Query 013191
Match_columns 448
No_of_seqs 310 out of 1719
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 05:54:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013191.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013191hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayja1 g.41.8.7 (A:1-56) Ribo 71.5 0.99 7.2E-05 31.5 2.2 25 149-173 18-42 (56)
2 d2pg3a1 c.26.2.1 (A:1-230) Que 52.5 1.6 0.00012 37.6 0.5 25 150-176 182-206 (230)
3 d2dkta2 g.93.1.1 (A:82-137) RI 44.4 2.7 0.00019 29.3 0.4 14 163-176 33-46 (56)
4 d2dmda2 g.37.1.1 (A:8-33) Zinc 43.3 3.2 0.00024 23.8 0.6 15 165-179 2-16 (26)
5 d1vfya_ g.50.1.1 (A:) vps27p p 41.8 4.4 0.00032 28.8 1.4 22 153-174 8-31 (67)
6 d2adra2 g.37.1.1 (A:131-161) A 35.1 3.6 0.00026 24.9 -0.1 14 165-178 2-15 (31)
7 d1dvpa2 g.50.1.1 (A:149-220) H 34.4 6.7 0.00049 28.2 1.4 24 151-174 14-39 (72)
8 d2c6aa1 g.41.11.1 (A:290-335) 34.3 8 0.00058 25.6 1.5 20 151-170 14-33 (46)
9 d1njqa_ g.37.1.3 (A:) SUPERMAN 33.3 5.9 0.00043 25.2 0.7 13 161-173 2-14 (37)
10 d1wfka_ g.50.1.1 (A:) Zinc fin 33.0 6.1 0.00044 29.7 0.9 25 150-174 9-35 (88)
11 d1joca1 g.50.1.1 (A:1348-1411) 32.4 5.7 0.00041 27.9 0.6 24 151-174 9-34 (64)
12 d2cr8a1 g.41.11.1 (A:8-48) MDM 27.0 13 0.00093 23.9 1.5 20 151-170 5-24 (41)
No 1
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=71.49 E-value=0.99 Score=31.45 Aligned_cols=25 Identities=28% Similarity=0.680 Sum_probs=21.9
Q ss_pred eeeeccCCCCccCCCCCCCCCCCcc
Q 013191 149 KIKYCDTCMHYRPPRCSHCSICNNC 173 (448)
Q Consensus 149 ~~kyC~tC~i~RPpRs~HCs~C~~C 173 (448)
..+.|..|...-|+||..|+.|+.=
T Consensus 18 ~k~ICrkC~AR~p~rAt~CRKCg~~ 42 (56)
T d2ayja1 18 LKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCC
T ss_pred hhHHHhhccccCCccccccccCCCC
Confidence 4578999999999999999988753
No 2
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=52.53 E-value=1.6 Score=37.63 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=20.9
Q ss_pred eeeccCCCCccCCCCCCCCCCCccccc
Q 013191 150 IKYCDTCMHYRPPRCSHCSICNNCVQK 176 (448)
Q Consensus 150 ~kyC~tC~i~RPpRs~HCs~C~~CV~r 176 (448)
.....+| |+|.|.+||-.|..|++|
T Consensus 182 ~~~T~SC--y~~~~~~~CG~C~~C~~R 206 (230)
T d2pg3a1 182 RYHTLTC--YNGIKGDGCGQCAACHLR 206 (230)
T ss_dssp HHHCCCC--TTSCCTTTTSCSHHHHHH
T ss_pred hhccCCC--CCCCCCCCCCCCHhHHHH
Confidence 3455678 788899999999999998
No 3
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=44.36 E-value=2.7 Score=29.31 Aligned_cols=14 Identities=36% Similarity=0.835 Sum_probs=7.2
Q ss_pred CCCCCCCCCccccc
Q 013191 163 RCSHCSICNNCVQK 176 (448)
Q Consensus 163 Rs~HCs~C~~CV~r 176 (448)
--.||..|+-|+..
T Consensus 33 ~ffHC~~C~~C~~~ 46 (56)
T d2dkta2 33 DFFHCLKCNLCLTT 46 (56)
T ss_dssp GEEEETTTTEEEEG
T ss_pred cccccCccccccCc
Confidence 34555555555533
No 4
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.27 E-value=3.2 Score=23.83 Aligned_cols=15 Identities=27% Similarity=0.986 Sum_probs=12.4
Q ss_pred CCCCCCCcccccccc
Q 013191 165 SHCSICNNCVQKFDH 179 (448)
Q Consensus 165 ~HCs~C~~CV~rfDH 179 (448)
|.|.+|++|-.|-|.
