Query 013191
Match_columns 448
No_of_seqs 310 out of 1719
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 05:54:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 58.8 5 0.00017 29.6 2.1 28 149-176 18-45 (56)
2 2dkt_A Ring finger and CHY zin 45.9 5.2 0.00018 35.1 0.5 46 144-189 77-126 (143)
3 3j21_g 50S ribosomal protein L 40.4 15 0.00053 26.4 2.2 28 149-176 13-40 (51)
4 1joc_A EEA1, early endosomal a 34.9 13 0.00046 31.4 1.4 23 151-173 70-94 (125)
5 1wfk_A Zinc finger, FYVE domai 33.5 13 0.00044 29.6 1.0 24 150-173 9-34 (88)
6 1dvp_A HRS, hepatocyte growth 31.8 17 0.00056 33.6 1.6 24 151-174 162-187 (220)
7 1vfy_A Phosphatidylinositol-3- 29.0 15 0.00051 28.0 0.6 23 152-174 13-37 (73)
8 1x4u_A Zinc finger, FYVE domai 26.9 17 0.00059 28.4 0.6 23 151-173 15-39 (84)
9 2yw8_A RUN and FYVE domain-con 25.6 18 0.00063 28.1 0.6 25 150-174 19-45 (82)
10 3zyq_A Hepatocyte growth facto 25.4 23 0.0008 32.9 1.4 23 151-173 165-189 (226)
11 1z2q_A LM5-1; membrane protein 25.2 19 0.00065 28.2 0.6 24 150-173 21-46 (84)
12 3u5e_m 60S ribosomal protein L 22.0 42 0.0014 28.0 2.2 26 149-174 92-119 (128)
13 2knc_B Integrin beta-3; transm 21.4 1.4E+02 0.0049 23.1 5.0 35 240-274 13-47 (79)
14 3gj3_B Nuclear pore complex pr 21.3 45 0.0015 21.7 1.7 22 151-172 8-29 (33)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=58.82 E-value=5 Score=29.59 Aligned_cols=28 Identities=25% Similarity=0.594 Sum_probs=23.9
Q ss_pred eeeeccCCCCccCCCCCCCCCCCccccc
Q 013191 149 KIKYCDTCMHYRPPRCSHCSICNNCVQK 176 (448)
Q Consensus 149 ~~kyC~tC~i~RPpRs~HCs~C~~CV~r 176 (448)
..+.|..|...-|+||..|+.|+..-+|
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred chhhhccccCcCCcccccccCCCCCCCC
Confidence 4578999999999999999999866544
No 2
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=45.91 E-value=5.2 Score=35.11 Aligned_cols=46 Identities=24% Similarity=0.580 Sum_probs=32.5
Q ss_pred cCeeeeeeeccCCCCccCCC-CCCCCCCCcccccc--c-ccCceeccccc
Q 013191 144 NGVVVKIKYCDTCMHYRPPR-CSHCSICNNCVQKF--D-HHCPWVGQCIG 189 (448)
Q Consensus 144 ng~~~~~kyC~tC~i~RPpR-s~HCs~C~~CV~rf--D-HHCpWvgnCIG 189 (448)
.|..+...||..|++|-+.+ .+||..|+-|-..- | -||.=-|.|+.
T Consensus 77 Cg~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 77 CSTLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp SCCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred CCccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 45667788999999997654 67888888887762 2 26665566643
No 3
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.42 E-value=15 Score=26.44 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=23.9
Q ss_pred eeeeccCCCCccCCCCCCCCCCCccccc
Q 013191 149 KIKYCDTCMHYRPPRCSHCSICNNCVQK 176 (448)
Q Consensus 149 ~~kyC~tC~i~RPpRs~HCs~C~~CV~r 176 (448)
..+.|..|...-|+++..|+.|+.--+|
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred CCccCCCCCCcCCCCceecCCCCCcccc
Confidence 4578999999999999999999876544
No 4
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.88 E-value=13 Score=31.45 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=16.6
Q ss_pred eeccCCCCc--cCCCCCCCCCCCcc
Q 013191 151 KYCDTCMHY--RPPRCSHCSICNNC 173 (448)
Q Consensus 151 kyC~tC~i~--RPpRs~HCs~C~~C 173 (448)
..|..|... --.|-|||+.|++-
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~v 94 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNI 94 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCCcCcCCccccccccccCCCCCeE
Confidence 468888653 23588999999874
No 5
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=33.54 E-value=13 Score=29.62 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=17.2
Q ss_pred eeeccCCCCc--cCCCCCCCCCCCcc
Q 013191 150 IKYCDTCMHY--RPPRCSHCSICNNC 173 (448)
Q Consensus 150 ~kyC~tC~i~--RPpRs~HCs~C~~C 173 (448)
...|..|... --.|-|||+.|++-
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCE
Confidence 4568888653 23588999999874
No 6
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.75 E-value=17 Score=33.60 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=17.4
Q ss_pred eeccCCCCc--cCCCCCCCCCCCccc
Q 013191 151 KYCDTCMHY--RPPRCSHCSICNNCV 174 (448)
Q Consensus 151 kyC~tC~i~--RPpRs~HCs~C~~CV 174 (448)
