGVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 220 ~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Ilv~TP~~L~~~l~~~~~~l~~v 298 (448)
...+++||++||++|+.|+++.++++....++.+..++|+.....+...+. .+++|+|+||++|.+++....+.+..+
T Consensus 106 -~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~ 184 (414)
T 3eiq_A 106 -LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYI 184 (414)
T ss_dssp -SCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTC
T ss_pred -CCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 234569999999999999999999999888999999999999888877776 678999999999999999888889999
Q ss_pred eEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEE
Q 013189 299 RYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEF 378 (448)
Q Consensus 299 ~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~ 378 (448)
++|||||||++++++|...+..++..+ +...|+++||||++..+..++..++.++..+.+.........+.+.+..
T Consensus 185 ~~vViDEah~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (414)
T 3eiq_A 185 KMFVLDEADEMLSRGFKDQIYDIFQKL----NSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYIN 260 (414)
T ss_dssp CEEEECSHHHHHHTTTHHHHHHHHTTS----CTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEE
T ss_pred cEEEEECHHHhhccCcHHHHHHHHHhC----CCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEE
Confidence 999999999999999999999999888 6788999999999999999999999999998887777778888888877
Q ss_pred ecccc-hHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 379 VHESD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 379 ~~~~~-k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+...+ |...+.+++.... ..++||||++++.|+.+++.|...++.+..+||++++.+|.+++
T Consensus 261 ~~~~~~~~~~l~~~~~~~~-------~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~ 323 (414)
T 3eiq_A 261 VEREEWKLDTLCDLYETLT-------ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIM 323 (414)
T ss_dssp CSSSTTHHHHHHHHHHSSC-------CSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHH
T ss_pred eChHHhHHHHHHHHHHhCC-------CCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHH
Confidence 76544 7777777776543 56899999999999999999999999999999999999999875
No 6
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4e-42 Score=347.39 Aligned_cols=283 Identities=30% Similarity=0.460 Sum_probs=249.9
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCC
Q 013189 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (448)
Q Consensus 143 ~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 222 (448)
...+|++++|++.+.++|..+||.+|+|+|+++++.++.++|+++++|||+|||++|++|++..+... ..
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~----------~~ 88 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK----------LN 88 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT----------SC
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc----------cC
Confidence 45679999999999999999999999999999999999999999999999999999999999876432 23
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEE
Q 013189 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 223 ~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lV 302 (448)
++++||++||++|+.|+++.++++....++++..++|+.....+...+...++|+|+||++|.+++......+.++++||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vI 168 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFI 168 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEE
Confidence 45799999999999999999999988888999999999998888777778899999999999999988777899999999
Q ss_pred EecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEeccc
Q 013189 303 LDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHES 382 (448)
Q Consensus 303 lDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~ 382 (448)
|||||++++.+|...+..++..+ +...|+++||||++..+..++..++.++..+.+.. ......+.+.+..+...
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~----~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 243 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFL----PPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVEER 243 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTS----CSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECCGG
T ss_pred EeCchHhhhhchHHHHHHHHHhC----CcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEechh
Confidence 99999999888888888887776 66789999999999999999999988887665432 34556778888888888
Q ss_pred chHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 383 ~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.|...+..++.... .+++||||++++.|+.+++.|...++.+..+||++++.+|.+++
T Consensus 244 ~k~~~l~~~~~~~~-------~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 301 (400)
T 1s2m_A 244 QKLHCLNTLFSKLQ-------INQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVF 301 (400)
T ss_dssp GHHHHHHHHHHHSC-------CSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHH
T ss_pred hHHHHHHHHHhhcC-------CCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHH
Confidence 88888888887642 57899999999999999999999999999999999999999875
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.3e-41 Score=342.16 Aligned_cols=282 Identities=30% Similarity=0.444 Sum_probs=249.0
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013189 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
.+|++++|++.+.++|..+||.+|+|+|.++|+.++.++|+++++|||+|||++|++|++..+... ...+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~----------~~~~ 77 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV----------TGQV 77 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC----------TTCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc----------CCCe
Confidence 469999999999999999999999999999999999999999999999999999999999876432 2345
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccC-CcEEEEEECCCCHHHHHHHHhcC-CcEEEeChhHHHHHHhcccccCCCeeEEE
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERG-VDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~-~~Ilv~TP~~L~~~l~~~~~~l~~v~~lV 302 (448)
++||++||++|+.|+++.++++.... ++++..++|+.....+...+..+ ++|+|+||++|.+++......+.++++||
T Consensus 78 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vV 157 (391)
T 1xti_A 78 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFI 157 (391)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEE
T ss_pred eEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEE
Confidence 79999999999999999999997654 78999999999988877777654 79999999999999988888899999999
Q ss_pred EecCCccCcC-CCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEecccc-CcccceeEEEEEec
Q 013189 303 LDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVG-SSTDLIVQRVEFVH 380 (448)
Q Consensus 303 lDEah~ll~~-gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~-~~~~~i~q~~~~~~ 380 (448)
|||||+++++ +|...+..++..+ +...|+++||||++..+..++..++.++..+.+.... .....+.+.+..+.
T Consensus 158 iDEaH~~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (391)
T 1xti_A 158 LDECDKMLEQLDMRRDVQEIFRMT----PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLK 233 (391)
T ss_dssp ECSHHHHTSSHHHHHHHHHHHHTS----CSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECC
T ss_pred EeCHHHHhhccchHHHHHHHHhhC----CCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcC
Confidence 9999999885 7888888888777 6678999999999999999999999998887765443 34466778888888
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 381 ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 381 ~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
...|...+.+++.... ..++||||+++++|+.+++.|...++++..+||++++.+|.+++
T Consensus 234 ~~~~~~~l~~~l~~~~-------~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 293 (391)
T 1xti_A 234 DNEKNRKLFDLLDVLE-------FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRY 293 (391)
T ss_dssp GGGHHHHHHHHHHHSC-------CSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred chhHHHHHHHHHHhcC-------CCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Confidence 8889988988887652 67899999999999999999999999999999999999998875
No 8
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=4.3e-43 Score=333.47 Aligned_cols=250 Identities=54% Similarity=0.900 Sum_probs=210.5
Q ss_pred CCCCCCcccccCCCCCCc--CCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhh
Q 013189 125 FDAYEDIPVETSGENVPP--AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFP 202 (448)
Q Consensus 125 ~~~~~~~~v~~~~~~~~~--~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp 202 (448)
|+.|+++++..++...|. ++.+|++++|++.+.++|..+||.+|+|+|.++|+.++.++|+++++|||||||++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~ 80 (253)
T 1wrb_A 1 FDKYDSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIP 80 (253)
T ss_dssp --CCCCCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CcchhhCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHH
Confidence 567788888888888877 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChh
Q 013189 203 IISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPG 282 (448)
Q Consensus 203 il~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~ 282 (448)
++..+........ ......++++|||+||++|+.|+++.++++....++++..++||.....+...+..+++|+|+||+
T Consensus 81 ~l~~l~~~~~~~~-~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~ 159 (253)
T 1wrb_A 81 IINHLVCQDLNQQ-RYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPG 159 (253)
T ss_dssp HHHHHHTTCC-------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHH
T ss_pred HHHHHHhhccccc-cccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHH
Confidence 9998875432110 111234578999999999999999999999888889999999999988888888889999999999
Q ss_pred HHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEe
Q 013189 283 RLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAV 362 (448)
Q Consensus 283 ~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v 362 (448)
+|.+++....+.+.++++|||||||+|++++|..++..|+..+..+....+|+++||||++++++.++..++.+++.+.+
T Consensus 160 ~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 239 (253)
T 1wrb_A 160 RLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239 (253)
T ss_dssp HHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEE
Confidence 99999998888899999999999999999999999999999765543347899999999999999999999999999999
Q ss_pred ccccCcccceeEE
Q 013189 363 GRVGSSTDLIVQR 375 (448)
Q Consensus 363 ~~~~~~~~~i~q~ 375 (448)
+..+....++.|+
T Consensus 240 ~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 240 GRVGSTSDSIKQE 252 (253)
T ss_dssp C------------
T ss_pred CCCCCCcCCceec
Confidence 8887777777775
No 9
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=3.5e-42 Score=325.21 Aligned_cols=225 Identities=45% Similarity=0.763 Sum_probs=205.9
Q ss_pred ccccCCCCCCcCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhh
Q 013189 132 PVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQ 211 (448)
Q Consensus 132 ~v~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~ 211 (448)
.+...+...|.++.+|.+++|++.+.+++.++||.+|+|+|.++|+.++.|+|+++++|||||||++|++|++..+....
T Consensus 16 ~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~ 95 (242)
T 3fe2_A 16 EITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQP 95 (242)
T ss_dssp TEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSC
T ss_pred ceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcc
Confidence 34456777889999999999999999999999999999999999999999999999999999999999999999886543
Q ss_pred cccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcc
Q 013189 212 YVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA 291 (448)
Q Consensus 212 ~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~ 291 (448)
.. ....++++|||+||++|+.|+++.++++....++++..++||.....+...+..+++|+|+||++|.+++...
T Consensus 96 ~~-----~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~ 170 (242)
T 3fe2_A 96 FL-----ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG 170 (242)
T ss_dssp CC-----CTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHT
T ss_pred cc-----ccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 21 1234678999999999999999999999988899999999999999999999999999999999999999988
Q ss_pred cccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccc
Q 013189 292 RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRV 365 (448)
Q Consensus 292 ~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~ 365 (448)
...+.++++|||||||+|++++|...+..|+..+ +..+|+++||||++++++.++..++.+++.+.++..
T Consensus 171 ~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~----~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 171 KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI----RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp SCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTS----CSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred CCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhC----CccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 8889999999999999999999999999999888 668899999999999999999999999999988654
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3e-41 Score=341.72 Aligned_cols=284 Identities=26% Similarity=0.390 Sum_probs=245.7
Q ss_pred CCcCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcC--CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCC
Q 013189 140 VPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPR 217 (448)
Q Consensus 140 ~~~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~ 217 (448)
...+..+|++++|++.+++++.++||.+|+|+|.++|+.++.+ +|+++++|||+|||++|++|++..+...
T Consensus 20 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~------- 92 (412)
T 3fht_A 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA------- 92 (412)
T ss_dssp TTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-------
T ss_pred CccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-------
Confidence 3355788999999999999999999999999999999999987 9999999999999999999999877432
Q ss_pred CCCCCCceEEEEcCcHHHHHHHHHHHHHhccc-CCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhc-ccccC
Q 013189 218 GSRTVYPLALILAPTRELSSQIHVEAKKFSYQ-TGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVSL 295 (448)
Q Consensus 218 ~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~-~~~~l 295 (448)
...+++|||+||++|+.|+++.++++... .++.+....++....... ...++|+|+||++|.+++.+ ..+.+
T Consensus 93 ---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~ 166 (412)
T 3fht_A 93 ---NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDP 166 (412)
T ss_dssp ---SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCG
T ss_pred ---CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcCh
Confidence 23467999999999999999999998764 367888888876643321 33579999999999999966 45678
Q ss_pred CCeeEEEEecCCccCc-CCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeE
Q 013189 296 QMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ 374 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q 374 (448)
.++++|||||||++++ .+|...+..+...+ +..+|+++||||++..+..++..++.++..+.+.........+.+
T Consensus 167 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (412)
T 3fht_A 167 KKIKVFVLDEADVMIATQGHQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQ 242 (412)
T ss_dssp GGCCEEEEETHHHHHSTTTTHHHHHHHHHTS----CTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEE
T ss_pred hhCcEEEEeCHHHHhhcCCcHHHHHHHHhhC----CCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceE
Confidence 9999999999999987 68988888888887 667899999999999999999999999999888877777888888
Q ss_pred EEEEecc-cchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 375 RVEFVHE-SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 375 ~~~~~~~-~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+..+.. ..|...+.+++.... ..++||||++++.|+.+++.|...++.+..+||+|++.+|.+++
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~-------~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 309 (412)
T 3fht_A 243 YYVLCSSRDEKFQALCNLYGAIT-------IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVI 309 (412)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHS-------SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHH
T ss_pred EEEEcCChHHHHHHHHHHHhhcC-------CCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHH
Confidence 8777754 456777777777653 67899999999999999999999999999999999999999875
No 11
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3.3e-42 Score=346.67 Aligned_cols=284 Identities=31% Similarity=0.462 Sum_probs=189.0
Q ss_pred cCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCC
Q 013189 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRT 221 (448)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 221 (448)
++..+|++++|++.+.+.+..+||.+|+|+|+++++.++.++|+++++|||+|||++|++|++..+... .
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~----------~ 87 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS----------V 87 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT----------C
T ss_pred cccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc----------C
Confidence 445679999999999999999999999999999999999999999999999999999999999876432 2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEE
Q 013189 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYL 301 (448)
Q Consensus 222 ~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~l 301 (448)
..+++||++||++|+.|+++.++++....++++..++|+.....+...+. +++|+|+||++|.+.+....+.+.++++|
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~v 166 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMF 166 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEE
Confidence 34679999999999999999999998888899999999998877766655 58999999999999998888888999999
Q ss_pred EEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecc
Q 013189 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE 381 (448)
Q Consensus 302 VlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~ 381 (448)
|+||||++++++|...+..++..+ +...|+++||||++..+..++..++.++..+.+.........+.+.+..+..
T Consensus 167 IiDEah~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (394)
T 1fuu_A 167 ILDEADEMLSSGFKEQIYQIFTLL----PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEE 242 (394)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHS----CTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------
T ss_pred EEEChHHhhCCCcHHHHHHHHHhC----CCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCc
Confidence 999999999999999999999988 6678999999999999999999999999888877666666677776666654
Q ss_pred cc-hHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 382 SD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 382 ~~-k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+ |...+.+++.... ..++||||+++++|+.+++.|...++.+..+||++++.+|++++
T Consensus 243 ~~~~~~~l~~~~~~~~-------~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 302 (394)
T 1fuu_A 243 EEYKYECLTDLYDSIS-------VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIM 302 (394)
T ss_dssp -------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHhcCC-------CCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHH
Confidence 43 6666777666542 56899999999999999999999999999999999999998765
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=5.6e-41 Score=355.81 Aligned_cols=288 Identities=28% Similarity=0.434 Sum_probs=234.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHhhhHh--cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEE
Q 013189 152 LGEALNLNIRRCKYVKPTPVQRHAIPISI--GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALIL 229 (448)
Q Consensus 152 l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil 229 (448)
|++.+++++..+||.+|+|+|.++|+.++ .++|++++||||+|||++|++|+++.+...... ....+++|||
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~------~~~~~~~lvl 101 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD------SQYMVKAVIV 101 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS------STTSCCEEEE
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc------ccCCCeEEEE
Confidence 99999999999999999999999999999 789999999999999999999999988765421 2335789999
Q ss_pred cCcHHHHHHHHHHHHHhcc----cCCcEEEEEECCCCHHHHHHHHhc-CCcEEEeChhHHHHHHhcc-cccCCCeeEEEE
Q 013189 230 APTRELSSQIHVEAKKFSY----QTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERA-RVSLQMIRYLAL 303 (448)
Q Consensus 230 ~PtreLa~qi~~~~~~~~~----~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~TP~~L~~~l~~~-~~~l~~v~~lVl 303 (448)
+||++|+.|+++.++++.. ...+.+..++||.....+...+.. +++|+|+||++|++++.+. ...+..+++|||
T Consensus 102 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lVi 181 (579)
T 3sqw_A 102 APTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 181 (579)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEE
Confidence 9999999999999999852 345678889999998888877754 7999999999999999765 456899999999
Q ss_pred ecCCccCcCCCHHHHHHHHHHcCC---CCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccc----cCcccceeEEE
Q 013189 304 DEADRMLDMGFEPQIRKIVQQMDM---PPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRV----GSSTDLIVQRV 376 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~---~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~----~~~~~~i~q~~ 376 (448)
||||+|++++|.+.+..|+..+.. ..+..+|+++||||+++.+..++..++.++..+.+... ......+.+.+
T Consensus 182 DEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 261 (579)
T 3sqw_A 182 DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 261 (579)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEE
T ss_pred EChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEE
Confidence 999999999999999999887732 22346899999999999999999999998776665432 22345566666
Q ss_pred EEeccc-chHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC---CCCeEEecCCCCHHHHHHHh
Q 013189 377 EFVHES-DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN---GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 377 ~~~~~~-~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~---g~~~~~iHg~~~q~eR~~~l 447 (448)
...... .+...+++.+....... ....++||||+|++.|+.+++.|... ++.+..+||+|++.+|.+++
T Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~ 334 (579)
T 3sqw_A 262 VISEKFANSIFAAVEHIKKQIKER--DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 334 (579)
T ss_dssp EEESSTTHHHHHHHHHHHHHHHHT--TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH
T ss_pred EEecchhhhHHHHHHHHHHHHhhc--CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHH
Confidence 666542 33333333333322110 12678999999999999999999886 99999999999999999875
No 13
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=9.2e-41 Score=335.75 Aligned_cols=280 Identities=30% Similarity=0.431 Sum_probs=241.7
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcC--CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCC
Q 013189 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSR 220 (448)
Q Consensus 143 ~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~ 220 (448)
...+|++++|++.+++++..++|.+|+|+|.++++.++.+ +|+++++|||+|||++|++|++..+...
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~---------- 72 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE---------- 72 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT----------
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC----------
Confidence 3578999999999999999999999999999999999987 9999999999999999999999876432
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeE
Q 013189 221 TVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 221 ~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~ 300 (448)
..++++||++||++|+.|+++.++++....++.+...+++...... ...++|+|+||++|.+++......+.++++
T Consensus 73 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 148 (395)
T 3pey_A 73 DASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKI 148 (395)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCE
T ss_pred CCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCE
Confidence 2346799999999999999999999988888888888877543221 235899999999999999888888999999
Q ss_pred EEEecCCccCc-CCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEe
Q 013189 301 LALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFV 379 (448)
Q Consensus 301 lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~ 379 (448)
|||||||++++ ++|...+..+...+ +...|+++||||+++.+..++..++.++..+.+.........+.+.+..+
T Consensus 149 iIiDEah~~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (395)
T 3pey_A 149 FVLDEADNMLDQQGLGDQCIRVKRFL----PKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDC 224 (395)
T ss_dssp EEEETHHHHHHSTTHHHHHHHHHHTS----CTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEEC
T ss_pred EEEEChhhhcCccccHHHHHHHHHhC----CCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEc
Confidence 99999999987 67888888888887 66789999999999999999999999988888777777777788877776
Q ss_pred cc-cchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 380 HE-SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 380 ~~-~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.. ..|...+..++.... ..++||||++++.|+.+++.|...++.+..+||++++.+|.+++
T Consensus 225 ~~~~~~~~~l~~~~~~~~-------~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~ 286 (395)
T 3pey_A 225 KNEADKFDVLTELYGLMT-------IGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLI 286 (395)
T ss_dssp SSHHHHHHHHHHHHTTTT-------SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcc-------CCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHH
Confidence 44 445555555554432 67899999999999999999999999999999999999999875
No 14
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.6e-40 Score=329.20 Aligned_cols=275 Identities=36% Similarity=0.564 Sum_probs=244.2
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcC-CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCC
Q 013189 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
.+|++++|++.+.+++.++||.+|+|+|+++|+.++++ +++++++|||+|||++|++|++..+... .+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-----------~~ 74 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-----------NG 74 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-----------SS
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-----------CC
Confidence 57999999999999999999999999999999999987 7999999999999999999998766421 24
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEE
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVl 303 (448)
+++||++||++|+.|+++.++++....++++..++|+.....+...+. .++|+|+||++|.+.+......+.++++||+
T Consensus 75 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 75 IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred CcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 579999999999999999999998888899999999999887776665 6899999999999999888788999999999
Q ss_pred ecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccc
Q 013189 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~ 383 (448)
||||++.+++|...+..++..+ +...|+++||||++..+..++..++.++..+... ....+.+.+..+...+
T Consensus 154 DEah~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 225 (367)
T 1hv8_A 154 DEADEMLNMGFIKDVEKILNAC----NKDKRILLFSATMPREILNLAKKYMGDYSFIKAK----INANIEQSYVEVNENE 225 (367)
T ss_dssp ETHHHHHTTTTHHHHHHHHHTS----CSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC----SSSSSEEEEEECCGGG
T ss_pred eCchHhhhhchHHHHHHHHHhC----CCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec----CCCCceEEEEEeChHH
Confidence 9999999999999999999887 6678999999999999999999998887766543 2346677777888888
Q ss_pred hHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 384 k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
|...+.+++.. ...++||||++++.|+.+++.|...++.+..+||++++.+|++++
T Consensus 226 ~~~~l~~~l~~--------~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 281 (367)
T 1hv8_A 226 RFEALCRLLKN--------KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVI 281 (367)
T ss_dssp HHHHHHHHHCS--------TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHH
T ss_pred HHHHHHHHHhc--------CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHH
Confidence 88888887762 267899999999999999999999999999999999999999875
No 15
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=7.4e-42 Score=354.35 Aligned_cols=282 Identities=26% Similarity=0.397 Sum_probs=177.4
Q ss_pred cCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcC--CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCC
Q 013189 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGS 219 (448)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~ 219 (448)
.+..+|.+++|++.++++|..+||.+|+|+|.++|+.++.+ +|++++|+||||||++|++|++..+...
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~--------- 159 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--------- 159 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT---------
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc---------
Confidence 34678999999999999999999999999999999999986 9999999999999999999999877432
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHhccc-CCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhc-ccccCCC
Q 013189 220 RTVYPLALILAPTRELSSQIHVEAKKFSYQ-TGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVSLQM 297 (448)
Q Consensus 220 ~~~~~~~lil~PtreLa~qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~-~~~~l~~ 297 (448)
...+++|||+||++|+.|+++.++++... .++.+...+++....... ...++|+|+||++|++++.+ ..+.+.+
T Consensus 160 -~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 235 (479)
T 3fmp_B 160 -NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (479)
T ss_dssp -SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGG
T ss_pred -CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCccc
Confidence 23467999999999999999999998754 367777777776543221 23579999999999999976 4567899
Q ss_pred eeEEEEecCCccCc-CCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEE
Q 013189 298 IRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRV 376 (448)
Q Consensus 298 v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~ 376 (448)
+++|||||||+|++ ++|...+..++..+ +..+|+|+||||++..+..++..++.++..+.+.........+.|.+
T Consensus 236 ~~~iViDEah~~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 311 (479)
T 3fmp_B 236 IKVFVLDEADVMIATQGHQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYY 311 (479)
T ss_dssp CCEEEECCHHHHHTSTTHHHHHHHHHTTS----CTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-------------
T ss_pred CCEEEEECHHHHhhcCCcHHHHHHHHhhC----CccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEE
Confidence 99999999999987 67888888888777 67799999999999999999999999999998887777778888887
Q ss_pred EEecc-cchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 377 EFVHE-SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 377 ~~~~~-~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
..+.. ..|...|..++.... ..++||||++++.|+.+++.|...++.+..+||++++.+|.+++
T Consensus 312 ~~~~~~~~~~~~l~~~~~~~~-------~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~ 376 (479)
T 3fmp_B 312 VLCSSRDEKFQALCNLYGAIT-------IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVI 376 (479)
T ss_dssp ------------------------------------------------------------------------
T ss_pred EEeCCHHHHHHHHHHHHhhcc-------CCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHH
Confidence 77754 456666666666543 56799999999999999999999999999999999999998775
No 16
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.3e-40 Score=308.57 Aligned_cols=218 Identities=39% Similarity=0.621 Sum_probs=189.2
Q ss_pred CCCCCCcCCCCccc-CCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhccc
Q 013189 136 SGENVPPAVNTFAE-IDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQ 214 (448)
Q Consensus 136 ~~~~~~~~~~~f~~-~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~ 214 (448)
+....|++..+|.+ +++++.+++++.++||.+|+|+|+++|+.+++++|+++++|||||||++|++|++..+......
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~- 88 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS- 88 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch-
Confidence 45567888999999 7999999999999999999999999999999999999999999999999999999887643211
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhccccc
Q 013189 215 RPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVS 294 (448)
Q Consensus 215 ~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~ 294 (448)
.....++++||++||++|+.|+++.++++. ..++++..++||.....+...+.++++|+|+||++|.+++......
T Consensus 89 ---~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~ 164 (228)
T 3iuy_A 89 ---REQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVN 164 (228)
T ss_dssp -------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCC
T ss_pred ---hhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcC
Confidence 112346789999999999999999999986 4578899999999988888888899999999999999999888888
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEe
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAV 362 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v 362 (448)
+.++++|||||||++++++|...+..++..+ +..+|+++||||+++++.+++..++.+|+.+.|
T Consensus 165 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~----~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 165 LRSITYLVIDEADKMLDMEFEPQIRKILLDV----RPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp CTTCCEEEECCHHHHHHTTCHHHHHHHHHHS----CSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred cccceEEEEECHHHHhccchHHHHHHHHHhC----CcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 9999999999999999999999999999998 667899999999999999999999999988764
No 17
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=317.59 Aligned_cols=206 Identities=28% Similarity=0.457 Sum_probs=182.9
Q ss_pred cCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcC--CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCC
Q 013189 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGS 219 (448)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~ 219 (448)
.+..+|++++|++.++++|..+||.+||++|.++||.++.+ +|++++||||||||++|++|+++.+...
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~--------- 159 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--------- 159 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT---------
T ss_pred CCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc---------
Confidence 35689999999999999999999999999999999999987 9999999999999999999999987532
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHhccc-CCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhc-ccccCCC
Q 013189 220 RTVYPLALILAPTRELSSQIHVEAKKFSYQ-TGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVSLQM 297 (448)
Q Consensus 220 ~~~~~~~lil~PtreLa~qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~-~~~~l~~ 297 (448)
..+|++|||+|||+||.|+++.++++... .++.+..++++....... ..+++|||+||++|++++.+ ..+++.+
T Consensus 160 -~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 160 -NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp -SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred -CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 33578999999999999999999999865 368888888887654322 44689999999999999976 5567899
Q ss_pred eeEEEEecCCccCc-CCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEecc
Q 013189 298 IRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGR 364 (448)
Q Consensus 298 v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~ 364 (448)
+++|||||||+|++ ++|...+..|+..+ +..+|+++||||++.++..++..++.+|+.+.+.+
T Consensus 236 l~~lVlDEad~l~~~~~~~~~~~~i~~~~----~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 236 IKVFVLDEADVMIATQGHQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp CSEEEETTHHHHHHSTTHHHHHHHHHTTS----CTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred ceEEEEeCHHHHhhccCcHHHHHHHHHhC----CCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 99999999999998 68999999998888 67899999999999999999999999999988753
No 18
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=4e-39 Score=303.33 Aligned_cols=211 Identities=35% Similarity=0.529 Sum_probs=179.3
Q ss_pred CCCcCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCC
Q 013189 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 218 (448)
Q Consensus 139 ~~~~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~ 218 (448)
+.+++..+|++++|++.+++++..+||.+|+++|.++|+.++.++|+++++|||||||++|++|+++.+...
T Consensus 24 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-------- 95 (237)
T 3bor_A 24 NWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-------- 95 (237)
T ss_dssp ---CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT--------
T ss_pred CCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--------
Confidence 345667889999999999999999999999999999999999999999999999999999999999877432
Q ss_pred CCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcC-CcEEEeChhHHHHHHhcccccCCC
Q 013189 219 SRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERG-VDILVATPGRLVDLLERARVSLQM 297 (448)
Q Consensus 219 ~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-~~Ilv~TP~~L~~~l~~~~~~l~~ 297 (448)
...+++||++||++|+.|+++.+++++...++.+..++||.....+...+..+ ++|+|+||++|.+++....+.+.+
T Consensus 96 --~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 96 --FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp --SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred --CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 23467999999999999999999999888889999999998887777777666 899999999999999888788999
Q ss_pred eeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEec
Q 013189 298 IRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG 363 (448)
Q Consensus 298 v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~ 363 (448)
+++|||||||++++++|...+..++..+ +..+|+++||||+++++.+++..++.+|+.+.+.
T Consensus 174 ~~~lViDEah~~~~~~~~~~l~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 174 IKMFVLDEADEMLSRGFKDQIYEIFQKL----NTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp CCEEEEESHHHHHHTTCHHHHHHHHHHS----CTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred CcEEEECCchHhhccCcHHHHHHHHHhC----CCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999998 6678999999999999999999999999988764
No 19
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=6.9e-39 Score=304.05 Aligned_cols=208 Identities=38% Similarity=0.623 Sum_probs=191.3
Q ss_pred cCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCC
Q 013189 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRT 221 (448)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 221 (448)
.+..+|++++|++.+.+++..+||.+|+++|.++|+.+++++|++++++||||||++|++|++..+....
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~---------- 109 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP---------- 109 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC----------
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC----------
Confidence 3467899999999999999999999999999999999999999999999999999999999999886542
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhc-ccccCCCeeE
Q 013189 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVSLQMIRY 300 (448)
Q Consensus 222 ~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~-~~~~l~~v~~ 300 (448)
..+++||++||++|+.|+++.++++....++++..++||.....+...+..+++|+|+||++|.+++.+ ..+.+.++++
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~ 189 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKY 189 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCE
Confidence 246799999999999999999999988888999999999998888888888999999999999999986 4567899999
Q ss_pred EEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEec
Q 013189 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG 363 (448)
Q Consensus 301 lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~ 363 (448)
|||||||++++++|...+..++..+ +..+|+++||||++.+++++++.++.+|+.+.+.
T Consensus 190 lViDEah~l~~~~~~~~l~~i~~~~----~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 190 LVMDEADRILNMDFETEVDKILKVI----PRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHSS----CSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred EEEcChhhhhccChHHHHHHHHHhC----CCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999988 6678999999999999999999999999988663
No 20
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1e-38 Score=299.15 Aligned_cols=212 Identities=31% Similarity=0.537 Sum_probs=184.7
Q ss_pred CCCCCCcCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccC
Q 013189 136 SGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR 215 (448)
Q Consensus 136 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~ 215 (448)
+++..+.+..+|++++|++.+.+++.++||.+|+++|.++|+.++.++|++++++||+|||++|++|++..+...
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----- 89 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE----- 89 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----
Confidence 455666777899999999999999999999999999999999999999999999999999999999999877543
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccC-CcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhccccc
Q 013189 216 PRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVS 294 (448)
Q Consensus 216 ~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~ 294 (448)
..++++||++||++|+.|+++.++++.... ++++..++||.....+...+ .+++|+|+||++|.+++....+.
T Consensus 90 -----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~ 163 (230)
T 2oxc_A 90 -----NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLN 163 (230)
T ss_dssp -----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSC
T ss_pred -----CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcc
Confidence 224679999999999999999999997654 78999999999887766655 46899999999999999888778
Q ss_pred CCCeeEEEEecCCccCcCC-CHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEe
Q 013189 295 LQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAV 362 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~g-f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v 362 (448)
+.++++|||||||++++++ |...+..|+..+ +..+|+++||||+++++.+++..++.+|+.+.+
T Consensus 164 ~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~----~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 164 PGSIRLFILDEADKLLEEGSFQEQINWIYSSL----PASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp GGGCCEEEESSHHHHHSTTSSHHHHHHHHHHS----CSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred cccCCEEEeCCchHhhcCcchHHHHHHHHHhC----CCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 8999999999999999998 999999999998 667899999999999999999999999988765
No 21
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=5.1e-38 Score=288.68 Aligned_cols=202 Identities=31% Similarity=0.586 Sum_probs=185.9
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013189 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
.+|++++|++.+++++..+||.+|+|+|.++++.+++++|+++++|||+|||++|++|++..+... ..++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~----------~~~~ 72 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK----------KDNI 72 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT----------SCSC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc----------CCCe
Confidence 469999999999999999999999999999999999999999999999999999999999876432 2346
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccC-CcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEE
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVl 303 (448)
++||++||++|+.|+++.++++.... ++++..++|+.....+...+..+++|+|+||++|.+++.+....+.++++||+
T Consensus 73 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 73 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 79999999999999999999998665 78899999999988888888888999999999999999888888999999999
Q ss_pred ecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEE
Q 013189 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFL 360 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i 360 (448)
||||++++.+|...+..++..+ +..+|+++||||++.++.+++..++.+|+.+
T Consensus 153 DEah~~~~~~~~~~l~~i~~~~----~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 153 DEADKLLSQDFVQIMEDIILTL----PKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHS----CTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred EChHHhHhhCcHHHHHHHHHhC----CccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999999999998 6678999999999999999999999998765
No 22
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.8e-37 Score=305.30 Aligned_cols=259 Identities=32% Similarity=0.508 Sum_probs=223.1
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcC
Q 013189 152 LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP 231 (448)
Q Consensus 152 l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 231 (448)
|++.|.+++.++||.+|+|+|+++++.+++++++++++|||+|||++|++|++.. +.++||++|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----------------~~~~liv~P 64 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----------------GMKSLVVTP 64 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----------------TCCEEEECS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----------------cCCEEEEeC
Confidence 5789999999999999999999999999999999999999999999999998862 245999999
Q ss_pred cHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCc
Q 013189 232 TRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD 311 (448)
Q Consensus 232 treLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~ 311 (448)
|++|+.|+++.++++....++++..++|+.....+...+.. ++|+|+||++|.+++....+.+.++++||+||||++.+
T Consensus 65 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 143 (337)
T 2z0m_A 65 TRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFE 143 (337)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhc
Confidence 99999999999999988888999999999998877776654 89999999999999988777889999999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHHHHHHH
Q 013189 312 MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDL 391 (448)
Q Consensus 312 ~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~l 391 (448)
++|...+..++..+ +...++++||||++..+..++..++.++..+... .....+.+.+..+....+. ..+.
T Consensus 144 ~~~~~~~~~~~~~~----~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~ 214 (337)
T 2z0m_A 144 MGFIDDIKIILAQT----SNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRS--KVQA 214 (337)
T ss_dssp TTCHHHHHHHHHHC----TTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHH--HHHH
T ss_pred cccHHHHHHHHhhC----CcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHH--HHHH
Confidence 99999999999888 6678999999999999999999999888766432 3445666666666554432 2233
Q ss_pred HHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 392 LHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 392 l~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+... ...++||||+++++|+.+++.|. .+..+||++++.+|.+++
T Consensus 215 ~~~~-------~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~ 259 (337)
T 2z0m_A 215 LREN-------KDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNI 259 (337)
T ss_dssp HHTC-------CCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHH
T ss_pred HHhC-------CCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHH
Confidence 4332 26789999999999999999886 689999999999999875
No 23
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=4.9e-38 Score=295.35 Aligned_cols=211 Identities=32% Similarity=0.527 Sum_probs=187.7
Q ss_pred cCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCC
Q 013189 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRT 221 (448)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 221 (448)
.+..+|++++|++.+.+++..++|..|+++|.++++.++.++|+++++|||+|||++|++|+++.+..... ...
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~------~~~ 95 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW------TST 95 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC------CGG
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc------ccc
Confidence 45678999999999999999999999999999999999999999999999999999999999998875421 112
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcc-cccCCCeeE
Q 013189 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMIRY 300 (448)
Q Consensus 222 ~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~-~~~l~~v~~ 300 (448)
.++++||++||++|+.|+++.++++....++++..++|+.....+...+ .+++|+|+||++|.+++... .+.+.++++
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~ 174 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQM 174 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccE
Confidence 3567999999999999999999999888889999999998877766665 46899999999999998765 467899999
Q ss_pred EEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEec
Q 013189 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG 363 (448)
Q Consensus 301 lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~ 363 (448)
|||||||++++++|...+..++..+ +..+|+++||||+++.+.++++.++.+|..+.+.
T Consensus 175 lViDEah~~~~~~~~~~~~~i~~~~----~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 175 LVLDEADRILDMGFADTMNAVIENL----PKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp EEETTHHHHHHTTTHHHHHHHHHTS----CTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred EEEeChHHHhcCCcHHHHHHHHHhC----CCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 9999999999999999999999998 6678999999999999999999999999988764
No 24
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=8e-39 Score=297.40 Aligned_cols=206 Identities=32% Similarity=0.504 Sum_probs=185.6
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCC
Q 013189 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 144 ~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
..+|++++|++.+.+++.++||.+|+++|.++++.+++++|+++++|||+|||++|++|+++.+... ..+
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~----------~~~ 72 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE----------RAE 72 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT----------SCS
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC----------cCC
Confidence 4679999999999999999999999999999999999999999999999999999999999877532 234
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccC----CcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQT----GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~----~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
+++||++||++|+.|+++.++++.... ++++..++||.....+...+..+++|+|+||++|.+++....+.+.+++
T Consensus 73 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 152 (219)
T 1q0u_A 73 VQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAH 152 (219)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCC
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcce
Confidence 679999999999999999999987655 6888899999876666555556789999999999999988878889999
Q ss_pred EEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEec
Q 013189 300 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG 363 (448)
Q Consensus 300 ~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~ 363 (448)
+|||||||++++++|...+..++..+ +..+|+++||||++.++.++++.++.+|..+.+.
T Consensus 153 ~lViDEah~~~~~~~~~~l~~i~~~~----~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 153 ILVVDEADLMLDMGFITDVDQIAARM----PKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp EEEECSHHHHHHTTCHHHHHHHHHTS----CTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred EEEEcCchHHhhhChHHHHHHHHHhC----CcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 99999999999999999999999988 6678999999999999999999999999888664
No 25
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=5.6e-38 Score=292.38 Aligned_cols=211 Identities=33% Similarity=0.533 Sum_probs=181.4
Q ss_pred CCcCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCC
Q 013189 140 VPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGS 219 (448)
Q Consensus 140 ~~~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~ 219 (448)
.++++.+|++++|++.+++.+..+||.+|+|+|.++++.+++++|+++++|||+|||++|++|+++.+...
T Consensus 9 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~--------- 79 (224)
T 1qde_A 9 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--------- 79 (224)
T ss_dssp CCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT---------
T ss_pred cCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc---------
Confidence 44567889999999999999999999999999999999999999999999999999999999999877432
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCee
Q 013189 220 RTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 220 ~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
..++++||++||++|+.|+++.++++....++++..++|+.....+...+.. ++|+|+||++|.+++.+....+.+++
T Consensus 80 -~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~ 157 (224)
T 1qde_A 80 -VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIK 157 (224)
T ss_dssp -CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCC
T ss_pred -CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCc
Confidence 2346799999999999999999999988888999999999887766665554 89999999999999988888899999
Q ss_pred EEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccc
Q 013189 300 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRV 365 (448)
Q Consensus 300 ~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~ 365 (448)
+|||||||++++++|...+..++..+ +...|+++||||++.++.++++.++.+++.+.+...
T Consensus 158 ~iViDEah~~~~~~~~~~l~~i~~~~----~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 158 MFILDEADEMLSSGFKEQIYQIFTLL----PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHHS----CTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred EEEEcChhHHhhhhhHHHHHHHHHhC----CccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999999988 667899999999999999999999999998876543
No 26
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=7e-38 Score=299.40 Aligned_cols=203 Identities=35% Similarity=0.530 Sum_probs=181.4
Q ss_pred CCcccCC--CCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCC
Q 013189 145 NTFAEID--LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (448)
Q Consensus 145 ~~f~~~~--l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 222 (448)
.+|++++ |++.+++++..+||.+|+|+|.++|+.++.++|+++++|||||||++|++|+++.+...... ...
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~------~~~ 125 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM------PRN 125 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC------GGG
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc------ccC
Confidence 4577776 99999999999999999999999999999999999999999999999999999988764311 123
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhccc-ccCCCeeEE
Q 013189 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR-VSLQMIRYL 301 (448)
Q Consensus 223 ~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~-~~l~~v~~l 301 (448)
++++|||+||++||.|+++.++++....++.+..++|+.....+...+..+++|+|+||++|.+++.... +.+.++++|
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~l 205 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCL 205 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEE
Confidence 5679999999999999999999999888899999999999998888888899999999999999987753 678999999
Q ss_pred EEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCc
Q 013189 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANY 357 (448)
Q Consensus 302 VlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~ 357 (448)
||||||+|++++|.+.+..|+..+ +..+|+++||||++++++.+++.++.++
T Consensus 206 ViDEah~l~~~~~~~~l~~i~~~~----~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 206 VIDEADRILDVGFEEELKQIIKLL----PTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHHS----CSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred EEcChHHHhhhhHHHHHHHHHHhC----CCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 999999999999999999999999 6778999999999999999999998754
No 27
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=301.00 Aligned_cols=222 Identities=34% Similarity=0.547 Sum_probs=188.8
Q ss_pred ccccCCCCCCcCCCCcccC----CCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHH
Q 013189 132 PVETSGENVPPAVNTFAEI----DLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 132 ~v~~~~~~~~~~~~~f~~~----~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l 207 (448)
.+...+...|.++.+|+++ +|++.+++++.++||.+|+|+|.++|+.++.++|+++++|||+|||++|++|++..+
T Consensus 12 ~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l 91 (245)
T 3dkp_A 12 KIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQL 91 (245)
T ss_dssp TEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 3445677788899999988 899999999999999999999999999999999999999999999999999999887
Q ss_pred hhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHH-HHHhcCCcEEEeChhHHHH
Q 013189 208 MREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL-RELERGVDILVATPGRLVD 286 (448)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~-~~l~~~~~Ilv~TP~~L~~ 286 (448)
... ...++++|||+||++|+.|+++.++++....++++..++++....... .....+++|+|+||++|.+
T Consensus 92 ~~~---------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~ 162 (245)
T 3dkp_A 92 KQP---------ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIY 162 (245)
T ss_dssp CSC---------CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHH
T ss_pred hhc---------ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHH
Confidence 532 134567999999999999999999999888888888877664322221 1223468999999999999
Q ss_pred HHhcc--cccCCCeeEEEEecCCccCc---CCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEE
Q 013189 287 LLERA--RVSLQMIRYLALDEADRMLD---MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLA 361 (448)
Q Consensus 287 ~l~~~--~~~l~~v~~lVlDEah~ll~---~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~ 361 (448)
++... .+.+.++++|||||||++++ .+|...+..++..+. +...|+++||||++++++++++.++.+|+.+.
T Consensus 163 ~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~ 239 (245)
T 3dkp_A 163 LLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACT---SHKVRRAMFSATFAYDVEQWCKLNLDNVISVS 239 (245)
T ss_dssp HHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCC---CTTCEEEEEESSCCHHHHHHHHHHSSSCEEEE
T ss_pred HHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcC---CCCcEEEEEeccCCHHHHHHHHHhCCCCEEEE
Confidence 99876 46789999999999999998 578899999987763 44689999999999999999999999999998
Q ss_pred eccc
Q 013189 362 VGRV 365 (448)
Q Consensus 362 v~~~ 365 (448)
++..
T Consensus 240 ~~~~ 243 (245)
T 3dkp_A 240 IGAR 243 (245)
T ss_dssp ECC-
T ss_pred eCCC
Confidence 8654
No 28
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.8e-37 Score=285.06 Aligned_cols=205 Identities=39% Similarity=0.628 Sum_probs=186.4
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCce
Q 013189 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPL 225 (448)
Q Consensus 146 ~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~ 225 (448)
+|++++|++.+.+++.+++|.+|+|+|+++++.+++++|+++++|||+|||++|++|++..+.... ....+++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~-------~~~~~~~ 74 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ-------ERGRKPR 74 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC-------CTTCCCS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-------ccCCCCc
Confidence 589999999999999999999999999999999999999999999999999999999998875421 1234578
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEec
Q 013189 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDE 305 (448)
Q Consensus 226 ~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDE 305 (448)
+||++||++|+.|+++.++++... +++..++|+.....+...+..+++|+|+||++|.+++....+.+.++++||+||
T Consensus 75 ~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 75 ALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDE 152 (207)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEES
T ss_pred EEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEC
Confidence 999999999999999999998754 778889999998888888888999999999999999988888899999999999
Q ss_pred CCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEec
Q 013189 306 ADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG 363 (448)
Q Consensus 306 ah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~ 363 (448)
||++++++|...+..++..+ +..+|+++||||+++++.++++.++.+|+.+.+.
T Consensus 153 ah~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 153 ADEMLSMGFEEEVEALLSAT----PPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----CTTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred hhHhhccchHHHHHHHHHhC----CccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 99999999999999999887 6678999999999999999999999999887653
No 29
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.1e-37 Score=286.68 Aligned_cols=209 Identities=32% Similarity=0.500 Sum_probs=183.2
Q ss_pred CCCcCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCC
Q 013189 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 218 (448)
Q Consensus 139 ~~~~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~ 218 (448)
..+....+|++++|++.+.+++..+||.+|+|+|.++++.+++++|+++++|||+|||++|++|++..+...
T Consensus 8 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-------- 79 (220)
T 1t6n_A 8 YVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-------- 79 (220)
T ss_dssp ------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC--------
T ss_pred cccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc--------
Confidence 344455679999999999999999999999999999999999999999999999999999999999876321
Q ss_pred CCCCCceEEEEcCcHHHHHHHHHHHHHhcccC-CcEEEEEECCCCHHHHHHHHhc-CCcEEEeChhHHHHHHhcccccCC
Q 013189 219 SRTVYPLALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQ 296 (448)
Q Consensus 219 ~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~TP~~L~~~l~~~~~~l~ 296 (448)
...+++||++||++|+.|+++.++++.... ++++..++|+.....+...+.. .++|+|+||++|.+++....+.+.
T Consensus 80 --~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~ 157 (220)
T 1t6n_A 80 --TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLK 157 (220)
T ss_dssp --TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred --CCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcc
Confidence 224579999999999999999999998665 7899999999998888777765 479999999999999988888899
Q ss_pred CeeEEEEecCCccCc-CCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEE
Q 013189 297 MIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLA 361 (448)
Q Consensus 297 ~v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~ 361 (448)
++++||+||||++++ .+|...+..++..+ +..+|+++||||++.+++++++.++.+|+.+.
T Consensus 158 ~~~~lViDEah~~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 158 HIKHFILDECDKMLEQLDMRRDVQEIFRMT----PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp TCCEEEEESHHHHHSSHHHHHHHHHHHHTS----CSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cCCEEEEcCHHHHhcccCcHHHHHHHHHhC----CCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999999999999987 47888898888877 66789999999999999999999999998775
No 30
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.9e-36 Score=320.20 Aligned_cols=269 Identities=15% Similarity=0.222 Sum_probs=209.5
Q ss_pred cccCCCCHHHHHHHHH-CCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCce
Q 013189 147 FAEIDLGEALNLNIRR-CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPL 225 (448)
Q Consensus 147 f~~~~l~~~l~~~l~~-~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~ 225 (448)
+.++++++.+.+.|++ +||.+|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. .++
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~----------------~g~ 86 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS----------------DGF 86 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS----------------SSE
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc----------------CCc
Confidence 4467899999999998 69999999999999999999999999999999999999999841 247
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHH------hcCCcEEEeChhHHH------HHHhcccc
Q 013189 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL------ERGVDILVATPGRLV------DLLERARV 293 (448)
Q Consensus 226 ~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l------~~~~~Ilv~TP~~L~------~~l~~~~~ 293 (448)
+|||+|+++|+.|+++.++++ ++++..++++.....+...+ ...++|+|+||++|. +.+. ...
T Consensus 87 ~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~-~~~ 161 (591)
T 2v1x_A 87 TLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE-KAY 161 (591)
T ss_dssp EEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH-HHH
T ss_pred EEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH-hhh
Confidence 999999999999999999997 67888888988876554332 346899999999884 2333 234
Q ss_pred cCCCeeEEEEecCCccCcCC--CHHHHHH--HHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcc
Q 013189 294 SLQMIRYLALDEADRMLDMG--FEPQIRK--IVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSST 369 (448)
Q Consensus 294 ~l~~v~~lVlDEah~ll~~g--f~~~i~~--i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~ 369 (448)
.+..+++|||||||++++|| |++.+.. ++... .+..|+|+||||+++.+...+..++..+..+.+. .....
T Consensus 162 ~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~----~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~-~~~~r 236 (591)
T 2v1x_A 162 EARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ----FPNASLIGLTATATNHVLTDAQKILCIEKCFTFT-ASFNR 236 (591)
T ss_dssp HTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH----CTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEE-CCCCC
T ss_pred hccCCcEEEEECcccccccccccHHHHHHHHHHHHh----CCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEe-cCCCC
Confidence 67899999999999999998 8888765 33333 3358899999999999988888877643222221 12233
Q ss_pred cceeEEEEEecc--cchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 370 DLIVQRVEFVHE--SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 370 ~~i~q~~~~~~~--~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.++...+..... .++...|.+++.... .+.++||||+|++.|+.+++.|...|+.+..|||+|++.+|.+++
T Consensus 237 ~nl~~~v~~~~~~~~~~~~~l~~~l~~~~------~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~ 310 (591)
T 2v1x_A 237 PNLYYEVRQKPSNTEDFIEDIVKLINGRY------KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVH 310 (591)
T ss_dssp TTEEEEEEECCSSHHHHHHHHHHHHTTTT------TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred cccEEEEEeCCCcHHHHHHHHHHHHHHhc------cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHH
Confidence 444433333221 223344555544321 267899999999999999999999999999999999999999875
No 31
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.5e-38 Score=326.61 Aligned_cols=282 Identities=24% Similarity=0.356 Sum_probs=204.7
Q ss_pred CcCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcC--CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCC
Q 013189 141 PPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 218 (448)
Q Consensus 141 ~~~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~ 218 (448)
|.....|...++++.+.+.+...+|.+|+++|.++|+.++.+ ++++++++||||||++|++|++..+...
T Consensus 115 p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~-------- 186 (508)
T 3fho_A 115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS-------- 186 (508)
T ss_dssp ------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT--------
T ss_pred ccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC--------
Confidence 334445667789999999999999999999999999999987 9999999999999999999999877443
Q ss_pred CCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCe
Q 013189 219 SRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 219 ~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v 298 (448)
..++++|||+|+++|+.|+++.++++.....+.+...+++..... ....++|+|+||++|.+++....+.+.++
T Consensus 187 --~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~ 260 (508)
T 3fho_A 187 --VPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDI 260 (508)
T ss_dssp --CCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred --CCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCC
Confidence 234579999999999999999999998777777766666544322 23368999999999999998888889999
Q ss_pred eEEEEecCCccCc-CCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEE
Q 013189 299 RYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVE 377 (448)
Q Consensus 299 ~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~ 377 (448)
++|||||||++.+ .+|...+..++..+ +...|+|++|||++..+..+...++.++..+.+.........+.+.+.
