BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013195
         (448 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359493166|ref|XP_002268292.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
           [Vitis vinifera]
          Length = 622

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/443 (86%), Positives = 412/443 (93%), Gaps = 4/443 (0%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           MEDIEDLL G+G GGAPPGFRLP+ +VG  PK NKNKP L      K+      IPGT+T
Sbjct: 1   MEDIEDLLVGNGVGGAPPGFRLPLASVGFKPKQNKNKPNLE----KKSHIQDYIIPGTQT 56

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IYMKTFGCSHNQSDSEYMAGQL+AFGY L+DN EEAD+WLINTCTVKSPSQSAMDTLI K
Sbjct: 57  IYMKTFGCSHNQSDSEYMAGQLAAFGYVLSDNPEEADLWLINTCTVKSPSQSAMDTLITK 116

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            +S+KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL+RK LP
Sbjct: 117 GRSSKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLP 176

Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
           ALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV+SLVGRVRTVIADGVKE
Sbjct: 177 ALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVGRVRTVIADGVKE 236

Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
           +WLSSEDTGAYGRDIGV LPILLNAIV+ELPPDG TMLRIGMTNPP+ILEHLKE+A VLR
Sbjct: 237 IWLSSEDTGAYGRDIGVTLPILLNAIVSELPPDGGTMLRIGMTNPPYILEHLKEMAVVLR 296

Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
           HPCVYSFLHVPVQSGSDA+LSAMNREYT+++FRTVVDTL ELVPGMQIATDIICGFPGET
Sbjct: 297 HPCVYSFLHVPVQSGSDAILSAMNREYTVTEFRTVVDTLTELVPGMQIATDIICGFPGET 356

Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPY 420
           DE+F QTV+LI+EY+FPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS+FEAFTPY
Sbjct: 357 DEEFAQTVSLIQEYRFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSIFEAFTPY 416

Query: 421 LGMEGRVERIWITEIAADGIHLV 443
            GMEGRVERIWI+EIA DGIHLV
Sbjct: 417 NGMEGRVERIWISEIATDGIHLV 439


>gi|449447617|ref|XP_004141564.1| PREDICTED: threonylcarbamoyladenosine tRNA
           methylthiotransferase-like [Cucumis sativus]
          Length = 635

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/449 (85%), Positives = 408/449 (90%), Gaps = 7/449 (1%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKY-NKNKPRLHDNHLSKTGS-----LSPK 54
           MEDIEDLL G GGG  P G+RLPI AVGV PK  N  K     +  S   S     L PK
Sbjct: 1   MEDIEDLLIGGGGGAPP-GYRLPITAVGVKPKKKNMFKSNASADDSSNEPSPIQNPLVPK 59

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT+TIY+KTFGCSHNQSDSEYMAGQLSAFGY L+DN E+AD+WLINTCTVKSPSQSAM
Sbjct: 60  IPGTQTIYVKTFGCSHNQSDSEYMAGQLSAFGYLLSDNPEDADLWLINTCTVKSPSQSAM 119

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
           DTLI KCK+AKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 120 DTLITKCKNAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 179

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
           +RK LPALDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVR+VI
Sbjct: 180 NRKTLPALDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVRRVRSVI 239

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
            +GV+E+WLSSEDTGAYGRDIGVNLPILLNAIV+ELP D STMLRIGMTNPPFILEHLKE
Sbjct: 240 NEGVREIWLSSEDTGAYGRDIGVNLPILLNAIVSELPSDASTMLRIGMTNPPFILEHLKE 299

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           IA+VL HPCVYSFLHVPVQSGSDA+LSAMNREYT+S+FRTVVDTL ELVPGMQIATDIIC
Sbjct: 300 IAKVLSHPCVYSFLHVPVQSGSDAILSAMNREYTVSEFRTVVDTLTELVPGMQIATDIIC 359

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           GFPGETDEDF +T+NLIKEY  PQVHISQFYPRPGTPAARMKKVPSA+VKKRSRELTSVF
Sbjct: 360 GFPGETDEDFCETINLIKEYNLPQVHISQFYPRPGTPAARMKKVPSAIVKKRSRELTSVF 419

Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHLV 443
           EAFTPY GMEGRVERIWITEIAADGIHLV
Sbjct: 420 EAFTPYNGMEGRVERIWITEIAADGIHLV 448


>gi|255561612|ref|XP_002521816.1| radical sam protein, putative [Ricinus communis]
 gi|223539029|gb|EEF40626.1| radical sam protein, putative [Ricinus communis]
          Length = 630

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/446 (86%), Positives = 407/446 (91%), Gaps = 3/446 (0%)

Query: 1   MEDIEDLL-AGSGGGGAPPGFRLPINAVGVNPK--YNKNKPRLHDNHLSKTGSLSPKIPG 57
           MEDIEDLL     GGGAPPGFRLP+N+VGV PK    KNK  L+         LSPKIPG
Sbjct: 1   MEDIEDLLIGSGSGGGAPPGFRLPLNSVGVYPKKIIKKNKGYLNHGISLSQSLLSPKIPG 60

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
           T+TIY+KTFGCSHNQSDSEYMAGQLS+FGYALTD  E+ D+WLINTCTVKSPSQSAMDT+
Sbjct: 61  TQTIYIKTFGCSHNQSDSEYMAGQLSSFGYALTDIPEDGDLWLINTCTVKSPSQSAMDTI 120

Query: 118 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
           IAK KSAKKPLVVAGCVPQGSR+LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL RK
Sbjct: 121 IAKGKSAKKPLVVAGCVPQGSRNLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLTRK 180

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
            LPALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYT++SLVGRVRTV+ DG
Sbjct: 181 TLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVRTVVGDG 240

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
           VKE+WLSSEDTGAYGRDIGVNLP LLNAIV+ELP D STMLRIGMTNPPFILEHLKEIAE
Sbjct: 241 VKEIWLSSEDTGAYGRDIGVNLPRLLNAIVSELPADASTMLRIGMTNPPFILEHLKEIAE 300

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
           VLRHPCVYSFLHVPVQSGSD VL+AMNREYT+S+FRTVVDTL ELVPGMQIATDIICGFP
Sbjct: 301 VLRHPCVYSFLHVPVQSGSDNVLNAMNREYTVSNFRTVVDTLTELVPGMQIATDIICGFP 360

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 417
           GETD+DF QTV+LI EYK PQVHISQFYPRPGTPAARMKKVPS +VKKRSRELT+VFEAF
Sbjct: 361 GETDDDFAQTVSLINEYKLPQVHISQFYPRPGTPAARMKKVPSNIVKKRSRELTAVFEAF 420

Query: 418 TPYLGMEGRVERIWITEIAADGIHLV 443
           TPY GMEGRVERIWITEIA DGIHLV
Sbjct: 421 TPYNGMEGRVERIWITEIATDGIHLV 446


>gi|449506818|ref|XP_004162857.1| PREDICTED: threonylcarbamoyladenosine tRNA
           methylthiotransferase-like [Cucumis sativus]
          Length = 635

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/449 (84%), Positives = 407/449 (90%), Gaps = 7/449 (1%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKY-NKNKPRLHDNHLSKTGS-----LSPK 54
           MEDIEDLL G GGG  P G+RLP+ AVGV PK  N  K     +  S   S     L PK
Sbjct: 1   MEDIEDLLIGGGGGAPP-GYRLPLTAVGVKPKKKNMFKSNASADDSSNEPSPIQNPLVPK 59

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT+TIY+KTFGCSHNQSDSEYMAGQLSAFGY L+DN E+AD+WLINTCTVKSPSQSAM
Sbjct: 60  IPGTQTIYVKTFGCSHNQSDSEYMAGQLSAFGYLLSDNPEDADLWLINTCTVKSPSQSAM 119

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
           DTLI KCK+AKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 120 DTLITKCKNAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 179

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
           +RK LPALDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RVR+VI
Sbjct: 180 NRKTLPALDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTLDSLVRRVRSVI 239

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
            +GV+E+WLSSEDTGAYGRDIGV LPILLNAIV+ELP D STMLRIGMTNPPFILEHLKE
Sbjct: 240 NEGVREIWLSSEDTGAYGRDIGVTLPILLNAIVSELPSDASTMLRIGMTNPPFILEHLKE 299

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           IA+VL HPCVYSFLHVPVQSGSDA+LSAMNREYT+S+FRTVVDTL ELVPGMQIATDIIC
Sbjct: 300 IAKVLSHPCVYSFLHVPVQSGSDAILSAMNREYTVSEFRTVVDTLTELVPGMQIATDIIC 359

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           GFPGETDEDF +T+NLIKEY  PQVHISQFYPRPGTPAARMKKVPSA+VKKRSRELTSVF
Sbjct: 360 GFPGETDEDFCETINLIKEYNLPQVHISQFYPRPGTPAARMKKVPSAIVKKRSRELTSVF 419

Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHLV 443
           EAFTPY GMEGRVERIWITEIAADGIHLV
Sbjct: 420 EAFTPYNGMEGRVERIWITEIAADGIHLV 448


>gi|224135639|ref|XP_002327268.1| predicted protein [Populus trichocarpa]
 gi|222835638|gb|EEE74073.1| predicted protein [Populus trichocarpa]
          Length = 612

 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/443 (85%), Positives = 408/443 (92%), Gaps = 15/443 (3%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           MEDIEDLL G+G G +PPGFRLP+NAVGVN K NKNKP+LH   LS+T  +S KIPGT  
Sbjct: 1   MEDIEDLLVGNGSG-SPPGFRLPLNAVGVNLKKNKNKPKLHAKQLSET-PISSKIPGT-- 56

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
                      QSDSEYMAGQLS+FGY+L+D+ EEAD+WLINTCTVKSPSQSAMDTLI+K
Sbjct: 57  -----------QSDSEYMAGQLSSFGYSLSDSPEEADLWLINTCTVKSPSQSAMDTLISK 105

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            KSAKKPLVVAGCVPQGSR++KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL+RK LP
Sbjct: 106 GKSAKKPLVVAGCVPQGSRNVKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLP 165

Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
           ALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV+SL GRV+TVI DGVKE
Sbjct: 166 ALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLAGRVKTVIDDGVKE 225

Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
           +WLSSEDTGAYGRDIGVNLPILLNAIVAELP DGSTMLRIGMTNPPFILEHLKEIAEVLR
Sbjct: 226 IWLSSEDTGAYGRDIGVNLPILLNAIVAELPSDGSTMLRIGMTNPPFILEHLKEIAEVLR 285

Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
           HPCVYSFLHVPVQSGSDA+L+AMNREYT+++FRTVVDTL ELVPGMQIATDIICGFPGET
Sbjct: 286 HPCVYSFLHVPVQSGSDAILTAMNREYTVNEFRTVVDTLTELVPGMQIATDIICGFPGET 345

Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPY 420
           D+DF+QTVNLIK YKF QVHISQFYPRPGTPAARMKKVPS +VK+RSRELTSVFEAFTPY
Sbjct: 346 DKDFSQTVNLIKAYKFAQVHISQFYPRPGTPAARMKKVPSNIVKQRSRELTSVFEAFTPY 405

Query: 421 LGMEGRVERIWITEIAADGIHLV 443
            GMEGRVERIWIT+IAADGIHLV
Sbjct: 406 NGMEGRVERIWITDIAADGIHLV 428


>gi|297839059|ref|XP_002887411.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333252|gb|EFH63670.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 602

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/450 (82%), Positives = 403/450 (89%), Gaps = 9/450 (2%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNH----LSKTGSLSP--- 53
           MEDIEDLLAG  GG  P  FRLP+NAVG+NPK NK+K R+         S   SL+P   
Sbjct: 1   MEDIEDLLAGGVGGAPPG-FRLPLNAVGINPKTNKSK-RVSSKQDQITASNRDSLAPPSL 58

Query: 54  KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
           KIPGT+TIY+KTFGCSHNQSDSEYMAGQL+AFGYALT+  E+AD+WLINTCTVKSPSQSA
Sbjct: 59  KIPGTQTIYIKTFGCSHNQSDSEYMAGQLTAFGYALTEVPEDADLWLINTCTVKSPSQSA 118

Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
           M TLI + +S KKPLV+AGCVPQGSRDLKELEGVS+VGVQQIDRVVE+VEETLKGHEVRL
Sbjct: 119 MSTLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRL 178

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
           L RK LPALDLPKVRRN F+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVRTV
Sbjct: 179 LTRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVERVRTV 238

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
           I++GVKE+WLSSEDTGAYGRDIGVNLPILLNAIV ELP D STMLRIGMTNPPFILEHLK
Sbjct: 239 ISEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLK 298

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           EIA VLRHPCVY+FLHVPVQSGSD+VL+AMNREYT S+FRTVVDTL ELVPGMQIATDII
Sbjct: 299 EIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFRTVVDTLTELVPGMQIATDII 358

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFPGETDEDF+QTV LIK+YKF QVHISQFYPRPGTPAA+MKKV S +VK+RSR+LTSV
Sbjct: 359 CGFPGETDEDFSQTVELIKDYKFSQVHISQFYPRPGTPAAKMKKVQSKIVKQRSRDLTSV 418

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           FEAF PY GMEGR ERIWITEIA DGIHLV
Sbjct: 419 FEAFAPYTGMEGREERIWITEIATDGIHLV 448


>gi|18409989|ref|NP_565035.1| Methylthiotransferase [Arabidopsis thaliana]
 gi|12322201|gb|AAG51137.1|AC069273_8 unknown protein [Arabidopsis thaliana]
 gi|14194137|gb|AAK56263.1|AF367274_1 At1g72090/F28P5_4 [Arabidopsis thaliana]
 gi|27363418|gb|AAO11628.1| At1g72090/F28P5_4 [Arabidopsis thaliana]
 gi|332197151|gb|AEE35272.1| Methylthiotransferase [Arabidopsis thaliana]
          Length = 601

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/450 (83%), Positives = 404/450 (89%), Gaps = 9/450 (2%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDN----HLSKTGSLSP--- 53
           MEDIEDLLAG  GG  P GFRLP+NAVG+NPK NK+K R+         S   SL+P   
Sbjct: 1   MEDIEDLLAGGVGGAPP-GFRLPLNAVGINPKTNKSK-RISSKPDQITASNRDSLAPPSM 58

Query: 54  KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
           KIPGT+TIY+KTFGCSHNQSDSEYMAGQLSAFGYALT+  EEAD+WLINTCTVKSPSQSA
Sbjct: 59  KIPGTQTIYIKTFGCSHNQSDSEYMAGQLSAFGYALTEVPEEADLWLINTCTVKSPSQSA 118

Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
           M TLI + +S KKPLV+AGCVPQGSRDLKELEGVS+VGVQQIDRVVE+VEETLKGHEVRL
Sbjct: 119 MSTLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRL 178

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
           L RK LPALDLPKVRRN F+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVRTV
Sbjct: 179 LTRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVERVRTV 238

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
           I++GVKE+WLSSEDTGAYGRDIGVNLPILLNAIV ELP D STMLRIGMTNPPFILEHLK
Sbjct: 239 ISEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLK 298

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           EIA VLRHPCVY+FLHVPVQSGSD+VL+AMNREYT S+FRTVVDTL ELVPGMQIATDII
Sbjct: 299 EIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFRTVVDTLTELVPGMQIATDII 358

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFPGETDEDF+QTV LIK+YKFPQVHISQFYPRPGTPAA+MKKV S +VK+RSRELTSV
Sbjct: 359 CGFPGETDEDFSQTVELIKDYKFPQVHISQFYPRPGTPAAKMKKVQSKIVKQRSRELTSV 418

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           FEAF PY GME R ERIWITE+A DGIHLV
Sbjct: 419 FEAFAPYTGMECREERIWITEVATDGIHLV 448


>gi|356542899|ref|XP_003539902.1| PREDICTED: CDKAL1-like protein-like [Glycine max]
          Length = 609

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/444 (82%), Positives = 404/444 (90%), Gaps = 12/444 (2%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINA-VGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTE 59
           MEDIEDLL GS     PPGFRLP+ A VGV  K N+          S + S SP IPGT+
Sbjct: 1   MEDIEDLLIGSA---TPPGFRLPLAAAVGVGTKRNQLS--------SSSLSPSPAIPGTQ 49

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           TI++KTFGCSHNQSDSEYMAGQLSAFGY+L+D+ + AD+WLINTCTVKSPSQSAMDT+I+
Sbjct: 50  TIFIKTFGCSHNQSDSEYMAGQLSAFGYSLSDDPDHADLWLINTCTVKSPSQSAMDTIIS 109

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           K KS+ KPLVVAGCVPQGSRDLKELEG+SIVGVQQIDRVVE+VEETLKGHEVRLL RKKL
Sbjct: 110 KGKSSNKPLVVAGCVPQGSRDLKELEGISIVGVQQIDRVVEIVEETLKGHEVRLLTRKKL 169

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           PALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYT++SLVGRV++VI++GVK
Sbjct: 170 PALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVKSVISEGVK 229

Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
           E+WLSSEDTGAYGRDIGVNLP LLNA+VAELP D STMLRIGMTNPP+ILEHLKEIAE+L
Sbjct: 230 EIWLSSEDTGAYGRDIGVNLPTLLNALVAELPADASTMLRIGMTNPPYILEHLKEIAEIL 289

Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
           RHPCVYSFLHVPVQSGSD +LSAMNREYT+S+FRTVVDTL ELVP MQIATDIICGFPGE
Sbjct: 290 RHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFRTVVDTLTELVPEMQIATDIICGFPGE 349

Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 419
           TDEDF QT+NLIKEYK PQVHISQFYPRPGTPAARMKKVPS VVK+RSRELT+VFE+FTP
Sbjct: 350 TDEDFLQTINLIKEYKLPQVHISQFYPRPGTPAARMKKVPSNVVKRRSRELTNVFESFTP 409

Query: 420 YLGMEGRVERIWITEIAADGIHLV 443
           Y GMEG+VERIWIT+IA+DG+HLV
Sbjct: 410 YSGMEGKVERIWITDIASDGVHLV 433


>gi|357111240|ref|XP_003557422.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
           [Brachypodium distachyon]
          Length = 624

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/445 (80%), Positives = 393/445 (88%), Gaps = 8/445 (1%)

Query: 1   MEDIEDLL--AGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT 58
           MEDIED+L  AG  GGGAPPG RLP++ V V PK  +   RL             +IPGT
Sbjct: 1   MEDIEDVLGPAGFSGGGAPPGLRLPLSTVAVKPK--RRSSRLAQTQQQPEA----RIPGT 54

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T+  E AD+WLINTCTVK+PSQSAM TLI
Sbjct: 55  QTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLI 114

Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
           +KCK+A KPLVVAGCVPQGSRDLKELEG+SI+GVQQIDRVVEVVEETLKGHEVRLL RK 
Sbjct: 115 SKCKNANKPLVVAGCVPQGSRDLKELEGISIIGVQQIDRVVEVVEETLKGHEVRLLSRKT 174

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
           LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSY+++ LV RV+ V+++GV
Sbjct: 175 LPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYSIDGLVDRVKIVVSEGV 234

Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           +E+WLSSEDTGAYGRDIG NLP LL+AIVAELP D STMLRIGMTNPPFILEHL EIA V
Sbjct: 235 REIWLSSEDTGAYGRDIGTNLPNLLSAIVAELPADRSTMLRIGMTNPPFILEHLNEIASV 294

Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
           LRHPCVY+FLHVPVQSGSDAVL AMNREYT+S+FR VVDTL ELVPGMQIATDIICGFPG
Sbjct: 295 LRHPCVYTFLHVPVQSGSDAVLKAMNREYTVSEFRMVVDTLCELVPGMQIATDIICGFPG 354

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 418
           ETDEDF QTV LIKEYK PQVHISQFYPRPGTPAARMKKVPS  VKKRSRELTSVFEAF+
Sbjct: 355 ETDEDFAQTVKLIKEYKLPQVHISQFYPRPGTPAARMKKVPSIEVKKRSRELTSVFEAFS 414

Query: 419 PYLGMEGRVERIWITEIAADGIHLV 443
           PY G+EG+VERIWITEIA DG+HLV
Sbjct: 415 PYQGLEGKVERIWITEIATDGVHLV 439


>gi|242075846|ref|XP_002447859.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor]
 gi|241939042|gb|EES12187.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor]
          Length = 623

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/449 (79%), Positives = 395/449 (87%), Gaps = 16/449 (3%)

Query: 1   MEDIEDLL--AGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
           MEDIED+L  A   GGGAPPG RLP+ AV V PK             S+     P    +
Sbjct: 1   MEDIEDVLGPADLSGGGAPPGLRLPLAAVAVKPKRRS----------SRVAQAPPQPEAR 50

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T+  E AD+WLINTCTVK+PSQSAM
Sbjct: 51  IPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAM 110

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
            TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 111 TTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRLL 170

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
            RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV+
Sbjct: 171 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTVV 230

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
           ++GV+E+WLSSEDTGAYGRDI  NLP LLNAIVAELP D STMLRIGMTNPPFILEHLKE
Sbjct: 231 SEGVREIWLSSEDTGAYGRDISTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLKE 290

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           IA VL HPCVYSFLHVPVQSGSDAVL+AMNREYT+++FR VVDTL ELVPGMQIATDIIC
Sbjct: 291 IAAVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVAEFRKVVDTLYELVPGMQIATDIIC 350

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           GFPGETDEDF++TVNL+KEY+FPQVHISQFYPRPGTPAARMKKVPS  VKKRSRELTSVF
Sbjct: 351 GFPGETDEDFSETVNLVKEYQFPQVHISQFYPRPGTPAARMKKVPSNEVKKRSRELTSVF 410

Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHLV 443
           E F+PY GMEG+VERIWITEIA DG+HLV
Sbjct: 411 ELFSPYQGMEGKVERIWITEIATDGVHLV 439


>gi|38345374|emb|CAD40910.2| OSJNBa0088K19.13 [Oryza sativa Japonica Group]
          Length = 626

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/449 (79%), Positives = 392/449 (87%), Gaps = 15/449 (3%)

Query: 1   MEDIEDLLAGSGGGGAPPG--FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
           MEDIED+L  +G  G       RLP+ AV V PK    +PR      S+     P    +
Sbjct: 3   MEDIEDVLGPAGIAGGGAAPGLRLPLAAVAVKPK----RPRS-----SRVAQTRPQPEAR 53

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T+  E AD+WLINTCTVK+PSQSAM
Sbjct: 54  IPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAM 113

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
            TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 114 TTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLL 173

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
            RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V+
Sbjct: 174 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVV 233

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
           ++GV+E+WLSSEDTGAYGRDIG NLP LLN I AELP D STMLRIGMTNPPFILEHLKE
Sbjct: 234 SEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIAAELPADRSTMLRIGMTNPPFILEHLKE 293

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           IA VL HPCVYSFLHVPVQSGSDAVL+AMNREYT+S+FR VVDTL ELVPGMQIATDIIC
Sbjct: 294 IASVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATDIIC 353

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           GFPGETDEDF+QTVNL+K+Y FPQVHISQFYPRPGTPAARMKKVPS  VKKRSRELTSVF
Sbjct: 354 GFPGETDEDFSQTVNLVKQYLFPQVHISQFYPRPGTPAARMKKVPSVEVKKRSRELTSVF 413

Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHLV 443
           E+F+PY GMEG+VERIWITEIA DG+HLV
Sbjct: 414 ESFSPYQGMEGKVERIWITEIATDGVHLV 442


>gi|194693708|gb|ACF80938.1| unknown [Zea mays]
 gi|413918351|gb|AFW58283.1| hypothetical protein ZEAMMB73_571996 [Zea mays]
          Length = 626

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/449 (78%), Positives = 395/449 (87%), Gaps = 16/449 (3%)

Query: 1   MEDIEDLLAGSGGGGA--PPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPK---- 54
           MEDIED+L  +G  G   PPG RLP+ AV V PK             S+     P+    
Sbjct: 1   MEDIEDVLGAAGLSGGGAPPGLRLPLAAVAVKPKRRS----------SRVAQAPPQPEAG 50

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T++ E AD+WLINTCTVK+PSQSAM
Sbjct: 51  IPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEDPEGADLWLINTCTVKNPSQSAM 110

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
            TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 111 TTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRLL 170

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
            RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV+
Sbjct: 171 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTVV 230

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
           ++GV+E+WLSSEDTGAYGRDIG NLP LLNAIVAELP D STMLRIGMTNPPFILEHLKE
Sbjct: 231 SEGVREIWLSSEDTGAYGRDIGTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLKE 290

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           IA VL HPCVYSFLHVPVQSGSD+VL AMNREYT+ +FR VVDTL ELVPGMQIATDIIC
Sbjct: 291 IAAVLCHPCVYSFLHVPVQSGSDSVLKAMNREYTVGEFRKVVDTLCELVPGMQIATDIIC 350

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           GFPGETDEDF++TVNL+KEY+FPQVHISQFYPRPGTPAARMKKVPS  VKKRSRELTSVF
Sbjct: 351 GFPGETDEDFSETVNLVKEYQFPQVHISQFYPRPGTPAARMKKVPSNEVKKRSRELTSVF 410

Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHLV 443
           E+F+PY GMEG+VE+IWITEIA+DG+HLV
Sbjct: 411 ESFSPYQGMEGKVEKIWITEIASDGVHLV 439


>gi|218194881|gb|EEC77308.1| hypothetical protein OsI_15965 [Oryza sativa Indica Group]
          Length = 629

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/452 (78%), Positives = 394/452 (87%), Gaps = 18/452 (3%)

Query: 1   MEDIEDLLAGSGGGGAPPG--FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
           MEDIED+L  +G  G       RLP+ AV + PK    +PR      S+     P    +
Sbjct: 3   MEDIEDVLGPAGIAGGGAAPGLRLPLAAVALKPK----RPRS-----SRVAQTRPQPEAR 53

