Query 013191
Match_columns 448
No_of_seqs 310 out of 1719
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 01:20:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1311 DHHC-type Zn-finger pr 100.0 5E-51 1.1E-55 408.3 20.9 271 24-311 1-277 (299)
2 KOG1315 Predicted DHHC-type Zn 100.0 1.7E-42 3.6E-47 344.4 17.2 234 62-315 27-267 (307)
3 PF01529 zf-DHHC: DHHC palmito 100.0 6.6E-39 1.4E-43 295.1 10.7 172 95-276 2-173 (174)
4 KOG1314 DHHC-type Zn-finger pr 100.0 1.1E-36 2.5E-41 299.9 12.6 227 40-302 14-265 (414)
5 KOG1313 DHHC-type Zn-finger pr 100.0 8E-34 1.7E-38 272.3 11.2 153 150-303 102-279 (309)
6 COG5273 Uncharacterized protei 100.0 2.1E-33 4.6E-38 281.9 14.7 164 92-276 68-232 (309)
7 KOG1312 DHHC-type Zn-finger pr 100.0 6.6E-31 1.4E-35 253.4 13.6 169 89-277 107-291 (341)
8 KOG0509 Ankyrin repeat and DHH 100.0 8.7E-29 1.9E-33 260.4 7.4 237 32-299 325-584 (600)
9 COG5273 Uncharacterized protei 93.4 0.25 5.5E-06 50.3 7.7 117 149-276 122-244 (309)
10 PF01529 zf-DHHC: DHHC palmito 90.7 0.81 1.8E-05 41.7 6.9 54 148-212 60-113 (174)
11 KOG0509 Ankyrin repeat and DHH 90.3 0.27 5.8E-06 53.7 3.8 63 148-211 323-385 (600)
12 KOG1311 DHHC-type Zn-finger pr 90.2 0.78 1.7E-05 46.1 7.0 41 164-204 113-164 (299)
13 PRK04136 rpl40e 50S ribosomal 64.2 4.1 8.8E-05 30.1 1.4 24 149-172 13-36 (48)
14 PRK15103 paraquat-inducible me 62.4 2E+02 0.0042 30.8 14.2 32 150-181 221-252 (419)
15 KOG1314 DHHC-type Zn-finger pr 59.2 91 0.002 32.6 10.4 89 85-202 56-146 (414)
16 KOG1398 Uncharacterized conser 54.2 19 0.0004 37.9 4.6 23 162-190 12-34 (460)
17 TIGR00155 pqiA_fam integral me 53.2 1.3E+02 0.0028 31.9 10.9 32 150-181 13-50 (403)
18 TIGR00155 pqiA_fam integral me 52.9 1.6E+02 0.0035 31.2 11.5 33 149-181 214-247 (403)
19 PF13240 zinc_ribbon_2: zinc-r 52.8 7.8 0.00017 24.1 1.0 21 152-172 1-21 (23)
20 PTZ00303 phosphatidylinositol 50.9 8.3 0.00018 43.7 1.6 22 151-172 461-489 (1374)
21 PHA02680 ORF090 IMV phosphoryl 50.5 72 0.0016 26.6 6.6 42 226-275 41-82 (91)
22 PF06906 DUF1272: Protein of u 45.2 12 0.00025 28.7 1.2 35 153-190 8-50 (57)
23 PF13248 zf-ribbon_3: zinc-rib 40.5 15 0.00032 23.4 0.9 22 151-172 3-24 (26)
24 PF01020 Ribosomal_L40e: Ribos 37.9 22 0.00048 26.7 1.7 24 150-173 17-42 (52)
25 PF12773 DZR: Double zinc ribb 34.1 24 0.00052 25.5 1.4 34 150-183 12-48 (50)
26 PF00641 zf-RanBP: Zn-finger i 34.1 17 0.00037 23.7 0.5 22 151-172 5-26 (30)
27 PF08600 Rsm1: Rsm1-like; Int 33.5 19 0.00041 30.0 0.8 12 177-188 54-65 (91)
28 PF10864 DUF2663: Protein of u 33.2 2.2E+02 0.0048 25.5 7.5 18 194-211 22-39 (130)
29 KOG1315 Predicted DHHC-type Zn 33.1 2.1E+02 0.0047 29.3 8.4 31 163-193 108-138 (307)
30 KOG1313 DHHC-type Zn-finger pr 32.4 1E+02 0.0023 31.1 5.8 135 150-300 116-279 (309)
31 KOG1842 FYVE finger-containing 31.7 13 0.00028 39.7 -0.6 26 149-174 179-206 (505)
32 PRK15103 paraquat-inducible me 30.8 3.3E+02 0.0071 29.1 9.7 29 152-180 12-46 (419)
33 COG1552 RPL40A Ribosomal prote 30.6 10 0.00022 28.2 -1.1 24 149-172 13-36 (50)
34 PF11014 DUF2852: Protein of u 27.3 98 0.0021 27.2 4.1 27 236-262 8-35 (115)
35 PF07649 C1_3: C1-like domain; 27.2 22 0.00048 23.2 0.1 22 151-172 1-23 (30)
36 TIGR02484 CitB CitB domain pro 27.0 2.2E+02 0.0048 30.0 7.4 15 165-183 48-62 (372)
37 KOG1277 Endosomal membrane pro 26.5 1.6E+02 0.0034 32.1 6.2 21 43-63 358-378 (593)
38 PF14127 DUF4294: Domain of un 26.4 55 0.0012 30.3 2.6 36 264-303 102-137 (157)
39 PHA02898 virion envelope prote 24.4 2.7E+02 0.0058 23.4 5.9 41 227-275 41-82 (92)
40 PF01363 FYVE: FYVE zinc finge 23.9 22 0.00048 27.4 -0.4 25 150-174 9-35 (69)
41 PF10571 UPF0547: Uncharacteri 23.5 47 0.001 21.3 1.1 22 151-172 1-22 (26)
42 KOG4694 Predicted membrane pro 23.5 47 0.001 30.5 1.6 78 19-107 67-144 (174)
43 PF01528 Herpes_glycop: Herpes 23.0 5E+02 0.011 27.4 9.2 41 255-295 164-212 (374)
44 cd00546 QFR_TypeD_subunitC Qui 22.1 3.4E+02 0.0073 24.2 6.6 21 228-248 54-74 (124)
45 KOG3183 Predicted Zn-finger pr 21.8 41 0.00088 33.1 0.9 14 172-185 36-49 (250)
46 PRK13603 fumarate reductase su 21.6 3.6E+02 0.0079 24.1 6.6 20 229-248 55-74 (126)
47 PRK04987 fumarate reductase su 20.8 3.7E+02 0.008 24.2 6.5 21 228-248 58-78 (130)
48 PRK15033 tricarballylate utili 20.1 2.7E+02 0.0058 29.6 6.5 14 166-183 68-81 (389)
49 PRK13743 conjugal transfer pro 20.1 5.2E+02 0.011 23.3 7.2 21 193-213 38-58 (141)
No 1
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=5e-51 Score=408.32 Aligned_cols=271 Identities=35% Similarity=0.640 Sum_probs=215.2
Q ss_pred eeeecCCcEEEecCeEEEccCcchhHHHHHHHhhhhheeeeehhhhccccCCcchhHHHHHHHHHHHHHHHHHHHHhhcC
Q 013191 24 YQAWKGSNVFFLGGRLIFGPDVRSLFLTIFLIVAPVAVFCVFVARKLMDNFPHHLGISIMVIVIALTLFALILLLLTSGR 103 (448)
Q Consensus 24 y~~~~g~n~f~c~GR~i~Gpd~~~l~~t~~Li~~p~~~f~vfv~~~l~~~~~~~~~~~ilii~~v~~ll~l~~ll~ts~~ 103 (448)
++.+.|++.+.++|+.+.++.....++++++++++.. ++++..+.+.. ......+.++.++|+++.++.++.++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~---~~~~~~~~~~~~if~~~~~~~~~~~~~~ 76 (299)
T KOG1311|consen 1 FADFLGNRIPRRGGRILDPPVALPVLVTYVLLVGSET-FFVFLPPLLPR---GGVSPAVLVLGAIFFLLNILNLMLACFR 76 (299)
T ss_pred CCcCccccccCCCceeeccccchhHHHHHHHHhhheE-EEEEEeeecCC---cccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999998888887765 55655555543 1223445556666777777777777666
Q ss_pred ---CCcccCCCCCCCCccCCCCCCCCCCCCCCCCCCCcceeEEcCeeeeeeeccCCCCccCCCCCCCCCCCccccccccc
Q 013191 104 ---DPGVIARNANPPELEGYEGTEVGPGQTPQLCLPRTKDVVVNGVVVKIKYCDTCMHYRPPRCSHCSICNNCVQKFDHH 180 (448)
Q Consensus 104 ---DPGiIPr~~~~~e~e~~~~~~~~~g~~p~~~~p~~k~v~vng~~~~~kyC~tC~i~RPpRs~HCs~C~~CV~rfDHH 180 (448)
|||++|++..+ ..+ . .+ +.++.+++.+||..++.+||.+|+.+||||||||++||+||+|||||
T Consensus 77 ~~sdpg~~p~~~~~----~~~---~----~~--~~~~~~~~~~~~~~~~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHH 143 (299)
T KOG1311|consen 77 MLSDPGIVPRADDE----QIE---D----PE--RAPLYKNVDVNGIQVEWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHH 143 (299)
T ss_pred ccCCCceecCcccC----CCC---C----cc--ccccCCCcccCCcccceEEcCcCcccCCCCcccchhhcccccccCCC
Confidence 99999997511 011 0 01 45677888999999999999999999999999999999999999999
Q ss_pred CceecccccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh--hhhhcCchhHHHHHHHHHHHHHHHHHHH
Q 013191 181 CPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIRKIMNGENVSIW--KAMTKSPASIALIIYTFISVWFVGGLTV 258 (448)
Q Consensus 181 CpWvgnCIG~rNyr~F~~FL~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~i~l~v~~~l~~~~v~~L~~ 258 (448)
|||+|||||+||||||++|++++++++++.++++++.+...........+ .........+++++++++++++++.|+.