T Consensus 261 ~lIIiDEaH~~~~~~~~~~~~~~i~~~~----~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 336 (508)
T 3fho_A 261 KVFVLDEADNMLDQQGLGDQSMRIKHLL----PRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYM 336 (508)
T ss_dssp CEEEECCHHHHTTC--CHHHHHHHHHHS----CTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEE
T ss_pred CEEEEechhhhcccCCcHHHHHHHHHhC----CcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEE
Confidence 9999999999988 68999999999988 667899999999999999999999999888877666666666777666
Q ss_pred Eec-ccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 378 FVH-ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 378 ~~~-~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+. ...|...+.+++.... .+++||||+++++|+.+++.|...++.+..+||++++.+|++++
T Consensus 337 ~~~~~~~k~~~l~~ll~~~~-------~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il 400 (508)
T 3fho_A 337 DCQSEEHKYNVLVELYGLLT-------IGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIM 400 (508)
T ss_dssp EC--CHHHHHHHHHHHC----------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGT
T ss_pred ECCchHHHHHHHHHHHHhcC-------CCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Confidence 663 4456666666665543 67899999999999999999999999999999999999998765
No 32
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.4e-36 Score=308.88 Aligned_cols=251 Identities=22% Similarity=0.204 Sum_probs=201.4
Q ss_pred HHHHHHHH-CCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcH
Q 013189 155 ALNLNIRR-CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR 233 (448)
Q Consensus 155 ~l~~~l~~-~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 233 (448)
++.+.+++ ++| +|+|+|.++|+.++.++|+++++|||||||++|++|++..+. .++++|||+||+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~-------------~~~~~lil~Pt~ 74 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-------------KGKKSALVFPTV 74 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT-------------TTCCEEEEESSH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc-------------CCCEEEEEECCH
Confidence 34455554 355 899999999999999999999999999999999999887551 235799999999
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEECCCCH---HHHHHHHhcC-CcEEEeChhHHHHHHhcccccCCCeeEEEEecCCcc
Q 013189 234 ELSSQIHVEAKKFSYQTGVKVVVAYGGAPI---NQQLRELERG-VDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (448)
Q Consensus 234 eLa~qi~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~l 309 (448)
+|+.|+++.+++++. .++++..++|+... ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++
T Consensus 75 ~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~ 151 (414)
T 3oiy_A 75 TLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAV 151 (414)
T ss_dssp HHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHH
T ss_pred HHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhh
Confidence 999999999999987 78999999999998 5666777776 99999999999988874 66789999999999765
Q ss_pred C----------c-CCCHHH-HHHHHHHcC-------CCCCCCceEEEEecc-CChHHH-HHHHHhhcCcEEEEeccccCc
Q 013189 310 L----------D-MGFEPQ-IRKIVQQMD-------MPPPGMRQTMLFSAT-FPKEIQ-RLASDFLANYIFLAVGRVGSS 368 (448)
Q Consensus 310 l----------~-~gf~~~-i~~i~~~l~-------~~~~~~~q~i~~SAT-~~~~v~-~l~~~~l~~~~~i~v~~~~~~ 368 (448)
+ + ++|.++ +..++..+. ......+|+++|||| +|..+. .+...++. +.+......
T Consensus 152 ~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~ 227 (414)
T 3oiy_A 152 LKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSV 227 (414)
T ss_dssp HHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCC
T ss_pred hhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccc
Confidence 4 4 788888 888888772 111267899999999 676655 33333332 333344455
Q ss_pred ccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeE-EecCC
Q 013189 369 TDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPAT-TIHGD 437 (448)
Q Consensus 369 ~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~-~iHg~ 437 (448)
..++.+.+..+ +|...|.+++... +.++||||++++.|+.+++.|...|+++. .+||+
T Consensus 228 ~~~i~~~~~~~---~~~~~l~~~l~~~--------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~ 286 (414)
T 3oiy_A 228 ARNITHVRISS---RSKEKLVELLEIF--------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF 286 (414)
T ss_dssp CCSEEEEEESS---CCHHHHHHHHHHH--------CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH
T ss_pred cccchheeecc---CHHHHHHHHHHHc--------CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc
Confidence 66777766554 5677788888773 57799999999999999999999999998 99996
No 33
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=5.4e-36 Score=313.21 Aligned_cols=269 Identities=17% Similarity=0.193 Sum_probs=212.0
Q ss_pred CCcccCCCCHHHHHHHHH-CCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCC
Q 013189 145 NTFAEIDLGEALNLNIRR-CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~-~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
..|++++|++.+.+.|++ +||..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. .
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~----------------~ 65 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL----------------N 65 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS----------------S
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh----------------C
Confidence 468999999999999998 89999999999999999999999999999999999999999842 1
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHH---H-hcCCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE---L-ERGVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l-~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
+.+|||+|+++|+.|+.+.++++ ++.+..++++.....+... + ...++|+|+||++|........+...+++
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~ 141 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPV 141 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEE
T ss_pred CCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCC
Confidence 46999999999999999999985 6788888888776554322 2 33589999999999643222334468899
Q ss_pred EEEEecCCccCcCC--CHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhh--cCcEEEEeccccCcccceeEE
Q 013189 300 YLALDEADRMLDMG--FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL--ANYIFLAVGRVGSSTDLIVQR 375 (448)
Q Consensus 300 ~lVlDEah~ll~~g--f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l--~~~~~i~v~~~~~~~~~i~q~ 375 (448)
+|||||||++++|| |++.+..+...+... +..++++||||++..+...+...+ .++..+ +. .....++ .
T Consensus 142 ~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~--~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~--~~~r~~l--~ 214 (523)
T 1oyw_A 142 LLAVDEAHCISQWGHDFRPEYAALGQLRQRF--PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-IS--SFDRPNI--R 214 (523)
T ss_dssp EEEESSGGGGCTTSSCCCHHHHGGGGHHHHC--TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-EC--CCCCTTE--E
T ss_pred EEEEeCccccCcCCCccHHHHHHHHHHHHhC--CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eC--CCCCCce--E
Confidence 99999999999998 877776653322211 247899999999998776554444 344333 22 1223333 3
Q ss_pred EEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 376 VEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 376 ~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+.......+...+.+++.... +.++||||+|++.|+.+++.|...|+.+..+||+|++++|++++
T Consensus 215 ~~v~~~~~~~~~l~~~l~~~~-------~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~ 279 (523)
T 1oyw_A 215 YMLMEKFKPLDQLMRYVQEQR-------GKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQ 279 (523)
T ss_dssp EEEEECSSHHHHHHHHHHHTT-------TCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHhcC-------CCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHH
Confidence 444455667778888887642 66899999999999999999999999999999999999999875
No 34
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.5e-35 Score=312.94 Aligned_cols=262 Identities=16% Similarity=0.180 Sum_probs=199.5
Q ss_pred HCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013189 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~ 241 (448)
.+|| +|+|+|..++|.++.|+ ++.++||+|||++|++|++...+. ++.++||+||++||.|+++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~-------------g~~vlVltptreLA~qd~e 142 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT-------------GKGVHVVTVNEYLASRDAE 142 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT-------------SSCEEEEESSHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc-------------CCCEEEEeCCHHHHHHHHH
Confidence 5799 99999999999999998 999999999999999999854332 2459999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHH-HHHHhcc------cccCCCeeEEEEecCCccC-cCC
Q 013189 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML-DMG 313 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L-~~~l~~~------~~~l~~v~~lVlDEah~ll-~~g 313 (448)
.+..+....++++.+++||.+... +.+..+|||+|+||++| .++|..+ .+.+..+.++||||||.|| +++
T Consensus 143 ~~~~l~~~lgl~v~~i~gg~~~~~--r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea 220 (844)
T 1tf5_A 143 QMGKIFEFLGLTVGLNLNSMSKDE--KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEA 220 (844)
T ss_dssp HHHHHHHHTTCCEEECCTTSCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTT
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhcc
Confidence 999999999999999999998644 44445799999999999 6776543 3567999999999999998 764
Q ss_pred ---------------CHHHHHHHHHHcCC-----CCCCCceEE-----------------EEeccCCh---HHHHHH--H
Q 013189 314 ---------------FEPQIRKIVQQMDM-----PPPGMRQTM-----------------LFSATFPK---EIQRLA--S 351 (448)
Q Consensus 314 ---------------f~~~i~~i~~~l~~-----~~~~~~q~i-----------------~~SAT~~~---~v~~l~--~ 351 (448)
|..++..|+..+.. ..++.+|++ +||||++. .+...+ .
T Consensus 221 ~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~ 300 (844)
T 1tf5_A 221 RTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAH 300 (844)
T ss_dssp TCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHH
T ss_pred ccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHH
Confidence 66888999988831 012568888 99999874 444332 2
Q ss_pred Hhhc---CcEE-----EEec-----------------------------cccCccccee---------------------
Q 013189 352 DFLA---NYIF-----LAVG-----------------------------RVGSSTDLIV--------------------- 373 (448)
Q Consensus 352 ~~l~---~~~~-----i~v~-----------------------------~~~~~~~~i~--------------------- 373 (448)
.++. +|+. +.++ ....+...|+
T Consensus 301 ~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te 380 (844)
T 1tf5_A 301 VAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTE 380 (844)
T ss_dssp HTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchh
Confidence 2232 2221 0010 0000001111
Q ss_pred --------------------------EEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC
Q 013189 374 --------------------------QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN 427 (448)
Q Consensus 374 --------------------------q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~ 427 (448)
+.+.++...+|...|.+++...... +.++||||+|++.++.|+..|...
T Consensus 381 ~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~-----~~pvLVft~s~~~se~Ls~~L~~~ 455 (844)
T 1tf5_A 381 EEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMT-----GQPVLVGTVAVETSELISKLLKNK 455 (844)
T ss_dssp HHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHH-----TCCEEEEESCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhc-----CCcEEEEECCHHHHHHHHHHHHHC
Confidence 1244556678888888888753211 668999999999999999999999
Q ss_pred CCCeEEecCCCCHHHHHHH
Q 013189 428 GFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 428 g~~~~~iHg~~~q~eR~~~ 446 (448)
|+++.+|||++.+.||..+
T Consensus 456 gi~~~vLhg~~~~rEr~ii 474 (844)
T 1tf5_A 456 GIPHQVLNAKNHEREAQII 474 (844)
T ss_dssp TCCCEEECSSCHHHHHHHH
T ss_pred CCCEEEeeCCccHHHHHHH
Confidence 9999999999988888644
No 35
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-34 Score=323.54 Aligned_cols=269 Identities=18% Similarity=0.176 Sum_probs=207.9
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013189 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
..|..+++++.+...+....+..|+|+|+++|+.+..++|++++|+||||||++|++|++..+.. +.
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-------------g~ 228 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-------------KQ 228 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT-------------TC
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc-------------CC
Confidence 35677777777777777777778999999999999999999999999999999999999987732 34
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEe
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 304 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlD 304 (448)
++||++||++|+.|+++.++++.. .+.+++|+.... ..++|+|+||++|.+++.+....+.++++||||
T Consensus 229 rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVID 297 (1108)
T 3l9o_A 229 RVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFD 297 (1108)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEh
Confidence 799999999999999999999764 567788887633 458999999999999998887778999999999
Q ss_pred cCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChH--HHHHHHHhhcCcEEEEeccccCcccceeEEEEE----
Q 013189 305 EADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE--IQRLASDFLANYIFLAVGRVGSSTDLIVQRVEF---- 378 (448)
Q Consensus 305 Eah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~--v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~---- 378 (448)
|||+|++++|...+..++..+ +...|+|+||||++.. +..++..++.++..+...... ...+.+++..
T Consensus 298 EaH~l~d~~rg~~~e~ii~~l----~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~ 371 (1108)
T 3l9o_A 298 EVHYMRDKERGVVWEETIILL----PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGD 371 (1108)
T ss_dssp TGGGTTSHHHHHHHHHHHHHS----CTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC--SSCEEEEEEETTSS
T ss_pred hhhhccccchHHHHHHHHHhc----CCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEeecCCc
Confidence 999999999999999999998 6789999999999764 456666666666655443221 1112222211
Q ss_pred -----ecccc----------------------------------------h---HHHHHHHHHHHHhcCCCCCCccEEEE
Q 013189 379 -----VHESD----------------------------------------K---RSHLMDLLHAQVANGVHGKQALTLVF 410 (448)
Q Consensus 379 -----~~~~~----------------------------------------k---~~~L~~ll~~~~~~~~~~~~~~~IIF 410 (448)
++... + ...+..++...... ...++|||
T Consensus 372 ~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~----~~~~vIVF 447 (1108)
T 3l9o_A 372 GIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK----KYNPVIVF 447 (1108)
T ss_dssp CCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT----TCCCEEEE
T ss_pred ceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc----CCCCEEEE
Confidence 10000 0 23333444433221 25689999
Q ss_pred eCchHHHHHHHHHHHHCCCC---------------------------------------eEEecCCCCHHHHHHHh
Q 013189 411 VETKKGADALEHWLYMNGFP---------------------------------------ATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 411 ~~t~~~a~~l~~~L~~~g~~---------------------------------------~~~iHg~~~q~eR~~~l 447 (448)
|++++.|+.++..|...++. +..+||+|++.+|+.++
T Consensus 448 ~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~ 523 (1108)
T 3l9o_A 448 SFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIE 523 (1108)
T ss_dssp ESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHH
T ss_pred eCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHH
Confidence 99999999999998653332 78999999999999875
No 36
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=9.3e-34 Score=307.68 Aligned_cols=267 Identities=18% Similarity=0.214 Sum_probs=207.3
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhh-HhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013189 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPI-SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 146 ~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
+|++++|++.+.+.+...||.+|+|+|.++++. +..++++++++|||||||++|.+|++..+... +.
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------~~ 69 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ------------GG 69 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH------------CS
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC------------CC
Confidence 589999999999999999999999999999998 78999999999999999999999999887643 24
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEe
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 304 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlD 304 (448)
++||++|+++||.|+++.++++.. .++++..++|+...... ....++|+|+||++|..++.+....++++++||||
T Consensus 70 ~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 145 (720)
T 2zj8_A 70 KAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVAD 145 (720)
T ss_dssp EEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEE
T ss_pred EEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEE
Confidence 699999999999999999987654 47899999997664332 12358999999999999998776668999999999
Q ss_pred cCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEE------EEE
Q 013189 305 EADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQR------VEF 378 (448)
Q Consensus 305 Eah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~------~~~ 378 (448)
|||++.++++...+..++..+. ...|+|+||||+++ ...++. ++....+ .. ......+... +.+
T Consensus 146 E~H~l~~~~r~~~~~~ll~~l~----~~~~ii~lSATl~n-~~~~~~-~l~~~~~-~~---~~rp~~l~~~~~~~~~~~~ 215 (720)
T 2zj8_A 146 EIHLIGSRDRGATLEVILAHML----GKAQIIGLSATIGN-PEELAE-WLNAELI-VS---DWRPVKLRRGVFYQGFVTW 215 (720)
T ss_dssp TGGGGGCTTTHHHHHHHHHHHB----TTBEEEEEECCCSC-HHHHHH-HTTEEEE-EC---CCCSSEEEEEEEETTEEEE
T ss_pred CCcccCCCcccHHHHHHHHHhh----cCCeEEEEcCCcCC-HHHHHH-HhCCccc-CC---CCCCCcceEEEEeCCeeec
Confidence 9999999899999999999994 37899999999975 344444 3332211 11 0001111111 111
Q ss_pred ec-----ccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC------------------C-------
Q 013189 379 VH-----ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN------------------G------- 428 (448)
Q Consensus 379 ~~-----~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~------------------g------- 428 (448)
.. ...+...+.+++.. ++++||||++++.|+.++..|... +
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~---------~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 286 (720)
T 2zj8_A 216 EDGSIDRFSSWEELVYDAIRK---------KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTN 286 (720)
T ss_dssp TTSCEEECSSTTHHHHHHHHT---------TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHH
T ss_pred cccchhhhhHHHHHHHHHHhC---------CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccch
Confidence 11 12333444444321 578999999999999999998753 1
Q ss_pred --------CCeEEecCCCCHHHHHHHh
Q 013189 429 --------FPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 429 --------~~~~~iHg~~~q~eR~~~l 447 (448)
..+..+||+|++++|+.++
T Consensus 287 ~~l~~~~~~~v~~~h~~l~~~~R~~v~ 313 (720)
T 2zj8_A 287 EKLAKAIRGGVAFHHAGLGRDERVLVE 313 (720)
T ss_dssp HHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred HHHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 2489999999999998764
No 37
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=9.2e-34 Score=317.73 Aligned_cols=244 Identities=22% Similarity=0.214 Sum_probs=201.3
Q ss_pred HCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013189 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~ 241 (448)
.++| +|||+|.++||.++.|+|++++|+||||||++|+++++..+. .++++|||+||++||.|+++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~-------------~~~~~Lil~PtreLa~Q~~~ 139 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-------------KGKKSALVFPTVTLVKQTLE 139 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT-------------TTCCEEEEESSHHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh-------------cCCeEEEEechHHHHHHHHH
Confidence 4677 699999999999999999999999999999999888887651 23579999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCCH---HHHHHHHhcC-CcEEEeChhHHHHHHhcccccCCCeeEEEEecCCc---------
Q 013189 242 EAKKFSYQTGVKVVVAYGGAPI---NQQLRELERG-VDILVATPGRLVDLLERARVSLQMIRYLALDEADR--------- 308 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~--------- 308 (448)
.+++|+ ..++++..++||.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||+
T Consensus 140 ~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~D 216 (1104)
T 4ddu_A 140 RLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNID 216 (1104)
T ss_dssp HHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHH
T ss_pred HHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccch
Confidence 999988 778999999999988 6677778776 99999999999998874 6688999999999965
Q ss_pred -cCc-CCCHHH-HHHHHHHcC-------CCCCCCceEEEEecc-CChHHHH-HHHHhhcCcEEEEeccccCcccceeEEE
Q 013189 309 -MLD-MGFEPQ-IRKIVQQMD-------MPPPGMRQTMLFSAT-FPKEIQR-LASDFLANYIFLAVGRVGSSTDLIVQRV 376 (448)
Q Consensus 309 -ll~-~gf~~~-i~~i~~~l~-------~~~~~~~q~i~~SAT-~~~~v~~-l~~~~l~~~~~i~v~~~~~~~~~i~q~~ 376 (448)
|++ +||.++ +..++..+. ......+|+++|||| .|..+.. +...++ .+.+........++.+.+
T Consensus 217 r~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l----~i~v~~~~~~~~~i~~~~ 292 (1104)
T 4ddu_A 217 TLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLL----NFTVGRLVSVARNITHVR 292 (1104)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHT----CCCCCBCCCCCCCEEEEE
T ss_pred hhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcce----eEEeccCCCCcCCceeEE
Confidence 445 899888 899998872 111167899999999 6766553 333332 244455556677788877
Q ss_pred EEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeE-EecCC
Q 013189 377 EFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPAT-TIHGD 437 (448)
Q Consensus 377 ~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~-~iHg~ 437 (448)
..+ +|...|.+++... +.++||||++++.|+.|+..|...|+++. .+||+
T Consensus 293 ~~~---~k~~~L~~ll~~~--------~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~ 343 (1104)
T 4ddu_A 293 ISS---RSKEKLVELLEIF--------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF 343 (1104)
T ss_dssp ESC---CCHHHHHHHHHHH--------CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH
T ss_pred Eec---CHHHHHHHHHHhc--------CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc
Confidence 655 5677788888773 57899999999999999999999999998 99994
No 38
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.8e-33 Score=301.92 Aligned_cols=271 Identities=20% Similarity=0.244 Sum_probs=205.6
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhh-HhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCC
Q 013189 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPI-SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
.+|++++|++.+.+.+...||.+|+|+|.++++. +..++++++++|||||||++|.+++++.+... +
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------~ 75 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN------------G 75 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------------C
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC------------C
Confidence 4699999999999999999999999999999998 77899999999999999999999999887532 2
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEE
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVl 303 (448)
.++||++|+++||.|+++.++++.. .++++..++|+...... .+ ..++|+|+||++|..++.+....++++++|||
T Consensus 76 ~~il~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIi 151 (715)
T 2va8_A 76 GKAIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVL 151 (715)
T ss_dssp SEEEEECSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEE
Confidence 5799999999999999999976643 47889888888765432 12 36899999999999999887666899999999
Q ss_pred ecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeE---------
Q 013189 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ--------- 374 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q--------- 374 (448)
||||++.++++...++.++..+. ..|+|+||||++. ...++. ++..+.+.... .+. .+..
T Consensus 152 DE~H~l~~~~~~~~l~~i~~~~~-----~~~ii~lSATl~n-~~~~~~-~l~~~~~~~~~---r~~-~l~~~~~~~~~~~ 220 (715)
T 2va8_A 152 DELHYLNDPERGPVVESVTIRAK-----RRNLLALSATISN-YKQIAK-WLGAEPVATNW---RPV-PLIEGVIYPERKK 220 (715)
T ss_dssp CSGGGGGCTTTHHHHHHHHHHHH-----TSEEEEEESCCTT-HHHHHH-HHTCEEEECCC---CSS-CEEEEEEEECSST
T ss_pred echhhcCCcccchHHHHHHHhcc-----cCcEEEEcCCCCC-HHHHHH-HhCCCccCCCC---CCC-CceEEEEecCCcc
Confidence 99999998889999999998883 6899999999975 344444 33322211100 000 1111
Q ss_pred ---EEEEeccc----chHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCC-------------------
Q 013189 375 ---RVEFVHES----DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG------------------- 428 (448)
Q Consensus 375 ---~~~~~~~~----~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g------------------- 428 (448)
.+.+.+.. .....+.+++..... .++++||||+++++|+.++..|....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 295 (715)
T 2va8_A 221 KEYNVIFKDNTTKKVHGDDAIIAYTLDSLS-----KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDD 295 (715)
T ss_dssp TEEEEEETTSCEEEEESSSHHHHHHHHHHT-----TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHT
T ss_pred cceeeecCcchhhhcccchHHHHHHHHHHh-----cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHH
Confidence 11111100 001122333332221 26789999999999999999998642
Q ss_pred -----------------CCeEEecCCCCHHHHHHHh
Q 013189 429 -----------------FPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 429 -----------------~~~~~iHg~~~q~eR~~~l 447 (448)
..+..+||+|++++|..++
T Consensus 296 i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 296 IEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp CCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred hhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 2489999999999998874
No 39
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5.7e-33 Score=291.88 Aligned_cols=172 Identities=20% Similarity=0.184 Sum_probs=135.1
Q ss_pred CCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013189 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~ 243 (448)
+..+|+|+|.++|+.++.++|+++++|||+|||++|++|+++.+.... ....+++|||+||++|+.|+++++
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~--------~~~~~~~lil~P~~~L~~q~~~~~ 75 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP--------AGRKAKVVFLATKVPVYEQQKNVF 75 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC--------SSCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc--------ccCCCeEEEEeCCHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999998876532 122467999999999999999999
Q ss_pred HHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccc-cCCCeeEEEEecCCccCcCCCHHHH-HHH
Q 013189 244 KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRMLDMGFEPQI-RKI 321 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~-~l~~v~~lVlDEah~ll~~gf~~~i-~~i 321 (448)
+++....++++..++|+.....+...+..+++|+|+||++|.+++....+ .+..+++|||||||++.++++...+ ..+
T Consensus 76 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~ 155 (556)
T 4a2p_A 76 KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRY 155 (556)
T ss_dssp HHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHH
T ss_pred HHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHH
Confidence 99988778999999999987777777777899999999999999988777 7999999999999999988743333 222
Q ss_pred HHHcCCCCCCCceEEEEeccCC
Q 013189 322 VQQMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 322 ~~~l~~~~~~~~q~i~~SAT~~ 343 (448)
+...........|+|+||||++
T Consensus 156 ~~~~~~~~~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 156 LEQKFNSASQLPQILGLTASVG 177 (556)
T ss_dssp HHHHHCC---CCEEEEEESCCC
T ss_pred HHhhhcccCCCCeEEEEeCCcc
Confidence 2221111234578999999984
No 40
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2e-33 Score=304.00 Aligned_cols=179 Identities=18% Similarity=0.206 Sum_probs=142.4
Q ss_pred HHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHH
Q 013189 157 NLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (448)
Q Consensus 157 ~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 236 (448)
.+++..+||.+|+|+|.++|+.++.++|+++++|||+|||++|++|+++.+..... ...+++|||+||++|+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~--------~~~~~~lvl~Pt~~L~ 74 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ--------GQKGKVVFFANQIPVY 74 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT--------TCCCCEEEECSSHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc--------CCCCeEEEEECCHHHH
Confidence 34567789999999999999999999999999999999999999999987765321 1235799999999999
Q ss_pred HHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccc-cCCCeeEEEEecCCccCcCC-C
Q 013189 237 SQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRMLDMG-F 314 (448)
Q Consensus 237 ~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~-~l~~v~~lVlDEah~ll~~g-f 314 (448)
.|+++++++++...++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++|||||||++.... +
T Consensus 75 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~ 154 (696)
T 2ykg_A 75 EQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY 154 (696)
T ss_dssp HHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHH
T ss_pred HHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccH
Confidence 999999999988778999999999877666666777899999999999999988766 78999999999999998654 2
Q ss_pred HHHHHHHHHH-cCCCCCCCceEEEEeccCC
Q 013189 315 EPQIRKIVQQ-MDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 315 ~~~i~~i~~~-l~~~~~~~~q~i~~SAT~~ 343 (448)
...+...+.. +........|+|+||||+.
T Consensus 155 ~~i~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 155 NMIMFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHHHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 2222222222 2222345678999999986
No 41
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.4e-33 Score=298.06 Aligned_cols=261 Identities=16% Similarity=0.168 Sum_probs=173.8
Q ss_pred CCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013189 163 CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 163 ~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~ 242 (448)
+|. .|+++|..++|.++.|+ ++.++||+|||++|++|++...+. ++.++||+||++||.|+++.
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~-------------g~~vlVltPTreLA~Q~~e~ 134 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT-------------GKGVHVVTVNDYLAQRDAEN 134 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT-------------SSCCEEEESSHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc-------------CCcEEEEcCCHHHHHHHHHH
Confidence 353 89999999999999998 999999999999999999865432 24599999999999999999
Q ss_pred HHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHH-HHHHhcc------cccCCCeeEEEEecCCccC-cCC-
Q 013189 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML-DMG- 313 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L-~~~l~~~------~~~l~~v~~lVlDEah~ll-~~g- 313 (448)
+..+....++++.+++||.+.. .+.+..++||+|+||++| .|+|..+ .+.+..+.++||||||+|| +++
T Consensus 135 ~~~l~~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~ 212 (853)
T 2fsf_A 135 NRPLFEFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEAR 212 (853)
T ss_dssp HHHHHHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTT
T ss_pred HHHHHHhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCc
Confidence 9999999999999999999864 445556799999999999 7888654 2567999999999999999 543
Q ss_pred --------------CHHHHHHHHHHcCCC----------------CCCCceEE------------------------EEe
Q 013189 314 --------------FEPQIRKIVQQMDMP----------------PPGMRQTM------------------------LFS 339 (448)
Q Consensus 314 --------------f~~~i~~i~~~l~~~----------------~~~~~q~i------------------------~~S 339 (448)
|..++..|+..+... .++.+|++ +||
T Consensus 213 tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfs 292 (853)
T 2fsf_A 213 TPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 292 (853)
T ss_dssp CEEEEEEC------------------------------------------------------------------------
T ss_pred ccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccC
Confidence 677888888888310 01256664 899
Q ss_pred ccCChH---HHHHH--HHhhc---Cc----------------------------------EEEEeccccCcccceeE---
Q 013189 340 ATFPKE---IQRLA--SDFLA---NY----------------------------------IFLAVGRVGSSTDLIVQ--- 374 (448)
Q Consensus 340 AT~~~~---v~~l~--~~~l~---~~----------------------------------~~i~v~~~~~~~~~i~q--- 374 (448)
||++.. +...+ ..++. +| ..+.+.....+...|++
T Consensus 293 at~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qny 372 (853)
T 2fsf_A 293 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNY 372 (853)
T ss_dssp ----------------------------------------------------------------CCCCCEEEEEEEHHHH
T ss_pred cccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHH
Confidence 998642 22211 11111 01 11222222222223331
Q ss_pred --------------------------------------------EEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEE
Q 013189 375 --------------------------------------------RVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVF 410 (448)
Q Consensus 375 --------------------------------------------~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF 410 (448)
.++++...+|...|.+++..... ++.++|||
T Consensus 373 fr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~-----~gqpvLVf 447 (853)
T 2fsf_A 373 FRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTA-----KGQPVLVG 447 (853)
T ss_dssp HTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHT-----TTCCEEEE
T ss_pred HhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhc-----CCCCEEEE
Confidence 23556777889999988865432 26789999
Q ss_pred eCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHH
Q 013189 411 VETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 411 ~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~ 446 (448)
|+|++.++.|+..|...|+++.++||++.+.||..+
T Consensus 448 t~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii 483 (853)
T 2fsf_A 448 TISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIV 483 (853)
T ss_dssp ESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHH
T ss_pred ECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHH
Confidence 999999999999999999999999999887777654
No 42
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.2e-33 Score=306.01 Aligned_cols=269 Identities=17% Similarity=0.189 Sum_probs=202.3
Q ss_pred CcccCC--CCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCC
Q 013189 146 TFAEID--LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 146 ~f~~~~--l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
+|++++ |++.+.+.+...||.+|+|+|.++++.+..++|+++++|||||||++|.+|++..+.. +
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-------------~ 68 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-------------G 68 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-------------T
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-------------C
Confidence 578888 9999999999999999999999999999999999999999999999999999987653 2
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEE
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVl 303 (448)
+++||++|+++||.|+++.++++.. .++++..++|+...... ....++|+|+||++|..++.+....++++++|||
T Consensus 69 ~~~l~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 69 GKSLYVVPLRALAGEKYESFKKWEK-IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEE
T ss_pred CcEEEEeCcHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEE
Confidence 4699999999999999999976643 47899998888654332 1126899999999999999887666899999999
Q ss_pred ecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEE------E
Q 013189 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRV------E 377 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~------~ 377 (448)
||||++.++++...+..++..+... ....|+|+||||++. ...++. ++..+.+.... . ...+...+ .
T Consensus 145 DE~H~l~~~~r~~~~~~ll~~l~~~-~~~~~ii~lSATl~n-~~~~~~-~l~~~~~~~~~---r-~~~l~~~~~~~~~~~ 217 (702)
T 2p6r_A 145 DEIHLLDSEKRGATLEILVTKMRRM-NKALRVIGLSATAPN-VTEIAE-WLDADYYVSDW---R-PVPLVEGVLCEGTLE 217 (702)
T ss_dssp TTGGGGGCTTTHHHHHHHHHHHHHH-CTTCEEEEEECCCTT-HHHHHH-HTTCEEEECCC---C-SSCEEEEEECSSEEE
T ss_pred eeeeecCCCCcccHHHHHHHHHHhc-CcCceEEEECCCcCC-HHHHHH-HhCCCcccCCC---C-CccceEEEeeCCeee
Confidence 9999999989999888888776422 346899999999985 455554 44322211110 0 11111111 1
Q ss_pred Eecccc-------hHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC-----------------------
Q 013189 378 FVHESD-------KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN----------------------- 427 (448)
Q Consensus 378 ~~~~~~-------k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~----------------------- 427 (448)
+..... +...+.+.+. .++++||||+++++|+.++..|...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~ 288 (702)
T 2p6r_A 218 LFDGAFSTSRRVKFEELVEECVA---------ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMS 288 (702)
T ss_dssp EEETTEEEEEECCHHHHHHHHHH---------TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHH
T ss_pred ccCcchhhhhhhhHHHHHHHHHh---------cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhcccccc
Confidence 111111 3334444432 1678999999999999999998753
Q ss_pred -------CCCeEEecCCCCHHHHHHHh
Q 013189 428 -------GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 428 -------g~~~~~iHg~~~q~eR~~~l 447 (448)
++.+..+||+|++++|..++
T Consensus 289 ~~l~~~~~~~v~~~h~~l~~~~R~~v~ 315 (702)
T 2p6r_A 289 RKLAECVRKGAAFHHAGLLNGQRRVVE 315 (702)
T ss_dssp HHHHHHHHTTCCEECTTSCHHHHHHHH
T ss_pred HHHHHHHhcCeEEecCCCCHHHHHHHH
Confidence 23578899999999998774
No 43
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=7.2e-32 Score=283.08 Aligned_cols=171 Identities=16% Similarity=0.206 Sum_probs=142.0
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
.+|+|+|.++|+.++.++|++++++||+|||++|++|+++.+.... ...++++|||+||++|+.|+++++++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~--------~~~~~~~lil~P~~~L~~q~~~~~~~ 74 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP--------CGQKGKVVFFANQIPVYEQQATVFSR 74 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC--------SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc--------cCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999999998886542 12246799999999999999999999
Q ss_pred hcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccc-cCCCeeEEEEecCCccCcCC-CHHHHHHHHH
Q 013189 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRMLDMG-FEPQIRKIVQ 323 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~-~l~~v~~lVlDEah~ll~~g-f~~~i~~i~~ 323 (448)
++...++++..++|+.....+...+..+++|+|+||++|.+++....+ .+.++++|||||||++...+ +...+...+.
T Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 154 (555)
T 3tbk_A 75 YFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLD 154 (555)
T ss_dssp HHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHH
T ss_pred HhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHH
Confidence 988889999999999987777777777899999999999999988776 78999999999999999875 3333323333
Q ss_pred H-cCCCCCCCceEEEEeccCCh
Q 013189 324 Q-MDMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 324 ~-l~~~~~~~~q~i~~SAT~~~ 344 (448)
. +........|+++||||++.
T Consensus 155 ~~~~~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 155 HKLGESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp HHTSSCCSCCCEEEEEESCCCC
T ss_pred hhhccccCCCCeEEEEecCccc
Confidence 2 22232356799999999843
No 44
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.7e-33 Score=315.38 Aligned_cols=246 Identities=15% Similarity=0.214 Sum_probs=201.8
Q ss_pred HCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013189 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~ 241 (448)
.+||. | |+|.++||.++.|+|++++||||||||+ |++|++..+... ++++|||+||++||.|+++
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~------------~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK------------GKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT------------SCCEEEEESCHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc------------CCeEEEEeccHHHHHHHHH
Confidence 57999 9 9999999999999999999999999998 999999877542 3679999999999999999
Q ss_pred HHHHhcccCCc----EEEEEECCCCHHHH---HHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCC
Q 013189 242 EAKKFSYQTGV----KVVVAYGGAPINQQ---LRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGF 314 (448)
Q Consensus 242 ~~~~~~~~~~~----~~~~~~gg~~~~~~---~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf 314 (448)
.+++++...++ ++..++||.+...+ ...+.. ++|+|+||++|++++.+ +.++++|||||||+|++ |
T Consensus 118 ~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~ 190 (1054)
T 1gku_B 118 TIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--A 190 (1054)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--S
T ss_pred HHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--c
Confidence 99999887788 89999999988764 344455 99999999999998775 67999999999999999 4
Q ss_pred HHHHHHHHHHcCC-------CCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHHH
Q 013189 315 EPQIRKIVQQMDM-------PPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSH 387 (448)
Q Consensus 315 ~~~i~~i~~~l~~-------~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~ 387 (448)
..+++.++..+.. ..+..+|+++||||++.. ..++..++.++..+.+.........+.+.+. +.+|...
T Consensus 191 ~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~~~ 266 (1054)
T 1gku_B 191 SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESIST 266 (1054)
T ss_dssp THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCTTT
T ss_pred cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHHHH
Confidence 6788888887731 112457899999999888 6666666666655555555555666777655 3566667
Q ss_pred HHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHH
Q 013189 388 LMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQR 442 (448)
Q Consensus 388 L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~e 442 (448)
|.+++... +.++||||+|++.|+.+++.|... +++..+||+|....
T Consensus 267 L~~ll~~~--------~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~~~l 312 (1054)
T 1gku_B 267 LSSILEKL--------GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKKGDY 312 (1054)
T ss_dssp THHHHTTS--------CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSSHHH
T ss_pred HHHHHhhc--------CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHHHHH
Confidence 77777653 457999999999999999999988 99999999996543
No 45
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.2e-32 Score=293.20 Aligned_cols=262 Identities=18% Similarity=0.199 Sum_probs=199.3
Q ss_pred HCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013189 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~ 241 (448)
.+|+ .|+++|..++|.++.|+ |+.++||+|||++|.+|++...+. +..++||+||++||.|+++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~-------------g~~v~VvTpTreLA~Qdae 170 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA-------------GNGVHIVTVNDYLAKRDSE 170 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT-------------TSCEEEEESSHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh-------------CCCeEEEeCCHHHHHHHHH
Confidence 4688 99999999999999998 999999999999999999755442 1349999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHH-HHHHhcc------cccCCCeeEEEEecCCccC-cC-
Q 013189 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML-DM- 312 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L-~~~l~~~------~~~l~~v~~lVlDEah~ll-~~- 312 (448)
.+..+....++++.+++||.+.. .+.+..+|||+|+||++| .|+|..+ .+.+..+.++||||||.|| ++
T Consensus 171 ~m~~l~~~lGLsv~~i~gg~~~~--~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDea 248 (922)
T 1nkt_A 171 WMGRVHRFLGLQVGVILATMTPD--ERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEA 248 (922)
T ss_dssp HHHHHHHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGG
T ss_pred HHHHHHhhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcC
Confidence 99999999999999999999854 344455799999999999 7888654 3567899999999999998 43
Q ss_pred --------------CCHHHHHHHHHHcCCC-----CCCCceEE-----------------EEeccCCh---HHHHHH--H
Q 013189 313 --------------GFEPQIRKIVQQMDMP-----PPGMRQTM-----------------LFSATFPK---EIQRLA--S 351 (448)
Q Consensus 313 --------------gf~~~i~~i~~~l~~~-----~~~~~q~i-----------------~~SAT~~~---~v~~l~--~ 351 (448)
+|..++..|+..+... ..+.+|++ +||||++. .+...+ .
T Consensus 249 rtPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~ 328 (922)
T 1nkt_A 249 RTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAK 328 (922)
T ss_dssp GSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHH
T ss_pred ccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHH
Confidence 5889999999999210 01678999 99999875 333322 1
Q ss_pred Hhhc-C--cE-----EEEecc-----------------------------ccCccccee---------------------
Q 013189 352 DFLA-N--YI-----FLAVGR-----------------------------VGSSTDLIV--------------------- 373 (448)
Q Consensus 352 ~~l~-~--~~-----~i~v~~-----------------------------~~~~~~~i~--------------------- 373 (448)
.++. + |+ .+.|+. ...+...|+
T Consensus 329 ~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te 408 (922)
T 1nkt_A 329 ELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTE 408 (922)
T ss_dssp HHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhH
Confidence 2222 1 11 111110 001111122
Q ss_pred --------------------------EEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC
Q 013189 374 --------------------------QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN 427 (448)
Q Consensus 374 --------------------------q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~ 427 (448)
+.++++...+|...+.+.+..... ++.++||||+|++.++.|+..|...
T Consensus 409 ~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~-----~gqpvLVft~Sie~sE~Ls~~L~~~ 483 (922)
T 1nkt_A 409 AAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYA-----KGQPVLIGTTSVERSEYLSRQFTKR 483 (922)
T ss_dssp HHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHH-----TTCCEEEEESCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh-----cCCcEEEEECCHHHHHHHHHHHHHC
Confidence 123455667788888888865432 2568999999999999999999999
Q ss_pred CCCeEEecCCCCHHHHHHH
Q 013189 428 GFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 428 g~~~~~iHg~~~q~eR~~~ 446 (448)
|+++..|||++.+.||..+
T Consensus 484 Gi~~~vLnak~~~rEa~ii 502 (922)
T 1nkt_A 484 RIPHNVLNAKYHEQEATII 502 (922)
T ss_dssp TCCCEEECSSCHHHHHHHH
T ss_pred CCCEEEecCChhHHHHHHH
Confidence 9999999999877776543
No 46
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.98 E-value=8.6e-32 Score=295.25 Aligned_cols=174 Identities=20% Similarity=0.176 Sum_probs=137.0
Q ss_pred HCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013189 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~ 241 (448)
.+++.+|+|+|.++|+.++.++|++++++||+|||++|++|++..+.... ...++++|||+||++|+.|+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~--------~~~~~~~Lvl~Pt~~L~~Q~~~ 314 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP--------AGRKAKVVFLATKVPVYEQQKN 314 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC--------SSCCCCEEEECSSHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc--------ccCCCeEEEEeCCHHHHHHHHH
Confidence 35788999999999999999999999999999999999999998886532 1224679999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccc-cCCCeeEEEEecCCccCcCCCHHH-HH
Q 013189 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRMLDMGFEPQ-IR 319 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~-~l~~v~~lVlDEah~ll~~gf~~~-i~ 319 (448)
.+++++...++++..++|+.....+...+..+++|+|+||++|.+++....+ .+.++++|||||||++...+.... +.
T Consensus 315 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~ 394 (797)
T 4a2q_A 315 VFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMT 394 (797)
T ss_dssp HHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHH
T ss_pred HHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHH
Confidence 9999988778999999999988777777778899999999999999988776 789999999999999988653222 22
Q ss_pred HHHHHcCCCCCCCceEEEEeccCC
Q 013189 320 KIVQQMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 320 ~i~~~l~~~~~~~~q~i~~SAT~~ 343 (448)
.++...........|+|+||||+.
T Consensus 395 ~~~~~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 395 RYLEQKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp HHHHHHHTTCCCCCEEEEEESCCC
T ss_pred HHHHHhhccCCCCCeEEEEcCCcc
Confidence 333222112244578999999985
No 47
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=3.9e-31 Score=293.77 Aligned_cols=176 Identities=20% Similarity=0.190 Sum_probs=135.3
Q ss_pred HHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHH
Q 013189 160 IRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI 239 (448)
Q Consensus 160 l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi 239 (448)
....++.+|+|+|.++|+.++.|+|++++++||+|||++|++|++..+.... ...++++|||+||++|+.|+
T Consensus 241 ~~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~--------~~~~~~vLvl~Pt~~L~~Q~ 312 (936)
T 4a2w_A 241 PPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP--------AGRKAKVVFLATKVPVYEQQ 312 (936)
T ss_dssp -------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC--------SSCCCCEEEECSSHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc--------ccCCCeEEEEeCCHHHHHHH
Confidence 3344788999999999999999999999999999999999999998775432 12246799999999999999
Q ss_pred HHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccc-cCCCeeEEEEecCCccCcCC-CHHH
Q 013189 240 HVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRMLDMG-FEPQ 317 (448)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~-~l~~v~~lVlDEah~ll~~g-f~~~ 317 (448)
+++++++....++++..++|+.....+...+..+++|+|+||++|.+++....+ .+.++++|||||||++...+ +...
T Consensus 313 ~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i 392 (936)
T 4a2w_A 313 KNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVL 392 (936)
T ss_dssp HHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHH
T ss_pred HHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHH
Confidence 999999988778999999999987776666767799999999999999988766 78899999999999998865 2222
Q ss_pred HHHHHHHcCCCCCCCceEEEEeccCC
Q 013189 318 IRKIVQQMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 318 i~~i~~~l~~~~~~~~q~i~~SAT~~ 343 (448)
+..++...........|+++||||+.
T Consensus 393 ~~~~~~~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 393 MTRYLEQKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp HHHHHHHHHTTCSCCCEEEEEESCCC
T ss_pred HHHHHHHhhccCCCcCeEEEecCCcc
Confidence 33333322112244578999999984
No 48
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-30 Score=290.01 Aligned_cols=251 Identities=18% Similarity=0.184 Sum_probs=190.1
Q ss_pred HCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013189 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~ 241 (448)
.++|. |+|+|.++|+.+..++++++++|||||||++|.++++..+.. +.++||++||++|+.|+++
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~-------------g~rvL~l~PtkaLa~Q~~~ 147 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-------------KQRVIYTSPIKALSNQKYR 147 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT-------------TCEEEEEESSHHHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc-------------CCeEEEECChHHHHHHHHH
Confidence 44664 999999999999999999999999999999999999876632 2579999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHH
Q 013189 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKI 321 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i 321 (448)
.++++.. ++.+++|+.... ..++|+|+||++|.+++.+....+.++++|||||||+|.++++...+..+
T Consensus 148 ~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~i 216 (1010)
T 2xgj_A 148 ELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEET 216 (1010)
T ss_dssp HHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHH
T ss_pred HHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHH
Confidence 9998754 577788887653 24799999999999999887778899999999999999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeccCChHH--HHHHHHhhcCcEEEEeccccCcccceeEEEEEe---------cccc-------
Q 013189 322 VQQMDMPPPGMRQTMLFSATFPKEI--QRLASDFLANYIFLAVGRVGSSTDLIVQRVEFV---------HESD------- 383 (448)
Q Consensus 322 ~~~l~~~~~~~~q~i~~SAT~~~~v--~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~---------~~~~------- 383 (448)
+..+ +...|+|+||||++... ..++.....++..+..... ....+.+++... +...
T Consensus 217 l~~l----~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (1010)
T 2xgj_A 217 IILL----PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHYLFPAHGDGIYLVVDEKSTFREENF 290 (1010)
T ss_dssp HHHS----CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC--CSSCEEEEEEETTSSCCEEEECTTCCBCHHHH
T ss_pred HHhc----CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEEEEecCCcceeeeeccccccchHHH
Confidence 9988 67899999999998643 2444444455555444322 112233333221 1000
Q ss_pred ----------------------------h--------HHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC
Q 013189 384 ----------------------------K--------RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN 427 (448)
Q Consensus 384 ----------------------------k--------~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~ 427 (448)
| ...+..++...... ...++||||++++.|+.++..|...
T Consensus 291 ~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~----~~~~~IVF~~sr~~~e~la~~L~~~ 366 (1010)
T 2xgj_A 291 QKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK----KYNPVIVFSFSKRDCEELALKMSKL 366 (1010)
T ss_dssp HHHHHTCC------------------------------CHHHHHHHHHHHH----TCCSEEEEESSHHHHHHHHHTTTTS
T ss_pred HHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhc----CCCCEEEEECCHHHHHHHHHHHHhC
Confidence 0 11222233322211 1458999999999999999999776
Q ss_pred CCC---------------------------------------eEEecCCCCHHHHHHHh
Q 013189 428 GFP---------------------------------------ATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 428 g~~---------------------------------------~~~iHg~~~q~eR~~~l 447 (448)
++. +..+||+|++.+|+.++
T Consensus 367 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve 425 (1010)
T 2xgj_A 367 DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIE 425 (1010)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHH
Confidence 553 77899999999999875
No 49
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.97 E-value=9.8e-31 Score=290.88 Aligned_cols=156 Identities=21% Similarity=0.264 Sum_probs=135.9
Q ss_pred CCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013189 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~ 243 (448)
+| .|+|+|.++|+.++.++|+++++|||||||++|+++++..+.. ++++||++||++|+.|+++.+
T Consensus 37 ~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~-------------g~~vlvl~PtraLa~Q~~~~l 102 (997)
T 4a4z_A 37 PF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN-------------MTKTIYTSPIKALSNQKFRDF 102 (997)
T ss_dssp SS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT-------------TCEEEEEESCGGGHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc-------------CCeEEEEeCCHHHHHHHHHHH
Confidence 44 4899999999999999999999999999999999998875421 357999999999999999999
Q ss_pred HHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHH
Q 013189 244 KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQ 323 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~ 323 (448)
+++.. ++++..++|+.... ..++|+|+||++|.+++......+.++++|||||||++.+++|...+..++.
T Consensus 103 ~~~~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~ 173 (997)
T 4a4z_A 103 KETFD--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVII 173 (997)
T ss_dssp HTTC----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHH
T ss_pred HHHcC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHH
Confidence 98653 57888888887643 2479999999999999988777789999999999999999999999999999
Q ss_pred HcCCCCCCCceEEEEeccCChHH
Q 013189 324 QMDMPPPGMRQTMLFSATFPKEI 346 (448)
Q Consensus 324 ~l~~~~~~~~q~i~~SAT~~~~v 346 (448)
.+ +...|+|+||||++...
T Consensus 174 ~l----~~~v~iIlLSAT~~n~~ 192 (997)
T 4a4z_A 174 ML----PQHVKFILLSATVPNTY 192 (997)
T ss_dssp HS----CTTCEEEEEECCCTTHH
T ss_pred hc----ccCCCEEEEcCCCCChH
Confidence 98 67899999999997553
No 50
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=7.6e-30 Score=295.61 Aligned_cols=274 Identities=16% Similarity=0.156 Sum_probs=197.1
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHhhhHh-cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEc
Q 013189 152 LGEALNLNIRRCKYVKPTPVQRHAIPISI-GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA 230 (448)
Q Consensus 152 l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~ 230 (448)
|.+...+++...+|..|+|+|.++++.++ .++|++++||||||||++|.+|+++.+.+.. +.++|||+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-----------~~kavyi~ 979 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-----------EGRCVYIT 979 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-----------TCCEEEEC
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-----------CCEEEEEc
Confidence 56778888888899999999999999987 4678999999999999999999999887532 24699999
Q ss_pred CcHHHHHHHHHHHHH-hcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhccc--ccCCCeeEEEEecCC
Q 013189 231 PTRELSSQIHVEAKK-FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR--VSLQMIRYLALDEAD 307 (448)
Q Consensus 231 PtreLa~qi~~~~~~-~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~--~~l~~v~~lVlDEah 307 (448)
|+++||.|+++.+++ |....++++..++|+..... + ....++|+||||++|..++.+.. ..+++|++||+||+|
T Consensus 980 P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~--~-~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H 1056 (1724)
T 4f92_B 980 PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDL--K-LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH 1056 (1724)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHH--H-HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGG
T ss_pred ChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcch--h-hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechh
Confidence 999999999999965 66677899999888765332 2 22357999999999988886543 347899999999999
Q ss_pred ccCcCCCHHHHHHHHHHcC---CCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccch
Q 013189 308 RMLDMGFEPQIRKIVQQMD---MPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDK 384 (448)
Q Consensus 308 ~ll~~gf~~~i~~i~~~l~---~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k 384 (448)
+|.+. ....+..++..+. ...+...|+|+||||++. ..+++..+-.+...+...........+..++........
T Consensus 1057 ~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~ 1134 (1724)
T 4f92_B 1057 LIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHT 1134 (1724)
T ss_dssp GGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSH
T ss_pred hcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCc
Confidence 88764 5666666665542 122567899999999975 455665543333222222222222334444444433332
Q ss_pred HHHH-------HHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC------------------------------
Q 013189 385 RSHL-------MDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN------------------------------ 427 (448)
Q Consensus 385 ~~~L-------~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~------------------------------ 427 (448)
...+ ...+... ...+++||||+|++.|+.++..|...
T Consensus 1135 ~~~~~~~~~~~~~~i~~~------~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L 1208 (1724)
T 4f92_B 1135 QTRLLSMAKPVYHAITKH------SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTL 1208 (1724)
T ss_dssp HHHHHTTHHHHHHHHHHH------CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHH
T ss_pred hhhhhhhcchHHHHHHHh------cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHH
Confidence 2222 2222222 13678999999999999988776421
Q ss_pred ----CCCeEEecCCCCHHHHHHHh
Q 013189 428 ----GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 428 ----g~~~~~iHg~~~q~eR~~~l 447 (448)
..-+..+||+|++.+|+.+.