Query: 55  IPGTETIYMKTFGCSHNQ---SDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ 111
           IPGT+TIY+KTFGCSHNQ   SDSEYM+GQLSAFGYA+T+  E AD+WLINTCTVK+PSQ
Sbjct: 54  IPGTQTIYVKTFGCSHNQASFSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQ 113

Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
           SAM TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEV
Sbjct: 114 SAMTTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEV 173

Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
           RLL RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+
Sbjct: 174 RLLSRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVK 233

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
            V+++GV+E+WLSSEDTGAYGRDIG NLP LLN IVAELP D STMLRIGMTNPPFILEH
Sbjct: 234 IVVSEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIVAELPADRSTMLRIGMTNPPFILEH 293

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           LKEIA VL HPCVYSFLHVPVQSGSDAVL+AMNREYT+S+FR VVDTL ELVPGMQIATD
Sbjct: 294 LKEIASVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATD 353

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
           IICGFPGETDEDF+QTVNL+K+Y+FPQVHISQFYPRPGTPAARMKKVPS  VKKRSRELT
Sbjct: 354 IICGFPGETDEDFSQTVNLVKQYQFPQVHISQFYPRPGTPAARMKKVPSVEVKKRSRELT 413

Query: 412 SVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           SVFE+F+PY GMEG+VERIWITEIA DG+HLV
Sbjct: 414 SVFESFSPYQGMEGKVERIWITEIATDGVHLV 445


>gi|115458480|ref|NP_001052840.1| Os04g0434300 [Oryza sativa Japonica Group]
 gi|113564411|dbj|BAF14754.1| Os04g0434300, partial [Oryza sativa Japonica Group]
          Length = 621

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/428 (80%), Positives = 381/428 (89%), Gaps = 13/428 (3%)

Query: 20  FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----KIPGTETIYMKTFGCSHNQSDS 75
            RLP+ AV V PK    +PR      S+     P    +IPGT+TIY+KTFGCSHNQSDS
Sbjct: 19  LRLPLAAVAVKPK----RPRS-----SRVAQTRPQPEARIPGTQTIYVKTFGCSHNQSDS 69

Query: 76  EYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVP 135
           EYM+GQLSAFGYA+T+  E AD+WLINTCTVK+PSQSAM TLI+KCKSA KPLVVAGCVP
Sbjct: 70  EYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLISKCKSANKPLVVAGCVP 129

Query: 136 QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEI 195
           QGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRLL RK LP+LDLPKVR+NKF+EI
Sbjct: 130 QGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLLSRKTLPSLDLPKVRKNKFIEI 189

Query: 196 LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI 255
           LPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V+++GV+E+WLSSEDTGAYGRDI
Sbjct: 190 LPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVVSEGVREIWLSSEDTGAYGRDI 249

Query: 256 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 315
           G NLP LLN I AELP D STMLRIGMTNPPFILEHLKEIA VL HPCVYSFLHVPVQSG
Sbjct: 250 GTNLPNLLNGIAAELPADRSTMLRIGMTNPPFILEHLKEIASVLCHPCVYSFLHVPVQSG 309

Query: 316 SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375
           SDAVL+AMNREYT+S+FR VVDTL ELVPGMQIATDIICGFPGETDEDF+QTVNL+K+Y 
Sbjct: 310 SDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATDIICGFPGETDEDFSQTVNLVKQYL 369

Query: 376 FPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEI 435
           FPQVHISQFYPRPGTPAARMKKVPS  VKKRSRELTSVFE+F+PY GMEG+VERIWITEI
Sbjct: 370 FPQVHISQFYPRPGTPAARMKKVPSVEVKKRSRELTSVFESFSPYQGMEGKVERIWITEI 429

Query: 436 AADGIHLV 443
           A DG+HLV
Sbjct: 430 ATDGVHLV 437


>gi|296081133|emb|CBI18159.3| unnamed protein product [Vitis vinifera]
          Length = 549

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/366 (90%), Positives = 354/366 (96%)

Query: 78  MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137
           MAGQL+AFGY L+DN EEAD+WLINTCTVKSPSQSAMDTLI K +S+KKPLVVAGCVPQG
Sbjct: 1   MAGQLAAFGYVLSDNPEEADLWLINTCTVKSPSQSAMDTLITKGRSSKKPLVVAGCVPQG 60

Query: 138 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILP 197
           SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL+RK LPALDLPKVR+NKFVEILP
Sbjct: 61  SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLPALDLPKVRKNKFVEILP 120

Query: 198 INVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV 257
           INVGCLGACTYCKTKHARGHLGSYTV+SLVGRVRTVIADGVKE+WLSSEDTGAYGRDIGV
Sbjct: 121 INVGCLGACTYCKTKHARGHLGSYTVDSLVGRVRTVIADGVKEIWLSSEDTGAYGRDIGV 180

Query: 258 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317
            LPILLNAIV+ELPPDG TMLRIGMTNPP+ILEHLKE+A VLRHPCVYSFLHVPVQSGSD
Sbjct: 181 TLPILLNAIVSELPPDGGTMLRIGMTNPPYILEHLKEMAVVLRHPCVYSFLHVPVQSGSD 240

Query: 318 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377
           A+LSAMNREYT+++FRTVVDTL ELVPGMQIATDIICGFPGETDE+F QTV+LI+EY+FP
Sbjct: 241 AILSAMNREYTVTEFRTVVDTLTELVPGMQIATDIICGFPGETDEEFAQTVSLIQEYRFP 300

Query: 378 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAA 437
           QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS+FEAFTPY GMEGRVERIWI+EIA 
Sbjct: 301 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSIFEAFTPYNGMEGRVERIWISEIAT 360

Query: 438 DGIHLV 443
           DGIHLV
Sbjct: 361 DGIHLV 366


>gi|222628903|gb|EEE61035.1| hypothetical protein OsJ_14875 [Oryza sativa Japonica Group]
          Length = 613

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/449 (76%), Positives = 379/449 (84%), Gaps = 28/449 (6%)

Query: 1   MEDIEDLLAGSGGGGAPPG--FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
           MEDIED+L  +G  G       RLP+ AV V PK    +PR      S+     P    +
Sbjct: 3   MEDIEDVLGPAGIAGGGAAPGLRLPLAAVAVKPK----RPRS-----SRVAQTRPQPEAR 53

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT             QSDSEYM+GQLSAFGYA+T+  E AD+WLINTCTVK+PSQSAM
Sbjct: 54  IPGT-------------QSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAM 100

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
            TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 101 TTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLL 160

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
            RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V+
Sbjct: 161 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVV 220

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
           ++GV+E+WLSSEDTGAYGRDIG NLP LLN I AELP D STMLRIGMTNPPFILEHLKE
Sbjct: 221 SEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIAAELPADRSTMLRIGMTNPPFILEHLKE 280

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           IA VL HPCVYSFLHVPVQSGSDAVL+AMNREYT+S+FR VVDTL ELVPGMQIATDIIC
Sbjct: 281 IASVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATDIIC 340

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           GFPGETDEDF+QTVNL+K+Y FPQVHISQFYPRPGTPAARMKKVPS  VKKRSRELTSVF
Sbjct: 341 GFPGETDEDFSQTVNLVKQYLFPQVHISQFYPRPGTPAARMKKVPSVEVKKRSRELTSVF 400

Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHLV 443
           E+F+PY GMEG+VERIWITEIA DG+HLV
Sbjct: 401 ESFSPYQGMEGKVERIWITEIATDGVHLV 429


>gi|168060037|ref|XP_001782005.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666496|gb|EDQ53148.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 489

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/456 (68%), Positives = 368/456 (80%), Gaps = 20/456 (4%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLP-------------INAVGVNPKYNKNKPRLHDNHLSK 47
           MEDIED++   GG  AP G  LP              NAV + P+      R+  +   K
Sbjct: 1   MEDIEDMIGDFGG--APLGLHLPKTDSTSGSGRRNGTNAVTIKPRR-----RISAHSGGK 53

Query: 48  TGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVK 107
               S  +   +T+Y+KTFGCSHNQSDSEYMAGQLS +GY++TD  + AD+WLINTCTVK
Sbjct: 54  ESIDSVVLVAMQTVYLKTFGCSHNQSDSEYMAGQLSDYGYSVTDAPDGADLWLINTCTVK 113

Query: 108 SPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLK 167
           +PSQSAM+ LI K K A KPLVVAGCVPQG ++LK+LEGVS+VGVQQIDRVVEVVEETLK
Sbjct: 114 NPSQSAMENLIRKGKDAGKPLVVAGCVPQGDKNLKDLEGVSVVGVQQIDRVVEVVEETLK 173

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           GHEVRLL R  LP+LDLPKVR+NKFVEI+PINVGCLGACTYCKTKHARGHLGSY + SLV
Sbjct: 174 GHEVRLLRRSSLPSLDLPKVRKNKFVEIVPINVGCLGACTYCKTKHARGHLGSYPLASLV 233

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            RV+ V+A+GVKE+WLSSEDTGAYG D+G +LP LLNA+V  LP D S MLRIGMTNPP+
Sbjct: 234 DRVKGVVAEGVKEIWLSSEDTGAYGIDLGTDLPTLLNALVDVLPKDRSCMLRIGMTNPPY 293

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           IL+HL+ IA +L HPCVYSFLHVPVQSGSD VL AMNREYT+SDF+ V DTL+ LVP + 
Sbjct: 294 ILKHLESIAAILNHPCVYSFLHVPVQSGSDNVLCAMNREYTVSDFKKVADTLLRLVPDLH 353

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           +ATDIICGFPGET EDF  T+ L+KEYKF Q+HISQFYPRPGTPAARMK+VP+A VKKRS
Sbjct: 354 LATDIICGFPGETSEDFEATMALVKEYKFSQLHISQFYPRPGTPAARMKRVPTAEVKKRS 413

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           RELT++FE+F PY GMEG+ +R+W+T++A+DG+HLV
Sbjct: 414 RELTTLFESFNPYSGMEGKEQRVWVTDVASDGVHLV 449


>gi|302772983|ref|XP_002969909.1| hypothetical protein SELMODRAFT_31574 [Selaginella moellendorffii]
 gi|300162420|gb|EFJ29033.1| hypothetical protein SELMODRAFT_31574 [Selaginella moellendorffii]
          Length = 421

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 291/384 (75%), Positives = 347/384 (90%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           TI++KTFGC+HNQSDSEYMAGQL A+GY ++++ +EAD+WLINTCTVK+PSQSAM+TLI 
Sbjct: 1   TIFLKTFGCAHNQSDSEYMAGQLLAYGYKISEDPDEADLWLINTCTVKAPSQSAMETLIR 60

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           K K+   PLV+AGCVPQGS+DLK+LEGVS+VGVQQI RVVEVVEETLKGHEV+LL R  L
Sbjct: 61  KGKAQTIPLVIAGCVPQGSKDLKDLEGVSVVGVQQIQRVVEVVEETLKGHEVKLLRRSTL 120

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P+LDLPKVR+NKFVEI+PINVGCLG+CTYCKTKHARGHLGSY +E+LV R++ V+++GV 
Sbjct: 121 PSLDLPKVRKNKFVEIIPINVGCLGSCTYCKTKHARGHLGSYKIEALVKRLQGVVSEGVT 180

Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
           E+WLSSEDTGAYGRDIG ++P LL A+VAELP D S MLRIGMTNPP+IL+HLKEIAE+L
Sbjct: 181 EIWLSSEDTGAYGRDIGSDIPTLLRALVAELPRDRSVMLRIGMTNPPYILQHLKEIAEIL 240

Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
           RHPCVYSFLHVPVQSGSD+VL AM REYT+++F+ V DTLIELVP + IATDIICGFPGE
Sbjct: 241 RHPCVYSFLHVPVQSGSDSVLEAMKREYTVAEFKQVADTLIELVPDIHIATDIICGFPGE 300

Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 419
           T ++F++T+ LI+ YKFPQVHISQFYPRPGTPAARMK+VP+A VKKRSR LTS+FE+FTP
Sbjct: 301 TSDEFDKTMELIEHYKFPQVHISQFYPRPGTPAARMKRVPTAEVKKRSRLLTSLFESFTP 360

Query: 420 YLGMEGRVERIWITEIAADGIHLV 443
           Y  MEG+V R+W+T+ AADGIHLV
Sbjct: 361 YSDMEGKVYRVWVTDTAADGIHLV 384


>gi|302799254|ref|XP_002981386.1| hypothetical protein SELMODRAFT_52269 [Selaginella moellendorffii]
 gi|300150926|gb|EFJ17574.1| hypothetical protein SELMODRAFT_52269 [Selaginella moellendorffii]
          Length = 421

 Score =  635 bits (1639), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 290/384 (75%), Positives = 349/384 (90%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           TI++KTFGC+HNQSDSEYMAGQL A+GY ++++ +EAD+WLINTCTVK+PSQSAM+TLI 
Sbjct: 1   TIFVKTFGCAHNQSDSEYMAGQLLAYGYKISEDPDEADLWLINTCTVKAPSQSAMETLIR 60

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           K K+   PLV+AGCVPQGS+DLK+LEGVS+VGVQQI RVVEVVEETLKGHEV+LL R  L
Sbjct: 61  KGKAQTIPLVIAGCVPQGSKDLKDLEGVSVVGVQQIQRVVEVVEETLKGHEVKLLRRSTL 120

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P+LDLPKVR+NKFVEI+PINVGCLG+CTYCKTKHARGHLGSY +E+LV R++ V+++GV 
Sbjct: 121 PSLDLPKVRKNKFVEIIPINVGCLGSCTYCKTKHARGHLGSYKIEALVKRLQGVVSEGVT 180

Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
           E+WLSSEDTGAYGRDIG ++P LL+A+VAELP D S MLRIGMTNPP+IL+HLKEIAE+L
Sbjct: 181 EIWLSSEDTGAYGRDIGTDIPTLLHALVAELPRDRSVMLRIGMTNPPYILQHLKEIAEIL 240

Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
           RHPCVYSFLHVPVQSGSD+VL+AM REYT+++F+ V DTLIELVP + IATDIICGFPGE
Sbjct: 241 RHPCVYSFLHVPVQSGSDSVLAAMKREYTVAEFKQVADTLIELVPDIHIATDIICGFPGE 300

Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 419
           T ++F++T+ LI+ YKFPQVHISQFYPRPGTPAARMK+VP+A VKKRSR LT++FE+FTP
Sbjct: 301 TSDEFDKTMELIEHYKFPQVHISQFYPRPGTPAARMKRVPTAEVKKRSRLLTNLFESFTP 360

Query: 420 YLGMEGRVERIWITEIAADGIHLV 443
           Y  MEG+V R+W+T+ AADGIHLV
Sbjct: 361 YSDMEGKVYRVWVTDTAADGIHLV 384


>gi|223944159|gb|ACN26163.1| unknown [Zea mays]
 gi|413918349|gb|AFW58281.1| hypothetical protein ZEAMMB73_571996 [Zea mays]
          Length = 517

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 282/330 (85%), Positives = 311/330 (94%)

Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
           M TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRL
Sbjct: 1   MTTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRL 60

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
           L RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV
Sbjct: 61  LSRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTV 120

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
           +++GV+E+WLSSEDTGAYGRDIG NLP LLNAIVAELP D STMLRIGMTNPPFILEHLK
Sbjct: 121 VSEGVREIWLSSEDTGAYGRDIGTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLK 180

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           EIA VL HPCVYSFLHVPVQSGSD+VL AMNREYT+ +FR VVDTL ELVPGMQIATDII
Sbjct: 181 EIAAVLCHPCVYSFLHVPVQSGSDSVLKAMNREYTVGEFRKVVDTLCELVPGMQIATDII 240

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFPGETDEDF++TVNL+KEY+FPQVHISQFYPRPGTPAARMKKVPS  VKKRSRELTSV
Sbjct: 241 CGFPGETDEDFSETVNLVKEYQFPQVHISQFYPRPGTPAARMKKVPSNEVKKRSRELTSV 300

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           FE+F+PY GMEG+VE+IWITEIA+DG+HLV
Sbjct: 301 FESFSPYQGMEGKVEKIWITEIASDGVHLV 330


>gi|356523570|ref|XP_003530410.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated
           protein 1-like 1-like [Glycine max]
          Length = 518

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 285/334 (85%), Positives = 312/334 (93%)

Query: 110 SQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGH 169
           +QSAMDT+I K KS+ KPLVVAGCVPQGSRDLKEL+G+SIVGVQQI RVVE+VEETLKGH
Sbjct: 13  AQSAMDTIITKGKSSNKPLVVAGCVPQGSRDLKELQGISIVGVQQIHRVVEIVEETLKGH 72

Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           EVRLL RKKLP LDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYT++SLV R
Sbjct: 73  EVRLLTRKKLPTLDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVRR 132

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           V++VI++GV E+WLSSEDTGA GRDIGVN P LLNA+VAELP D STMLRIGMTNPP+IL
Sbjct: 133 VKSVISEGVXEIWLSSEDTGASGRDIGVNPPTLLNALVAELPADASTMLRIGMTNPPYIL 192

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           EHLK IAE+LRHPCVYSFLHVPVQSGSD +LSAMNREYT+S+FRTVVDTL ELVP MQIA
Sbjct: 193 EHLKXIAEILRHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFRTVVDTLTELVPEMQIA 252

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 409
           TDIIC FPGETDEDF QTVNLI+EYKFPQVHISQFYPRPGTPAARMKKVPS VVK+RSRE
Sbjct: 253 TDIICRFPGETDEDFVQTVNLIEEYKFPQVHISQFYPRPGTPAARMKKVPSNVVKRRSRE 312

Query: 410 LTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           LT VFE+FTPY GMEG+VERIWIT+IA+DG+HLV
Sbjct: 313 LTXVFESFTPYSGMEGKVERIWITDIASDGVHLV 346


>gi|145344300|ref|XP_001416674.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576900|gb|ABO94967.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 516

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 251/388 (64%), Positives = 315/388 (81%)

Query: 56  PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
           PGT  I++ TFGCSHN SDSE+MAGQL  +GY L D  E+AD WL+NTCTVK+PSQSAM+
Sbjct: 35  PGTAKIFVHTFGCSHNHSDSEFMAGQLRRYGYELVDAPEKADGWLVNTCTVKNPSQSAMN 94

Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
           T+I + K+A K +V+AGCVPQG +  KEL  VS++GV QIDRVVE +E TL G  VR+L 
Sbjct: 95  TVIERGKAANKAMVIAGCVPQGDKGAKELRDVSLLGVTQIDRVVEAMERTLAGDTVRMLE 154

Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
           +K LP+LDLPKVRRN+FVEILP++ GCLGACTYCKTKHARG LGSY + +LV RV   +A
Sbjct: 155 KKALPSLDLPKVRRNEFVEILPLSTGCLGACTYCKTKHARGDLGSYEISALVSRVEQAMA 214

Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
           +GV EVWLSSEDTGAYG D+G ++  L  AI A LP DGS MLR+GMTNPP+IL HL  +
Sbjct: 215 EGVSEVWLSSEDTGAYGIDLGTDVAALFRAITAVLPTDGSVMLRLGMTNPPYILAHLDAV 274

Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
           AE +RHP VY+++H+PVQSGS+AVL  M REYT+ +F+ V DTL+  VPGM IATDIICG
Sbjct: 275 AEAMRHPSVYAWMHIPVQSGSNAVLEGMKREYTVEEFKRVCDTLLAAVPGMVIATDIICG 334

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
           FPGETDE + +T++LI+EYKFP+VHISQFYPRPGTPAA+MK+VP+ +VK RSRELT++FE
Sbjct: 335 FPGETDEQWQETMSLIEEYKFPEVHISQFYPRPGTPAAKMKRVPTQIVKARSRELTALFE 394

Query: 416 AFTPYLGMEGRVERIWITEIAADGIHLV 443
           ++ P+  + G+ ER+W+++IA DG  LV
Sbjct: 395 SYMPHEHLVGKTERVWVSDIARDGTSLV 422


>gi|308801795|ref|XP_003078211.1| CDK5 activator-binding protein (ISS) [Ostreococcus tauri]
 gi|116056662|emb|CAL52951.1| CDK5 activator-binding protein (ISS) [Ostreococcus tauri]
          Length = 558

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 250/383 (65%), Positives = 314/383 (81%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I++ TFGCSHN SDSE+MAGQL ++GY L  ++ +AD WL+NTCTVK+PSQSAM+T++ +
Sbjct: 35  IFVHTFGCSHNHSDSEFMAGQLQSYGYELVKDASDADGWLVNTCTVKNPSQSAMNTVLER 94

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            K+A K L+VAGCVPQG +  KEL+ VS++GV QIDRVVE +E TL G  VR+L +K LP
Sbjct: 95  GKAANKALLVAGCVPQGDKGAKELKDVSLLGVTQIDRVVEAMERTLAGDTVRMLEKKTLP 154

Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
            LDLPKVRRN+FVEILP++ GCLGACTYCKTKHARG LGSY + +LV RV   I++GV E
Sbjct: 155 RLDLPKVRRNEFVEILPLSTGCLGACTYCKTKHARGDLGSYEISALVSRVEQAISEGVSE 214

Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
           VWLSSEDTGAYG D+G ++  L  AI A LP DGS MLR+GMTNPP+IL HL  +AE +R
Sbjct: 215 VWLSSEDTGAYGIDLGTDVAALFRAITAVLPTDGSVMLRLGMTNPPYILAHLDAVAEAMR 274

Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
           HP VY+++H+PVQSGS+AVL AM REYT+ +FRTV DTL+E VPGM IATD+ICGFPGET
Sbjct: 275 HPAVYAWMHIPVQSGSNAVLEAMKREYTVEEFRTVCDTLLEAVPGMVIATDVICGFPGET 334

Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPY 420
           DE + +T+ LI+EYKFP+VHISQFYPRPGTPAARMK+VP+ +VK RSRELT +FE++ P+
Sbjct: 335 DEQWRETMQLIEEYKFPEVHISQFYPRPGTPAARMKRVPTQIVKGRSRELTVLFESYQPH 394

Query: 421 LGMEGRVERIWITEIAADGIHLV 443
             + G+ ER+W+++IA DG  LV
Sbjct: 395 QHLVGKTERVWVSDIARDGTSLV 417


>gi|303286521|ref|XP_003062550.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456067|gb|EEH53369.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 542

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 245/389 (62%), Positives = 315/389 (80%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           +PG   ++++TFGCSHN SDSE+MAGQLSA+GY LT + E+AD+W++NTCTVK+PSQSAM
Sbjct: 108 VPGRAKVHVRTFGCSHNISDSEFMAGQLSAYGYTLTTSPEDADLWVVNTCTVKNPSQSAM 167

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
           +T+I + K+A K LV+AGCVPQG ++ +EL+ ++++GV QIDRVVE VE TL G  VR+L
Sbjct: 168 NTVIERGKAAGKKLVIAGCVPQGDKNARELDDLTLLGVTQIDRVVEAVERTLAGDAVRML 227

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
            +K LPALDLPK+RRN+ VEI+P++ GCLG CTYCKTKHARG LGSY  E+LV RV+T I
Sbjct: 228 AKKTLPALDLPKIRRNEHVEIVPLSTGCLGKCTYCKTKHARGELGSYAPEALVARVQTAI 287

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
           A+GV E+WLSSEDTGAYG D+G ++  LL  + A LP DGS MLR+GMTNPP+IL HL  
Sbjct: 288 AEGVTEIWLSSEDTGAYGIDLGTDVTRLLRDVTAALPKDGSCMLRLGMTNPPYILAHLDA 347

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           +AE + HP VY+FLH+PVQ+GSDAVL  M REY ++DF  VVDTL+E VPG+ IATDIIC
Sbjct: 348 VAEAMHHPGVYAFLHIPVQAGSDAVLGRMKREYVVADFEKVVDTLLERVPGITIATDIIC 407

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           GFPGET+ED+  T+ L ++Y F ++H+SQFYPRPGTPAARMKKV S  VK+RSRELT+  
Sbjct: 408 GFPGETEEDWEMTMALCRKYDFIELHLSQFYPRPGTPAARMKKVNSREVKRRSRELTNYI 467

Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHLV 443
           E++ P+  + G  +R+W+T+IA DGI LV
Sbjct: 468 ESYLPHGALVGTTQRVWVTDIAKDGISLV 496


>gi|384253319|gb|EIE26794.1| hypothetical protein COCSUDRAFT_35241 [Coccomyxa subellipsoidea
           C-169]
          Length = 494

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 253/387 (65%), Positives = 310/387 (80%), Gaps = 4/387 (1%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYAL--TDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           I++KTFGC+HN SDSEYM GQL  +GY L   D  + AD+WL+NTCTVK+PSQ+AM TL+
Sbjct: 14  IWVKTFGCAHNMSDSEYMMGQLQDYGYRLLADDKQDAADLWLVNTCTVKNPSQAAMSTLV 73

Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
           A+ K+  K LVV GCVPQG + + EL+ +S++GV QIDRVVE VEETL+G+ V +L +KK
Sbjct: 74  ARGKALNKKLVVCGCVPQGDKKVPELQDLSLLGVTQIDRVVEAVEETLRGNVVHMLAKKK 133

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG- 237
           LP LDLPKVRRN  VEILP++ GCLGACTYCKTKHARG LGSY + +LV R      D  
Sbjct: 134 LPRLDLPKVRRNAHVEILPLSTGCLGACTYCKTKHARGQLGSYELSALVHRAAAAAVDPL 193