T Consensus 144 C~WvnnCVG~rNyr~F~~f~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 223 (299)
T KOG1311|consen 144 CPWLNNCIGERNYRYFVLFLFYLALGVLLALAFLFYELLQRADNLKVNLTPVLIPAGTFLSALLGLLSALFLAFTSALLC 223 (299)
T ss_pred CCCccceECCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888876654443333322 2223334456677788999999999999
Q ss_pred HHHHHHhhCcchhhhhhh-ccCCCCCCCCHHHHHHHHHhcCCCCCCCccccccc
Q 013191 259 FHSYLISRNQSTYENFRN-RYDEHVNPYNKGVIKNFMEVFCTSIPTSKNNFRAK 311 (448)
Q Consensus 259 ~hl~li~~N~TT~E~~r~-r~~~~~npyd~G~~~N~~evfg~~~~ps~~~fr~~ 311 (448)
||++++.+|+||+|.++. +.+.+.++|++|.++|++++||.+.+++....+..
T Consensus 224 fh~~li~~~~Tt~e~~~~~~~~~~~~~~~~g~~~n~~~~~~~~~~~~~~~p~~~ 277 (299)
T KOG1311|consen 224 FHIYLIKSGSTTYESIKSLDFVSRSNPYDLGLLKNLQEVFGGPLPLSWLSPFAR 277 (299)
T ss_pred hheeeEecCcchhhhhhccccccccCCCchhHHHHHHHHhCCCCCccccccccc
Confidence 999999999999999984 44444599999999999999999988877666554
No 2
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=100.00 E-value=1.7e-42 Score=344.38 Aligned_cols=234 Identities=30% Similarity=0.542 Sum_probs=161.0
Q ss_pred eeeehhhhccccCCc-chhHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCccCCCCCCCCCCCCCCCCCCCcce
Q 013191 62 FCVFVARKLMDNFPH-HLGISIMVIVIALTLFALILLLLTSGRDPGVIARNANPPELEGYEGTEVGPGQTPQLCLPRTKD 140 (448)
Q Consensus 62 f~vfv~~~l~~~~~~-~~~~~ilii~~v~~ll~l~~ll~ts~~DPGiIPr~~~~~e~e~~~~~~~~~g~~p~~~~p~~k~ 140 (448)
++++++......... ...+..++++.++.++.+++++.+.++|||.+|..+.++.++. +..+- + ...++.+.
T Consensus 27 yy~~v~~~c~~~i~~~~~~~~~ll~~~~ll~m~~~sy~~~vf~~pg~vp~~~~~~~~~~-~~~~~--~----~~~~~~~~ 99 (307)
T KOG1315|consen 27 YYVYVAVLCILSISLTIPSVLLLLLFHLLLIMFLWSYFRTVFTDPGRVPDSYRPSVEDE-DSLEN--G----SDNERDLP 99 (307)
T ss_pred EEEeehhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHheeEecCCCCccccCCCcCcc-ccccc--c----Ccccccce
Confidence 344444443332221 2333444455556667788899999999999999887643221 11000 0 01112233
Q ss_pred eEEcCeeeeeeeccCCCCccCCCCCCCCCCCcccccccccCceecccccccchHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013191 141 VVVNGVVVKIKYCDTCMHYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIRK 220 (448)
Q Consensus 141 v~vng~~~~~kyC~tC~i~RPpRs~HCs~C~~CV~rfDHHCpWvgnCIG~rNyr~F~~FL~~~~l~~i~~~~~~~~~i~~ 220 (448)
+...+.....|||++|+.+|||||||||+|++||+||||||||+|||||.+|||||++|++|+.+.++++++.....+..
T Consensus 100 ~~~~~~~g~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~~~lv~~~~~~~~ 179 (307)
T KOG1315|consen 100 GYTRTSDGAVRYCDKCKCIKPDRAHHCSVCNRCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSIYVLVTTLIGFTK 179 (307)
T ss_pred eeEecCCCCceeecccccccCCccccchhhhhhhhccccCCcceeceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556899999999999999999999999999999999999999999999999999999999999887776555444
Q ss_pred hccCc--chhhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhc----cCCCCCCCCHHHHHHHH
Q 013191 221 IMNGE--NVSIWKAMTKSPASIALIIYTFISVWFVGGLTVFHSYLISRNQSTYENFRNR----YDEHVNPYNKGVIKNFM 294 (448)
Q Consensus 221 ~~~~~--~~~~~~~~~~~~~~i~l~v~~~l~~~~v~~L~~~hl~li~~N~TT~E~~r~r----~~~~~npyd~G~~~N~~ 294 (448)
..... ....+. ...+++++.++.+++.+++|++||+|||++|+||+|.++.. .....|.|+. ..|+.
T Consensus 180 ~~~~~~~~~~~~~-----~~~~~~~~~~~~f~i~l~~~l~~h~~Li~~N~TTiE~~~~~~~~~~~~~~~~~~~--~~n~~ 252 (307)
T KOG1315|consen 180 YFQGGAGPSSLLL-----FFIVFLFLVAIAFSISLSGLLCFHTYLILKNKTTIEAYKSPVFRSGLHNKNGFNL--YVNFR 252 (307)
T ss_pred HHhccccCchhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhccccccccccccCCcce--eecHH
Confidence 33110 001111 11233344455556667779999999999999999998764 1244566666 78999
Q ss_pred HhcCCCCCCCcccccccCCCC
Q 013191 295 EVFCTSIPTSKNNFRAKIPKE 315 (448)
Q Consensus 295 evfg~~~~ps~~~fr~~vp~~ 315 (448)
++||++ ...|.+|.+
T Consensus 253 ~vfg~~------~~~wl~P~~ 267 (307)
T KOG1315|consen 253 EVFGSN------LLYWLLPID 267 (307)
T ss_pred HHhCCC------ceEEecccc
Confidence 999975 466777774
No 3
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=100.00 E-value=6.6e-39 Score=295.13 Aligned_cols=172 Identities=35% Similarity=0.672 Sum_probs=124.4
Q ss_pred HHHHHhhcCCCcccCCCCCCCCccCCCCCCCCCCCCCCCCCCCcceeEEcCeeeeeeeccCCCCccCCCCCCCCCCCccc
Q 013191 95 ILLLLTSGRDPGVIARNANPPELEGYEGTEVGPGQTPQLCLPRTKDVVVNGVVVKIKYCDTCMHYRPPRCSHCSICNNCV 174 (448)
Q Consensus 95 ~~ll~ts~~DPGiIPr~~~~~e~e~~~~~~~~~g~~p~~~~p~~k~v~vng~~~~~kyC~tC~i~RPpRs~HCs~C~~CV 174 (448)
++|+++.++|||++|+.....+....+. + ......++....+...+.+||.+|+++||+|||||+.||+||
T Consensus 2 ~~~~~~~~~dPG~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV 72 (174)
T PF01529_consen 2 WSYFLTIFIDPGYVPRSNPDEDQRQEEK-E--------EEQNQSIDSPEDDENGELKYCSTCKIIKPPRSHHCRVCNRCV 72 (174)
T ss_pred EEehhhheECCcccCCcccccccccccc-c--------cccchhhhhhccccCCCCEECcccCCcCCCcceecccccccc
Confidence 4578889999999999722111110000 0 000111222234455688999999999999999999999999
Q ss_pred ccccccCceecccccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhhcCchhHHHHHHHHHHHHHHH
Q 013191 175 QKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIRKIMNGENVSIWKAMTKSPASIALIIYTFISVWFVG 254 (448)
Q Consensus 175 ~rfDHHCpWvgnCIG~rNyr~F~~FL~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~l~v~~~l~~~~v~ 254 (448)
+||||||+|+|||||++|||+|++|+++.++.+++.++.++..+...........+... .....+++++++++.+++++
T Consensus 73 ~~~DHHC~w~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 151 (174)
T PF01529_consen 73 LRFDHHCPWLGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLYYLVRYIPSISFSSFWIF-SNFSSIFLLIISIFFFIFVG 151 (174)
T ss_pred ccccccchhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-hhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887766655443322211111111 11112566677788888899
Q ss_pred HHHHHHHHHHhhCcchhhhhhh
Q 013191 255 GLTVFHSYLISRNQSTYENFRN 276 (448)
Q Consensus 255 ~L~~~hl~li~~N~TT~E~~r~ 276 (448)
.|+++|+++|++|+||+|.+|+
T Consensus 152 ~l~~~~~~~i~~n~Tt~E~~~~ 173 (174)
T PF01529_consen 152 FLLIFQLYLILRNITTYERIKR 173 (174)
T ss_pred HHHHHHHHHHHcCCcHHHHHHc
Confidence 9999999999999999999875
No 4
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=299.87 Aligned_cols=227 Identities=24% Similarity=0.466 Sum_probs=149.8
Q ss_pred EEccCcchhHHHHHHHhhhhheeeeehhhhccccCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCccC
Q 013191 40 IFGPDVRSLFLTIFLIVAPVAVFCVFVARKLMDNFPHHLGISIMVIVIALTLFALILLLLTSGRDPGVIARNANPPELEG 119 (448)
Q Consensus 40 i~Gpd~~~l~~t~~Li~~p~~~f~vfv~~~l~~~~~~~~~~~ilii~~v~~ll~l~~ll~ts~~DPGiIPr~~~~~e~e~ 119 (448)
-+||. +.++++.++...+.+.- ..+++. .+...+..-.+.+.+.+.+.++.|+.++++.||++|++++|+.+.+
T Consensus 14 hwGpi---~alsiit~i~~~~~~~n--~lww~p-~ss~~g~~n~i~f~~~~~m~~~ny~~A~~~gPG~vp~~wkPe~~~D 87 (414)
T KOG1314|consen 14 HWGPI---TALSIITIITSTTGYMN--SLWWFP-LSSFLGVPNQITFLLWTSMILYNYFNAIFTGPGFVPLGWKPENPKD 87 (414)
T ss_pred ccccH---HHHHHHHHHHHHHHHhh--hhhhcc-ccchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChh
Confidence 35554 45555655554444331 111111 1122333333445556677888999999999999999999854432
Q ss_pred CCCCCCCCCCCCCCCCCCcceeEEcCeeeeeeeccCCCCccCCCCCCCCCCCcccccccccCceecccccccchHHHHHH
Q 013191 120 YEGTEVGPGQTPQLCLPRTKDVVVNGVVVKIKYCDTCMHYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMF 199 (448)
Q Consensus 120 ~~~~~~~~g~~p~~~~p~~k~v~vng~~~~~kyC~tC~i~RPpRs~HCs~C~~CV~rfDHHCpWvgnCIG~rNyr~F~~F 199 (448)
....+||..|+-||+||||||+.|||||.+|||||||+|||||..||.||+.|