T Consensus 1209 ~~~l~~GIa~hHagL~~~~R~~VE 1232 (1724)
T 4f92_B 1209 KETLLNGVGYLHEGLSPMERRLVE 1232 (1724)
T ss_dssp HHHHHTTEEEECTTSCHHHHHHHH
T ss_pred HHHHhCCEEEECCCCCHHHHHHHH
Confidence 23478899999999998763
No 51
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=6.3e-29 Score=255.14 Aligned_cols=169 Identities=19% Similarity=0.170 Sum_probs=136.4
Q ss_pred CCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
.|+|+|.++++.++.+ +++++++||+|||++++++++..+.. ...++|||+|+++|+.|+.++++++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~------------~~~~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK------------YGGKVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH------------SCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc------------CCCeEEEEECCHHHHHHHHHHHHHH
Confidence 6999999999999988 99999999999999999999887651 1245999999999999999999998
Q ss_pred cccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcC
Q 013189 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD 326 (448)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~ 326 (448)
......++..++|+......... ...++|+|+||+.|...+....+.+.++++|||||||++........+...+...
T Consensus 76 ~~~~~~~v~~~~g~~~~~~~~~~-~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~- 153 (494)
T 1wp9_A 76 FNLPPEKIVALTGEKSPEERSKA-WARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQ- 153 (494)
T ss_dssp BCSCGGGEEEECSCSCHHHHHHH-HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHH-
T ss_pred hCcchhheEEeeCCcchhhhhhh-ccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhc-
Confidence 75555688888888877654433 3458999999999999998877889999999999999998765444555555554
Q ss_pred CCCCCCceEEEEeccCCh---HHHHHHHHh
Q 013189 327 MPPPGMRQTMLFSATFPK---EIQRLASDF 353 (448)
Q Consensus 327 ~~~~~~~q~i~~SAT~~~---~v~~l~~~~ 353 (448)
....++++||||+.. ++..++..+
T Consensus 154 ---~~~~~~l~lTaTp~~~~~~~~~l~~~l 180 (494)
T 1wp9_A 154 ---AKNPLVIGLTASPGSTPEKIMEVINNL 180 (494)
T ss_dssp ---CSSCCEEEEESCSCSSHHHHHHHHHHT
T ss_pred ---CCCCeEEEEecCCCCCcHHHHHHHHhc
Confidence 445789999999963 344454443
No 52
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.96 E-value=3.3e-29 Score=290.29 Aligned_cols=274 Identities=16% Similarity=0.161 Sum_probs=191.7
Q ss_pred CCCCCCHHHHhHhhhHh-cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013189 164 KYVKPTPVQRHAIPISI-GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~ 242 (448)
||++++++|.+++|.++ +++|+++|||||||||++|.+++++.+.+..... ......+.++|||+|+++||.|+++.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~--~~~~~~~~k~lyiaP~kALa~e~~~~ 153 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMD--GTINVDDFKIIYIAPMRSLVQEMVGS 153 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTT--SSCCTTSCEEEEECSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhcccc--ccccCCCCEEEEECCHHHHHHHHHHH
Confidence 79999999999999877 6889999999999999999999999987653221 11223467899999999999999999
Q ss_pred HHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhccc--ccCCCeeEEEEecCCccCcCCCHHHHHH
Q 013189 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR--VSLQMIRYLALDEADRMLDMGFEPQIRK 320 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~--~~l~~v~~lVlDEah~ll~~gf~~~i~~ 320 (448)
+++.....+++|..++|+.....+. ...++|+|+||++|..++.+.. ..++.|++|||||+|.+-+ .....++.
T Consensus 154 l~~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~ 229 (1724)
T 4f92_B 154 FGKRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEA 229 (1724)
T ss_dssp HHHHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHH
T ss_pred HHHHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHH
Confidence 9988888899999999998754321 2358999999999977665532 2478999999999997755 56666666
Q ss_pred HHHHcCC---CCCCCceEEEEeccCChHHHHHHHHhhcCc-EEEEeccccCcccceeEEEEEecccch---HHHHHHHHH
Q 013189 321 IVQQMDM---PPPGMRQTMLFSATFPKEIQRLASDFLANY-IFLAVGRVGSSTDLIVQRVEFVHESDK---RSHLMDLLH 393 (448)
Q Consensus 321 i~~~l~~---~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~-~~i~v~~~~~~~~~i~q~~~~~~~~~k---~~~L~~ll~ 393 (448)
++.++.. ..+...|+|++|||+|+ ..+++...-.++ ..+.+......+..+.+.+..+..... ...+.+.+.
T Consensus 230 ~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~ 308 (1724)
T 4f92_B 230 LVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVY 308 (1724)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHH
Confidence 6554310 11456899999999975 455554332221 111111111122234555544443322 223333333
Q ss_pred HHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC-------------------------------------CCCeEEecC
Q 013189 394 AQVANGVHGKQALTLVFVETKKGADALEHWLYMN-------------------------------------GFPATTIHG 436 (448)
Q Consensus 394 ~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~-------------------------------------g~~~~~iHg 436 (448)
...... ..++++||||+|++.|+.++..|... ..-+...||
T Consensus 309 ~~v~~~--~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHa 386 (1724)
T 4f92_B 309 EKIMEH--AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHA 386 (1724)
T ss_dssp HHHTTC--CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECS
T ss_pred HHHHHH--hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcC
Confidence 332222 13568999999999999999887531 123778999
Q ss_pred CCCHHHHHHH
Q 013189 437 DRTQQRTSIE 446 (448)
Q Consensus 437 ~~~q~eR~~~ 446 (448)
+|++++|..+
T Consensus 387 gL~~~~R~~v 396 (1724)
T 4f92_B 387 GMTRVDRTLV 396 (1724)
T ss_dssp SSCTHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9999999875
No 53
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.96 E-value=3.6e-30 Score=278.54 Aligned_cols=171 Identities=19% Similarity=0.274 Sum_probs=129.8
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHH-HHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI-HVEAK 244 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi-~~~~~ 244 (448)
.+|+|+|.++|+.++.++|++++++||+|||++|++|++..+...... ....++|||+||++|+.|+ +++++
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-------~~~~~vlvl~P~~~L~~Q~~~~~l~ 78 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-------SEPGKVIVLVNKVLLVEQLFRKEFQ 78 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-------TCCCCBCCEESCSHHHHHHHHHTHH
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-------CCCCeEEEEECCHHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999888765321 1224699999999999999 99999
Q ss_pred HhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHH------hcccccCCCeeEEEEecCCccCcCC-CHHH
Q 013189 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLL------ERARVSLQMIRYLALDEADRMLDMG-FEPQ 317 (448)
Q Consensus 245 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l------~~~~~~l~~v~~lVlDEah~ll~~g-f~~~ 317 (448)
++... ++++..++|+.....+...+...++|+|+||++|.+.+ ....+.+..+++|||||||++...+ +...
T Consensus 79 ~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i 157 (699)
T 4gl2_A 79 PFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 157 (699)
T ss_dssp HHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSH
T ss_pred HHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHH
Confidence 98754 48899999998777666677778999999999999988 4445678899999999999986644 3333
Q ss_pred HHHHHHHc---------CCCCCCCceEEEEeccCCh
Q 013189 318 IRKIVQQM---------DMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 318 i~~i~~~l---------~~~~~~~~q~i~~SAT~~~ 344 (448)
+..++... ........|+|+||||+..
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 158 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred HHHHHHhhhcccccccccccCCCCCEEEEecccccc
Confidence 33222221 0111245689999999986
No 54
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.96 E-value=7.9e-28 Score=271.26 Aligned_cols=258 Identities=16% Similarity=0.126 Sum_probs=191.9
Q ss_pred CCCHHHHHHHH-HCCCCCCCHHHHhHhhhHhc----CC--CeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCC
Q 013189 151 DLGEALNLNIR-RCKYVKPTPVQRHAIPISIG----GR--DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 151 ~l~~~l~~~l~-~~~~~~pt~~Q~~~i~~i~~----g~--d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
.++..+.+.+. .++|. |||+|.++|+.++. ++ |++++++||+|||++|+++++..+.. +
T Consensus 587 ~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~-------------g 652 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-------------H 652 (1151)
T ss_dssp CCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-------------T
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-------------C
Confidence 45555555554 45664 79999999998875 66 99999999999999999998875432 3
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHH---HHHhcC-CcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL---RELERG-VDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~~-~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.+++||+||++||.|+++.++++....++++..+.+......+. ..+..+ ++|+|+||+.|. ..+.+++++
T Consensus 653 ~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~ 727 (1151)
T 2eyq_A 653 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLG 727 (1151)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEE
T ss_pred CeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccc
Confidence 47999999999999999999988777788898888877655443 334444 999999997653 345689999
Q ss_pred EEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEe
Q 013189 300 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFV 379 (448)
Q Consensus 300 ~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~ 379 (448)
+|||||+|++ ......++..+ +...++++||||+.+....++...+.++..+.... .....+..++...
T Consensus 728 lvIiDEaH~~-----g~~~~~~l~~l----~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~--~~r~~i~~~~~~~ 796 (1151)
T 2eyq_A 728 LLIVDEEHRF-----GVRHKERIKAM----RANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP--ARRLAVKTFVREY 796 (1151)
T ss_dssp EEEEESGGGS-----CHHHHHHHHHH----HTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCC--CBCBCEEEEEEEC
T ss_pred eEEEechHhc-----ChHHHHHHHHh----cCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCC--CCccccEEEEecC
Confidence 9999999995 23456666666 45689999999998877777776666654443221 1122333333322
Q ss_pred cccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC--CCCeEEecCCCCHHHHHHHh
Q 013189 380 HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 380 ~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~--g~~~~~iHg~~~q~eR~~~l 447 (448)
.+...+..++.... .+++++|||++++.|+.+++.|... ++.+..+||+|++.+|++++
T Consensus 797 ---~~~~i~~~il~~l~------~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il 857 (1151)
T 2eyq_A 797 ---DSMVVREAILREIL------RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVM 857 (1151)
T ss_dssp ---CHHHHHHHHHHHHT------TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHh------cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHH
Confidence 22222333333332 2678999999999999999999887 88999999999999999876
No 55
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.95 E-value=3e-28 Score=263.51 Aligned_cols=256 Identities=16% Similarity=0.188 Sum_probs=181.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHhHhhhHhcC------CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEE
Q 013189 154 EALNLNIRRCKYVKPTPVQRHAIPISIGG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLAL 227 (448)
Q Consensus 154 ~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~l 227 (448)
+.+.+.+..++| +||++|+++|+.++.+ +|++++++||||||++|++|++..+.. +.++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-------------g~qvl 421 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-------------GFQTA 421 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-------------TSCEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-------------CCeEE
Confidence 445555678899 9999999999988765 699999999999999999999987743 24699
Q ss_pred EEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHH---HHHhcC-CcEEEeChhHHHHHHhcccccCCCeeEEEE
Q 013189 228 ILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL---RELERG-VDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 228 il~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~~-~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVl 303 (448)
||+||++||.|+++.++++....++++..++|+....... ..+..+ ++|+|+||+.|.+ .+.+.++++|||
T Consensus 422 vlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVI 496 (780)
T 1gm5_A 422 FMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVII 496 (780)
T ss_dssp EECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEE
T ss_pred EEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEe
Confidence 9999999999999999999888889999999999876643 344444 9999999998754 456899999999
Q ss_pred ecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccc
Q 013189 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~ 383 (448)
||+|++.. .. +. .+... ....|+++||||+.+....+.. ..+.....+.........+.. .+....
T Consensus 497 DEaHr~g~---~q--r~---~l~~~-~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~~p~~r~~i~~---~~~~~~ 562 (780)
T 1gm5_A 497 DEQHRFGV---KQ--RE---ALMNK-GKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDEMPPGRKEVQT---MLVPMD 562 (780)
T ss_dssp ESCCCC----------C---CCCSS-SSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECCCCSSCCCCEE---CCCCSS
T ss_pred cccchhhH---HH--HH---HHHHh-CCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeeccCCCCcceEE---EEeccc
Confidence 99998632 11 11 11111 2357899999998766544332 222211111111111122222 122334
Q ss_pred hHHHHHHHHHHHHhcCCCCCCccEEEEeCchH--------HHHHHHHHHHH---CCCCeEEecCCCCHHHHHHHh
Q 013189 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKK--------GADALEHWLYM---NGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 384 k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~--------~a~~l~~~L~~---~g~~~~~iHg~~~q~eR~~~l 447 (448)
+...+.+.+..... .+.+++|||++++ .|+.+++.|.. .++.+..+||+|++.+|++++
T Consensus 563 ~~~~l~~~i~~~l~-----~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~ 632 (780)
T 1gm5_A 563 RVNEVYEFVRQEVM-----RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVM 632 (780)
T ss_dssp THHHHHHHHHHHTT-----TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHH
T ss_pred hHHHHHHHHHHHHh-----cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHH
Confidence 45566666665432 2678999999764 57888999987 478999999999999998875
No 56
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.95 E-value=1.9e-29 Score=267.68 Aligned_cols=240 Identities=16% Similarity=0.141 Sum_probs=166.6
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEE
Q 013189 150 IDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALIL 229 (448)
Q Consensus 150 ~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil 229 (448)
+++++.+.+.|... +.+|+|+|+++++.+++++|++++|+||||||++|++|+++.+... ++++|||
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~------------~~~vLvl 221 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR------------RLRTLIL 221 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT------------TCCEEEE
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC------------CCeEEEE
Confidence 45666666655543 5789999999999999999999999999999999999999988652 2569999
Q ss_pred cCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCcc
Q 013189 230 APTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (448)
Q Consensus 230 ~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~l 309 (448)
+|||+||.|+++.++.+ .+. +.+.. .. ..-..+..|.++|.+.|...+... ..+.++++|||||||+|
T Consensus 222 ~PtreLa~Qi~~~l~~~------~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~ 289 (618)
T 2whx_A 222 APTRVVAAEMEEALRGL------PIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT 289 (618)
T ss_dssp ESSHHHHHHHHHHTTTS------CEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC
T ss_pred cChHHHHHHHHHHhcCC------cee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC
Confidence 99999999999988743 222 11111 00 000112356677777777665543 35899999999999998
Q ss_pred CcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHHHHH
Q 013189 310 LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLM 389 (448)
Q Consensus 310 l~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~ 389 (448)
+++|...+..|+..+. ...+|+|+||||++..+..++. .++..+.+... +. ..+...++
T Consensus 290 -~~~~~~~~~~i~~~l~---~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-------------~~-~~~~~~ll 348 (618)
T 2whx_A 290 -DPCSVAARGYISTRVE---MGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-------------IP-ERSWNTGF 348 (618)
T ss_dssp -SHHHHHHHHHHHHHHH---HTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-------------CC-SSCCSSSC
T ss_pred -CccHHHHHHHHHHHhc---ccCccEEEEECCCchhhhhhhc---cCCceeeeccc-------------CC-HHHHHHHH
Confidence 7778888888888872 2568999999999887553322 13332222211 00 11112233
Q ss_pred HHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 390 DLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 390 ~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
..+... .+++||||+|++.|+.+++.|...++++..+||+ +|++++
T Consensus 349 ~~l~~~--------~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l 394 (618)
T 2whx_A 349 DWITDY--------QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEY 394 (618)
T ss_dssp HHHHHC--------CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHT
T ss_pred HHHHhC--------CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHH
Confidence 333332 5679999999999999999999999999999995 455443
No 57
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.95 E-value=4.9e-28 Score=252.39 Aligned_cols=251 Identities=13% Similarity=0.092 Sum_probs=179.8
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
.+|+|+|.++|+.++.++|++++++||+|||++|+++++..+... .+++|||+||++|+.|+++.+++
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~------------~~~vlvl~P~~~L~~Q~~~~~~~ 179 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY------------EGKILIIVPTTALTTQMADDFVD 179 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC------------SSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC------------CCeEEEEECcHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999888766421 13799999999999999999999
Q ss_pred hcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+....++++..++++.....+ +...++|+|+||+.|.. .....+.++++|||||||++.. ..+..++..+
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~ 249 (510)
T 2oca_A 180 YRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGL 249 (510)
T ss_dssp TTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGC
T ss_pred hhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhc
Confidence 977667888888888776543 34568999999997643 2334578899999999999876 5677777777
Q ss_pred CCCCCCCceEEEEeccCChHHHHHHH-HhhcCcEEEEeccccC------cccceeEEEEEec------------------
Q 013189 326 DMPPPGMRQTMLFSATFPKEIQRLAS-DFLANYIFLAVGRVGS------STDLIVQRVEFVH------------------ 380 (448)
Q Consensus 326 ~~~~~~~~q~i~~SAT~~~~v~~l~~-~~l~~~~~i~v~~~~~------~~~~i~q~~~~~~------------------ 380 (448)
....++++||||++.....+.. ..+.++..+.+..... ....+........
T Consensus 250 ----~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (510)
T 2oca_A 250 ----NNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKI 325 (510)
T ss_dssp ----TTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHH
T ss_pred ----ccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHH
Confidence 5567899999999766433221 1122333222211100 0001111111111
Q ss_pred ---ccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 381 ---ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 381 ---~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
...+...+.+++...... ...++||||+ .++|+.|++.|...+.++..+||++++.+|++++
T Consensus 326 ~~~~~~~~~~l~~~l~~~~~~----~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~ 390 (510)
T 2oca_A 326 ITGLSKRNKWIAKLAIKLAQK----DENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMK 390 (510)
T ss_dssp HHTCHHHHHHHHHHHHHHHTT----TCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHhc----CCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHH
Confidence 112333455555544321 2455677777 8899999999999988999999999999999875
No 58
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.95 E-value=3.9e-28 Score=249.45 Aligned_cols=223 Identities=15% Similarity=0.127 Sum_probs=156.2
Q ss_pred CCCCCCHHHHhHhhhHhcCCCe-eEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013189 164 KYVKPTPVQRHAIPISIGGRDL-MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~~g~d~-li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~ 242 (448)
|+..|+|+|+ +||.++.++|+ ++++|||||||++|++|++..+... ++++||++|||+||.|+++.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~------------~~~~lvl~Ptr~La~Q~~~~ 67 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR------------RLRTLILAPTRVVAAEMEEA 67 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT------------TCCEEEEESSHHHHHHHHHH
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc------------CCcEEEECCCHHHHHHHHHH
Confidence 6788999986 79999998886 9999999999999999999877642 25699999999999999998
Q ss_pred HHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHH
Q 013189 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~ 322 (448)
+..+ .+......... ....+..|.++|++.|.+.+... ..+.++++|||||||++ +.++...+..+.
T Consensus 68 l~g~------~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~ 134 (451)
T 2jlq_A 68 LRGL------PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYIS 134 (451)
T ss_dssp TTTS------CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHH
T ss_pred hcCc------eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHH
Confidence 8643 22211111100 11224579999999998888654 45889999999999977 444444333333
Q ss_pred HHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCC
Q 013189 323 QQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHG 402 (448)
Q Consensus 323 ~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 402 (448)
.... +..+|+|+||||++..+..+ +..++..+.+... .+.. ....+.+.+...
T Consensus 135 ~~~~---~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~-~p~~-------------~~~~~~~~l~~~------- 187 (451)
T 2jlq_A 135 TRVE---MGEAAAIFMTATPPGSTDPF---PQSNSPIEDIERE-IPER-------------SWNTGFDWITDY------- 187 (451)
T ss_dssp HHHH---TTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECC-CCSS-------------CCSSSCHHHHHC-------
T ss_pred Hhhc---CCCceEEEEccCCCccchhh---hcCCCceEecCcc-CCch-------------hhHHHHHHHHhC-------
Confidence 3321 34689999999998765432 2233333333211 0000 001122333322
Q ss_pred CCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCH
Q 013189 403 KQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 403 ~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
.+++||||+|+++|+.+++.|...|+.+..+||++.+
T Consensus 188 -~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~ 224 (451)
T 2jlq_A 188 -QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFD 224 (451)
T ss_dssp -CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHH
T ss_pred -CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHHH
Confidence 5579999999999999999999999999999998764
No 59
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.95 E-value=1.2e-28 Score=260.41 Aligned_cols=217 Identities=18% Similarity=0.120 Sum_probs=157.2
Q ss_pred CCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013189 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 168 pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~ 247 (448)
+.+.|+.+++.+..++|++++||||||||++|.+|+++. +.++||++|||+||.|+++.+.+..
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----------------g~~vLVl~PTReLA~Qia~~l~~~~ 281 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----------------GYKVLVLNPSVAATLGFGAYMSKAH 281 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----------------TCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----------------CCeEEEEcchHHHHHHHHHHHHHHh
Confidence 445566666666788999999999999999999998751 2369999999999999999876653
Q ss_pred ccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCC
Q 013189 248 YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDM 327 (448)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~ 327 (448)
+.++...+|+.. +..+++|+|+||++| +....+.++++++||||||| +++++|...+..|++.+
T Consensus 282 ---g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l-- 345 (666)
T 3o8b_A 282 ---GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQA-- 345 (666)
T ss_dssp ---SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHT--
T ss_pred ---CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhh--
Confidence 345566677654 345689999999998 45566788999999999996 56778888899999988
Q ss_pred CCCCCce--EEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCc
Q 013189 328 PPPGMRQ--TMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQA 405 (448)
Q Consensus 328 ~~~~~~q--~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~ 405 (448)
+..+| +++||||++..+. ...+....+. ....... ........ +.. .+.+
T Consensus 346 --~~~~~~llil~SAT~~~~i~------~~~p~i~~v~---~~~~~~i---~~~~~~~~-------l~~-------~~~~ 397 (666)
T 3o8b_A 346 --ETAGARLVVLATATPPGSVT------VPHPNIEEVA---LSNTGEI---PFYGKAIP-------IEA-------IRGG 397 (666)
T ss_dssp --TTTTCSEEEEEESSCTTCCC------CCCTTEEEEE---CBSCSSE---EETTEEEC-------GGG-------SSSS
T ss_pred --hhcCCceEEEECCCCCcccc------cCCcceEEEe---ecccchh---HHHHhhhh-------hhh-------ccCC
Confidence 44444 7788999987422 1111111110 0001101 11111100 000 1267
Q ss_pred cEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHH
Q 013189 406 LTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTS 444 (448)
Q Consensus 406 ~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~ 444 (448)
++||||+|++.|+.+++.|...++++..+||+|++++|.
T Consensus 398 ~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~er~ 436 (666)
T 3o8b_A 398 RHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIP 436 (666)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGGSC
T ss_pred cEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHHHH
Confidence 899999999999999999999999999999999998764
No 60
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.95 E-value=1.2e-26 Score=252.02 Aligned_cols=273 Identities=14% Similarity=0.128 Sum_probs=186.9
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHh-cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCC
Q 013189 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISI-GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRT 221 (448)
Q Consensus 143 ~~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 221 (448)
++..|.+++|++.+.+.+...+ ..|+++|+.+|+.++ .+++++++++||||||+ ++|++. ...... ..
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll--~~~~~~------~~ 138 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFV--LFDEMP------HL 138 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHH--HHHHCG------GG
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHH--HHhccc------cC
Confidence 4678999999999999999877 789999999998777 56789999999999999 577662 221110 11
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhc-ccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeE
Q 013189 222 VYPLALILAPTRELSSQIHVEAKKFS-YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 222 ~~~~~lil~PtreLa~qi~~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~ 300 (448)
.+++++|++|+|+|+.|+++.+.+.. ...+..+........ ......+|+|+|||+|.+.+... ..+.++++
T Consensus 139 ~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~ 211 (773)
T 2xau_A 139 ENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSC 211 (773)
T ss_dssp GTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEE
T ss_pred CCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCE
Confidence 24579999999999999998776543 122222221111000 01135799999999999887654 35899999
Q ss_pred EEEecCCc-cCcCCC-HHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEE
Q 013189 301 LALDEADR-MLDMGF-EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEF 378 (448)
Q Consensus 301 lVlDEah~-ll~~gf-~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~ 378 (448)
|||||+|. +++..+ ...+..+.... ...|+|+||||++.+ .+. .++.+...+.+.. ....+.++|..
T Consensus 212 lIlDEah~R~ld~d~~~~~l~~l~~~~-----~~~~iIl~SAT~~~~--~l~-~~~~~~~vi~v~g---r~~pv~~~~~~ 280 (773)
T 2xau_A 212 IILDEAHERTLATDILMGLLKQVVKRR-----PDLKIIIMSATLDAE--KFQ-RYFNDAPLLAVPG---RTYPVELYYTP 280 (773)
T ss_dssp EEECSGGGCCHHHHHHHHHHHHHHHHC-----TTCEEEEEESCSCCH--HHH-HHTTSCCEEECCC---CCCCEEEECCS
T ss_pred EEecCccccccchHHHHHHHHHHHHhC-----CCceEEEEeccccHH--HHH-HHhcCCCcccccC---cccceEEEEec
Confidence 99999995 666332 23344444332 367999999999643 343 4455433343322 12335555544
Q ss_pred ecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHH-----------CCCCeEEecCCCCHHHHHHHh
Q 013189 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYM-----------NGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 379 ~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~-----------~g~~~~~iHg~~~q~eR~~~l 447 (448)
....++...++..+....... ..+++||||+++++|+.+++.|.. .++.+..+||+|++++|.+++
T Consensus 281 ~~~~~~~~~~l~~l~~~~~~~---~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~ 357 (773)
T 2xau_A 281 EFQRDYLDSAIRTVLQIHATE---EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIF 357 (773)
T ss_dssp SCCSCHHHHHHHHHHHHHHHS---CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGG
T ss_pred CCchhHHHHHHHHHHHHHHhc---CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHH
Confidence 444454444444333322111 267899999999999999999985 678899999999999999876
No 61
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.94 E-value=3.3e-28 Score=259.91 Aligned_cols=224 Identities=16% Similarity=0.203 Sum_probs=147.9
Q ss_pred HHHHCCCC-----CCCHHHH-----hHhhhHh------cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCC
Q 013189 159 NIRRCKYV-----KPTPVQR-----HAIPISI------GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (448)
Q Consensus 159 ~l~~~~~~-----~pt~~Q~-----~~i~~i~------~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 222 (448)
.+..+||. .||++|+ .+||.++ .++|++++++||||||++|++|+++.+...
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~------------ 269 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK------------ 269 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT------------
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC------------
Confidence 34445666 8999999 9999888 899999999999999999999999887642
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcc--------ccc
Q 013189 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA--------RVS 294 (448)
Q Consensus 223 ~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~--------~~~ 294 (448)
++++|||+||++||.|+++.++.+. +. +.... +. .++||+++++++... ...
T Consensus 270 ~~~~lilaPTr~La~Q~~~~l~~~~----i~----~~~~~-------l~-----~v~tp~~ll~~l~~~~l~~~l~~~~~ 329 (673)
T 2wv9_A 270 RLRTAVLAPTRVVAAEMAEALRGLP----VR----YLTPA-------VQ-----REHSGNEIVDVMCHATLTHRLMSPLR 329 (673)
T ss_dssp TCCEEEEESSHHHHHHHHHHTTTSC----CE----ECCC---------------CCCCSCCCEEEEEHHHHHHHHHSSSC
T ss_pred CCcEEEEccHHHHHHHHHHHHhcCC----ee----eeccc-------cc-----ccCCHHHHHHHHHhhhhHHHHhcccc
Confidence 2569999999999999999988752 22 11100 00 155666554333222 136
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeE
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ 374 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q 374 (448)
+.++++|||||||++ +..+...+..+...+. +..+|+|+||||++..+..+... ..++. .+
T Consensus 330 l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~---~~~~~vl~~SAT~~~~i~~~~~~--~~~i~-~v------------ 390 (673)
T 2wv9_A 330 VPNYNLFVMDEAHFT-DPASIAARGYIATRVE---AGEAAAIFMTATPPGTSDPFPDT--NSPVH-DV------------ 390 (673)
T ss_dssp CCCCSEEEEESTTCC-CHHHHHHHHHHHHHHH---TTSCEEEEECSSCTTCCCSSCCC--SSCEE-EE------------
T ss_pred cccceEEEEeCCccc-CccHHHHHHHHHHhcc---ccCCcEEEEcCCCChhhhhhccc--CCceE-EE------------
Confidence 899999999999998 3223233444444431 25689999999998775432221 01111 00
Q ss_pred EEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 375 RVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 375 ~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
...+.... ...++..+.. ..+++||||+++++|+.+++.|...++++..+||+ +|++++
T Consensus 391 -~~~~~~~~-~~~~l~~l~~--------~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~ 449 (673)
T 2wv9_A 391 -SSEIPDRA-WSSGFEWITD--------YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEY 449 (673)
T ss_dssp -ECCCCSSC-CSSCCHHHHS--------CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHG
T ss_pred -eeecCHHH-HHHHHHHHHh--------CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHH
Confidence 00011111 1112223322 16789999999999999999999999999999994 566554
No 62
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.93 E-value=3.6e-26 Score=236.05 Aligned_cols=229 Identities=18% Similarity=0.130 Sum_probs=165.2
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
.+|+|+|.++++.++.+++++++++||+|||++|+.++... +.++|||+|+++|+.|+++++++
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----------------~~~~Lvl~P~~~L~~Q~~~~~~~ 155 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----------------STPTLIVVPTLALAEQWKERLGI 155 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----------------CSCEEEEESSHHHHHHHHHHGGG
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----------------CCCEEEEECCHHHHHHHHHHHHh
Confidence 37999999999999999999999999999999999987752 13599999999999999999999
Q ss_pred hcccCCcE-EEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHH
Q 013189 246 FSYQTGVK-VVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 246 ~~~~~~~~-~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
| +++ +.+++|+... .++|+|+||+.|...++.. ..++++|||||||++....|.. ++..
T Consensus 156 ~----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~ 215 (472)
T 2fwr_A 156 F----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQM 215 (472)
T ss_dssp G----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHT
T ss_pred C----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHh
Confidence 5 567 7777776542 4799999999998766521 2568999999999999877753 4554
Q ss_pred cCCCCCCCceEEEEeccCCh-------------------HHHHHHHHhhcCcEEEE--eccccC----------------
Q 013189 325 MDMPPPGMRQTMLFSATFPK-------------------EIQRLASDFLANYIFLA--VGRVGS---------------- 367 (448)
Q Consensus 325 l~~~~~~~~q~i~~SAT~~~-------------------~v~~l~~~~l~~~~~i~--v~~~~~---------------- 367 (448)
+ ...++|++|||+.. .+..+...++.++.... +.....
T Consensus 216 ~-----~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 290 (472)
T 2fwr_A 216 S-----IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFL 290 (472)
T ss_dssp C-----CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCS
T ss_pred c-----CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHH
Confidence 4 24679999999862 23343333333332211 110000
Q ss_pred --------cccceeEEE---------------------EEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHH
Q 013189 368 --------STDLIVQRV---------------------EFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGAD 418 (448)
Q Consensus 368 --------~~~~i~q~~---------------------~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~ 418 (448)
....+.+.+ ..+....|...|.+++.... +.++||||++++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-------~~k~lvF~~~~~~~~ 363 (472)
T 2fwr_A 291 RARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHR-------KDKIIIFTRHNELVY 363 (472)
T ss_dssp SSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTS-------SSCBCCBCSCHHHHH
T ss_pred HhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCC-------CCcEEEEECCHHHHH
Confidence 000000000 00123446677777777632 678999999999999
Q ss_pred HHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 419 ALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 419 ~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+++.|. +..+||++++.+|++++
T Consensus 364 ~l~~~l~-----~~~~~g~~~~~~R~~~~ 387 (472)
T 2fwr_A 364 RISKVFL-----IPAITHRTSREEREEIL 387 (472)
T ss_dssp HHHHHTT-----CCBCCSSSCSHHHHTHH
T ss_pred HHHHHhC-----cceeeCCCCHHHHHHHH
Confidence 9999883 66899999999998875
No 63
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.93 E-value=3.1e-27 Score=241.84 Aligned_cols=198 Identities=18% Similarity=0.152 Sum_probs=136.6
Q ss_pred hHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEE
Q 013189 178 ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVA 257 (448)
Q Consensus 178 ~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~ 257 (448)
.+++|+|++++++||||||++|++|+++.+... ++++||++||++||.|+++.++.+. + ..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~------------~~~~lil~Ptr~La~Q~~~~l~~~~----v--~~- 64 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR------------RLRTLVLAPTRVVLSEMKEAFHGLD----V--KF- 64 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT------------TCCEEEEESSHHHHHHHHHHTTTSC----E--EE-
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc------------CCeEEEEcchHHHHHHHHHHHhcCC----e--EE-
Confidence 467899999999999999999999999877643 2569999999999999999988642 2 21
Q ss_pred ECCCCHHHHHHHHhcCCcE-EEeChhHHHHHHhccc--------ccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCC
Q 013189 258 YGGAPINQQLRELERGVDI-LVATPGRLVDLLERAR--------VSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMP 328 (448)
Q Consensus 258 ~gg~~~~~~~~~l~~~~~I-lv~TP~~L~~~l~~~~--------~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~ 328 (448)
..+ .+ .|+||+++++++..+. ..+.++++|||||||++ +.+|...+..+...+.
T Consensus 65 ~~~--------------~~~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~-- 127 (440)
T 1yks_A 65 HTQ--------------AFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRAR-- 127 (440)
T ss_dssp ESS--------------CCCCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHH--
T ss_pred ecc--------------cceeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhc--
Confidence 111 11 4889988866554332 23899999999999998 4444333333333331
Q ss_pred CCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEE
Q 013189 329 PPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTL 408 (448)
Q Consensus 329 ~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~I 408 (448)
+...|+++||||+++.+..++... .++. .....+....+ ..++..+... ++++|
T Consensus 128 -~~~~~~l~~SAT~~~~~~~~~~~~--~~~~--------------~~~~~~~~~~~-~~~~~~l~~~--------~~~~l 181 (440)
T 1yks_A 128 -ANESATILMTATPPGTSDEFPHSN--GEIE--------------DVQTDIPSEPW-NTGHDWILAD--------KRPTA 181 (440)
T ss_dssp -TTSCEEEEECSSCTTCCCSSCCCS--SCEE--------------EEECCCCSSCC-SSSCHHHHHC--------CSCEE
T ss_pred -cCCceEEEEeCCCCchhhhhhhcC--CCee--------------EeeeccChHHH-HHHHHHHHhc--------CCCEE
Confidence 356899999999987755333211 1111 00011111111 1122333322 56899
Q ss_pred EEeCchHHHHHHHHHHHHCCCCeEEecCC
Q 013189 409 VFVETKKGADALEHWLYMNGFPATTIHGD 437 (448)
Q Consensus 409 IF~~t~~~a~~l~~~L~~~g~~~~~iHg~ 437 (448)
|||++++.|+.+++.|...++++..+||+
T Consensus 182 VF~~s~~~a~~l~~~L~~~~~~v~~lhg~ 210 (440)
T 1yks_A 182 WFLPSIRAANVMAASLRKAGKSVVVLNRK 210 (440)
T ss_dssp EECSCHHHHHHHHHHHHHTTCCEEECCSS
T ss_pred EEeCCHHHHHHHHHHHHHcCCCEEEecch
Confidence 99999999999999999999999999994
No 64
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=1.6e-25 Score=206.24 Aligned_cols=170 Identities=19% Similarity=0.248 Sum_probs=123.6
Q ss_pred CCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHH-HHHH
Q 013189 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQ-IHVE 242 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q-i~~~ 242 (448)
...+|+++|.++++.++.++++++++|||+|||++|+++++..+...... ...+++||++|+++|+.| +.+.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-------~~~~~~lil~p~~~L~~q~~~~~ 102 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-------SEPGKVIVLVNKVLLVEQLFRKE 102 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-------TCCCCEEEEESSHHHHHHHHHHT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-------cCCCcEEEEECHHHHHHHHHHHH
Confidence 45589999999999999999999999999999999999999877654311 124569999999999999 7788
Q ss_pred HHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhccc------ccCCCeeEEEEecCCccCcCCCHH
Q 013189 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR------VSLQMIRYLALDEADRMLDMGFEP 316 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~------~~l~~v~~lVlDEah~ll~~gf~~ 316 (448)
++++... ++++..++|+.........+...++|+|+||++|.+++.... ..+.++++|||||||++++.++..
T Consensus 103 ~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~ 181 (216)
T 3b6e_A 103 FQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYN 181 (216)
T ss_dssp HHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHH
T ss_pred HHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHH
Confidence 8888654 678888888876655555555568999999999999987643 567889999999999998877666
Q ss_pred HHHHH-HHHc---------CCCCCCCceEEEEecc
Q 013189 317 QIRKI-VQQM---------DMPPPGMRQTMLFSAT 341 (448)
Q Consensus 317 ~i~~i-~~~l---------~~~~~~~~q~i~~SAT 341 (448)
.+... +... ........++|+||||
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 182 NIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 55332 2211 1112256789999998
No 65
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.92 E-value=1.3e-25 Score=231.18 Aligned_cols=204 Identities=16% Similarity=0.130 Sum_probs=136.7
Q ss_pred hhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEE
Q 013189 176 IPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVV 255 (448)
Q Consensus 176 i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~ 255 (448)
...+.+++++++++|||||||++|++|+++.+... ++++||++|||+||.|+++.++.+ .+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~------------~~~~lvl~Ptr~La~Q~~~~l~g~------~v~ 76 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ------------RLRTAVLAPTRVVAAEMAEALRGL------PVR 76 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT------------TCCEEEEECSHHHHHHHHHHTTTS------CEE
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC------------CCcEEEECchHHHHHHHHHHhcCc------eEe
Confidence 44566789999999999999999999999887642 256999999999999999998743 222
Q ss_pred EEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCcc-----CcCCCHHHHHHHHHHcCCCCC
Q 013189 256 VAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM-----LDMGFEPQIRKIVQQMDMPPP 330 (448)
Q Consensus 256 ~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~l-----l~~gf~~~i~~i~~~l~~~~~ 330 (448)
...+.... .-..+.-|.++|.+.+...+... ..+.++++|||||||++ +.++|...+. . .
T Consensus 77 ~~~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~----~-----~ 141 (459)
T 2z83_A 77 YQTSAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV----E-----L 141 (459)
T ss_dssp ECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH----H-----T
T ss_pred EEeccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh----c-----c
Confidence 11111100 01223457788999887766654 45899999999999983 4433322211 1 3
Q ss_pred CCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEE
Q 013189 331 GMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVF 410 (448)
Q Consensus 331 ~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF 410 (448)
...|+|+||||++..+..+... ..++..... .+. ..+...+++++... .+++|||
T Consensus 142 ~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~~--------------~~~-~~~~~~~~~~l~~~--------~~~~LVF 196 (459)
T 2z83_A 142 GEAAAIFMTATPPGTTDPFPDS--NAPIHDLQD--------------EIP-DRAWSSGYEWITEY--------AGKTVWF 196 (459)
T ss_dssp TSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC--------------CCC-SSCCSSCCHHHHHC--------CSCEEEE
T ss_pred CCccEEEEEcCCCcchhhhccC--CCCeEEecc--------------cCC-cchhHHHHHHHHhc--------CCCEEEE
Confidence 4689999999999775432221 122222110 000 11111122333332 5679999
Q ss_pred eCchHHHHHHHHHHHHCCCCeEEecCC
Q 013189 411 VETKKGADALEHWLYMNGFPATTIHGD 437 (448)
Q Consensus 411 ~~t~~~a~~l~~~L~~~g~~~~~iHg~ 437 (448)
|+|++.|+.+++.|...++++..+||+
T Consensus 197 ~~s~~~~~~l~~~L~~~g~~v~~lh~~ 223 (459)
T 2z83_A 197 VASVKMGNEIAMCLQRAGKKVIQLNRK 223 (459)
T ss_dssp CSCHHHHHHHHHHHHHTTCCEEEESTT
T ss_pred eCChHHHHHHHHHHHhcCCcEEecCHH
Confidence 999999999999999999999999996
No 66
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.91 E-value=2.8e-24 Score=219.42 Aligned_cols=204 Identities=15% Similarity=0.110 Sum_probs=136.5
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECC
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGG 260 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg 260 (448)
+++|+++++|||||||++|++|+++.+... ++++|||+||++||.|+++.++. +.+....++
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~------------g~~~lvl~Pt~~La~Q~~~~~~~------~~v~~~~~~ 62 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK------------RLRTVILAPTRVVASEMYEALRG------EPIRYMTPA 62 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT------------TCCEEEEESSHHHHHHHHHHTTT------SCEEEC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC------------CCCEEEECcHHHHHHHHHHHhCC------CeEEEEecC
Confidence 478999999999999999999999776543 24699999999999999988762 344444443
Q ss_pred CCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEec
Q 013189 261 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 261 ~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
... .-..+.-+.+.|.+.+...+.. ...+.++++|||||||++ ..++..++..+..... +...|+|+|||
T Consensus 63 ~~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~---~~~~~~l~~SA 132 (431)
T 2v6i_A 63 VQS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVS---MGDAGAIFMTA 132 (431)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH---TTSCEEEEEES
T ss_pred ccc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhh---CCCCcEEEEeC
Confidence 211 1122346777899988776665 456899999999999997 4334444444444431 34689999999
Q ss_pred cCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHH
Q 013189 341 TFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADAL 420 (448)
Q Consensus 341 T~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l 420 (448)
|+++.+..+... ..++. .+. ..+. ..+...+++++... .+++||||+++++|+.+
T Consensus 133 T~~~~~~~~~~~--~~~i~-~~~-------------~~~~-~~~~~~~~~~l~~~--------~~~~lVF~~~~~~~~~l 187 (431)
T 2v6i_A 133 TPPGTTEAFPPS--NSPII-DEE-------------TRIP-DKAWNSGYEWITEF--------DGRTVWFVHSIKQGAEI 187 (431)
T ss_dssp SCTTCCCSSCCC--SSCCE-EEE-------------CCCC-SSCCSSCCHHHHSC--------SSCEEEECSSHHHHHHH
T ss_pred CCCcchhhhcCC--CCcee-ecc-------------ccCC-HHHHHHHHHHHHcC--------CCCEEEEeCCHHHHHHH
Confidence 999754322111 01111 100 0011 11122233344332 45799999999999999
Q ss_pred HHHHHHCCCCeEEecCC
Q 013189 421 EHWLYMNGFPATTIHGD 437 (448)
Q Consensus 421 ~~~L~~~g~~~~~iHg~ 437 (448)
++.|...++++..+||+
T Consensus 188 ~~~L~~~~~~v~~lhg~ 204 (431)
T 2v6i_A 188 GTCLQKAGKKVLYLNRK 204 (431)
T ss_dssp HHHHHHTTCCEEEESTT
T ss_pred HHHHHHcCCeEEEeCCc
Confidence 99999999999999997
No 67
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.91 E-value=1.8e-24 Score=202.91 Aligned_cols=182 Identities=16% Similarity=0.153 Sum_probs=132.1
Q ss_pred HHHHHHHHHCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcH
Q 013189 154 EALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR 233 (448)
Q Consensus 154 ~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 233 (448)
+.+.+.+.......++++|.++++.+..|++++++|+||||||++|.++++..+..... ...+++||++|++
T Consensus 48 ~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~--------~~~~~~l~~~p~~ 119 (235)
T 3llm_A 48 HDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR--------AAECNIVVTQPRR 119 (235)
T ss_dssp HHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC--------GGGCEEEEEESSH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC--------CCceEEEEeccch
Confidence 33333333333445789999999999999999999999999999999999887765431 2346799999999
Q ss_pred HHHHHHHHHHHHhcc-cCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCcc-Cc
Q 013189 234 ELSSQIHVEAKKFSY-QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM-LD 311 (448)
Q Consensus 234 eLa~qi~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~l-l~ 311 (448)
+|+.|+++.+.+... ..+..+........ ......++|+|+|||+|++++.. .+.++++|||||||++ ++
T Consensus 120 ~la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~ 191 (235)
T 3llm_A 120 ISAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDIN 191 (235)
T ss_dssp HHHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHH
T ss_pred HHHHHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcc
Confidence 999999998876532 22333332221110 00113478999999999999876 4899999999999997 77
Q ss_pred CCCH-HHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcE
Q 013189 312 MGFE-PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYI 358 (448)
Q Consensus 312 ~gf~-~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~ 358 (448)
++|. ..++.++... .++|+++||||++.+. +.+.|...++
T Consensus 192 ~~~~~~~l~~i~~~~-----~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 192 TDFLLVVLRDVVQAY-----PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHHHHHHC-----TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred hHHHHHHHHHHHhhC-----CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 7776 4566666554 3689999999999886 5554444443
No 68
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=3e-23 Score=220.43 Aligned_cols=131 Identities=19% Similarity=0.148 Sum_probs=114.3
Q ss_pred HCCCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013189 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~ 241 (448)
-+|+ +|+++|..++|.++.|+ +++++||+|||++|.+|++...+. +..++||+||++||.|+++
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~-------------G~qv~VvTPTreLA~Qdae 138 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT-------------GKGVHVVTVNDYLARRDAE 138 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT-------------CSCCEEEESSHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh-------------CCCEEEEeCCHHHHHHHHH
Confidence 4688 99999999999999998 999999999999999999654432 1349999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHH-HHHHhccc------ccCC---CeeEEEEecCCccC
Q 013189 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQ---MIRYLALDEADRML 310 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L-~~~l~~~~------~~l~---~v~~lVlDEah~ll 310 (448)
.+..+....++++.+++||.+. +.+....++||+|+||++| +|+|..+. +.+. .+.++||||+|.||
T Consensus 139 ~m~~l~~~lGLsv~~i~Gg~~~--~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 139 WMGPVYRGLGLSVGVIQHASTP--AERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHHHHHTTTCCEEECCTTCCH--HHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHHHHHhcCCeEEEEeCCCCH--HHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9999999999999999999884 3445556799999999999 89887652 4577 89999999999987
No 69
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.91 E-value=3.3e-24 Score=227.50 Aligned_cols=255 Identities=17% Similarity=0.153 Sum_probs=138.4
Q ss_pred CCCHHHHhHhhhHhc----C-CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH-
Q 013189 167 KPTPVQRHAIPISIG----G-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH- 240 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~----g-~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~- 240 (448)
.|+|+|.++|+.++. + ++++++++||+|||++++ +++..++...... ......+++|||+||++|+.|++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~-~~~~~l~~~~~~~---~~~~~~~~vlil~P~~~L~~Q~~~ 253 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAF-QISWKLWSARWNR---TGDYRKPRILFLADRNVLVDDPKD 253 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHHHHTTCCS---SCSSSCCCEEEEEC----------
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHH-HHHHHHHhccccc---ccccCCCeEEEEeCCHHHHHHHHH
Confidence 699999999998775 4 569999999999999964 4555555432110 01123567999999999999999
Q ss_pred HHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhc----ccccCCCeeEEEEecCCccCcCCCHH
Q 013189 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER----ARVSLQMIRYLALDEADRMLDMGFEP 316 (448)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~----~~~~l~~v~~lVlDEah~ll~~gf~~ 316 (448)
+.++.|.. .+..+.++ ......+|+|+||++|...+.. ..+....+++|||||||++.... ..
T Consensus 254 ~~~~~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~ 320 (590)
T 3h1t_A 254 KTFTPFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NS 320 (590)
T ss_dssp -CCTTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------
T ss_pred HHHHhcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hH
Confidence 77777642 33333332 1234589999999999887652 33456789999999999997643 25
Q ss_pred HHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEE------------------EEeccccCccc--------
Q 013189 317 QIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIF------------------LAVGRVGSSTD-------- 370 (448)
Q Consensus 317 ~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~------------------i~v~~~~~~~~-------- 370 (448)
.+..++..+ + ..++|+||||.......-...++..++. +.+.. .....
T Consensus 321 ~~~~il~~~----~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~-~~~~~~~~~~~~~ 394 (590)
T 3h1t_A 321 NWREILEYF----E-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVIS-EVDAAGWRPSKGD 394 (590)
T ss_dssp -CHHHHHHS----T-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEE-TTCC---------
T ss_pred HHHHHHHhC----C-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeee-eeecccccccccc
Confidence 667788877 2 3579999999764332222222222221 11110 00000
Q ss_pred ------ceeEEEEEecc-------cchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCC--------
Q 013189 371 ------LIVQRVEFVHE-------SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGF-------- 429 (448)
Q Consensus 371 ------~i~q~~~~~~~-------~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~-------- 429 (448)
.+......... ..+...+.+.+....... ....++||||+++++|+.+++.|...+.
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~--~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~ 472 (590)
T 3h1t_A 395 VDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRT--DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPD 472 (590)
T ss_dssp --------------CCSHHHHHHHHHTHHHHHHHHHHHHHHH--CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTT
T ss_pred ccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc--CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCC
Confidence 00000000000 112223333332221110 1257899999999999999999987543
Q ss_pred CeEEecCCCCHHHHHHHh
Q 013189 430 PATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 430 ~~~~iHg~~~q~eR~~~l 447 (448)
.+..+||++++ +|+++|
T Consensus 473 ~~~~i~g~~~~-~r~~~l 489 (590)
T 3h1t_A 473 YVARVTSEEGK-IGKGHL 489 (590)
T ss_dssp SEEECSSTTHH-HHHHHH
T ss_pred eEEEEeCCChH-HHHHHH
Confidence 27889999875 677664
No 70
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.90 E-value=1.5e-23 Score=223.59 Aligned_cols=221 Identities=11% Similarity=0.066 Sum_probs=150.4
Q ss_pred HHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhccc
Q 013189 170 PVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQ 249 (448)
Q Consensus 170 ~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~ 249 (448)
|.|.+.....+.++|++++||||||||+ +++..+... ..+||++|||+||.|+++.++++
T Consensus 143 p~~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~-------------~~gl~l~PtR~LA~Qi~~~l~~~--- 202 (677)
T 3rc3_A 143 PPNWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA-------------KSGVYCGPLKLLAHEIFEKSNAA--- 202 (677)
T ss_dssp GGGGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS-------------SSEEEEESSHHHHHHHHHHHHHT---
T ss_pred hhhhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc-------------CCeEEEeCHHHHHHHHHHHHHhc---
Confidence 3444445556789999999999999998 455555432 12699999999999999999885
Q ss_pred CCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCC
Q 013189 250 TGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPP 329 (448)
Q Consensus 250 ~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~ 329 (448)
++++.+++|+..... ..-.+..+++++|++.+. ....+++|||||||+|++.+|...+..++..+.