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
           V+EVWLSSEDTGAYGRD+  +LP LL A+ A LP DG T+LRIGMTNPPFILEHL +IAE
Sbjct: 194 VREVWLSSEDTGAYGRDLDTSLPDLLRALTAALPSDGRTILRIGMTNPPFILEHLPDIAE 253

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
            L HPCV+S+LHVPVQSGSDAVL+AMNREYT ++FR V DTL+ELVPG+++ATDIICGFP
Sbjct: 254 ALNHPCVFSYLHVPVQSGSDAVLAAMNREYTSAEFRRVADTLLELVPGLELATDIICGFP 313

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 417
           GETDEDF  T+ L+++Y+FP  HISQFYPRPGTPAARMKK+P+ V K RSR LT++ + F
Sbjct: 314 GETDEDFEATMALVRQYRFPHTHISQFYPRPGTPAARMKKLPNGVAKARSRALTALVDGF 373

Query: 418 TP-YLGMEGRVERIWITEIAADGIHLV 443
              Y  + G ++R+ + E+AADG HLV
Sbjct: 374 GDCYQRLVGSLQRVCVVELAADGRHLV 400


>gi|307110241|gb|EFN58477.1| hypothetical protein CHLNCDRAFT_19538, partial [Chlorella
           variabilis]
          Length = 499

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 252/393 (64%), Positives = 308/393 (78%), Gaps = 4/393 (1%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD--NSEEADIWLINTCTVKSPSQS 112
           +PGT+ I++KTFGCSHN SDSEYM GQL  +G+ L D  +S  AD+WL+NTCTVKSPSQS
Sbjct: 63  VPGTQRIWVKTFGCSHNSSDSEYMMGQLQEYGFKLVDEADSAAADLWLLNTCTVKSPSQS 122

Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
           AMDTL+ + +   K L+VAGCVPQG R   EL G+S++GV QIDRVVE VEETLKGH V+
Sbjct: 123 AMDTLLRRGRRLGKALLVAGCVPQGDRRTAELRGLSLLGVTQIDRVVEAVEETLKGHTVQ 182

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           LL +K LP LDLPKVRRN+ +EILP++ GCLGACTYCKTKHARG LGSY    LV R   
Sbjct: 183 LLAKKALPRLDLPKVRRNRHIEILPLSTGCLGACTYCKTKHARGQLGSYDPAELVRRAAA 242

Query: 233 VIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
             AD  V+E+WLSSEDTGAYGRDIG +LP LL  +V  LPPDG  MLR+GMTNPPFILEH
Sbjct: 243 AAADPQVREIWLSSEDTGAYGRDIGTSLPALLRELVEVLPPDGRCMLRVGMTNPPFILEH 302

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           L E+  +LR   V+S+LHVPVQSGSDAVL+AM REY+ + FR V DTL+  VPG+++ATD
Sbjct: 303 LAEVGAILRDDRVFSYLHVPVQSGSDAVLTAMRREYSAAQFRRVCDTLLAAVPGLELATD 362

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
           IICGFPGET+ED   T+ L+ +Y+FP  HISQFYPRPGTPAARM++VP+AVVK+RSRE+T
Sbjct: 363 IICGFPGETEEDHGATLALLDKYRFPHCHISQFYPRPGTPAARMRRVPTAVVKQRSREVT 422

Query: 412 SVFEAFT-PYLGMEGRVERIWITEIAADGIHLV 443
           +  E++   Y G+ G  +R  + + AADG+H V
Sbjct: 423 AAVESWCGSYSGLVGATQRCCVVDTAADGVHAV 455


>gi|255075877|ref|XP_002501613.1| predicted protein [Micromonas sp. RCC299]
 gi|226516877|gb|ACO62871.1| predicted protein [Micromonas sp. RCC299]
          Length = 435

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 239/389 (61%), Positives = 311/389 (79%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           +PG   +++KTFGCSHN SDSE+MAGQL A+GY L  + ++AD+W++NTCTVK+PSQSAM
Sbjct: 3   VPGVAKVHVKTFGCSHNHSDSEFMAGQLGAYGYDLVTDPDDADVWVVNTCTVKNPSQSAM 62

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
           +T+I K K+  K LV+AGCVPQG +  KELE +S++GV QIDR+V+VVE TL G  VRLL
Sbjct: 63  NTVITKGKAQGKKLVIAGCVPQGDKKAKELEDLSLIGVTQIDRIVDVVERTLAGDAVRLL 122

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
            +K LP+LDLPKVRRN+ VEILP++ GCLG CTYCKTKHARG LGSY+ E+LV RV+T I
Sbjct: 123 EKKPLPSLDLPKVRRNEHVEILPLSTGCLGQCTYCKTKHARGELGSYSPEALVQRVQTAI 182

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
           A+GV E+WLSSEDTGAYG D+G ++  LL  + A LP DGS MLR+GMTNPP+IL HL  
Sbjct: 183 AEGVTEIWLSSEDTGAYGIDLGTDITRLLRDLTAVLPTDGSCMLRLGMTNPPYILAHLDA 242

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           +AE + HP VY+FLH+PVQ+GSDAVL  M REY +++F  V DTL+  VPG+ IATDIIC
Sbjct: 243 VAEAMHHPSVYAFLHIPVQAGSDAVLDRMKREYVVAEFEKVADTLLAKVPGITIATDIIC 302

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           GFPGET ED+ +T+ L ++Y+F ++H+SQFYPRPGTPAARMK+V +  VK+RSRELT+  
Sbjct: 303 GFPGETSEDWEKTMALCRKYEFVELHLSQFYPRPGTPAARMKRVDTKEVKRRSRELTAYI 362

Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHLV 443
           E++ P+  + G  +R+W+T++A D + LV
Sbjct: 363 ESYRPHDALVGTTQRVWVTDVAKDKVSLV 391


>gi|159475142|ref|XP_001695682.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158275693|gb|EDP01469.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 435

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 248/394 (62%), Positives = 313/394 (79%), Gaps = 5/394 (1%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE--ADIWLINTCTVKSPSQS 112
           +PGT+ +++KTFGCSHN SDSEYMAGQLS +GY L +++E   AD+WLIN+CTVK PSQ+
Sbjct: 3   VPGTQAVWVKTFGCSHNISDSEYMAGQLSDYGYRLVEDAERDAADLWLINSCTVKGPSQA 62

Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
            M  LIA  K+  K +VVAGCVPQG + L EL+GVS++GV QIDRVVE VEETL+G+ V 
Sbjct: 63  GMSNLIAAGKAGGKRVVVAGCVPQGDKKLPELQGVSVLGVTQIDRVVEAVEETLRGNTVS 122

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           +L +K LP LDLPKVRRNK +EI+PI+ GCLGACTYCKTKHARGHLGSY   +L  RVR 
Sbjct: 123 MLAKKALPRLDLPKVRRNKHIEIVPISTGCLGACTYCKTKHARGHLGSYDPAALAERVRQ 182

Query: 233 VIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
             AD  V+E+WLSSEDTGAYGRDIG +LP LL+ ++A LPPDG T+LR+GMTNPP++LEH
Sbjct: 183 AAADPWVREIWLSSEDTGAYGRDIGSSLPELLDKLIAVLPPDGRTLLRVGMTNPPYVLEH 242

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           L+ + + LRHPCV+S+LHVPVQS SDAVL AM REYT+++FR V+DTL+  VPGM++ATD
Sbjct: 243 LEALCKALRHPCVFSYLHVPVQSASDAVLEAMKREYTVAEFRRVIDTLLAGVPGMELATD 302

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL 410
           II  FPGE+ ED   T+ L++ Y+FP  HISQFYPRPGTPAARMK K+P+ V K+RSREL
Sbjct: 303 IITAFPGESPEDHAATLELLRTYRFPHTHISQFYPRPGTPAARMKNKIPTQVSKQRSREL 362

Query: 411 TSVFEAFTP-YLGMEGRVERIWITEIAADGIHLV 443
            +  +++   Y  + G V+R  + + AADG+ LV
Sbjct: 363 AAEVDSWADVYQHLVGTVQRAVVVDTAADGVSLV 396


>gi|348685958|gb|EGZ25773.1| hypothetical protein PHYSODRAFT_555473 [Phytophthora sojae]
          Length = 649

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 242/392 (61%), Positives = 312/392 (79%), Gaps = 3/392 (0%)

Query: 53  PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
           P +PG++ I+MKT+GCSHN SDSEYM G L+++GY  T + + A +WL+N+CTVK PSQ+
Sbjct: 56  PSVPGSQLIWMKTYGCSHNVSDSEYMQGVLASYGYRFTQDPDAAQLWLLNSCTVKDPSQA 115

Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
           A   L+ K +   K +VVAGCVPQ  R LK LE VSIVG+QQ+DRVVEVVEETLKGH VR
Sbjct: 116 AFMHLVVKGRKQSKAVVVAGCVPQADRHLKGLEEVSIVGIQQVDRVVEVVEETLKGHTVR 175

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           LL + +LP LDLPK+R+N  VEI+P++ GCLGACTYCKT+HARG LGSYT E++V R +T
Sbjct: 176 LLSKNRLPELDLPKIRKNPMVEIIPLSTGCLGACTYCKTRHARGKLGSYTPEAIVSRAQT 235

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
           VI++GV E+WLSSEDTGAYG DIG +LP LL  ++ E+ PDG  MLR+GMTNPP+IL+HL
Sbjct: 236 VISEGVTEIWLSSEDTGAYGIDIGTDLPTLLRKLL-EVVPDG-VMLRVGMTNPPYILDHL 293

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
             IAEVL+H  VYSFLHVPVQSGSD VL AMNREYT ++FR V D L+  VP + +ATDI
Sbjct: 294 DAIAEVLKHERVYSFLHVPVQSGSDDVLLAMNREYTAAEFRRVADELLAKVPDLTLATDI 353

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
           ICGFP ET+E F++T++L+++Y+F  ++ISQFYPRPGTPAA+MK+VP+ VVK RSR+LT 
Sbjct: 354 ICGFPSETEEHFDETMDLVEKYRFHIMNISQFYPRPGTPAAKMKRVPTQVVKNRSRKLTK 413

Query: 413 VFEAFTPYLGMEGRVERIWI-TEIAADGIHLV 443
           +FE F PY  + G  +++W+ TE++ D  + V
Sbjct: 414 LFETFEPYTHLVGTTQKVWVNTEVSDDKKYTV 445


>gi|424513077|emb|CCO66661.1| predicted protein [Bathycoccus prasinos]
          Length = 614

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 235/389 (60%), Positives = 308/389 (79%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           +PGT+ I++KTFGC+HN SDSE+M+GQL A+GY LTD+  EA++W++NTCTVK+PSQ+AM
Sbjct: 79  VPGTQRIHVKTFGCAHNHSDSEFMSGQLQAYGYKLTDDPSEANLWVVNTCTVKNPSQAAM 138

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
           +T++A+ K+ + P+VV GCVPQG +  KEL  VS++GV QIDR+VE VE TL+G  V +L
Sbjct: 139 NTVLARAKTNEVPVVVCGCVPQGDQKAKELAEVSLLGVSQIDRIVEAVERTLRGERVLML 198

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
            +K LP LDLPKVRRN+ VEI+P++ GCLG CTYCKTKHARG LGSY +E+++GR +  I
Sbjct: 199 EKKSLPKLDLPKVRRNERVEIIPLSTGCLGQCTYCKTKHARGELGSYEIEAIIGRAKLAI 258

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
            +GV E+WLSSEDTGAYG DIG N+  L  A+V  LP D S MLR+GMTNPP+IL HL  
Sbjct: 259 EEGVTEIWLSSEDTGAYGLDIGSNVAELFKALVDVLPADQSVMLRLGMTNPPYILAHLPA 318

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           IAE +RHP V+S++H+PVQSGS  VL  M REYT  +F  V D L+E VP + IATDIIC
Sbjct: 319 IAEAMRHPSVFSWIHIPVQSGSSKVLDDMKREYTREEFEQVCDYLLEHVPDITIATDIIC 378

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           GFPGET+ ++ +T++LI++YKFP+VHISQFY RP TPA RMK+V +  VK RSRELT + 
Sbjct: 379 GFPGETESEWRETMSLIEKYKFPEVHISQFYARPNTPAFRMKRVNTLTVKNRSRELTKLT 438

Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHLV 443
           E++ P+  +EG+  ++WIT+IAADG+ LV
Sbjct: 439 ESYFPWTKLEGQKMKVWITDIAADGVSLV 467


>gi|196007898|ref|XP_002113815.1| hypothetical protein TRIADDRAFT_26388 [Trichoplax adhaerens]
 gi|190584219|gb|EDV24289.1| hypothetical protein TRIADDRAFT_26388 [Trichoplax adhaerens]
          Length = 529

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/456 (54%), Positives = 330/456 (72%), Gaps = 10/456 (2%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDN-HLSKTGSLSPKIPGTE 59
           +EDIEDL++           ++  N V +  + +K + +   N  + +       IPGT+
Sbjct: 10  VEDIEDLISKEESYSVDVRSKISRNNVKLRSRPSKRQGKSDSNVEVDEKAVGDSIIPGTQ 69

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
            IY++T+GCSHN+SD EYMAGQLS++GY +T+  EEAD+WL+N+C VK+P++ +    I 
Sbjct: 70  GIYIRTWGCSHNKSDGEYMAGQLSSYGYKITEIPEEADLWLLNSCAVKNPAEDSFYNDIR 129

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           K K  KK LV+AGCVPQG +    ++G+S+VGVQQIDRVVEVVEETLKGH VRL  +K+ 
Sbjct: 130 KAKELKKYLVLAGCVPQGQKRHPLMDGISVVGVQQIDRVVEVVEETLKGHSVRLFGQKRK 189

Query: 180 PA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
                    L+LPK+R+N  VEI+ IN GCL ACTYCKTKHARG LGSY +E +V R +T
Sbjct: 190 NGKKLGGAPLNLPKIRKNPLVEIIAINTGCLNACTYCKTKHARGDLGSYPIEDIVERAKT 249

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
              +GV E+W++SEDTGAYG DIGV+LP LL  +V ++ PDG+ MLRIGMTNPP+ILEHL
Sbjct: 250 AFNEGVAEIWITSEDTGAYGIDIGVSLPDLLWQLV-KVIPDGA-MLRIGMTNPPYILEHL 307

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
           +E+A++L HP VYSFLHVPVQ+GSD VL  M REYT++DF  VV+ L + VPG+ IATDI
Sbjct: 308 EEMAKILSHPRVYSFLHVPVQAGSDKVLYDMRREYTVTDFEKVVNYLSDKVPGITIATDI 367

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
           ICGFP E  +DF +T+ LI+ +KFP V I+QFYPRPGTPAA+MK++P+  VK RSRELT 
Sbjct: 368 ICGFPTEEKDDFAKTLRLIERHKFPSVFINQFYPRPGTPAAKMKRIPTEEVKNRSRELTQ 427

Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           +F+++ PY    G  +RI ITE++ DG H V   +F
Sbjct: 428 LFKSYRPYDHKLGERQRILITELSHDGNHFVGHNKF 463


>gi|340509229|gb|EGR34782.1| hypothetical protein IMG5_001960 [Ichthyophthirius multifiliis]
          Length = 587

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 237/446 (53%), Positives = 317/446 (71%), Gaps = 16/446 (3%)

Query: 3   DIEDLLAGSG-GGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPK------- 54
           D+EDL+ G+          RL  N +   PK    +     + L  T   S         
Sbjct: 7   DLEDLIQGNELADEYTQNVRLKPNTIKKRPKKQLKQSEQKQDTLEHTADDSEIKFNQSTN 66

Query: 55  ------IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS 108
                 IPG + +Y+KTFGCSHN SDSE+M GQL+ +GY L +N +EADI L+N+CTVK+
Sbjct: 67  TQQNTIIPGIQNVYVKTFGCSHNISDSEFMMGQLAEYGYNLVENEKEADIILVNSCTVKN 126

Query: 109 PSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKG 168
           PSQ A  T++   K   K +VVAGCVPQG R++  LE VS++G+ QIDRVVEV+EETLKG
Sbjct: 127 PSQDAFMTVVKSAKQQNKHIVVAGCVPQGDRNIPGLEDVSVIGISQIDRVVEVIEETLKG 186

Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
           + VRLL +K LP+LDLPK+R+N  +EI+PIN GCLG+CTYCKTKHARG LGSYT+E+++ 
Sbjct: 187 NTVRLLGKKALPSLDLPKIRKNNLIEIIPINTGCLGSCTYCKTKHARGKLGSYTLEAILA 246

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
           R   V  +GVKE+WL+SEDTGAYGRDIG ++  LL  +V +LP D   MLRIGMTNPP+I
Sbjct: 247 RCEQVCEEGVKEIWLTSEDTGAYGRDIGTDISELLKHLVEKLPND--VMLRIGMTNPPYI 304

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           LEH++ I+ +L HP V+SFLH+PVQ+G++ VL  MNREYT  +F  V D L + VP + +
Sbjct: 305 LEHMENISLILNHPRVFSFLHIPVQAGNNTVLENMNREYTREEFEYVCDYLKKNVPNVTL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
           ATDIICGFP ET+  F +T++L+K+Y+FP ++ISQFYPRPGT A +MKKVPS  VK RS+
Sbjct: 365 ATDIICGFPSETNAQFEETISLVKKYEFPIINISQFYPRPGTAAMKMKKVPSIDVKSRSK 424

Query: 409 ELTSVFEAFTPYLGMEGRVERIWITE 434
           ++T VFE+F  +  + G ++++WI +
Sbjct: 425 KITEVFESFHRWDYLVGSIQKVWIND 450


>gi|413918350|gb|AFW58282.1| hypothetical protein ZEAMMB73_571996 [Zea mays]
          Length = 318

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 249/326 (76%), Positives = 279/326 (85%), Gaps = 16/326 (4%)

Query: 1   MEDIEDLLAGSGGGGA--PPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPK---- 54
           MEDIED+L  +G  G   PPG RLP+ AV V PK             S+     P+    
Sbjct: 1   MEDIEDVLGAAGLSGGGAPPGLRLPLAAVAVKPKRRS----------SRVAQAPPQPEAG 50

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T++ E AD+WLINTCTVK+PSQSAM
Sbjct: 51  IPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEDPEGADLWLINTCTVKNPSQSAM 110

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
            TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 111 TTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRLL 170

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
            RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV+
Sbjct: 171 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTVV 230

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
           ++GV+E+WLSSEDTGAYGRDIG NLP LLNAIVAELP D STMLRIGMTNPPFILEHLKE
Sbjct: 231 SEGVREIWLSSEDTGAYGRDIGTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLKE 290

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVL 320
           IA VL HPCVYSFLHVPVQSGSD+VL
Sbjct: 291 IAAVLCHPCVYSFLHVPVQSGSDSVL 316


>gi|348512452|ref|XP_003443757.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
           [Oreochromis niloticus]
          Length = 516

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/455 (54%), Positives = 320/455 (70%), Gaps = 17/455 (3%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           MEDIED+++ S     P           + P+  K K  L D  L +  SL   IPGT+ 
Sbjct: 9   MEDIEDMVSSSD----PTPHERQSARKSIIPRSRKKKELLSDEEL-QADSL---IPGTQK 60

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+MKT+GCSHN SD EYMAGQL+A GY +TD+  EAD+WL+N+CTVK+P++      I K
Sbjct: 61  IWMKTWGCSHNNSDGEYMAGQLAASGYKMTDDPTEADVWLLNSCTVKNPAEDHFRNSIKK 120

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
            +  +K +VVAGCVPQ    +  L+G+SI+GVQQIDRVVEVV+E +KGH VRLL +KK  
Sbjct: 121 AQDQEKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQKKDG 180

Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
                   LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG L SY +E LV R R  
Sbjct: 181 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERARQS 240

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
             +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+P     MLR+GMTNPP+ILEHL+
Sbjct: 241 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIPE--GAMLRLGMTNPPYILEHLE 298

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           E+A++L HP VY+FLHVPVQS SD+VL  M REY + DF+ VVD L E VPG+ IATDII
Sbjct: 299 EMAKILNHPRVYAFLHVPVQSASDSVLMDMKREYCIDDFKRVVDFLKERVPGVTIATDII 358

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFPGET+EDF  T++L+K Y+FP + I+QFYPRPGTPAARM++V + V K+R++EL+ V
Sbjct: 359 CGFPGETEEDFQATIDLVKAYRFPSLFINQFYPRPGTPAARMEQVAAHVKKQRTKELSQV 418

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           F ++ PY    G  + + +TE + D  + V   ++
Sbjct: 419 FHSYNPYDHKVGERQHVLVTEESFDSQYYVAHNKY 453


>gi|363730366|ref|XP_418914.3| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
           [Gallus gallus]
          Length = 582

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/455 (53%), Positives = 324/455 (71%), Gaps = 14/455 (3%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           +EDIED++  S     P  +R     V    +   ++ R   +      S+   IPG + 
Sbjct: 9   LEDIEDIV--SAQDLKPRDWRFVRKNVFPKVRKRSSQQRAQTDDDPPHDSV---IPGIQK 63

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++T+GCSHN SD EYMAGQL+A+GY +TDNS EAD+WL+N+CTVK+P++      I K
Sbjct: 64  IWIRTWGCSHNNSDGEYMAGQLAAYGYKITDNSAEADLWLLNSCTVKNPAEDHFRNSIKK 123

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            + A K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK  
Sbjct: 124 AQEANKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 183

Query: 181 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
                   LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG L SY +E LV R +  
Sbjct: 184 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRAKQS 243

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
             +GV E+WL+SEDTGAYGRDIG +LP LL  +V E  P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 244 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EAIPEGA-MLRLGMTNPPYILEHLE 301

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DFR VVD L E VPG+ IATDII
Sbjct: 302 EMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFRRVVDFLKEKVPGITIATDII 361

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFPGETDEDF +T+ L+++YKFP + I+QFYPRPGTPAA+M +VP+AV K+R+++L+ +
Sbjct: 362 CGFPGETDEDFQETMKLVEQYKFPSLFINQFYPRPGTPAAKMHQVPAAVKKQRTKDLSQL 421

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           F ++ PY    G  +R+ +TE + D  + V    F
Sbjct: 422 FHSYNPYDHKVGERQRVLVTEESFDSNYYVAHNPF 456


>gi|403368709|gb|EJY84195.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
           [Oxytricha trifallax]
          Length = 642

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 229/400 (57%), Positives = 304/400 (76%), Gaps = 8/400 (2%)

Query: 36  NKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
           N  +  +N   +    + K+PG + I++KT+GCSHN SDSEYMAG L+ +GY + DN +E
Sbjct: 71  NAQKFQNNVQDQPFEQNEKVPGAQKIFVKTYGCSHNISDSEYMAGLLAEYGYQIVDNMDE 130

Query: 96  ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQI 155
           AD  L+N+CTVK+PSQ     L+   K  KKP++V+GCVPQG R++K LE VS++G+ QI
Sbjct: 131 ADACLLNSCTVKNPSQEKFVNLVLSAKGKKKPVIVSGCVPQGDRNIKGLEDVSVIGITQI 190

Query: 156 DRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 215
           DRVVEVVEE LKGH V+LL +K LP LDLPK+R+N+ VEI+P++ GCLG+CTYCKT+HAR
Sbjct: 191 DRVVEVVEEALKGHNVKLLAKKDLPILDLPKIRKNQLVEIIPLSTGCLGSCTYCKTRHAR 250

Query: 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275
           G LGSY   ++V R RT I +GV E+WL+SEDTGAYGRDIG +LP LL +++A +P    
Sbjct: 251 GKLGSYDPNAIVERARTAIEEGVMEIWLTSEDTGAYGRDIGTSLPELLKSLIAVMPK--H 308

Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
           TMLR+GMTNPP+ILEHL+ +A++L HP VYSFLHVPVQ+ S++VL  MNREY + +F  V
Sbjct: 309 TMLRVGMTNPPYILEHLQAMADILNHPRVYSFLHVPVQAASNSVLDKMNREYLIEEFEEV 368

Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395
            D L+E V  M +ATDIICGFP ET+ DF++T+ L+ +YKFP ++ISQFYPRPGT AA+ 
Sbjct: 369 CDFLVENVKDMTLATDIICGFPTETEADFDETLKLVGKYKFPVLNISQFYPRPGTVAAKW 428

Query: 396 KKVPSAVVKKRSRELTSVFEAFTP---YLGMEGRVERIWI 432
           KKVPS  VKKRS +LT +F+++T    Y+G E   + +WI
Sbjct: 429 KKVPSQDVKKRSNDLTKLFDSYTTNNHYIGTE---QLVWI 465


>gi|403375394|gb|EJY87671.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
           [Oxytricha trifallax]
          Length = 644

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 229/400 (57%), Positives = 304/400 (76%), Gaps = 8/400 (2%)

Query: 36  NKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
           N  +  +N   +    + K+PG + I++KT+GCSHN SDSEYMAG L+ +GY + DN +E
Sbjct: 73  NAQKFQNNIQDQPFEQNEKVPGAQKIFVKTYGCSHNISDSEYMAGLLAEYGYQIVDNMDE 132

Query: 96  ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQI 155
           AD  L+N+CTVK+PSQ     L+   K  KKP++V+GCVPQG R++K LE VS++G+ QI
Sbjct: 133 ADACLLNSCTVKNPSQEKFVNLVLSAKGKKKPVIVSGCVPQGDRNIKGLEDVSVIGITQI 192

Query: 156 DRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 215
           DRVVEVVEE LKGH V+LL +K LP LDLPK+R+N+ VEI+P++ GCLG+CTYCKT+HAR
Sbjct: 193 DRVVEVVEEALKGHNVKLLAKKDLPILDLPKIRKNQLVEIIPLSTGCLGSCTYCKTRHAR 252