T Consensus 88 ---------------------------~~~lqfCk~CqgYKapRSHHCrkCnrCvmkMDHHCPWinnCVG~aNh~~F~~F 140 (414)
T KOG1314|consen 88 ---------------------------EMFLQFCKKCQGYKAPRSHHCRKCNRCVMKMDHHCPWINNCVGWANHAYFLRF 140 (414)
T ss_pred ---------------------------HHHHHHHhhccCcCCCccccchHHHHHHHhhccCCcchhhcccccccHHHHHH
Confidence 12468999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--HHHh--hhhhhc----cCcchhhhhhhhcCchhHHHHHHHH----HHHHHHHHHHHHHHHHHhhC
Q 013191 200 VFSTTLLCIYVHA--FCWI--RIRKIM----NGENVSIWKAMTKSPASIALIIYTF----ISVWFVGGLTVFHSYLISRN 267 (448)
Q Consensus 200 L~~~~l~~i~~~~--~~~~--~i~~~~----~~~~~~~~~~~~~~~~~i~l~v~~~----l~~~~v~~L~~~hl~li~~N 267 (448)
|++..+.|+...+ .|.. .+...+ ...... ...-++.+++.+++++ ..++.++.|+..|+..|.+|
T Consensus 141 Llf~ivG~ih~tiI~~~~~~~~Iy~~W~~~~g~~hlp---~v~ft~~~li~~vfslgla~gv~la~t~Lf~~qlk~Il~n 217 (414)
T KOG1314|consen 141 LLFSIVGCIHGTIILVCAQYRGIYFRWYIKYGLRHLP---IVFFTLSSLIALVFSLGLAIGVVLALTMLFFIQLKQILNN 217 (414)
T ss_pred HHHHHHhcccceeeehhHHHHHHHHHHHhhcccccCc---eeeccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999998875321 1111 111111 000000 0111223333333332 23345667888999999999
Q ss_pred cchhhhhh-----hc---c-----CCCCCCCCHHHHHHHHHhcCCCCC
Q 013191 268 QSTYENFR-----NR---Y-----DEHVNPYNKGVIKNFMEVFCTSIP 302 (448)
Q Consensus 268 ~TT~E~~r-----~r---~-----~~~~npyd~G~~~N~~evfg~~~~ 302 (448)
+|.+|.+- .| + +.-.-|||.|+..|+++||...-.
T Consensus 218 rt~IE~wi~~Ka~~rr~~~~~d~~~~f~ypydlgWr~n~r~vf~~~~~ 265 (414)
T KOG1314|consen 218 RTGIESWIVEKAMDRREYYFNDDEGEFTYPYDLGWRINLREVFFQNKK 265 (414)
T ss_pred CcchHHHHHHHHHHHHHhhccCCCCceeeeccccccccHHHHhhhccc
Confidence 99999883 11 1 122469999977799999987643
No 5
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=8e-34 Score=272.30 Aligned_cols=153 Identities=33% Similarity=0.638 Sum_probs=117.0
Q ss_pred eeeccCCCCccCCCCCCCCCCCcccccccccCceecccccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc------
Q 013191 150 IKYCDTCMHYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIRKIMN------ 223 (448)
Q Consensus 150 ~kyC~tC~i~RPpRs~HCs~C~~CV~rfDHHCpWvgnCIG~rNyr~F~~FL~~~~l~~i~~~~~~~~~i~~~~~------ 223 (448)
..+|.+|+-+||||+||||+||+||++|||||||+|||||..||||||+|++|+++.+.|..+++...+.....
T Consensus 102 ~SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHryFFlFl~~ltlat~~~~i~~~~~w~~~le~~~~~t 181 (309)
T KOG1313|consen 102 DSFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRYFFLFLFYLTLATSYAAIMCVYTWIDHLEPIEEIT 181 (309)
T ss_pred ccHHhhcCCCCCCCcchhhHHhhHhhccccCCchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhcc
Confidence 46899999999999999999999999999999999999999999999999999999999988775433322211
Q ss_pred ---Ccchhhh---------hhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhc-----c--CCCCCC
Q 013191 224 ---GENVSIW---------KAMTKSPASIALIIYTFISVWFVGGLTVFHSYLISRNQSTYENFRNR-----Y--DEHVNP 284 (448)
Q Consensus 224 ---~~~~~~~---------~~~~~~~~~i~l~v~~~l~~~~v~~L~~~hl~li~~N~TT~E~~r~r-----~--~~~~np 284 (448)
++....| ..+..+- ...+.+.++..++.++.|..+|.++|++|.|.+|..... + ..+.||
T Consensus 182 ay~~d~~h~~Pp~~i~r~~~~i~~t~-~~~~~fls~~~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k~~~a~~R~~~ 260 (309)
T KOG1313|consen 182 AYASDVAHVAPPPSILRVYKNITRTS-IANLWFLSVRVLVAVGLLTAWHAVLISRGETSIEQLINIKERKRYLAHLRSNP 260 (309)
T ss_pred cccCcccccCCChhhhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHhheeeehhhhhHHHHHHHHHhHhHHHhccCCC
Confidence 0000011 1111111 112444555667788999999999999999999987432 1 345799
Q ss_pred CCHHHHHHHHHhcCCCCCC
Q 013191 285 YNKGVIKNFMEVFCTSIPT 303 (448)
Q Consensus 285 yd~G~~~N~~evfg~~~~p 303 (448)
++.|..+||+.++|-...|
T Consensus 261 ~n~g~k~nWr~fLg~~~~r 279 (309)
T KOG1313|consen 261 TNFGGKANWRNFLGLFRGR 279 (309)
T ss_pred cccchHHHHHHhhccccCC
Confidence 9999999999999977655
No 6
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=100.00 E-value=2.1e-33 Score=281.87 Aligned_cols=164 Identities=33% Similarity=0.600 Sum_probs=120.1
Q ss_pred HHHHHHHHhhcCCCcccCCCCCCCCccCCCCCCCCCCCCCCCCCCCcceeEEcCeeeeeeeccCCCCccCCCCCCCCCCC
Q 013191 92 FALILLLLTSGRDPGVIARNANPPELEGYEGTEVGPGQTPQLCLPRTKDVVVNGVVVKIKYCDTCMHYRPPRCSHCSICN 171 (448)
Q Consensus 92 l~l~~ll~ts~~DPGiIPr~~~~~e~e~~~~~~~~~g~~p~~~~p~~k~v~vng~~~~~kyC~tC~i~RPpRs~HCs~C~ 171 (448)
+...+++.....|||+.+++......++.. +.....|.....+||.+|+.+||+|||||+.||
T Consensus 68 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~C~~C~~~KP~RS~HC~~Cn 130 (309)
T COG5273 68 LASFSYLLLLVSDPGYLGENITLSGYRETI-----------------SRLLDDGKFGTENFCSTCNIYKPPRSHHCSICN 130 (309)
T ss_pred hHHHhhHHHhhcCCCccCccccccchhhhh-----------------hhhhhcCccccceeccccccccCCCCccchhhc
Confidence 456678888999999998765432221110 111123445678999999999999999999999
Q ss_pred cccccccccCceecccccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCc-chhhhhhhhcCchhHHHHHHHHHHH
Q 013191 172 NCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIRKIMNGE-NVSIWKAMTKSPASIALIIYTFISV 250 (448)
Q Consensus 172 ~CV~rfDHHCpWvgnCIG~rNyr~F~~FL~~~~l~~i~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~i~l~v~~~l~~ 250 (448)
+||+||||||||+|||||.+|||+|++||+++.+.++++++.++.++....+.. ..+.+... .......++...+
T Consensus 131 ~CV~k~DHHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----li~~~~~~~~~~f 206 (309)
T COG5273 131 RCVLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSLAICF----LIFGCSLLGVVFF 206 (309)
T ss_pred chhhccCccCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHH----HHHhhhHHHHHHH
Confidence 999999999999999999999999999999999988888887777665554322 22222110 0001123334445
Q ss_pred HHHHHHHHHHHHHHhhCcchhhhhhh
Q 013191 251 WFVGGLTVFHSYLISRNQSTYENFRN 276 (448)
Q Consensus 251 ~~v~~L~~~hl~li~~N~TT~E~~r~ 276 (448)
+++..++++|.+++..|+||+|.+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~t~~e~~~~ 232 (309)
T COG5273 207 IITTLLLLFLIYLILNNLTTIEFIQI 232 (309)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 66778999999999999999998864
No 7
>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=99.97 E-value=6.6e-31 Score=253.37 Aligned_cols=169 Identities=33% Similarity=0.665 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHhhcCCCcccCCCCCCCCccCCCCCCCCCCCCCCCCCCCcceeEEcCeeeeeeeccCCCCccCCCCCCCC
Q 013191 89 LTLFALILLLLTSGRDPGVIARNANPPELEGYEGTEVGPGQTPQLCLPRTKDVVVNGVVVKIKYCDTCMHYRPPRCSHCS 168 (448)
Q Consensus 89 ~~ll~l~~ll~ts~~DPGiIPr~~~~~e~e~~~~~~~~~g~~p~~~~p~~k~v~vng~~~~~kyC~tC~i~RPpRs~HCs 168 (448)
..++.++++.+|+.+|||++.+.......+.+ | .++++ ..+.+.|+||++.||.||+|||
T Consensus 107 ~vivp~i~f~ltc~snpg~i~k~n~s~~~~~y---------------p-YDy~i----f~k~~kCSTCki~KPARSKHCs 166 (341)
T KOG1312|consen 107 LVIVPLIFFTLTCGSNPGIITKANESLFLHVY---------------P-YDYVI----FPKNVKCSTCKIRKPARSKHCS 166 (341)
T ss_pred HHHHHHHHHhhhhcCCCCccchhhhccceecc---------------C-cccee----ecCCCccccccCCCccccccch
Confidence 33457788899999999999764422111111 1 12221 1244789999999999999999
Q ss_pred CCCcccccccccCceecccccccchHHHHHHHHHHHHHHHHHHHHHHhh-hhhhccCcc----hhhhhhhhcCchhH-HH
Q 013191 169 ICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIR-IRKIMNGEN----VSIWKAMTKSPASI-AL 242 (448)
Q Consensus 169 ~C~~CV~rfDHHCpWvgnCIG~rNyr~F~~FL~~~~l~~i~~~~~~~~~-i~~~~~~~~----~~~~~~~~~~~~~i-~l 242 (448)
+||+||+||||||.|+|||||++|+|||++||++...++.|.++-.+.. +....+-.+ ...|....+....+ -.