T Consensus 203 -g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~--- 268 (677)
T 3rc3_A 203 -GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC--- 268 (677)
T ss_dssp -TCCEEEECSSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC---
T ss_pred -CCcEEEEECCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccC---
Confidence 677888888754300 000011345555554321 247789999999999999999999999999882
Q ss_pred CCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEE
Q 013189 330 PGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLV 409 (448)
Q Consensus 330 ~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~II 409 (448)
....|++++|||. +.+..++... ...+.+..... .... ...... +..+... ....||
T Consensus 269 ~~~i~il~~SAT~-~~i~~l~~~~-~~~~~v~~~~r---~~~l----~~~~~~------l~~l~~~--------~~g~iI 325 (677)
T 3rc3_A 269 AEEVHLCGEPAAI-DLVMELMYTT-GEEVEVRDYKR---LTPI----SVLDHA------LESLDNL--------RPGDCI 325 (677)
T ss_dssp EEEEEEEECGGGH-HHHHHHHHHH-TCCEEEEECCC---SSCE----EECSSC------CCSGGGC--------CTTEEE
T ss_pred ccceEEEeccchH-HHHHHHHHhc-CCceEEEEeee---cchH----HHHHHH------HHHHHhc--------CCCCEE
Confidence 2678999999994 3455555443 22322211100 0000 001000 0001111 233699
Q ss_pred EeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 410 FVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 410 F~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
||+|+++++.+++.|...++.|..+||+|++++|++++
T Consensus 326 f~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~ 363 (677)
T 3rc3_A 326 VCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQA 363 (677)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHH
Confidence 99999999999999999999999999999999998875
No 71
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=7.3e-23 Score=197.17 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=125.2
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
.+|+++|.++++.++.+++.+++++||+|||+++++++...+... ..++|||+||++|+.|+++++++
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~------------~~~~lil~Pt~~L~~q~~~~l~~ 179 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY------------EGKILIIVPTTALTTQMADDFVD 179 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC------------SSEEEEECSSHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC------------CCeEEEEECCHHHHHHHHHHHHH
Confidence 379999999999998888899999999999999988877655321 13699999999999999999999
Q ss_pred hcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+.......+..+++|..... ......+|+|+||+.|... ....+..+++|||||||++.. +.+..++..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~ 249 (282)
T 1rif_A 180 YRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGL 249 (282)
T ss_dssp HTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTC
T ss_pred hcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHh
Confidence 97766778888888865432 1123589999999987543 223467899999999999975 5777777776
Q ss_pred CCCCCCCceEEEEeccCChHHHH
Q 013189 326 DMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 326 ~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
...+++++||||++.....
T Consensus 250 ----~~~~~~l~lSATp~~~~~~ 268 (282)
T 1rif_A 250 ----NNCMFKFGLSGSLRDGKAN 268 (282)
T ss_dssp ----TTCCEEEEECSSCCTTSTT
T ss_pred ----hcCCeEEEEeCCCCCcchH
Confidence 4578999999999765433
No 72
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.86 E-value=1.4e-20 Score=195.47 Aligned_cols=246 Identities=14% Similarity=0.159 Sum_probs=162.5
Q ss_pred CCCHHHHhHhhhH----hcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013189 167 KPTPVQRHAIPIS----IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 167 ~pt~~Q~~~i~~i----~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~ 242 (448)
+|+|+|.+++..+ ..+++++++.+||+|||++++. ++..+.... ...++|||||+ .|+.|+.++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~~----------~~~~~LIv~P~-~l~~qw~~e 104 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKEN----------ELTPSLVICPL-SVLKNWEEE 104 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHTT----------CCSSEEEEECS-TTHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhcC----------CCCCEEEEccH-HHHHHHHHH
Confidence 6999999999876 3578999999999999999654 444444321 12359999995 689999999
Q ss_pred HHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHH
Q 013189 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~ 322 (448)
++++.. ..++.+++|+... ......+|+|+|++.|..... +....+++||+||||++..... .....+
T Consensus 105 ~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~~~~~l 172 (500)
T 1z63_A 105 LSKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--KIFKAV 172 (500)
T ss_dssp HHHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--HHHHHH
T ss_pred HHHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--HHHHHH
Confidence 999864 4566666665421 112347999999999865443 3455789999999999976542 344555
Q ss_pred HHcCCCCCCCceEEEEeccCCh----HHHHHHH---------------------------------HhhcCcEEEEeccc
Q 013189 323 QQMDMPPPGMRQTMLFSATFPK----EIQRLAS---------------------------------DFLANYIFLAVGRV 365 (448)
Q Consensus 323 ~~l~~~~~~~~q~i~~SAT~~~----~v~~l~~---------------------------------~~l~~~~~i~v~~~ 365 (448)
..+ + ..+.+++|||... ++..++. .++. ++.+.....
T Consensus 173 ~~l----~-~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~-~~~lrr~k~ 246 (500)
T 1z63_A 173 KEL----K-SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIIS-PFILRRTKY 246 (500)
T ss_dssp HTS----C-EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHT-TTEECCCTT
T ss_pred Hhh----c-cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHh-hHeeeeccc
Confidence 555 2 2467999999732 1111111 1111 111111110
Q ss_pred ----cCcccceeEEEEEec---------------------------------------------------------ccch
Q 013189 366 ----GSSTDLIVQRVEFVH---------------------------------------------------------ESDK 384 (448)
Q Consensus 366 ----~~~~~~i~q~~~~~~---------------------------------------------------------~~~k 384 (448)
....+........++ ...|
T Consensus 247 ~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K 326 (500)
T 1z63_A 247 DKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGK 326 (500)
T ss_dssp CHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHH
T ss_pred ccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchh
Confidence 011112222222222 1234
Q ss_pred HHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC-CCCeEEecCCCCHHHHHHHh
Q 013189 385 RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN-GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 385 ~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~-g~~~~~iHg~~~q~eR~~~l 447 (448)
...+.+++..... .+.++||||+++..++.+++.|... |+.+..+||++++.+|++++
T Consensus 327 ~~~l~~~l~~~~~-----~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~ 385 (500)
T 1z63_A 327 MIRTMEIIEEALD-----EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDII 385 (500)
T ss_dssp HHHHHHHHHHHHT-----TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHc-----cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHH
Confidence 4455555655432 2678999999999999999999885 99999999999999999876
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.85 E-value=1.6e-20 Score=208.22 Aligned_cols=166 Identities=17% Similarity=0.120 Sum_probs=122.8
Q ss_pred HHHHHHHHHCC-------CCCCCHHHHhHhhhHhc--------------CCCeeEeccCCCCcchhhhhhHHHHHhhhhc
Q 013189 154 EALNLNIRRCK-------YVKPTPVQRHAIPISIG--------------GRDLMACAQTGSGKTAAFCFPIISGIMREQY 212 (448)
Q Consensus 154 ~~l~~~l~~~~-------~~~pt~~Q~~~i~~i~~--------------g~d~li~a~TGsGKT~~~~lpil~~l~~~~~ 212 (448)
+.+++.+..+- ...|+|+|.+|++.++. +++.+++++||||||+++ ++++..+...
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-- 327 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-- 327 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--
Confidence 44555555542 23499999999998765 368999999999999997 6666443211
Q ss_pred ccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh-cCCcEEEeChhHHHHHHhcc
Q 013189 213 VQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE-RGVDILVATPGRLVDLLERA 291 (448)
Q Consensus 213 ~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Ilv~TP~~L~~~l~~~ 291 (448)
...+++|||+|+++|+.|+.+.+++|... .+.++.+.......+. .+++|+|+||++|..++...
T Consensus 328 --------~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~ 393 (1038)
T 2w00_A 328 --------DFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAE 393 (1038)
T ss_dssp --------TTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHC
T ss_pred --------CCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcc
Confidence 12357999999999999999999998643 1245556666666664 46899999999999988653
Q ss_pred c--ccCCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCCh
Q 013189 292 R--VSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 292 ~--~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~ 344 (448)
. ..+....+||+||||++.. ...+..|...+ + ..++++||||+..
T Consensus 394 ~~~~~~~~~~lvIiDEAHrs~~---~~~~~~I~~~~----p-~a~~lgfTATP~~ 440 (1038)
T 2w00_A 394 SDLPVYNQQVVFIFDECHRSQF---GEAQKNLKKKF----K-RYYQFGFTGTPIF 440 (1038)
T ss_dssp CCCGGGGSCEEEEEESCCTTHH---HHHHHHHHHHC----S-SEEEEEEESSCCC
T ss_pred cchhccccccEEEEEccchhcc---hHHHHHHHHhC----C-cccEEEEeCCccc
Confidence 2 2356789999999999764 33456677776 3 3789999999864
No 74
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.82 E-value=2.1e-20 Score=208.05 Aligned_cols=158 Identities=14% Similarity=0.099 Sum_probs=104.3
Q ss_pred CCCCHHHHhHhhhHhc--CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIG--GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~--g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~ 243 (448)
.+|+|+|.+++..++. +..++++.+||+|||++++..+...+.... ..++|||||+ .|+.|+.+++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-----------~~rvLIVvP~-sLl~Qw~~E~ 219 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA-----------AERVLIIVPE-TLQHQWLVEM 219 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-----------CCCEEEECCT-TTHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-----------CCeEEEEeCH-HHHHHHHHHH
Confidence 3689999999988775 457999999999999998776655443221 1259999999 9999999999
Q ss_pred HHhcccCCcEEEEEECCCCHHHHHHH---HhcCCcEEEeChhHHHHHHhc-ccccCCCeeEEEEecCCccCcCCCH-HHH
Q 013189 244 KKFSYQTGVKVVVAYGGAPINQQLRE---LERGVDILVATPGRLVDLLER-ARVSLQMIRYLALDEADRMLDMGFE-PQI 318 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~~~~Ilv~TP~~L~~~l~~-~~~~l~~v~~lVlDEah~ll~~gf~-~~i 318 (448)
.+.. ++++.++.++.. ...... .....+|+|+|++.|...... ..+....+++|||||||++...+.. ...
T Consensus 220 ~~~f---~l~v~v~~~~~~-~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~ 295 (968)
T 3dmq_A 220 LRRF---NLRFALFDDERY-AEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE 295 (968)
T ss_dssp HHHS---CCCCEECCHHHH-HHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHH
T ss_pred HHHh---CCCEEEEccchh-hhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHH
Confidence 6643 455555443321 111111 011469999999988643221 1234567899999999999754421 111
Q ss_pred HHHHHHcCCCCCCCceEEEEeccC
Q 013189 319 RKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 319 ~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
..++..+. ....+++++|||.
T Consensus 296 ~~~l~~L~---~~~~~~L~LTATP 316 (968)
T 3dmq_A 296 YQAIEQLA---EHVPGVLLLTATP 316 (968)
T ss_dssp HHHHHHHH---TTCSSEEESCSSC
T ss_pred HHHHHHHh---hcCCcEEEEEcCC
Confidence 23333331 2234589999997
No 75
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.80 E-value=5.6e-19 Score=165.66 Aligned_cols=139 Identities=22% Similarity=0.147 Sum_probs=110.1
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
.+|+++|.+++..++.+++++++++||+|||.+++.++... ..++||++|+++|+.|+.+.+++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----------------~~~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----------------STPTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----------------CSCEEEEESSHHHHHHHHHHHGG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----------------CCCEEEEeCCHHHHHHHHHHHHh
Confidence 47999999999999998899999999999999988876642 13599999999999999999998
Q ss_pred hcccCCcE-EEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHH
Q 013189 246 FSYQTGVK-VVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 246 ~~~~~~~~-~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
| +++ +..+.|+.. ...+|+|+|++.+...+... ...+++|||||||++.+..| ..++..
T Consensus 156 ~----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~----~~i~~~ 215 (237)
T 2fz4_A 156 F----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESY----VQIAQM 215 (237)
T ss_dssp G----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTH----HHHHHT
T ss_pred C----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHH----HHHHHh
Confidence 4 566 666666653 24799999999987766521 35689999999999987554 445555
Q ss_pred cCCCCCCCceEEEEeccCChH
Q 013189 325 MDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 325 l~~~~~~~~q~i~~SAT~~~~ 345 (448)
+ + ..++|+||||++..
T Consensus 216 ~----~-~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 216 S----I-APFRLGLTATFERE 231 (237)
T ss_dssp C----C-CSEEEEEEESCC--
T ss_pred c----c-CCEEEEEecCCCCC
Confidence 5 2 46789999998653
No 76
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=5.3e-18 Score=185.70 Aligned_cols=255 Identities=18% Similarity=0.196 Sum_probs=166.6
Q ss_pred CCCCHHHHhHhhhHh----cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~ 241 (448)
.+++|+|.+++..+. .+++.|++.+||+|||+..+..+...+.... ....+||||| ..|+.|..+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~----------~~~~~LIV~P-~sll~qW~~ 303 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR----------QNGPHIIVVP-LSTMPAWLD 303 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS----------CCSCEEEECC-TTTHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC----------CCCCEEEEEC-chHHHHHHH
Confidence 368999999998665 7889999999999999987655543332221 1123899999 778899999
Q ss_pred HHHHhcccCCcEEEEEECCCCHHHHHHHHh------------cCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCcc
Q 013189 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELE------------RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~------------~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~l 309 (448)
++.+++ ..+++.+++|+.......+... ..++|+|+|++.+...... +....+++|||||||++
T Consensus 304 E~~~~~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 304 TFEKWA--PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp HHHHHS--TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGG
T ss_pred HHHHHC--CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhh
Confidence 999986 3567777666655444443322 2478999999999765432 22346889999999999
Q ss_pred CcCCCHHHHHHHHHHcCCCCCCCceEEEEeccC----ChHHHHHHHHhhcC-----------------------------
Q 013189 310 LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF----PKEIQRLASDFLAN----------------------------- 356 (448)
Q Consensus 310 l~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~----~~~v~~l~~~~l~~----------------------------- 356 (448)
-... ..+...+..+ . ....+++|||. ..++..++......
T Consensus 380 kn~~--s~~~~~l~~l----~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 452 (800)
T 3mwy_W 380 KNAE--SSLYESLNSF----K-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQ 452 (800)
T ss_dssp CCSS--SHHHHHHTTS----E-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTG
T ss_pred cCch--hHHHHHHHHh----h-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHh
Confidence 6533 3444455444 2 23468899997 23333333221111
Q ss_pred cEEEEeccc--cCcccceeEEEEEec------------------------------------------------------
Q 013189 357 YIFLAVGRV--GSSTDLIVQRVEFVH------------------------------------------------------ 380 (448)
Q Consensus 357 ~~~i~v~~~--~~~~~~i~q~~~~~~------------------------------------------------------ 380 (448)
++.+.-... ....+.....+..+.
T Consensus 453 p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~ 532 (800)
T 3mwy_W 453 PFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEER 532 (800)
T ss_dssp GGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHH
T ss_pred HHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHH
Confidence 111110000 001111111222221
Q ss_pred ---------------------ccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCC
Q 013189 381 ---------------------ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRT 439 (448)
Q Consensus 381 ---------------------~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~ 439 (448)
...|...|.++|..... .+.++||||+....++.|+++|...|+++..|||.++
T Consensus 533 ~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~-----~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~ 607 (800)
T 3mwy_W 533 VLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKK-----DGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVP 607 (800)
T ss_dssp HCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTT-----TTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSC
T ss_pred HHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhh-----CCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 12344555556655432 2678999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 013189 440 QQRTSIEI 447 (448)
Q Consensus 440 q~eR~~~l 447 (448)
+.+|.++|
T Consensus 608 ~~eR~~~i 615 (800)
T 3mwy_W 608 SAQRRISI 615 (800)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
No 77
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.78 E-value=3e-17 Score=175.46 Aligned_cols=159 Identities=18% Similarity=0.163 Sum_probs=108.9
Q ss_pred CCCHHHHhHhhhHh---------cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHH
Q 013189 167 KPTPVQRHAIPISI---------GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSS 237 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~---------~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~ 237 (448)
.++|+|.+++..+. .++..|+..+||+|||+..+..+...+ ..... ......++|||||+ .|+.
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~-~~~~~-----~~p~~~~~LiV~P~-sll~ 127 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLL-KQSPD-----CKPEIDKVIVVSPS-SLVR 127 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHH-HCCTT-----SSCSCSCEEEEECH-HHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHH-HhCcc-----ccCCCCcEEEEecH-HHHH
Confidence 68999999998763 456799999999999999766555433 22211 11122358999997 8899
Q ss_pred HHHHHHHHhcccCCcEEEEEECCCCHHHH--HHHHhc------CCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCcc
Q 013189 238 QIHVEAKKFSYQTGVKVVVAYGGAPINQQ--LRELER------GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (448)
Q Consensus 238 qi~~~~~~~~~~~~~~~~~~~gg~~~~~~--~~~l~~------~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~l 309 (448)
|..++++++... .+.++.+++|...... ...... ..+|+|+|++.+..... .+....+++||+||||++
T Consensus 128 qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 128 NWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGC
T ss_pred HHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceec
Confidence 999999998754 4666676776543211 111111 37899999999876543 333457889999999998
Q ss_pred CcCCCHHHHHHHHHHcCCCCCCCceEEEEeccC
Q 013189 310 LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 310 l~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
-... ......+..+ .. ...+++|||.
T Consensus 205 kn~~--~~~~~al~~l----~~-~~rl~LTgTP 230 (644)
T 1z3i_X 205 KNSD--NQTYLALNSM----NA-QRRVLISGTP 230 (644)
T ss_dssp CTTC--HHHHHHHHHH----CC-SEEEEECSSC
T ss_pred CChh--hHHHHHHHhc----cc-CcEEEEecCc
Confidence 6543 3444555556 22 3579999996
No 78
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.77 E-value=4.6e-17 Score=170.50 Aligned_cols=253 Identities=16% Similarity=0.131 Sum_probs=177.5
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
..|.++|.-....+..|+ |+.+.||+|||+++.+|++-..+. +..+.||+|++.||.|-++.+..
T Consensus 74 ~r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~-------------G~~vhVvT~ndyLA~rdae~m~~ 138 (822)
T 3jux_A 74 MRPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI-------------GKGVHLVTVNDYLARRDALWMGP 138 (822)
T ss_dssp CCCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT-------------SSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc-------------CCceEEEeccHHHHHhHHHHHHH
Confidence 469999999988888887 999999999999999999855543 23499999999999999999999
Q ss_pred hcccCCcEEEEEECC--------------------------------------------------CCHHHHHHHHhcCCc
Q 013189 246 FSYQTGVKVVVAYGG--------------------------------------------------APINQQLRELERGVD 275 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg--------------------------------------------------~~~~~~~~~l~~~~~ 275 (448)
+....|+++.+++.. .+..+ +.-.-.||
T Consensus 139 l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e--rr~aY~~D 216 (822)
T 3jux_A 139 VYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT--RKEAYLCD 216 (822)
T ss_dssp HHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC--HHHHHHSS
T ss_pred HHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH--HHHHhcCC
Confidence 999999999998872 11111 11122489
Q ss_pred EEEeChhHH-HHHHhcc-c-----ccCCCeeEEEEecCCccC-cC--------C-------CHHHHHHHHHHcCC-----
Q 013189 276 ILVATPGRL-VDLLERA-R-----VSLQMIRYLALDEADRML-DM--------G-------FEPQIRKIVQQMDM----- 327 (448)
Q Consensus 276 Ilv~TP~~L-~~~l~~~-~-----~~l~~v~~lVlDEah~ll-~~--------g-------f~~~i~~i~~~l~~----- 327 (448)
|+++|..-| .|+|..+ . .-.....|.||||+|.+| |. | ....+..++..+..
T Consensus 217 ItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~ 296 (822)
T 3jux_A 217 VTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFT 296 (822)
T ss_dssp EEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEE
T ss_pred CEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEE
Confidence 999999887 4565432 1 124668899999999653 11 0 01111111111100
Q ss_pred ---------------------------CC---------------------------------------------------
Q 013189 328 ---------------------------PP--------------------------------------------------- 329 (448)
Q Consensus 328 ---------------------------~~--------------------------------------------------- 329 (448)
..
T Consensus 297 vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~ 376 (822)
T 3jux_A 297 VDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSG 376 (822)
T ss_dssp ECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGG
T ss_pred EEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCch
Confidence 00
Q ss_pred ------------------------------CCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeE-EEEE
Q 013189 330 ------------------------------PGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ-RVEF 378 (448)
Q Consensus 330 ------------------------------~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q-~~~~ 378 (448)
..-.++.+||+|+..+...+...|--+ .+.+ ....+...+.+ .+.+
T Consensus 377 GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~I-Ptnkp~~R~d~~d~vy 453 (822)
T 3jux_A 377 GLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVI-PTHKPMIRKDHDDLVF 453 (822)
T ss_dssp GHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEEC-CCSSCCCCEECCCEEE
T ss_pred HHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEE-CCCCCcceeecCcEEE
Confidence 000468999999988887776666433 2222 22233333333 3566
Q ss_pred ecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHH
Q 013189 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRT 443 (448)
Q Consensus 379 ~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR 443 (448)
....+|...+.+.+...... +.++||||+|++.|+.|+..|...|+++..+||+..+.||
T Consensus 454 ~t~~eK~~al~~~I~~~~~~-----gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~ 513 (822)
T 3jux_A 454 RTQKEKYEKIVEEIEKRYKK-----GQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEA 513 (822)
T ss_dssp SSHHHHHHHHHHHHHHHHHH-----TCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHhhC-----CCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHH
Confidence 77788999999988765322 6789999999999999999999999999999999544444
No 79
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.67 E-value=1.2e-16 Score=167.77 Aligned_cols=129 Identities=16% Similarity=0.035 Sum_probs=102.6
Q ss_pred CCCHHHHhHhhh----HhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013189 167 KPTPVQRHAIPI----SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 167 ~pt~~Q~~~i~~----i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~ 242 (448)
.|+|.|.+++.. +..++|+++.||||+|||++|++|++.. .+++||++||++|+.|+.++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~----------------~~~v~i~~pt~~l~~q~~~~ 66 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV----------------KPKVLFVVRTHNEFYPIYRD 66 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH----------------CSEEEEEESSGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC----------------CCeEEEEcCCHHHHHHHHHH
Confidence 689999997764 4578999999999999999999999961 25699999999999999999
Q ss_pred HHHhcccCCcEEEEEECCCCH---------------------------------HHHH------------------HHHh
Q 013189 243 AKKFSYQTGVKVVVAYGGAPI---------------------------------NQQL------------------RELE 271 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~---------------------------------~~~~------------------~~l~ 271 (448)
++++....++++.++.|..+. .... +...
T Consensus 67 ~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~ 146 (551)
T 3crv_A 67 LTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL 146 (551)
T ss_dssp HTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh
Confidence 999987778888887763211 1111 3334
Q ss_pred cCCcEEEeChhHHHHHHhcccccC-CCeeEEEEecCCccCc
Q 013189 272 RGVDILVATPGRLVDLLERARVSL-QMIRYLALDEADRMLD 311 (448)
Q Consensus 272 ~~~~Ilv~TP~~L~~~l~~~~~~l-~~v~~lVlDEah~ll~ 311 (448)
..+||||+|++.|++...+..+.+ ....+|||||||.|.+
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 568999999999998865443333 4678999999999877
No 80
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.60 E-value=1.4e-14 Score=154.97 Aligned_cols=103 Identities=20% Similarity=0.142 Sum_probs=69.1
Q ss_pred CceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEe
Q 013189 332 MRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFV 411 (448)
Q Consensus 332 ~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~ 411 (448)
..|+++||||++...... ....+...+........ .+.......+...|+..|...... +.++||||
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p----~i~v~~~~~~~~~Ll~~l~~~~~~-----~~~vlVf~ 446 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLLDP----LVRVKPTENQILDLMEGIRERAAR-----GERTLVTV 446 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCCCC----EEEEECSTTHHHHHHHHHHHHHHT-----TCEEEEEC
T ss_pred cCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCCCC----eEEEecccchHHHHHHHHHHHHhc-----CCEEEEEE
Confidence 579999999998654221 11111111111111111 122233445566666666554322 66899999
Q ss_pred CchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 412 ETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 412 ~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+|+..|+.|+++|...|++|..+||++++.+|.+++
T Consensus 447 ~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~ 482 (664)
T 1c4o_A 447 LTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALI 482 (664)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHH
Confidence 999999999999999999999999999999999875
No 81
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.55 E-value=3.5e-15 Score=156.30 Aligned_cols=127 Identities=23% Similarity=0.165 Sum_probs=87.9
Q ss_pred CCCCCCCHHHHhHhhh----HhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHH
Q 013189 163 CKYVKPTPVQRHAIPI----SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQ 238 (448)
Q Consensus 163 ~~~~~pt~~Q~~~i~~----i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q 238 (448)
.+| .|+|+|.+++.. +..++++++.||||+|||++|++|++.. .+++||++||++|+.|
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~----------------~~~~~~~~~t~~l~~q 66 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL----------------KKKVLIFTRTHSQLDS 66 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----------------TCEEEEEESCHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC----------------CCcEEEEcCCHHHHHH
Confidence 366 899999998654 4578999999999999999999998752 2469999999999999
Q ss_pred HHHHHHHhcccCCcEEEEEECCCCH--------H---------------------------------------HHHHHHh
Q 013189 239 IHVEAKKFSYQTGVKVVVAYGGAPI--------N---------------------------------------QQLRELE 271 (448)
Q Consensus 239 i~~~~~~~~~~~~~~~~~~~gg~~~--------~---------------------------------------~~~~~l~ 271 (448)
+.+++.++ ++++..+.|.... . ...+...
T Consensus 67 ~~~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~ 142 (540)
T 2vl7_A 67 IYKNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANL 142 (540)
T ss_dssp HHHHHGGG----TCCEEEC---------------------------------------------------------CTTG
T ss_pred HHHHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHh
Confidence 99999885 3344433322110 0 0001112
Q ss_pred cCCcEEEeChhHHHHHHhcccc-------cCCCeeEEEEecCCccC
Q 013189 272 RGVDILVATPGRLVDLLERARV-------SLQMIRYLALDEADRML 310 (448)
Q Consensus 272 ~~~~Ilv~TP~~L~~~l~~~~~-------~l~~v~~lVlDEah~ll 310 (448)
..+||||+|+..|++.+....+ .+....+|||||||.|.
T Consensus 143 ~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 143 KDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp GGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred hcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 3579999999999886544332 24667899999999984
No 82
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.42 E-value=7.5e-14 Score=149.29 Aligned_cols=257 Identities=18% Similarity=0.177 Sum_probs=151.0
Q ss_pred HHHHHHHHHCCCCCCCHHHHhH-----------hhhH---------hcCC--CeeEeccCCCCcchh-----hhhhHHHH
Q 013189 154 EALNLNIRRCKYVKPTPVQRHA-----------IPIS---------IGGR--DLMACAQTGSGKTAA-----FCFPIISG 206 (448)
Q Consensus 154 ~~l~~~l~~~~~~~pt~~Q~~~-----------i~~i---------~~g~--d~li~a~TGsGKT~~-----~~lpil~~ 206 (448)
+.|.+.|..+||.....++... +|.- +-|. |-|-.-.+.||||+. +++|+.+.
T Consensus 170 ~~l~~~L~~~GY~r~~~V~~~GefavRG~iiDIfp~~~~~~p~RiefFgDeIesIr~FD~~Tqrs~~~~~~v~i~Pa~e~ 249 (661)
T 2d7d_A 170 NELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGDRDHVAIFPASHF 249 (661)
T ss_dssp HHHHHHHHHTTCEECSSSCCTTEEEEETTEEEEECTTCSSEEEEEEESSSBEEEEEEEETTTCCEEEECSEEEECCSSSS
T ss_pred HHHHHHHHHcCCeeCCcCCCCceEEEeCceeEEeCCcccCceEEEEEcCceEEEEEEEccCcCcEeeccceEEEECCccc
Confidence 5688889999998866655432 2211 1111 233334578999965 78887765
Q ss_pred HhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH---------hcccC-----Cc-EEEEEECCCCHHHHHHHHh
Q 013189 207 IMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK---------FSYQT-----GV-KVVVAYGGAPINQQLRELE 271 (448)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~---------~~~~~-----~~-~~~~~~gg~~~~~~~~~l~ 271 (448)
+..... ...++..++++|+.|+.. ++. +...+ .+ ....+.|+.+...+...+.
T Consensus 250 ~~~~~~-----------~~~~i~~i~~el~~qi~~-~~~~~~~~ea~~L~~~~~~~~e~l~~~~~~~G~e~~~~~~~~~~ 317 (661)
T 2d7d_A 250 VTRAEK-----------MEKAIQNIEKELEEQLKV-MHENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRP 317 (661)
T ss_dssp CCCHHH-----------HHHHHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHHHHSCCTTGGGGHHHHTTCC
T ss_pred CcCHHH-----------HHHHHHHHHHHHHHHHHH-HHhcchHHHHHHHHHHhHhHHHHhhhcCeeccchhHHHHHcccc
Confidence 543321 124566788888877643 111 10000 01 1122356666655555444
Q ss_pred cCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcC--CCHHHHH----HHHHHcCC-C------C-------CC
Q 013189 272 RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM--GFEPQIR----KIVQQMDM-P------P-------PG 331 (448)
Q Consensus 272 ~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~--gf~~~i~----~i~~~l~~-~------~-------~~ 331 (448)
.+ +||++|++++.... +|||||+|+|++. ++...+. .++..-.. + + +.
T Consensus 318 ~g-----~tpg~LlDyl~~~~-------llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~ 385 (661)
T 2d7d_A 318 PG-----STPYTLLDYFPDDF-------MIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKH 385 (661)
T ss_dssp TT-----CCCBCGGGGSCSSC-------EEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHT
T ss_pred CC-----CCccHHHHHcccCc-------EEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhcc
Confidence 44 89999999875432 7999999998742 1111111 11111000 0 0 13
Q ss_pred CceEEEEeccCChHHHHHHHHhhcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEe
Q 013189 332 MRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFV 411 (448)
Q Consensus 332 ~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~ 411 (448)
.+|+++||||++....... ...+...+.......+ .+.......+...|+..+..... .+.++||||
T Consensus 386 ~~q~i~~SAT~~~~~~~~~----~~~~~~~~r~~~l~~p----~i~v~~~~~~~~~Ll~~l~~~~~-----~~~~vlVf~ 452 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEHT----DEMVEQIIRPTGLLDP----LIDVRPIEGQIDDLIGEIQARIE-----RNERVLVTT 452 (661)
T ss_dssp CSEEEEECSSCCHHHHHHC----SSCEEECCCTTCCCCC----EEEEECSTTHHHHHHHHHHHHHT-----TTCEEEEEC
T ss_pred CCCEEEEecCCChhHHHhh----hCeeeeeecccCCCCC----eEEEecccchHHHHHHHHHHHHh-----cCCeEEEEE
Confidence 5799999999986543221 1222222211111111 12223334555666666655432 256899999
Q ss_pred CchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 412 ETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 412 ~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+|+..|+.|++.|...|++|..+||++++.+|.+++
T Consensus 453 ~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l 488 (661)
T 2d7d_A 453 LTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEII 488 (661)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHH
Confidence 999999999999999999999999999999999875
No 83
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.35 E-value=1.3e-12 Score=138.56 Aligned_cols=83 Identities=19% Similarity=0.109 Sum_probs=68.9
Q ss_pred CCCHHHHhHhh----hHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013189 167 KPTPVQRHAIP----ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 167 ~pt~~Q~~~i~----~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~ 242 (448)
+|+|.|.+.+. .+..++|+++.||||+|||++|++|++..+... ++++||++||++|+.|+.++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~------------~~kvli~t~T~~l~~Qi~~e 70 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER------------KLKVLYLVRTNSQEEQVIKE 70 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH------------TCEEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc------------CCeEEEECCCHHHHHHHHHH
Confidence 68999999885 455899999999999999999999999987542 24799999999999999999
Q ss_pred HHHhcccCCcEEEEEECCC
Q 013189 243 AKKFSYQTGVKVVVAYGGA 261 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~ 261 (448)
++++.....+++..+.|+.
T Consensus 71 l~~l~~~~~~~~~~l~gr~ 89 (620)
T 4a15_A 71 LRSLSSTMKIRAIPMQGRV 89 (620)
T ss_dssp HHHHHHHSCCCEEECCCHH
T ss_pred HHHHhhccCeEEEEEECCC
Confidence 9998876677777766543
No 84
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.05 E-value=3.4e-10 Score=102.06 Aligned_cols=89 Identities=28% Similarity=0.421 Sum_probs=64.7
Q ss_pred HHhhcCcEEEEeccccCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 351 SDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 351 ~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..||.+|+.+.++.......++.|.+..++...|...|.+++... ..++||||+++..|+.+++.|...|+.
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--------~~~~lVF~~~~~~~~~l~~~L~~~g~~ 80 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT--------PPPVLIFAEKKADVDAIHEYLLLKGVE 80 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTTS--------CSCEEEECSCHHHHHHHHHHHHHHTCC
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC--------CCCEEEEECCHHHHHHHHHHHHHcCCc
Confidence 467889999999888888899999999999999999999888753 457999999999999999999999999
Q ss_pred eEEecCCCCHHHHHHHh
Q 013189 431 ATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 431 ~~~iHg~~~q~eR~~~l 447 (448)
+..+||+|++.+|++++
T Consensus 81 ~~~lhg~~~~~~R~~~l 97 (191)
T 2p6n_A 81 AVAIHGGKDQEERTKAI 97 (191)
T ss_dssp EEEECTTSCHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHH
Confidence 99999999999999876
No 85
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.98 E-value=3.8e-10 Score=119.56 Aligned_cols=145 Identities=19% Similarity=0.229 Sum_probs=91.6
Q ss_pred CHHHHhHhhhHhcCCCeeEeccCCCCcc--hhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 169 TPVQRHAIPISIGGRDLMACAQTGSGKT--AAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 169 t~~Q~~~i~~i~~g~d~li~a~TGsGKT--~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
++.|+.+++.++.++++++++++||||| ++++++++..+.. ..+.++++++||.++|.++.+.+..+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-----------~~~~~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-----------GERCRIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-----------SCCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-----------cCCCeEEEEeCChhHHHHHHHHHHHH
Confidence 7899999999999999999999999999 6677777654311 12356999999999999999888775
Q ss_pred cccCCcEEEEEECCCCHHHHHHHHhcCC-cEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 247 SYQTGVKVVVAYGGAPINQQLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~-~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
....++..... .+.+. +. ... .++-.+|+.. . +.........+++||||||+ |++ .+.+..++..+
T Consensus 220 ~~~l~l~~~~~-~~~~~--~~----~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l 286 (608)
T 1w36_D 220 LRQLPLTDEQK-KRIPE--DA----STLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDAL 286 (608)
T ss_dssp HHHSSCCSCCC-CSCSC--CC----BTTTSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTC
T ss_pred HhcCCCCHHHH-hccch--hh----hhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhC
Confidence 54333221100 00000 00 001 1222233321 1 11122223378999999999 666 47788888887
Q ss_pred CCCCCCCceEEEEecc
Q 013189 326 DMPPPGMRQTMLFSAT 341 (448)
Q Consensus 326 ~~~~~~~~q~i~~SAT 341 (448)
+...|+|++.=.
T Consensus 287 ----~~~~~liLvGD~ 298 (608)
T 1w36_D 287 ----PDHARVIFLGDR 298 (608)
T ss_dssp ----CTTCEEEEEECT
T ss_pred ----CCCCEEEEEcch
Confidence 667899998754
No 86
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=98.84 E-value=1.4e-08 Score=88.92 Aligned_cols=74 Identities=28% Similarity=0.302 Sum_probs=67.0
Q ss_pred CcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHH
Q 013189 367 SSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 367 ~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~ 446 (448)
....++.|.+..++..+|...|.+++.... ..++||||++++.|+.+++.|...|+.+..+||+|++.+|.++
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~-------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~ 77 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTEN-------PDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDV 77 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHHC-------CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhcC-------CCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHH
Confidence 456779999999999999999999998753 6789999999999999999999999999999999999999987
Q ss_pred h
Q 013189 447 I 447 (448)
Q Consensus 447 l 447 (448)
+
T Consensus 78 ~ 78 (163)
T 2hjv_A 78 M 78 (163)
T ss_dssp H
T ss_pred H
Confidence 5
No 87
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=98.82 E-value=1.3e-08 Score=89.91 Aligned_cols=72 Identities=24% Similarity=0.285 Sum_probs=64.9
Q ss_pred ccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 369 TDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 369 ~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
...+.|+|..++..+|...|.+++.... ..++||||+++..|+.+++.|...|+++..+||+|++.+|++++
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~~-------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~ 74 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVLE-------FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRY 74 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHSC-------CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhCC-------CCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHH
Confidence 5678999999999999999999998653 56899999999999999999999999999999999999999875
No 88
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=98.74 E-value=4e-08 Score=86.07 Aligned_cols=71 Identities=24% Similarity=0.266 Sum_probs=63.0
Q ss_pred cceeEEEEEecccc-hHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 370 DLIVQRVEFVHESD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 370 ~~i~q~~~~~~~~~-k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.++.|+|..++..+ |...|.+++.... ..++||||++++.|+.++..|...++.+..+||+|++.+|.+++
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~-------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 73 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSIS-------VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIM 73 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTT-------CSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCC-------CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHH
Confidence 46788998888777 9999999998753 67899999999999999999999999999999999999999875
No 89
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=98.74 E-value=2.5e-08 Score=88.28 Aligned_cols=74 Identities=16% Similarity=0.221 Sum_probs=65.3
Q ss_pred CcccceeEEEEEecccc-hHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHH
Q 013189 367 SSTDLIVQRVEFVHESD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSI 445 (448)
Q Consensus 367 ~~~~~i~q~~~~~~~~~-k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~ 445 (448)
.+..++.|+|..++..+ |...|.+++.... .+++||||+++..|+.++..|...|+.+..+||+|++.+|.+
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~-------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~ 75 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSIT-------IGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRAS 75 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTTSC-------CSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHH
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHhCC-------CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 35678999999998765 8888888887542 678999999999999999999999999999999999999998
Q ss_pred Hh
Q 013189 446 EI 447 (448)
Q Consensus 446 ~l 447 (448)
++
T Consensus 76 ~~ 77 (175)
T 2rb4_A 76 II 77 (175)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 90
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=98.70 E-value=3.9e-08 Score=87.98 Aligned_cols=76 Identities=57% Similarity=0.868 Sum_probs=59.3
Q ss_pred cCcccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHH
Q 013189 366 GSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSI 445 (448)
Q Consensus 366 ~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~ 445 (448)
.....++.|.+..++..+|...|.++|.... ...++||||+++..|+.+++.|...|+.+..+||+|++.+|++
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~------~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~ 87 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATG------KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREE 87 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC-------CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CH
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcC------CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHH
Confidence 4457889999999999999999999998742 2678999999999999999999999999999999999999988
Q ss_pred Hh
Q 013189 446 EI 447 (448)
Q Consensus 446 ~l 447 (448)
++
T Consensus 88 ~~ 89 (185)
T 2jgn_A 88 AL 89 (185)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 91
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=98.42 E-value=6.3e-07 Score=86.30 Aligned_cols=70 Identities=23% Similarity=0.269 Sum_probs=63.8
Q ss_pred ceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 371 LIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 371 ~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+.|++..+...+|...|.+++.... ..++||||++++.++.|++.|...++.+..+||+|++.+|++++
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~-------~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~ 71 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS-------PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVM 71 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC-------CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHH
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC-------CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHH
Confidence 35678888999999999999998764 67899999999999999999999999999999999999999876
No 92
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=98.39 E-value=6.7e-07 Score=81.65 Aligned_cols=69 Identities=23% Similarity=0.278 Sum_probs=61.3
Q ss_pred eeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 372 IVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 372 i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+.+.+..+....|...|.+++.... .+++||||++++.++.+++.|...|+.+..+||+|++.+|++++
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~-------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~ 74 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVAS-------PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVL 74 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHC-------CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHH
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCC-------CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHH
Confidence 3456667788899999999998654 67899999999999999999999999999999999999999876
No 93
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=97.71 E-value=5.1e-08 Score=85.86 Aligned_cols=71 Identities=23% Similarity=0.347 Sum_probs=62.4
Q ss_pred cceeEEEEEecc-cchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 370 DLIVQRVEFVHE-SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 370 ~~i~q~~~~~~~-~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+++.|.+..++. ..|...|.+++.... ..++||||+++..|+.+++.|...++.+..+||+|++.+|.+++
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~-------~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~ 73 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQPE-------ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAI 73 (170)
Confidence 357788888877 888998988887643 56899999999999999999999999999999999999998775
No 94
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.05 E-value=1.1e-05 Score=82.29 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=51.1
Q ss_pred HCCCCCCCHHHHhHhhhHhc----C-CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHH
Q 013189 162 RCKYVKPTPVQRHAIPISIG----G-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~----g-~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 236 (448)
-+.|..+++-|+.++..++. + ..+++.|+.|||||... ..++..+...+. ..+++++||...+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~~-----------~~il~~a~T~~Aa 87 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTGE-----------TGIILAAPTHAAK 87 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTTC-----------CCEEEEESSHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcCC-----------ceEEEecCcHHHH
Confidence 34788899999999987643 2 38999999999999753 344555544321 2489999999988
Q ss_pred HHHHHHH
Q 013189 237 SQIHVEA 243 (448)
Q Consensus 237 ~qi~~~~ 243 (448)
..+.+.+
T Consensus 88 ~~l~~~~ 94 (459)
T 3upu_A 88 KILSKLS 94 (459)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 7776655
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.99 E-value=2.3e-05 Score=82.15 Aligned_cols=127 Identities=15% Similarity=0.113 Sum_probs=78.8
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
..+++.|+.++..++.++.+++.++.|+|||... ..++..+... +.++++++||...+..+.+.+..
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~~------------g~~Vl~~ApT~~Aa~~L~e~~~~ 254 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAESL------------GLEVGLCAPTGKAARRLGEVTGR 254 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHHT------------TCCEEEEESSHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHhc------------CCeEEEecCcHHHHHHhHhhhcc
Confidence 3578999999999998899999999999999853 2333333222 23589999999999887664421
Q ss_pred hcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
....+ .+.+ ... |. .+..........++||||||+.+-. ..+..++..+
T Consensus 255 -------~a~Ti---------h~ll----~~~---~~----~~~~~~~~~~~~dvlIIDEasml~~----~~~~~Ll~~~ 303 (574)
T 3e1s_A 255 -------TASTV---------HRLL----GYG---PQ----GFRHNHLEPAPYDLLIVDEVSMMGD----ALMLSLLAAV 303 (574)
T ss_dssp -------CEEEH---------HHHT----TEE---TT----EESCSSSSCCSCSEEEECCGGGCCH----HHHHHHHTTS
T ss_pred -------cHHHH---------HHHH----cCC---cc----hhhhhhcccccCCEEEEcCccCCCH----HHHHHHHHhC
Confidence 11100 0010 000 00 0111122344678999999996533 5666777666
Q ss_pred CCCCCCCceEEEEec
Q 013189 326 DMPPPGMRQTMLFSA 340 (448)
Q Consensus 326 ~~~~~~~~q~i~~SA 340 (448)
+...++|++.=
T Consensus 304 ----~~~~~lilvGD 314 (574)
T 3e1s_A 304 ----PPGARVLLVGD 314 (574)
T ss_dssp ----CTTCEEEEEEC
T ss_pred ----cCCCEEEEEec
Confidence 45566776643
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.97 E-value=6.9e-05 Score=79.45 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=54.8
Q ss_pred CCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013189 165 YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 165 ~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~ 244 (448)
+..+++.|..|+..++...-++|.+|.|+|||.... -++..+... .+.++|+++||...+.++.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~~-----------~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-----------GNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHTS-----------SSCCEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHHc-----------CCCeEEEEeCcHHHHHHHHHHHH
Confidence 456899999999988877778999999999998643 344444321 12359999999999999999887
Q ss_pred Hh
Q 013189 245 KF 246 (448)
Q Consensus 245 ~~ 246 (448)
+.
T Consensus 246 ~~ 247 (624)
T 2gk6_A 246 QT 247 (624)
T ss_dssp TT
T ss_pred hc
Confidence 64
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.93 E-value=2.1e-05 Score=83.82 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=52.8
Q ss_pred CCCHHHHhHhhhHhcCCC-eeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 167 KPTPVQRHAIPISIGGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
.+++-|++||..++..++ .+|.+|.|||||.... -++..++.. +.++|+++||..-|.++.+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~-~~I~~l~~~------------~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVV-EIILQAVKQ------------GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHH-HHHHHHHHT------------TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHH-HHHHHHHhC------------CCeEEEEcCchHHHHHHHHHHHh
Confidence 578999999999887776 7899999999998743 344444432 23599999999999999988876
Q ss_pred h
Q 013189 246 F 246 (448)
Q Consensus 246 ~ 246 (448)
.
T Consensus 256 ~ 256 (646)
T 4b3f_X 256 C 256 (646)
T ss_dssp T
T ss_pred c
Confidence 4
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.00011 Score=80.03 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=55.1
Q ss_pred CCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013189 165 YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 165 ~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~ 244 (448)
+..+++.|+.|+..++.+.-++|.||.|||||.... -++..+.... +.++|+++||...+.++.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~-~~i~~l~~~~-----------~~~ILv~a~tn~A~d~l~~rL~ 425 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLSKIH-----------KDRILVCAPSNVAVDHLAAKLR 425 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHH-HHHHHHHHHH-----------CCCEEEEESSHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH-HHHHHHHhCC-----------CCeEEEEcCcHHHHHHHHHHHH
Confidence 456889999999998877778999999999998643 3444444321 1359999999999999999988
Q ss_pred Hh
Q 013189 245 KF 246 (448)
Q Consensus 245 ~~ 246 (448)
++
T Consensus 426 ~~ 427 (802)
T 2xzl_A 426 DL 427 (802)
T ss_dssp HT
T ss_pred hh
Confidence 75
No 99
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.83 E-value=0.0018 Score=68.60 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=52.5
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
..+++-|++++.. ....++|.|+.|||||.+.+--+ ..++.... ...-++|++++|+..+.++.+.+.+
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri-~~l~~~~~--------~~~~~iL~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRI-AWLMSVEN--------CSPYSIMAVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHH-HHHHHTSC--------CCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHH-HHHHHhCC--------CChhhEEEEeccHHHHHHHHHHHHH
Confidence 4689999999973 35679999999999999744333 33433210 1112599999999999999999988
Q ss_pred hc
Q 013189 246 FS 247 (448)
Q Consensus 246 ~~ 247 (448)
+.
T Consensus 77 ~~ 78 (647)
T 3lfu_A 77 LM 78 (647)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.78 E-value=0.00017 Score=78.42 Aligned_cols=70 Identities=17% Similarity=0.130 Sum_probs=54.6
Q ss_pred CCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013189 165 YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 165 ~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~ 244 (448)
...+++.|+.|+..++.+.-++|.+|.|+|||... .-++..+... .+.++|+++||...+.++.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~-----------~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ-----------GNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTT-----------CSSCEEEEESSHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHc-----------CCCcEEEEcCcHHHHHHHHHHHH
Confidence 44678999999999888777899999999999864 3444444431 12359999999999999998887
Q ss_pred Hh
Q 013189 245 KF 246 (448)
Q Consensus 245 ~~ 246 (448)
+.
T Consensus 422 ~~ 423 (800)
T 2wjy_A 422 QT 423 (800)
T ss_dssp TT
T ss_pred Hh
Confidence 64
No 101
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=97.50 E-value=0.00016 Score=68.28 Aligned_cols=64 Identities=11% Similarity=0.154 Sum_probs=56.2
Q ss_pred ecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC-CCCeEEecCCCCHHHHHHHh
Q 013189 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN-GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 379 ~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~-g~~~~~iHg~~~q~eR~~~l 447 (448)
+....|...|.++|...... +.++||||+++..++.|++.|... |+++..+||++++.+|.+++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~-----~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i 156 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDE-----GDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDII 156 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHT-----TCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHhC-----CCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHH
Confidence 45678999999999876432 678999999999999999999885 99999999999999999875
No 102
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.19 E-value=0.0014 Score=57.38 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=16.5
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.++.+++.+|+|+|||...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999854
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.91 E-value=0.0067 Score=60.01 Aligned_cols=71 Identities=17% Similarity=0.065 Sum_probs=55.3
Q ss_pred CCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
.++|+|+..+..+...+-+++..+-+.|||.+....++..++.. .+..+++++|+++-|..+++.++.+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-----------~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-----------KDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS-----------SSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC-----------CCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 68999999998765556689999999999998776665544321 1346999999999999898888876
Q ss_pred cc
Q 013189 247 SY 248 (448)
Q Consensus 247 ~~ 248 (448)
..
T Consensus 232 i~ 233 (385)
T 2o0j_A 232 IE 233 (385)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.51 E-value=0.016 Score=60.75 Aligned_cols=72 Identities=17% Similarity=0.071 Sum_probs=56.2
Q ss_pred CCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
.++|+|+..+..+...+-+++..+-++|||.+...-++..++..+ +..+++++|+++.|..+++.++.+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-----------~~~i~~va~t~~qA~~~~~~i~~~ 231 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----------DKAVGILAHKGSMSAEVLDRTKQA 231 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-----------SCEEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-----------CCeEEEEECCHHHHHHHHHHHHHH
Confidence 479999999987655677999999999999987655554444321 236999999999999999888877
Q ss_pred ccc
Q 013189 247 SYQ 249 (448)
Q Consensus 247 ~~~ 249 (448)
...
T Consensus 232 i~~ 234 (592)
T 3cpe_A 232 IEL 234 (592)
T ss_dssp HTT
T ss_pred HHh
Confidence 543
No 105
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.46 E-value=0.0091 Score=50.74 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=16.6
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.++.+++.+++|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6788999999999999843
No 106
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.018 Score=55.38 Aligned_cols=43 Identities=2% Similarity=0.055 Sum_probs=26.2
Q ss_pred CCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccC
Q 013189 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
...-+|||||+|.|.+. ..+..+++... ......-+|+.++|+
T Consensus 131 ~~~~ii~lDE~d~l~~q---~~L~~l~~~~~-~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 131 KRKTLILIQNPENLLSE---KILQYFEKWIS-SKNSKLSIICVGGHN 173 (318)
T ss_dssp SCEEEEEEECCSSSCCT---HHHHHHHHHHH-CSSCCEEEEEECCSS
T ss_pred CCceEEEEecHHHhhcc---hHHHHHHhccc-ccCCcEEEEEEecCc
Confidence 45678999999999832 34444444321 113345577778876
No 107
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.13 E-value=0.014 Score=58.67 Aligned_cols=87 Identities=21% Similarity=0.173 Sum_probs=52.6
Q ss_pred CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCC
Q 013189 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAP 262 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~ 262 (448)
+-.++.++.|||||.... .++.. ...+|++||++++..+.+.+.+.... .
T Consensus 162 ~v~~I~G~aGsGKTt~I~-----~~~~~-------------~~~lVlTpT~~aa~~l~~kl~~~~~~---------~--- 211 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEIL-----SRVNF-------------EEDLILVPGRQAAEMIRRRANASGII---------V--- 211 (446)
T ss_dssp EEEEEEECTTSCHHHHHH-----HHCCT-------------TTCEEEESCHHHHHHHHHHHTTTSCC---------C---
T ss_pred cEEEEEcCCCCCHHHHHH-----HHhcc-------------CCeEEEeCCHHHHHHHHHHhhhcCcc---------c---
Confidence 347899999999999642 11110 12699999999999988877653100 0
Q ss_pred HHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcC
Q 013189 263 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM 312 (448)
Q Consensus 263 ~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~ 312 (448)
....-|.|-+.++. .......-..++||||||- |++.