Query: 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275
           G LGSY   ++V R RT I +GV E+WL+SEDTGAYGRDIG +LP LL +++A +P    
Sbjct: 253 GKLGSYDPNAIVERARTAIEEGVMEIWLTSEDTGAYGRDIGTSLPELLKSLIAVMPK--H 310

Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
           TMLR+GMTNPP+ILEHL+ +A++L HP VYSFLHVPVQ+ S++VL  MNREY + +F  V
Sbjct: 311 TMLRVGMTNPPYILEHLQAMADILNHPRVYSFLHVPVQAASNSVLDKMNREYLIEEFEEV 370

Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395
            D L+E V  M +ATDIICGFP ET+ DF++T+ L+ +YKFP ++ISQFYPRPGT AA+ 
Sbjct: 371 CDFLVENVKDMTLATDIICGFPTETEADFDETLKLVGKYKFPVLNISQFYPRPGTVAAKW 430

Query: 396 KKVPSAVVKKRSRELTSVFEAFTP---YLGMEGRVERIWI 432
           KKVPS  VKKRS +LT +F+++T    Y+G E   + +WI
Sbjct: 431 KKVPSQDVKKRSNDLTKLFDSYTTNNHYIGTE---QLVWI 467


>gi|403356675|gb|EJY77936.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
           [Oxytricha trifallax]
          Length = 644

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 228/400 (57%), Positives = 304/400 (76%), Gaps = 8/400 (2%)

Query: 36  NKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
           N  +  +N   +    + K+PG + +++KT+GCSHN SDSEYMAG L+ +GY + DN +E
Sbjct: 73  NAQKFQNNIQDQPFEQNEKVPGAQKVFVKTYGCSHNISDSEYMAGLLAEYGYQIVDNMDE 132

Query: 96  ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQI 155
           AD  L+N+CTVK+PSQ     L+   K  KKP++V+GCVPQG R++K LE VS++G+ QI
Sbjct: 133 ADACLLNSCTVKNPSQEKFVNLVLSAKGKKKPVIVSGCVPQGDRNIKGLEDVSVIGITQI 192

Query: 156 DRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 215
           DRVVEVVEE LKGH V+LL +K LP LDLPK+R+N+ VEI+P++ GCLG+CTYCKT+HAR
Sbjct: 193 DRVVEVVEEALKGHNVKLLAKKDLPILDLPKIRKNQLVEIIPLSTGCLGSCTYCKTRHAR 252

Query: 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275
           G LGSY   ++V R RT I +GV E+WL+SEDTGAYGRDIG +LP LL +++A +P    
Sbjct: 253 GKLGSYDPNAIVERARTAIEEGVMEIWLTSEDTGAYGRDIGTSLPELLKSLIAVMPK--H 310

Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
           TMLR+GMTNPP+ILEHL+ +A++L HP VYSFLHVPVQ+ S++VL  MNREY + +F  V
Sbjct: 311 TMLRVGMTNPPYILEHLQAMADILNHPRVYSFLHVPVQAASNSVLDKMNREYLIEEFEEV 370

Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395
            D L+E V  M +ATDIICGFP ET+ DF++T+ L+ +YKFP ++ISQFYPRPGT AA+ 
Sbjct: 371 CDFLVENVKDMTLATDIICGFPTETEADFDETLKLVGKYKFPVLNISQFYPRPGTVAAKW 430

Query: 396 KKVPSAVVKKRSRELTSVFEAFTP---YLGMEGRVERIWI 432
           KKVPS  VKKRS +LT +F+++T    Y+G E   + +WI
Sbjct: 431 KKVPSQDVKKRSNDLTKLFDSYTTNNHYIGTE---QLVWI 467


>gi|45361233|ref|NP_989194.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Xenopus
           (Silurana) tropicalis]
 gi|82186429|sp|Q6P4Y0.1|CDKAL_XENTR RecName: Full=Threonylcarbamoyladenosine tRNA
           methylthiotransferase; AltName: Full=CDK5 regulatory
           subunit-associated protein 1-like 1; AltName:
           Full=tRNA-t(6)A37 methylthiotransferase
 gi|38649005|gb|AAH63205.1| CDK5 regulatory subunit associated protein 1-like 1 [Xenopus
           (Silurana) tropicalis]
          Length = 553

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 245/457 (53%), Positives = 329/457 (71%), Gaps = 20/457 (4%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPI--NAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT 58
           ++DIED+++ +      P  R     N V    K NKNK +  +     T      IPGT
Sbjct: 9   LDDIEDIVSATD---PKPHDRQNARQNIVPRARKRNKNKIQEEEPPADST------IPGT 59

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           + I+++T+GCSHN SD EYMAGQL+A+GY++T+  E+AD+WL+N+CTVKSP++      I
Sbjct: 60  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEQADLWLLNSCTVKSPAEDHFRNSI 119

Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
            K + A K +V++GCVPQ     + ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 120 KKAQEANKKVVLSGCVPQAQPRQEYMKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKK 179

Query: 179 LPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                     LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG L SY VE LV R  
Sbjct: 180 DNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYPVEELVDRAA 239

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
               +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+ILEH
Sbjct: 240 QSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEH 297

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           L+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ IATD
Sbjct: 298 LEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCIADFKRVVDFLKERVPGITIATD 357

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
           IICGFPGETDEDF +T+ L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R++EL+
Sbjct: 358 IICGFPGETDEDFKETLKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAHVKKQRTKELS 417

Query: 412 SVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
            +F +++PY    G  + + +TE + D  + V   +F
Sbjct: 418 QLFHSYSPYDHKIGEEQHVLVTEESFDSQYYVSHNRF 454


>gi|387015104|gb|AFJ49671.1| CDK5 regulatory subunit associated protein 1-like 1 [Crotalus
           adamanteus]
          Length = 577

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 240/455 (52%), Positives = 324/455 (71%), Gaps = 14/455 (3%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           +EDIED+++       P  F    N   + PK  K + +  +  +         IPG + 
Sbjct: 9   LEDIEDIVSAED----PKPFDRQFNRKNIIPKVRKRQSQ-KNVEVDDPPPRDSVIPGIQK 63

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++T+GCSHN SD EYMAGQL+A+GY++T+N+ EAD+WL+N+CTVKSP++      I K
Sbjct: 64  IWIRTWGCSHNSSDGEYMAGQLAAYGYSITENAAEADLWLLNSCTVKSPAEDHFRNSIKK 123

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            +  KK +V+AGCVPQ       L G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK  
Sbjct: 124 AQEGKKKIVLAGCVPQAQPRQDYLHGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 183

Query: 181 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
                   LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG L SY++E LV R +  
Sbjct: 184 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYSIEELVNRGKQS 243

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
             +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 244 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 301

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           E+A++L HP VY+FLHVPVQS SD+VL  M REY ++DF+ VVD L   VPG+ +ATDII
Sbjct: 302 EMAKILNHPRVYAFLHVPVQSASDSVLMDMKREYCVADFKHVVDFLKTKVPGITVATDII 361

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFPGETDEDF +T+ L++EY+FP + I+QFYPRPGTPAA+M +VP+ + K+R++EL+ +
Sbjct: 362 CGFPGETDEDFQETMKLVEEYRFPSLFINQFYPRPGTPAAKMPQVPAQIKKQRTKELSKL 421

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           F ++ PY    G  +++ +TE + D    V   +F
Sbjct: 422 FHSYNPYDHKIGERQKVLVTEESFDSKFYVAHNKF 456


>gi|301111844|ref|XP_002905001.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
           infestans T30-4]
 gi|262095331|gb|EEY53383.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
           infestans T30-4]
          Length = 624

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 238/392 (60%), Positives = 303/392 (77%), Gaps = 3/392 (0%)

Query: 53  PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
           P +PGT+ I++KT+GCSHN SDSEYM G L+++GY  T + + A +WL+N+CTVK PSQ+
Sbjct: 55  PSVPGTQLIWIKTYGCSHNVSDSEYMQGVLASYGYRFTQDPDAAQLWLLNSCTVKDPSQA 114

Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
           A   L  K +   K +VVAGCVPQ  R LK LE VSIVG+QQ+DRVVEVVEETLKGH VR
Sbjct: 115 AFMHLAVKGRKQNKAVVVAGCVPQADRHLKGLEEVSIVGIQQVDRVVEVVEETLKGHTVR 174

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           LL + +LP LDLPK+R+N  VEI+P++ GCLGACTYCKT+HARG LGSYT E++V R +T
Sbjct: 175 LLAKNRLPELDLPKIRKNPMVEIIPLSTGCLGACTYCKTRHARGKLGSYTPEAIVSRAQT 234

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
           VI +GV E+WLSSEDTGAYG DIG +LP L+  ++ E+ PDG  MLR+GMTNPP+IL+HL
Sbjct: 235 VINEGVTEIWLSSEDTGAYGIDIGTDLPTLMRKLL-EVVPDG-IMLRVGMTNPPYILDHL 292

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
             IAEVL H  VYSFLHVPVQSGSD VL AMNREYT  +FR V D L+  VP + +ATDI
Sbjct: 293 DAIAEVLNHERVYSFLHVPVQSGSDDVLLAMNREYTAGEFRRVADELLAKVPDLTLATDI 352

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
           ICGFP ET+E F++T+ L+ +Y+F  ++ISQFYPRPGTPAA+MK+V + +VK RSR+LT 
Sbjct: 353 ICGFPTETEEHFDETMELVDKYRFHIMNISQFYPRPGTPAAKMKRVSTQIVKNRSRKLTK 412

Query: 413 VFEAFTPYLGMEGRVERIWI-TEIAADGIHLV 443
           +FE F PY  +     ++W+ TE++ D  + V
Sbjct: 413 LFETFEPYTRLVDTTLKVWVNTEVSDDKKYTV 444


>gi|332228849|ref|XP_003263603.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
           [Nomascus leucogenys]
          Length = 536

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 239/455 (52%), Positives = 326/455 (71%), Gaps = 13/455 (2%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           ++DIED+++      + P  R  +    V PK  +   + +      +      IPG + 
Sbjct: 10  LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++      I K
Sbjct: 66  IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK  
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185

Query: 181 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
                   LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +  
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
             +GV E+WL+SEDTGAYGRDIG NLP LL  +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           F +++PY    G  +++ +TE + D    V   QF
Sbjct: 424 FHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQF 458


>gi|114605652|ref|XP_001171194.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
           isoform 4 [Pan troglodytes]
          Length = 536

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 239/455 (52%), Positives = 326/455 (71%), Gaps = 13/455 (2%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           ++DIED+++      + P  R  +    V PK  +   + +      +      IPG + 
Sbjct: 10  LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++      I K
Sbjct: 66  IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK  
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185

Query: 181 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
                   LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +  
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
             +GV E+WL+SEDTGAYGRDIG NLP LL  +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           F +++PY    G  +++ +TE + D    V   QF
Sbjct: 424 FHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQF 458


>gi|93277076|ref|NP_060244.2| threonylcarbamoyladenosine tRNA methylthiotransferase [Homo
           sapiens]
 gi|74747199|sp|Q5VV42.1|CDKAL_HUMAN RecName: Full=Threonylcarbamoyladenosine tRNA
           methylthiotransferase; AltName: Full=CDK5 regulatory
           subunit-associated protein 1-like 1; AltName:
           Full=tRNA-t(6)A37 methylthiotransferase
 gi|111309189|gb|AAI21021.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|111309398|gb|AAI21022.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
 gi|119575830|gb|EAW55426.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_b
           [Homo sapiens]
 gi|158256902|dbj|BAF84424.1| unnamed protein product [Homo sapiens]
          Length = 579

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 239/455 (52%), Positives = 326/455 (71%), Gaps = 13/455 (2%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           ++DIED+++      + P  R  +    V PK  +   + +      +      IPG + 
Sbjct: 10  LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++      I K
Sbjct: 66  IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK  
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185

Query: 181 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
                   LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +  
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
             +GV E+WL+SEDTGAYGRDIG NLP LL  +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           F +++PY    G  +++ +TE + D    V   QF
Sbjct: 424 FHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQF 458


>gi|397505362|ref|XP_003823235.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
           [Pan paniscus]
 gi|410220836|gb|JAA07637.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
           troglodytes]
 gi|410329393|gb|JAA33643.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
           troglodytes]
          Length = 579

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 239/455 (52%), Positives = 326/455 (71%), Gaps = 13/455 (2%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           ++DIED+++      + P  R  +    V PK  +   + +      +      IPG + 
Sbjct: 10  LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++      I K
Sbjct: 66  IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK  
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185

Query: 181 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
                   LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +  
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
             +GV E+WL+SEDTGAYGRDIG NLP LL  +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           F +++PY    G  +++ +TE + D    V   QF
Sbjct: 424 FHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQF 458


>gi|224045698|ref|XP_002191115.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
           [Taeniopygia guttata]
          Length = 582

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 232/401 (57%), Positives = 306/401 (76%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +TDNS EAD+WL+N+CTVK+P++   
Sbjct: 58  IPGVQKIWIRTWGCSHNNSDGEYMAGQLAAYGYTITDNSAEADLWLLNSCTVKNPAEDHF 117

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +  KK +V+AGCVPQ     + L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 118 RNSIKKAQEGKKKVVLAGCVPQAQPRQEYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 177

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG L SY +E LV
Sbjct: 178 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELV 237

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 238 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPKLLWKLV-EVIPEGA-MLRLGMTNPPY 295

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 296 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKQVVDFLKEKVPGIT 355

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETDEDF +T+ L++ Y+FP + I+QFYPRPGTPAA+M +VP+AV K+R+
Sbjct: 356 IATDIICGFPGETDEDFQETMKLVELYRFPSLFINQFYPRPGTPAAKMPQVPAAVKKQRT 415

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ +F +++PY    G  +R+ +TE + D  + V    F
Sbjct: 416 KDLSQLFHSYSPYDHKVGERQRVLVTEESFDSNYYVAHNPF 456


>gi|432112178|gb|ELK35117.1| CDK5 regulatory subunit-associated protein 1-like 1 [Myotis
           davidii]
          Length = 572

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 230/401 (57%), Positives = 307/401 (76%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I + +   K +V+AGCVPQ       L+G+S++GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKRAQEENKKIVLAGCVPQAQPRQDYLQGLSVIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A+VL HP VY+FLH+PVQS SDAVL AM REY ++DFR VVD L E VPG+ 
Sbjct: 297 ILEHLEEMAKVLNHPRVYAFLHIPVQSASDAVLMAMKREYCVADFRRVVDFLKEKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 416

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ VF +++PY    G  +++ +TE + D    V   +F
Sbjct: 417 KDLSRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNRF 457


>gi|410252052|gb|JAA13993.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
           troglodytes]
 gi|410291158|gb|JAA24179.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
           troglodytes]
 gi|410291160|gb|JAA24180.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
           troglodytes]
          Length = 579

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 238/455 (52%), Positives = 325/455 (71%), Gaps = 13/455 (2%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           ++DIED+++      + P  R  +    V PK  +   + +      +      IPG + 
Sbjct: 10  LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++      I K
Sbjct: 66  IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK  
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185

Query: 181 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
                   LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +  
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
             +GV E+WL+SEDTGAYGRDIG NLP LL  +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           F +++PY       +++ +TE + D    V   QF
Sbjct: 424 FHSYSPYDHKIDERQQVLVTEESFDSKFYVAHNQF 458


>gi|156382226|ref|XP_001632455.1| predicted protein [Nematostella vectensis]
 gi|156219511|gb|EDO40392.1| predicted protein [Nematostella vectensis]
          Length = 555

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 232/396 (58%), Positives = 300/396 (75%), Gaps = 9/396 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT+TIY++T+GCSHN SDSEYMAGQL+A+GY +TD+ + AD+WL+N+CTVKSP++   
Sbjct: 58  IPGTQTIYVRTWGCSHNNSDSEYMAGQLAAYGYKITDDEQCADLWLLNSCTVKSPAEDGF 117

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K K+  K LVVAGCVPQG      ++G+S+VGVQQIDRVVEVVEETLKGH VRL 
Sbjct: 118 RNAIKKAKAQGKHLVVAGCVPQGQPRHDTVKGISVVGVQQIDRVVEVVEETLKGHTVRLF 177

Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK         +LDLPK+R+N  VEI+ IN GCL  CTYCKTKHARG LGSY  E +V
Sbjct: 178 GQKKADGKKTGGASLDLPKIRKNPLVEIIAINTGCLNQCTYCKTKHARGDLGSYPPEEIV 237

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYG+DIGV LP LL  +V  +P  G   +RIGMTNPP+
Sbjct: 238 NRAKQAFNEGVVEMWLTSEDTGAYGKDIGVTLPELLWQLVKVIPEGGR--MRIGMTNPPY 295

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VYSFLHVPVQS S  VL+ M REY   DF  VV+ L + VP + 
Sbjct: 296 ILEHLEEMAKILNHPRVYSFLHVPVQSASTNVLADMKREYIAEDFEHVVNYLRQRVPDLT 355

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATD+ICGFP ET++DF +T++L+K+YKFP + I+QFYPRPGTPAARMK++P+  VK+R+
Sbjct: 356 IATDLICGFPTETEDDFQKTLDLVKKYKFPSLFINQFYPRPGTPAARMKRLPTEEVKRRT 415

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           RE++ +F+++T Y    G V+ + +TE + DG+H V
Sbjct: 416 REVSKLFQSYTTYDHKVGAVQEVLVTEESHDGVHYV 451


>gi|7020375|dbj|BAA91102.1| unnamed protein product [Homo sapiens]
          Length = 579

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 238/455 (52%), Positives = 326/455 (71%), Gaps = 13/455 (2%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           ++DIED+++      + P  R  +    V PK  +   + +      +      IPG + 
Sbjct: 10  LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++      I K
Sbjct: 66  IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK  
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185

Query: 181 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
                   LDLPK+R+N  +EI+ I+ GCL ACTYCKTKHARG+L SY ++ LV R +  
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISISTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
             +GV E+WL+SEDTGAYGRDIG NLP LL  +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           F +++PY    G  +++ +TE + D    V   QF
Sbjct: 424 FHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQF 458


>gi|355748266|gb|EHH52749.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
           fascicularis]
          Length = 576

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 229/401 (57%), Positives = 306/401 (76%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 60  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 179

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 GQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 239

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG NLP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 357

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 358 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 417

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ VF +++PY    G  +++ +TE + D    V   +F
Sbjct: 418 KDLSRVFHSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRF 458


>gi|380814044|gb|AFE78896.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
           mulatta]
 gi|383419475|gb|AFH32951.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
           mulatta]
 gi|384947864|gb|AFI37537.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
           mulatta]
          Length = 576

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 229/401 (57%), Positives = 306/401 (76%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 60  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 179

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 GQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 239

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG NLP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 357

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 358 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 417

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ VF +++PY    G  +++ +TE + D    V   +F
Sbjct: 418 KDLSRVFHSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRF 458


>gi|383859676|ref|XP_003705318.1| PREDICTED: CDKAL1-like protein-like [Megachile rotundata]
          Length = 540

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/455 (53%), Positives = 323/455 (70%), Gaps = 16/455 (3%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           +EDIEDL+  S     P         + V  K N+ +       L +    +  +PGT+T
Sbjct: 9   IEDIEDLI--SSQDITPKERYSSRKNITVRSKRNQLR-----EELPQPPVFNSIVPGTQT 61

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY+KT+GC+HN SDSEYMAGQL+A+GY LT++  +AD+WL+N+CTVKSP++      I  
Sbjct: 62  IYVKTWGCTHNSSDSEYMAGQLAAYGYRLTEDKSKADLWLLNSCTVKSPAEDHFRNEIEA 121

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            +   K +VVAGCVPQG+     L+G+S++GVQQIDRVVEVVEETLKG+ VR L +KK  
Sbjct: 122 GRKQGKHIVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNSVRFLQQKKEA 181

Query: 181 -------ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
                  +L LPKVRRN  +EI+ IN GCL  CTYCKTKHARG LGSY  E +V R +  
Sbjct: 182 GKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERAKQA 241

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
             +GV E+WL+SEDTG YGRDIG +LP LL  ++ E+ PDG  M+R+GMTNPP+ILEHL+
Sbjct: 242 FEEGVCELWLTSEDTGTYGRDIGTSLPELLWKLI-EVVPDGC-MIRVGMTNPPYILEHLE 299

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           E++++LRHP VYSFLHVPVQSGSD VL+ M REYT +DF  VV+ L E VPG+ IATDII
Sbjct: 300 EMSKILRHPKVYSFLHVPVQSGSDQVLADMKREYTCADFEMVVNFLRERVPGLTIATDII 359

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFP ET++DF +T+ L ++YKFP + I+QF+PRPGTPAARM+KVP+  VKKR++ L+  
Sbjct: 360 CGFPTETEKDFEETMKLCEKYKFPSLFINQFFPRPGTPAARMQKVPTQDVKKRTKRLSEF 419

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           F++++PY    G ++ + +TE++ D  H V   +F
Sbjct: 420 FQSYSPYDNRVGLIQDVLVTEVSHDKKHYVAHNKF 454


>gi|109069747|ref|XP_001098819.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
           isoform 3 [Macaca mulatta]
          Length = 576

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 229/401 (57%), Positives = 306/401 (76%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 60  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 179

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 GQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 239

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG NLP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 357

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 358 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 417

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ VF +++PY    G  +++ +TE + D    V   +F
Sbjct: 418 KDLSWVFHSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRF 458


>gi|426250880|ref|XP_004019161.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
           isoform 1 [Ovis aries]
 gi|426250882|ref|XP_004019162.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
           isoform 2 [Ovis aries]
 gi|426250884|ref|XP_004019163.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
           isoform 3 [Ovis aries]
          Length = 578

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 228/401 (56%), Positives = 307/401 (76%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SDAVL  M REY ++DF+ VVD L + VPG+ 
Sbjct: 297 ILEHLEEMAKILHHPRVYAFLHIPVQSASDAVLMEMKREYCVADFKRVVDFLKDKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 416

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           +EL+ +F +++PY    G+ +++ +TE + D    V   +F
Sbjct: 417 KELSRIFHSYSPYDHKIGQRQQVLVTEESFDSKFYVAHNRF 457


>gi|402783747|dbj|BAM37953.1| CDK5 regulatory subunit-associated protein 1-like 1 [Felis catus]
          Length = 576

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 228/401 (56%), Positives = 304/401 (75%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+M+T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKNNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG NLP LL  +V E+ P G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPRGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL+ M REY ++DF+ VVD L E VPG+ 
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLTEMRREYCVADFKRVVDFLKEKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           +ATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M ++P+ V K+R+
Sbjct: 357 LATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMAQIPAQVKKQRT 416

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ VF ++ PY    G  +++ +TE + D    V   +F
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRF 457


>gi|410958374|ref|XP_003985794.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
           [Felis catus]
          Length = 576

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 228/401 (56%), Positives = 304/401 (75%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+M+T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKNNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG NLP LL  +V E+ P G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPRGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL+ M REY ++DF+ VVD L E VPG+ 
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLTEMRREYCVADFKRVVDFLKEKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           +ATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M ++P+ V K+R+
Sbjct: 357 LATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMAQIPAQVKKQRT 416

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ VF ++ PY    G  +++ +TE + D    V   +F
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRF 457


>gi|147902192|ref|NP_001084956.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Xenopus
           laevis]
 gi|82185344|sp|Q6NS26.1|CDKAL_XENLA RecName: Full=Threonylcarbamoyladenosine tRNA
           methylthiotransferase; AltName: Full=CDK5 regulatory
           subunit-associated protein 1-like 1; AltName:
           Full=tRNA-t(6)A37 methylthiotransferase
 gi|47122802|gb|AAH70521.1| MGC78779 protein [Xenopus laevis]
          Length = 556

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/457 (53%), Positives = 327/457 (71%), Gaps = 20/457 (4%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPI--NAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT 58
           ++DIED+++ +      P  R     N V    K NKN  +  +     T      IPGT
Sbjct: 9   LDDIEDMVSATD---PKPHDRQSARKNIVPRARKRNKNNIQEEEPPADST------IPGT 59

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           + I+++T+GCSHN SD EYMAGQL+A+GY++T+  E+AD+WL+N+CTVKSP++      I
Sbjct: 60  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEKADLWLLNSCTVKSPAEDHFRNSI 119

Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
            K + A K +VV+GCVPQ       ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 120 KKAQEANKKVVVSGCVPQAQPRQDYMKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKK 179

Query: 179 LPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                     LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG L SY VE LV R  
Sbjct: 180 DNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYPVEELVDRAT 239

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
               +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+ILEH
Sbjct: 240 QSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEH 297

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           L+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ IATD
Sbjct: 298 LEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCIADFKRVVDFLKERVPGITIATD 357

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
           IICGFPGETDEDF +T+ L++EYKFP + I+QFYPRPGTPAA+M++V + V K+R++EL+
Sbjct: 358 IICGFPGETDEDFKETLKLVEEYKFPSLFINQFYPRPGTPAAKMEQVLAHVKKRRTKELS 417

Query: 412 SVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
            +F ++ PY    G+ +++ +TE + D  + V   +F
Sbjct: 418 QLFHSYDPYDHKIGQKQQVLVTEESFDSQYYVAHNRF 454


>gi|410905177|ref|XP_003966068.1| PREDICTED: threonylcarbamoyladenosine tRNA
           methylthiotransferase-like [Takifugu rubripes]
          Length = 613

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 230/401 (57%), Positives = 302/401 (75%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT+ I+MKT+GCSHN SD EYMAGQL+A GY +TD+  EAD+WL+N+CTVK+P++   
Sbjct: 53  IPGTQKIWMKTWGCSHNNSDGEYMAGQLAASGYKITDDPIEADLWLLNSCTVKNPAEDHF 112