T Consensus 167 iCNrCV~rfDHHCiWiNNCIG~~N~ryF~lFLL~~i~l~~yaivrlgfi~ln~~sdl~q~v~ilt~~~g~~ks~~~L~~y 246 (341)
T KOG1312|consen 167 ICNRCVHRFDHHCIWINNCIGAWNIRYFLLFLLTLISLATYAIVRLGFIVLNVMSDLYQEVYILTLGHGHVKSTVFLIQY 246 (341)
T ss_pred HHHHHHHHhccceEeeecccccchHHHHHHHHHHHHHHHHHHHHHHHheehhhccccchheeeeeeeecchhhHHHHHHH
Confidence 9999999999999999999999999999999999988888866544333 111111000 11121111111111 11
Q ss_pred HHHH---------HHH-HHHHHHHHHHHHHHHhhCcchhhhhhhc
Q 013191 243 IIYT---------FIS-VWFVGGLTVFHSYLISRNQSTYENFRNR 277 (448)
Q Consensus 243 ~v~~---------~l~-~~~v~~L~~~hl~li~~N~TT~E~~r~r 277 (448)
++.+ +.. ..++++...|-+|+-++|+||.|+.+.+
T Consensus 247 l~la~~~~v~~l~~~~~~~~~~~Y~~f~~y~~~t~~~~~~W~~~d 291 (341)
T KOG1312|consen 247 LFLAFPRIVFMLGFVVVLSFLGGYLLFVLYLAATNQTTNEWYRGD 291 (341)
T ss_pred HHHHhccceeeeehhhhhhHhHHHHHHHHHHHhccCCchhhhccc
Confidence 1111 111 2346778888899999999999998764
No 8
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.95 E-value=8.7e-29 Score=260.45 Aligned_cols=237 Identities=25% Similarity=0.491 Sum_probs=145.9
Q ss_pred EEEecCeEEEccCcchhHHHHHHHhhhhheeeeehhhhccccCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCC
Q 013191 32 VFFLGGRLIFGPDVRSLFLTIFLIVAPVAVFCVFVARKLMDNFPHHLGISIMVIVIALTLFALILLLLTSGRDPGVIARN 111 (448)
Q Consensus 32 ~f~c~GR~i~Gpd~~~l~~t~~Li~~p~~~f~vfv~~~l~~~~~~~~~~~ilii~~v~~ll~l~~ll~ts~~DPGiIPr~ 111 (448)
.+.|-.|.+++.-..+++++.++...-..+++.+.. .+... .........+++.+..++.+.++..+|||++|..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fw~~~~w~~-~i~~~----~~~~~~~~~i~~~l~~~~~f~~~~rsDPg~i~~~ 399 (600)
T KOG0509|consen 325 TCLCATRKIVGFLLRPPLLSGFFLSTLFWFYYFWFS-KITPY----TLFDFHYCFIISVLAYFITFGLFLRSDPGFIPTS 399 (600)
T ss_pred heeccchhhccccccchhHHHHHHHHHHHHHHhhhe-eccch----hhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Confidence 445677888888888877766665554444443333 11111 0111111122222333444555556999999864
Q ss_pred CCCCCccCCCCCCCCCCCCCCCCCCCcceeEEcCeeeee-eeccCCCCccCCCCCCCCCCCcccccccccCceecccccc
Q 013191 112 ANPPELEGYEGTEVGPGQTPQLCLPRTKDVVVNGVVVKI-KYCDTCMHYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGL 190 (448)
Q Consensus 112 ~~~~e~e~~~~~~~~~g~~p~~~~p~~k~v~vng~~~~~-kyC~tC~i~RPpRs~HCs~C~~CV~rfDHHCpWvgnCIG~ 190 (448)
.... .+. +++..--|..... +||.+|.+.||.|++||++|||||.||||||||++||||.
T Consensus 400 ~~~~-~~t------------------Is~l~d~gkf~~en~FC~~clirKp~rSkhc~vcnrcVarfDHhCPwi~ncVG~ 460 (600)
T KOG0509|consen 400 TEVG-RET------------------ISQLIDFGKFDLENRFCLTCLIRKPLRSKHCSVCNRCVARFDHHCPWIGNCVGL 460 (600)
T ss_pred hhhH-HHH------------------HHHhhccccccccccceeeeeeecCCccchhhhhHHHHhccccCCCccccccCc
Confidence 3221 010 1111111223344 6999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhhcCchhHHHHHHHH--------------HHHHHHHHH
Q 013191 191 RNYRFFFMFVFSTTLLCIYVHAFCWIRIRKIMNGENVSIWKAMTKSPASIALIIYTF--------------ISVWFVGGL 256 (448)
Q Consensus 191 rNyr~F~~FL~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~l~v~~~--------------l~~~~v~~L 256 (448)
+|||+|+.|+++....+.++++.+..++....... .+|.... +.+..+.. ...+-.+..
T Consensus 461 kNh~~F~~Fl~~l~~~~~~~l~~~~~y~~~~~~~~--~~~~~~l-----~~~~~~~~~~~~~~~~~~n~~~~~t~~~~~~ 533 (600)
T KOG0509|consen 461 KNHRLFVFFLLTLLTVIVFYLYLCLYYIMNLENAS--TIYVGFL-----IAVQAFRIPKPVTGNLLGNEDLNPTWGSTST 533 (600)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH--HHHHHHH-----HHHHHHhCCccceeeeeeccccccccccccc
Confidence 99999999999999988888887777664432211 2222111 00000000 001111222
Q ss_pred HHHHHHHHhhCcchhhhhhhcc--------CCCCCCCCHHHHHHHHHhcCC
Q 013191 257 TVFHSYLISRNQSTYENFRNRY--------DEHVNPYNKGVIKNFMEVFCT 299 (448)
Q Consensus 257 ~~~hl~li~~N~TT~E~~r~r~--------~~~~npyd~G~~~N~~evfg~ 299 (448)
.+-|-..++.+.||+|.++.+. ...++|++.|..+|+.++|-.
T Consensus 534 ~~~~~~~~c~~~tt~e~~n~~r~~~~~~~~~~~~~~~s~g~~~Nl~df~~~ 584 (600)
T KOG0509|consen 534 KCQHYNCACLHLTTNEQINVKRYEHLGIKRGPTRSPFSPGPIRNLVDFFLC 584 (600)
T ss_pred cccccceeeecccHHHHHHHHHhhccccccCcCCCCCCchhhhcchheeec
Confidence 2334455889999999985422 234689999999999998853
No 9
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=93.44 E-value=0.25 Score=50.29 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=64.8
Q ss_pred eeeeccCCCCccCCCCCCCCCCCcccccccccCceecccccccchHHHHHHHHHHHHHHHHHHHHHHhhhh-hhccCcch
Q 013191 149 KIKYCDTCMHYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIR-KIMNGENV 227 (448)
Q Consensus 149 ~~kyC~tC~i~RPpRs~HCs~C~~CV~rfDHHCpWvgnCIG~rNyr~F~~FL~~~~l~~i~~~~~~~~~i~-~~~~~~~~ 227 (448)
+.++|.+|+.=-.-.-|||.-=||||-+--| |=+=.|++++.+.++..++....-+..+. .-.+....