T Consensus 212 ----------~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~s-m~~~ 248 (446)
T 3vkw_A 212 ----------ATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGL-MLHT 248 (446)
T ss_dssp ----------CCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGG-GSCH
T ss_pred ----------cccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcc-cCCH
Confidence 01223555444321 2122222348899999997 4453
No 108
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.80 E-value=0.017 Score=55.47 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.6
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
+..+++.+|+|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 467999999999999854
No 109
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.75 E-value=0.063 Score=49.99 Aligned_cols=50 Identities=20% Similarity=0.464 Sum_probs=29.4
Q ss_pred CCeeEEEEecCCccCcC-----CCHHH-HHHHHHHcCCCCCCCceEEEEeccCChH
Q 013189 296 QMIRYLALDEADRMLDM-----GFEPQ-IRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~-----gf~~~-i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
....+|+|||+|.|+.. .+... +..+...++...+...+++++.+|-..+
T Consensus 123 ~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~ 178 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD 178 (272)
T ss_dssp SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH
T ss_pred cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh
Confidence 44678999999998532 12233 3334444544333455677777776554
No 110
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.71 E-value=0.027 Score=54.98 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=16.2
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.+..+++.+|+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3567999999999999864
No 111
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.68 E-value=0.0066 Score=55.06 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=16.3
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.++.+++.+++|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999854
No 112
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.64 E-value=0.16 Score=44.77 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=14.6
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
..+++.+++|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999853
No 113
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.49 E-value=0.034 Score=48.94 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=24.9
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcH
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR 233 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 233 (448)
++=.++.++.|+|||+..+- ++..+... +-+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~-~~~~~~~~------------g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLS-FVEIYKLG------------KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHH-HHHHHHHT------------TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHH-HHHHHHHC------------CCeEEEEeecc
Confidence 55578999999999997532 33333221 12488888874
No 114
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.45 E-value=0.035 Score=49.27 Aligned_cols=40 Identities=15% Similarity=0.058 Sum_probs=25.8
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcH
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR 233 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 233 (448)
.|+=.++++++|+|||++.+ -++.++... +-+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll-~~a~r~~~~------------g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELI-RRIRRAKIA------------KQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHH-HHHHHHHHT------------TCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHH-HHHHHHHHC------------CCEEEEEEecc
Confidence 34557899999999998744 333333222 23488888874
No 115
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.24 E-value=0.052 Score=54.68 Aligned_cols=42 Identities=12% Similarity=0.300 Sum_probs=25.7
Q ss_pred CeeEEEEecCCccCcC-CCHHHHHHHHHHcCCCCCCCceEEEEecc
Q 013189 297 MIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 297 ~v~~lVlDEah~ll~~-gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
...+|+|||+|.+... .....+..+++.+. ....++|+.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~---~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELH---DSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHH---TTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHH---HCCCeEEEEECC
Confidence 5678999999998763 23344555555542 334566665543
No 116
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.22 E-value=0.074 Score=48.88 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.4
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
.+.+++.+|+|+|||...
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999854
No 117
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.15 E-value=0.023 Score=60.46 Aligned_cols=71 Identities=18% Similarity=0.105 Sum_probs=52.3
Q ss_pred CCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
.+++-|++++.. .+..++|.|..|||||.+..-=+...+...+. ....+|+|+.|+..|.++.+.+.++
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~---------~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY---------QARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC---------CGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC---------CHHHeEEEeccHHHHHHHHHHHHHH
Confidence 578999999975 36689999999999999744333333322221 1135999999999999999999876
Q ss_pred cc
Q 013189 247 SY 248 (448)
Q Consensus 247 ~~ 248 (448)
..
T Consensus 71 l~ 72 (673)
T 1uaa_A 71 LG 72 (673)
T ss_dssp SC
T ss_pred cC
Confidence 53
No 118
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.12 E-value=0.037 Score=50.33 Aligned_cols=92 Identities=13% Similarity=0.136 Sum_probs=50.9
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECC
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGG 260 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg 260 (448)
.|.=+++.+++|+|||++.+- ++.++... +-+++++.|...- . -..++....++..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~-~~~r~~~~------------g~kVli~~~~~d~--r---~~~~i~srlG~~~------ 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIR-RLHRLEYA------------DVKYLVFKPKIDT--R---SIRNIQSRTGTSL------ 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHH-HHHHHHHT------------TCCEEEEEECCCG--G---GCSSCCCCCCCSS------
T ss_pred CcEEEEEECCCCCcHHHHHHH-HHHHHHhc------------CCEEEEEEeccCc--h---HHHHHHHhcCCCc------
Confidence 455688999999999997543 33333322 1248888766531 0 0011222212110
Q ss_pred CCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccC
Q 013189 261 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRML 310 (448)
Q Consensus 261 ~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll 310 (448)
..+.+.+...+.+.+.... .-...++||||||+.+.
T Consensus 67 -------------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 67 -------------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp -------------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred -------------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 1234556666766665432 23457899999999653
No 119
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.10 E-value=0.014 Score=54.88 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=29.9
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhh--HhcCCCeeEeccCCCCcchhh
Q 013189 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPI--SIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~--i~~g~d~li~a~TGsGKT~~~ 199 (448)
.+|+++.-.+..++.+...-. .| -.....+.. +...+.+++.+|+|+|||...
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVE-LP-LKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH-HH-HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH-HH-hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 457777666666666654210 00 000011111 124567999999999999854
No 120
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.03 E-value=0.02 Score=54.29 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.5
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
+.++++.+|+|+|||...
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999864
No 121
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.96 E-value=0.14 Score=51.27 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=38.9
Q ss_pred CCeeEEEEecCCccC---cCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhh
Q 013189 296 QMIRYLALDEADRML---DMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL 354 (448)
Q Consensus 296 ~~v~~lVlDEah~ll---~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l 354 (448)
...+++|||++-++- +..+..++..+...+ ....-+++++|+...+....+..|.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~----~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL----KPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH----CCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhh----CCcceEEEEeCccchHHHHHHHHHh
Confidence 567899999998754 334566777777776 3345678889987766666666664
No 122
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.95 E-value=0.029 Score=59.18 Aligned_cols=112 Identities=22% Similarity=0.295 Sum_probs=73.3
Q ss_pred CCCHHHHhHhhhHhc--CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013189 167 KPTPVQRHAIPISIG--GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~--g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~ 244 (448)
.+|.-|.+++..++. ....++.|.-|.|||++.-+.+- .+. ..++|.+|+.+-+..+.+.+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~~---------------~~~~vtAP~~~a~~~l~~~~~ 238 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RIA---------------GRAIVTAPAKASTDVLAQFAG 238 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HSS---------------SCEEEECSSCCSCHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HHH---------------hCcEEECCCHHHHHHHHHHhh
Confidence 689999999987765 23478999999999976544332 221 126999999997766554433
Q ss_pred HhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCCCHHHHHHHHHH
Q 013189 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 245 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
+ .|-+..|..+.. .+...++||||||=.+-- +.+..++..
T Consensus 239 ~-----------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp~----pll~~ll~~ 278 (671)
T 2zpa_A 239 E-----------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIPA----PLLHQLVSR 278 (671)
T ss_dssp G-----------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSCH----HHHHHHHTT
T ss_pred C-----------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCCH----HHHHHHHhh
Confidence 2 133445655331 244689999999986633 566666653
Q ss_pred cCCCCCCCceEEEEeccC
Q 013189 325 MDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 325 l~~~~~~~~q~i~~SAT~ 342 (448)
. ..++||.|.
T Consensus 279 ~--------~~v~~~tTv 288 (671)
T 2zpa_A 279 F--------PRTLLTTTV 288 (671)
T ss_dssp S--------SEEEEEEEB
T ss_pred C--------CeEEEEecC
Confidence 3 146677774
No 123
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.81 E-value=0.13 Score=49.27 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=28.9
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhH-----hcCCCeeEeccCCCCcchhh
Q 013189 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPIS-----IGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i-----~~g~d~li~a~TGsGKT~~~ 199 (448)
.+|+++.-.+.+++.|.+.-. .|.+ .|.+ ...+.+++.+|+|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 468888766666666553210 0000 0111 12367999999999999854
No 124
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.69 E-value=0.034 Score=63.40 Aligned_cols=71 Identities=25% Similarity=0.266 Sum_probs=52.2
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
.++|+-|..+|..- +++++|.|.-|||||.+.+-=++..+..... ....-++|||++|+..|..+.+.+.+
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~-------~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN-------PIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS-------CCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC-------CCCccceEEEeccHHHHHHHHHHHHH
Confidence 36899999998754 8899999999999999855445544433210 01123599999999999999887766
No 125
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.51 E-value=0.056 Score=51.67 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=16.0
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
++++++.+++|+|||...
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999854
No 126
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.42 E-value=0.062 Score=57.70 Aligned_cols=71 Identities=20% Similarity=0.188 Sum_probs=52.0
Q ss_pred CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
..+++-|++++.. ....++|.|..|||||.+..-=+ .+++.... .....+|+|+.|+..|.++.+.+.+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri-~~ll~~~~--------~~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRI-AYLMAEKH--------VAPWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHH-HHHHHTTC--------CCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHH-HHHHHhcC--------CCHHHeEEEeccHHHHHHHHHHHHH
Confidence 4689999999875 35689999999999999744333 33433210 1113599999999999999998887
Q ss_pred hc
Q 013189 246 FS 247 (448)
Q Consensus 246 ~~ 247 (448)
+.
T Consensus 79 ~l 80 (724)
T 1pjr_A 79 LL 80 (724)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 127
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.37 E-value=0.35 Score=45.96 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=23.3
Q ss_pred CCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEE
Q 013189 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLF 338 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~ 338 (448)
...++|||||+|.|........+..+++.. +...++|+.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~----~~~~~iI~~ 142 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAY----SSNCSIIIT 142 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHH----GGGCEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhC----CCCcEEEEE
Confidence 467899999999986212234455555543 334555553
No 128
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.36 E-value=0.29 Score=43.55 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=14.1
Q ss_pred CeeEeccCCCCcchhh
Q 013189 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~li~a~TGsGKT~~~ 199 (448)
.+++.+++|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999853
No 129
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.24 E-value=0.021 Score=54.85 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=29.8
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhH-----hcCCCeeEeccCCCCcchhh
Q 013189 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPIS-----IGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i-----~~g~d~li~a~TGsGKT~~~ 199 (448)
.+|.++.-.+.+++.|...-. .|. ..|.+ ...+.+++.+|+|+|||+..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 457888766777776664310 011 11111 12357999999999999854
No 130
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.24 E-value=0.33 Score=46.67 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=23.8
Q ss_pred CCHHHHhHhhhHh----cCC---CeeEeccCCCCcchhhh
Q 013189 168 PTPVQRHAIPISI----GGR---DLMACAQTGSGKTAAFC 200 (448)
Q Consensus 168 pt~~Q~~~i~~i~----~g~---d~li~a~TGsGKT~~~~ 200 (448)
..|+|..++..+. +++ -+++.+|.|+|||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 3577777765443 443 38999999999998654
No 131
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.23 E-value=0.049 Score=52.98 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.7
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
+..+++.+++|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999954
No 132
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=94.19 E-value=0.35 Score=41.07 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=54.9
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh---c-CCcEEEeChhHHHHHHhcccccCCCeeE
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~~ 300 (448)
++||.|+++..+..+.+.+.+. ++.+..++|+.+..+....+. . ..+|||+|. .+ ...+++..+++
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gld~~~~~~ 106 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VA-ARGIDIENISL 106 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TTTCCCSCCSE
T ss_pred cEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcCCchhcCCE
Confidence 5999999999999999999875 678899999988766554433 2 478999992 22 23568888999
Q ss_pred EEEecC
Q 013189 301 LALDEA 306 (448)
Q Consensus 301 lVlDEa 306 (448)
||.-+.
T Consensus 107 Vi~~~~ 112 (163)
T 2hjv_A 107 VINYDL 112 (163)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 887543
No 133
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.09 E-value=0.14 Score=49.79 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=14.5
Q ss_pred CeeEeccCCCCcchhh
Q 013189 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~li~a~TGsGKT~~~ 199 (448)
.+++.+++|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999954
No 134
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.08 E-value=0.28 Score=47.25 Aligned_cols=42 Identities=10% Similarity=0.254 Sum_probs=24.9
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEecc
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
....+++||||+|. ++......+.++++.. +....+|+.|-.
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~----~~~~~~Il~t~~ 173 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKY----SKNIRLIMVCDS 173 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHS----TTTEEEEEEESC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhh----cCCCEEEEEeCC
Confidence 34678999999998 4533344555555554 344555555543
No 135
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.00 E-value=0.077 Score=47.80 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=24.7
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHH
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRE 234 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptre 234 (448)
|+=.+++++.|+|||+..+--+. ++... +-+++|+.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~-r~~~~------------g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVR-RTQFA------------KQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH-HHHHT------------TCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHH-HHHHC------------CCEEEEEEeccC
Confidence 44467899999999987543333 33221 234899988764
No 136
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.86 E-value=0.15 Score=43.77 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.5
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
...+++++++|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 367999999999999864
No 137
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=93.77 E-value=0.38 Score=41.39 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=55.1
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh---c-CCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.++||.|+++..+..+++.+.+. ++.+..++|+.+..+....+. . ..+|||+|. .+ ...+++..++
T Consensus 35 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~~~ 104 (175)
T 2rb4_A 35 GQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-ARGIDVKQVT 104 (175)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-CTTTCCTTEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-hcCCCcccCC
Confidence 46999999999999999988874 678889999988766554443 2 479999993 12 3456889999
Q ss_pred EEEEec
Q 013189 300 YLALDE 305 (448)
Q Consensus 300 ~lVlDE 305 (448)
+||.=+
T Consensus 105 ~Vi~~d 110 (175)
T 2rb4_A 105 IVVNFD 110 (175)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 998633
No 138
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=93.73 E-value=2.2 Score=37.29 Aligned_cols=72 Identities=26% Similarity=0.330 Sum_probs=55.0
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
+++||.|++++-+..+.+.+++. ++.+..++|+.+..+....+. ...+|||+| +.+. ..+++..++
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~Gldi~~v~ 124 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KGLDFPAIQ 124 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TTCCCCCCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cCCCcccCC
Confidence 35999999999999999998875 578889999988766554443 258999999 2333 356888999
Q ss_pred EEEEec
Q 013189 300 YLALDE 305 (448)
Q Consensus 300 ~lVlDE 305 (448)
+||.=+
T Consensus 125 ~VI~~d 130 (191)
T 2p6n_A 125 HVINYD 130 (191)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 888743
No 139
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.67 E-value=0.27 Score=46.47 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=14.4
Q ss_pred CeeEeccCCCCcchhh
Q 013189 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~li~a~TGsGKT~~~ 199 (448)
++++.+|+|+|||...
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6999999999999864
No 140
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.56 E-value=0.15 Score=44.84 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=15.3
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
+.+++.+++|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999854
No 141
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.32 E-value=0.094 Score=45.01 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.5
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
...+++.+++|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999854
No 142
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=93.13 E-value=0.5 Score=42.19 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=54.0
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh---c-CCcEEEeChhHHHHHHhcccccCCCeeE
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~~ 300 (448)
++||.|++++-+..+++.+.+. ++.+..++|+.+..++...+. . ..+|||||. .+ ...+++..+++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidi~~v~~ 102 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VA-ARGLDIPQVDL 102 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TT-TCSSSCCCBSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hh-hcCCCCccCcE
Confidence 5999999999999999988875 678889999998776655443 2 478999992 22 24568889998
Q ss_pred EEE
Q 013189 301 LAL 303 (448)
Q Consensus 301 lVl 303 (448)
||.
T Consensus 103 Vi~ 105 (212)
T 3eaq_A 103 VVH 105 (212)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 143
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=93.04 E-value=0.64 Score=39.46 Aligned_cols=73 Identities=18% Similarity=0.258 Sum_probs=54.8
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh---c-CCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.++||.+++++.+..+.+.+++. ++.+..++|+.+..+....+. . ...|||+|. .+ ...+++..++
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~G~d~~~~~ 100 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LL-ARGIDVQQVS 100 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GG-TTTCCCCSCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hh-hcCCCcccCC
Confidence 35999999999999999988874 577889999988766554433 2 479999993 22 2456788899
Q ss_pred EEEEecC
Q 013189 300 YLALDEA 306 (448)
Q Consensus 300 ~lVlDEa 306 (448)
+||.-+.
T Consensus 101 ~Vi~~~~ 107 (165)
T 1fuk_A 101 LVINYDL 107 (165)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 8887443
No 144
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.86 E-value=0.18 Score=49.05 Aligned_cols=18 Identities=28% Similarity=0.169 Sum_probs=15.3
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
.+.+++.+++|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356999999999999864
No 145
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.81 E-value=0.18 Score=44.67 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=24.9
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCc
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPT 232 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt 232 (448)
.++=.++.++.|||||...+ -.+.++... +-+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll-~~i~n~~~~------------~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELM-RRVRRFQIA------------QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHH-HHHHHHHHT------------TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHH-HHHHHHHHc------------CCeEEEEccc
Confidence 35668899999999996533 333333222 1248888776
No 146
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.73 E-value=0.23 Score=44.76 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=25.6
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHH
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRE 234 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptre 234 (448)
.|.=.+++++.|+|||+..+ -.+.++... +.+++|+.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Ll-r~~~r~~~~------------g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELI-RRLRRGIYA------------KQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHH-HHHHHHHHT------------TCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHH-HHHHHHHHc------------CCceEEEEeccC
Confidence 35557899999999998643 333433322 234888888654
No 147
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=92.51 E-value=2.2 Score=36.39 Aligned_cols=72 Identities=13% Similarity=0.087 Sum_probs=54.7
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh---c-CCcEEEeChhHHHHHHhcccccCCCeeE
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~~ 300 (448)
++||.|+++..+..+++.+.+. ++.+..++|+.+..+....+. . ..+|||+|.- -...+++..+++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gldi~~~~~ 102 (172)
T 1t5i_A 33 QVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMDIERVNI 102 (172)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC------CSTTCCGGGCSE
T ss_pred cEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc------hhcCcchhhCCE
Confidence 5999999999999999999874 678889999988766554443 2 4799999931 123567888898
Q ss_pred EEEecC
Q 013189 301 LALDEA 306 (448)
Q Consensus 301 lVlDEa 306 (448)
||.-+.
T Consensus 103 Vi~~d~ 108 (172)
T 1t5i_A 103 AFNYDM 108 (172)
T ss_dssp EEESSC
T ss_pred EEEECC
Confidence 887443
No 148
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=92.49 E-value=2.3 Score=40.89 Aligned_cols=77 Identities=12% Similarity=0.192 Sum_probs=59.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh---c-CCcEEEeChhHHHHHHhcccccCCCe
Q 013189 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 223 ~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~TP~~L~~~l~~~~~~l~~v 298 (448)
..++||.++++.-+..+++.+++. ++.+..++|+.+..++...+. . ..+|||+|. +-...+++..+
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCcccC
Confidence 357999999999999999999874 567888999988766554432 2 478999994 22346789999
Q ss_pred eEEEEecCCcc
Q 013189 299 RYLALDEADRM 309 (448)
Q Consensus 299 ~~lVlDEah~l 309 (448)
++||.-+...+
T Consensus 313 ~~Vi~~~~p~~ 323 (395)
T 3pey_A 313 SMVVNYDLPTL 323 (395)
T ss_dssp EEEEESSCCBC
T ss_pred CEEEEcCCCCC
Confidence 99998766543
No 149
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.37 E-value=0.23 Score=49.99 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=29.3
Q ss_pred CCcccCCCCHHHHHHHHHCCC---CCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhh
Q 013189 145 NTFAEIDLGEALNLNIRRCKY---VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~~~~---~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 199 (448)
.+|+++.-.+.+++.|...-. ..|.-++ ......+.+++.+|+|+|||+..
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHHH
Confidence 467887656666666654210 0011000 01123467999999999999854
No 150
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.14 E-value=0.3 Score=49.20 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.8
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
..+++.+|+|+|||...
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46999999999999954
No 151
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.07 E-value=0.22 Score=48.51 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=15.6
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
.+.+++.+|+|+|||+..
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 467999999999999864
No 152
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.06 E-value=1.1 Score=44.92 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=14.4
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
.-+++++++|+|||+..
T Consensus 101 ~vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTV 117 (443)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 35889999999999964
No 153
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.99 E-value=0.28 Score=44.64 Aligned_cols=41 Identities=12% Similarity=0.090 Sum_probs=26.1
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHH
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRE 234 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptre 234 (448)
.|+=.+++++.|+|||...+--+.. +.. .+-+++++-|...
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r-~~~------------~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRR-FQI------------AQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH-HHT------------TTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHH-HHH------------CCCeEEEEeecCC
Confidence 3556788999999999875433333 221 1234888877653
No 154
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.95 E-value=0.73 Score=44.21 Aligned_cols=38 Identities=18% Similarity=0.383 Sum_probs=23.2
Q ss_pred CCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEE
Q 013189 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLF 338 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~ 338 (448)
...+++|+||+|.|... ....+.++++.. +....+++.
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~----~~~~~~il~ 146 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERY----TKNTRFCVL 146 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHT----TTTEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcC----CCCeEEEEE
Confidence 45789999999988542 224455555543 444545544
No 155
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.84 E-value=0.17 Score=47.95 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=29.0
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHhh-hHhcCCCeeEeccCCCCcchhh
Q 013189 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIP-ISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~-~i~~g~d~li~a~TGsGKT~~~ 199 (448)
.+|+++.-.+.+++.|...-. .|......... -+..++.+++.+|+|+|||+..
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~-~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQ-YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHH-HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHH-HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 467777655656555553200 00000000000 1224577999999999999854
No 156
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=91.60 E-value=2.1 Score=41.56 Aligned_cols=72 Identities=21% Similarity=0.259 Sum_probs=55.8
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh---c-CCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.++||.|+++.-+..+++.+.+. ++.+..++|+.+..++...+. . ..+|||||. .+ ...+++..++
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~~~ 336 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VC-ARGIDVEQVS 336 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TSSCCCTTEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cc-ccCCCccCCC
Confidence 46999999999999999999885 567888999988766654442 2 478999994 22 3467899999
Q ss_pred EEEEec
Q 013189 300 YLALDE 305 (448)
Q Consensus 300 ~lVlDE 305 (448)
+||.-.
T Consensus 337 ~Vi~~~ 342 (412)
T 3fht_A 337 VVINFD 342 (412)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 988543
No 157
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.59 E-value=0.14 Score=48.47 Aligned_cols=17 Identities=24% Similarity=0.141 Sum_probs=14.6
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
+.+++.+|+|+|||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999854
No 158
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.54 E-value=0.7 Score=42.24 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=27.8
Q ss_pred CCcccCCCCHHHHHHHHHCC--CCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhh
Q 013189 145 NTFAEIDLGEALNLNIRRCK--YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~~~--~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 199 (448)
.+|+++.-.+.+++.+.+.- +..+..++... ....+.+++.+++|+|||+..
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHH
Confidence 46777766666665554320 01111111100 012356999999999999854
No 159
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.50 E-value=0.38 Score=46.03 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=15.1
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
..+++.+++|+|||+..
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999854
No 160
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.46 E-value=0.54 Score=45.01 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=14.8
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
.++++.+|+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45999999999999854
No 161
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.42 E-value=0.18 Score=51.76 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=25.4
Q ss_pred CCeeEEEEecCCccCcC--CCHHHHHHHHHHcCCCCCCCceEEEEeccC
Q 013189 296 QMIRYLALDEADRMLDM--GFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~--gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
..-.+|||||+|.|... ++...+..+++.. ...+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~------~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT------STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC------SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc------CCCEEEEEcCC
Confidence 34578999999998653 2334455555442 23467777664
No 162
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.33 E-value=0.41 Score=44.81 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=28.8
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHH-HhHhhhH-hcCCCeeEeccCCCCcchhh
Q 013189 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQ-RHAIPIS-IGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 145 ~~f~~~~l~~~l~~~l~~~~~~~pt~~Q-~~~i~~i-~~g~d~li~a~TGsGKT~~~ 199 (448)
.+|+++.=.+.+++.+.+.-. . |.. .+.+..+ ...+.+++.+|+|+|||+..
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~-~--~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVI-L--PSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTH-H--HHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHH-h--hhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 457777655666666654210 0 000 0000011 23578999999999999854
No 163
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.25 E-value=0.34 Score=43.65 Aligned_cols=24 Identities=17% Similarity=-0.020 Sum_probs=18.6
Q ss_pred hcCCCeeEeccCCCCcchhhhhhH
Q 013189 180 IGGRDLMACAQTGSGKTAAFCFPI 203 (448)
Q Consensus 180 ~~g~d~li~a~TGsGKT~~~~lpi 203 (448)
..|.-+++.+++|+|||.....-+
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHH
Confidence 356779999999999999654433
No 164
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.16 E-value=0.53 Score=42.46 Aligned_cols=52 Identities=15% Similarity=0.122 Sum_probs=31.1
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
.|.-+++.+++|+|||...+--+.. +... +..++++. +.+...++.+.+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~-~~~~------------~~~v~~~~-~e~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN-GLKM------------GEPGIYVA-LEEHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH-HHHT------------TCCEEEEE-SSSCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHhc------------CCeEEEEE-ccCCHHHHHHHHHHc
Confidence 5677999999999999964433332 2221 11366665 333445666666554
No 165
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.09 E-value=0.32 Score=43.38 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=17.0
Q ss_pred hcCCCeeEeccCCCCcchhhh
Q 013189 180 IGGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 180 ~~g~d~li~a~TGsGKT~~~~ 200 (448)
..|.-+++.+++|+|||+...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHH
Confidence 356778999999999998543
No 166
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.98 E-value=0.6 Score=45.81 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=15.9
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
.+.+++.+++|+|||+..
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999854
No 167
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.95 E-value=0.72 Score=43.61 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=15.6
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
...+++.+++|+|||...
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 367999999999999854
No 168
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=90.83 E-value=0.53 Score=44.23 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=25.6
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHhHhhhHhcC--CCeeEeccCCCCcchhh
Q 013189 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 146 ~f~~~~l~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~ 199 (448)
+|.++--.+.+.+.+... +..+ .++++.+|.|+|||...
T Consensus 15 ~~~~~~g~~~~~~~l~~~---------------l~~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGY---------------VERKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SGGGSCSCHHHHHHHHTT---------------TTTTCCCCEEEESSSSSSHHHHH
T ss_pred CHHHHhCCHHHHHHHHHH---------------HhCCCCCeEEEECcCCcCHHHHH
Confidence 456665556666666542 1122 25999999999999854
No 169
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.76 E-value=2.4 Score=40.74 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.9
Q ss_pred CeeEeccCCCCcchhh
Q 013189 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~li~a~TGsGKT~~~ 199 (448)
-+++.++.|+|||...
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3799999999999864
No 170
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=90.69 E-value=2 Score=37.23 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=44.8
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHH---h-cCCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---E-RGVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.++||.|+++.-+..+.+.++.. ++.+..++|+.+..+....+ . ...+|||+|. .+. ..+++..+.
T Consensus 47 ~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldi~~~~ 116 (185)
T 2jgn_A 47 SLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISNVK 116 (185)
T ss_dssp SCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSBS
T ss_pred CeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhh-cCCCcccCC
Confidence 45999999999999999988874 67888889987655443322 2 2578999992 222 346788899
Q ss_pred EEEEe
Q 013189 300 YLALD 304 (448)
Q Consensus 300 ~lVlD 304 (448)
+||.=
T Consensus 117 ~VI~~ 121 (185)
T 2jgn_A 117 HVINF 121 (185)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 88863
No 171
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=90.61 E-value=5 Score=42.27 Aligned_cols=76 Identities=20% Similarity=0.266 Sum_probs=59.7
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHH---hc-CCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.++||.|+|+..+..+.+.+... ++++..++++....+....+ .. ..+|||||- . -...+++..++
T Consensus 446 ~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~-l~~GlDip~v~ 515 (661)
T 2d7d_A 446 ERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----L-LREGLDIPEVS 515 (661)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----C-CSTTCCCTTEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----h-hhCCcccCCCC
Confidence 47999999999999999998885 67888889888766555443 32 489999994 2 23467899999
Q ss_pred EEEEecCCcc
Q 013189 300 YLALDEADRM 309 (448)
Q Consensus 300 ~lVlDEah~l 309 (448)
+||+=++|..
T Consensus 516 lVi~~d~d~~ 525 (661)
T 2d7d_A 516 LVAILDADKE 525 (661)
T ss_dssp EEEETTTTCC
T ss_pred EEEEeCcccc
Confidence 9999999865
No 172
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.59 E-value=0.23 Score=49.08 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=31.8
Q ss_pred CCCCcccCCCCHHHHHHHHHC---CCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhh
Q 013189 143 AVNTFAEIDLGEALNLNIRRC---KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 143 ~~~~f~~~~l~~~l~~~l~~~---~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 199 (448)
|.-+|++.+=-+..++.|++. .+..|--++..-++ .-+-+++.+|.|+|||+..
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~---~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIA---QPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC---CCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCceEEeCCCCCCHHHHH
Confidence 446788886445555555432 12223223332221 2367999999999999853
No 173
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=90.58 E-value=1 Score=42.68 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=53.4
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeChhHHHHHHhcccccCCCeeE
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~ 300 (448)
++||.|+|++-+..+++.+.+. ++.+..++|+.+..++...+. ...+|||||- .+. ..+++..+++
T Consensus 30 ~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~-~Gidi~~v~~ 99 (300)
T 3i32_A 30 RAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAA-RGLDIPQVDL 99 (300)
T ss_dssp SEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTT-CSTTCCCCSE
T ss_pred CEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhh-cCccccceeE
Confidence 4999999999999998888764 678899999988776655443 2479999992 222 4568889998
Q ss_pred EEE
Q 013189 301 LAL 303 (448)
Q Consensus 301 lVl 303 (448)
||.
T Consensus 100 VI~ 102 (300)
T 3i32_A 100 VVH 102 (300)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 174
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=90.42 E-value=0.85 Score=43.29 Aligned_cols=44 Identities=14% Similarity=0.324 Sum_probs=26.5
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCCh
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~ 344 (448)
....+++||||||.|.. .....+++.+..++ ....+| +.++-+.
T Consensus 80 ~~~~kvviIdead~lt~----~a~naLLk~LEep~-~~t~fI-l~t~~~~ 123 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQ----QAANAFLKALEEPP-EYAVIV-LNTRRWH 123 (305)
T ss_dssp SSSSEEEEETTGGGBCH----HHHHHTHHHHHSCC-TTEEEE-EEESCGG
T ss_pred cCCceEEEeccHHHhCH----HHHHHHHHHHhCCC-CCeEEE-EEECChH
Confidence 35678999999999865 33445555555543 344344 4445443
No 175
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=90.39 E-value=1.3 Score=43.28 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=55.3
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeChhHHHHHHhcccccCCCe
Q 013189 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 223 ~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~Ilv~TP~~L~~~l~~~~~~l~~v 298 (448)
..++||.|++++.+..+++.+++. ++.+..++|+.+..+....+. ...+|||||. .+. ..+++..+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip~v 345 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISNV 345 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCCCE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCcccC
Confidence 456999999999999999998874 678889999998766544433 2579999994 333 45688999
Q ss_pred eEEEE
Q 013189 299 RYLAL 303 (448)
Q Consensus 299 ~~lVl 303 (448)
++||.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 98886
No 176
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.28 E-value=1.2 Score=39.19 Aligned_cols=21 Identities=24% Similarity=0.045 Sum_probs=17.0
Q ss_pred cCCCeeEeccCCCCcchhhhh
Q 013189 181 GGRDLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~l 201 (448)
.|.-+++.+++|+|||+....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 456789999999999986543
No 177
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=90.15 E-value=0.35 Score=42.81 Aligned_cols=52 Identities=17% Similarity=0.351 Sum_probs=33.7
Q ss_pred CCeeEEEEecCCccCcCCC--HHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHH
Q 013189 296 QMIRYLALDEADRMLDMGF--EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS 351 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf--~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~ 351 (448)
..+++|||||+=..+..++ .+.+..++... +...-+|+.+--.|+++.+++.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R----p~~~~vIlTGr~ap~~l~e~AD 172 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNAR----PGHQTVIITGRGCHRDILDLAD 172 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS----CTTCEEEEECSSCCHHHHHHCS
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhC----cCCCEEEEECCCCcHHHHHhCc
Confidence 6789999999966544442 34455555543 4455566666667888777654
No 178
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.88 E-value=0.088 Score=47.90 Aligned_cols=48 Identities=10% Similarity=0.011 Sum_probs=28.7
Q ss_pred CCCeeEEEEecCCccCc-----CCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHH
Q 013189 295 LQMIRYLALDEADRMLD-----MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEI 346 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~-----~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v 346 (448)
....++||+||.-.+++ ......+..++..+.. ... +++++.-...++
T Consensus 133 ~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~---~g~-tii~vtH~~~~~ 185 (251)
T 2ehv_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE---MGV-TTILTTEAPDPQ 185 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH---HCC-EEEEEECCC---
T ss_pred hhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH---CCC-eEEEEECCCCCC
Confidence 35678899999988875 3444557777776621 123 566665554443
No 179
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=89.63 E-value=2 Score=44.42 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=19.9
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHH
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l 207 (448)
.-+++|.+.||||||.+...-++..+
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999998655454443
No 180
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.45 E-value=1.2 Score=41.74 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=14.2
Q ss_pred CeeEeccCCCCcchhh
Q 013189 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~li~a~TGsGKT~~~ 199 (448)
++++.++.|+|||...
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 4999999999999854
No 181
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.17 E-value=0.44 Score=46.01 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=18.5
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHH
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIIS 205 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~ 205 (448)
.|.=+++.|++|+|||...+-.+.+
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4555899999999999865444433
No 182
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.12 E-value=0.52 Score=44.26 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=18.1
Q ss_pred HhcCCCeeEeccCCCCcchhhhh
Q 013189 179 SIGGRDLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 179 i~~g~d~li~a~TGsGKT~~~~l 201 (448)
+..|.-+++.+++|+|||+....
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHH
Confidence 33577799999999999996443
No 183
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=89.04 E-value=4.6 Score=38.79 Aligned_cols=74 Identities=14% Similarity=0.115 Sum_probs=56.6
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh---c-CCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.++||.+++++.+..+++.+++. ++.+..++|+.+..+....+. . ..+|||+|. . -...+++..++
T Consensus 251 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~-~~~Gidi~~~~ 320 (391)
T 1xti_A 251 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----L-FGRGMDIERVN 320 (391)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----C-CSSCBCCTTEE
T ss_pred CcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----h-hhcCCCcccCC
Confidence 46999999999999999998874 677888999988765544433 2 478999993 1 22467899999
Q ss_pred EEEEecCC
Q 013189 300 YLALDEAD 307 (448)
Q Consensus 300 ~lVlDEah 307 (448)
+||.-+..
T Consensus 321 ~Vi~~~~p 328 (391)
T 1xti_A 321 IAFNYDMP 328 (391)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99986543
No 184
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=88.95 E-value=4 Score=38.66 Aligned_cols=73 Identities=14% Similarity=0.229 Sum_probs=54.9
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.++||.|++++-+..+++.+++. ++.+..++|+.+..+....+. ...+|||+|. .+. ..+++..++
T Consensus 239 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~~~ 308 (367)
T 1hv8_A 239 FYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS-RGIDVNDLN 308 (367)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH-HHCCCSCCS
T ss_pred CcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh-cCCCcccCC
Confidence 45899999999999999999885 578888999988766544332 2478999993 222 356788899
Q ss_pred EEEEecC
Q 013189 300 YLALDEA 306 (448)
Q Consensus 300 ~lVlDEa 306 (448)
+||.-+.
T Consensus 309 ~Vi~~~~ 315 (367)
T 1hv8_A 309 CVINYHL 315 (367)
T ss_dssp EEEESSC
T ss_pred EEEEecC
Confidence 8886543
No 185
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.94 E-value=0.21 Score=50.06 Aligned_cols=54 Identities=22% Similarity=0.196 Sum_probs=31.3
Q ss_pred CCCCcccCCCCHHHHHHHHHC---CCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhh
Q 013189 143 AVNTFAEIDLGEALNLNIRRC---KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 143 ~~~~f~~~~l~~~l~~~l~~~---~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 199 (448)
|.-+|++.+=-+..++.|.+. .+..|.-++..-+ ..-+-+++.+|.|||||+..
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHH
Confidence 445788887555555555432 1122222222222 12367999999999999953
No 186
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=88.55 E-value=0.44 Score=49.18 Aligned_cols=19 Identities=32% Similarity=0.337 Sum_probs=16.4
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.+..+++.+|+|+|||+..
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999854
No 187
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.53 E-value=0.96 Score=45.45 Aligned_cols=24 Identities=21% Similarity=0.066 Sum_probs=18.2
Q ss_pred cCCCeeEeccCCCCcchhhhhhHH
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPII 204 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil 204 (448)
.|.-+++.|++|+|||+..+--+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~ 225 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQ 225 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456689999999999986544433
No 188
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=88.50 E-value=0.32 Score=47.68 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=14.3
Q ss_pred CCeeE--eccCCCCcchhh
Q 013189 183 RDLMA--CAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li--~a~TGsGKT~~~ 199 (448)
..+++ .++.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 45888 999999999964
No 189
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=87.89 E-value=7.1 Score=41.17 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=59.0
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHH---hc-CCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.++||.|+|+..+..+.+.+... ++++..++++.+..+....+ .. ..+|||||- .+ ...+++..++
T Consensus 440 ~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~v~ 509 (664)
T 1c4o_A 440 ERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPEVS 509 (664)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTTEE
T ss_pred CEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCCCC
Confidence 47999999999999999988875 57788888888766555443 33 479999993 12 3467899999
Q ss_pred EEEEecCCcc
Q 013189 300 YLALDEADRM 309 (448)
Q Consensus 300 ~lVlDEah~l 309 (448)
+||+=++|..
T Consensus 510 lVI~~d~d~~ 519 (664)
T 1c4o_A 510 LVAILDADKE 519 (664)
T ss_dssp EEEETTTTSC
T ss_pred EEEEeCCccc
Confidence 9999988865
No 190
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.87 E-value=0.48 Score=47.63 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=33.0
Q ss_pred CCCCcccCCCCHHHHHHHHHCC---CCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhh
Q 013189 143 AVNTFAEIDLGEALNLNIRRCK---YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 143 ~~~~f~~~~l~~~l~~~l~~~~---~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 199 (448)
|.-+|++.+=-+.+++.|++.- +..|--++..-+ ..-+-+++.+|.|+|||+..
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi---~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI---DPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC---CCCCceEeeCCCCCcHHHHH
Confidence 4568999876666666666431 112222222211 13467999999999999853
No 191
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=87.69 E-value=1.7 Score=45.23 Aligned_cols=72 Identities=13% Similarity=0.132 Sum_probs=55.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeChhHHHHHHhcccccCCCe
Q 013189 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 223 ~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~Ilv~TP~~L~~~l~~~~~~l~~v 298 (448)
+..+||.|+|+.-+.++++.+++. ++.+..++++.+..+....+. ...+|||||- +-...+++.+|
T Consensus 267 ~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~------a~~~GID~p~V 336 (591)
T 2v1x_A 267 GQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV------AFGMGIDKPDV 336 (591)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT------TSCTTCCCSCE
T ss_pred CCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------hhhcCCCcccc
Confidence 356999999999999999999874 678899999998766554433 3579999993 12346788999
Q ss_pred eEEEEe
Q 013189 299 RYLALD 304 (448)
Q Consensus 299 ~~lVlD 304 (448)
++||.=
T Consensus 337 ~~VI~~ 342 (591)
T 2v1x_A 337 RFVIHH 342 (591)
T ss_dssp EEEEES
T ss_pred cEEEEe
Confidence 998853
No 192
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=87.51 E-value=2 Score=42.74 Aligned_cols=68 Identities=12% Similarity=0.160 Sum_probs=53.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh---c-CCcEEEeChhHHHHHHhcccccCCCeeEE
Q 013189 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIRYL 301 (448)
Q Consensus 226 ~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~~l 301 (448)
+||.|+++.-|..+++.+.+. ++.+..++|+....+....+. . ..+|||||. . -...+++..+++|
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v-~~rGlDi~~v~~V 372 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----V-ASRGLDIKNIKHV 372 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----G-GTSSCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----h-hhCCCCcccCCEE
Confidence 999999999999999988874 678889999988766555443 2 479999994 2 2346789999998
Q ss_pred EE
Q 013189 302 AL 303 (448)
Q Consensus 302 Vl 303 (448)
|.
T Consensus 373 I~ 374 (434)
T 2db3_A 373 IN 374 (434)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 193
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=87.23 E-value=2.2 Score=43.76 Aligned_cols=78 Identities=17% Similarity=0.100 Sum_probs=58.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeChhHHHHHHhcccccCCCe
Q 013189 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 223 ~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~Ilv~TP~~L~~~l~~~~~~l~~v 298 (448)
..++||.|+|+.-|..+++.+++... .++.+..++|+.+..+....+. ...+|||||. .+ ...+++..|
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~GiDip~v 411 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPNV 411 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTTC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hh-hcCCCcccC
Confidence 35799999999999999999987632 2678888999988766554433 3589999994 22 346789999
Q ss_pred eEEEEecCC
Q 013189 299 RYLALDEAD 307 (448)
Q Consensus 299 ~~lVlDEah 307 (448)
++||.-..-
T Consensus 412 ~~VI~~~~p 420 (563)
T 3i5x_A 412 HEVLQIGVP 420 (563)
T ss_dssp CEEEEESCC
T ss_pred CEEEEECCC
Confidence 999876543
No 194
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=87.16 E-value=7.4 Score=37.67 Aligned_cols=72 Identities=11% Similarity=0.167 Sum_probs=55.1
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.++||.|++++-+..+++.+.+. ++.+..++|+.+..+....+. ...+|||+|. . -...+++..++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidi~~v~ 346 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----V-WARGLDVPQVS 346 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----G-GSSSCCCTTEE
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----h-hhCcCCcccCC
Confidence 36999999999999999988874 577888999988766544433 2478999994 2 23467899999
Q ss_pred EEEEec
Q 013189 300 YLALDE 305 (448)
Q Consensus 300 ~lVlDE 305 (448)
+||.-+
T Consensus 347 ~Vi~~~ 352 (410)
T 2j0s_A 347 LIINYD 352 (410)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 988643
No 195
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=86.92 E-value=0.35 Score=49.05 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=14.9
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
+.+++.+|+|+|||+..
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999854
No 196
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=86.75 E-value=8.2 Score=37.16 Aligned_cols=72 Identities=11% Similarity=0.140 Sum_probs=55.0
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh---c-CCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.++||.|++++-+..+++.+++. ++.+..++|+.+..++...+. . ..+|||+|. . -...+++..++
T Consensus 259 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~-~~~Gidip~~~ 328 (400)
T 1s2m_A 259 NQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----L-LTRGIDIQAVN 328 (400)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----C-SSSSCCCTTEE
T ss_pred CcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----c-cccCCCccCCC
Confidence 46999999999999999999875 567888899988766544332 2 478999993 2 23457899999
Q ss_pred EEEEec
Q 013189 300 YLALDE 305 (448)
Q Consensus 300 ~lVlDE 305 (448)
+||.-+
T Consensus 329 ~Vi~~~ 334 (400)
T 1s2m_A 329 VVINFD 334 (400)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 988643
No 197
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=86.59 E-value=2.8 Score=43.32 Aligned_cols=77 Identities=17% Similarity=0.107 Sum_probs=58.6
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.++||.|+|+.-|..+++.+++... .++.+..++|+.+..+....+. ...+|||||- .+ ...+++..|+
T Consensus 289 ~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~-~~GiDip~v~ 361 (579)
T 3sqw_A 289 YKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPNVH 361 (579)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTTCC
T ss_pred CcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hh-hcCCCcccCC
Confidence 4699999999999999999987532 2678888999988766544433 3579999994 22 3467899999
Q ss_pred EEEEecCC
Q 013189 300 YLALDEAD 307 (448)
Q Consensus 300 ~lVlDEah 307 (448)
+||.-..-
T Consensus 362 ~VI~~~~p 369 (579)
T 3sqw_A 362 EVLQIGVP 369 (579)
T ss_dssp EEEEESCC
T ss_pred EEEEcCCC
Confidence 99876654
No 198
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=86.42 E-value=1.4 Score=49.61 Aligned_cols=78 Identities=12% Similarity=0.181 Sum_probs=61.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeChhHHHHHHhcccccCCCe
Q 013189 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 223 ~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~Ilv~TP~~L~~~l~~~~~~l~~v 298 (448)
+.+++|+||+++-+..+++.+++.. .+.++..++|+.+..+....+. ...+|||||. .+ ...+++.++
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~--p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v~-e~GiDip~v 883 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----II-ETGIDIPTA 883 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHC--TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TT-GGGSCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC--CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----cc-eeeecccCC
Confidence 4679999999999999999998863 3578889999988766544333 3589999995 22 346789999
Q ss_pred eEEEEecCCc
Q 013189 299 RYLALDEADR 308 (448)
Q Consensus 299 ~~lVlDEah~ 308 (448)
+++|+..+|.
T Consensus 884 ~~VIi~~~~~ 893 (1151)
T 2eyq_A 884 NTIIIERADH 893 (1151)
T ss_dssp EEEEETTTTS
T ss_pred cEEEEeCCCC
Confidence 9999988874
No 199
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=86.23 E-value=2.3 Score=43.53 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=54.7
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh----cCCcEEEeChhHHHHHHhcccccCCCeeE
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~ 300 (448)
.+||.|+|+.-+..+++.+++. ++.+..++++.+..+....+. ...+|||||. .-...+++.+|++
T Consensus 238 ~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~------a~~~GiD~p~v~~ 307 (523)
T 1oyw_A 238 SGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV------AFGMGINKPNVRF 307 (523)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT------TSCTTTCCTTCCE
T ss_pred cEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------hhhCCCCccCccE
Confidence 5999999999999999999874 678889999988765544332 3589999995 2234578899999
Q ss_pred EEEec
Q 013189 301 LALDE 305 (448)
Q Consensus 301 lVlDE 305 (448)
||.-.
T Consensus 308 VI~~~ 312 (523)
T 1oyw_A 308 VVHFD 312 (523)
T ss_dssp EEESS
T ss_pred EEEEC
Confidence 98643
No 200
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=85.98 E-value=0.42 Score=45.79 Aligned_cols=23 Identities=22% Similarity=-0.009 Sum_probs=17.7
Q ss_pred cCCCeeEeccCCCCcchhhhhhH
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPI 203 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpi 203 (448)
.|.-+++.+++|+|||...+.-+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la 128 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLS 128 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHH
Confidence 35678999999999998654433
No 201
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=85.48 E-value=4.6 Score=38.58 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=35.8
Q ss_pred eeEEEEecCCccC-cCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhh
Q 013189 298 IRYLALDEADRML-DMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL 354 (448)
Q Consensus 298 v~~lVlDEah~ll-~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l 354 (448)
.+++++|.+.++- +.....++..+...+ ..+..++++.++...++...+..|.
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral----~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVT----KPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHH----CCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHh----cCCCCEEEEecHHHHHHHHHHHHHH
Confidence 4567889887653 233556666666666 3445688899988877777777664
No 202
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=85.43 E-value=0.9 Score=44.02 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=17.5
Q ss_pred cCCCeeEeccCCCCcchhhhhh
Q 013189 181 GGRDLMACAQTGSGKTAAFCFP 202 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lp 202 (448)
.|+-+++.++.|+|||...+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~l 81 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHA 81 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4677999999999999864433
No 203
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=85.21 E-value=1.8 Score=44.02 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.7
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
.+.+++.+++|+|||+..
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 467999999999999954
No 204
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=85.12 E-value=1.2 Score=44.56 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=46.0
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhc-CCcEEEeChhHHHHHHhcccccCCCeeEEE
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lV 302 (448)
.++||+||+++-|..+++.+++. ++++..++|... ......+.. ..+|||||. .+. ..+++. +++||
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R-~~~~~~F~~g~~~vLVaT~-----v~e-~GiDip-v~~VI 245 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTF-EREYPTIKQKKPDFILATD-----IAE-MGANLC-VERVL 245 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSC-C--------CCCSEEEESS-----STT-CCTTCC-CSEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhH-HHHHhhhcCCCceEEEECC-----hhh-eeeccC-ceEEE
Confidence 46999999999999999999885 577888888443 223333333 489999994 222 456788 88877
No 205
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.08 E-value=0.84 Score=42.44 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=19.7
Q ss_pred hHhcCCCeeEeccCCCCcchhhhhh
Q 013189 178 ISIGGRDLMACAQTGSGKTAAFCFP 202 (448)
Q Consensus 178 ~i~~g~d~li~a~TGsGKT~~~~lp 202 (448)
-+..|.-+++.+++|+|||+....-
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l 50 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQL 50 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHH
Confidence 3457788999999999999965443
No 206
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.96 E-value=0.56 Score=46.72 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=31.5
Q ss_pred CCCCcccCCCCHHHHHHHHHC---CCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhh
Q 013189 143 AVNTFAEIDLGEALNLNIRRC---KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 143 ~~~~f~~~~l~~~l~~~l~~~---~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 199 (448)
|..+|++.+=-+.+++.|.+. .+..|--++..-++ --+-+++.+|.|+|||+..
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHHH
Confidence 456888886334444444432 12233333333322 2367999999999999953
No 207
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=84.92 E-value=26 Score=32.92 Aligned_cols=196 Identities=12% Similarity=0.067 Sum_probs=97.8
Q ss_pred ceEEEEcCcH---HHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHH----h--cCCcEEEeChh--HHHHHHhccc
Q 013189 224 PLALILAPTR---ELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL----E--RGVDILVATPG--RLVDLLERAR 292 (448)
Q Consensus 224 ~~~lil~Ptr---eLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~--~~~~Ilv~TP~--~L~~~l~~~~ 292 (448)
+++.|++|.. ....++..-+++.+...++.+.++........+...+ . .++|-||.+|. .....++.
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~-- 81 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRL-- 81 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHH--
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHH--
Confidence 3466666653 3445566666666655678888877776665544333 3 37886666552 23333332
Q ss_pred ccCCCeeEEEEecCCccC-------------------cCCCH----HHHHHHHHHcCCCCCCC-ceEEEEeccCChHH-H
Q 013189 293 VSLQMIRYLALDEADRML-------------------DMGFE----PQIRKIVQQMDMPPPGM-RQTMLFSATFPKEI-Q 347 (448)
Q Consensus 293 ~~l~~v~~lVlDEah~ll-------------------~~gf~----~~i~~i~~~l~~~~~~~-~q~i~~SAT~~~~v-~ 347 (448)
+.-..+-+|++|-...-. ..... ...+.+++.....+... +++++++....... .