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +  +K +VVAGCVPQ    +  L+G+SI+GVQQIDRVVEVV+E +KGH VRLL
Sbjct: 113 RNSIKKAQEQQKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLL 172

Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG L SY +E LV
Sbjct: 173 GQKKDGGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELV 232

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R R    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+P     MLR+GMTNPP+
Sbjct: 233 ERTRQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIPE--GAMLRLGMTNPPY 290

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLHVPVQS SD+VL  M REY + DF+ VVD L E VPG+ 
Sbjct: 291 ILEHLEEMAKILSHPRVYAFLHVPVQSASDSVLMDMKREYCVGDFKRVVDFLKERVPGVT 350

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGET+EDF +T++L+K Y+FP + I+QFYPRPGTPAA+M+++P+ + K+R+
Sbjct: 351 IATDIICGFPGETEEDFQETLDLVKLYQFPSLFINQFYPRPGTPAAKMEQIPAHIKKQRT 410

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           +EL+ +F ++ PY    G  +++ +TE + DG + V   +F
Sbjct: 411 KELSQLFHSYHPYDHKVGERQQVLVTEESFDGQYYVAHNKF 451


>gi|403270819|ref|XP_003927359.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
           [Saimiri boliviensis boliviensis]
          Length = 578

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 228/401 (56%), Positives = 306/401 (76%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYLIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG NLP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA++++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKIEQVPAQVKKQRT 416

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ VF +++PY    G  +++ +TE + D    V   +F
Sbjct: 417 KDLSRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNRF 457


>gi|340371624|ref|XP_003384345.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
           [Amphimedon queenslandica]
          Length = 550

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 234/396 (59%), Positives = 301/396 (76%), Gaps = 9/396 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG+++IY+KT+GCSHN SD EYMAG L+A GY +TD+  +A +WL+N+CTVK PS+   
Sbjct: 63  IPGSQSIYIKTWGCSHNTSDGEYMAGLLAAEGYTITDSPLDAHVWLLNSCTVKGPSEDGF 122

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
            + I K K   K LVVAGCVPQG +DL E++ +S VGV+QIDR+VEVVE  LKG  VRL 
Sbjct: 123 KSAIKKGKELNKTLVVAGCVPQGQKDLDEIKDISAVGVKQIDRIVEVVEGALKGGTVRLF 182

Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
             K+        P+L+LPK+R+N  VEI+PIN GCL  CTYCKTKH+RG+L SY  + ++
Sbjct: 183 GTKRGSGRQLAGPSLELPKIRKNPLVEIIPINSGCLNHCTYCKTKHSRGNLASYYPQEII 242

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R      +GV E+WL+SEDTGAYGRDIGV LP LL  +V E+ P+GS MLRIGMTNPP+
Sbjct: 243 SRATQAFEEGVVEIWLTSEDTGAYGRDIGVTLPELLWQLV-EVMPEGS-MLRIGMTNPPY 300

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           I+EHL+E+A++L HP VYSFLHVPVQSGSDAVL  M REYT+  FR VVD L E VPG+ 
Sbjct: 301 IMEHLEEMAKILSHPRVYSFLHVPVQSGSDAVLGEMKREYTIKQFRKVVDYLKEQVPGVT 360

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATD+ICGFP ET+EDF++T++L+ EYKFP + I+QFYPRPGTPAA+MK++P+  VK RS
Sbjct: 361 IATDVICGFPTETEEDFSETLSLVNEYKFPSLFINQFYPRPGTPAAKMKRIPTNEVKNRS 420

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           R+LT +F ++TPY    G +E I +TE++ D  + V
Sbjct: 421 RKLTELFHSYTPYSKRVGGIETILVTEMSHDKRYYV 456


>gi|395830637|ref|XP_003788426.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
           [Otolemur garnettii]
          Length = 583

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 228/401 (56%), Positives = 305/401 (76%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYTITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG NLP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRVGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMRREYCVADFKRVVDFLKEKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA++++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKIEQVPAQVKKQRT 416

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ VF ++ PY    G  +++ +TE + D    V   +F
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRF 457


>gi|291395737|ref|XP_002714277.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
           [Oryctolagus cuniculus]
          Length = 571

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 226/401 (56%), Positives = 307/401 (76%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+S++GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSVIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKENGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V ++ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-DVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL AM REY ++DF++VVD L E VPG+ 
Sbjct: 297 ILEHLQEMAKILNHPRVYAFLHIPVQSASDSVLMAMKREYCVADFKSVVDFLKEKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ + K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAHMKKQRT 416

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ VF ++ PY    G  +++ +TE + D    V   +F
Sbjct: 417 KDLSQVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRF 457


>gi|300794023|ref|NP_001179620.1| CDK5 regulatory subunit-associated protein 1-like 1 [Bos taurus]
 gi|296474090|tpg|DAA16205.1| TPA: CDK5 regulatory subunit associated protein 1-like 1 [Bos
           taurus]
          Length = 578

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 227/401 (56%), Positives = 305/401 (76%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD VL  M REY ++DF+ VVD L + VPG+ 
Sbjct: 297 ILEHLEEMAKILHHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKDKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 416

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           +EL+ +F ++ PY    G+ +++ +TE + D    V   +F
Sbjct: 417 KELSRIFHSYNPYDHKIGQRQQVLVTEESFDSKFYVAHNRF 457


>gi|74003946|ref|XP_849433.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
           isoform 3 [Canis lupus familiaris]
 gi|402783749|dbj|BAM37954.1| CDK5 regulatory subunit-associated protein 1-like 1 [Canis lupus
           familiaris]
          Length = 578

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 227/401 (56%), Positives = 302/401 (75%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+M+T+GCSHN SD EYMAGQL+A+GY +T+N+ EAD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASEADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ        +G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYFKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ +N GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKANGKRLGGARLDLPKIRKNPLIEIISVNTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG NLP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           +ATDIICGFPGETD+DF +TV L+++YKFP + I+QFYPRPGTPAA+M +VP+ V K+R+
Sbjct: 357 LATDIICGFPGETDQDFQETVKLVEDYKFPSLFINQFYPRPGTPAAKMVQVPAQVKKQRT 416

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ VF ++ PY    G  +++ +TE + D    V   +F
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRF 457


>gi|149731822|ref|XP_001494687.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
           [Equus caballus]
          Length = 578

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 228/401 (56%), Positives = 304/401 (75%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGET+EDF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETNEDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 416

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ VF ++ PY    G  +++ +TE + D    V   +F
Sbjct: 417 KDLSRVFHSYNPYDHKVGERQQVLVTEESFDSKFYVAHNRF 457


>gi|350586429|ref|XP_003128247.3| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1 [Sus
           scrofa]
          Length = 578

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 237/455 (52%), Positives = 322/455 (70%), Gaps = 14/455 (3%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           ++DIED++  S     P         V    +    +  L D +   + S    IPG + 
Sbjct: 10  LDDIEDIV--SQEDSKPQDRHFARKQVVPKVRRRNTQKYLQDENSPPSDST---IPGIQK 64

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++      I K
Sbjct: 65  IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK  
Sbjct: 125 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184

Query: 181 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
                   LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +  
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 244

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
             +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           E+A++L HP VY+FLH+PVQS SD VL  M REY ++DF+ VVD L + VPG+ IATDII
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDTVLMDMKREYCVADFKRVVDFLKDKVPGITIATDII 362

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 363 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 422

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           F ++ PY    G  +++ +TE + D    V   +F
Sbjct: 423 FHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRF 457


>gi|395511895|ref|XP_003760186.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
           [Sarcophilus harrisii]
          Length = 577

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 227/401 (56%), Positives = 303/401 (75%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N  EAD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENPSEADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEEDKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKSNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRVGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKQVVDFLKEKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF  T+ L+++YKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQDTMKLVEDYKFPSLFINQFYPRPGTPAAKMQQVPAHVKKQRT 416

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ +F ++ PY    G  +++ +TE + D    V   QF
Sbjct: 417 KDLSQLFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNQF 457


>gi|344289532|ref|XP_003416496.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1
           [Loxodonta africana]
          Length = 578

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 225/401 (56%), Positives = 304/401 (75%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+ + +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITEKASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           +ATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M+++P+ V K+R+
Sbjct: 357 VATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQIPAQVKKQRT 416

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ VF ++ PY    G  +++ +TE++ D    V   +F
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEVSFDSKFYVAHNRF 457


>gi|349604029|gb|AEP99693.1| CDK5 regulatory subunit-associated protein 1-like 1-like protein
           [Equus caballus]
          Length = 578

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/401 (56%), Positives = 304/401 (75%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKTQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGAPLDLPKIRKNPRIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFREGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGET+EDF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETNEDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 416

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ VF ++ PY    G  +++ +TE + D    V   +F
Sbjct: 417 KDLSRVFHSYNPYDHKVGERQQVLVTEESFDSKFYVAHNRF 457


>gi|296197315|ref|XP_002806724.1| PREDICTED: LOW QUALITY PROTEIN: threonylcarbamoyladenosine tRNA
           methylthiotransferase [Callithrix jacchus]
          Length = 579

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/455 (52%), Positives = 325/455 (71%), Gaps = 13/455 (2%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           +EDIED+++      + P  R  +    V PK  +   + +      +      IPG + 
Sbjct: 10  LEDIEDIVSQED---SKPQERHFVRR-DVVPKARRRNTQKYLQEEEDSPPSDSTIPGIQK 65

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++      I K
Sbjct: 66  IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            +   K +V+A CVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK  
Sbjct: 126 AQEENKKIVLAVCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185

Query: 181 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
                   LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +  
Sbjct: 186 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
             +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           E+A++L HP VY+FLHVPVQS SD+VL  M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHVPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA++++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKIEQVPAQVKKQRTKDLSRV 423

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           F +++PY    G  +++ +TE + D    V   +F
Sbjct: 424 FHSYSPYHHKIGERQQVLVTEESFDSKFYVAHNRF 458


>gi|392333847|ref|XP_003753012.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
           [Rattus norvegicus]
 gi|149045301|gb|EDL98387.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
           isoform CRA_d [Rattus norvegicus]
          Length = 520

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/401 (56%), Positives = 303/401 (75%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K     K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHVKKQRT 416

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ VF ++ PY    G  +++ +TE + D    V   +F
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRF 457


>gi|307190740|gb|EFN74642.1| CDKAL1-like protein [Camponotus floridanus]
          Length = 542

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 244/455 (53%), Positives = 319/455 (70%), Gaps = 15/455 (3%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           +EDIEDL+A       P         + V PK  K +       + +   LS  IPGT+T
Sbjct: 9   IEDIEDLIASQDI--TPKERYNSRKHITVRPKRRKQE----QEEVPQPPILSSIIPGTQT 62

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY+KT+GC+HN SD+EYMAGQL+ +GY L+D+  +AD+WL+N+CTVK+P++      I  
Sbjct: 63  IYVKTWGCTHNNSDTEYMAGQLAMYGYNLSDDKLKADLWLLNSCTVKNPAEDQFRNEIEH 122

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
            K   K +V+AGCVPQG+     L+G+SI+GVQQIDRVVEVVEETLKG+ VR LH+KK  
Sbjct: 123 GKKIGKHIVIAGCVPQGAPKSSFLQGLSIIGVQQIDRVVEVVEETLKGNTVRFLHQKKNS 182

Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
                  +L LPKVRRN  +EI+ IN GCL  CTYCKTKHARG LGSY  E +V R +  
Sbjct: 183 GKKMGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYQPEEIVERAKQA 242

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
             +GV E+WL+SEDTGAYGRDIG +LP LL  +V ++ PDG  M+R+GMTNPP+ILEHL 
Sbjct: 243 FEEGVCELWLTSEDTGAYGRDIGTSLPELLWKLV-DVIPDGC-MMRVGMTNPPYILEHLD 300

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           E+A++LRHP VYSFLH+PVQSGSD VL+ M REYT +DF   V+ L E VPG+ IATDII
Sbjct: 301 EMAKILRHPKVYSFLHIPVQSGSDQVLADMRREYTRADFEHTVNFLSERVPGLTIATDII 360

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFP ET+ DF +T+ L ++YKFP + I+QF+ RPGTPAARM KVP+  VK R++ L+  
Sbjct: 361 CGFPTETEVDFEETMALCQKYKFPSLFINQFFSRPGTPAARMPKVPTQEVKTRTKRLSEF 420

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           F+++ PY    G ++++ ITE++ D  H V   +F
Sbjct: 421 FQSYEPYQHKVGLLQKVLITEMSHDKQHYVGHNKF 455


>gi|149045300|gb|EDL98386.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
           isoform CRA_c [Rattus norvegicus]
          Length = 578

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/401 (56%), Positives = 303/401 (75%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K     K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHVKKQRT 416

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ VF ++ PY    G  +++ +TE + D    V   +F
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRF 457


>gi|198423331|ref|XP_002121617.1| PREDICTED: similar to CDK5 regulatory subunit associated protein
           1-like 1 [Ciona intestinalis]
          Length = 516

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/402 (56%), Positives = 302/402 (75%), Gaps = 10/402 (2%)

Query: 50  SLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY-ALTDNSEEADIWLINTCTVKS 108
           ++   IP T+TI++KT+GC+HN SDSEYMAGQL+++GY  +T+N + AD+WL+N+CTVK+
Sbjct: 55  TIQSNIPATQTIFVKTWGCTHNSSDSEYMAGQLASYGYNVVTENGDNADLWLLNSCTVKN 114

Query: 109 PSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKG 168
           P++     +I+K +S  K +V+AGCV QG+     ++G+SI+GVQQIDRVVEVVEETLKG
Sbjct: 115 PAEDHFRNMISKAQSLNKQVVLAGCVSQGAPKQSYIQGLSIIGVQQIDRVVEVVEETLKG 174

Query: 169 HEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
           + VRLL +KK         +LDLPK+RRN F+EI+ IN GCL +CTYCKTKHARG+LGSY
Sbjct: 175 NTVRLLKQKKENGRKIGGASLDLPKIRRNPFIEIISINTGCLNSCTYCKTKHARGNLGSY 234

Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
            V  +V R      +GV E+WL+SEDTGAYGRDIG +LP LL  +V  +P     MLR+G
Sbjct: 235 PVAEIVQRAIQSFGEGVVEIWLTSEDTGAYGRDIGTSLPELLWELVKVIPV--GCMLRVG 292

Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
           MTNPP+IL+HL+E+ ++L HP VYSFLHVPVQSGSD  L  M REYT SDF  VVDTL  
Sbjct: 293 MTNPPYILDHLEEMGKILNHPNVYSFLHVPVQSGSDQTLHEMRREYTASDFELVVDTLRA 352

Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
            VPG+ IATDIICGFP ETDEDF  T+ L ++YKFP + I+QF+PRPGTPAARM ++   
Sbjct: 353 SVPGISIATDIICGFPTETDEDFEDTMTLCEKYKFPSLFINQFFPRPGTPAARMPQIHRQ 412

Query: 402 VVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
            +KKR++ L+ +F ++ PY    G+++++ +TEIA D IH V
Sbjct: 413 EIKKRTKRLSELFRSYEPYGHQLGKIQKVLVTEIAHDQIHYV 454


>gi|26349829|dbj|BAC38554.1| unnamed protein product [Mus musculus]
 gi|148700457|gb|EDL32404.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_d
           [Mus musculus]
          Length = 520

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 227/401 (56%), Positives = 304/401 (75%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ ++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRT 416

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ VF ++ PY    G  +++ +TE + D    V   +F
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRF 457


>gi|21617853|ref|NP_653119.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Mus
           musculus]
 gi|81879575|sp|Q91WE6.1|CDKAL_MOUSE RecName: Full=Threonylcarbamoyladenosine tRNA
           methylthiotransferase; AltName: Full=CDK5 regulatory
           subunit-associated protein 1-like 1; AltName:
           Full=tRNA-t(6)A37 methylthiotransferase
 gi|16359212|gb|AAH16073.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
 gi|56205715|emb|CAI24677.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
 gi|56238093|emb|CAI25816.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
 gi|56800055|emb|CAI35240.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
 gi|56800204|emb|CAI35144.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
 gi|148700456|gb|EDL32403.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_c
           [Mus musculus]
          Length = 578

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 227/401 (56%), Positives = 304/401 (75%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ ++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRT 416

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ VF ++ PY    G  +++ +TE + D    V   +F
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRF 457


>gi|334325985|ref|XP_001375874.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1
           [Monodelphis domestica]
          Length = 579

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/401 (56%), Positives = 303/401 (75%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N  EAD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENPSEADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEEDKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKSNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGLT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF  T+ L+++YKFP + I+QFYPRPGTPAA++++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQDTLKLVEDYKFPSLFINQFYPRPGTPAAKIQQVPAHVKKQRT 416

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ +F ++ PY    G  +++ +TE + D    V   QF
Sbjct: 417 KDLSQLFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNQF 457


>gi|380022483|ref|XP_003695074.1| PREDICTED: CDKAL1-like protein-like [Apis florea]
          Length = 537

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 236/405 (58%), Positives = 303/405 (74%), Gaps = 9/405 (2%)

Query: 51  LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
           L+  IPGT+TIY+KT+GC+HN SDSEYMAGQL+A+GY LT+N  +AD+WL+N+CTVKSP+
Sbjct: 52  LNSIIPGTQTIYVKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYKADLWLLNSCTVKSPA 111

Query: 111 QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE 170
           +      I   K   K +VVAGCVPQG+     L+G+S++GVQQIDRVVEVVEETLKG+ 
Sbjct: 112 EDHFRNEIEAGKKIGKHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNT 171

Query: 171 VRLLHRKKLP-------ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
           VR L +KK         +L LPKVRRN  +EI+ IN GCL  CTYCKTKHARG LGSY  
Sbjct: 172 VRFLQQKKEAGKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPP 231

Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
           E +V R +    +GV E+WL+SEDTG YGRDIG +LP LL  ++ E+ P+G  M RIGMT
Sbjct: 232 EEIVDRAKQAFEEGVCELWLTSEDTGTYGRDIGSSLPELLWKLI-EVIPNGCRM-RIGMT 289

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           NPP+ILEHL+E++++LRHP VYSFLHVPVQSGSD VL+ M REYT +DF  VV+ L E V
Sbjct: 290 NPPYILEHLEEMSKILRHPKVYSFLHVPVQSGSDQVLADMKREYTCADFERVVNFLRERV 349

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
           PG+ IATDIICGFP ET++DF +T+ L ++YKFP + I+QF+PRPGTPAARM KVP+  V
Sbjct: 350 PGLTIATDIICGFPTETEKDFEETMKLCEKYKFPSLFINQFFPRPGTPAARMPKVPTQDV 409

Query: 404 KKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           KKR++ L+  F++++PY      V+ + +TEI+ D  H V   +F
Sbjct: 410 KKRTKRLSEFFQSYSPYDNRIKLVQDVLVTEISHDKKHYVGHNKF 454


>gi|291190604|ref|NP_001167148.1| CDK5 regulatory subunit-associated protein 1-like 1 [Salmo salar]
 gi|223648364|gb|ACN10940.1| CDK5 regulatory subunit-associated protein 1-like 1 [Salmo salar]
          Length = 562

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 225/401 (56%), Positives = 296/401 (73%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+M+T+GCSHN SD EYMAGQL+A GY +T++  EAD+WL+N+CTVK+P++   
Sbjct: 55  IPGMQKIWMRTWGCSHNNSDGEYMAGQLAASGYKMTEDPAEADLWLLNSCTVKNPAEDHF 114

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +VVAGCVPQ    +  L+G+SI+GVQQIDRVVEVV+E +KGH VRLL
Sbjct: 115 RNSIKKAQEQDKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLL 174

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG L SY VE LV
Sbjct: 175 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPVEELV 234

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R R    +GV E+WL+SEDTGAYG+DIG +LP LL  +V E+P     MLR+GMTNPP+
Sbjct: 235 ERARQSFQEGVCEIWLTSEDTGAYGKDIGTDLPTLLWRLVEEIPE--GAMLRLGMTNPPY 292

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E++++L HP VY+FLHVPVQS SD+VL  M REY   DFR V D L + VPG+ 
Sbjct: 293 ILEHLEEMSKILNHPRVYAFLHVPVQSASDSVLMDMKREYCADDFRRVADFLKDKVPGIT 352

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD DF +T +L+KEY+FP + I+QFYPRPGTPAA+M +VP+ + K+R+
Sbjct: 353 IATDIICGFPGETDADFQETCDLVKEYRFPSLFINQFYPRPGTPAAKMDQVPAQLKKQRT 412

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           +EL+++F ++ PY    G  +++ +TE + D  + V   ++
Sbjct: 413 KELSALFHSYNPYHHKIGETQQVLVTEESFDAQYYVAHNKY 453


>gi|425893217|gb|AFY09824.1| CDK5 regulatory subunit associated protein 1-like 1 [Rattus
           norvegicus]
          Length = 578

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/401 (56%), Positives = 302/401 (75%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K     K +V+AGCVPQ       L+G+SI+G QQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGAQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHVKKQRT 416

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ VF ++ PY    G  +++ +TE + D    V   +F
Sbjct: 417 KDLSRVFHSYNPYDHKIGGRQQVLVTEESFDSKFYVAHNRF 457


>gi|322800811|gb|EFZ21687.1| hypothetical protein SINV_11782 [Solenopsis invicta]
          Length = 538

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/455 (53%), Positives = 320/455 (70%), Gaps = 17/455 (3%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           +EDIEDL+A       P         + V PK  K +       +S+   LS  IPGT+T
Sbjct: 9   IEDIEDLIASQDI--TPKERYSSRKHITVRPKRRKQE------QVSQPSVLSSVIPGTQT 60

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY+KT+GC+HN SD+EYMAGQL+ +GY LT++  +AD+WL+N+CTVK+P++      I  
Sbjct: 61  IYVKTWGCTHNSSDTEYMAGQLATYGYNLTEDKLKADLWLLNSCTVKNPAEDQFRNEIEH 120

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
            K+  K +VVAGCVPQG+     L+G+S++GVQQIDRVVEVVEETLKG+ VR L +KK  
Sbjct: 121 GKNIGKHVVVAGCVPQGAPKSSFLQGLSVIGVQQIDRVVEVVEETLKGNTVRFLKQKKDS 180

Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
                  +L LPKVRRN  +EI+ IN GCL  CTYCKTKHARG LGSY  E +V R +  
Sbjct: 181 GKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERAKQA 240

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
             +GV E+WL+SEDTGAYGRDIG NLP LL  +V ++ PDG  M+R+GMTNPP+ILEHL 
Sbjct: 241 FEEGVCELWLTSEDTGAYGRDIGTNLPELLWQLV-DVIPDGC-MMRVGMTNPPYILEHLD 298

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           E+A++L+HP VYSFLH+PVQSGSD VL+ M REYT ++F  VV+ L E VPG+ IATDII
Sbjct: 299 EMAKILQHPRVYSFLHIPVQSGSDQVLADMKREYTRAEFEHVVNFLSERVPGLTIATDII 358

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFP ET+ DF +T+ L ++YKFP + I+Q++PRPGTPAARM KVP+  VK R++ L+  
Sbjct: 359 CGFPTETEMDFEETMTLCQKYKFPSLFINQYFPRPGTPAARMLKVPAQKVKARTKRLSEF 418

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           F+++  Y    G  +++ +TE++ D  H V   +F
Sbjct: 419 FQSYELYGHKVGLQQKVLVTEVSHDKQHYVGHNKF 453


>gi|332024358|gb|EGI64557.1| CDKAL1-like protein [Acromyrmex echinatior]
          Length = 539

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 241/455 (52%), Positives = 318/455 (69%), Gaps = 15/455 (3%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           +EDIEDL+A       P         + + PK  K         +S+   LS  IPGT+T
Sbjct: 9   IEDIEDLIASQDI--TPKERYNSRKHITIRPKRRKQL----QEEVSQPSILSSIIPGTQT 62

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY+KT+GC+HN SD+EYM GQL+++GY LT++  +AD+WL+N+CTVKSP++      I  
Sbjct: 63  IYVKTWGCTHNSSDTEYMTGQLASYGYNLTEDKLKADLWLLNSCTVKSPAEDQFRNEIEY 122

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
            K   K +VVAGCVPQG+     L+G+S++GVQQIDRVVEVVEETLKG+ VR L +KK  
Sbjct: 123 GKKIGKHVVVAGCVPQGAPKSSFLQGLSVIGVQQIDRVVEVVEETLKGNTVRFLQQKKDL 182

Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
                  +L+LPKVRRN  +EI+ IN GCL  CTYCKTKHARG LGSY  E +V R +  
Sbjct: 183 GKKTGGASLNLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERAKQA 242

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
             +GV E+WL+SEDTGAYGRDIG NLP LL  ++ ++ PDG  M+RIGMTNPP+ILEHL 
Sbjct: 243 FEEGVCELWLTSEDTGAYGRDIGTNLPKLLWQLI-DVIPDGC-MMRIGMTNPPYILEHLD 300

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           E+ ++LRH  VYSFLH+PVQSGSD VL+ M REYT ++F  VV+ L E VPG+ IATDII
Sbjct: 301 EMTKILRHSKVYSFLHIPVQSGSDHVLADMKREYTCAEFEHVVNFLSERVPGLTIATDII 360

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFP ET+ DF +T+ L ++YKFP + I+QF+ RPGTPAARM KVP+  VK R++ L+  
Sbjct: 361 CGFPTETEMDFEETMTLCQKYKFPSLFINQFFSRPGTPAARMPKVPAQKVKTRTKRLSEF 420