+.|..|... ---|-|||+.|++.+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 578888643 234889999998743
No 7
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=28.96 E-value=15 Score=28.02 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=16.4
Q ss_pred eccCCCCc--cCCCCCCCCCCCccc
Q 013191 152 YCDTCMHY--RPPRCSHCSICNNCV 174 (448)
Q Consensus 152 yC~tC~i~--RPpRs~HCs~C~~CV 174 (448)
-|..|... .-.|-|||+.|++-+
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cccCCCCccCCccccccCCCCCEEE
Confidence 58888653 234889999998743
No 8
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.92 E-value=17 Score=28.42 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=16.5
Q ss_pred eeccCCCCc--cCCCCCCCCCCCcc
Q 013191 151 KYCDTCMHY--RPPRCSHCSICNNC 173 (448)
Q Consensus 151 kyC~tC~i~--RPpRs~HCs~C~~C 173 (448)
..|..|... --.|-|||+.|++-
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CcCcCcCCccccchhhhhhcCCCcE
Confidence 457777652 23588999999874
No 9
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=25.62 E-value=18 Score=28.13 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=17.3
Q ss_pred eeeccCCCCc--cCCCCCCCCCCCccc
Q 013191 150 IKYCDTCMHY--RPPRCSHCSICNNCV 174 (448)
Q Consensus 150 ~kyC~tC~i~--RPpRs~HCs~C~~CV 174 (448)
...|..|... --.|-|||+.|++-+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEE
Confidence 3568888652 234889999998743
No 10
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.36 E-value=23 Score=32.86 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=16.2
Q ss_pred eeccCCCCc--cCCCCCCCCCCCcc
Q 013191 151 KYCDTCMHY--RPPRCSHCSICNNC 173 (448)
Q Consensus 151 kyC~tC~i~--RPpRs~HCs~C~~C 173 (448)
..|..|... ---|-|||+.|++.
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v 189 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQI 189 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred CCCcCcCCCCCccccccccCCCcCE
Confidence 468888641 12378999999874
No 11
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=25.19 E-value=19 Score=28.19 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=17.1
Q ss_pred eeeccCCCCc--cCCCCCCCCCCCcc
Q 013191 150 IKYCDTCMHY--RPPRCSHCSICNNC 173 (448)
Q Consensus 150 ~kyC~tC~i~--RPpRs~HCs~C~~C 173 (448)
...|..|... --.|-|||+.|++-
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v 46 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYV 46 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcE
Confidence 4568888653 23488999999874
No 12
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=21.97 E-value=42 Score=28.01 Aligned_cols=26 Identities=27% Similarity=0.742 Sum_probs=22.1
Q ss_pred eeeeccCCCCccCCCCCCCCC--CCccc
Q 013191 149 KIKYCDTCMHYRPPRCSHCSI--CNNCV 174 (448)
Q Consensus 149 ~~kyC~tC~i~RPpRs~HCs~--C~~CV 174 (448)
..+.|..|...-|+|+..|+. |+..-
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~~ 119 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHTN 119 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSCC
T ss_pred ceEeeccccccCCchhhccchhhCCCcc
Confidence 358899999999999999994 87643
No 13
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.36 E-value=1.4e+02 Score=23.08 Aligned_cols=35 Identities=11% Similarity=0.274 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhh
Q 013191 240 IALIIYTFISVWFVGGLTVFHSYLISRNQSTYENF 274 (448)
Q Consensus 240 i~l~v~~~l~~~~v~~L~~~hl~li~~N~TT~E~~ 274 (448)
+++.+.+.+.++.+..|+++-+.......--++.+
T Consensus 13 Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kF 47 (79)
T 2knc_B 13 VLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKF 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444445556555555444444444
No 14
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=21.34 E-value=45 Score=21.73 Aligned_cols=22 Identities=32% Similarity=0.809 Sum_probs=18.2
Q ss_pred eeccCCCCccCCCCCCCCCCCc
Q 013191 151 KYCDTCMHYRPPRCSHCSICNN 172 (448)
Q Consensus 151 kyC~tC~i~RPpRs~HCs~C~~ 172 (448)
--|.+|.+.-++.+.+|..|+.
T Consensus 8 W~C~~C~~~N~~~~~kC~aC~t 29 (33)
T 3gj3_B 8 WDCDTCLVQNKPEAVKCVACET 29 (33)
T ss_dssp EECTTTCCEECTTCSBCTTTCC
T ss_pred eeCCcccCCCccccCEEcccCC
Confidence 4599999998999999988863
Done!