T Consensus 122 RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~-----------r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (309)
T COG5273 122 RSHHCSICNRCVLKFDHHCPWINNCVGFRNY-----------RFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSLA 190 (309)
T ss_pred CCccchhhcchhhccCccCcccccccCcchH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHH
Confidence 5678999999999999999999999987544 44567887775555443332222111111 00111111
Q ss_pred ---hhhh--hhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhh
Q 013191 228 ---SIWK--AMTKSPASIALIIYTFISVWFVGGLTVFHSYLISRNQSTYENFRN 276 (448)
Q Consensus 228 ---~~~~--~~~~~~~~i~l~v~~~l~~~~v~~L~~~hl~li~~N~TT~E~~r~ 276 (448)
-++. .+......+...++.+.....+..+..+..+.+.++.++-|....
T Consensus 191 ~~~li~~~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~ 244 (309)
T COG5273 191 ICFLIFGCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFPL 244 (309)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecccccch
Confidence 1111 111001111122222233334456777788889999998886643
No 10
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=90.68 E-value=0.81 Score=41.73 Aligned_cols=54 Identities=19% Similarity=0.445 Sum_probs=41.0
Q ss_pred eeeeeccCCCCccCCCCCCCCCCCcccccccccCceecccccccchHHHHHHHHHHHHHHHHHHH
Q 013191 148 VKIKYCDTCMHYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHA 212 (448)
Q Consensus 148 ~~~kyC~tC~i~RPpRs~HCs~C~~CV~rfDHHCpWvgnCIG~rNyr~F~~FL~~~~l~~i~~~~ 212 (448)
.+.++|..|+.-...+-|||..-++||-+--| +-+=.|+++.....+..++...
T Consensus 60 ~Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~-----------~~F~~fl~~~~~~~~~~~~~~~ 113 (174)
T PF01529_consen 60 PRSHHCRVCNRCVLRFDHHCPWLGNCIGRRNH-----------RYFLLFLLYLCLYCLYFFILSL 113 (174)
T ss_pred CcceeccccccccccccccchhhccccccccH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999998765 3455677766655555554333
No 11
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=90.28 E-value=0.27 Score=53.72 Aligned_cols=63 Identities=13% Similarity=-0.091 Sum_probs=50.1
Q ss_pred eeeeeccCCCCccCCCCCCCCCCCcccccccccCceecccccccchHHHHHHHHHHHHHHHHHH
Q 013191 148 VKIKYCDTCMHYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVH 211 (448)
Q Consensus 148 ~~~kyC~tC~i~RPpRs~HCs~C~~CV~rfDHHCpWvgnCIG~rNyr~F~~FL~~~~l~~i~~~ 211 (448)
+-..+|.+|.+..+.+..+|..|-.|+..|++||+|+. ||+.+|-..|..+.+...+..++.+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fw~~~~w~~-~i~~~~~~~~~~~~i~~~l~~~~~f 385 (600)
T KOG0509|consen 323 VLTCLCATRKIVGFLLRPPLLSGFFLSTLFWFYYFWFS-KITPYTLFDFHYCFIISVLAYFITF 385 (600)
T ss_pred hhheeccchhhccccccchhHHHHHHHHHHHHHHhhhe-eccchhhhhhHHHHHHHHHHHHHHH
Confidence 44678999999999999999999999999999999999 9999998765444433333333333
No 12
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=90.24 E-value=0.78 Score=46.12 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=35.4
Q ss_pred CCCCCCCCcccccccccCceecccccccch-----------HHHHHHHHHHH
Q 013191 164 CSHCSICNNCVQKFDHHCPWVGQCIGLRNY-----------RFFFMFVFSTT 204 (448)
Q Consensus 164 s~HCs~C~~CV~rfDHHCpWvgnCIG~rNy-----------r~F~~FL~~~~ 204 (448)
-++|..|+..+.+.-|||+.=++||-+.-| |-+-.|+.++.
T Consensus 113 ~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~ 164 (299)
T KOG1311|consen 113 WKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLF 164 (299)
T ss_pred eEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHH
Confidence 799999999999999999999999988855 55668885555
No 13
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=64.18 E-value=4.1 Score=30.11 Aligned_cols=24 Identities=29% Similarity=0.641 Sum_probs=21.6
Q ss_pred eeeeccCCCCccCCCCCCCCCCCc
Q 013191 149 KIKYCDTCMHYRPPRCSHCSICNN 172 (448)
Q Consensus 149 ~~kyC~tC~i~RPpRs~HCs~C~~ 172 (448)
..+.|..|...-|+|+..|+.|+.
T Consensus 13 ~k~ICrkC~ARnp~~A~~CRKCg~ 36 (48)
T PRK04136 13 NKKICMRCNARNPWRATKCRKCGY 36 (48)
T ss_pred cccchhcccCCCCccccccccCCC
Confidence 457899999999999999998876
No 14
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=62.40 E-value=2e+02 Score=30.77 Aligned_cols=32 Identities=16% Similarity=0.392 Sum_probs=24.3
Q ss_pred eeeccCCCCccCCCCCCCCCCCcccccccccC
Q 013191 150 IKYCDTCMHYRPPRCSHCSICNNCVQKFDHHC 181 (448)
Q Consensus 150 ~kyC~tC~i~RPpRs~HCs~C~~CV~rfDHHC 181 (448)
..-|..|...-|....||..|+.-..+..++.
T Consensus 221 l~~C~~Cd~l~~~~~a~CpRC~~~L~~~~~~s 252 (419)
T PRK15103 221 LRSCSCCTAILPADQPVCPRCHTKGYVRRRNS 252 (419)
T ss_pred CCcCCCCCCCCCCCCCCCCCCCCcCcCCCCCC
Confidence 45699999887777778888888776655553
No 15
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=59.19 E-value=91 Score=32.57 Aligned_cols=89 Identities=19% Similarity=0.292 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHh--hcCCCcccCCCCCCCCccCCCCCCCCCCCCCCCCCCCcceeEEcCeeeeeeeccCCCCccCC
Q 013191 85 IVIALTLFALILLLLT--SGRDPGVIARNANPPELEGYEGTEVGPGQTPQLCLPRTKDVVVNGVVVKIKYCDTCMHYRPP 162 (448)
Q Consensus 85 i~~v~~ll~l~~ll~t--s~~DPGiIPr~~~~~e~e~~~~~~~~~g~~p~~~~p~~k~v~vng~~~~~kyC~tC~i~RPp 162 (448)
+...++++.++.-+.+ -+.-||.=|.+.....-..+=.. =..+..|| ...|.+|+.=.-.
T Consensus 56 ~~~~m~~~ny~~A~~~gPG~vp~~wkPe~~~D~~~lqfCk~------CqgYKapR------------SHHCrkCnrCvmk 117 (414)
T KOG1314|consen 56 LWTSMILYNYFNAIFTGPGFVPLGWKPENPKDEMFLQFCKK------CQGYKAPR------------SHHCRKCNRCVMK 117 (414)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHhh------ccCcCCCc------------cccchHHHHHHHh
Confidence 3334444455544444 56778998876644211111000 00112233 4568888755555
Q ss_pred CCCCCCCCCcccccccccCceecccccccchHHHHHHHHH
Q 013191 163 RCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFS 202 (448)
Q Consensus 163 Rs~HCs~C~~CV~rfDHHCpWvgnCIG~rNyr~F~~FL~~ 202 (448)
=-|||.--|+||---.|- -.-+|++|...
T Consensus 118 MDHHCPWinnCVG~aNh~-----------~F~~FLlf~iv 146 (414)
T KOG1314|consen 118 MDHHCPWINNCVGWANHA-----------YFLRFLLFSIV 146 (414)
T ss_pred hccCCcchhhcccccccH-----------HHHHHHHHHHH
Confidence 579999999999654442 24678888765
No 16
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.23 E-value=19 Score=37.90 Aligned_cols=23 Identities=43% Similarity=0.951 Sum_probs=17.3
Q ss_pred CCCCCCCCCCcccccccccCceecccccc
Q 013191 162 PRCSHCSICNNCVQKFDHHCPWVGQCIGL 190 (448)
Q Consensus 162 pRs~HCs~C~~CV~rfDHHCpWvgnCIG~ 190 (448)
.|..||-.|+ .+|| +|+.||||.
T Consensus 12 ~~p~l~~tC~----e~~h--~w~~~c~ga 34 (460)
T KOG1398|consen 12 ARPSLAETCD----EADH--SWVANCIGA 34 (460)
T ss_pred cCchHhhhhh----hccC--CcccchhHH
Confidence 4567777776 3677 589999997
No 17
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=53.23 E-value=1.3e+02 Score=31.93 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=19.2
Q ss_pred eeeccCCCCcc--C----CCCCCCCCCCcccccccccC
Q 013191 150 IKYCDTCMHYR--P----PRCSHCSICNNCVQKFDHHC 181 (448)
Q Consensus 150 ~kyC~tC~i~R--P----pRs~HCs~C~~CV~rfDHHC 181 (448)
..-|..|..-- | ...-||..|+.-..+.+++.