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           F+++ PY    G ++++ +TE++ D  H V   +F
Sbjct: 421 FQSYEPYGHKVGLIQKVLVTEVSHDKQHYVGHNKF 455


>gi|195456808|ref|XP_002075296.1| GK17257 [Drosophila willistoni]
 gi|194171381|gb|EDW86282.1| GK17257 [Drosophila willistoni]
          Length = 570

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/396 (58%), Positives = 291/396 (73%), Gaps = 9/396 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT+ +Y+KT+GC+HN SDSEYMAGQL+++GY L    +EAD+WL+N+CTVK+PS+   
Sbjct: 71  IPGTQKVYIKTWGCAHNNSDSEYMAGQLASYGYQLCSGKDEADLWLLNSCTVKNPSEDTF 130

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I       K +VVAGCVPQG    + L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 131 RNEIESGMQNGKHVVVAGCVPQGGPKSEYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 190

Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
             KK+        +L LPKVR+N  VEI+ IN GCL  CTYCKTKHARG L SY  E +V
Sbjct: 191 QNKKVNGRRVAGASLALPKVRKNPLVEIISINTGCLNQCTYCKTKHARGDLASYPPEEIV 250

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R R   A+G  E+WL+SEDTGAYGRDIG +LP LL  +V  +P     MLR+GMTNPP+
Sbjct: 251 ERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPY 308

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A+VL+HP VYSFLHVPVQSGSD+VL  M REY   DF  VVD L   VPG+ 
Sbjct: 309 ILEHLEEVAKVLQHPRVYSFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRARVPGLT 368

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFP ET+ DF +T+ L ++Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR+
Sbjct: 369 IATDIICGFPTETEADFEETMTLCEKYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 428

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           + LT +F  + PY G  G V  + +TEI+ D +H V
Sbjct: 429 KRLTDLFYTYEPYAGRVGEVYAVLVTEISHDKLHYV 464


>gi|157129375|ref|XP_001661661.1| radical sam proteins [Aedes aegypti]
 gi|108872257|gb|EAT36482.1| AAEL011435-PA [Aedes aegypti]
          Length = 558

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/411 (56%), Positives = 299/411 (72%), Gaps = 11/411 (2%)

Query: 42  DNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101
           D  + +   L   IPGT++IY+KT+GC+HN SDSEYMAGQL+++GY +T +  +AD+WL+
Sbjct: 49  DAAVPEKSVLESVIPGTQSIYLKTWGCAHNNSDSEYMAGQLASYGYNITSDKSDADLWLL 108

Query: 102 NTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEV 161
           N+CTVK+PS+      I       K +V+AGCVPQ +     + G+SIVGV QIDRV EV
Sbjct: 109 NSCTVKNPSEDTFRNEIQAANKMGKHVVLAGCVPQAAPKSDYMHGLSIVGVHQIDRVTEV 168

Query: 162 VEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHA 214
           VEETLKGH VRLL  KKL       P L LPKVR+N  +EI+PIN GCL ACTYCKTK A
Sbjct: 169 VEETLKGHSVRLLQAKKLNGKRVAGPQLALPKVRKNPLIEIIPINSGCLNACTYCKTKFA 228

Query: 215 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 274
           R  L SY VE +V R   V  +GV E+WL+SEDTG YGRDIG +LP LL  +VA +P DG
Sbjct: 229 RADLVSYPVEEIVQRAAHVFTEGVCEIWLTSEDTGTYGRDIGTSLPELLWQLVAVIP-DG 287

Query: 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT 334
             MLR+GMTNPP+ILEHL+E+A++L HP VYSFLHVP+QSGSD+VLS M REY  SDF  
Sbjct: 288 C-MLRLGMTNPPYILEHLEEMAKILVHPKVYSFLHVPIQSGSDSVLSDMKREYCRSDFEQ 346

Query: 335 VVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394
           +VD L + VPG+ IATDIICGFP ET+EDF  T+ L ++YKFP + I+QFYPRPGTPAA+
Sbjct: 347 IVDFLNDKVPGITIATDIICGFPTETEEDFEHTMTLCEKYKFPSLFINQFYPRPGTPAAK 406

Query: 395 MKKVPSAVVKKRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLV 443
           M+++P+  VK R++ LT +F  + PY+G  + G  +++ +TEI+ D  H V
Sbjct: 407 MQRIPADQVKVRTKRLTDLFYTYEPYVGKYVLGDRQKVLVTEISHDKKHYV 457


>gi|149045299|gb|EDL98385.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
           isoform CRA_b [Rattus norvegicus]
          Length = 442

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 222/373 (59%), Positives = 291/373 (78%), Gaps = 9/373 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K     K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHVKKQRT 416

Query: 408 RELTSVFEAFTPY 420
           ++L+ VF ++ PY
Sbjct: 417 KDLSRVFHSYNPY 429


>gi|41055309|ref|NP_956921.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Danio rerio]
 gi|82187245|sp|Q6PG34.1|CDKAL_DANRE RecName: Full=Threonylcarbamoyladenosine tRNA
           methylthiotransferase; AltName: Full=CDK5 regulatory
           subunit-associated protein 1-like 1; AltName:
           Full=tRNA-t(6)A37 methylthiotransferase
 gi|34784048|gb|AAH57248.1| CDK5 regulatory subunit associated protein 1-like 1 [Danio rerio]
          Length = 547

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 225/419 (53%), Positives = 301/419 (71%), Gaps = 9/419 (2%)

Query: 37  KPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEA 96
           + R H     +       IPG + +++KT+GCSHN SD EYMAGQL+  GY +T++S +A
Sbjct: 37  RARKHKQETGEQMQTDSVIPGMQKVWLKTWGCSHNSSDGEYMAGQLAVAGYQITEDSSDA 96

Query: 97  DIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQID 156
           D+WL+N+CTVKSP++      I K +   K +V+AGCVPQ    +  ++ +SI+GVQQID
Sbjct: 97  DLWLLNSCTVKSPAEDHFRNAIRKAQEQNKKVVLAGCVPQAQPRMDYIKDLSIIGVQQID 156

Query: 157 RVVEVVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYC 209
           RVVEVV+E +KGH VRLL +KK          LDLPK+R+N  +EI+ IN GCL ACTYC
Sbjct: 157 RVVEVVDEAIKGHSVRLLGQKKEKGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYC 216

Query: 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269
           KTKHARG L SY VE LV RVR    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E
Sbjct: 217 KTKHARGDLASYPVEELVERVRQSFQEGVCEIWLTSEDTGAYGRDIGSDLPTLLWRLVEE 276

Query: 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTL 329
           +P     MLR+GMTNPP+ILEHL+E++ +L+HP V+SFLHVP+QS SD+VL  M REY  
Sbjct: 277 IPE--GAMLRLGMTNPPYILEHLEEMSRILQHPRVFSFLHVPLQSASDSVLMEMRREYCC 334

Query: 330 SDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
           +DF  +VD L E VPG+ IATDIICGFPGETDEDF QT+ L++ Y+FP + I+QFYPRPG
Sbjct: 335 ADFTHLVDYLKERVPGITIATDIICGFPGETDEDFEQTLALVRRYRFPSLFINQFYPRPG 394

Query: 390 TPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           TPAA M+++P+ V K+R++EL+++F ++ PY    G  +++ +TE + D  + V   +F
Sbjct: 395 TPAALMQQLPAHVKKQRTKELSALFHSYRPYDHKMGEQQQVLVTEESFDSQYYVAHNKF 453


>gi|148700454|gb|EDL32401.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_a
           [Mus musculus]
          Length = 444

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 221/373 (59%), Positives = 292/373 (78%), Gaps = 9/373 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ ++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRT 416

Query: 408 RELTSVFEAFTPY 420
           ++L+ VF ++ PY
Sbjct: 417 KDLSRVFHSYNPY 429


>gi|195382799|ref|XP_002050116.1| GJ21959 [Drosophila virilis]
 gi|194144913|gb|EDW61309.1| GJ21959 [Drosophila virilis]
          Length = 553

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/396 (57%), Positives = 295/396 (74%), Gaps = 10/396 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           +PGT+ +Y+KT+GC+HN SDSEYMAGQL+A+GY L+   +EAD+WL+N+CTVK+PS+   
Sbjct: 70  VPGTQKVYVKTWGCAHNNSDSEYMAGQLAAYGYNLS-GKDEADLWLLNSCTVKNPSEDTF 128

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I       K +VVAGCVPQG+     L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 129 RNEIESGMRNGKHVVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 188

Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
             KK+        AL LPKVR+N  +EI+ IN GCL  CTYCKTKHARG L SY  + +V
Sbjct: 189 QNKKVHGRRVAGAALSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPDEIV 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R R    +G  E+WL+SEDTGAYGRDIG +LP LL  +V  +P     MLR+GMTNPP+
Sbjct: 249 ERARQSFDEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPY 306

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL  M REY   DF  VVD L   VPG+ 
Sbjct: 307 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRSRVPGLT 366

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFP ET++DF +T+ L ++Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR+
Sbjct: 367 IATDIICGFPTETEQDFEETMTLCEKYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 426

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           + LT +F ++ PY G EG++  + +TEI+ D +H V
Sbjct: 427 KRLTDLFYSYEPYAGREGQLYTVLVTEISHDKLHYV 462


>gi|443735052|gb|ELU18907.1| hypothetical protein CAPTEDRAFT_20043 [Capitella teleta]
          Length = 561

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/451 (52%), Positives = 318/451 (70%), Gaps = 13/451 (2%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNK-NKPRLHDNHLSKTGSLSPKIPGTE 59
           ++DIED+ + +  G      R  + A     + +K N P           S+   IPGT+
Sbjct: 12  IDDIEDIFSKTSEGIPREKVRKHVVARARKQRASKRNAPEASQVQHPLADSV---IPGTQ 68

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
            IY+KT+GC+HN SD EYMAGQL+A+GY +T++ + A +WL+N+CTVK+P++      I 
Sbjct: 69  NIYVKTWGCAHNSSDGEYMAGQLAAYGYTITEDKDSAHLWLLNSCTVKNPAEDHFRNEIT 128

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           K K   K +V++GCVPQG+     ++G+S++GV QIDRVVEVVEETLKG+ VRL  +KK 
Sbjct: 129 KAKEQGKYVVISGCVPQGAPRASYIQGLSVIGVHQIDRVVEVVEETLKGNAVRLFGQKKE 188

Query: 180 P-------ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
                   AL LPK+RRN  +EI+ IN GCL ACTYCKTKHARG LGSY +E +V R + 
Sbjct: 189 AGKKLGGAALSLPKIRRNPLIEIIAINTGCLNACTYCKTKHARGELGSYPIEQIVNRAKQ 248

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
              +GV E+WL+SED GAYG DIGV LP LL  +V E  PDG+ M+R+GMTNPP+ILEHL
Sbjct: 249 SFEEGVVEIWLTSEDLGAYGIDIGVTLPQLLWQLV-ETIPDGA-MMRLGMTNPPYILEHL 306

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
           +E+A++L+HP VYSFLHVPVQSGSDAVL  M REY  +DF  VVD L E VP + +ATDI
Sbjct: 307 EEMAKILKHPRVYSFLHVPVQSGSDAVLGDMKREYCRADFMHVVDFLKERVPNITVATDI 366

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
           ICGFP ET+EDF++T+ L+++Y FP + I+QF+PRPGTPAA+M+++P   VKKRS++LT 
Sbjct: 367 ICGFPTETEEDFDETMTLVEKYHFPSLFINQFFPRPGTPAAKMERIPPPQVKKRSKQLTE 426

Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           +F ++  Y    G+ + + +TEI+ DG + V
Sbjct: 427 LFHSYQTYGNQVGQTQTVLVTEISHDGNYFV 457


>gi|354468803|ref|XP_003496840.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1,
           partial [Cricetulus griseus]
          Length = 432

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 219/373 (58%), Positives = 289/373 (77%), Gaps = 9/373 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIRKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +VA +P     MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVAVIPE--GAMLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF +T+ L++EYKFP + I+QFYPRPGTPAA+ ++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETLKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRT 416

Query: 408 RELTSVFEAFTPY 420
           ++L+ VF ++ PY
Sbjct: 417 KDLSRVFHSYNPY 429


>gi|307207026|gb|EFN84849.1| CDKAL1-like protein [Harpegnathos saltator]
          Length = 542

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/406 (56%), Positives = 299/406 (73%), Gaps = 10/406 (2%)

Query: 51  LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
           LS  IPGT+T+Y+KT+GC+HN SD+EYMAGQL+A GY L D+  +AD+WL+N+CTVK+P+
Sbjct: 46  LSSIIPGTQTVYVKTWGCTHNSSDAEYMAGQLAAQGYNLIDDKLKADLWLLNSCTVKNPA 105

Query: 111 QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE 170
           +      I   + A K +VVAGCVPQG+     L+G+SI+GVQQIDRVVEVVEETLKGH 
Sbjct: 106 EDQFRNEIENGRKAGKHIVVAGCVPQGAPKSPFLKGLSIIGVQQIDRVVEVVEETLKGHT 165

Query: 171 VRLLHRKKLPA--------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
           VR L  KK           L+LPK+R+N  +EI+ I+ GCL  CTYCKTKHARG LGSY 
Sbjct: 166 VRFLRTKKNSTGRKIGGSTLNLPKIRKNPRIEIIAISTGCLNQCTYCKTKHARGQLGSYP 225

Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
            + +V R      +GV E+W++SEDTGAYGRDIG NLP LL  +V  +P   S M+RIGM
Sbjct: 226 PDEIVARALQAFEEGVCELWITSEDTGAYGRDIGTNLPELLWKLVDVIPE--SCMMRIGM 283

Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
           TNPP+ILEHL EIA++LRHP VYSFLH+PVQSGSD VL+ M REYT +DF  VV+ L E 
Sbjct: 284 TNPPYILEHLDEIAKILRHPKVYSFLHIPVQSGSDQVLADMKREYTRADFEHVVNYLRER 343

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
           VP + IATDIICGFP ET+E+F +T+ L ++YKFP + I+QF+PRPGTPAARM ++P+  
Sbjct: 344 VPDLTIATDIICGFPSETEENFEETLTLCRKYKFPSLFINQFFPRPGTPAARMPRIPTQQ 403

Query: 403 VKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           VK R+++LT +F ++ PY    G++  + +TE+A D +H V   +F
Sbjct: 404 VKARTKKLTELFYSYEPYENQVGKLCCVLVTEVAHDKLHYVGHNKF 449


>gi|195027257|ref|XP_001986500.1| GH20489 [Drosophila grimshawi]
 gi|193902500|gb|EDW01367.1| GH20489 [Drosophila grimshawi]
          Length = 554

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/457 (52%), Positives = 315/457 (68%), Gaps = 21/457 (4%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKN---KPRLHDNHLSKTGSLS----P 53
           ++DIEDL++        P  R   N   V  +  K    KP L D+   +T         
Sbjct: 12  IDDIEDLISADD---IKPRDRYE-NKKNVTVRAKKRAPIKPTLSDDEKEETKPQKIIHES 67

Query: 54  KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
            IPGT+ +Y+KT+GC+HN SDSEYMAGQL++FGY L+  +E AD+WL+N+CTVK+PS+  
Sbjct: 68  VIPGTQKVYVKTWGCAHNNSDSEYMAGQLASFGYKLSGKNE-ADLWLLNSCTVKNPSEDT 126

Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
               I       K +VVAGCVPQG+     L G+S++GVQQIDRVVEVVEETLKGH VRL
Sbjct: 127 FRNEIEAGMRNGKHVVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRL 186

Query: 174 LHRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
           L  KK+         L LPKVR+N  +EI+ IN GCL  CTYCKTKHARG L SY    +
Sbjct: 187 LQNKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPAEI 246

Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
           V R R    +G  E+WL+SEDTGAYGRDIG +LP LL  +V  +P     MLR+GMTNPP
Sbjct: 247 VDRARQSFDEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPP 304

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
           +ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL  M REY   DF  VVD L   VPG+
Sbjct: 305 YILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRSRVPGL 364

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406
            IATDIICGFP ET++DF +T+ L ++Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR
Sbjct: 365 TIATDIICGFPTETEQDFEETMTLCEKYQFPSLFINQFFPRPGTPAAKMERIPANLVKKR 424

Query: 407 SRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           ++ LT +F ++ PY G EG++  + +TEI+ D +H V
Sbjct: 425 TKRLTDLFYSYEPYAGREGQLYTVLVTEISHDKLHYV 461


>gi|321479315|gb|EFX90271.1| hypothetical protein DAPPUDRAFT_300126 [Daphnia pulex]
          Length = 560

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 244/458 (53%), Positives = 321/458 (70%), Gaps = 23/458 (5%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPK------ 54
           ++DIED++ G G   A        NAVG   K  K  P   D   +KT  + PK      
Sbjct: 7   LDDIEDIV-GEGDLTALERSVARSNAVG---KRVKKTPNNKDP--AKTNKVIPKVEENGS 60

Query: 55  -IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
            IPGT+ I++KT+GC+HN SDSEYMAGQL+A+GY+LTD   EAD+WL+N+CTVK+P++  
Sbjct: 61  IIPGTQKIWVKTWGCAHNNSDSEYMAGQLAAYGYSLTDEKYEADLWLLNSCTVKTPAEDH 120

Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
               I   ++   P+VVAGCVPQG      L+G+SI+GVQQIDRVVEVVEETLKGH VRL
Sbjct: 121 FKNEIDDGRARGTPVVVAGCVPQGQPKANYLQGLSIIGVQQIDRVVEVVEETLKGHSVRL 180

Query: 174 LHRKKLP--------ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
           L  KK          +L LPK+R+N  +EI+PIN GCL  CTYCKTKHARG LGSY  E 
Sbjct: 181 LGTKKDAEKKKTGGASLLLPKIRKNPLIEIIPINTGCLNQCTYCKTKHARGELGSYPPEE 240

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
           +V R      +GV E+WL+SEDTGAYGRDIG +LP LL  +V ++ PDG  MLR+GMTNP
Sbjct: 241 IVARAIQSFQEGVCEIWLTSEDTGAYGRDIGSSLPELLRQLV-QVIPDG-CMLRLGMTNP 298

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
           P+ILEHL+ IAE+L HP VY+FLH+PVQSGSD VL+ M REY ++DF  VV+ L E VPG
Sbjct: 299 PYILEHLEAIAEILNHPRVYAFLHLPVQSGSDCVLTDMKREYCVADFERVVNFLRERVPG 358

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
           + IATDIICGFP ET++DF+ T+ L  +++FP + I+QF+PR GTPA RM++VP+  VK 
Sbjct: 359 ISIATDIICGFPTETEQDFDLTMELCSKHRFPSLFINQFFPRVGTPAYRMERVPTKQVKN 418

Query: 406 RSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           R++ L+ +F+++ PY    G+ + + +T+I+ D  + V
Sbjct: 419 RTKRLSELFKSYQPYDDQVGQRQSVLVTDISHDKNYYV 456


>gi|355561353|gb|EHH17985.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
           mulatta]
          Length = 576

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/401 (56%), Positives = 299/401 (74%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+ +GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 60  IPGIQKIWIRTWGCSHNNSDGEYMAGQLATYGYKITENASDADLWLLNSCTVKNPAEDHF 119

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 179

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 GQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 239

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG NLP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 357

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ VVKK  
Sbjct: 358 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVVKKAK 417

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
            +      +++PY    G  +++ +TE + D    V   +F
Sbjct: 418 DKXXXXXXSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRF 458


>gi|428184659|gb|EKX53514.1| hypothetical protein GUITHDRAFT_64346 [Guillardia theta CCMP2712]
          Length = 563

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 231/390 (59%), Positives = 296/390 (75%), Gaps = 3/390 (0%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-SEEADIWLINTCTVKSPSQSA 113
           IPG + I++KT GC+HN SD EYMAG L+++GY +T+  SE+ D +L N+CTVK PSQ +
Sbjct: 2   IPGMQRIFLKTQGCAHNVSDGEYMAGLLASYGYEITETWSEDVDCFLFNSCTVKGPSQDS 61

Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
              ++AK KS+   +VVAGCVPQG     E + VSI+G QQI RVVEVVEE +KG+ V+L
Sbjct: 62  FLNMVAKAKSSGASVVVAGCVPQGEPGRGEFDDVSIIGTQQIHRVVEVVEEAIKGNTVKL 121

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
           L +++ PAL+LPK+RRN  VEI+PI++GCL  CTYCKTKHARG L SYT +S+V RVRTV
Sbjct: 122 LGQRERPALELPKIRRNALVEIVPISMGCLNHCTYCKTKHARGDLVSYTPDSIVSRVRTV 181

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
           I++GV+EVWLSSEDTGAYG+DI V+LP LL AIV  L PDG  MLR+GMTNPP ILEH +
Sbjct: 182 ISEGVREVWLSSEDTGAYGKDINVSLPYLLGAIVDAL-PDG-VMLRVGMTNPPHILEHKE 239

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
            +A VL HP V+ FLH+PVQ GSD VL  M REYT  DF  +VD L+E VP + IATDII
Sbjct: 240 AVARVLNHPRVFKFLHIPVQCGSDKVLQDMKREYTRKDFEVLVDYLLEHVPDITIATDII 299

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFP E++EDF  T++L+ +YKFP V+I+QFYPRPGT AA+M K+ S VVK RSR +T+ 
Sbjct: 300 CGFPTESEEDFQHTMDLLDKYKFPIVNIAQFYPRPGTVAAKMPKLQSGVVKDRSRRVTAH 359

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           FE++  +  + GR ER+W+ E   D  ++V
Sbjct: 360 FESYRTWDHLVGRKERVWVIEYGKDENYVV 389


>gi|118373032|ref|XP_001019710.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
           [Tetrahymena thermophila]
 gi|89301477|gb|EAR99465.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
           [Tetrahymena thermophila SB210]
          Length = 574

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/444 (51%), Positives = 309/444 (69%), Gaps = 25/444 (5%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGV----------NPKYNKNKPRLHDNHLSKTGS 50
           + DIED++AG          R+    +             PK  + +    D+ +     
Sbjct: 6   LADIEDVIAGDVADDFIQKDRVKDRNIKKRPKKVKKVEEEPKQEELQEPEDDDEIKFDMP 65

Query: 51  LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
           ++ ++PGT+ +Y+KTFGCSHN SDSE+M GQL+ +GY L  + ++A + L+N+CTVK+PS
Sbjct: 66  VNNQVPGTQNVYVKTFGCSHNISDSEFMMGQLAEYGYNLCSDPKDAHLILVNSCTVKNPS 125

Query: 111 QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE 170
           Q A  T++   K  KKP+VVAGCVPQG R++  LE VS++G+ QIDRVVEVVEETLKG++
Sbjct: 126 QDAFMTIVKTYKHKKKPIVVAGCVPQGDRNIPGLEDVSVIGISQIDRVVEVVEETLKGNK 185

Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           VRL  +K LP+LDLPK+R             CLG+CTYCKTKHARG LGSY  E++V RV
Sbjct: 186 VRLYGKKTLPSLDLPKIR-------------CLGSCTYCKTKHARGKLGSYQPEAIVNRV 232

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           +TV  +GVKE+WL+SEDTGAYGRDIG ++  LL  IV  LP D   MLR+GMTNPP+ILE
Sbjct: 233 KTVCEEGVKEIWLTSEDTGAYGRDIGTDISQLLRLIVEVLPND--VMLRVGMTNPPYILE 290

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
           HL+ ++ +LRHP V+SFLH+PVQ+ ++ VL  MNREYT  +F  V D L++ VP M IAT
Sbjct: 291 HLQNMSTILRHPRVFSFLHIPVQAANNTVLENMNREYTCEEFEQVCDYLLKNVPNMTIAT 350

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 410
           DIICGFPGET+  F+ T+ L+ +YKFP ++ISQFYPRPGT A +MKKVPS  VK RS+++
Sbjct: 351 DIICGFPGETNAQFDDTLKLVDKYKFPILNISQFYPRPGTAAMKMKKVPSQDVKMRSKKI 410

Query: 411 TSVFEAFTPYLGMEGRVERIWITE 434
           T +F+ F  +  + G  +RIWI +
Sbjct: 411 TELFDTFKRWDHLLGTTQRIWIND 434


>gi|449279432|gb|EMC87024.1| CDK5 regulatory subunit-associated protein 1-like 1, partial
           [Columba livia]
          Length = 515

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 222/401 (55%), Positives = 296/401 (73%), Gaps = 11/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +TDNS EAD+WL+N+CTVK+P++   
Sbjct: 58  IPGVQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITDNSAEADLWLLNSCTVKNPAEDHF 117

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +  KK +V+AGCVPQ       L+G+SI+GV     ++EVVEET+KGH VRLL
Sbjct: 118 RNSIKKAQEGKKKVVLAGCVPQAQPRQDYLKGLSIIGVCIF--IIEVVEETIKGHSVRLL 175

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG L SY +E LV
Sbjct: 176 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELV 235

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V  +P     MLR+GMTNPP+
Sbjct: 236 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVEAIPE--GAMLRLGMTNPPY 293

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 294 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKQVVDFLKEKVPGIT 353

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETDEDF +T+ L+++Y+FP + I+QFYPRPGTPAA++ +VP+AV K+R+
Sbjct: 354 IATDIICGFPGETDEDFQETMKLVEQYRFPSLFINQFYPRPGTPAAKLHQVPAAVKKQRT 413

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ +F ++ PY    G  +R+ +TE + D  + V    F
Sbjct: 414 KDLSQLFHSYNPYDHKVGERQRVLVTEESFDSNYYVAHNPF 454


>gi|195335207|ref|XP_002034266.1| GM19985 [Drosophila sechellia]
 gi|194126236|gb|EDW48279.1| GM19985 [Drosophila sechellia]
          Length = 556

