Query 013190
Match_columns 448
No_of_seqs 289 out of 758
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 05:53:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013190.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013190hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 3.9E-35 1.3E-39 238.8 6.1 74 177-251 2-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 7.7E-35 2.6E-39 238.1 4.6 75 176-251 4-78 (78)
3 2rpr_A Flywch-type zinc finger 77.4 0.99 3.4E-05 36.1 1.9 51 188-251 23-75 (87)
4 2zxx_A Geminin; coiled-coil, c 29.9 12 0.00042 30.7 0.3 16 1-16 53-68 (79)
5 1xiw_B T-cell surface glycopro 26.0 37 0.0013 27.0 2.4 49 190-247 17-75 (79)
6 1cz6_A Protein (androctonin); 20.7 25 0.00087 23.0 0.4 8 211-218 16-23 (26)
7 1t2k_D Cyclic-AMP-dependent tr 14.5 84 0.0029 23.5 2.1 23 3-25 36-58 (61)
8 1xiw_A T-cell surface glycopro 14.1 59 0.002 27.8 1.2 61 176-247 22-101 (105)
9 2c9l_Y EB1, zebra, BZLF1 trans 12.8 91 0.0031 24.2 1.8 14 3-16 36-49 (63)
10 2yy0_A C-MYC-binding protein; 11.6 1.7E+02 0.0059 21.8 3.0 20 6-25 22-41 (53)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=3.9e-35 Score=238.79 Aligned_cols=74 Identities=53% Similarity=1.115 Sum_probs=71.7
Q ss_pred eEEEEecCCCCCCCCcchhhcccccccCCCCCCcccccccccCCcccccceeeecCCCcEEEEEecccCCCCCCc
Q 013190 177 RVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP 251 (448)
Q Consensus 177 RV~v~t~se~~~~~DGy~WRKYGQK~IKGnp~PRsYYRCt~~~gC~arKqVQr~~~D~~i~~tTY~G~HnH~~p~ 251 (448)
||.|++.++.++++|||+|||||||.|||++|||+||||++ .||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 2 r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp EEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred eEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 89999999999999999999999999999999999999998 699999999999999999999999999999875
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=7.7e-35 Score=238.07 Aligned_cols=75 Identities=55% Similarity=1.051 Sum_probs=68.9
Q ss_pred ceEEEEecCCCCCCCCcchhhcccccccCCCCCCcccccccccCCcccccceeeecCCCcEEEEEecccCCCCCCc
Q 013190 176 ARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP 251 (448)
Q Consensus 176 ~RV~v~t~se~~~~~DGy~WRKYGQK~IKGnp~PRsYYRCt~~~gC~arKqVQr~~~D~~i~~tTY~G~HnH~~p~ 251 (448)
-||+|+++++.++++|||+|||||||.|||++|||+|||||+ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 478999999999999999999999999999999999999998 799999999999999999999999999999874
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=77.37 E-value=0.99 Score=36.13 Aligned_cols=51 Identities=22% Similarity=0.380 Sum_probs=32.8
Q ss_pred CCCCcchhhcccccccCCCCCCccccccccc--CCcccccceeeecCCCcEEEEEecccCCCCCCc
Q 013190 188 MITDGCQWRKYGQKMAKGNPCPRAYYRCTMA--VGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP 251 (448)
Q Consensus 188 ~~~DGy~WRKYGQK~IKGnp~PRsYYRCt~~--~gC~arKqVQr~~~D~~i~~tTY~G~HnH~~p~ 251 (448)
++-|||..++--+ . ..+.|.+|+.. .+|.|+-.... + . +...+.|||+...
T Consensus 23 Lv~~Gy~Y~~~~~--~----~~~~yWrC~~~~~~kCrARi~T~~---~-~---~~~~~~HnH~p~~ 75 (87)
T 2rpr_A 23 LVHESFLYRKEKA--A----GEKVYWMCRDQARLGCRSRAITQG---H-R---IMVMRSHCHQPDL 75 (87)
T ss_dssp EEETTEEEEEEEE--C----SSCEEEEEGGGTTSCCCCEEEEET---T-E---EEECSCCSSCCCH
T ss_pred EEECCEEEEeeec--C----CCcEEEEecCCCCCCCCEEEEEcC---C-C---EECCCCcCCCCch
Confidence 5679998776321 1 23689999973 48999854432 2 1 2346889997443
No 4
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=29.92 E-value=12 Score=30.65 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=12.4
Q ss_pred CchhhHHHHHHHHHHH
Q 013190 1 MNTENQRLRDMLSQVT 16 (448)
Q Consensus 1 m~~ENqrLr~MLsqVt 16 (448)
|++||+.|++|++++.