T Consensus 13 ~~~C~~Cd~l~~~~~l~~g~~a~CpRCg~~L~~~~~~~ 50 (403)
T TIGR00155 13 HILCSQCDMLVALPRIESGQKAACPRCGTTLTVGWDWS 50 (403)
T ss_pred eeeCCCCCCcccccCCCCCCeeECCCCCCCCcCCCCCC
Confidence 34588886322 2 23345888888777665553
No 18
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=52.88 E-value=1.6e+02 Score=31.22 Aligned_cols=33 Identities=18% Similarity=0.478 Sum_probs=22.6
Q ss_pred eeeeccCCCC-ccCCCCCCCCCCCcccccccccC
Q 013191 149 KIKYCDTCMH-YRPPRCSHCSICNNCVQKFDHHC 181 (448)
Q Consensus 149 ~~kyC~tC~i-~RPpRs~HCs~C~~CV~rfDHHC 181 (448)
...-|..|.. ..|....||..|+.-..+..++.
T Consensus 214 ~~~~C~~Cd~~~~~~~~a~CpRC~~~L~~~~~~s 247 (403)
T TIGR00155 214 KLRSCSACHTTILPAQEPVCPRCSTPLYVRRRNS 247 (403)
T ss_pred CCCcCCCCCCccCCCCCcCCcCCCCcccCCCCCC
Confidence 3456999987 45555677888887776655553
No 19
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=52.77 E-value=7.8 Score=24.14 Aligned_cols=21 Identities=24% Similarity=0.662 Sum_probs=17.3
Q ss_pred eccCCCCccCCCCCCCCCCCc
Q 013191 152 YCDTCMHYRPPRCSHCSICNN 172 (448)
Q Consensus 152 yC~tC~i~RPpRs~HCs~C~~ 172 (448)
||..|...-++.+..|+.|+.
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CCcccCCCCCCcCcchhhhCC
Confidence 688888888888888888874
No 20
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=50.89 E-value=8.3 Score=43.70 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=18.1
Q ss_pred eeccCCCCccC-------CCCCCCCCCCc
Q 013191 151 KYCDTCMHYRP-------PRCSHCSICNN 172 (448)
Q Consensus 151 kyC~tC~i~RP-------pRs~HCs~C~~ 172 (448)
+.|..|+..-. -|-||||.|++
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGr 489 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGI 489 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCcc
Confidence 57999987774 39999999876
No 21
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=50.49 E-value=72 Score=26.62 Aligned_cols=42 Identities=24% Similarity=0.489 Sum_probs=24.6
Q ss_pred chhhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhh
Q 013191 226 NVSIWKAMTKSPASIALIIYTFISVWFVGGLTVFHSYLISRNQSTYENFR 275 (448)
Q Consensus 226 ~~~~~~~~~~~~~~i~l~v~~~l~~~~v~~L~~~hl~li~~N~TT~E~~r 275 (448)
....|+++. ++.++.+.+ .+.++++|..|--++..+++|.++
T Consensus 41 ~~~~wRalS-----ii~FIlG~v---l~lGilifs~y~~C~~~~~~~r~n 82 (91)
T PHA02680 41 TDYVWRALS-----VTCFIVGAV---LLLGLFVFSMYRKCSGSMPYERLN 82 (91)
T ss_pred cchhHHHHH-----HHHHHHHHH---HHHHHHHHHHhcccCCCceeeccc
Confidence 356787643 333333333 244577888887777777776543
No 22
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=45.20 E-value=12 Score=28.68 Aligned_cols=35 Identities=31% Similarity=0.972 Sum_probs=26.9
Q ss_pred ccCCCCccCCCC-------CCCCCCCcccccc-cccCceecccccc
Q 013191 153 CDTCMHYRPPRC-------SHCSICNNCVQKF-DHHCPWVGQCIGL 190 (448)
Q Consensus 153 C~tC~i~RPpRs-------~HCs~C~~CV~rf-DHHCpWvgnCIG~ 190 (448)
|..|..--|+-+ +-|..|..|++.+ +++|| ||=|.
T Consensus 8 CE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~~CP---NCgGe 50 (57)
T PF06906_consen 8 CECCDKDLPPDSPEAYICSFECTFCADCAETMLNGVCP---NCGGE 50 (57)
T ss_pred ccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcCcCc---CCCCc
Confidence 666666666644 5688999999998 99998 77664
No 23
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=40.55 E-value=15 Score=23.40 Aligned_cols=22 Identities=23% Similarity=0.680 Sum_probs=17.5
Q ss_pred eeccCCCCccCCCCCCCCCCCc
Q 013191 151 KYCDTCMHYRPPRCSHCSICNN 172 (448)
Q Consensus 151 kyC~tC~i~RPpRs~HCs~C~~ 172 (448)
++|..|...-++-++.|..|+.
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGA 24 (26)
T ss_pred CCCcccCCcCCcccccChhhCC
Confidence 5788888877888888888874
No 24
>PF01020 Ribosomal_L40e: Ribosomal L40e family; InterPro: IPR001975 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the L40 ribosomal protein from both archaea and eukaryotes. Bovine ribosomal protein L40 has been identified as a secondary RNA binding protein []. L40 is fused to a ubiquitin protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZS_p 3IZR_p 2AYJ_A 4A1B_K 4A19_K 4A18_K 4A1D_K.
Probab=37.94 E-value=22 Score=26.75 Aligned_cols=24 Identities=29% Similarity=0.820 Sum_probs=16.4
Q ss_pred eeeccCCCCccCCCCCCCCC--CCcc
Q 013191 150 IKYCDTCMHYRPPRCSHCSI--CNNC 173 (448)
Q Consensus 150 ~kyC~tC~i~RPpRs~HCs~--C~~C 173 (448)
.+.|..|...-||||..|+. |+++
T Consensus 17 k~ICrkCyarl~~~A~nCRKkkCGhs 42 (52)
T PF01020_consen 17 KMICRKCYARLPPRATNCRKKKCGHS 42 (52)
T ss_dssp -EEETTT--EE-TTSSS-TSSSCTS-
T ss_pred ceecccccCcCCCCccceecccCCCC
Confidence 46799999999999999998 8765
No 25
>PF12773 DZR: Double zinc ribbon
Probab=34.14 E-value=24 Score=25.48 Aligned_cols=34 Identities=24% Similarity=0.491 Sum_probs=22.6
Q ss_pred eeeccCCCCccC---CCCCCCCCCCcccccccccCce
Q 013191 150 IKYCDTCMHYRP---PRCSHCSICNNCVQKFDHHCPW 183 (448)
Q Consensus 150 ~kyC~tC~i~RP---pRs~HCs~C~~CV~rfDHHCpW 183 (448)
.+||..|...-+ .....|..|+.=+...+.+|+.
T Consensus 12 ~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~~fC~~ 48 (50)
T PF12773_consen 12 AKFCPHCGTPLPPPDQSKKICPNCGAENPPNAKFCPN 48 (50)
T ss_pred ccCChhhcCChhhccCCCCCCcCCcCCCcCCcCccCc
Confidence 567777766665 2356677777777666666653
No 26
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=34.07 E-value=17 Score=23.68 Aligned_cols=22 Identities=27% Similarity=0.715 Sum_probs=16.6
Q ss_pred eeccCCCCccCCCCCCCCCCCc
Q 013191 151 KYCDTCMHYRPPRCSHCSICNN 172 (448)
Q Consensus 151 kyC~tC~i~RPpRs~HCs~C~~ 172 (448)
-.|.+|...-+++..+|..|+.
T Consensus 5 W~C~~C~~~N~~~~~~C~~C~~ 26 (30)
T PF00641_consen 5 WKCPSCTFMNPASRSKCVACGA 26 (30)
T ss_dssp EEETTTTEEEESSSSB-TTT--
T ss_pred ccCCCCcCCchHHhhhhhCcCC
Confidence 4589999999999999998873
No 27
>PF08600 Rsm1: Rsm1-like; InterPro: IPR013909 This entry contains Nuclear-interacting partner of ALK (NIPA) and NIPA like proteins, as well as mRNA export factor Rsm1, all of which contain a C3HC-type zinc finger. The domain represented in this entry is found C-terminal to the zinc-finger like domain IPR012935 from INTERPRO. Rsm1 is involved in mRNA export from the nucleus []. NIPA is an essential component of an SCF-type E3 ligase complex, SCF(NIPA), a complex that controls mitotic entry by mediating ubiquitination and subsequent degradation of cyclin B1 (CCNB1). Its cell-cycle-dependent phosphorylation regulates the assembly of the SCF(NIPA) complex, restricting CCNB1 ubiquitination activity to interphase. Its inactivation results in nuclear accumulation of CCNB1 in interphase and premature mitotic entry [].
Probab=33.55 E-value=19 Score=30.02 Aligned_cols=12 Identities=33% Similarity=0.949 Sum_probs=8.7
Q ss_pred ccccCceecccc
Q 013191 177 FDHHCPWVGQCI 188 (448)
Q Consensus 177 fDHHCpWvgnCI 188 (448)
+-.||||++.-.
T Consensus 54 Hr~~CPwv~~~~ 65 (91)
T PF08600_consen 54 HREYCPWVNPST 65 (91)
T ss_pred ccccCCccCCcc
Confidence 335799998754
No 28
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=33.16 E-value=2.2e+02 Score=25.55 Aligned_cols=18 Identities=33% Similarity=0.622 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013191 194 RFFFMFVFSTTLLCIYVH 211 (448)
Q Consensus 194 r~F~~FL~~~~l~~i~~~ 211 (448)
+++.+++++++++++|+.