T Consensus 82 ~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~ 161 (350)
T 3h75_A 82 SQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQ 161 (350)
T ss_dssp HTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHH
T ss_pred HHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHHH
Confidence 122355666666432110 01112 23334444432111223 67888876643221 1
Q ss_pred HHH---HHhhcCcEEEEeccccCcccceeEEEEEec-c-cchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHH
Q 013189 348 RLA---SDFLANYIFLAVGRVGSSTDLIVQRVEFVH-E-SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEH 422 (448)
Q Consensus 348 ~l~---~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~-~-~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~ 422 (448)
.-. ...+.+. ....+.. +.... . ..-...+.++|... .....|||.+...|..+.+
T Consensus 162 ~R~~Gf~~~l~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~L~~~--------~~~~aI~~~~d~~a~g~~~ 222 (350)
T 3h75_A 162 LRERGLRRALAEH----------PQVHLRQ-LVYGEWNRERAYRQAQQLLKRY--------PKTQLVWSANDEMALGAMQ 222 (350)
T ss_dssp HHHHHHHHHHHHC----------TTEEEEE-EEECTTCHHHHHHHHHHHHHHC--------TTEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHHC----------CCeEEEE-EeeCCCcHHHHHHHHHHHHHhC--------CCcCEEEECChHHHHHHHH
Confidence 111 1122211 0000111 11111 1 12233455555543 4568999999999999999
Q ss_pred HHHHCCCC----eEEecCCCCH
Q 013189 423 WLYMNGFP----ATTIHGDRTQ 440 (448)
Q Consensus 423 ~L~~~g~~----~~~iHg~~~q 440 (448)
.|+..|+. +..+--|-+.
T Consensus 223 al~~~G~~vP~di~vvg~d~~~ 244 (350)
T 3h75_A 223 AARELGRKPGTDLLFSGVNSSP 244 (350)
T ss_dssp HHHHTTCCBTTTBEEEEESCCH
T ss_pred HHHHcCCCCCCCeEEEecCCCH
Confidence 99999875 4444434443
No 208
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=84.85 E-value=1.4 Score=44.03 Aligned_cols=25 Identities=24% Similarity=0.070 Sum_probs=18.0
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHH
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIIS 205 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~ 205 (448)
.|.=+++.|++|+|||...+--+.+
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3455899999999999865443333
No 209
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=84.65 E-value=2.8 Score=40.78 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=16.3
Q ss_pred cCCCeeEeccCCCCcchhhh
Q 013189 181 GGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~ 200 (448)
.|+-+++.++.|+|||...+
T Consensus 73 ~G~li~I~G~pGsGKTtlal 92 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLAL 92 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHH
Confidence 45678999999999998543
No 210
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=84.28 E-value=2.1 Score=43.44 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=38.7
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY 248 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~ 248 (448)
.+..+.+.+-||||||++.. .+.... ...+|||+|+..+|.|+++.++.|..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a-----~l~~~~-----------~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVA-----EIAERH-----------AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHH-----HHHHHS-----------SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHH-----HHHHHh-----------CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 45668899999999998532 222211 01289999999999999999999864
No 211
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=84.17 E-value=0.22 Score=27.50 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=12.1
Q ss_pred CccccchhhhccccC
Q 013189 2 STSWADSVSASENAA 16 (448)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (448)
+++|+|||.+++...
T Consensus 8 r~nWs~RV~E~~~~r 22 (26)
T 2yka_B 8 KTSWADRVREAAAQR 22 (26)
Confidence 589999999887654
No 212
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=83.30 E-value=2.4 Score=37.44 Aligned_cols=21 Identities=24% Similarity=0.048 Sum_probs=16.9
Q ss_pred hcCCCeeEeccCCCCcchhhh
Q 013189 180 IGGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 180 ~~g~d~li~a~TGsGKT~~~~ 200 (448)
..|.-+.+.+|+|+|||+...
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 356678999999999998543
No 213
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=82.80 E-value=0.64 Score=44.28 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=18.6
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHH
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIIS 205 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~ 205 (448)
.|.=+++.|++|+|||...+--+.+
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4566999999999999865444433
No 214
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=82.33 E-value=1.1 Score=35.21 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=33.5
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCH
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
..++||||.+-..+...+..|...|+++..+.|++..
T Consensus 55 ~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 55 DKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 6689999999999999999999999999999998754
No 215
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=82.09 E-value=1.7 Score=46.67 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=16.2
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
...++++++++|+|||...
T Consensus 206 ~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SSCEEEEECCTTSSHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHH
Confidence 3567999999999999864
No 216
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=82.04 E-value=1.8 Score=46.39 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.6
Q ss_pred CeeEeccCCCCcchhhh
Q 013189 184 DLMACAQTGSGKTAAFC 200 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~ 200 (448)
.+++.+|||+|||....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999998643
No 217
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=82.76 E-value=0.28 Score=42.10 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=50.7
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhc----CCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER----GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.++||.|+++..+..+.+.+++. ++.+..++|+.+..+....+.. ..+|||+|. .+. ..+++..++
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gid~~~~~ 100 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAA-RGIDIPDVS 100 (170)
Confidence 35999999999999998888774 5778888888776554433322 468999992 222 345677788
Q ss_pred EEEEec
Q 013189 300 YLALDE 305 (448)
Q Consensus 300 ~lVlDE 305 (448)
+||.-+
T Consensus 101 ~Vi~~~ 106 (170)
T 2yjt_D 101 HVFNFD 106 (170)
Confidence 777643
No 218
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=81.78 E-value=0.81 Score=42.36 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=20.5
Q ss_pred HhcCCCeeEeccCCCCcchhhhhhHHHHHh
Q 013189 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 179 i~~g~d~li~a~TGsGKT~~~~lpil~~l~ 208 (448)
+..|.-+.+++|||||||+. +-+|..++
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl--l~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT--IASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH--HHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHH--HHHHHHhC
Confidence 44677799999999999994 33444444
No 219
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=81.63 E-value=3.4 Score=40.69 Aligned_cols=74 Identities=22% Similarity=0.240 Sum_probs=52.2
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEEC--------CCCHHHHHHHHh----cCCcEEEeChhHHHHHHhcc
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYG--------GAPINQQLRELE----RGVDILVATPGRLVDLLERA 291 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~g--------g~~~~~~~~~l~----~~~~Ilv~TP~~L~~~l~~~ 291 (448)
.++||.+++++-+..+.+.+++. ++++..++| +.+..++...+. ..++|||+|. .+ ..
T Consensus 362 ~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~-~~ 431 (494)
T 1wp9_A 362 SKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VG-EE 431 (494)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GG-GG
T ss_pred CeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----cc-cc
Confidence 46999999999999999999885 678888888 655544433332 2479999993 12 24
Q ss_pred cccCCCeeEEEEecCC
Q 013189 292 RVSLQMIRYLALDEAD 307 (448)
Q Consensus 292 ~~~l~~v~~lVlDEah 307 (448)
.+++..+++||+-+..
T Consensus 432 Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 432 GLDVPEVDLVVFYEPV 447 (494)
T ss_dssp GGGSTTCCEEEESSCC
T ss_pred CCCchhCCEEEEeCCC
Confidence 6788899999865544
No 220
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=81.46 E-value=3.1 Score=43.55 Aligned_cols=41 Identities=12% Similarity=-0.027 Sum_probs=28.9
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
++.+|||++|....+.+++.|. .+... ...+++..+|.++|
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll 488 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSML 488 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHH
Confidence 5679999999999999999886 22222 44455555666554
No 221
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=81.25 E-value=0.78 Score=52.61 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=21.3
Q ss_pred HhcCCCeeEeccCCCCcchhhhhhHHHHHh
Q 013189 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 179 i~~g~d~li~a~TGsGKT~~~~lpil~~l~ 208 (448)
+..|+-+-++++||||||. ++-+|.+++
T Consensus 1102 I~~Ge~vaIVG~SGsGKST--L~~lL~rl~ 1129 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKST--VVALLERFY 1129 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTS--HHHHHTTSS
T ss_pred ECCCCEEEEECCCCChHHH--HHHHHhcCc
Confidence 3468889999999999999 444555554
No 222
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=81.23 E-value=0.82 Score=37.82 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=17.6
Q ss_pred HhcCCCeeEeccCCCCcchhh
Q 013189 179 SIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 179 i~~g~d~li~a~TGsGKT~~~ 199 (448)
.....++++.+++|+|||...
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 346678999999999999854
No 223
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=81.16 E-value=2.7 Score=33.80 Aligned_cols=37 Identities=8% Similarity=0.125 Sum_probs=32.5
Q ss_pred ccEEEEe-CchHHHHHHHHHHHHCCCCeEEecCCCCHH
Q 013189 405 ALTLVFV-ETKKGADALEHWLYMNGFPATTIHGDRTQQ 441 (448)
Q Consensus 405 ~~~IIF~-~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~ 441 (448)
.++|||| .+-..+...+..|...|+++..+.|++..=
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAY 127 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHH
Confidence 6899999 588888899999999999999999987653
No 224
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=81.05 E-value=7.3 Score=36.55 Aligned_cols=55 Identities=15% Similarity=0.258 Sum_probs=29.1
Q ss_pred CCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCC-hHHHHHHHHh
Q 013189 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP-KEIQRLASDF 353 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~-~~v~~l~~~~ 353 (448)
.+.++||||.+-+.. .-...+..+...+... ....-++++.||.. .++.+++..+
T Consensus 181 ~~~dlvIiDT~G~~~--~~~~~~~el~~~l~~~-~~~~~~lVl~at~~~~~~~~~~~~~ 236 (296)
T 2px0_A 181 SEYDHVFVDTAGRNF--KDPQYIDELKETIPFE-SSIQSFLVLSATAKYEDMKHIVKRF 236 (296)
T ss_dssp GGSSEEEEECCCCCT--TSHHHHHHHHHHSCCC-TTEEEEEEEETTBCHHHHHHHTTTT
T ss_pred cCCCEEEEeCCCCCh--hhHHHHHHHHHHHhhc-CCCeEEEEEECCCCHHHHHHHHHHH
Confidence 567899999765432 2234455555544311 12223677767754 4455544433
No 225
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=80.88 E-value=26 Score=32.66 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=20.1
Q ss_pred eeEEEEecCCccCc---CCCHHHHHHHHHHc
Q 013189 298 IRYLALDEADRMLD---MGFEPQIRKIVQQM 325 (448)
Q Consensus 298 v~~lVlDEah~ll~---~gf~~~i~~i~~~l 325 (448)
--+|||||+|.+.+ ..+...+..+....
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~ 168 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNL 168 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHC
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcC
Confidence 44799999999864 35766777666653
No 226
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=80.71 E-value=1.1 Score=44.69 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=29.0
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHH
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 236 (448)
...++++.++||||||... -+++..++..+ ..++|+=|..++.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~g------------~~viv~Dpkge~~ 94 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLRG------------DRMVIVDPNGDML 94 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHTT------------CEEEEEEETTHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHCC------------CcEEEEeCCCchh
Confidence 4679999999999999974 34444444322 2366666666664
No 227
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=80.60 E-value=1.1 Score=39.07 Aligned_cols=61 Identities=11% Similarity=0.029 Sum_probs=42.4
Q ss_pred CHHHHhHhhhHhcC--CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013189 169 TPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 169 t~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~ 241 (448)
.+-|..++..++.. +-.++.++-|++|+...+--++..... .+-++.||+|+..-.....+
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~------------~Gr~V~vLAp~~~s~~~l~~ 98 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE------------QGREVQIIAADRRSQMNMKQ 98 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH------------TTCCEEEECSTTHHHHHHSC
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh------------cCeEEEEEcCchHHHHHHHh
Confidence 35689999888744 347889999999999865444432222 23459999999987665433
No 228
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=80.51 E-value=9.3 Score=36.05 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=17.4
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHHh
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l~ 208 (448)
++-+++++++|+|||+.. -.|..++
T Consensus 104 ~~vi~ivG~~GsGKTTl~--~~LA~~l 128 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSC--GKLAKMF 128 (306)
T ss_dssp CEEEEEECCTTSSHHHHH--HHHHHHH
T ss_pred CeEEEEEcCCCChHHHHH--HHHHHHH
Confidence 345789999999999843 3444444
No 229
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=80.28 E-value=1.1 Score=45.77 Aligned_cols=31 Identities=16% Similarity=-0.016 Sum_probs=22.1
Q ss_pred CCHHHHhHhh-hHhcCCCeeEeccCCCCcchh
Q 013189 168 PTPVQRHAIP-ISIGGRDLMACAQTGSGKTAA 198 (448)
Q Consensus 168 pt~~Q~~~i~-~i~~g~d~li~a~TGsGKT~~ 198 (448)
+++.+..-+. .+..|..++++++||||||+.
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 3444444443 345788899999999999984
No 230
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=80.16 E-value=7.2 Score=39.26 Aligned_cols=74 Identities=16% Similarity=0.050 Sum_probs=51.9
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeChhHHHHHHhcccccCCCeeE
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL----ERGVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~ 300 (448)
..+|++..++-+..+.+.+.+. +.++..++|+.+..+....+ ....+|||||+..+- ..+++..+.+
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~-----~GiDip~v~~ 419 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS-----TGISVKNLHH 419 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH-----HSCCCCSEEE
T ss_pred CeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh-----cccccccCcE
Confidence 3455555577677777777764 34788889988866544332 234799999976653 3568999999
Q ss_pred EEEecCC
Q 013189 301 LALDEAD 307 (448)
Q Consensus 301 lVlDEah 307 (448)
||+..++
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9998887
No 231
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=80.09 E-value=1.2 Score=34.23 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=32.5
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRT 439 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~ 439 (448)
..+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 568999999999999999999999999999988764
No 232
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=80.08 E-value=2.2 Score=42.39 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=46.5
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh-cCCcEEEeChhHHHHHHhcccccCCCeeEE
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE-RGVDILVATPGRLVDLLERARVSLQMIRYL 301 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~l 301 (448)
.++||+||+++-+..+++.+++. ++++..++|+.. ......+. ...+|||||. .+. ..+++. +.+|
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r-~~~~~~f~~g~~~vLVaT~-----v~e-~GiDip-~~~V 238 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTF-ESEYPKCKSEKWDFVITTD-----ISE-MGANFK-ADRV 238 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTH-HHHTTHHHHSCCSEEEECG-----GGG-TSCCCC-CSEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccH-HHHHHhhcCCCCeEEEECc-----hHH-cCcccC-CcEE
Confidence 46999999999999999999885 678888888732 22333333 3589999994 333 345665 5555
No 233
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=79.90 E-value=1.5 Score=33.26 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=31.7
Q ss_pred ccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCC
Q 013189 405 ALTLVFVETKKGADALEHWLYMNGFPATTIHGDRT 439 (448)
Q Consensus 405 ~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~ 439 (448)
.+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 67999999999999999999999999888888875
No 234
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=79.86 E-value=1.1 Score=35.05 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=32.0
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRT 439 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~ 439 (448)
..+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 667999999999999999999999999988888753
No 235
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=79.74 E-value=0.96 Score=37.46 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=17.7
Q ss_pred hcCCCeeEeccCCCCcchhhh
Q 013189 180 IGGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 180 ~~g~d~li~a~TGsGKT~~~~ 200 (448)
..+.++++.+++|+|||....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 466789999999999998653
No 236
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=79.46 E-value=7.2 Score=39.50 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=31.4
Q ss_pred CeeEEEEecCCccCc-CCCHHHHHHHHHHcCCC--CCCCceEEEEeccCChHHHHHHHHhh
Q 013189 297 MIRYLALDEADRMLD-MGFEPQIRKIVQQMDMP--PPGMRQTMLFSATFPKEIQRLASDFL 354 (448)
Q Consensus 297 ~v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~--~~~~~q~i~~SAT~~~~v~~l~~~~l 354 (448)
.+++++||=+-++-. .....++..++..++.. .....-++.+.||...+....++.|.
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~ 435 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFH 435 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHH
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHH
Confidence 456788887765422 12333444444433211 11233477899998766666666664
No 237
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=79.06 E-value=1.5 Score=42.57 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=15.3
Q ss_pred cCCCeeEeccCCCCcchh
Q 013189 181 GGRDLMACAQTGSGKTAA 198 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~ 198 (448)
.+.-+++++|||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 445789999999999994
No 238
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=79.01 E-value=1.2 Score=34.48 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=32.4
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRT 439 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~ 439 (448)
..++||||.+-..+...+..|...|+++..+.|++.
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 667999999998999999999999999999988764
No 239
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=78.70 E-value=1 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.189 Sum_probs=18.5
Q ss_pred cCCCeeEeccCCCCcchhhhhhH
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPI 203 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpi 203 (448)
.++.+++++|+|+|||...+-.+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala 1448 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVI 1448 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 36899999999999999754433
No 240
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=78.26 E-value=4.2 Score=43.75 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=55.6
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhc-------ccCCcEEEEEECCCCHHHHHHHHhc---------CCcEEEeChhHHHHH
Q 013189 224 PLALILAPTRELSSQIHVEAKKFS-------YQTGVKVVVAYGGAPINQQLRELER---------GVDILVATPGRLVDL 287 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~-------~~~~~~~~~~~gg~~~~~~~~~l~~---------~~~Ilv~TP~~L~~~ 287 (448)
..+||.+|++.-+..+++.+.+.. ...++.+..++|+.+..++.+.+.. ...|||||. .
T Consensus 304 g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~-----i 378 (773)
T 2xau_A 304 GDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN-----I 378 (773)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----H
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----H
Confidence 469999999999999999887532 2357889999999998777655532 357999994 2
Q ss_pred HhcccccCCCeeEEEE
Q 013189 288 LERARVSLQMIRYLAL 303 (448)
Q Consensus 288 l~~~~~~l~~v~~lVl 303 (448)
+. ..+++..|.+||-
T Consensus 379 ae-~GidIp~v~~VId 393 (773)
T 2xau_A 379 AE-TSLTIDGIVYVVD 393 (773)
T ss_dssp HH-HTCCCTTEEEEEE
T ss_pred HH-hCcCcCCeEEEEe
Confidence 33 3567889987774
No 241
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=78.14 E-value=2.5 Score=44.70 Aligned_cols=68 Identities=10% Similarity=0.149 Sum_probs=47.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhc-CCcEEEeChhHHHHHHhcccccCCCeeEE
Q 013189 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYL 301 (448)
Q Consensus 223 ~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~~l 301 (448)
..++||+||+++-+..+++.+++. ++++..++|. ........+.. ..+|||||- .+. ..+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v~e-~GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----ISE-MGANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----GGG-TTCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----hhh-cceeeC-CcEE
Confidence 457999999999999999988875 6788888884 22222233333 479999993 233 356777 8776
Q ss_pred E
Q 013189 302 A 302 (448)
Q Consensus 302 V 302 (448)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 242
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=78.10 E-value=15 Score=34.38 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=15.0
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.++-+.+++++|+|||+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SSEEEEEECCTTTTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556778899999999853
No 243
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=77.98 E-value=1.5 Score=47.35 Aligned_cols=103 Identities=18% Similarity=0.256 Sum_probs=0.0
Q ss_pred CCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCC
Q 013189 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAP 262 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~ 262 (448)
+.+++.+|.|+|||+ .++.++...+..+..+.+..-
T Consensus 239 ~GILL~GPPGTGKT~--------------------------------------------LAraiA~elg~~~~~v~~~~l 274 (806)
T 3cf2_A 239 RGILLYGPPGTGKTL--------------------------------------------IARAVANETGAFFFLINGPEI 274 (806)
T ss_dssp CEEEEECCTTSCHHH--------------------------------------------HHHHHHTTTTCEEEEEEHHHH
T ss_pred CeEEEECCCCCCHHH--------------------------------------------HHHHHHHHhCCeEEEEEhHHh
Q ss_pred HHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCccCcCC----------CHHHHHHHHHHcCCCCCCC
Q 013189 263 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG----------FEPQIRKIVQQMDMPPPGM 332 (448)
Q Consensus 263 ~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~g----------f~~~i~~i~~~l~~~~~~~ 332 (448)
....... +-..+..+++... -..-.+|+|||+|.+.... ...++...+..+ ...
T Consensus 275 ~sk~~ge----------se~~lr~lF~~A~--~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~----~~~ 338 (806)
T 3cf2_A 275 MSKLAGE----------SESNLRKAFEEAE--KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL----KQR 338 (806)
T ss_dssp HSSCTTH----------HHHHHHHHHHHHT--TSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHC----CGG
T ss_pred hcccchH----------HHHHHHHHHHHHH--HcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcc----ccc
Q ss_pred ceEEEEeccCChH
Q 013189 333 RQTMLFSATFPKE 345 (448)
Q Consensus 333 ~q~i~~SAT~~~~ 345 (448)
.+++++-||-..+
T Consensus 339 ~~V~VIaaTN~~d 351 (806)
T 3cf2_A 339 AHVIVMAATNRPN 351 (806)
T ss_dssp GCEEEEEECSSTT
T ss_pred CCEEEEEecCChh
No 244
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=77.62 E-value=1.5 Score=47.81 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.4
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
..++++++++|+|||...
T Consensus 191 ~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCCEEEECTTSCHHHHH
T ss_pred CCceEEEcCCCCCHHHHH
Confidence 357999999999999854
No 245
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=76.53 E-value=4.8 Score=37.59 Aligned_cols=69 Identities=13% Similarity=0.216 Sum_probs=49.4
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhc----CCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER----GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.++||.+++++-+..+++.++ ++..++|+.+..+....+.. ..+|||+|. .+. ..+++..++
T Consensus 221 ~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~~~ 286 (337)
T 2z0m_A 221 KGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VAS-RGLDIPLVE 286 (337)
T ss_dssp SSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHH-TTCCCCCBS
T ss_pred CcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccc-cCCCccCCC
Confidence 459999999998887766554 35677888887665544432 479999994 333 467889999
Q ss_pred EEEEecC
Q 013189 300 YLALDEA 306 (448)
Q Consensus 300 ~lVlDEa 306 (448)
+||.-..
T Consensus 287 ~Vi~~~~ 293 (337)
T 2z0m_A 287 KVINFDA 293 (337)
T ss_dssp EEEESSC
T ss_pred EEEEecC
Confidence 9887443
No 246
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=76.45 E-value=2.2 Score=33.23 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=32.4
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC-eEEecCCCCH
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~-~~~iHg~~~q 440 (448)
..++||||.+-..+...+..|...|+. +..+.|++..
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 567999999999999999999999995 8888888654
No 247
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=76.38 E-value=3.1 Score=39.45 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=17.6
Q ss_pred CCCeeEeccCCCCcchhhhhhHH
Q 013189 182 GRDLMACAQTGSGKTAAFCFPII 204 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil 204 (448)
|.-+++.+++|+|||...+-.+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999986544443
No 248
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=75.66 E-value=2.8 Score=49.64 Aligned_cols=48 Identities=17% Similarity=0.023 Sum_probs=31.3
Q ss_pred HhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013189 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 179 i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~ 240 (448)
+..++++++++++|+|||...+..+...+.. +-+++++. .-++..+++
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~-------------Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-------------GKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT-------------TCCEEEEC-TTSCCCHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHc-------------CCeEEEEE-ccccHHHHH
Confidence 3367899999999999999766555544322 22366664 445555555
No 249
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=75.06 E-value=1.4 Score=42.92 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=20.2
Q ss_pred HhhhHhcCCC--eeEeccCCCCcchhh
Q 013189 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
.+..++.|.| +|+.++||||||...
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 3455678887 889999999999864
No 250
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=74.56 E-value=8.2 Score=37.93 Aligned_cols=20 Identities=15% Similarity=0.059 Sum_probs=16.2
Q ss_pred CCCeeEeccCCCCcchhhhh
Q 013189 182 GRDLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~l 201 (448)
|.-+.+.+++|+|||.....
T Consensus 178 Gei~~I~G~sGsGKTTLl~~ 197 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHT 197 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHH
Confidence 45688999999999986543
No 251
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=74.46 E-value=2.9 Score=37.15 Aligned_cols=37 Identities=22% Similarity=0.063 Sum_probs=28.1
Q ss_pred CHHHHhHhhhHhcCCCeeEeccCCCCcchhhhhhHHHHH
Q 013189 169 TPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 169 t~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lpil~~l 207 (448)
+.-|..++..+..|.-+.+.+|+|||||+. +-+|..+
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL--l~~l~Gl 45 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYL--AMAKAVQ 45 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHH--HHHHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHH--HHHHhcC
Confidence 445667777777888899999999999994 4455544
No 252
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=73.71 E-value=1.3 Score=44.42 Aligned_cols=26 Identities=19% Similarity=0.011 Sum_probs=19.2
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHH
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISG 206 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~ 206 (448)
.|.=+++.|++|+|||...+--+.+.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 44558999999999999755444443
No 253
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=73.56 E-value=8.1 Score=37.15 Aligned_cols=19 Identities=26% Similarity=0.099 Sum_probs=15.4
Q ss_pred CCeeEeccCCCCcchhhhh
Q 013189 183 RDLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~~l 201 (448)
+-+.+.+++|+|||.....
T Consensus 132 ~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578999999999986543
No 254
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=73.37 E-value=1.6 Score=41.72 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=19.9
Q ss_pred hhhHhcCCC--eeEeccCCCCcchhhh
Q 013189 176 IPISIGGRD--LMACAQTGSGKTAAFC 200 (448)
Q Consensus 176 i~~i~~g~d--~li~a~TGsGKT~~~~ 200 (448)
+..++.|.| +++.++||||||....
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEec
Confidence 345568887 8899999999998753
No 255
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=73.22 E-value=54 Score=29.72 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=23.8
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
...+.|||.+...|..+.+.|...|+.
T Consensus 186 ~~~~ai~~~~d~~a~g~~~al~~~g~~ 212 (305)
T 3g1w_A 186 PNLAGIFATEANGGVGVGDAVRLESRA 212 (305)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHTTCT
T ss_pred CCceEEEECCCcchhhHHHHHHhcCCC
Confidence 457899999999999999999999873
No 256
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=73.06 E-value=7.7 Score=40.52 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=47.0
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh-cCCcEEEeChhHHHHHHhcccccCCCeeEEE
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE-RGVDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lV 302 (448)
.++||.|+|++-|..+++.+++. ++++..+++.. .......+. ...+|||||. .+. ..+++. +++||
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~-R~~~l~~F~~g~~~VLVaTd-----v~~-rGiDi~-v~~VI 423 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKT-FDTEYPKTKLTDWDFVVTTD-----ISE-MGANFR-AGRVI 423 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTT-HHHHTTHHHHSCCSEEEECG-----GGG-TTCCCC-CSEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHH-HHHHHHhhcCCCcEEEEECc-----HHH-cCcccC-ceEEE
Confidence 46999999999999999999885 57788888753 222333333 3579999994 333 345674 77763
No 257
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=72.83 E-value=18 Score=36.93 Aligned_cols=104 Identities=12% Similarity=0.070 Sum_probs=53.7
Q ss_pred ceEEEEeccCChHHHHHHHHhhcC-cEE--EEeccccCcccceeEEEEEe-cc---------cchHHHHHHHHHHHHhcC
Q 013189 333 RQTMLFSATFPKEIQRLASDFLAN-YIF--LAVGRVGSSTDLIVQRVEFV-HE---------SDKRSHLMDLLHAQVANG 399 (448)
Q Consensus 333 ~q~i~~SAT~~~~v~~l~~~~l~~-~~~--i~v~~~~~~~~~i~q~~~~~-~~---------~~k~~~L~~ll~~~~~~~ 399 (448)
+.+|++|||+.+ +..+...+--+ ... +.....+++. ..+...++ .+ ..-...+.+.+......
T Consensus 316 ~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~- 391 (551)
T 3crv_A 316 LSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ- 391 (551)
T ss_dssp CEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH-
T ss_pred ceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh-
Confidence 679999999986 34444433222 221 0011122332 22222222 11 01134455555443321
Q ss_pred CCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHH
Q 013189 400 VHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 400 ~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~ 446 (448)
.++.+|||++|.+..+.+++. .+.++..=..+++..++.+.
T Consensus 392 ---~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~~~~~~~ 432 (551)
T 3crv_A 392 ---AKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSVEDLYSA 432 (551)
T ss_dssp ---CSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCCHHHHHHH
T ss_pred ---CCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCHHHHHHH
Confidence 266799999999999999973 34455443345666555443
No 258
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=72.67 E-value=3.8 Score=33.95 Aligned_cols=36 Identities=8% Similarity=0.073 Sum_probs=31.4
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCC-CeEEecCCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGF-PATTIHGDRT 439 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~-~~~~iHg~~~ 439 (448)
..++||||.+-..+...+..|...|+ +|..|.|++.
T Consensus 80 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 80 ERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp -CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 56799999998889999999999999 5999999874
No 259
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=72.67 E-value=2.5 Score=40.99 Aligned_cols=19 Identities=37% Similarity=0.349 Sum_probs=15.9
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.|.-+++.+++|+|||+..
T Consensus 60 ~G~i~~I~GppGsGKSTLa 78 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLA 78 (356)
T ss_dssp TTEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999854
No 260
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=72.61 E-value=2.4 Score=41.25 Aligned_cols=72 Identities=14% Similarity=0.130 Sum_probs=46.8
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh---c-CCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.++||.+++++-+..+++.+.+. ++.+..++|+.+..++...+. . ..+|||+|. . -...+++..++
T Consensus 281 ~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip~v~ 350 (414)
T 3eiq_A 281 TQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----L-LARGIDVQQVS 350 (414)
T ss_dssp SSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----S-CC--CCGGGCS
T ss_pred CcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----c-cccCCCccCCC
Confidence 35999999999999999888774 577888899887665544433 2 368999994 1 22356778888
Q ss_pred EEEEec
Q 013189 300 YLALDE 305 (448)
Q Consensus 300 ~lVlDE 305 (448)
+||.-.
T Consensus 351 ~Vi~~~ 356 (414)
T 3eiq_A 351 LVINYD 356 (414)
T ss_dssp CEEESS
T ss_pred EEEEeC
Confidence 887533
No 261
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=72.60 E-value=42 Score=30.30 Aligned_cols=185 Identities=13% Similarity=0.096 Sum_probs=87.2
Q ss_pred EEEEcCcH--HHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHH----HhcCCcEEEeChhHH-HHHHhcccccCCCe
Q 013189 226 ALILAPTR--ELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE----LERGVDILVATPGRL-VDLLERARVSLQMI 298 (448)
Q Consensus 226 ~lil~Ptr--eLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~----l~~~~~Ilv~TP~~L-~~~l~~~~~~l~~v 298 (448)
+-+++|.. ..-.++...+++.+...++.+.++........+... +..++|-+|..|... ...++. +.-..+
T Consensus 11 Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~--~~~~~i 88 (291)
T 3egc_A 11 VGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEGEHDYLRT--ELPKTF 88 (291)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSSCCHHHHH--SSCTTS
T ss_pred EEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHHH--hhccCC
Confidence 44444542 233445555555555567888877766665544332 235677666555432 222221 112345
Q ss_pred eEEEEecCCcc-----CcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCCh-HHHHHHH---HhhcCcEEEEeccccCcc
Q 013189 299 RYLALDEADRM-----LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK-EIQRLAS---DFLANYIFLAVGRVGSST 369 (448)
Q Consensus 299 ~~lVlDEah~l-----l~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~-~v~~l~~---~~l~~~~~i~v~~~~~~~ 369 (448)
-+|++|....- ...........+.++|... ..+++.+++..... ....-.. +.+.+. +...
T Consensus 89 PvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--------g~~~ 158 (291)
T 3egc_A 89 PIVAVNRELRIPGCGAVLSENVRGARTAVEYLIAR--GHTRIGAIVGSAGLMTSRERLKGFRAAMSAA--------GLPV 158 (291)
T ss_dssp CEEEESSCCCCTTCEEEEECHHHHHHHHHHHHHHT--TCCSEEEECSCTTSHHHHHHHHHHHHHHHHT--------TCCC
T ss_pred CEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHc--CCCEEEEEeCCCCCcCHHHHHHHHHHHHHHc--------CCCC
Confidence 56666643220 1112334444455554221 34567777765422 1111111 122211 0000
Q ss_pred cceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 370 DLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 370 ~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..............-...+.++|... ..++-|||.+...|..+.+.|...|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~ai~~~~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 159 RQEWIAAGGVRADNGRDGAIKVLTGA--------DRPTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp CGGGEEC------CCHHHHHHHHTC---------CCCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred CHHHeEeCCCChhHHHHHHHHHHhCC--------CCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 00000000111122234455555432 456789999999999999999988764
No 262
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=72.41 E-value=4.3 Score=31.72 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=32.2
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCH
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
..++||||.+-..+...+..|...|+....+.|++..
T Consensus 56 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~~ 92 (110)
T 2k0z_A 56 DKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVYD 92 (110)
T ss_dssp SSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGGG
T ss_pred CCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHHH
Confidence 6779999999999999999999999976778888653
No 263
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=72.14 E-value=2.4 Score=42.06 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.0
Q ss_pred cCCCeeEeccCCCCcchh
Q 013189 181 GGRDLMACAQTGSGKTAA 198 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~ 198 (448)
.+.-+++++|||||||+.
T Consensus 166 ~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 344589999999999994
No 264
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=71.99 E-value=1.8 Score=42.13 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=19.3
Q ss_pred hhhHhcCCC--eeEeccCCCCcchhh
Q 013189 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 176 i~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
+..++.|.| +|+.++||||||...
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 445668887 889999999999764
No 265
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=71.81 E-value=4.9 Score=38.87 Aligned_cols=22 Identities=27% Similarity=0.137 Sum_probs=17.7
Q ss_pred cCCCeeEeccCCCCcchhhhhh
Q 013189 181 GGRDLMACAQTGSGKTAAFCFP 202 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lp 202 (448)
.++-+++.++.|+|||...+-.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~l 83 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQV 83 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4677999999999999975443
No 266
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=71.80 E-value=12 Score=39.54 Aligned_cols=73 Identities=21% Similarity=0.259 Sum_probs=55.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHH---HHHHHHhc---CCcEEEeChhHHHHHHhcccccCCCee
Q 013189 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPIN---QQLRELER---GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 226 ~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~l~~---~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.+|+++++.-+..+++.+++. ++.+..++|+.+.. .+.+.+.. ..+|||||- .+ ...+++ .++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~-e~GlDi-~v~ 391 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AI-GMGLNL-SIR 391 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GG-GSSCCC-CBS
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HH-HCCcCc-Ccc
Confidence 467799999888888888874 67889999999877 44555553 379999994 22 346688 899
Q ss_pred EEEEecCCcc
Q 013189 300 YLALDEADRM 309 (448)
Q Consensus 300 ~lVlDEah~l 309 (448)
+||.-.+.+.
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9999887654
No 267
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=71.62 E-value=3.2 Score=39.89 Aligned_cols=21 Identities=19% Similarity=-0.105 Sum_probs=16.5
Q ss_pred CCCeeEeccCCCCcchhhhhh
Q 013189 182 GRDLMACAQTGSGKTAAFCFP 202 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lp 202 (448)
|.-+++.+++|+|||...+-.
T Consensus 122 G~i~~I~G~~GsGKTtla~~l 142 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTL 142 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456899999999999865433
No 268
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=71.54 E-value=1.9 Score=41.33 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=20.4
Q ss_pred HhhhHhcCCC--eeEeccCCCCcchhh
Q 013189 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
.+..++.|.| +++.++||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4556678888 889999999999864
No 269
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=71.52 E-value=2.4 Score=32.96 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=32.6
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC-eEEecCCCCH
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~-~~~iHg~~~q 440 (448)
..+++|||.+-..+...+..|...|+. +..+.|++..
T Consensus 58 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 58 DTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 677999999988999999999999995 8889988754
No 270
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=71.50 E-value=4.7 Score=41.73 Aligned_cols=42 Identities=31% Similarity=0.351 Sum_probs=30.3
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEecc
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
+.+-+++++||.-.-+|...+..+.+.+..+. ..+ ++++.+-
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~----~~~-tvi~itH 537 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQ----KNK-TVLVIAH 537 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHc----CCC-EEEEEec
Confidence 56778999999999999777777777777762 233 5555554
No 271
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=71.47 E-value=1.9 Score=42.14 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=19.2
Q ss_pred hhhHhcCCC--eeEeccCCCCcchhh
Q 013189 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 176 i~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
+..++.|.| +|+.++||||||...
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 344668887 789999999999864
No 272
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=71.42 E-value=1.9 Score=41.67 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=18.8
Q ss_pred hhHhcCCC--eeEeccCCCCcchhh
Q 013189 177 PISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 177 ~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
..++.|.| +++.++||||||...
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEEe
Confidence 34567887 889999999999864
No 273
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=71.35 E-value=2 Score=41.53 Aligned_cols=25 Identities=40% Similarity=0.601 Sum_probs=20.7
Q ss_pred HhhhHhcCCC--eeEeccCCCCcchhh
Q 013189 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
.+..++.|.| +|+.++||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4566778888 789999999999864
No 274
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=71.20 E-value=2 Score=41.72 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=18.9
Q ss_pred hhHhcCCC--eeEeccCCCCcchhh
Q 013189 177 PISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 177 ~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
..++.|.| +|+.++||||||...
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCcceEEEECCCCCCcceEe
Confidence 34567887 889999999999864
No 275
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=71.17 E-value=1.9 Score=41.69 Aligned_cols=24 Identities=42% Similarity=0.551 Sum_probs=19.4
Q ss_pred hhhHhcCCC--eeEeccCCCCcchhh
Q 013189 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 176 i~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
+..++.|.| +|+.++||||||...
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 345568887 889999999999865
No 276
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=71.14 E-value=1.9 Score=41.84 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=19.9
Q ss_pred HhhhHhcCCC--eeEeccCCCCcchhh
Q 013189 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
.+..++.|.| +|+.++||||||...
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3445678888 788999999999874
No 277
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=71.10 E-value=1.7 Score=42.29 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=20.9
Q ss_pred hHhcCCCeeEeccCCCCcchhhhhhHHHHH
Q 013189 178 ISIGGRDLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 178 ~i~~g~d~li~a~TGsGKT~~~~lpil~~l 207 (448)
.+..|..++++++||||||+. +-+|..+
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTl--l~~l~~~ 198 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTL--MKALMQE 198 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHH--HHHHHTT
T ss_pred HHhcCCEEEEECCCCCCHHHH--HHHHHhc
Confidence 345788999999999999994 4444433
No 278
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=71.09 E-value=2.8 Score=44.19 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=50.6
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHh--cccCCcEEEEEECC--------CCHHHHHHHHhc----CCcEEEeChhHHHHHH
Q 013189 223 YPLALILAPTRELSSQIHVEAKKF--SYQTGVKVVVAYGG--------APINQQLRELER----GVDILVATPGRLVDLL 288 (448)
Q Consensus 223 ~~~~lil~PtreLa~qi~~~~~~~--~~~~~~~~~~~~gg--------~~~~~~~~~l~~----~~~Ilv~TP~~L~~~l 288 (448)
..++||.++++..+..+.+.++.. ....++++..++|+ .+..++...+.. ..+|||||- +
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~------~ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT------V 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC------S
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc------c
Confidence 356999999999999999999874 22236888888998 776666554432 478999993 2
Q ss_pred hcccccCCCeeEEEE
Q 013189 289 ERARVSLQMIRYLAL 303 (448)
Q Consensus 289 ~~~~~~l~~v~~lVl 303 (448)
-...+++..+++||.
T Consensus 474 ~~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 474 AEEGLDIKECNIVIR 488 (699)
T ss_dssp CCTTSCCCSCCCCEE
T ss_pred cccCCccccCCEEEE
Confidence 224567888888874
No 279
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=71.02 E-value=4.8 Score=38.37 Aligned_cols=58 Identities=22% Similarity=0.209 Sum_probs=47.9
Q ss_pred ecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHH
Q 013189 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQ 441 (448)
Q Consensus 379 ~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~ 441 (448)
+..+.|...|-++|...... +.++|||++..+..+.|.++|...+++..-+.|.....
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~-----~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~ 162 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEY-----ETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS 162 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTS-----CEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--
T ss_pred HHcCccHHHHHHHHHHHHhC-----CCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh
Confidence 34678898888888876532 77999999999999999999999999999999885443
No 280
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=70.95 E-value=2 Score=41.82 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=18.9
Q ss_pred hhHhcCCC--eeEeccCCCCcchhh
Q 013189 177 PISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 177 ~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
..++.|.| +++.++||||||...
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceEE
Confidence 34567887 789999999999874
No 281
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=70.93 E-value=1.4 Score=38.99 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=29.6
Q ss_pred eeEEEEecCCccCcCC--CHHHHHHHHHHcCCCCCCCceEEEEeccCChHHH
Q 013189 298 IRYLALDEADRMLDMG--FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 298 v~~lVlDEah~ll~~g--f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
-.+|||||||.++... ..+. .+++..+........++|+++.. +..+.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~-~rll~~l~~~r~~~~~iil~tq~-~~~l~ 137 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKI-PENVQWLNTHRHQGIDIFVLTQG-PKLLD 137 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCC-CHHHHGGGGTTTTTCEEEEEESC-GGGBC
T ss_pred ceEEEEEChhhhccCccccchh-HHHHHHHHhcCcCCeEEEEECCC-HHHHh
Confidence 4579999999985321 1111 24556665554566788888877 44433
No 282
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=70.85 E-value=1.8 Score=41.85 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=19.3
Q ss_pred hhhHhcCCC--eeEeccCCCCcchhh
Q 013189 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 176 i~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
+..++.|.| +|+.++||||||...
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 344567887 789999999999974
No 283
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=70.83 E-value=5.3 Score=39.86 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=46.5
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhc-CCcEEEeChhHHHHHHhcccccCCCeeEEE
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lV 302 (448)
.++||.+|++.-|.++++.+++. ++++..+++... ......+.. ..+|||||- .+. ..+++.. ++||
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~-----v~~-~GiDip~-~~VI 256 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISE-MGANFRA-GRVI 256 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECG-----GGG-SSCCCCC-SEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHH-HHHHHhhccCCceEEEECC-----HHH-hCcCCCC-CEEE
Confidence 36999999999999999998874 567777777654 222223333 479999993 333 4567777 6665
No 284
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=70.79 E-value=2 Score=41.70 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=20.1
Q ss_pred HhhhHhcCCC--eeEeccCCCCcchhh
Q 013189 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
.+..++.|.| +++.++||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3445668888 789999999999875
No 285
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=70.73 E-value=2 Score=41.62 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=18.9
Q ss_pred hhHhcCCC--eeEeccCCCCcchhh
Q 013189 177 PISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 177 ~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
..++.|.| +++.++||||||...
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceeee
Confidence 34567887 789999999999874
No 286
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=70.52 E-value=1.8 Score=42.01 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=19.4
Q ss_pred hhhHhcCCC--eeEeccCCCCcchhh
Q 013189 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 176 i~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
+..++.|.| +|+.++||||||...
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEE
Confidence 445668887 789999999999864
No 287
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=70.20 E-value=2 Score=42.17 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=18.3
Q ss_pred hHhcCCC--eeEeccCCCCcchhh
Q 013189 178 ISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 178 ~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
.++.|.| +|+.++||||||...
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HhhcCceeeEeeecCCCCCCCeEe
Confidence 4567887 789999999999864
No 288
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=70.07 E-value=2 Score=41.57 Aligned_cols=25 Identities=40% Similarity=0.602 Sum_probs=20.9
Q ss_pred HhhhHhcCCC--eeEeccCCCCcchhh
Q 013189 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
.+..++.|.| +|+.++||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5566778888 789999999999875
No 289
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=70.04 E-value=1.9 Score=42.11 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=19.2
Q ss_pred hhhHhcCCC--eeEeccCCCCcchhh
Q 013189 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 176 i~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
+..++.|.| +|+.++||||||...
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCcceec
Confidence 334567887 889999999999864
No 290
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=69.99 E-value=4.7 Score=29.70 Aligned_cols=35 Identities=11% Similarity=0.204 Sum_probs=29.8
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC-eEEecCCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRT 439 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~-~~~iHg~~~ 439 (448)
..+++|||.+-..+...+..|...|++ +..+ |++.
T Consensus 41 ~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 41 NDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 678999999999999999999999996 5556 7664
No 291
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=69.82 E-value=1.9 Score=42.59 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=18.7
Q ss_pred hhHhcCCC--eeEeccCCCCcchhh
Q 013189 177 PISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 177 ~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
..++.|.| +|+.++||||||...
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeEe
Confidence 34567877 889999999999874
No 292
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=69.70 E-value=2.9 Score=34.66 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=32.4
Q ss_pred CccEEEEeCch--HHHHHHHHHHHHCCCCeEEecCCCCH
Q 013189 404 QALTLVFVETK--KGADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~~IIF~~t~--~~a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
..++||||.+- ..+...+..|...|+++..+.|++..
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEY 110 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHH
Confidence 56799999997 68899999999999999999998754
No 293
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=69.63 E-value=2.2 Score=41.21 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=19.3
Q ss_pred hhhHhcCCC--eeEeccCCCCcchhh
Q 013189 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 176 i~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
+..++.|.| +|+.++||||||...
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 345568887 789999999999864
No 294
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.60 E-value=1.7 Score=43.43 Aligned_cols=55 Identities=11% Similarity=0.158 Sum_probs=35.9
Q ss_pred cCCCCcccCCCCHHHHHHHHHC---CCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhh
Q 013189 142 PAVNTFAEIDLGEALNLNIRRC---KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~l~~~---~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 199 (448)
.|..+|++.+--+.+++.|.+. .+..|.-++..-++ .-+-+++.+|.|||||+..
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 3556899998777777776643 12233333333332 2367999999999999853
No 295
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=69.43 E-value=2.6 Score=37.73 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=30.9
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
.|.-+++.+++|+|||...+--+.+.+...+ -.++|++- -+...++...+..+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~------------~~v~~~s~-E~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG------------EPGVFVTL-EERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHC------------CCEEEEES-SSCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcC------------CCceeecc-cCCHHHHHHHHHHc
Confidence 3567999999999999865443444333321 12555542 23445555555554
No 296
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=69.34 E-value=3 Score=33.76 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=32.8
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC-eEEecCCCCH
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~-~~~iHg~~~q 440 (448)
..++||||.+-..+...+..|...|+. +..|.|++..
T Consensus 82 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 82 SDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp TSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred CCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 678999999988999999999999995 8889998754
No 297
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=69.09 E-value=2.1 Score=42.29 Aligned_cols=25 Identities=40% Similarity=0.601 Sum_probs=20.8
Q ss_pred HhhhHhcCCC--eeEeccCCCCcchhh
Q 013189 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
.+..++.|.| +|+.++||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 4566778888 789999999999875
No 298
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=68.90 E-value=2.1 Score=42.01 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=19.2
Q ss_pred hhhHhcCCC--eeEeccCCCCcchhh
Q 013189 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 176 i~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
+..++.|.| +|+.++||||||...
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 334567877 889999999999874
No 299
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=68.88 E-value=1.9 Score=42.02 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=20.3
Q ss_pred HhhhHhcCCC--eeEeccCCCCcchhh
Q 013189 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
.+..++.|.| +|+.++||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4556678887 789999999999874
No 300
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=68.82 E-value=2.3 Score=42.50 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=19.5
Q ss_pred hhhHhcCCC--eeEeccCCCCcchhh
Q 013189 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 176 i~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
+..++.|.| +|+.++||||||...
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 345568887 889999999999865
No 301
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=68.64 E-value=2.2 Score=34.35 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=32.1
Q ss_pred CccEEEEeCchHH--HHHHHHHHHHCCCCeEEecCCCCH
Q 013189 404 QALTLVFVETKKG--ADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~~IIF~~t~~~--a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
..++||||.+-.. +...+..|...|+++..+.|++..
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~ 109 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEG 109 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHH
Confidence 5679999999777 899999999999998888888654
No 302
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=68.45 E-value=3.3 Score=33.96 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=32.7
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCC-CeEEecCCCCH
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGF-PATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~-~~~~iHg~~~q 440 (448)
..++||||.+-..+...+..|...|+ +|..+.|++..
T Consensus 82 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 82 EKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119 (137)
T ss_dssp TSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHH
Confidence 67899999999999999999999999 58899998754
No 303
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=68.33 E-value=3.3 Score=33.76 Aligned_cols=37 Identities=8% Similarity=0.005 Sum_probs=32.5
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC-eEEecCCCCH
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~-~~~iHg~~~q 440 (448)
..++||||.+-..+..++..|...|+. |..+.|++..
T Consensus 86 ~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 123 (139)
T 2hhg_A 86 DKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGA 123 (139)
T ss_dssp SSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 667999999999999999999999996 9999988654
No 304
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=68.33 E-value=2.2 Score=42.19 Aligned_cols=25 Identities=40% Similarity=0.599 Sum_probs=20.6
Q ss_pred HhhhHhcCCC--eeEeccCCCCcchhh
Q 013189 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
.|..++.|.| +|+.++||||||...
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4556778888 789999999999874
No 305
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=68.23 E-value=2.3 Score=41.59 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=20.3
Q ss_pred HhhhHhcCCC--eeEeccCCCCcchhh
Q 013189 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
.+..++.|.| +|+.++||||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4556678887 889999999999865
No 306
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=68.22 E-value=1.9 Score=41.28 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=20.6
Q ss_pred HhcCCCeeEeccCCCCcchhhhhhHHHHH
Q 013189 179 SIGGRDLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 179 i~~g~d~li~a~TGsGKT~~~~lpil~~l 207 (448)
+..|..+.++++||||||+ ++-+|..+
T Consensus 168 i~~g~~v~i~G~~GsGKTT--ll~~l~g~ 194 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT--YIKSIMEF 194 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH--HHHHGGGG
T ss_pred ccCCCEEEEECCCCCCHHH--HHHHHhCC
Confidence 3478899999999999999 34444444
No 307
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=67.52 E-value=2.6 Score=36.84 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=15.1
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.|+-+.+++|+|+|||+..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999943
No 308
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=67.46 E-value=6.1 Score=41.62 Aligned_cols=67 Identities=16% Similarity=0.183 Sum_probs=49.5
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhcCCcEEEeChhHHHHHHhcccccCCCeeEE
Q 013189 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYL 301 (448)
Q Consensus 222 ~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~l 301 (448)
...++||.++|++-+.++++.+++. ++++..++|+.+..+. ...+.+|||||. .+.. .+++. |++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd-----Vaer-GIDId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALMT-GYTGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT-----THHH-HCCCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHHc-cCCCC-CcEE
Confidence 3457999999999999999998874 6789999999876532 234569999994 3333 34564 8876
Q ss_pred E
Q 013189 302 A 302 (448)
Q Consensus 302 V 302 (448)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 309
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=67.37 E-value=3.8 Score=33.43 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=32.5
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC-eEEecCCCCH
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~-~~~iHg~~~q 440 (448)
..++||||.+-..+...+..|...|+. +..|.|++..