T Consensus 53 LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 53 LRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678888888888773
No 5
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=25.98 E-value=37 Score=26.95 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=28.2
Q ss_pred CCcchhhcccccc--------cC--CCCCCcccccccccCCcccccceeeecCCCcEEEEEecccCCC
Q 013190 190 TDGCQWRKYGQKM--------AK--GNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 247 (448)
Q Consensus 190 ~DGy~WRKYGQK~--------IK--Gnp~PRsYYRCt~~~gC~arKqVQr~~~D~~i~~tTY~G~HnH 247 (448)
.+++.|.|-|... +. ...-||+||.|... +.+. ...+.|.|-|.-.+||
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~~------~~~~---~~~s~LqV~yR~C~NC 75 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGT------DIYK---DKESTVQVHYRMCQSC 75 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC-----------------CEEEEEEEECSCC-
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecCC------CCCC---cccEEEEEEhhhcCCc
Confidence 5779999988652 22 33449999999542 1111 0012577788877776
No 6
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=20.69 E-value=25 Score=23.05 Aligned_cols=8 Identities=50% Similarity=1.248 Sum_probs=6.6
Q ss_pred cccccccc
Q 013190 211 AYYRCTMA 218 (448)
Q Consensus 211 sYYRCt~~ 218 (448)
.||||+..
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 69999974
No 7
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=14.49 E-value=84 Score=23.54 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHH
Q 013190 3 TENQRLRDMLSQVTNNYNALQMH 25 (448)
Q Consensus 3 ~ENqrLr~MLsqVt~~YnaLQmh 25 (448)
.||..|+.-+..+..-...|...
T Consensus 36 ~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 36 SLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555444444444443
No 8
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=14.09 E-value=59 Score=27.79 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=35.2
Q ss_pred ceEEEEecCCCCCCCCcchhhcccccc----------------cCCCCC---CcccccccccCCcccccceeeecCCCcE
Q 013190 176 ARVSVRARSEAPMITDGCQWRKYGQKM----------------AKGNPC---PRAYYRCTMAVGCPVRKQVQRCAEDRTI 236 (448)
Q Consensus 176 ~RV~v~t~se~~~~~DGy~WRKYGQK~----------------IKGnp~---PRsYYRCt~~~gC~arKqVQr~~~D~~i 236 (448)
.+|.+....+ ..+...|.|-|+.. +.++-. ||.||+|... +=...+ -...
T Consensus 22 ~~V~LTCp~~---~~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C~~~-~~~~~~-------~~~~ 90 (105)
T 1xiw_A 22 TTVILTCPQY---PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR-GSKPED-------ANFY 90 (105)
T ss_dssp TEEEEECSSC---TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEET-TSCGGG-------CCEE
T ss_pred CEEEEECCCC---CCCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEEccC-CCCCCc-------ccEE
Confidence 5666665322 34558899988663 345533 9999999632 211110 0124
Q ss_pred EEEEecccCCC
Q 013190 237 LITTYEGNHNH 247 (448)
Q Consensus 237 ~~tTY~G~HnH 247 (448)
|.+-|.=..||
T Consensus 91 lyvk~RvCqNC 101 (105)
T 1xiw_A 91 LYLRARVCENC 101 (105)
T ss_dssp EEEEECCCTTC
T ss_pred EEEEEEecCCc
Confidence 66677766666
No 9
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=12.85 E-value=91 Score=24.24 Aligned_cols=14 Identities=50% Similarity=0.712 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHH
Q 013190 3 TENQRLRDMLSQVT 16 (448)
Q Consensus 3 ~ENqrLr~MLsqVt 16 (448)
+||.|||-++.|++
T Consensus 36 ~en~rlr~l~kqmc 49 (63)
T 2c9l_Y 36 SENDRLRLLLKQMC 49 (63)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHhC
Confidence 68999998887765
No 10
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=11.65 E-value=1.7e+02 Score=21.83 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q 013190 6 QRLRDMLSQVTNNYNALQMH 25 (448)
Q Consensus 6 qrLr~MLsqVt~~YnaLQmh 25 (448)
..||.=+..+..+|..|+..
T Consensus 22 eaLk~E~~eLk~k~~~L~~~ 41 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEE 41 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33443344444444444444
Done!