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/418 (55%), Positives = 301/418 (72%), Gaps = 21/418 (5%)

Query: 34  NKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS 93
           +K KP++H++           IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+   
Sbjct: 56  DKPKPKIHES----------VIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GK 104

Query: 94  EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 153
           EEAD+WL+N+CTVK+PS+      I       K +VVAGCVPQG+     L G+S++GVQ
Sbjct: 105 EEADLWLLNSCTVKNPSEDTFRNEIKSGMQNGKYIVVAGCVPQGAPKSDYLNGLSVIGVQ 164

Query: 154 QIDRVVEVVEETLKGHEVRLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGA 205
           QIDRVVEVVEETLKGH V+LL  KK           L LPKVR+N  +EI+ IN GCL  
Sbjct: 165 QIDRVVEVVEETLKGHSVQLLQNKKKVLGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQ 224

Query: 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 265
           CTYCKTKHARG L SY  E +V R R   A+G  E+WL+SEDTGAYGRDIG +LP LL  
Sbjct: 225 CTYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWK 284

Query: 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 325
           +V  +P +   MLR+GMTNPP+ILEHL+E+A+V++HP VYSFLHVPVQSGSD+VL  M R
Sbjct: 285 LVEVIPEN--CMLRVGMTNPPYILEHLEEVAKVMQHPRVYSFLHVPVQSGSDSVLGEMKR 342

Query: 326 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385
           EY   DF  VVD L E VPG+ IATDIICGFP ET++DF +T+ L  +Y+FP + I+QF+
Sbjct: 343 EYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQFF 402

Query: 386 PRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           PRPGTPAA+M+++P+ +VKKR++ LT +F ++ PY    G +  + +TE++ D +H V
Sbjct: 403 PRPGTPAAKMERIPANLVKKRTKRLTDLFYSYEPYAERVGEIYTVLVTEVSHDKLHYV 460


>gi|195584188|ref|XP_002081896.1| GD25482 [Drosophila simulans]
 gi|194193905|gb|EDX07481.1| GD25482 [Drosophila simulans]
          Length = 556

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/418 (55%), Positives = 301/418 (72%), Gaps = 21/418 (5%)

Query: 34  NKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS 93
           +K KP++H++           IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+   
Sbjct: 56  DKPKPKIHES----------VIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GK 104

Query: 94  EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 153
           EEAD+WL+N+CTVK+PS+      I       K +VVAGCVPQG+     L G+S++GVQ
Sbjct: 105 EEADLWLLNSCTVKNPSEDTFRNEIKSGMQNGKYVVVAGCVPQGAPKSDYLNGLSVIGVQ 164

Query: 154 QIDRVVEVVEETLKGHEVRLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGA 205
           QIDRVVEVVEETLKGH V+LL  KK           L LPKVR+N  +EI+ IN GCL  
Sbjct: 165 QIDRVVEVVEETLKGHSVQLLQNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQ 224

Query: 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 265
           CTYCKTKHARG L SY  E +V R R   A+G  E+WL+SEDTGAYGRDIG +LP LL  
Sbjct: 225 CTYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWK 284

Query: 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 325
           +V  +P +   MLR+GMTNPP+ILEHL+E+A+V++HP VYSFLHVPVQSGSD+VL  M R
Sbjct: 285 LVEVIPEN--CMLRVGMTNPPYILEHLEEVAKVMQHPRVYSFLHVPVQSGSDSVLGEMKR 342

Query: 326 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385
           EY   DF  VVD L E VPG+ IATDIICGFP ET++DF +T+ L  +Y+FP + I+QF+
Sbjct: 343 EYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQFF 402

Query: 386 PRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           PRPGTPAA+M+++P+ +VKKR++ LT +F ++ PY    G +  + +TE++ D +H V
Sbjct: 403 PRPGTPAAKMERIPANLVKKRTKRLTDLFYSYEPYAERVGEIYTVLVTEVSHDKLHYV 460


>gi|194755317|ref|XP_001959938.1| GF11786 [Drosophila ananassae]
 gi|190621236|gb|EDV36760.1| GF11786 [Drosophila ananassae]
          Length = 557

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/397 (57%), Positives = 291/397 (73%), Gaps = 11/397 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+   E+AD+WL+N+CTVK+PS+   
Sbjct: 69  IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GKEDADLWLLNSCTVKNPSEDTF 127

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I       K +VVAGCVPQG+     L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 128 RNEIESGMKNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGHSVRLL 187

Query: 175 HRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
             KK           L LPKVR+N  +EI+ IN GCL  CTYCKTKHARG L SY  E +
Sbjct: 188 QNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEV 247

Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
           V R R   A+G  E+WL+SEDTGAYGRDIG +LP LL  +V  +P     MLR+GMTNPP
Sbjct: 248 VERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPE--HCMLRVGMTNPP 305

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
           +ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL  M REY   DF  VVD L E VPG+
Sbjct: 306 YILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRERVPGV 365

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406
            IATDIICGFP ET+ DF +T+ L  +Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR
Sbjct: 366 TIATDIICGFPTETEADFEETMTLCAKYRFPSLFINQFFPRPGTPAAKMERIPANLVKKR 425

Query: 407 SRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           ++ LT +F  + PY G  G++  + +TEI+ D +H V
Sbjct: 426 TKRLTDLFYTYEPYSGRVGQIYTVLVTEISHDKLHYV 462


>gi|91094359|ref|XP_970283.1| PREDICTED: similar to GA19679-PA [Tribolium castaneum]
          Length = 548

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/401 (56%), Positives = 295/401 (73%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT+ IY+KT+GC+HN SD+EYMAGQL+A+GY LT+N +EAD+WL+N+CTVK+P++   
Sbjct: 67  IPGTQKIYIKTWGCAHNSSDTEYMAGQLTAYGYKLTENKKEADLWLLNSCTVKNPAEDHF 126

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I + K   K +VVAGCVPQG+     ++G+SI+GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 127 RNQIQEAKELGKYIVVAGCVPQGAPKASFIQGLSIIGVQQIDRVVEVVEETLKGNTVKLL 186

Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
             KK         +L LPKVRRN  +EI+ IN GCL  CTYCKTKHARG LGSY  E +V
Sbjct: 187 GTKKEQGKKIGGASLLLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIV 246

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTG YGRDIG +LP LL  +V E+ P+G   LR+GMTNPP+
Sbjct: 247 ERAKQAFEEGVVEIWLTSEDTGTYGRDIGTSLPELLWKLV-EVIPEGCR-LRLGMTNPPY 304

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL E+A+++ HP VYSFLHVPVQSGSD VLS M REY   DF  VVD L   +PGM 
Sbjct: 305 ILEHLSEVAKIMNHPRVYSFLHVPVQSGSDQVLSDMKREYFRKDFEHVVDFLQSQIPGMT 364

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFP ET++DF  T++L ++YKFP + I+QF+PRPGTPAA + ++P+  VK R+
Sbjct: 365 IATDIICGFPTETEKDFEDTLSLCEKYKFPSLFINQFFPRPGTPAALLPRIPAQEVKGRT 424

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           + LT +F ++ PY    G V+ + +TE++ D  H V   +F
Sbjct: 425 KRLTDLFYSYQPYDKKVGEVQEVLVTEVSHDKKHYVGHNKF 465


>gi|270014918|gb|EFA11366.1| hypothetical protein TcasGA2_TC011523 [Tribolium castaneum]
          Length = 545

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/401 (56%), Positives = 295/401 (73%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT+ IY+KT+GC+HN SD+EYMAGQL+A+GY LT+N +EAD+WL+N+CTVK+P++   
Sbjct: 64  IPGTQKIYIKTWGCAHNSSDTEYMAGQLTAYGYKLTENKKEADLWLLNSCTVKNPAEDHF 123

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I + K   K +VVAGCVPQG+     ++G+SI+GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 124 RNQIQEAKELGKYIVVAGCVPQGAPKASFIQGLSIIGVQQIDRVVEVVEETLKGNTVKLL 183

Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
             KK         +L LPKVRRN  +EI+ IN GCL  CTYCKTKHARG LGSY  E +V
Sbjct: 184 GTKKEQGKKIGGASLLLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIV 243

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTG YGRDIG +LP LL  +V E+ P+G   LR+GMTNPP+
Sbjct: 244 ERAKQAFEEGVVEIWLTSEDTGTYGRDIGTSLPELLWKLV-EVIPEGCR-LRLGMTNPPY 301

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL E+A+++ HP VYSFLHVPVQSGSD VLS M REY   DF  VVD L   +PGM 
Sbjct: 302 ILEHLSEVAKIMNHPRVYSFLHVPVQSGSDQVLSDMKREYFRKDFEHVVDFLQSQIPGMT 361

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFP ET++DF  T++L ++YKFP + I+QF+PRPGTPAA + ++P+  VK R+
Sbjct: 362 IATDIICGFPTETEKDFEDTLSLCEKYKFPSLFINQFFPRPGTPAALLPRIPAQEVKGRT 421

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           + LT +F ++ PY    G V+ + +TE++ D  H V   +F
Sbjct: 422 KRLTDLFYSYQPYDKKVGEVQEVLVTEVSHDKKHYVGHNKF 462


>gi|302846252|ref|XP_002954663.1| hypothetical protein VOLCADRAFT_64943 [Volvox carteri f.
           nagariensis]
 gi|300260082|gb|EFJ44304.1| hypothetical protein VOLCADRAFT_64943 [Volvox carteri f.
           nagariensis]
          Length = 401

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 219/335 (65%), Positives = 275/335 (82%), Gaps = 2/335 (0%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYAL-TDNSEEADIWLINTCTVKSPSQSA 113
           +PGT+ +++KTFGCSHN SDSEYMAGQL  +GY   +     AD+WLIN+CTVK PSQ+ 
Sbjct: 3   VPGTQAVWVKTFGCSHNISDSEYMAGQLQDYGYRRESAGCNPADLWLINSCTVKGPSQAG 62

Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
           M +LIA  ++  K L+VAGCVPQG + L EL+GVS++GV QIDRVVE VEETL+G+ VRL
Sbjct: 63  MSSLIAVGRAGGKRLLVAGCVPQGDKRLPELQGVSVLGVTQIDRVVEAVEETLRGNTVRL 122

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
           L +K+LP LDLPKVRRN+ +EI+PI+ GCLGACTYCKTKHARGHLGSY   +LV RVR  
Sbjct: 123 LAKKELPRLDLPKVRRNRHIEIVPISTGCLGACTYCKTKHARGHLGSYDPAALVERVRQA 182

Query: 234 IAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
            AD  V+E+W+SSEDTGAYGRDIG +LP LL+A++A LPPDG TMLR+GMTNPP++LEHL
Sbjct: 183 AADPWVREIWISSEDTGAYGRDIGCSLPELLDALIAVLPPDGRTMLRVGMTNPPYVLEHL 242

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
           + ++  LRHPCV+S+LHVPVQSGSDAVL +M REYT+++FR VVDTL+  VPGM++ATDI
Sbjct: 243 EALSAALRHPCVFSYLHVPVQSGSDAVLDSMKREYTVAEFRRVVDTLLAGVPGMELATDI 302

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
           I  FPGE+  D  +T+ L+++Y+FP  HISQFYPR
Sbjct: 303 ITAFPGESPGDHVRTLELLRQYRFPHTHISQFYPR 337


>gi|328773588|gb|EGF83625.1| hypothetical protein BATDEDRAFT_1672, partial [Batrachochytrium
           dendrobatidis JAM81]
          Length = 446

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/406 (56%), Positives = 296/406 (72%), Gaps = 17/406 (4%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY-ALTDNS--EEADIWLINTCTVKSPSQ 111
           +PG  ++++KT+GC HN SD EYMAG L+A GY  + D+S  EEA +W++N+CTVK PSQ
Sbjct: 1   LPGQASVFVKTWGCGHNNSDGEYMAGLLAADGYNVILDHSKAEEAQVWVLNSCTVKGPSQ 60

Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
                 I K K A K +VVAGCVPQ S    E +G+S++GVQQID+VV VVEETLKG+ +
Sbjct: 61  QTFVNDIDKGKLAGKKIVVAGCVPQASPSNDEWKGLSVIGVQQIDQVVRVVEETLKGNTI 120

Query: 172 RLLHRKKLPA------------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
           RL+   K  +            LDLPKVRRN F+EI+PIN GCL  CTYCKTKHARG LG
Sbjct: 121 RLMKEAKEVSADGVKRKAGGARLDLPKVRRNPFIEIIPINTGCLNQCTYCKTKHARGDLG 180

Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD--GSTM 277
           SY++  ++ RV +V+ +GVKE+WL+SEDTGAYGRDIGV++  LL  I+  +        M
Sbjct: 181 SYSLAEIIARVESVLHEGVKEIWLTSEDTGAYGRDIGVSIVDLLEGILVAMDKHIVQDAM 240

Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
           LR+GMTNPP+ILEHLK IA+VL HP VYSFLHVPVQ+GS  VL  M R Y + DF  VVD
Sbjct: 241 LRVGMTNPPYILEHLKGIAKVLNHPKVYSFLHVPVQAGSTKVLDDMRRLYAVQDFERVVD 300

Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK 397
            L E VP + IATDIICGFP ETDEDF++T++L+++YKF  +HISQFYPRPGTPAARMK+
Sbjct: 301 VLREKVPCVTIATDIICGFPTETDEDFDETMHLLEKYKFSVLHISQFYPRPGTPAARMKR 360

Query: 398 VPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           + + +VK RSR  T+ FE++T Y  + G +++I +TE +ADG H V
Sbjct: 361 ISTNIVKNRSRRATTFFESYTTYDSLVGTIQKILVTEQSADGNHYV 406


>gi|158292783|ref|XP_314113.4| AGAP005211-PA [Anopheles gambiae str. PEST]
 gi|157017155|gb|EAA09381.5| AGAP005211-PA [Anopheles gambiae str. PEST]
          Length = 553

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/457 (53%), Positives = 314/457 (68%), Gaps = 17/457 (3%)

Query: 3   DIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNK---NKPRLHDNHLSKTGSLSPKIPGTE 59
           DIEDL+  S    +P    L    V V  K  K   N+P+  +    +   L   IP T+
Sbjct: 11  DIEDLI--SLDDPSPAERYLNKKDVTVRTKRVKVRANRPK--ETSTVEKPLLDSVIPETQ 66

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
            IYMKT+GC+HN SD+EYMAGQL+ +GY LT + + AD+W++N+CTVK+PS+      I 
Sbjct: 67  HIYMKTWGCAHNTSDTEYMAGQLAQYGYNLTSDKDSADLWVLNSCTVKNPSEDTFRNEIE 126

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
               A K +VVAGCVPQ +     L+G+S+VGVQQIDRV EVVEETLKGH VRLL  KK+
Sbjct: 127 AAHQAGKHVVVAGCVPQAAPRSDYLKGLSVVGVQQIDRVAEVVEETLKGHSVRLLQAKKV 186

Query: 180 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
                  P L LPKVR+N  +E++PIN GCL ACTYCKTK AR  L SY V+ +V R + 
Sbjct: 187 DGRKVAGPKLALPKVRKNPLIEVIPINSGCLNACTYCKTKFARADLVSYPVQEIVDRAQQ 246

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
           V  DGV E+WL+SEDTG YGRDIG +LP LL  +V E+ P+G  M+R+GMTNPP+ILEHL
Sbjct: 247 VFQDGVCEIWLTSEDTGTYGRDIGSSLPELLWQLV-EVIPEGC-MMRLGMTNPPYILEHL 304

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
            E+A++L HP VYSFLH+PVQSGSDA+L  M REY + DF  +VD L   VPG+ IATDI
Sbjct: 305 DEMAKILSHPRVYSFLHIPVQSGSDAILGEMRREYCVKDFERMVDFLRAQVPGITIATDI 364

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
           ICGFPGET+ DF+ T+ L ++Y+FP + I+QF+PRPGTPAA+M KVP+  VK R++ LT 
Sbjct: 365 ICGFPGETEADFDDTLALCEKYQFPSLFINQFFPRPGTPAAKMTKVPANEVKTRTKRLTD 424

Query: 413 VFEAFTPYLGME-GRVERIWITEIAADGIHLVRLEQF 448
           +F ++ PY   E G  + + +TEI+ D  H V   +F
Sbjct: 425 LFHSYEPYKKYEAGTKQTVLVTEISHDRKHFVGHNKF 461


>gi|350422581|ref|XP_003493215.1| PREDICTED: CDKAL1-like protein-like [Bombus impatiens]
          Length = 540

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/396 (56%), Positives = 295/396 (74%), Gaps = 9/396 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           +PGT+TIY KT+GC+HN SDSEYMAGQL+A+GY LT+N  EAD+WL+N+CTVKSP++   
Sbjct: 56  VPGTQTIYTKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYEADLWLLNSCTVKSPAEDHF 115

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I   +   K +VVAGCVPQG+     L+G+S++GVQQIDRVVEVVEETLKG+ VR L
Sbjct: 116 RNEIEAGRKMGKHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFL 175

Query: 175 HRKKLP-------ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK         +L LPK+RRN  +EI+ IN GCL  CTYCKTKHARG LGSY  + +V
Sbjct: 176 QQKKEAGKKIGGASLRLPKIRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPDEIV 235

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R      +GV E+WL+SEDTG YGRDIG +LP LL A+V ++ PDG   +R+GMTNPP+
Sbjct: 236 ERAIQAFDEGVCELWLTSEDTGTYGRDIGTSLPELLWALV-KVVPDGCR-VRVGMTNPPY 293

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILE+L+E++++L HP VYSFLH+PVQSGSD VL+ M REYT  DF  VV+ L E VP + 
Sbjct: 294 ILEYLEEMSKILSHPKVYSFLHIPVQSGSDQVLADMKREYTRGDFERVVNFLRERVPELT 353

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFP ET++DF +T+ L ++YKFP + ++QF+PRPGTPAARM ++P+ +VK R+
Sbjct: 354 IATDIICGFPTETEQDFEETMKLCEKYKFPSLFVNQFFPRPGTPAARMTRIPTQIVKNRT 413

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           + L+  F+++ PY    G V+ + +TEI+ D  H V
Sbjct: 414 KRLSEFFQSYFPYFDRIGLVQEVLVTEISHDRKHYV 449


>gi|19922432|ref|NP_611207.1| CG6550 [Drosophila melanogaster]
 gi|122087244|sp|Q7K4W1.1|CDKAL_DROME RecName: Full=Threonylcarbamoyladenosine tRNA
           methylthiotransferase; AltName: Full=CDKAL1-like
           protein; AltName: Full=tRNA-t(6)A37
           methylthiotransferase
 gi|7302795|gb|AAF57870.1| CG6550 [Drosophila melanogaster]
 gi|15291579|gb|AAK93058.1| GH28477p [Drosophila melanogaster]
 gi|220945770|gb|ACL85428.1| CG6550-PA [synthetic construct]
          Length = 552

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/397 (57%), Positives = 289/397 (72%), Gaps = 11/397 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+   EEAD+WL+N+CTVK+PS+   
Sbjct: 67  IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GKEEADLWLLNSCTVKNPSEDTF 125

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I       K +VVAGCVPQG+     L G+S++GVQQIDRVVEVVEETLKGH V+LL
Sbjct: 126 RNEIESGMRNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGHSVQLL 185

Query: 175 HRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
             KK           L LPKVR+N  +EI+ IN GCL  CTYCKTKHARG L SY  E +
Sbjct: 186 QNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEV 245

Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
           V R R   A+G  E+WL+SEDTGAYGRDIG +LP LL  +V  +P     MLR+GMTNPP
Sbjct: 246 VERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPP 303

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
           +ILEHL+E+A VL+HP VYSFLHVPVQSGSD+VL  M REY   DF  VVD L E VPG+
Sbjct: 304 YILEHLEEVANVLQHPRVYSFLHVPVQSGSDSVLGEMKREYCRQDFEHVVDFLRERVPGV 363

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406
            IATDIICGFP ET++DF +T+ L  +Y+FP + I+QF+PRPGTPAA+M ++P+ +VKKR
Sbjct: 364 TIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQFFPRPGTPAAKMDRIPANLVKKR 423

Query: 407 SRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           ++ LT +F ++ PY    G +  + +TE++ D +H V
Sbjct: 424 TKRLTDLFYSYEPYADRVGEIYTVLVTEVSHDKLHYV 460


>gi|391334616|ref|XP_003741698.1| PREDICTED: threonylcarbamoyladenosine tRNA
           methylthiotransferase-like [Metaseiulus occidentalis]
          Length = 521

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 237/455 (52%), Positives = 310/455 (68%), Gaps = 21/455 (4%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           ++DIEDL  G+     P G  +P   +   P   K+K   H +           +PG + 
Sbjct: 14  VDDIEDLDFGNFPRPEPRGQVVP-KIIRKAP--TKDKEEFHGDSF---------VPGHQK 61

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY+KT+GCSHN SDSEYM G LSA GY +  N +EA +WL+N+CTVK+PS+  +   I  
Sbjct: 62  IYVKTWGCSHNSSDSEYMGGMLSAAGYPIVSNKDEASLWLLNSCTVKNPSEEHLKNSIRS 121

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
             S  K +VV GCV Q     + L+G+SIVG  QIDRVVEVVEETLKG+ VRLL  K + 
Sbjct: 122 ALSQNKKVVVTGCVSQAEPKAEFLQGLSIVGTHQIDRVVEVVEETLKGNSVRLLGAKSVK 181

Query: 181 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
                   L LPK+R+N  VEIL IN GCL  CTYCKTK ARG+LGSY +E +V R +  
Sbjct: 182 GKKQGGAKLSLPKIRKNPLVEILAINTGCLNHCTYCKTKMARGNLGSYPIEDIVERCKQS 241

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
             +GVKE+W++SEDTGAYGRDIG+ LP LL  +V  +P      LR+GMTNPP+I++HL+
Sbjct: 242 FQEGVKEIWMTSEDTGAYGRDIGLTLPELLREVVKVIPE--GCYLRLGMTNPPYIMDHLE 299

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           ++AE+L HP VYSFLH+PVQSGSD VL  M REYT   F  VVD L + VPG+ IATDII
Sbjct: 300 DMAEILSHPRVYSFLHIPVQSGSDPVLKEMRREYTREQFCQVVDFLRDRVPGITIATDII 359

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFP ET+EDF+ T++L  +Y+FP ++I+QFYPRPGTPAA++K++P+ +VK R+R LT +
Sbjct: 360 CGFPTETEEDFDDTMSLCAKYEFPSLYINQFYPRPGTPAAKLKRIPTEIVKHRTRRLTQL 419

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           F++++PY    G+   I +TEIAAD  HLV   +F
Sbjct: 420 FDSYSPYKDRIGKEYDILVTEIAADKTHLVGHNKF 454


>gi|340723640|ref|XP_003400197.1| PREDICTED: CDKAL1-like protein-like [Bombus terrestris]
          Length = 540

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/396 (56%), Positives = 296/396 (74%), Gaps = 9/396 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           +PGT+TIY KT+GC+HN SDSEYMAGQL+A+GY LT+N  EAD+WL+N+CTVK+P++   
Sbjct: 56  VPGTQTIYTKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYEADLWLLNSCTVKNPAEDHF 115

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I   +   K +VVAGCVPQG+     L+G+S++GVQQIDRVVEVVEETLKG+ VR L
Sbjct: 116 RNEIEAGRKMGKHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFL 175

Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK         +L LPK+RRN  +EI+ IN GCL  CTYCKTKHARG LGSY  + +V
Sbjct: 176 QQKKEGGKKIGGASLRLPKIRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPDEIV 235

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R      +GV E+WL+SEDTG YGRDIG +LP LL  +V ++ PDG   +R+GMTNPP+
Sbjct: 236 ERAIQAFDEGVCELWLTSEDTGTYGRDIGTSLPELLWTLV-KVVPDGCR-IRVGMTNPPY 293

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E++++L HP VYSFLH+PVQSGSD VL+ M REYT +DF  VV+ L E VP + 
Sbjct: 294 ILEHLEEMSKILSHPKVYSFLHIPVQSGSDQVLADMKREYTRADFERVVNFLRERVPELT 353

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFP ET++DF +T+ L ++YKFP + ++QF+PRPGTPAARM K+P+ +VK R+
Sbjct: 354 IATDIICGFPTETEQDFEETMKLCEKYKFPSLFVNQFFPRPGTPAARMTKIPTQIVKNRT 413

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           + L+  F++++PY    G V+ + +TEI+ D  H V
Sbjct: 414 KRLSEFFQSYSPYFERIGLVQDVLVTEISHDRKHYV 449


>gi|291238003|ref|XP_002738926.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
           [Saccoglossus kowalevskii]
          Length = 544

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/401 (55%), Positives = 298/401 (74%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG +++Y+KT+GCSHN SDSEYMAGQL+++GY +T+  E AD+WL+N+CTVK+P++   
Sbjct: 46  IPGCQSVYVKTWGCSHNNSDSEYMAGQLASYGYKITETEEAADLWLLNSCTVKTPAEQHF 105

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ    L  + GVS+VGVQQIDR+VEVVEET KGH VRL 
Sbjct: 106 QNSIIKAREQNKYMVLAGCVPQAQPKLDYINGVSVVGVQQIDRIVEVVEETFKGHTVRLF 165

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          L+LPK+R+N  +EI+ IN GCL ACTYCKTK+ARG LGSY    LV
Sbjct: 166 GQKKKDGKKIGGAPLNLPKIRKNPLIEIIAINTGCLNACTYCKTKYARGELGSYQPSELV 225