T Consensus 22 ~~~~~~l~~~~~~~~y~~ 39 (130)
T PF10864_consen 22 FWQWLFLFSLFLFFIYFY 39 (130)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666666666644
No 29
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=33.09 E-value=2.1e+02 Score=29.27 Aligned_cols=31 Identities=19% Similarity=0.442 Sum_probs=27.6
Q ss_pred CCCCCCCCCcccccccccCceecccccccch
Q 013191 163 RCSHCSICNNCVQKFDHHCPWVGQCIGLRNY 193 (448)
Q Consensus 163 Rs~HCs~C~~CV~rfDHHCpWvgnCIG~rNy 193 (448)
+.+.|..|+.-....-|||.--+.||.+.-|
T Consensus 108 ~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDH 138 (307)
T KOG1315|consen 108 AVRYCDKCKCIKPDRAHHCSVCNRCVLKMDH 138 (307)
T ss_pred CceeecccccccCCccccchhhhhhhhcccc
Confidence 6678999999999999999999999998755
No 30
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=32.42 E-value=1e+02 Score=31.08 Aligned_cols=135 Identities=20% Similarity=0.342 Sum_probs=72.8
Q ss_pred eeeccCCCCccCCCCCCCCCCCcccccccccCceecccccccchHHHHHHHHHHHHHHHHHHHHHHhhhh----------
Q 013191 150 IKYCDTCMHYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIR---------- 219 (448)
Q Consensus 150 ~kyC~tC~i~RPpRs~HCs~C~~CV~rfDHHCpWvgnCIG~rNyr~F~~FL~~~~l~~i~~~~~~~~~i~---------- 219 (448)
...|++|+.=.-.=-|||.-=|+||--..|- =.-.|+.++.-++.++.+.....|....
T Consensus 116 THHCsiC~kCVL~MDHHCPwinnCVG~~NHr-----------yFFlFl~~ltlat~~~~i~~~~~w~~~le~~~~~tay~ 184 (309)
T KOG1313|consen 116 THHCSICNKCVLKMDHHCPWINNCVGAHNHR-----------YFFLFLFYLTLATSYAAIMCVYTWIDHLEPIEEITAYA 184 (309)
T ss_pred cchhhHHhhHhhccccCCchhhcccccccch-----------hHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhccccc
Confidence 3457777665555689999999999887763 4567888887666666555443332111
Q ss_pred ----h------hc-cCcc---hhhhhhhhcCchhHHHHHHHHHHHH-----HHHHHHHHHHHHHhhCcchhhhhhhccCC
Q 013191 220 ----K------IM-NGEN---VSIWKAMTKSPASIALIIYTFISVW-----FVGGLTVFHSYLISRNQSTYENFRNRYDE 280 (448)
Q Consensus 220 ----~------~~-~~~~---~~~~~~~~~~~~~i~l~v~~~l~~~-----~v~~L~~~hl~li~~N~TT~E~~r~r~~~ 280 (448)
+ +. .... .++-..+. ....++++...+.+| .+|...+-++.++...+++.-..| ..
T Consensus 185 ~d~~h~~Pp~~i~r~~~~i~~t~~~~~~f--ls~~~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k~~~a~~R---~~ 259 (309)
T KOG1313|consen 185 SDVAHVAPPPSILRVYKNITRTSIANLWF--LSVRVLVAVGLLTAWHAVLISRGETSIEQLINIKERKRYLAHLR---SN 259 (309)
T ss_pred CcccccCCChhhhhhhhhhhHHHHHHHHH--HHHHHHHHHHHHHHHhheeeehhhhhHHHHHHHHHhHhHHHhcc---CC
Confidence 0 00 0011 11111111 011222222222222 234455555666666666655444 23
Q ss_pred CCCCCCHHHHHHHHHhcCCC
Q 013191 281 HVNPYNKGVIKNFMEVFCTS 300 (448)
Q Consensus 281 ~~npyd~G~~~N~~evfg~~ 300 (448)
..|-=-+-=|+|+..++..+
T Consensus 260 ~~n~g~k~nWr~fLg~~~~r 279 (309)
T KOG1313|consen 260 PTNFGGKANWRNFLGLFRGR 279 (309)
T ss_pred CcccchHHHHHHhhccccCC
Confidence 44544556689999999888
No 31
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=31.65 E-value=13 Score=39.66 Aligned_cols=26 Identities=23% Similarity=0.805 Sum_probs=20.0
Q ss_pred eeeeccCCCCcc--CCCCCCCCCCCccc
Q 013191 149 KIKYCDTCMHYR--PPRCSHCSICNNCV 174 (448)
Q Consensus 149 ~~kyC~tC~i~R--PpRs~HCs~C~~CV 174 (448)
.+++|..|...= --|-|||+.|++-+
T Consensus 179 ~V~~CP~Ca~~F~l~rRrHHCRLCG~Vm 206 (505)
T KOG1842|consen 179 SVQFCPECANSFGLTRRRHHCRLCGRVM 206 (505)
T ss_pred cccccccccchhhhHHHhhhhhhcchHH
Confidence 468999996543 34899999999854
No 32
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=30.77 E-value=3.3e+02 Score=29.08 Aligned_cols=29 Identities=17% Similarity=0.402 Sum_probs=17.8
Q ss_pred eccCCCCcc--C----CCCCCCCCCCccccccccc
Q 013191 152 YCDTCMHYR--P----PRCSHCSICNNCVQKFDHH 180 (448)
Q Consensus 152 yC~tC~i~R--P----pRs~HCs~C~~CV~rfDHH 180 (448)
-|..|..-- | ...-||..|+.-..+.+++
T Consensus 12 ~C~~Cd~l~~~~~l~~g~~a~CpRCg~~L~~~~~~ 46 (419)
T PRK15103 12 LCPQCDMLVALPRLEHGQKAACPRCGTTLTVRWDE 46 (419)
T ss_pred cCCCCCceeecCCCCCCCeeECCCCCCCCcCCCCC
Confidence 499997531 2 2345688887776655444
No 33
>COG1552 RPL40A Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]
Probab=30.64 E-value=10 Score=28.21 Aligned_cols=24 Identities=33% Similarity=0.880 Sum_probs=21.1
Q ss_pred eeeeccCCCCccCCCCCCCCCCCc
Q 013191 149 KIKYCDTCMHYRPPRCSHCSICNN 172 (448)
Q Consensus 149 ~~kyC~tC~i~RPpRs~HCs~C~~ 172 (448)
..+.|..|...-|+|+-.|+.|+.
T Consensus 13 ~kkIC~rC~Arnp~~A~kCRkC~~ 36 (50)
T COG1552 13 NKKICRRCYARNPPRATKCRKCGY 36 (50)
T ss_pred hHHHHHHhcCCCCcchhHHhhccC
Confidence 357899999999999999998864
No 34
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=27.30 E-value=98 Score=27.19 Aligned_cols=27 Identities=30% Similarity=0.552 Sum_probs=19.0
Q ss_pred CchhHHHHHHHHHHHHHHHHH-HHHHHH
Q 013191 236 SPASIALIIYTFISVWFVGGL-TVFHSY 262 (448)
Q Consensus 236 ~~~~i~l~v~~~l~~~~v~~L-~~~hl~ 262 (448)
.++.|+++|++|+++|.+|.. ++|-++
T Consensus 8 ~~a~Ia~mVlGFi~fWPlGla~Lay~iw 35 (115)
T PF11014_consen 8 KPAWIAAMVLGFIVFWPLGLALLAYMIW 35 (115)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999988743 333333
No 35
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=27.19 E-value=22 Score=23.16 Aligned_cols=22 Identities=27% Similarity=0.461 Sum_probs=8.8
Q ss_pred eeccCCCCccCC-CCCCCCCCCc
Q 013191 151 KYCDTCMHYRPP-RCSHCSICNN 172 (448)
Q Consensus 151 kyC~tC~i~RPp-Rs~HCs~C~~ 172 (448)
+.|..|+..... ..++|..|+-
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf 23 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDF 23 (30)
T ss_dssp ---TTTS----S--EEE-TTT--
T ss_pred CcCCcCCCcCCCCceEECccCCC
Confidence 357788777766 7788888863
No 36
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=27.03 E-value=2.2e+02 Score=29.98 Aligned_cols=15 Identities=33% Similarity=1.035 Sum_probs=12.5
Q ss_pred CCCCCCCcccccccccCce
Q 013191 165 SHCSICNNCVQKFDHHCPW 183 (448)
Q Consensus 165 ~HCs~C~~CV~rfDHHCpW 183 (448)
..|..|++| +|+||.
T Consensus 48 ~lChnC~~C----~~~CPy 62 (372)
T TIGR02484 48 HLCHDCQSC----WHDCQY 62 (372)
T ss_pred HHCcCcccc----cccCcC
Confidence 678888999 579998
No 37
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.49 E-value=1.6e+02 Score=32.06 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=13.0
Q ss_pred cCcchhHHHHHHHhhhhheee
Q 013191 43 PDVRSLFLTIFLIVAPVAVFC 63 (448)
Q Consensus 43 pd~~~l~~t~~Li~~p~~~f~ 63 (448)
++.+.++++.+|+-+|+...+
T Consensus 358 ~Wik~m~lta~Lfp~~~~~t~ 378 (593)
T KOG1277|consen 358 RWIKNMLLTASLFPVPVFGTA 378 (593)
T ss_pred HHHHHHHHHhhhhhHHHHHHH
Confidence 345667777777766655433
No 38
>PF14127 DUF4294: Domain of unknown function (DUF4294)
Probab=26.36 E-value=55 Score=30.29 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=30.5
Q ss_pred HhhCcchhhhhhhccCCCCCCCCHHHHHHHHHhcCCCCCC
Q 013191 264 ISRNQSTYENFRNRYDEHVNPYNKGVIKNFMEVFCTSIPT 303 (448)
Q Consensus 264 i~~N~TT~E~~r~r~~~~~npyd~G~~~N~~evfg~~~~p 303 (448)
=-+|+|++|-+|. ..+++.-++|+.+..+||.+...