T Consensus 2 hkc~~c~kcfsrkdk 16 (26)
T d2dmda2 2 HKCEVCGKCFSRKDK 16 (26)
T ss_dssp CCBTTTTBCCCCHHH
T ss_pred CccchhhhHhcchhH
Confidence 679999999888663
No 5
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=41.79 E-value=4.4 Score=28.78 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=15.8
Q ss_pred ccCCCC--ccCCCCCCCCCCCccc
Q 013191 153 CDTCMH--YRPPRCSHCSICNNCV 174 (448)
Q Consensus 153 C~tC~i--~RPpRs~HCs~C~~CV 174 (448)
|..|.. -.-.|-|||+.|++-+
T Consensus 8 C~~C~~~F~~~~rkhhCr~CG~~f 31 (67)
T d1vfya_ 8 CMICSKKFSLLNRKHHCRSCGGVF 31 (67)
T ss_dssp CTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cccCCCcccCcccccccccCCCEe
Confidence 777764 2345889999999754
No 6
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=35.10 E-value=3.6 Score=24.93 Aligned_cols=14 Identities=29% Similarity=0.764 Sum_probs=12.3
Q ss_pred CCCCCCCccccccc
Q 013191 165 SHCSICNNCVQKFD 178 (448)
Q Consensus 165 ~HCs~C~~CV~rfD 178 (448)
.+|.+|+||-.|.|
T Consensus 2 f~C~~C~R~FaRrD 15 (31)
T d2adra2 2 YPCGLCNRAFTRRD 15 (31)
T ss_dssp EECTTTCCEESSHH
T ss_pred cccccccchhhHHH
Confidence 47999999999887
No 7
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=34.41 E-value=6.7 Score=28.22 Aligned_cols=24 Identities=25% Similarity=0.613 Sum_probs=17.1
Q ss_pred eeccCCCC--ccCCCCCCCCCCCccc
Q 013191 151 KYCDTCMH--YRPPRCSHCSICNNCV 174 (448)
Q Consensus 151 kyC~tC~i--~RPpRs~HCs~C~~CV 174 (448)
..|..|.. ----|-|||+.|++.+
T Consensus 14 ~~C~~C~~~F~~~~rrhhCr~CG~~~ 39 (72)
T d1dvpa2 14 RVCHRCRVEFTFTNRKHHCRNCGQVF 39 (72)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccccCCCcccCccccccccccCCee
Confidence 34888865 2335889999998854
No 8
>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.25 E-value=8 Score=25.56 Aligned_cols=20 Identities=40% Similarity=0.946 Sum_probs=17.4
Q ss_pred eeccCCCCccCCCCCCCCCC
Q 013191 151 KYCDTCMHYRPPRCSHCSIC 170 (448)
Q Consensus 151 kyC~tC~i~RPpRs~HCs~C 170 (448)
-.|..|+..-||-..||..|
T Consensus 14 WkC~~C~~~N~Pl~ryC~rC 33 (46)
T d2c6aa1 14 WKCTSCNEMNPPLPSHCNRC 33 (46)
T ss_dssp EECTTTCCEECSSCSSCTTT
T ss_pred ccCccccccCCcchhHhHHH
Confidence 56999999999999998776
No 9
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=33.30 E-value=5.9 Score=25.15 Aligned_cols=13 Identities=46% Similarity=1.078 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCcc
Q 013191 161 PPRCSHCSICNNC 173 (448)
Q Consensus 161 PpRs~HCs~C~~C 173 (448)
|+|.+-|++|++-
T Consensus 2 p~r~~~C~~C~k~ 14 (37)
T d1njqa_ 2 PPRSYTCSFCKRE 14 (37)
T ss_dssp CSSSEECTTTCCE
T ss_pred CCCccCCCCCCCc
Confidence 7899999999874
No 10
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.00 E-value=6.1 Score=29.69 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=17.7
Q ss_pred eeeccCCCC--ccCCCCCCCCCCCccc
Q 013191 150 IKYCDTCMH--YRPPRCSHCSICNNCV 174 (448)
Q Consensus 150 ~kyC~tC~i--~RPpRs~HCs~C~~CV 174 (448)
...|..|.. ----|-|||+.|++.+
T Consensus 9 ~s~C~~C~~~Fs~~~rrhhCr~CG~vf 35 (88)
T d1wfka_ 9 ESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred cCcCcccCchhccccccccccccChhh
Confidence 356888865 2345789999999853
No 11
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.36 E-value=5.7 Score=27.90 Aligned_cols=24 Identities=29% Similarity=0.620 Sum_probs=16.4
Q ss_pred eeccCCCC--ccCCCCCCCCCCCccc
Q 013191 151 KYCDTCMH--YRPPRCSHCSICNNCV 174 (448)
Q Consensus 151 kyC~tC~i--~RPpRs~HCs~C~~CV 174 (448)
+-|..|.. .---|-|||+.|++.+
T Consensus 9 ~~C~~C~~~F~~~~rrHHCR~CG~v~ 34 (64)
T d1joca1 9 QNCMACGKGFSVTVRRHHCRQCGNIF 34 (64)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CcCcCcCCcccCCccccchhhhCCee
Confidence 45777754 2234789999999854
No 12
>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.97 E-value=13 Score=23.92 Aligned_cols=20 Identities=25% Similarity=0.712 Sum_probs=15.7
Q ss_pred eeccCCCCccCCCCCCCCCC
Q 013191 151 KYCDTCMHYRPPRCSHCSIC 170 (448)
Q Consensus 151 kyC~tC~i~RPpRs~HCs~C 170 (448)
-.|..|+..-||=..||..|
T Consensus 5 WkC~~C~~~N~Pl~ryC~rC 24 (41)
T d2cr8a1 5 WQCTECKKFNSPSKRYCFRC 24 (41)
T ss_dssp EECSSSCCEECSSCCBCTTT
T ss_pred eecCcccccCCcchhHHHHH
Confidence 35888888888888887766
Done!