T Consensus 91 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 128 (139)
T 3d1p_A 91 AKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMND 128 (139)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHHH
T ss_pred CCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 567999999999999999999999995 8888888653
No 310
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=67.17 E-value=70 Score=28.60 Aligned_cols=174 Identities=8% Similarity=0.035 Sum_probs=92.6
Q ss_pred EEEEcCc--HHHHHHHHHHHHHhcccCCcE-EEEEECCCCHHHHHHH----HhcCCcEEEeChhHHHHHHhcccccCCCe
Q 013189 226 ALILAPT--RELSSQIHVEAKKFSYQTGVK-VVVAYGGAPINQQLRE----LERGVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 226 ~lil~Pt--reLa~qi~~~~~~~~~~~~~~-~~~~~gg~~~~~~~~~----l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v 298 (448)
+-+++|. ...-.++..-+++.+...++. +.++........+... +.+++|-+|..|.. +. .+.-..+
T Consensus 13 Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~----~~--~~~~~~i 86 (277)
T 3hs3_A 13 IGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSAFT----IP--PNFHLNT 86 (277)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECCC----CC--TTCCCSS
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcchH----HH--HHHhCCC
Confidence 4444554 223445555555555556788 6666655555444332 24578877766611 11 1223456
Q ss_pred eEEEEecC--Cc---cCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChH-HHHHHHHh---hcCc-EEEEeccccCc
Q 013189 299 RYLALDEA--DR---MLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE-IQRLASDF---LANY-IFLAVGRVGSS 368 (448)
Q Consensus 299 ~~lVlDEa--h~---ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~-v~~l~~~~---l~~~-~~i~v~~~~~~ 368 (448)
-+|++|.. +. ..............++|. ...+++.+++...... ...-..-| +... +.+.
T Consensus 87 PvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~---~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~------- 156 (277)
T 3hs3_A 87 PLVMYDSANINDDIVRIVSNNTKGGKESIKLLS---KKIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYL------- 156 (277)
T ss_dssp CEEEESCCCCCSSSEEEEECHHHHHHHHHHTSC---TTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEE-------
T ss_pred CEEEEcccccCCCCEEEEEChHHHHHHHHHHHH---hCCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCC-------
Confidence 77888755 11 112234556667777775 3456788887654221 11111112 2211 1100
Q ss_pred ccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 369 TDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 369 ~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
.. ....+.+ ...+.++|... ..++-|||.+...|..+.+.|...|+.
T Consensus 157 -----~~-~~~~~~~-~~~~~~~l~~~--------~~~~ai~~~~d~~A~g~~~al~~~g~~ 203 (277)
T 3hs3_A 157 -----LE-ETPENNP-YISAQSALNKS--------NQFDAIITVNDLYAAEIIKEAKRRNLK 203 (277)
T ss_dssp -----EE-ECCSSCH-HHHHHHHHHTG--------GGCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred -----CC-CccCCch-HHHHHHHHcCC--------CCCCEEEECCHHHHHHHHHHHHHcCCC
Confidence 00 1111112 45566666543 446789999999999999999998874
No 311
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=66.94 E-value=45 Score=29.63 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=22.9
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGF 429 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~ 429 (448)
.....|||.+...|..+.+.|...|+
T Consensus 186 ~~~~ai~~~~d~~a~g~~~al~~~g~ 211 (276)
T 3ksm_A 186 PTIDGLFTPNESTTIGALVAIRQSGM 211 (276)
T ss_dssp SCCCEEECCSHHHHHHHHHHHHHTTC
T ss_pred CCceEEEECCchhhhHHHHHHHHcCC
Confidence 45689999999999999999999986
No 312
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=66.49 E-value=1.5 Score=45.19 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=25.5
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDR 438 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~ 438 (448)
++.+||||+|...++.+++.|.. ++ ..+++..
T Consensus 384 ~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~ 415 (540)
T 2vl7_A 384 SKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK 415 (540)
T ss_dssp SSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT
T ss_pred CCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC
Confidence 56799999999999999998864 33 4567765
No 313
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=66.43 E-value=1.2 Score=50.96 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=25.4
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+++-+++||||+=--+|..-+..+.+.+..+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~ 600 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKA 600 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHH
Confidence 5777899999999989887777777777666
No 314
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=66.20 E-value=4.2 Score=33.06 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=31.9
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC-eEEecCCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRT 439 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~-~~~iHg~~~ 439 (448)
..++||||.+=..+...+..|...|+. |..+.|++.
T Consensus 74 ~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 74 NTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 578999999988899999999999995 889999883
No 315
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=65.97 E-value=2.1 Score=36.81 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=16.0
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.|+-+++++|+|+|||+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999943
No 316
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=65.66 E-value=1.3 Score=44.58 Aligned_cols=70 Identities=21% Similarity=0.289 Sum_probs=0.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHh---c-CCcEEEeChhHHHHHHhcccccCCCe
Q 013189 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 223 ~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~TP~~L~~~l~~~~~~l~~v 298 (448)
..++||.|+++.-|..+++.+.+. ++.+..++|+.+..+....+. . ..+|||||. .+. ..+++..+
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~-~GlDip~v 402 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA-RGIDVEQV 402 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----ccc-cCCccccC
Confidence 357999999999999998888774 567888888877655443332 2 378999993 222 35678888
Q ss_pred eEEE
Q 013189 299 RYLA 302 (448)
Q Consensus 299 ~~lV 302 (448)
.+||
T Consensus 403 ~~VI 406 (479)
T 3fmp_B 403 SVVI 406 (479)
T ss_dssp ----
T ss_pred CEEE
Confidence 8876
No 317
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=65.35 E-value=36 Score=33.68 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.5
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
+.+++++++|+|||+..
T Consensus 100 ~vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTA 116 (432)
T ss_dssp CCEEEECCSSSSTTHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999854
No 318
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=65.02 E-value=23 Score=37.32 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=52.7
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhccc--------------------------------CCcEEEEEECCCCHHHHHHHHh
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQ--------------------------------TGVKVVVAYGGAPINQQLRELE 271 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~--------------------------------~~~~~~~~~gg~~~~~~~~~l~ 271 (448)
..+||.+|++.-+..++..+.+.... ....+..++++.+..++.....
T Consensus 253 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~ 332 (715)
T 2va8_A 253 GQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEE 332 (715)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHH
Confidence 45999999999999999888764321 0124778899998876654443
Q ss_pred ----cCCcEEEeChhHHHHHHhcccccCCCeeEEEE
Q 013189 272 ----RGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 272 ----~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVl 303 (448)
....|||||. .+ ...+++..+.+||.
T Consensus 333 ~f~~g~~~vlvaT~-----~l-~~Gidip~~~~VI~ 362 (715)
T 2va8_A 333 GFRQRKIKVIVATP-----TL-AAGVNLPARTVIIG 362 (715)
T ss_dssp HHHTTCSCEEEECG-----GG-GGSSCCCBSEEEEC
T ss_pred HHHcCCCeEEEECh-----HH-hcccCCCceEEEEe
Confidence 2479999993 22 34678888887664
No 319
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=64.12 E-value=5.3 Score=32.88 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=31.9
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC-eEEecCCCCH
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~-~~~iHg~~~q 440 (448)
..++||||.+-..+...+..|...|+. +..+.|++..
T Consensus 56 ~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~ 93 (141)
T 3ilm_A 56 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 93 (141)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHHH
T ss_pred CCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 567999999999999999999999995 8888887643
No 320
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=63.93 E-value=4.2 Score=39.63 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=17.6
Q ss_pred cCCCeeEeccCCCCcchhhhh
Q 013189 181 GGRDLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~l 201 (448)
.+.+++++++||+|||.....
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~ 54 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM 54 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHH
Confidence 567899999999999986544
No 321
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=63.56 E-value=2.7 Score=41.01 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=19.8
Q ss_pred hcCCCeeEeccCCCCcchhhhhhHHHHHh
Q 013189 180 IGGRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 180 ~~g~d~li~a~TGsGKT~~~~lpil~~l~ 208 (448)
..|.-++++++||||||+. +-+|..++
T Consensus 134 ~~g~~i~ivG~~GsGKTTl--l~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT--IASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH--HHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHHhhc
Confidence 3567799999999999994 44444444
No 322
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=62.55 E-value=5 Score=40.77 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=21.4
Q ss_pred HhHhhhHhcCCCeeEeccCCCCcchhh
Q 013189 173 RHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 173 ~~~i~~i~~g~d~li~a~TGsGKT~~~ 199 (448)
..++-.+..+.++++.+|+|+|||...
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 344445667899999999999999854
No 323
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=62.48 E-value=11 Score=36.02 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=50.1
Q ss_pred CeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCH
Q 013189 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPI 263 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~ 263 (448)
-+++.++.|+|||...+-. +....+.. .+.+++++..--.+. +. .++++....
T Consensus 30 iteI~G~pGsGKTtL~Lq~-~~~~~~~g----------~g~~vlyId~E~s~~-~~--ra~~lGvd~------------- 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTM-VSSYMRQY----------PDAVCLFYDSEFGIT-PA--YLRSMGVDP------------- 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHH-HHHHHHHC----------TTCEEEEEESSCCCC-HH--HHHHTTCCG-------------
T ss_pred eEEEECCCCCCHHHHHHHH-HHHHHhcC----------CCceEEEEeccchhh-HH--HHHHhCCCH-------------
Confidence 4889999999999865443 33333220 123577776544432 22 355543211
Q ss_pred HHHHHHHhcCCcEEEeChhHHHHH-H---hcc-cccCCCeeEEEEecCCccC
Q 013189 264 NQQLRELERGVDILVATPGRLVDL-L---ERA-RVSLQMIRYLALDEADRML 310 (448)
Q Consensus 264 ~~~~~~l~~~~~Ilv~TP~~L~~~-l---~~~-~~~l~~v~~lVlDEah~ll 310 (448)
-++++..|..+.+. + +.. .+.-..+++||||=+..|.
T Consensus 83 ----------d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 ----------ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp ----------GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred ----------HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 13555555444333 2 111 1233568999999999885
No 324
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=62.17 E-value=5.6 Score=38.25 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=16.4
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
....+++.+|+|+|||...
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999964
No 325
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=61.93 E-value=3.9 Score=37.25 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=16.4
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.+..+++.+++|+|||...
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4678999999999999854
No 326
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=61.78 E-value=89 Score=27.94 Aligned_cols=38 Identities=11% Similarity=-0.024 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCc--cEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 385 RSHLMDLLHAQVANGVHGKQA--LTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 385 ~~~L~~ll~~~~~~~~~~~~~--~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
...+.++|... .. ++-|||.+...|..+.+.|...|+.
T Consensus 187 ~~~~~~~l~~~--------~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 226 (298)
T 3tb6_A 187 LEKVKATLEKN--------SKHMPTAILCYNDEIALKVIDMLREMDLK 226 (298)
T ss_dssp HHHHHHHHHHT--------TTSCCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcC--------CCCCCeEEEEeCcHHHHHHHHHHHHcCCC
Confidence 45566666654 33 6899999999999999999998864
No 327
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=61.61 E-value=5.6 Score=41.86 Aligned_cols=78 Identities=18% Similarity=0.188 Sum_probs=44.1
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEEC--------CCCHHHHHHHH---h--cCCcEEEeChhHHHHHHhc
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYG--------GAPINQQLREL---E--RGVDILVATPGRLVDLLER 290 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~g--------g~~~~~~~~~l---~--~~~~Ilv~TP~~L~~~l~~ 290 (448)
.++||.++++.-+..+++.++.......+++..++| +.+..++...+ . ...+|||||- . -.
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~-----v-~~ 472 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS-----V-AD 472 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE-----S-SC
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-----h-hh
Confidence 469999999999999999998864333367777754 66554444333 2 2478999992 2 23
Q ss_pred ccccCCCeeEEEEecCC
Q 013189 291 ARVSLQMIRYLALDEAD 307 (448)
Q Consensus 291 ~~~~l~~v~~lVlDEah 307 (448)
..+++..+++||.=+..
T Consensus 473 ~GiDip~v~~VI~~d~p 489 (696)
T 2ykg_A 473 EGIDIAQCNLVILYEYV 489 (696)
T ss_dssp CC---CCCSEEEEESCC
T ss_pred cCCcCccCCEEEEeCCC
Confidence 45788999998865443
No 328
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=61.48 E-value=13 Score=37.63 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=18.5
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHH
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIIS 205 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~ 205 (448)
.|.=+++.+++|+|||...+--+.+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHH
Confidence 4556899999999999965444443
No 329
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=61.30 E-value=7.2 Score=45.52 Aligned_cols=123 Identities=18% Similarity=0.250 Sum_probs=68.9
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCC
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGA 261 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~ 261 (448)
|+-+.+.+|.|||||+.. ++++....+. +..++++.+--+|.... ++++.-..
T Consensus 1431 g~~iei~g~~~sGkttl~-~~~~a~~~~~------------g~~~~~i~~e~~~~~~~---~~~~Gv~~----------- 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLT-LQVIAAAQRE------------GKTCAFIDAEHALDPIY---ARKLGVDI----------- 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHHH-HHHHHHHHHT------------TCCEEEECTTSCCCHHH---HHHTTCCG-----------
T ss_pred CCEEEEEcCCCCCHHHHH-HHHHHHHHhc------------CCeEEEEecCCCCCHHH---HHHcCCCH-----------
Confidence 366899999999999974 4455443332 24588887765554432 55543211
Q ss_pred CHHHHHHHHhcCCcEEEeChhHHHHHHhc--ccccCCCeeEEEEecCCccCcCC-----------------CHHHHHHHH
Q 013189 262 PINQQLRELERGVDILVATPGRLVDLLER--ARVSLQMIRYLALDEADRMLDMG-----------------FEPQIRKIV 322 (448)
Q Consensus 262 ~~~~~~~~l~~~~~Ilv~TP~~L~~~l~~--~~~~l~~v~~lVlDEah~ll~~g-----------------f~~~i~~i~ 322 (448)
-+++|.-|..-.+.|.. ..+.-..+++||||.+..|.... +...++++.
T Consensus 1484 ------------~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~ 1551 (1706)
T 3cmw_A 1484 ------------DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 1551 (1706)
T ss_dssp ------------GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHH
T ss_pred ------------HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHH
Confidence 13677777554333322 11122457899999999886431 122355555
Q ss_pred HHcCCCCCCCceEEEEeccCChHHH
Q 013189 323 QQMDMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 323 ~~l~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
..+ .+..-+++|...+...+-
T Consensus 1552 ~~~----~~~~~~~i~~~~~~~~~~ 1572 (1706)
T 3cmw_A 1552 GNL----KQSNTLLIFINQIRMKIG 1572 (1706)
T ss_dssp HHH----HHHTCEEEEEECBC----
T ss_pred HHH----HhCCcEEEEeeccccccc
Confidence 555 222346777777665543
No 330
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=61.26 E-value=30 Score=29.97 Aligned_cols=42 Identities=14% Similarity=0.073 Sum_probs=34.8
Q ss_pred CccEEEEeCchHHHHHHHHHHHHC-----CCCeEEecCCCCHHHHHH
Q 013189 404 QALTLVFVETKKGADALEHWLYMN-----GFPATTIHGDRTQQRTSI 445 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~-----g~~~~~iHg~~~q~eR~~ 445 (448)
..++||.|+|+.-++++++.+... ++.+..+||+.+..++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 128 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE 128 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH
Confidence 347999999999999998887664 789999999988766544
No 331
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=61.18 E-value=56 Score=29.34 Aligned_cols=27 Identities=19% Similarity=0.078 Sum_probs=23.3
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..++-|||.+...|..+.+.|...|+.
T Consensus 191 ~~~~ai~~~~d~~a~g~~~al~~~g~~ 217 (292)
T 3k4h_A 191 QPPTAIMATDDLIGLGVLSALSKKGFV 217 (292)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEEcChHHHHHHHHHHHHhCCC
Confidence 456789999999999999999998864
No 332
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=61.18 E-value=14 Score=35.94 Aligned_cols=41 Identities=5% Similarity=-0.095 Sum_probs=36.8
Q ss_pred CccEEEEeCchHHHHHHHHHHHH---CCCCeEEecCCCCHHHHH
Q 013189 404 QALTLVFVETKKGADALEHWLYM---NGFPATTIHGDRTQQRTS 444 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~---~g~~~~~iHg~~~q~eR~ 444 (448)
+.++||.|+|+.-|.++++.|.. .++++..+||+.+..+|.
T Consensus 64 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 107 (414)
T 3oiy_A 64 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKE 107 (414)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHH
Confidence 67899999999999999999988 688999999999986653
No 333
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=60.94 E-value=47 Score=33.54 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=13.8
Q ss_pred CeeEeccCCCCcchhh
Q 013189 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~li~a~TGsGKT~~~ 199 (448)
.+++++++|+|||+..
T Consensus 103 vI~ivG~~GvGKTTl~ 118 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTC 118 (504)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999864
No 334
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=60.89 E-value=4 Score=36.24 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.2
Q ss_pred hcCCCeeEeccCCCCcchh
Q 013189 180 IGGRDLMACAQTGSGKTAA 198 (448)
Q Consensus 180 ~~g~d~li~a~TGsGKT~~ 198 (448)
..|+-+.+++|+|+|||+.
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4678899999999999994
No 335
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=60.36 E-value=3 Score=36.30 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=16.6
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.++.+++++++|||||+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 5678999999999999964
No 336
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=60.28 E-value=3.2 Score=35.31 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=17.0
Q ss_pred hcCCCeeEeccCCCCcchhh
Q 013189 180 IGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 180 ~~g~d~li~a~TGsGKT~~~ 199 (448)
..++.++++++.|||||+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 35678999999999999954
No 337
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=60.10 E-value=81 Score=26.92 Aligned_cols=67 Identities=9% Similarity=-0.144 Sum_probs=19.2
Q ss_pred hcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013189 180 IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 180 ~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~ 246 (448)
+.|-.+-+.+..|-|=|+.+.+|+-..-.................++||+-........+...++++
T Consensus 18 ~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~ 84 (206)
T 3mm4_A 18 SHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM 84 (206)
T ss_dssp -------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT
T ss_pred ccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 3455677888899999999999974322211111111112234457888888877777777767664
No 338
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=58.43 E-value=81 Score=31.02 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=14.4
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
++-+++++++|+|||+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~ 115 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTA 115 (425)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445778899999999854
No 339
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=58.26 E-value=7 Score=37.36 Aligned_cols=19 Identities=42% Similarity=0.656 Sum_probs=16.1
Q ss_pred CCCeeEeccCCCCcchhhh
Q 013189 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~ 200 (448)
++.+++.+|+|+|||....
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4679999999999999643
No 340
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=58.19 E-value=3.5 Score=36.30 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=16.0
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.|+-+++++|+|+|||+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667899999999999953
No 341
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=57.88 E-value=23 Score=39.05 Aligned_cols=75 Identities=12% Similarity=0.173 Sum_probs=56.4
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHH---HhcC---CcEEEeChhHHHHHHhcccccCCC
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE---LERG---VDILVATPGRLVDLLERARVSLQM 297 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~~---~~Ilv~TP~~L~~~l~~~~~~l~~ 297 (448)
.++||.|+++.-+..+.+.+... .++++..++|+.+..+.... +..+ ++||||| .. + ...+++..
T Consensus 504 ~k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT-~v----~-~~GlDl~~ 574 (968)
T 3dmq_A 504 QKVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS-EI----G-SEGRNFQF 574 (968)
T ss_dssp SCCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS-CC----T-TCSSCCTT
T ss_pred CCEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec-ch----h-hcCCCccc
Confidence 45999999999999988888752 36789999999886554433 3344 8999999 22 1 34678999
Q ss_pred eeEEEEecCC
Q 013189 298 IRYLALDEAD 307 (448)
Q Consensus 298 v~~lVlDEah 307 (448)
+.+||+-+.+
T Consensus 575 ~~~VI~~d~p 584 (968)
T 3dmq_A 575 ASHMVMFDLP 584 (968)
T ss_dssp CCEEECSSCC
T ss_pred CcEEEEecCC
Confidence 9999987665
No 342
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=57.80 E-value=3.3 Score=39.34 Aligned_cols=16 Identities=38% Similarity=0.391 Sum_probs=13.7
Q ss_pred CeeEeccCCCCcchhh
Q 013189 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~li~a~TGsGKT~~~ 199 (448)
-+++++|||||||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3789999999999864
No 343
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=57.73 E-value=1e+02 Score=27.34 Aligned_cols=180 Identities=14% Similarity=0.146 Sum_probs=90.8
Q ss_pred EEEEcCcH--HHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHH----hcCCcEEEeChhHHHHHHhcccccCCCee
Q 013189 226 ALILAPTR--ELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL----ERGVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 226 ~lil~Ptr--eLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
+-|++|.. ..-.++...+++.+...++.+.++........+...+ ..++|-+|..|......++. +.-..+-
T Consensus 10 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~--l~~~~iP 87 (276)
T 3jy6_A 10 IAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSNPQTVQE--ILHQQMP 87 (276)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCCHHHHHH--HHTTSSC
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCcHHHHHH--HHHCCCC
Confidence 44444432 2445556666666666688888877766655443322 34666555544322222221 1123455
Q ss_pred EEEEecCCc-----cCcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCC--hHHHHHHHHhhcCcEEEEeccccCcccce
Q 013189 300 YLALDEADR-----MLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP--KEIQRLASDFLANYIFLAVGRVGSSTDLI 372 (448)
Q Consensus 300 ~lVlDEah~-----ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~--~~v~~l~~~~l~~~~~i~v~~~~~~~~~i 372 (448)
+|++|.... ............+.++|.. ...+++.+++.... .....-..-|..-.... . .
T Consensus 88 vV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~--~G~~~I~~i~~~~~~~~~~~~R~~gf~~~l~~~---------~-~ 155 (276)
T 3jy6_A 88 VVSVDREMDACPWPQVVTDNFEAAKAATTAFRQ--QGYQHVVVLTSELELSRTRQERYRGILAAAQDV---------D-V 155 (276)
T ss_dssp EEEESCCCTTCSSCEEECCHHHHHHHHHHHHHT--TTCCEEEEEEECSTTCHHHHHHHHHHHTTCSEE---------E-E
T ss_pred EEEEecccCCCCCCEEEEChHHHHHHHHHHHHH--cCCCeEEEEecCCCCCchHHHHHHHHHHHHHhC---------C-c
Confidence 666664221 1122344555566666643 23456777777543 22222222232211000 0 0
Q ss_pred eEEEEEe----cccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 373 VQRVEFV----HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 373 ~q~~~~~----~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
+... ...+....+.++|.. ...++-|||.+...|..+.+.|...|+.
T Consensus 156 ---~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~ai~~~~d~~a~g~~~al~~~g~~ 206 (276)
T 3jy6_A 156 ---LEVSESSYNHSEVHQRLTQLITQ--------NDQKTVAFALKERWLLEFFPNLIISGLI 206 (276)
T ss_dssp ---EEECSSSCCHHHHHHHHHHHHHS--------SSSCEEEEESSHHHHHHHSHHHHHSSSC
T ss_pred ---EEEeccccCCcHHHHHHHHHHhc--------CCCCcEEEEeCcHHHHHHHHHHHHcCCC
Confidence 1111 111223344444422 1567899999999999999999998865
No 344
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=57.53 E-value=3.6 Score=35.99 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=17.5
Q ss_pred HhcCCCeeEeccCCCCcchhh
Q 013189 179 SIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 179 i~~g~d~li~a~TGsGKT~~~ 199 (448)
+..++-+++++++|||||+..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 446778999999999999854
No 345
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=57.37 E-value=3.4 Score=39.36 Aligned_cols=16 Identities=25% Similarity=0.175 Sum_probs=13.7
Q ss_pred CeeEeccCCCCcchhh
Q 013189 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~li~a~TGsGKT~~~ 199 (448)
-++|++|||||||...
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4789999999999864
No 346
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=57.30 E-value=3.4 Score=39.70 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=14.7
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
+-+++++|||+|||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999864
No 347
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=57.24 E-value=70 Score=29.07 Aligned_cols=27 Identities=19% Similarity=0.033 Sum_probs=23.5
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..++-|||.+...|..+.+.|...|+.
T Consensus 196 ~~~~ai~~~nd~~A~g~~~al~~~G~~ 222 (303)
T 3kke_A 196 DGPTAVVVASVNAAVGALSTALRLGLR 222 (303)
T ss_dssp TSCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 457899999999999999999998865
No 348
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=57.24 E-value=4.6 Score=35.35 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=16.7
Q ss_pred hHhcCCCeeEeccCCCCcchhh
Q 013189 178 ISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 178 ~i~~g~d~li~a~TGsGKT~~~ 199 (448)
.+..|+-+.+.+|+|||||+.+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4557888999999999999943
No 349
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=57.24 E-value=18 Score=31.86 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=35.9
Q ss_pred CccEEEEeCchHHHHHHHHHHHHC-----CCCeEEecCCCCHHHHHHH
Q 013189 404 QALTLVFVETKKGADALEHWLYMN-----GFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~-----g~~~~~iHg~~~q~eR~~~ 446 (448)
..++||.|+|++-|.++++.+... ++.+..++|+....++.+.
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 139 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR 139 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh
Confidence 568999999999999999988763 6889999999987766543
No 350
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=56.72 E-value=3.5 Score=37.37 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=28.3
Q ss_pred CCCcccCCCCHHHHHHHHHCC--CCCCCHHHHhHhhhHh--cCCCeeEeccCCCCcchhh
Q 013189 144 VNTFAEIDLGEALNLNIRRCK--YVKPTPVQRHAIPISI--GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 144 ~~~f~~~~l~~~l~~~l~~~~--~~~pt~~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~ 199 (448)
..+|+++.-.+.....+...- |..+ ..+..+- -.+.+++.+|+|+|||+..
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 356777766665555554321 1111 1121110 1234999999999999853
No 351
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=56.57 E-value=3.8 Score=35.55 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=16.6
Q ss_pred hcCCCeeEeccCCCCcchhh
Q 013189 180 IGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 180 ~~g~d~li~a~TGsGKT~~~ 199 (448)
..|.-+++++++|||||+..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677899999999999854
No 352
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=56.30 E-value=2.8 Score=35.97 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=16.6
Q ss_pred hcCCCeeEeccCCCCcchhh
Q 013189 180 IGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 180 ~~g~d~li~a~TGsGKT~~~ 199 (448)
..|.-+++++++|||||+..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35677899999999999943
No 353
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=56.17 E-value=12 Score=34.61 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=15.8
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
...+++.+|+|+|||...
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 568999999999999854
No 354
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=55.94 E-value=3.9 Score=35.43 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=16.0
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.|.-+.+.+|+|||||+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5667889999999999943
No 355
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=55.94 E-value=3.7 Score=37.53 Aligned_cols=15 Identities=33% Similarity=0.260 Sum_probs=13.2
Q ss_pred eeEeccCCCCcchhh
Q 013189 185 LMACAQTGSGKTAAF 199 (448)
Q Consensus 185 ~li~a~TGsGKT~~~ 199 (448)
++++++||||||+..
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 689999999999864
No 356
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=55.72 E-value=93 Score=28.72 Aligned_cols=27 Identities=11% Similarity=0.026 Sum_probs=23.4
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..++-|||.+...|..+.+.|...|+.
T Consensus 241 ~~~~ai~~~nd~~A~g~~~al~~~G~~ 267 (338)
T 3dbi_A 241 AKFSALVASNDDMAIGAMKALHERGVA 267 (338)
T ss_dssp CCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEECChHHHHHHHHHHHHcCCC
Confidence 456899999999999999999998864
No 357
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=55.53 E-value=4 Score=34.78 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=15.9
Q ss_pred CCCeeEeccCCCCcchhhh
Q 013189 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~ 200 (448)
.+.+++++++|||||+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4578999999999999643
No 358
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=55.36 E-value=4.7 Score=39.07 Aligned_cols=19 Identities=47% Similarity=0.539 Sum_probs=16.2
Q ss_pred cCCC--eeEeccCCCCcchhh
Q 013189 181 GGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d--~li~a~TGsGKT~~~ 199 (448)
.|.+ +|+.++||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4777 699999999999864
No 359
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=55.15 E-value=21 Score=37.74 Aligned_cols=73 Identities=22% Similarity=0.216 Sum_probs=50.3
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhccc-----------------------------CCcEEEEEECCCCHHHHHHHHh---
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQ-----------------------------TGVKVVVAYGGAPINQQLRELE--- 271 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~-----------------------------~~~~~~~~~gg~~~~~~~~~l~--- 271 (448)
..+||.+|++.-+..++..+.+.... ....+..++++.+..++.....
T Consensus 238 ~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~ 317 (720)
T 2zj8_A 238 KGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFR 317 (720)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 35999999999999998888764211 0123788899998776654332
Q ss_pred c-CCcEEEeChhHHHHHHhcccccCCCeeEEE
Q 013189 272 R-GVDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 272 ~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lV 302 (448)
. ..+|||||.- + ...+++..+.+||
T Consensus 318 ~g~~~vlvaT~~-----l-~~Gvdip~~~~VI 343 (720)
T 2zj8_A 318 KGIIKAVVATPT-----L-SAGINTPAFRVII 343 (720)
T ss_dssp TTSSCEEEECST-----T-GGGCCCCBSEEEE
T ss_pred CCCCeEEEECcH-----h-hccCCCCceEEEE
Confidence 2 4799999941 2 2456788887644
No 360
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=54.92 E-value=1.2e+02 Score=27.14 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=22.9
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..++-|||.+...|..+.+.|+..|+.
T Consensus 183 ~~~~ai~~~~d~~A~g~~~al~~~g~~ 209 (285)
T 3c3k_A 183 VKPDAIFAISDVLAAGAIQALTESGLS 209 (285)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEECCHHHHHHHHHHHHHcCCC
Confidence 356789999999999999999988864
No 361
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=54.91 E-value=3.9 Score=34.02 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.7
Q ss_pred CeeEeccCCCCcchhh
Q 013189 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~li~a~TGsGKT~~~ 199 (448)
-+++++++|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999954
No 362
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=54.86 E-value=21 Score=31.76 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=35.2
Q ss_pred CccEEEEeCchHHHHHHHHHHHH----CCCCeEEecCCCCHHHHHHH
Q 013189 404 QALTLVFVETKKGADALEHWLYM----NGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~----~g~~~~~iHg~~~q~eR~~~ 446 (448)
+.++||.|+|++-|.++++.+.. .++.+..++|+.+..+....
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 148 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH
Confidence 56799999999999988777654 48999999999988766543
No 363
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=54.78 E-value=4.6 Score=34.67 Aligned_cols=16 Identities=25% Similarity=0.590 Sum_probs=13.7
Q ss_pred CCeeEeccCCCCcchh
Q 013189 183 RDLMACAQTGSGKTAA 198 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~ 198 (448)
+-+.+.+|+|+|||+.
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4478999999999994
No 364
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=54.72 E-value=40 Score=33.10 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=27.0
Q ss_pred CCHHHHhHhhhHh---cCCCeeEeccCCCCcchhhhhhHHHHHhh
Q 013189 168 PTPVQRHAIPISI---GGRDLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 168 pt~~Q~~~i~~i~---~g~d~li~a~TGsGKT~~~~lpil~~l~~ 209 (448)
|-..=..+|..++ .|+-+.+.+++|+|||.... .|.+...
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~--~Iar~i~ 199 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ--NIAQSIA 199 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH--HHHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHHH--HHHHHHh
Confidence 3344455666544 68999999999999999543 3444443
No 365
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=54.71 E-value=4.3 Score=35.77 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=16.4
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.|+-+++++|+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 6777999999999999943
No 366
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=54.02 E-value=4.6 Score=35.16 Aligned_cols=16 Identities=25% Similarity=0.590 Sum_probs=14.1
Q ss_pred CCeeEeccCCCCcchh
Q 013189 183 RDLMACAQTGSGKTAA 198 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~ 198 (448)
|-+++++|+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999984
No 367
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=53.96 E-value=5.4 Score=33.86 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=16.5
Q ss_pred CeeEeccCCCCcchhhhhhHHHHHh
Q 013189 184 DLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~lpil~~l~ 208 (448)
-.++++++|||||..+ -+|..++
T Consensus 28 ~~~i~G~NGsGKStll--~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG--DAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHH--HHHHHHT
T ss_pred cEEEECCCCCCHHHHH--HHHHHHH
Confidence 4689999999999953 3444443
No 368
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=53.65 E-value=5.9 Score=34.70 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=19.0
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhh
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~ 209 (448)
.+.-+.+.+++|||||+. +-+|..++.
T Consensus 21 ~g~~v~I~G~sGsGKSTl--~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL--SNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHH--HHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHH--HHHHHHHHh
Confidence 345678999999999984 444554443
No 369
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=53.58 E-value=24 Score=32.32 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=33.2
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC-eEEecCCCCHH
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQQ 441 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~-~~~iHg~~~q~ 441 (448)
..++||||.+-..+...+..|...|++ +..|.|++..=
T Consensus 230 ~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W 268 (280)
T 1urh_A 230 DKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW 268 (280)
T ss_dssp SSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHH
Confidence 678999999999999999999999995 99999998643
No 370
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=53.33 E-value=6.3 Score=37.03 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=16.4
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
....+++.+++|+|||...
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4678999999999999854
No 371
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=53.32 E-value=3.8 Score=38.76 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=18.3
Q ss_pred hHhcCCCeeEeccCCCCcchhh
Q 013189 178 ISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 178 ~i~~g~d~li~a~TGsGKT~~~ 199 (448)
.+..+.++++.+++|+|||...
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHHH
Confidence 4446789999999999999854
No 372
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=53.09 E-value=5.8 Score=37.48 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=20.6
Q ss_pred hcCCCeeEeccCCCCcchhhhhhHHHHHh
Q 013189 180 IGGRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 180 ~~g~d~li~a~TGsGKT~~~~lpil~~l~ 208 (448)
..|+-+.+++|+|||||+ ++-+|..++
T Consensus 124 ~~Ge~vaIvGpsGsGKST--Ll~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSM--LCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHH--HHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHH--HHHHHhhhc
Confidence 367789999999999999 444555554
No 373
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=52.98 E-value=3.4 Score=35.14 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=16.5
Q ss_pred cCCCeeEeccCCCCcchhhh
Q 013189 181 GGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~ 200 (448)
.|.-+.+++++|||||+.+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45668899999999999654
No 374
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=52.75 E-value=4.8 Score=33.98 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=15.2
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
++-++++++.|||||+..
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999964
No 375
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=52.35 E-value=2.6 Score=39.10 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=25.7
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHH-HhHhhhH--hcCCCeeEeccCCCCcchhh
Q 013189 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQ-RHAIPIS--IGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 144 ~~~f~~~~l~~~l~~~l~~~~~~~pt~~Q-~~~i~~i--~~g~d~li~a~TGsGKT~~~ 199 (448)
..+|++++-.+.+++.|.+.-. .|+. ..++..+ .-.+.+++.+|.|+|||+..
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 3568888766666666654210 1111 1112111 11234999999999999843
No 376
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=52.30 E-value=5.4 Score=33.46 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=15.3
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
+..++++++.|||||+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467899999999999953
No 377
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=51.92 E-value=4.5 Score=37.27 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.4
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
+.+++.+|+|+|||+..
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 34999999999999853
No 378
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=51.60 E-value=10 Score=31.65 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=31.2
Q ss_pred CccEEEEeCch---------HHHHHHHHHHHHCCCCeEEecCCCCH
Q 013189 404 QALTLVFVETK---------KGADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~~IIF~~t~---------~~a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
..++||||.+- ..+..++..|...|+++..+.|++..
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~~ 138 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLSS 138 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHHH
Confidence 56799999987 35888999999999999999988643
No 379
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=51.57 E-value=6.4 Score=45.95 Aligned_cols=23 Identities=30% Similarity=0.189 Sum_probs=17.9
Q ss_pred cCCCeeEeccCCCCcchhhhhhH
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPI 203 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpi 203 (448)
.|.-+++.+++|+|||...+-.+
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA 753 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVI 753 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHH
Confidence 45679999999999998654433
No 380
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=51.57 E-value=67 Score=29.80 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=14.3
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
++-+++++++|+|||+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTA 115 (297)
T ss_dssp SEEEEEECSSCSSTTHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445778899999999854
No 381
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=51.47 E-value=8 Score=33.61 Aligned_cols=29 Identities=21% Similarity=0.246 Sum_probs=20.2
Q ss_pred CCCeeEEEEecCCcc--CcCCCHHHHHHHHH
Q 013189 295 LQMIRYLALDEADRM--LDMGFEPQIRKIVQ 323 (448)
Q Consensus 295 l~~v~~lVlDEah~l--l~~gf~~~i~~i~~ 323 (448)
+...++|||||+..| .+..|.+.+..++.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 466789999999888 44446555555554
No 382
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=51.43 E-value=7 Score=32.41 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=16.4
Q ss_pred CeeEeccCCCCcchhhhhhHHHHHh
Q 013189 184 DLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~lpil~~l~ 208 (448)
-.++.+++|+|||.. +-++..++
T Consensus 25 ~~~I~G~NGsGKSti--l~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL--LDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHHHH
Confidence 368999999999995 33444433
No 383
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=51.41 E-value=31 Score=35.36 Aligned_cols=78 Identities=12% Similarity=0.139 Sum_probs=49.8
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhccc----CCcEEEEEECCCCH--HHHHHHHhcC-Cc---EEEeChhHHHHHHhcccc
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQ----TGVKVVVAYGGAPI--NQQLRELERG-VD---ILVATPGRLVDLLERARV 293 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~----~~~~~~~~~gg~~~--~~~~~~l~~~-~~---Ilv~TP~~L~~~l~~~~~ 293 (448)
.++||.|++++-|..+++.+.+.... ..-.+..++|.... ......+.++ .+ |||+|- ++ ...+
T Consensus 440 ~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~l-~~Gi 513 (590)
T 3h1t_A 440 AKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----LL-TTGV 513 (590)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----TT-TTTC
T ss_pred ccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----hh-hcCc
Confidence 57999999999999999999876421 12235555666542 1222333332 23 677762 12 2467
Q ss_pred cCCCeeEEEEecCC
Q 013189 294 SLQMIRYLALDEAD 307 (448)
Q Consensus 294 ~l~~v~~lVlDEah 307 (448)
++..+.+||++..-
T Consensus 514 Dip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 514 DAPTCKNVVLARVV 527 (590)
T ss_dssp CCTTEEEEEEESCC
T ss_pred cchheeEEEEEecC
Confidence 89999999997653
No 384
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=51.38 E-value=4.8 Score=35.64 Aligned_cols=19 Identities=21% Similarity=0.386 Sum_probs=15.7
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.++-+++.++||+|||...
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4667999999999998743
No 385
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=51.32 E-value=6.9 Score=33.61 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=13.0
Q ss_pred CeeEeccCCCCcchh
Q 013189 184 DLMACAQTGSGKTAA 198 (448)
Q Consensus 184 d~li~a~TGsGKT~~ 198 (448)
.+.+.+|+|+|||+.
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999994
No 386
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=51.15 E-value=25 Score=36.94 Aligned_cols=74 Identities=19% Similarity=0.162 Sum_probs=50.5
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhccc--------------------------CCcEEEEEECCCCHHHHHHHHh----cC
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQ--------------------------TGVKVVVAYGGAPINQQLRELE----RG 273 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~--------------------------~~~~~~~~~gg~~~~~~~~~l~----~~ 273 (448)
..+||.+|++.-+..++..+.+.... ....+..++++.+..++..... ..
T Consensus 243 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~ 322 (702)
T 2p6r_A 243 GGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGN 322 (702)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCC
Confidence 35999999999999988888754211 0124667899998866654333 24
Q ss_pred CcEEEeChhHHHHHHhcccccCCCeeEEEE
Q 013189 274 VDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 274 ~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVl 303 (448)
.+|||||. .-...+++..+.+||.
T Consensus 323 ~~vlvaT~------~l~~Gidip~~~~VI~ 346 (702)
T 2p6r_A 323 IKVVVATP------TLAAGVNLPARRVIVR 346 (702)
T ss_dssp CCEEEECS------TTTSSSCCCBSEEEEC
T ss_pred CeEEEECc------HHhccCCCCceEEEEc
Confidence 79999995 1234567888877553
No 387
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=50.87 E-value=5.4 Score=35.63 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=16.5
Q ss_pred HhcCCCeeEeccCCCCcchhh
Q 013189 179 SIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 179 i~~g~d~li~a~TGsGKT~~~ 199 (448)
+..|+-+++++|+|+|||+.+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 446778999999999999943
No 388
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=50.81 E-value=50 Score=29.45 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=34.5
Q ss_pred CccEEEEeCchHHHHHHHHHHHHC----CCCeEEecCCCCHHHHHH
Q 013189 404 QALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQRTSI 445 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~----g~~~~~iHg~~~q~eR~~ 445 (448)
..++||.|+|+.-|.++++.+... ++.+..++|+....+...
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 156 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 156 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHH
Confidence 457999999999999998877654 889999999988765543
No 389
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=50.76 E-value=6.3 Score=41.97 Aligned_cols=25 Identities=44% Similarity=0.630 Sum_probs=20.0
Q ss_pred HhhhHhcCCC--eeEeccCCCCcchhh
Q 013189 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~li~a~TGsGKT~~~ 199 (448)
.|..++.|.| +|+.++||||||...
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 4556678887 788899999999763
No 390
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=50.74 E-value=8.4 Score=38.46 Aligned_cols=67 Identities=10% Similarity=0.133 Sum_probs=43.6
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhc-CCcEEEeChhHHHHHHhcccccCCCeeEEE
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lV 302 (448)
.++||.+|++.-|..+++.+++. ++++..+++.... .....+.. ..+|||||- .+. ..+++.. ++||
T Consensus 191 ~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~-~~~~~f~~g~~~iLVaT~-----v~~-~GiDip~-~~VI 258 (459)
T 2z83_A 191 GKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYD-TEYPKCKNGDWDFVITTD-----ISE-MGANFGA-SRVI 258 (459)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCC-CCGGGSSSCCCSEEEESS-----CC----CCCSC-SEEE
T ss_pred CCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHH-HHHhhccCCCceEEEECC-----hHH-hCeecCC-CEEE
Confidence 46999999999999999999885 5777787775321 11122222 478999993 222 3456776 5555
No 391
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=50.54 E-value=4.3 Score=36.68 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=21.0
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+.+-++|++||--.-||......+..++..+
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l 191 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKL 191 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4556778888887777765555666666555
No 392
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=50.38 E-value=11 Score=37.52 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=16.6
Q ss_pred cCCCeeEeccCCCCcchhhh
Q 013189 181 GGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~ 200 (448)
.++.+++.+|+|+|||+...
T Consensus 62 ~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHH
Confidence 34689999999999998653
No 393
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=50.38 E-value=13 Score=37.85 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=19.3
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHH
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIIS 205 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~ 205 (448)
.+-+++|.+.||||||.+...-++.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILS 190 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999975444433
No 394
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=50.09 E-value=4.8 Score=35.86 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=13.1
Q ss_pred HhcCCCeeEeccCCCCcchhh
Q 013189 179 SIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 179 i~~g~d~li~a~TGsGKT~~~ 199 (448)
+..|+-+.+.+|+|||||+..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EECCCEEEEECSCC----CHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 345777899999999999953
No 395
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=49.93 E-value=35 Score=29.05 Aligned_cols=42 Identities=14% Similarity=0.126 Sum_probs=34.1
Q ss_pred CCccEEEEeCchHHHHHHHHHHHHC--CCCeEEecCCCCHHHHH
Q 013189 403 KQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQRTS 444 (448)
Q Consensus 403 ~~~~~IIF~~t~~~a~~l~~~L~~~--g~~~~~iHg~~~q~eR~ 444 (448)
...++||.|+++.-+.++++.+... .+.+..+||+....+..
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQK 114 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHH
Confidence 3567999999999999999998765 47889999988755443
No 396
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=49.42 E-value=3.1 Score=42.28 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=45.1
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHH---HHHHhc-CCcEEEeChhHHHHHHhcccccCCCee
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQ---LRELER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~-~~~Ilv~TP~~L~~~l~~~~~~l~~v~ 299 (448)
.++||.|+++.-|..+++.+.+. +..+..++|+....++ .+.+.. ..+|||||- .+ ...+++..++
T Consensus 358 ~~~LVF~~s~~~a~~l~~~L~~~----~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l-~~GiDip~v~ 427 (508)
T 3fho_A 358 GQSIIFCKKKDTAEEIARRMTAD----GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VI-ARGIDVSQVN 427 (508)
T ss_dssp CCEEEBCSSTTTTTHHHHHHTTT----TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----------CCCTTCC
T ss_pred CcEEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hh-hcCCCccCCC
Confidence 46999999999999988888763 5677788887654332 233333 478999995 22 2467888999
Q ss_pred EEEEe
Q 013189 300 YLALD 304 (448)
Q Consensus 300 ~lVlD 304 (448)
+||..
T Consensus 428 ~VI~~ 432 (508)
T 3fho_A 428 LVVNY 432 (508)
T ss_dssp EEEC-
T ss_pred EEEEE
Confidence 98853
No 397
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=49.41 E-value=5.8 Score=33.95 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=16.2
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.+..++++++.|||||++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999954
No 398
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=49.27 E-value=5.9 Score=34.40 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=16.2
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.+.-++++++.|||||+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677999999999999953
No 399
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=49.00 E-value=8 Score=36.42 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=19.5
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHHhh
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l~~ 209 (448)
+.-+.+++++|+|||+ ++-+|..++.
T Consensus 102 g~vi~lvG~nGsGKTT--ll~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTT--TIAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHH--HHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHH--HHHHHHHHHH
Confidence 4568899999999999 4555655554
No 400
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=48.94 E-value=5.5 Score=37.97 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=14.1
Q ss_pred CeeEeccCCCCcchhh
Q 013189 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~li~a~TGsGKT~~~ 199 (448)
-+++++|||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999864
No 401
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=48.88 E-value=9.3 Score=47.37 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHCCCCCCCHHHH-hHhh---hHhcCCCeeEeccCCCCcchhhh
Q 013189 152 LGEALNLNIRRCKYVKPTPVQR-HAIP---ISIGGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 152 l~~~l~~~l~~~~~~~pt~~Q~-~~i~---~i~~g~d~li~a~TGsGKT~~~~ 200 (448)
|...+.+.+.+.++. |++.+. +++. .+...+-+|+++|||||||.++-
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 566777788888874 555443 3333 22334559999999999999865
No 402
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=48.56 E-value=48 Score=29.79 Aligned_cols=27 Identities=11% Similarity=0.031 Sum_probs=23.4
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..++-|||.+...|..+.+.|...|+.
T Consensus 187 ~~~~ai~~~~d~~a~g~~~al~~~g~~ 213 (289)
T 3g85_A 187 NTPKALFCNSDSIALGVISVLNKRQIS 213 (289)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCC
Confidence 456899999999999999999998864
No 403
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=48.52 E-value=5.9 Score=33.64 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=15.2
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
+.-++++++.|||||+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999953
No 404
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=48.50 E-value=5.8 Score=33.33 Aligned_cols=16 Identities=25% Similarity=0.300 Sum_probs=13.7
Q ss_pred CeeEeccCCCCcchhh
Q 013189 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~li~a~TGsGKT~~~ 199 (448)
-++++++.|||||+..
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3789999999999954
No 405
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=48.29 E-value=14 Score=35.06 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=15.0
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
..+++.+|+|+|||+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999954
No 406
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=48.20 E-value=21 Score=32.94 Aligned_cols=44 Identities=11% Similarity=0.014 Sum_probs=29.4
Q ss_pred HHHHHHHHHCCCCCCCHHHHhH-hhhHhcCC-----CeeEeccCCCCcchhhh
Q 013189 154 EALNLNIRRCKYVKPTPVQRHA-IPISIGGR-----DLMACAQTGSGKTAAFC 200 (448)
Q Consensus 154 ~~l~~~l~~~~~~~pt~~Q~~~-i~~i~~g~-----d~li~a~TGsGKT~~~~ 200 (448)
..+.+-|+..||. |++-.. +..++.++ .+++.+|.|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3577777776654 555333 33444433 49999999999999654
No 407
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=47.88 E-value=1.3e+02 Score=27.03 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=21.4
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGF 429 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~ 429 (448)
.....|||.+...|..+.+.|+..|+
T Consensus 187 ~~~~ai~~~~d~~A~g~~~al~~~g~ 212 (297)
T 3rot_A 187 PETNIIFCLTSQALDPLGQMLLHPDR 212 (297)
T ss_dssp TTCCEEEESSHHHHHHHHHHHHSHHH
T ss_pred CCCCEEEEcCCcchHHHHHHHHhcCC
Confidence 45679999999999999998887664
No 408
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=47.84 E-value=6 Score=32.94 Aligned_cols=16 Identities=6% Similarity=-0.135 Sum_probs=13.7
Q ss_pred CeeEeccCCCCcchhh
Q 013189 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~li~a~TGsGKT~~~ 199 (448)
-++++++.|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999954
No 409
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=47.82 E-value=12 Score=32.01 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=29.6
Q ss_pred CCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEec
Q 013189 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
....++||||.+.-||......+..++..+ ....|+|++|-
T Consensus 85 ~~~~~llLDEp~a~LD~~~~~~~~~~l~~~----~~~~~~ivith 125 (173)
T 3kta_B 85 KPAPFYLFDEIDAHLDDANVKRVADLIKES----SKESQFIVITL 125 (173)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHH----TTTSEEEEECS
T ss_pred CCCCEEEECCCccCCCHHHHHHHHHHHHHh----ccCCEEEEEEe
Confidence 345789999999999976666677777666 34467777653
No 410
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=47.79 E-value=1e+02 Score=27.34 Aligned_cols=166 Identities=9% Similarity=-0.026 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcccCCcEEEEEECCCCHH---HHHH-HHhcCCcEEEeChhHH-HHHHhcccccCCCeeEEEEecCC-c-
Q 013189 236 SSQIHVEAKKFSYQTGVKVVVAYGGAPIN---QQLR-ELERGVDILVATPGRL-VDLLERARVSLQMIRYLALDEAD-R- 308 (448)
Q Consensus 236 a~qi~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~-~l~~~~~Ilv~TP~~L-~~~l~~~~~~l~~v~~lVlDEah-~- 308 (448)
-.++..-+++.+...++.+.++... ... ...+ .+..++|-|| .|... ...+.. ..+-+|++|... .