T Consensus 102 Retg~TsyelIK~----~rgg~~A~~~q~~A~~Fg~sLK~ 137 (157)
T PF14127_consen 102 RETGSTSYELIKE----LRGGWRAFWYQTFAWLFGISLKK 137 (157)
T ss_pred HhcCCcHHHHHHH----hhCChhHHHHHHHHHHhCccccc
Confidence 3589999999884 56899999999999999987543
No 39
>PHA02898 virion envelope protein; Provisional
Probab=24.42 E-value=2.7e+02 Score=23.41 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=24.0
Q ss_pred hhhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHH-HhhCcchhhhhh
Q 013191 227 VSIWKAMTKSPASIALIIYTFISVWFVGGLTVFHSYL-ISRNQSTYENFR 275 (448)
Q Consensus 227 ~~~~~~~~~~~~~i~l~v~~~l~~~~v~~L~~~hl~l-i~~N~TT~E~~r 275 (448)
...|.++. ++.++.+.+ .+.++++|..|- -+++.++.|.-|
T Consensus 41 ~~~wRalS-----ii~FIlgiv---l~lG~~ifs~y~r~C~~~~~~e~~r 82 (92)
T PHA02898 41 DSALRSIS-----IISFILAII---LILGIIFFKGYNMFCGGNTTDEVSR 82 (92)
T ss_pred hhHHHHHH-----HHHHHHHHH---HHHHHHHHHHHhhhcCCCcccccce
Confidence 56787543 333333332 345677888877 566777777544
No 40
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=23.89 E-value=22 Score=27.41 Aligned_cols=25 Identities=28% Similarity=0.491 Sum_probs=11.6
Q ss_pred eeeccCCCCcc--CCCCCCCCCCCccc
Q 013191 150 IKYCDTCMHYR--PPRCSHCSICNNCV 174 (448)
Q Consensus 150 ~kyC~tC~i~R--PpRs~HCs~C~~CV 174 (448)
.+.|..|...= --|-|||+.|++.|
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~v 35 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVV 35 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEE
Confidence 45677775422 35899999999854
No 41
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=23.54 E-value=47 Score=21.33 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=17.1
Q ss_pred eeccCCCCccCCCCCCCCCCCc
Q 013191 151 KYCDTCMHYRPPRCSHCSICNN 172 (448)
Q Consensus 151 kyC~tC~i~RPpRs~HCs~C~~ 172 (448)
|.|..|...-|.-+.-|..|+.
T Consensus 1 K~CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 1 KTCPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred CcCCCCcCCchhhcCcCCCCCC
Confidence 4588888888888888887763
No 42
>KOG4694 consensus Predicted membrane protein [Function unknown]
Probab=23.48 E-value=47 Score=30.52 Aligned_cols=78 Identities=22% Similarity=0.253 Sum_probs=43.1
Q ss_pred CcccceeeecCCcEEEecCeEEEccCcchhHHHHHHHhhhhheeeeehhhhccccCCcchhHHHHHHHHHHHHHHHHHHH
Q 013191 19 GLVRTYQAWKGSNVFFLGGRLIFGPDVRSLFLTIFLIVAPVAVFCVFVARKLMDNFPHHLGISIMVIVIALTLFALILLL 98 (448)
Q Consensus 19 ~~~r~y~~~~g~n~f~c~GR~i~Gpd~~~l~~t~~Li~~p~~~f~vfv~~~l~~~~~~~~~~~ilii~~v~~ll~l~~ll 98 (448)
+..|.|-.|.||= |.|- +....++.+..+|.+|..+|..+-.... .. ..-+++-+++.+|.+..++..+
T Consensus 67 E~vRLylGy~gNL---~e~~----~al~gfl~~t~~iqlPl~vFL~~n~~~~--nL--pLe~~~~~vftlf~~e~iv~~~ 135 (174)
T KOG4694|consen 67 ESVRLYLGYSGNL---CEGA----TALWGFLTVTPCIQLPLMVFLRLNAAGR--NL--PLEIITNAVFTLFVLEVIVSLV 135 (174)
T ss_pred HHHHhhcchhhhH---hhch----HHHHHHHHHHHHHHHHHHHHHHHccccc--cC--cHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888772 2221 3334555666777788887765443221 11 1233444444455555566666
Q ss_pred HhhcCCCcc
Q 013191 99 LTSGRDPGV 107 (448)
Q Consensus 99 ~ts~~DPGi 107 (448)
.+...-||-
T Consensus 136 ~~~~~k~~~ 144 (174)
T KOG4694|consen 136 HFVICKPGC 144 (174)
T ss_pred HHHHHhhhh
Confidence 666666764
No 43
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=22.99 E-value=5e+02 Score=27.42 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhCcchhhhhhhccCCCC-CCCC-------HHHHHHHHH
Q 013191 255 GLTVFHSYLISRNQSTYENFRNRYDEHV-NPYN-------KGVIKNFME 295 (448)
Q Consensus 255 ~L~~~hl~li~~N~TT~E~~r~r~~~~~-npyd-------~G~~~N~~e 295 (448)
.++.|-.+++.+|+++.++-+....-++ +|-= |.+.-|+.+
T Consensus 164 ~~~~f~~~~~tr~~s~~~~~~~~~~l~~~~p~L~~~v~~~r~V~vNl~~ 212 (374)
T PF01528_consen 164 CSTVFTVSFITRGSSSWTYARSEFQLPKIHPKLHRVVGPFRAVVVNLVL 212 (374)
T ss_pred HHHHHHHHHHhCCCcHhHHHHHHhhhhhcChHHHHHHhccHHHHHHHHH
Confidence 4556667888999997665544332222 5533 444556554
No 44
>cd00546 QFR_TypeD_subunitC Quinol:fumarate reductase (QFR) Type D subfamily, 15kD hydrophobic subunit C; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type D as they contain two transmembrane subunits (C and D) and no heme groups. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The quinone binding site resides in the transmembrane subunits.
Probab=22.13 E-value=3.4e+02 Score=24.19 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=12.0
Q ss_pred hhhhhhhcCchhHHHHHHHHH
Q 013191 228 SIWKAMTKSPASIALIIYTFI 248 (448)
Q Consensus 228 ~~~~~~~~~~~~i~l~v~~~l 248 (448)
.-|..++++|..+++-+.+++
T Consensus 54 ~~f~~flqnPiv~~lniiaL~ 74 (124)
T cd00546 54 AGFVSFLQNPIVVLLNIIALA 74 (124)
T ss_pred HHHHHHHhCcHHHHHHHHHHH
Confidence 345566778866655554443
No 45
>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]
Probab=21.76 E-value=41 Score=33.13 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=10.5
Q ss_pred cccccccccCceec
Q 013191 172 NCVQKFDHHCPWVG 185 (448)
Q Consensus 172 ~CV~rfDHHCpWvg 185 (448)
.=..+.+|||||+.
T Consensus 36 eHrsye~H~Cp~~~ 49 (250)
T KOG3183|consen 36 EHRSYESHHCPKGL 49 (250)
T ss_pred ccchHhhcCCCccc
Confidence 34566799999974
No 46
>PRK13603 fumarate reductase subunit C; Provisional
Probab=21.64 E-value=3.6e+02 Score=24.05 Aligned_cols=20 Identities=10% Similarity=0.273 Sum_probs=11.5
Q ss_pred hhhhhhcCchhHHHHHHHHH
Q 013191 229 IWKAMTKSPASIALIIYTFI 248 (448)
Q Consensus 229 ~~~~~~~~~~~i~l~v~~~l 248 (448)
-|..++++|..+++-+.+++
T Consensus 55 ~f~~flqnPivv~lniiaL~ 74 (126)
T PRK13603 55 RFLDFSANPVVVVLNVVALS 74 (126)
T ss_pred HHHHHHhCcHHHHHHHHHHH
Confidence 44556777765555544443
No 47
>PRK04987 fumarate reductase subunit C; Provisional
Probab=20.79 E-value=3.7e+02 Score=24.17 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=11.9
Q ss_pred hhhhhhhcCchhHHHHHHHHH
Q 013191 228 SIWKAMTKSPASIALIIYTFI 248 (448)
Q Consensus 228 ~~~~~~~~~~~~i~l~v~~~l 248 (448)
.-|..++++|..+++-+.+++
T Consensus 58 ~~f~~flqnPiv~~lniiaL~ 78 (130)
T PRK04987 58 AGFVSFLQNPIVVILNIITLA 78 (130)
T ss_pred HHHHHHHhCcHHHHHHHHHHH
Confidence 345566778765555544443
No 48
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=20.13 E-value=2.7e+02 Score=29.55 Aligned_cols=14 Identities=36% Similarity=1.239 Sum_probs=11.7
Q ss_pred CCCCCCcccccccccCce
Q 013191 166 HCSICNNCVQKFDHHCPW 183 (448)
Q Consensus 166 HCs~C~~CV~rfDHHCpW 183 (448)
.|..|+.|. |+||-
T Consensus 68 ~C~~Cg~C~----~~CP~ 81 (389)
T PRK15033 68 LCHNCGACL----HACQY 81 (389)
T ss_pred hCcCccccc----ccCcC
Confidence 799999995 58997
No 49
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=20.11 E-value=5.2e+02 Score=23.27 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 013191 193 YRFFFMFVFSTTLLCIYVHAF 213 (448)
Q Consensus 193 yr~F~~FL~~~~l~~i~~~~~ 213 (448)
-+||-+|+++.+...+...++
T Consensus 38 ~~Y~~LfiVFl~AG~vLw~vM 58 (141)
T PRK13743 38 DIYFDLFIVFLTAGIVLWVIM 58 (141)
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 478889988887766654444
Done!