T Consensus 20 ~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI-~~~~~~~~~~~~-----~~iPvV~~~~~~~~~ 92 (280)
T 3gyb_A 20 FIDLIQSLSDVLTPKGYRLSVIDSL-TSQAGTDPITSALSMRPDGII-IAQDIPDFTVPD-----SLPPFVIAGTRITQA 92 (280)
T ss_dssp GHHHHHHHHHHHGGGTCEEEEECSS-SSCSSSCHHHHHHTTCCSEEE-EESCC-------------CCCEEEESCCCSSS
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCC-CchHHHHHHHHHHhCCCCEEE-ecCCCChhhHhh-----cCCCEEEECCCCCCC
Confidence 3455555555555567777776655 322 1222 3345788777 44322 222222 567778887544 1
Q ss_pred --c--CcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHh---hcCcEEEEeccccCcccceeEEEEEe--
Q 013189 309 --M--LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF---LANYIFLAVGRVGSSTDLIVQRVEFV-- 379 (448)
Q Consensus 309 --l--l~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~---l~~~~~i~v~~~~~~~~~i~q~~~~~-- 379 (448)
+ ...........+.++|.. ...+++.+++..... ...-..-| +... +.... ..+...
T Consensus 93 ~~~~~V~~D~~~~g~~a~~~L~~--~G~~~i~~i~~~~~~-~~~R~~gf~~~l~~~--------~~~~~---~~~~~~~~ 158 (280)
T 3gyb_A 93 STHDSVANDDFRGAEIATKHLID--LGHTHIAHLRVGSGA-GLRRFESFEATMRAH--------GLEPL---SNDYLGPA 158 (280)
T ss_dssp CSTTEEEECHHHHHHHHHHHHHH--TTCCSEEEECCSSHH-HHHHHHHHHHHHHHT--------TCCCE---ECCCCSCC
T ss_pred CCCCEEEechHHHHHHHHHHHHH--CCCCeEEEEeCCCch-HHHHHHHHHHHHHHc--------CcCCC---cccccCCC
Confidence 1 112233444445555422 134567888776543 22222222 2111 00000 000011
Q ss_pred cccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 380 HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 380 ~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
....-...+.++|... ..+..|||.+...|..+.+.|...|+.
T Consensus 159 ~~~~~~~~~~~~l~~~--------~~~~ai~~~~d~~a~g~~~al~~~g~~ 201 (280)
T 3gyb_A 159 VEHAGYTETLALLKEH--------PEVTAIFSSNDITAIGALGAARELGLR 201 (280)
T ss_dssp CHHHHHHHHHHHHHHC--------TTCCEEEESSHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhCC--------CCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 1122234455555543 456789999999999999999888764
No 411
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=47.29 E-value=36 Score=33.97 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=33.3
Q ss_pred CccEEEEeCchHHHHHHHHHHHHC----CCCeEEecCCCCHHHH
Q 013189 404 QALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQRT 443 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~----g~~~~~iHg~~~q~eR 443 (448)
..++||.|+|+.-+.++++.+... ++.+..+||+.+..++
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 95 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVS 95 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhh
Confidence 667999999999888888877654 8999999999866543
No 412
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=47.14 E-value=16 Score=37.95 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=18.8
Q ss_pred hHhcCCCeeEeccCCCCcchhh
Q 013189 178 ISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 178 ~i~~g~d~li~a~TGsGKT~~~ 199 (448)
.+..+..+++.+|+|+|||+.+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 4557889999999999999954
No 413
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=47.08 E-value=1.3e+02 Score=27.03 Aligned_cols=171 Identities=9% Similarity=0.057 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHH----HhcCCcEEEeChhHHHHHHhcccccCCCeeEEEEecCCcc
Q 013189 234 ELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE----LERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (448)
Q Consensus 234 eLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~----l~~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lVlDEah~l 309 (448)
++...+.+.+++ .++.+.++........+... +..++|-||..|......+ ..+.-..+-+|++|....-
T Consensus 31 ~~~~gi~~~a~~----~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~--~~~~~~~iPvV~~~~~~~~ 104 (301)
T 3miz_A 31 DIVRGIQDWANA----NGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRRIVD--PESGDVSIPTVMINCRPQT 104 (301)
T ss_dssp HHHHHHHHHHHH----TTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEEECC--CCCTTCCCCEEEEEEECSS
T ss_pred HHHHHHHHHHHH----CCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCCccHHH--HHHHhCCCCEEEECCCCCC
Confidence 455555555555 46777777766555444332 2346775554443211111 1222345667777632211
Q ss_pred ------CcCCCHHHHHHHHHHcCCCCCCCceEEEEeccCChH-HHHHHHHh---hcCcEEEEeccccCcccceeEEEEEe
Q 013189 310 ------LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE-IQRLASDF---LANYIFLAVGRVGSSTDLIVQRVEFV 379 (448)
Q Consensus 310 ------l~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~-v~~l~~~~---l~~~~~i~v~~~~~~~~~i~q~~~~~ 379 (448)
.............++|.. ...+++.+++...... ...-..-| +.+. +...... .+...
T Consensus 105 ~~~~~~V~~D~~~~g~~a~~~L~~--~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--------g~~~~~~--~~~~~ 172 (301)
T 3miz_A 105 RELLPSIEPDDYQGARDLTRYLLE--RGHRRIGYIRLNPILLGAELRLDAFRRTTSEF--------GLTENDL--SISLG 172 (301)
T ss_dssp TTSSCEEEECHHHHHHHHHHHHHT--TTCCSEEEEECCTTSHHHHHHHHHHHHHHHHH--------TCCGGGE--EEEEC
T ss_pred CCCCCEEeeChHHHHHHHHHHHHH--cCCCeEEEEecCccchhHHHHHHHHHHHHHHc--------CCCCCcc--eEEEc
Confidence 112234455556666633 2345677777654321 11111111 2110 0011100 01111
Q ss_pred -----cccchH--HHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 380 -----HESDKR--SHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 380 -----~~~~k~--~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
....-. ..+.++|... ..++-|||.+...|..+.+.|...|+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~--------~~~~ai~~~~d~~A~g~~~al~~~g~~ 222 (301)
T 3miz_A 173 MDGPVGAENNYVFAAATEMLKQD--------DRPTAIMSGNDEMAIQIYIAAMALGLR 222 (301)
T ss_dssp EESSTTSCEECHHHHHHHHHTST--------TCCSEEEESSHHHHHHHHHHHHTTTCC
T ss_pred CCCCcCccccHHHHHHHHHHcCC--------CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 111112 4455555332 456899999999999999999999875
No 414
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=46.98 E-value=1.6e+02 Score=28.91 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=14.0
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
+.+++++++|+|||+..
T Consensus 101 ~vI~ivG~~GvGKTT~a 117 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSV 117 (433)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778899999999864
No 415
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=46.79 E-value=6.2 Score=37.89 Aligned_cols=16 Identities=31% Similarity=0.281 Sum_probs=13.9
Q ss_pred CeeEeccCCCCcchhh
Q 013189 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~li~a~TGsGKT~~~ 199 (448)
-++|+++||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4789999999999864
No 416
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=46.70 E-value=5.1 Score=36.50 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=15.4
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
.+.+++.+|+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456999999999999864
No 417
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=46.68 E-value=1.5e+02 Score=27.35 Aligned_cols=27 Identities=19% Similarity=-0.077 Sum_probs=23.1
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..++-|||.+...|..+.+.|+..|+.
T Consensus 237 ~~~~ai~~~nd~~A~g~~~al~~~G~~ 263 (340)
T 1qpz_A 237 HRPTAVFCGGDIMAMGALCAADEMGLR 263 (340)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 456899999999999999999998864
No 418
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=46.34 E-value=8.1 Score=36.34 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=19.9
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHhh
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~~ 209 (448)
.+.-+.+++++|+|||+ ++-.|..++.
T Consensus 99 ~g~vi~lvG~nGsGKTT--ll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTT--SLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHH--HHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHH--HHHHHHHHHH
Confidence 45568899999999999 4455655554
No 419
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=45.92 E-value=7.6 Score=37.48 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.8
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
...+++.+|+|+|||...
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 567999999999999854
No 420
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=45.79 E-value=6.4 Score=38.77 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=13.2
Q ss_pred eeEeccCCCCcchhh
Q 013189 185 LMACAQTGSGKTAAF 199 (448)
Q Consensus 185 ~li~a~TGsGKT~~~ 199 (448)
++|++|||+|||...
T Consensus 5 i~i~GptgsGKttla 19 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEECSSSSHHHHH
T ss_pred EEEECcchhhHHHHH
Confidence 689999999999864
No 421
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=45.78 E-value=6 Score=33.33 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.2
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
+.-++++++.|||||+..
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456889999999999954
No 422
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=45.74 E-value=13 Score=34.28 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=33.5
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCC-CeEEecCCCCHH
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGF-PATTIHGDRTQQ 441 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~-~~~~iHg~~~q~ 441 (448)
..++++||.+-..|...+.+|...|+ +|..+.|++..-
T Consensus 181 dk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~aW 219 (265)
T 4f67_A 181 DKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILNY 219 (265)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHHH
T ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHHHH
Confidence 67899999999999999999999999 588999987643
No 423
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=45.65 E-value=1.3e+02 Score=26.45 Aligned_cols=27 Identities=7% Similarity=-0.145 Sum_probs=23.0
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..++.|||.+...|..+.+.|...|+.
T Consensus 180 ~~~~ai~~~~d~~a~g~~~al~~~g~~ 206 (275)
T 3d8u_A 180 SSLNALVCSHEEIAIGALFECHRRVLK 206 (275)
T ss_dssp TTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHcCCC
Confidence 346789999999999999999998864
No 424
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=45.24 E-value=6.7 Score=37.97 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.3
Q ss_pred CeeEeccCCCCcchhhh
Q 013189 184 DLMACAQTGSGKTAAFC 200 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~ 200 (448)
-.+++++||+|||..+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47799999999999653
No 425
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=45.23 E-value=21 Score=39.76 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=50.5
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhc-CCcEEEeC---hhHHHHHHhcccccCCCe-
Q 013189 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVAT---PGRLVDLLERARVSLQMI- 298 (448)
Q Consensus 224 ~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~T---P~~L~~~l~~~~~~l~~v- 298 (448)
.++||.|+|+.-|..+++.+++. +++..++|+.. .....+.. ..+||||| .. .+. ..+++..|
T Consensus 276 ~~~LVF~~t~~~a~~l~~~L~~~-----~~v~~lhg~~~--~~l~~F~~G~~~VLVaTas~Td----v~~-rGIDip~VI 343 (1054)
T 1gku_B 276 TGGIIYARTGEEAEEIYESLKNK-----FRIGIVTATKK--GDYEKFVEGEIDHLIGTAHYYG----TLV-RGLDLPERI 343 (1054)
T ss_dssp SCEEEEESSHHHHHHHHHTTTTS-----SCEEECTTSSS--HHHHHHHHTSCSEEEEECC-----------CCSCCTTTC
T ss_pred CCEEEEEcCHHHHHHHHHHHhhc-----cCeeEEeccHH--HHHHHHHcCCCcEEEEecCCCC----eeE-eccccCCcc
Confidence 56999999999998888877764 67888888874 23333443 47999994 33 222 36789995
Q ss_pred eEEEEecCC
Q 013189 299 RYLALDEAD 307 (448)
Q Consensus 299 ~~lVlDEah 307 (448)
++||.=.+.
T Consensus 344 ~~VI~~~~P 352 (1054)
T 1gku_B 344 RFAVFVGCP 352 (1054)
T ss_dssp CEEEEESCC
T ss_pred cEEEEeCCC
Confidence 998877666
No 426
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=44.94 E-value=9 Score=34.98 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=17.1
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.++.++++++.|||||+..
T Consensus 47 ~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TTCCEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4899999999999999964
No 427
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=44.78 E-value=7.2 Score=33.33 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=13.5
Q ss_pred CeeEeccCCCCcchhh
Q 013189 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~li~a~TGsGKT~~~ 199 (448)
-+++++++|+|||+..
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4678999999999954
No 428
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=44.78 E-value=6.2 Score=35.65 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=20.0
Q ss_pred hcCCCeeEeccCCCCcchhhhhhHHHHHh
Q 013189 180 IGGRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 180 ~~g~d~li~a~TGsGKT~~~~lpil~~l~ 208 (448)
..|.-+.+.+++|||||+ ++=+|..++
T Consensus 29 ~~Ge~~~i~G~nGsGKST--Ll~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSS--LLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHH--HHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHhcCC
Confidence 367778999999999999 444454443
No 429
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=44.74 E-value=10 Score=32.99 Aligned_cols=24 Identities=21% Similarity=0.095 Sum_probs=16.9
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHH
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l 207 (448)
+.-+.+.+++|||||+.. -+|..+
T Consensus 6 ~~~i~i~G~~GsGKSTl~--~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA--QALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHH--HHHHHH
T ss_pred cEEEEEECCCCCCHHHHH--HHHHHH
Confidence 344779999999999943 344444
No 430
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.50 E-value=5.2 Score=39.75 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=30.7
Q ss_pred CCCCcccCCCCHHHHHHHHHC---CCCCCCHHHHhHhhhHhcCCCeeEeccCCCCcchhh
Q 013189 143 AVNTFAEIDLGEALNLNIRRC---KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 143 ~~~~f~~~~l~~~l~~~l~~~---~~~~pt~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 199 (448)
|..+|++.+=-+.+++.|.+. .+..|--++..-+ ..-+-+++.+|.|+|||+..
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHH
Confidence 445788886545555555432 1112222222221 12366999999999999853
No 431
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=44.40 E-value=5 Score=34.96 Aligned_cols=23 Identities=26% Similarity=0.099 Sum_probs=17.5
Q ss_pred hhHhcCCCeeEeccCCCCcchhh
Q 013189 177 PISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 177 ~~i~~g~d~li~a~TGsGKT~~~ 199 (448)
+.+..+.-+.+.+++|||||+..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHH
Confidence 34445566889999999999854
No 432
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=43.86 E-value=8.3 Score=32.44 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=19.1
Q ss_pred cCCCeeEeccCCCCcchhhhhhHHHHHh
Q 013189 181 GGRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~~lpil~~l~ 208 (448)
.|.-+.+.++.|+|||+ ++-+|..++
T Consensus 32 ~Ge~v~L~G~nGaGKTT--Llr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTT--LTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHHhC
Confidence 55668899999999999 444555444
No 433
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=43.77 E-value=1.8e+02 Score=25.98 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=23.0
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..++-|||.+...|..+.+.|+..|+.
T Consensus 194 ~~~~ai~~~~d~~A~g~~~al~~~G~~ 220 (289)
T 2fep_A 194 KKPTAILSATDEMALGIIHAAQDQGLS 220 (289)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCEEEECCHHHHHHHHHHHHHcCCC
Confidence 456899999999999999999988864
No 434
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=43.72 E-value=6.9 Score=33.96 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=16.1
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.+.-+++.++.|||||+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5667899999999999854
No 435
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=43.65 E-value=28 Score=30.45 Aligned_cols=41 Identities=22% Similarity=0.166 Sum_probs=30.1
Q ss_pred CccEEEEeCchHHHHHHHHHHHH---CCCCeEEecCCCCHHHHH
Q 013189 404 QALTLVFVETKKGADALEHWLYM---NGFPATTIHGDRTQQRTS 444 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~---~g~~~~~iHg~~~q~eR~ 444 (448)
+.++||.|+|++-|.++++.+.. .++.+..++|+.+..++.
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQI 137 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CH
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHH
Confidence 66799999999999999999877 478899999987765443
No 436
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=43.65 E-value=5.7 Score=33.74 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=15.6
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.+.-++++++.|||||+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456899999999999954
No 437
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=43.54 E-value=95 Score=34.41 Aligned_cols=39 Identities=5% Similarity=0.011 Sum_probs=29.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcc--------cCCcEEEEEECC
Q 013189 222 VYPLALILAPTRELSSQIHVEAKKFSY--------QTGVKVVVAYGG 260 (448)
Q Consensus 222 ~~~~~lil~PtreLa~qi~~~~~~~~~--------~~~~~~~~~~gg 260 (448)
.+.++||+|.+++-|..+++.+.++.. ...+++.+++.+
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~ 582 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSF 582 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeC
Confidence 345799999999999999999988752 123566555544
No 438
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=43.41 E-value=8.8 Score=43.80 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=21.8
Q ss_pred CCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
.+-++||+||+-.-+|..-+..+...+..+
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~ 572 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKA 572 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 456789999999888865555566666554
No 439
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=43.41 E-value=40 Score=33.75 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=30.5
Q ss_pred CccEEEEeCchHHHHHHHHHHHHC----CCCeEEecCCCCHHHH
Q 013189 404 QALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQRT 443 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~----g~~~~~iHg~~~q~eR 443 (448)
..++||.|+|+.-+.++++.+... ++.+..+||+.+..++
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 98 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS 98 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----C
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchh
Confidence 567999999999999888887664 8999999999876543
No 440
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=43.12 E-value=1.8e+02 Score=26.76 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 385 RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 385 ~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
...+.++|... ..++-|||.+...|..+.+.|...|+.
T Consensus 235 ~~~~~~ll~~~--------~~~~ai~~~nd~~A~g~~~al~~~g~~ 272 (344)
T 3kjx_A 235 REMTQAMLERS--------PDLDFLYYSNDMIAAGGLLYLLEQGID 272 (344)
T ss_dssp HHHHHHHHHHS--------TTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcC--------CCCCEEEECCHHHHHHHHHHHHHcCCC
Confidence 34455566543 456899999999999999999998864
No 441
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=43.01 E-value=7.7 Score=36.01 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=15.1
Q ss_pred CCeeEeccCCCCcchhhh
Q 013189 183 RDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~~ 200 (448)
..+++.+|+|+|||....
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 369999999999998643
No 442
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=42.91 E-value=1.5e+02 Score=24.77 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCeEEecCC
Q 013189 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGD 437 (448)
Q Consensus 383 ~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~ 437 (448)
+-...+.+.+... .. + ...+-|.|.+..++..+.+.|...|+++..+..+
T Consensus 45 ~e~~~i~~~I~~~-~~---g-~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~ 94 (174)
T 3dmn_A 45 AGVDQVVDQLAMN-DS---E-RDTTAIIGKSLAECEALTKALKARGEQVTLIQTE 94 (174)
T ss_dssp HHHHHHHHHHHHH-HH---T-TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSC
T ss_pred HHHHHHHHHHHHh-cc---C-CCcEEEEecCHHHHHHHHHHHHHcCCcceeeccc
Confidence 3344555555542 11 1 4558899999999999999999998888766653
No 443
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=42.83 E-value=1.8e+02 Score=25.93 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=23.5
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..++-|||.+...|..+.+.|+..|+.
T Consensus 186 ~~~~ai~~~nd~~A~g~~~al~~~G~~ 212 (294)
T 3qk7_A 186 VPPTAIITDCNMLGDGVASALDKAGLL 212 (294)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCS
T ss_pred CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 456899999999999999999998865
No 444
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=42.73 E-value=8 Score=33.48 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.7
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
+-++++++.|||||+..
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999954
No 445
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=42.66 E-value=8.3 Score=35.88 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=14.5
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
.-++++++.|||||+..
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34899999999999954
No 446
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=42.62 E-value=6.6 Score=35.72 Aligned_cols=42 Identities=26% Similarity=0.277 Sum_probs=29.7
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEecc
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
+.+-++|++||.-.-+|......+..++..+. ... +++++.-
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~----~g~-tviivtH 202 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKIC----KGR-TVIIIAH 202 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH----TTS-EEEEECS
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc----CCC-EEEEEeC
Confidence 45678999999999888766677777777762 223 5555544
No 447
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=42.50 E-value=6.8 Score=36.36 Aligned_cols=31 Identities=29% Similarity=0.237 Sum_probs=24.1
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+.+-++|++||--.-||......+..++..+
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l 189 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEM 189 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 5667899999999888876666677777666
No 448
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=42.15 E-value=7.8 Score=37.24 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=16.2
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
..+.+++.+++|+|||+..
T Consensus 116 ~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3567999999999999854
No 449
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=42.13 E-value=7.2 Score=36.89 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=15.4
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
..++++.+++|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 456999999999999854
No 450
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=42.08 E-value=7.3 Score=35.75 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=29.0
Q ss_pred CCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEecc
Q 013189 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
.+-++|++||.-.-+|......+..++..+. ... +++++.-
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~----~~~-tviivtH 212 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLR----KNR-TLIIIAH 212 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHT----TTS-EEEEECS
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhc----CCC-EEEEEcC
Confidence 4457899999999888766777777777772 233 5665544
No 451
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=41.95 E-value=12 Score=32.80 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=17.1
Q ss_pred CeeEeccCCCCcchhhhhhHHHHHhh
Q 013189 184 DLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~lpil~~l~~ 209 (448)
-.++.+++|+|||..+ -+|..++.
T Consensus 25 ~~~I~G~NgsGKStil--~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL--DAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHHH--HHHHHHHH
T ss_pred eEEEEcCCCCCHHHHH--HHHHHHhc
Confidence 4688999999999953 34444443
No 452
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=41.66 E-value=6.7 Score=35.04 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=20.8
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+.+-+++++||--.-+|......+..++..+
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l 186 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKI 186 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 4556778888887777765555666666555
No 453
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=41.58 E-value=11 Score=46.27 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHh-Hh---hhHhcCCCeeEeccCCCCcchhhh
Q 013189 152 LGEALNLNIRRCKYVKPTPVQRH-AI---PISIGGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 152 l~~~l~~~l~~~~~~~pt~~Q~~-~i---~~i~~g~d~li~a~TGsGKT~~~~ 200 (448)
+...+.+.+.+.++. +++.+.. ++ ..+...+.+|+++|||||||.++-
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 456677777777764 5555432 22 233456679999999999999764
No 454
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=41.55 E-value=14 Score=32.88 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=32.3
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCH
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
..++||||.+-..+...+..|...|.++..|.|++..
T Consensus 184 ~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~~ 220 (230)
T 2eg4_A 184 GQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMHE 220 (230)
T ss_dssp TCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHHH
T ss_pred CCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHHH
Confidence 6789999999999999999999999678888887654
No 455
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=41.46 E-value=6 Score=33.82 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=16.6
Q ss_pred CeeEeccCCCCcchhhhhhHHHHHhh
Q 013189 184 DLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~lpil~~l~~ 209 (448)
-+.+++++|||||+. +-+|..++.
T Consensus 4 ~v~IvG~SGsGKSTL--~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL--ITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHH--HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHHhh
Confidence 366889999999995 334444443
No 456
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=41.42 E-value=39 Score=30.13 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=21.9
Q ss_pred ChhHHHHHHhcccccCCCeeEEEEecCC
Q 013189 280 TPGRLVDLLERARVSLQMIRYLALDEAD 307 (448)
Q Consensus 280 TP~~L~~~l~~~~~~l~~v~~lVlDEah 307 (448)
||..+.+.|-+..++.++|.++-+||--
T Consensus 44 tp~~~y~~L~~~~idw~~v~~f~~DEr~ 71 (226)
T 3lwd_A 44 TPKPFFTSLAAKALPWARVDVTLADERW 71 (226)
T ss_dssp TTHHHHHHHHTSCSCGGGEEEEESEEES
T ss_pred CHHHHHHHHHhcCCCchhEEEEEeeecc
Confidence 5666666666677889999999999943
No 457
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=41.14 E-value=1.2e+02 Score=27.29 Aligned_cols=27 Identities=19% Similarity=0.090 Sum_probs=23.5
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..++-|||.+...|..+.+.|...|+.
T Consensus 184 ~~~~ai~~~~d~~A~g~~~al~~~g~~ 210 (289)
T 3k9c_A 184 TPPTAVVAFNDRCATGVLDLLVRSGRD 210 (289)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 456899999999999999999998864
No 458
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=41.04 E-value=50 Score=33.39 Aligned_cols=125 Identities=16% Similarity=0.138 Sum_probs=0.0
Q ss_pred HhcCCCeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEE
Q 013189 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAY 258 (448)
Q Consensus 179 i~~g~d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~ 258 (448)
+..|.-+++.+++|+|||......+-....... .++..-..+...|+...+..+...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~--------------~vi~~~~ee~~~~l~~~~~~~g~~--------- 334 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKE--------------RAILFAYEESRAQLLRNAYSWGMD--------- 334 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC--------------CEEEEESSSCHHHHHHHHHTTSCC---------
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCC--------------CEEEEEEeCCHHHHHHHHHHcCCC---------
Q ss_pred CCCCHHHHHHHHhcCCcEEE-------eChhHHHHHHhcccccCCCeeEEEEecCCccCcCC-----CHHHHHHHHHHcC
Q 013189 259 GGAPINQQLRELERGVDILV-------ATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG-----FEPQIRKIVQQMD 326 (448)
Q Consensus 259 gg~~~~~~~~~l~~~~~Ilv-------~TP~~L~~~l~~~~~~l~~v~~lVlDEah~ll~~g-----f~~~i~~i~~~l~ 326 (448)
...+...-.+-+ .+.|.....+....+ ..+.++|||| -=.-++.. ....+..++..+.
T Consensus 335 --------~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l-~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~ 404 (525)
T 1tf7_A 335 --------FEEMERQNLLKIVCAYPESAGLEDHLQIIKSEIN-DFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAK 404 (525)
T ss_dssp --------HHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHH-TTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHhCCCEEEEEeccccCCHHHHHHHHHHHHH-hhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHH
Q ss_pred CCCCCCceEEEEe
Q 013189 327 MPPPGMRQTMLFS 339 (448)
Q Consensus 327 ~~~~~~~q~i~~S 339 (448)
....-+|+.|
T Consensus 405 ---~~g~tvilvs 414 (525)
T 1tf7_A 405 ---QEEITGLFTN 414 (525)
T ss_dssp ---HTTCEEEEEE
T ss_pred ---hCCCEEEEEE
No 459
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=40.93 E-value=32 Score=30.20 Aligned_cols=41 Identities=20% Similarity=0.106 Sum_probs=32.0
Q ss_pred CccEEEEeCchHHHHHHHHHHHHC----CCCeEEecCCCCHHHHH
Q 013189 404 QALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQRTS 444 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~----g~~~~~iHg~~~q~eR~ 444 (448)
+.++||.|+|+.-|.++++.+... ++.+..+||+.+..+..
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 141 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 141 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHH
Confidence 567999999999999999988764 47899999988765443
No 460
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=40.76 E-value=42 Score=28.76 Aligned_cols=43 Identities=14% Similarity=0.263 Sum_probs=33.0
Q ss_pred CccEEEEeCc-----------hHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 404 QALTLVFVET-----------KKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 404 ~~~~IIF~~t-----------~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+.+|||.|. ...|+.|++.|+..||.|. +|-+++..+-.++|
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l 96 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTEL 96 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHH
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHH
Confidence 3568888876 4788999999999999975 56778877766554
No 461
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=40.70 E-value=9.8 Score=33.26 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=21.0
Q ss_pred CHHHHhHhhhHhcCCCeeEeccCCCCcchhh
Q 013189 169 TPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 169 t~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 199 (448)
++.+... ..+..+.-++++++.|||||+..
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 3444444 23446777999999999999854
No 462
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=40.65 E-value=9.8 Score=32.43 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=16.1
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.+.-++++++.|||||+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999954
No 463
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=40.46 E-value=15 Score=33.58 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=32.1
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC-eEEecCCCCH
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~-~~~iHg~~~q 440 (448)
..++||||.+-..+...+..|...|++ +..|.|++..
T Consensus 223 ~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 260 (271)
T 1e0c_A 223 DKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGE 260 (271)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHHH
Confidence 678999999988899999999999995 8888887643
No 464
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=40.42 E-value=6.4 Score=35.64 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=24.3
Q ss_pred CCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
.+-+++++||.-.-+|......+..++..+
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 185 (243)
T 1mv5_A 156 RNPKILMLDEATASLDSESESMVQKALDSL 185 (243)
T ss_dssp HCCSEEEEECCSCSSCSSSCCHHHHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHh
Confidence 445789999999999987777777777776
No 465
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=40.40 E-value=7.8 Score=35.42 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=24.2
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+.+-++|++||--.-+|......+..++..+
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 199 (257)
T 1g6h_A 169 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199 (257)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 4567899999999888876667777777766
No 466
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=40.17 E-value=11 Score=36.37 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=19.3
Q ss_pred CCCeeEeccCCCCcchhhhhhHHHHHhh
Q 013189 182 GRDLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~~lpil~~l~~ 209 (448)
+.-+.+++++|+|||+. +-.|..++.
T Consensus 157 g~vi~lvG~nGsGKTTl--l~~Lag~l~ 182 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTS--LGKLAHRLK 182 (359)
T ss_dssp SEEEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHH--HHHHHhhcc
Confidence 45588999999999994 455655554
No 467
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=40.11 E-value=8.9 Score=33.00 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=16.0
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.+.-++++++.|||||+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567899999999999954
No 468
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=39.95 E-value=7.9 Score=35.56 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=24.3
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+.+-++|++||--.-||......+..++..+
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l 199 (262)
T 1b0u_A 169 AMEPDVLLFDEPTSALDPELVGEVLRIMQQL 199 (262)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 4567899999999888876667777777666
No 469
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=39.93 E-value=7.9 Score=35.77 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=0.0
Q ss_pred HhcCCCeeEeccCCCCcchhhhhhHHHHHhh
Q 013189 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 179 i~~g~d~li~a~TGsGKT~~~~lpil~~l~~ 209 (448)
+..|.-+.+.+++|||||+ ++=+|..++.
T Consensus 42 i~~Ge~~~i~G~nGsGKST--Llk~l~Gl~~ 70 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKST--VAALLQNLYQ 70 (271)
T ss_dssp ECTTCEEEEECSTTSSHHH--HHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHH--HHHHHhcCCC
No 470
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=39.85 E-value=9.4 Score=31.82 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.4
Q ss_pred CCeeEeccCCCCcchhhh
Q 013189 183 RDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~~ 200 (448)
+++++.+..|||||++.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 578999999999999643
No 471
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=39.85 E-value=57 Score=34.83 Aligned_cols=64 Identities=13% Similarity=0.137 Sum_probs=39.1
Q ss_pred cccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHC----CCCeEEecCCCCHHHH
Q 013189 380 HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQRT 443 (448)
Q Consensus 380 ~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~----g~~~~~iHg~~~q~eR 443 (448)
....|.....-.+.........+...++||.|+++.-+.++.+.|... ++.+..+||+.+..++
T Consensus 272 TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 339 (797)
T 4a2q_A 272 TGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS 339 (797)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----C
T ss_pred CCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhh
Confidence 345565443333333222222222678999999999999888877664 8999999999876653
No 472
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=39.74 E-value=47 Score=28.20 Aligned_cols=41 Identities=15% Similarity=0.107 Sum_probs=33.6
Q ss_pred CccEEEEeCchHHHHHHHHHHHHC-----CCCeEEecCCCCHHHHH
Q 013189 404 QALTLVFVETKKGADALEHWLYMN-----GFPATTIHGDRTQQRTS 444 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~-----g~~~~~iHg~~~q~eR~ 444 (448)
..++||.|+|+.-+.++++.+... ++.+..++|+.+..+..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 116 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI 116 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH
Confidence 457999999999999998887653 67899999998876544
No 473
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=39.68 E-value=41 Score=31.50 Aligned_cols=42 Identities=14% Similarity=0.269 Sum_probs=35.3
Q ss_pred ccEEEEeCc-----------hHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 405 ALTLVFVET-----------KKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 405 ~~~IIF~~t-----------~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+.+|||+|. ...|+.|++.|+..||.|. +|-+++.++-.++|
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l 113 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTEL 113 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHH
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHH
Confidence 569999998 6789999999999999975 66688888776665
No 474
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=39.66 E-value=61 Score=36.24 Aligned_cols=41 Identities=5% Similarity=-0.095 Sum_probs=36.3
Q ss_pred CccEEEEeCchHHHHHHHHHHHH---CCCCeEEecCCCCHHHHH
Q 013189 404 QALTLVFVETKKGADALEHWLYM---NGFPATTIHGDRTQQRTS 444 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~---~g~~~~~iHg~~~q~eR~ 444 (448)
+.++||.++|+.-|.++++.|.. .++.+..+||+.+..+|.
T Consensus 121 ~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~ 164 (1104)
T 4ddu_A 121 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKE 164 (1104)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHH
T ss_pred CCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHH
Confidence 67899999999999999999988 578999999999886553
No 475
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=39.61 E-value=2.3e+02 Score=26.01 Aligned_cols=27 Identities=11% Similarity=-0.090 Sum_probs=23.2
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..++-|||.+...|..+.+.|...|+.
T Consensus 238 ~~~~ai~~~nD~~A~g~~~al~~~G~~ 264 (339)
T 3h5o_A 238 PDCDALFCCNDDLAIGALARSQQLGIA 264 (339)
T ss_dssp TTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEECChHHHHHHHHHHHHcCCC
Confidence 456889999999999999999998864
No 476
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=39.60 E-value=5.6 Score=37.62 Aligned_cols=41 Identities=29% Similarity=0.309 Sum_probs=28.0
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHcCCCCCCCceEEEEec
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
+.+-++||+||.=.-+|......+..++..+. ..+ ++++.+
T Consensus 206 ~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~----~~~-Tvi~it 246 (306)
T 3nh6_A 206 LKAPGIILLDEATSALDTSNERAIQASLAKVC----ANR-TTIVVA 246 (306)
T ss_dssp HHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH----TTS-EEEEEC
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHc----CCC-EEEEEE
Confidence 34567899999998888766667777776662 233 555544
No 477
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=39.59 E-value=8 Score=35.59 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=0.0
Q ss_pred HhcCCCeeEeccCCCCcchhhhhhHHHHHhh
Q 013189 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 179 i~~g~d~li~a~TGsGKT~~~~lpil~~l~~ 209 (448)
+..|.-+.+.+|+|||||+ ++=+|..++.
T Consensus 47 i~~Gei~~liG~NGsGKST--Llk~l~Gl~~ 75 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKST--FLRCLNLLED 75 (263)
T ss_dssp ECTTCEEEEECCTTSSHHH--HHHHHTTSSC
T ss_pred EcCCCEEEEEcCCCCcHHH--HHHHHHcCCC
No 478
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=39.57 E-value=11 Score=31.80 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=14.1
Q ss_pred CeeEeccCCCCcchhh
Q 013189 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~li~a~TGsGKT~~~ 199 (448)
.++++++.|||||+..
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5889999999999854
No 479
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=39.49 E-value=56 Score=35.00 Aligned_cols=43 Identities=14% Similarity=-0.096 Sum_probs=36.4
Q ss_pred CccEEEEeCchHHHHHHHHHHHH----CCCCeEEecCCCCHHHHHHH
Q 013189 404 QALTLVFVETKKGADALEHWLYM----NGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~----~g~~~~~iHg~~~q~eR~~~ 446 (448)
+.+++|.|+|+.-|.++++.+.. .++++..+||+++..+|.++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~ 463 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKI 463 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHH
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHH
Confidence 56799999999999888877754 37999999999999888654
No 480
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=39.47 E-value=99 Score=28.11 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=48.5
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHH---hcC--Cc-EEEeChhHHHHHHhcccccCCCe
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ERG--VD-ILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~~--~~-Ilv~TP~~L~~~l~~~~~~l~~v 298 (448)
++||.+.++..+..+.+.+.+. .++.+..++|+.+..+....+ ..+ +. +|++| ... ...+++..+
T Consensus 114 kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st-~~~-----g~Glnl~~a 184 (271)
T 1z5z_A 114 KIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV-KAG-----GFGINLTSA 184 (271)
T ss_dssp CEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC-CTT-----CCCCCCTTC
T ss_pred eEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh-hhh-----cCCcCcccC
Confidence 5999999999998888888762 146677788988865554433 333 45 45555 221 235678888
Q ss_pred eEEEEecC
Q 013189 299 RYLALDEA 306 (448)
Q Consensus 299 ~~lVlDEa 306 (448)
++||+=+.
T Consensus 185 ~~VI~~d~ 192 (271)
T 1z5z_A 185 NRVIHFDR 192 (271)
T ss_dssp SEEEECSC
T ss_pred CEEEEECC
Confidence 88876444
No 481
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=39.39 E-value=9.4 Score=32.46 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=14.9
Q ss_pred CCCeeEeccCCCCcchhh
Q 013189 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~li~a~TGsGKT~~~ 199 (448)
+.-++++++.|||||+..
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999954
No 482
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=39.28 E-value=12 Score=36.04 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=0.0
Q ss_pred eeEeccCCCCcchhhhhhHHHHHh
Q 013189 185 LMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 185 ~li~a~TGsGKT~~~~lpil~~l~ 208 (448)
.+++++||+|||. ++=++..++
T Consensus 28 ~vi~G~NGaGKT~--ileAI~~~l 49 (371)
T 3auy_A 28 VAIIGENGSGKSS--IFEAVFFAL 49 (371)
T ss_dssp EEEEECTTSSHHH--HHHHHHHHH
T ss_pred EEEECCCCCCHHH--HHHHHHHHH
No 483
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=39.17 E-value=9.9 Score=32.27 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=14.5
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
.-++++++.|||||+..
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999964
No 484
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=39.06 E-value=30 Score=39.03 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=39.0
Q ss_pred CeeEeccCCCCcchhhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013189 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 184 d~li~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~qi~~~~~~ 245 (448)
..+|.|.-|||||.+..-=++..++..+... .......-.++|+|+=|+.-|..+.+++.+
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~-~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSA-AFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSS-SCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCccc-ccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 4499999999999986555555554321000 000001223599999999988888777765
No 485
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=38.85 E-value=1.8e+02 Score=25.93 Aligned_cols=182 Identities=8% Similarity=-0.033 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcccCCcEEEEEECCC--CHHHHHHH----HhcCCcEEEeChhHHH---HHHhcccccCCCeeEEEEecCC
Q 013189 237 SQIHVEAKKFSYQTGVKVVVAYGGA--PINQQLRE----LERGVDILVATPGRLV---DLLERARVSLQMIRYLALDEAD 307 (448)
Q Consensus 237 ~qi~~~~~~~~~~~~~~~~~~~gg~--~~~~~~~~----l~~~~~Ilv~TP~~L~---~~l~~~~~~l~~v~~lVlDEah 307 (448)
.++..-+++.+...++.+.++.... ....+... +..++|-||..|.... ..++ .+. ..+-+|++|...
T Consensus 21 ~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~--~~~-~~iPvV~~~~~~ 97 (304)
T 3o1i_D 21 LSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLK--SWV-GNTPVFATVNQL 97 (304)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHH--HHT-TTSCEEECSSCC
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHH--HHc-CCCCEEEecCCC
Confidence 3444444444444577777777665 54444333 3357887776553321 1222 123 567778886432
Q ss_pred c-----------cCcCCCHHHHHHHHHHcCCCC---CCCceEEEEeccCChH----HHHHHHHhhcCcEEEEeccccCcc
Q 013189 308 R-----------MLDMGFEPQIRKIVQQMDMPP---PGMRQTMLFSATFPKE----IQRLASDFLANYIFLAVGRVGSST 369 (448)
Q Consensus 308 ~-----------ll~~gf~~~i~~i~~~l~~~~---~~~~q~i~~SAT~~~~----v~~l~~~~l~~~~~i~v~~~~~~~ 369 (448)
. ..............++|.... ...+++.+++...... -..-....+.++ .+.+...
T Consensus 98 ~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~-~~~~~~~---- 172 (304)
T 3o1i_D 98 DLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPVTTGFYEAIKNS-DIHIVDS---- 172 (304)
T ss_dssp CCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHHHHHHHHTTTTB-TEEEEEC----
T ss_pred cccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHHHHHHHHHHhcC-CCEEEEe----
Confidence 1 112223344444555553222 1156777776643211 111122233321 1111000
Q ss_pred cceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCC--CeEEecCCCCHH
Q 013189 370 DLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGF--PATTIHGDRTQQ 441 (448)
Q Consensus 370 ~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~--~~~~iHg~~~q~ 441 (448)
.........-...+.++| .. ...+. ||.+...|..+.+.|+..|+ ++..+.-+.++.
T Consensus 173 -----~~~~~~~~~~~~~~~~~l-~~--------~~~~a-i~~~d~~a~g~~~al~~~g~~~di~vvg~d~~p~ 231 (304)
T 3o1i_D 173 -----FWADNDKELQRNLVQRVI-DM--------GNIDY-IVGSAVAIEAAISELRSADKTHDIGLVSVYLSHG 231 (304)
T ss_dssp -----CCCCSCHHHHHHHHHHHH-HH--------SCCSE-EEECHHHHHHHHHHHTTTTCGGGSEEBCSSCCHH
T ss_pred -----ecCCCcHHHHHHHHHHHH-cC--------CCCCE-EEecCcchHHHHHHHHhcCCCCCeEEEEeCCCHH
Confidence 000001122234455566 43 23344 56677889999999999988 555555555543
No 486
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=38.67 E-value=2.1e+02 Score=25.31 Aligned_cols=27 Identities=11% Similarity=0.026 Sum_probs=21.7
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..+..|||.+...|..+.+.|...|+.
T Consensus 199 ~~~~ai~~~~d~~a~g~~~al~~~g~~ 225 (296)
T 3brq_A 199 AKFSALVASNDDMAIGAMKALHERGVA 225 (296)
T ss_dssp -CCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred CCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 345789999999999999999887754
No 487
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=38.62 E-value=10 Score=33.67 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=0.0
Q ss_pred HhcCCCeeEeccCCCCcchhh
Q 013189 179 SIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 179 i~~g~d~li~a~TGsGKT~~~ 199 (448)
+..|.-+.+.+|+|||||+..
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
No 488
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=38.55 E-value=42 Score=30.85 Aligned_cols=43 Identities=21% Similarity=0.143 Sum_probs=34.3
Q ss_pred CccEEEEeC---------------------chHHHHHHHHHHHHCCCCeEEecCCCCHHHHHHHh
Q 013189 404 QALTLVFVE---------------------TKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 404 ~~~~IIF~~---------------------t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+.+|||+| +...++.|.+.|+..||.|. ++-+++.++-.++|
T Consensus 17 rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l 80 (271)
T 3h11_B 17 RGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIK-PHDDCTVEQIYEIL 80 (271)
T ss_dssp CCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHH
T ss_pred CCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHH
Confidence 466888888 55789999999999999865 56788888776655
No 489
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=38.50 E-value=3.3e+02 Score=28.44 Aligned_cols=41 Identities=15% Similarity=0.091 Sum_probs=32.3
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCCeEEecCCCCHHHHHH
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSI 445 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~ 445 (448)
..-+-|.|.+...+..+.+.|...|+++....| .+-.+|..
T Consensus 351 ~~diAIL~R~~~~~~~le~~L~~~gIPy~~~g~-~~f~~~~e 391 (724)
T 1pjr_A 351 YRDFAVLYRTNAQSRVMEEMLLKANIPYQIVGG-LKFYDRKE 391 (724)
T ss_dssp GGGEEEEESSGGGHHHHHHHHHHTTCCEEEETS-CCGGGSHH
T ss_pred hhheeeeeecchhHHHHHHHHHHcCCCEEEeCC-cchhhCHH
Confidence 345889999999999999999999999877654 55545443
No 490
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=38.45 E-value=13 Score=38.48 Aligned_cols=16 Identities=13% Similarity=0.418 Sum_probs=14.6
Q ss_pred CeeEeccCCCCcchhh
Q 013189 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~li~a~TGsGKT~~~ 199 (448)
++++.+++|+|||...
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999853
No 491
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=38.31 E-value=2.1e+02 Score=25.30 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=25.6
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCC-CeEEec
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGF-PATTIH 435 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~-~~~~iH 435 (448)
...+.|||.+...|..+.+.|...|+ .+..+-
T Consensus 194 ~~~~ai~~~~d~~a~g~~~al~~~g~~di~vig 226 (293)
T 3l6u_A 194 IPFDAVYCHNDDIAMGVLEALKKAKISGKIVVG 226 (293)
T ss_dssp CCCSEEEESSHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCCCEEEECCchHHHHHHHHHHhCCCCCeEEEE
Confidence 45679999999999999999999988 444443
No 492
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=38.16 E-value=11 Score=32.25 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=15.8
Q ss_pred cCCCeeEeccCCCCcchhh
Q 013189 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~li~a~TGsGKT~~~ 199 (448)
.+.-++++++.|||||+..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3566899999999999854
No 493
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=38.04 E-value=1.1e+02 Score=27.34 Aligned_cols=27 Identities=19% Similarity=-0.077 Sum_probs=22.8
Q ss_pred CccEEEEeCchHHHHHHHHHHHHCCCC
Q 013189 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~~IIF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..+..|||.+...|..+.+.|...|+.
T Consensus 186 ~~~~ai~~~~d~~a~g~~~al~~~G~~ 212 (289)
T 1dbq_A 186 HRPTAVFCGGDIMAMGALCAADEMGLR 212 (289)
T ss_dssp SCCSEEEESCHHHHHHHHHHHHHTTCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCC
Confidence 456789999999999999999988864
No 494
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=37.92 E-value=8.6 Score=35.70 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=23.6
Q ss_pred CCCeeEEEEecCCccCcCCCHHHHHHHHHHc
Q 013189 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+.+-++|++||-=.-||......+..++..+
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l 207 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSL 207 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 4667899999999888876666666666665
No 495
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=37.46 E-value=11 Score=33.14 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=14.3
Q ss_pred CCeeEeccCCCCcchhh
Q 013189 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~li~a~TGsGKT~~~ 199 (448)
.-+.+.+++|||||+..
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999854
No 496
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=37.38 E-value=53 Score=36.72 Aligned_cols=72 Identities=7% Similarity=0.026 Sum_probs=47.1
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccC-----------------------------------CcEEEEEECCCCHHHHHHH
Q 013189 225 LALILAPTRELSSQIHVEAKKFSYQT-----------------------------------GVKVVVAYGGAPINQQLRE 269 (448)
Q Consensus 225 ~~lil~PtreLa~qi~~~~~~~~~~~-----------------------------------~~~~~~~~gg~~~~~~~~~ 269 (448)
.+||.++++.-|.+++..+..+.... ...+..++|+.....+...
T Consensus 443 ~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v 522 (1108)
T 3l9o_A 443 PVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVI 522 (1108)
T ss_dssp CEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHH
T ss_pred CEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHH
Confidence 59999999999999888876542211 0117888999987665543
Q ss_pred Hh----cCCcEEEeChhHHHHHHhcccccCCCeeEEE
Q 013189 270 LE----RGVDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 270 l~----~~~~Ilv~TP~~L~~~l~~~~~~l~~v~~lV 302 (448)
+. ...+|||||.- -...+++..+.+||
T Consensus 523 ~~~F~~G~ikVLVAT~v------la~GIDiP~v~~VI 553 (1108)
T 3l9o_A 523 EILFQEGFLKVLFATET------FSIGLNMPAKTVVF 553 (1108)
T ss_dssp HHHHHHTCCCEEEEESC------CCSCCCC--CEEEE
T ss_pred HHHHhCCCCeEEEECcH------HhcCCCCCCceEEE
Confidence 32 24789999941 22346777777755
No 497
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=37.29 E-value=11 Score=32.02 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=13.6
Q ss_pred CeeEeccCCCCcchhh
Q 013189 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~li~a~TGsGKT~~~ 199 (448)
-++++++.|||||+..
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999953
No 498
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=37.21 E-value=27 Score=31.88 Aligned_cols=36 Identities=11% Similarity=0.179 Sum_probs=0.0
Q ss_pred CCccEEEEeCc-hHHHHHHHHHHHHCCC-CeEEecCCC
Q 013189 403 KQALTLVFVET-KKGADALEHWLYMNGF-PATTIHGDR 438 (448)
Q Consensus 403 ~~~~~IIF~~t-~~~a~~l~~~L~~~g~-~~~~iHg~~ 438 (448)
+..++||||.+ ...+..++..|...|+ ++..+.|++
T Consensus 76 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 113 (277)
T 3aay_A 76 NEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGR 113 (277)
T ss_dssp TTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHH
T ss_pred CCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCH
No 499
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=37.12 E-value=2.5e+02 Score=25.75 Aligned_cols=187 Identities=7% Similarity=-0.014 Sum_probs=0.0
Q ss_pred CCCCCceEEEEcC--cHHHHHHHHHHHHHhcccCCcEEEEEECCCCHHHHHHHHhc----CCcEEEeChhHHHHHHhccc
Q 013189 219 SRTVYPLALILAP--TRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER----GVDILVATPGRLVDLLERAR 292 (448)
Q Consensus 219 ~~~~~~~~lil~P--treLa~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ilv~TP~~L~~~l~~~~ 292 (448)
.......+-+++| +...-.++..-+.+.+...++.+.++.... ...+...+.. ++|-||..|. -..
T Consensus 60 ~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~-------~~~ 131 (333)
T 3jvd_A 60 REHRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS-VQAQDVVMESLISIQAAGIIHVPV-------VGS 131 (333)
T ss_dssp ----CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS-HHHHHHHHHHHHHHTCSEEEECCC-------TTC
T ss_pred hcCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC-hHHHHHHHHHHHhCCCCEEEEcch-------HHH
Q ss_pred ccCCCeeEEEEecCCccCcCC-----CHHHHHHHHHHcCCCCCCCceEEEEeccCChHHHHHHHHhhcCcEEEEeccccC
Q 013189 293 VSLQMIRYLALDEADRMLDMG-----FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGS 367 (448)
Q Consensus 293 ~~l~~v~~lVlDEah~ll~~g-----f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~ 367 (448)
+.-..+-+|++|....-.... .........++|-. ...+++.+++..........-..-+.+...-.-..
T Consensus 132 ~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~--~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~--- 206 (333)
T 3jvd_A 132 IAPEGIPMVQLTRGELGPGFPRVLCDDEAGFFQLTESVLG--GSGMNIAALVGEESLSTTQERMRGISHAASIYGAE--- 206 (333)
T ss_dssp CC-CCSCEEEECC----CCSCEEEECHHHHHHHHHHHHCC--SSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE---
T ss_pred HhhCCCCEEEECccCCCCCCCEEEEChHHHHHHHHHHHHH--CCCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCCC---
Q ss_pred cccceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCccEEEEeCchHHHHHHHHHHHHCCCCe
Q 013189 368 STDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPA 431 (448)
Q Consensus 368 ~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~~IIF~~t~~~a~~l~~~L~~~g~~~ 431 (448)
....+.......-...+.++|... . ++-|||.+...|..+.+.|...|+.+
T Consensus 207 ----~~~~~~~~~~~~~~~~~~~ll~~~--------~-~~ai~~~nd~~A~g~~~al~~~G~~v 257 (333)
T 3jvd_A 207 ----VTFHFGHYSVESGEEMAQVVFNNG--------L-PDALIVASPRLMAGVMRAFTRLNVRV 257 (333)
T ss_dssp ----EEEEECCSSHHHHHHHHHHHHHTC--------C-CSEEEECCHHHHHHHHHHHHHTTCCT
T ss_pred ----EEEecCCCCHHHHHHHHHHHhcCC--------C-CcEEEECCHHHHHHHHHHHHHcCCCC
No 500
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=37.04 E-value=15 Score=36.74 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=0.0
Q ss_pred HhHhhhH--hcCCCeeEeccCCCCcchhh
Q 013189 173 RHAIPIS--IGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 173 ~~~i~~i--~~g~d~li~a~TGsGKT~~~ 199 (448)
...+..+ ....++++.+++|+|||...
T Consensus 190 ~~l~~~l~r~~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHH
Done!