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYG+DIGV +  LL  +V E+ PDG  M+RIGMTNPP+
Sbjct: 226 ARAKQSFEEGVCELWLTSEDTGAYGKDIGVTIVELLWQLV-EVIPDGC-MMRIGMTNPPY 283

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+EI+++L+HP VYSFLHVPVQSGSD+VL  M REY + DF+ V + L + VPG+ 
Sbjct: 284 ILEHLEEISKILKHPRVYSFLHVPVQSGSDSVLMDMKREYCVDDFKHVCNFLKKRVPGVT 343

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFP ETDEDF++T+ L++EYKFP + I+Q++PRPGTP+A+M +VP+  VKKR+
Sbjct: 344 IATDIICGFPTETDEDFDETMQLVEEYKFPSLFINQYFPRPGTPSAKMTRVPTREVKKRT 403

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ +F+ + PY    G  + + +TE + DG   V   +F
Sbjct: 404 KKLSQLFQDYRPYDHKVGEEQHVLVTEDSHDGRFYVAHNKF 444


>gi|431913258|gb|ELK14936.1| CDK5 regulatory subunit-associated protein 1-like 1 [Pteropus
           alecto]
          Length = 621

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/408 (54%), Positives = 298/408 (73%), Gaps = 16/408 (3%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+AFGY +T+N+ EAD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAFGYKITENASEADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+S++GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSVIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V ++ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-DVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD VL  M REY ++DF+ V D L E VPG+ 
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVADFLKEKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V+ +R 
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVIGERQ 416

Query: 408 REL-------TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           + L       +  + A   +    G  +++ +TE + D    V   +F
Sbjct: 417 QVLVTEESFDSKFYVAHNRFYEQIGERQQVLVTEESFDSKFYVAHNRF 464


>gi|194882251|ref|XP_001975226.1| GG22199 [Drosophila erecta]
 gi|190658413|gb|EDV55626.1| GG22199 [Drosophila erecta]
          Length = 557

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/397 (56%), Positives = 291/397 (73%), Gaps = 11/397 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+   EEAD+WL+N+CTVK+PS+   
Sbjct: 68  IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GKEEADLWLLNSCTVKNPSEDTF 126

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I       K +VVAGCVPQG+     L G+S++GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 127 RNEIKLGMRNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGNSVQLL 186

Query: 175 HRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
             KK           L LPKVR+N+ +EI+ IN GCL  CTYCKTKHARG L SY  E +
Sbjct: 187 QNKKKVHGRRVAGAPLSLPKVRKNQLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEV 246

Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
           V R R   A+G  E+WL+SEDTGAYGRDIG +LP LL  +V  +P     MLR+GMTNPP
Sbjct: 247 VERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPP 304

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
           +ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL  M REY   DF  VVD L E VPG+
Sbjct: 305 YILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRQDFEHVVDFLRERVPGV 364

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406
            IATDIICGFP ET+ DF +T+ L  +Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR
Sbjct: 365 TIATDIICGFPTETEADFEETMTLCAKYRFPSLFINQFFPRPGTPAAKMERIPANLVKKR 424

Query: 407 SRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           ++ LT +F ++ PY    G +  + +TE++ D +H V
Sbjct: 425 TKRLTDLFYSYEPYAKRVGEIYTVLVTEVSHDKLHYV 461


>gi|300192927|ref|NP_001177888.1| CDKAL1-like protein [Nasonia vitripennis]
          Length = 541

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/396 (55%), Positives = 290/396 (73%), Gaps = 9/396 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT+TIY+KT+GC+HN SDSEYMAGQLS +GY LT++   AD+W++N+CTVK+P++   
Sbjct: 57  IPGTQTIYIKTWGCTHNSSDSEYMAGQLSMYGYNLTEDKSIADLWILNSCTVKNPAEDHF 116

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I   +   K +VV+GCVPQG+     ++G+SI+GVQQIDRVVEVVEETLKG+ V+ L
Sbjct: 117 KNEINLARKLGKHIVVSGCVPQGAPKSNFIQGLSIIGVQQIDRVVEVVEETLKGNTVKFL 176

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           ++KK          L LPKVRRN  +EI+ IN GCL  CTYCKTKHARG LGSY  E ++
Sbjct: 177 NKKKEAGKKIGGAPLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYRPEEII 236

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R      DG+KE+WL+SEDTGAYG+DI  NLP LL  ++ ++ PD   M RIGMTNPP+
Sbjct: 237 DRAIQAFKDGIKELWLTSEDTGAYGKDIDTNLPELLWKLI-DVIPDKCRM-RIGMTNPPY 294

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+EI ++L+HP VYSFLH+PVQSGSD VL  M REY+ SDF  +VD L E +P + 
Sbjct: 295 ILEHLEEIGKILKHPKVYSFLHIPVQSGSDRVLFDMKREYSRSDFENIVDFLKEKIPNIN 354

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATD+ICGFP ET EDF +T++L ++YKF  + I+QF+PR GTPAA+M +VPS  +K R+
Sbjct: 355 IATDVICGFPTETSEDFEETMSLCQKYKFSTLFINQFFPRQGTPAAKMIQVPSKEIKNRT 414

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           + ++  F+++ PY    G ++ + +TEIA D  H V
Sbjct: 415 KLISEFFQSYEPYNTKIGEIQEVLVTEIAHDNKHYV 450


>gi|312384872|gb|EFR29498.1| hypothetical protein AND_01451 [Anopheles darlingi]
          Length = 526

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/406 (55%), Positives = 293/406 (72%), Gaps = 10/406 (2%)

Query: 51  LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
           L   IP T+ IYMKT+GC+HN SD+EYMAGQL+ +GY LT + + AD+W++N+CTVK+PS
Sbjct: 58  LESVIPETQQIYMKTWGCAHNTSDTEYMAGQLAQYGYNLTSDKKAADLWVLNSCTVKNPS 117

Query: 111 QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE 170
           +      I     A K +VVAGCVPQ +     L G+S+VGVQQIDRV EVVEETLKGH 
Sbjct: 118 EDTFRNEIEAAHRAGKHVVVAGCVPQAAPRSDYLHGLSVVGVQQIDRVAEVVEETLKGHS 177

Query: 171 VRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
           VRLL  KK+       P L LPKVR+N  +E++PIN GCL +CTYCKTK AR  L SY V
Sbjct: 178 VRLLQAKKVNGRKVAGPKLALPKVRKNPLIEVIPINSGCLNSCTYCKTKFARADLVSYPV 237

Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
           + +V R + V  +GV E+WL+SEDTG YGRDI  +LP LL  +V E+ P+G  M+R+GMT
Sbjct: 238 QEIVERAQQVFEEGVCEIWLTSEDTGTYGRDIDSSLPELLWKLV-EVIPEGC-MMRLGMT 295

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           NPP+ILEHL+E+A+VL HP VYSFLH+PVQSGSD +L  M REY + +F  VVD L E V
Sbjct: 296 NPPYILEHLEEMAKVLAHPRVYSFLHIPVQSGSDTILGEMKREYCVQEFERVVDFLREKV 355

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
           PG+ IATDIICGFPGET+ DF  TV L K+Y+FP + I+QF+PRPGTPAA+M++VP+  V
Sbjct: 356 PGITIATDIICGFPGETETDFQGTVALCKKYEFPSLFINQFFPRPGTPAAKMERVPANEV 415

Query: 404 KKRSRELTSVFEAFTPYLGME-GRVERIWITEIAADGIHLVRLEQF 448
           K R++ LT +F ++ PY     G ++ + +TEI+ D  H V   +F
Sbjct: 416 KTRTKRLTDLFHSYEPYKKYTPGTIQTVLVTEISHDRKHYVGHNKF 461


>gi|92096943|gb|AAI14872.1| CDKAL1 protein [Bos taurus]
          Length = 416

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 216/359 (60%), Positives = 281/359 (78%), Gaps = 9/359 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD VL  M REY ++DF+ VVD L + VPG+ 
Sbjct: 297 ILEHLEEMAKILHHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKDKVPGIT 356

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406
           IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V KK+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKKK 415


>gi|355677418|gb|AER95991.1| CDK5 regulatory subunit associated protein 1-like 1 [Mustela
           putorius furo]
          Length = 411

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/409 (55%), Positives = 298/409 (72%), Gaps = 14/409 (3%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           +EDIED+++    G   P  R       V PK  K   + +    +   S S  IPG + 
Sbjct: 10  LEDIEDIVSQ---GDLKPQDRHSARK-HVVPKARKRNTQKYLQEENSPPSDS-TIPGIQK 64

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++      I K
Sbjct: 65  IWLRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK  
Sbjct: 125 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184

Query: 181 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
                   LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY +E LV R +  
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIEELVERAKQS 244

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
             +GV E+WL+SEDTGAYGRDIG NLP LL  +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           E+A++L HP VY+FLH+PVQS SD VL  M REY ++DF+ VVD L E VPG+ +ATDII
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGITLATDII 362

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
           CGFPGETD+DF +TV L++EY+FP + I+QFYPRPGTPAA+M +VP+ V
Sbjct: 363 CGFPGETDQDFQETVKLVEEYRFPSLFINQFYPRPGTPAAKMAQVPAQV 411


>gi|313226156|emb|CBY21299.1| unnamed protein product [Oikopleura dioica]
          Length = 1581

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/395 (55%), Positives = 291/395 (73%), Gaps = 12/395 (3%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSE--EADIWLINTCTVKSPSQSAMD 115
           + IY++T+GC+HN SDSEYMAGQL+  GY +  D+++  E D+WL+N+CTVK+P++    
Sbjct: 51  QKIYVRTWGCTHNTSDSEYMAGQLAEAGYDVKLDDAKRLECDLWLLNSCTVKAPAEDHFK 110

Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
             I   +    P+VVAGCVPQG+   K ++G+S +GVQQIDRVVEVVEETLKG+ V+LL 
Sbjct: 111 NAINAAQKVNIPVVVAGCVPQGAPSDKFVKGLSTIGVQQIDRVVEVVEETLKGNTVKLLG 170

Query: 176 RKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
            KK          L LPKVRRN  +EI+ IN GCL +CTYCKTKHARG L SY ++ +V 
Sbjct: 171 PKKRAGKRIGGADLGLPKVRRNALIEIISINTGCLNSCTYCKTKHARGDLASYPIDEIVA 230

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
           R       G+ EVWL+SEDTGAYGRDIG N+  LLNA+V  +P     M+RIGMTNPP+I
Sbjct: 231 RFEQAFEQGIVEVWLTSEDTGAYGRDIGTNIVELLNAVVKTIPE--GCMMRIGMTNPPYI 288

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           LEHL+ IA++L HP VYSFLHVPVQSGSDAVL++M REY   DF  VVDTL   VP   I
Sbjct: 289 LEHLEGIAKILNHPRVYSFLHVPVQSGSDAVLNSMRREYNREDFCKVVDTLRANVPDCNI 348

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
           ATDII GFP ET+EDF++T++L ++YKFP + ++QF+PRPGTPAA+ +++P  V+K+R++
Sbjct: 349 ATDIIAGFPTETEEDFDETISLCEKYKFPSLFMNQFFPRPGTPAAKWEQIPRQVIKERTK 408

Query: 409 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           +L++VF+++ P+ G EG    + ITE+A D + LV
Sbjct: 409 KLSNVFKSYLPFEGREGERHSVLITEMAHDKVSLV 443


>gi|195123861|ref|XP_002006420.1| GI21033 [Drosophila mojavensis]
 gi|193911488|gb|EDW10355.1| GI21033 [Drosophila mojavensis]
          Length = 554

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/396 (58%), Positives = 295/396 (74%), Gaps = 10/396 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT+ +Y+KT+GC+HN SDSEYMAGQL+A+GY L+ + +EAD+WL+N+CTVK+PS+   
Sbjct: 70  IPGTQKVYVKTWGCAHNNSDSEYMAGQLAAYGYNLS-SKDEADLWLLNSCTVKNPSEDTF 128

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I       K +VVAGCVPQG+     L G+SI+GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 129 RNEIESGMRNGKHVVVAGCVPQGAPKSDYLRGLSIIGVQQIDRVVEVVEETLKGHSVRLL 188

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
             KK+         L LPKVR+N  +EI+ IN GCL  CTYCKTKHARG L SY    +V
Sbjct: 189 QNKKVQGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPAEIV 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R R    +G  E+WL+SEDTGAYGRDIG +LP LL  +V  +P     MLR+GMTNPP+
Sbjct: 249 ERARQSFDEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPY 306

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL  M REY   DF  VVD L   VPG+ 
Sbjct: 307 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRSRVPGLT 366

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFP ET+EDF +T++L K+Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR+
Sbjct: 367 IATDIICGFPTETEEDFEETMSLCKKYQFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 426

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           + LT +F ++ PY G EG+V  + +TEI+ D +H V
Sbjct: 427 KRLTDLFYSYEPYAGREGQVYTVLVTEISHDKLHYV 462


>gi|241558622|ref|XP_002400268.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215499750|gb|EEC09244.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 460

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/401 (56%), Positives = 302/401 (75%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           +PGT  IY+KT+GC+HN SDSEYMAGQL+A GY++ +++  AD+WL+N+CTVK+P++   
Sbjct: 52  LPGTHKIYVKTWGCAHNSSDSEYMAGQLAAKGYSIVEDASSADLWLLNSCTVKNPAEDHF 111

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I       K +V AGCV Q + +++ L+G+S+VGVQQ DR+VEVVEETLKG+ VRLL
Sbjct: 112 RGAIDSGLRQGKKVVAAGCVSQATPNVEYLKGLSVVGVQQTDRIVEVVEETLKGNSVRLL 171

Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
             KK         AL LPK+RRN  VEI+ IN GCL  CTYCKTKHARG LGSY++E LV
Sbjct: 172 GSKKDGRRKAGGAALTLPKIRRNPLVEIIAINTGCLNHCTYCKTKHARGDLGSYSIEELV 231

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV+E+WL+SEDTGAYGRDIG  LP LL  +VA +P     MLR+GMTNPP+
Sbjct: 232 ARAKQAFQEGVREIWLTSEDTGAYGRDIGETLPDLLREMVAVVPE--GCMLRLGMTNPPY 289

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           IL++L+++AE+L HP VYSFLHVPVQSGSD VL+ M REYT + FR V+D L + VPG+ 
Sbjct: 290 ILDYLEDMAEILSHPRVYSFLHVPVQSGSDPVLAEMKREYTAAQFRIVIDFLRKAVPGIT 349

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFP ET+EDF +T+ L++EY+FP + I+QFYPRPGTPAA+MK++P+ VVK+R+
Sbjct: 350 IATDIICGFPTETEEDFEETMALVREYRFPSLFINQFYPRPGTPAAKMKRIPTHVVKERT 409

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           + L+ +F+++  Y G  G+ + + +TE+A D  HLV   +F
Sbjct: 410 KRLSELFQSYQTYDGRVGQRQAVLVTEVAHDKKHLVGHNKF 450


>gi|313220891|emb|CBY31727.1| unnamed protein product [Oikopleura dioica]
          Length = 1590

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/395 (55%), Positives = 290/395 (73%), Gaps = 12/395 (3%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSE--EADIWLINTCTVKSPSQSAMD 115
           + IY++T+GC+HN SDSEYMAGQL+  GY +  D+++  E D+WL+N+CTVK+P++    
Sbjct: 51  QKIYVRTWGCTHNTSDSEYMAGQLAEAGYDVKLDDAKRLECDLWLLNSCTVKAPAEDHFK 110

Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
             I        P+VVAGCVPQG+   K ++G+S +GVQQIDRVVEVVEETLKG+ V+LL 
Sbjct: 111 NAINAAHKVNIPVVVAGCVPQGAPSDKFVKGLSTIGVQQIDRVVEVVEETLKGNTVKLLG 170

Query: 176 RKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
            KK          L LPKVRRN  +EI+ IN GCL +CTYCKTKHARG L SY ++ +V 
Sbjct: 171 PKKRAGKRIGGADLGLPKVRRNALIEIISINTGCLNSCTYCKTKHARGDLASYPIDEIVA 230

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
           R       G+ EVWL+SEDTGAYGRDIG N+  LLNA+V  +P     M+RIGMTNPP+I
Sbjct: 231 RFEQAFEQGIVEVWLTSEDTGAYGRDIGTNIVELLNAVVKTIPE--GCMMRIGMTNPPYI 288

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           LEHL+ IA++L HP VYSFLHVPVQSGSDAVL++M REY   DF  VVDTL   VP   I
Sbjct: 289 LEHLEGIAKILNHPRVYSFLHVPVQSGSDAVLNSMRREYNREDFCKVVDTLRANVPDCNI 348

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
           ATDII GFP ET+EDF++T++L ++YKFP + ++QF+PRPGTPAA+ +++P  V+K+R++
Sbjct: 349 ATDIIAGFPTETEEDFDETISLCEKYKFPSLFMNQFFPRPGTPAAKWEQIPRQVIKERTK 408

Query: 409 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           +L++VF+++ P+ G EG    + ITE+A D + LV
Sbjct: 409 KLSNVFKSYLPFEGREGERHSVLITEMAHDKVSLV 443


>gi|328718445|ref|XP_001945556.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
           [Acyrthosiphon pisum]
          Length = 522

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/448 (52%), Positives = 316/448 (70%), Gaps = 17/448 (3%)

Query: 3   DIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIY 62
           DIEDL++ S    A  G   P N V + PK  K KP     H         ++PGT+TI+
Sbjct: 8   DIEDLIS-SVADVAEIGRVKPRNIVSLRPKV-KVKPVREILHPPS------QVPGTQTIF 59

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
           +KT+GCSHN SD EYMAG LS +GY +T++   AD+W++N+CTVK+P++      I+  K
Sbjct: 60  IKTWGCSHNSSDGEYMAGLLSNYGYKITEDKAIADLWILNSCTVKNPAEDHFRNEISTGK 119

Query: 123 SAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA- 181
            + K +VVAGCVPQG +    ++ +S++GVQQIDRVVEVVEETLKGH +RLL +KK+   
Sbjct: 120 KSGKFVVVAGCVPQGDQKSPFIQNLSVIGVQQIDRVVEVVEETLKGHTIRLLGQKKINGK 179

Query: 182 ------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
                 L LPK+R+NK +EI+ I+ GCL  CTYCKTKHARG+LGSY  + +V R      
Sbjct: 180 KDGGARLQLPKMRKNKLIEIIAISTGCLNQCTYCKTKHARGNLGSYPPDEIVQRAIESFN 239

Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
           +G  E+WL+SEDTGAYG DI  NLP LL  +VA +P     M+RIGMTNPP+IL HL+EI
Sbjct: 240 EGAVELWLTSEDTGAYGLDIQTNLPELLWRLVAIIPE--GCMMRIGMTNPPYILNHLEEI 297

Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
           A++L HP VY+FLHVPVQSGS+ VL+ M REY++ +F TVV+ L + VPG+ IATDIICG
Sbjct: 298 AKILSHPRVYAFLHVPVQSGSNQVLADMKREYSIEEFETVVNFLRQRVPGVSIATDIICG 357

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
           FP ET+EDF++T+++ ++YKFP + I+QFYPR GTPAARM K+P+ +VK R++ LT +F 
Sbjct: 358 FPTETEEDFSETMSVCEKYKFPSLFINQFYPRKGTPAARMPKIPTDMVKIRTKRLTELFH 417

Query: 416 AFTPYLGMEGRVERIWITEIAADGIHLV 443
           ++T Y    G ++ I ITE A +GI  +
Sbjct: 418 SYTTYDHRIGEIQEILITEEAKNGIEFI 445


>gi|297677249|ref|XP_002816517.1| PREDICTED: LOW QUALITY PROTEIN: threonylcarbamoyladenosine tRNA
           methylthiotransferase, partial [Pongo abelii]
          Length = 577

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/401 (54%), Positives = 295/401 (73%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 60  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +VVAGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KG+ V  L
Sbjct: 120 RNSIKKAQEENKKIVVAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGYSVSHL 179

Query: 175 HRKKLPALDLPKVR-------RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            + K     L   R       +   V ++ +N  CL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 CKYKQNGARLHGARLRLKKKKKKCVVSLISLNTXCLNACTYCKTKHARGNLASYPIDELV 239

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG NLP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ 
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 357

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 358 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 417

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++L+ VF +++PY    G  +++ +TE + D    V   QF
Sbjct: 418 KDLSRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQF 458


>gi|339252460|ref|XP_003371453.1| putative radical SAM domain protein [Trichinella spiralis]
 gi|316968295|gb|EFV52591.1| putative radical SAM domain protein [Trichinella spiralis]
          Length = 542

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/393 (55%), Positives = 294/393 (74%), Gaps = 10/393 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG  ++Y+KT+GC+HN SDSEYMAG +S+ GY + D+   ADIWL+N+CTVK+PS+  +
Sbjct: 48  IPGAFSVYVKTWGCTHNSSDSEYMAGLMSSAGYGIVDDPSVADIWLLNSCTVKTPSEQHV 107

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              + K ++  KP++V+GCVPQ    +  L+GVS+VG+QQIDR+VEVVEETLKG+ V+LL
Sbjct: 108 QNELEKARALNKPVIVSGCVPQAEPSIPWLQGVSLVGIQQIDRIVEVVEETLKGNTVQLL 167

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           + KK+         LDLPKVRRN  VEI+ IN GCL  CTYCKTK ARG+L SY++E ++
Sbjct: 168 NYKKVKGKRTAGARLDLPKVRRNPLVEIIAINTGCLNNCTYCKTKKARGNLASYSIEEII 227

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R  + I++GVKE+WL+SED GAYGRDI   LP LL A+ A+LP DG  MLR+GMTNPPF
Sbjct: 228 DRAESCISEGVKEIWLTSEDLGAYGRDIDCTLPELLKALTAKLP-DG-VMLRLGMTNPPF 285

Query: 288 -ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
            I   ++EI E+L HPCVYSFLH+PVQSGSDAVL  M REY + DF  VV+ + + VPG+
Sbjct: 286 HIPISVQEIGEILNHPCVYSFLHIPVQSGSDAVLRDMRREYNVDDFCAVVEFMRKKVPGI 345

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406
            IATD+ICGFP ET++DF  T++L+++Y+F  + I+QFYPRPGTPAA++K++ +AVVK R
Sbjct: 346 TIATDVICGFPTETEQDFKDTLDLVEKYRFASLFINQFYPRPGTPAAKLKRLDTAVVKDR 405

Query: 407 SRELTSVFEAFTPYLGMEGRVERIWITEIAADG 439
           +R +T +F ++ PY    G   ++ ITE +  G
Sbjct: 406 TRRMTQLFNSYEPYRNRVGLKYQVLITERSFRG 438


>gi|427785609|gb|JAA58256.1| Putative cdk5 regulatory subunit associated protein 1-like 1
           [Rhipicephalus pulchellus]
          Length = 554

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/401 (56%), Positives = 297/401 (74%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           +PGT  I++KT+GC+HN SDSEYMAGQL+A GY + D++  AD+WL+N+CTVK+P++   
Sbjct: 51  LPGTHKIHVKTWGCAHNSSDSEYMAGQLAAKGYTIVDDARSADLWLLNSCTVKNPAEDHF 110

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I       K +VVAGCV Q + ++  L G+SIVGVQQ DRVVEVVEETLKG+ VRLL
Sbjct: 111 RGAIEAALHQGKKVVVAGCVSQATPNVGYLRGLSIVGVQQTDRVVEVVEETLKGNSVRLL 170

Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
             KK          L LPK+RRN  VEI+ IN GCL  CTYCKTKHARG LGSY ++ LV
Sbjct: 171 GSKKEGRRKAGGAPLTLPKIRRNPLVEIIAINTGCLNRCTYCKTKHARGDLGSYPIDELV 230

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV+E+WL+SEDTGAYGRDIGV LP LL  IV  +P     MLR+GMTNPP+
Sbjct: 231 ARAKQAFEEGVREIWLTSEDTGAYGRDIGVTLPDLLREIVQVIPE--GCMLRLGMTNPPY 288

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           IL+HL+++AE+L HP VYSFLHVPVQSGSD VL+ M REYT++ FR+VVD L + VPG+ 
Sbjct: 289 ILDHLEDMAEILNHPRVYSFLHVPVQSGSDPVLTEMRREYTVAQFRSVVDHLRKAVPGIT 348

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFP ET+EDF +T+ L+++Y+FP + I+QFYPRPGTPAA MK++P+ +VK+R+
Sbjct: 349 IATDIICGFPTETEEDFEETMQLVRDYEFPSLFINQFYPRPGTPAASMKRIPTHIVKERT 408

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++++ +F+++ PY    G    + +T+ A D  HLV   +F
Sbjct: 409 KQVSELFQSYVPYSHRVGERHTVLVTDTAHDQKHLVGHNKF 449


>gi|427797963|gb|JAA64433.1| Putative cdk5 regulatory subunit-associated protein 1-like 1,
           partial [Rhipicephalus pulchellus]
          Length = 550

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/401 (56%), Positives = 297/401 (74%), Gaps = 9/401 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           +PGT  I++KT+GC+HN SDSEYMAGQL+A GY + D++  AD+WL+N+CTVK+P++   
Sbjct: 87  LPGTHKIHVKTWGCAHNSSDSEYMAGQLAAKGYTIVDDARSADLWLLNSCTVKNPAEDHF 146

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I       K +VVAGCV Q + ++  L G+SIVGVQQ DRVVEVVEETLKG+ VRLL
Sbjct: 147 RGAIEAALHQGKKVVVAGCVSQATPNVGYLRGLSIVGVQQTDRVVEVVEETLKGNSVRLL 206

Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
             KK          L LPK+RRN  VEI+ IN GCL  CTYCKTKHARG LGSY ++ LV
Sbjct: 207 GSKKEGRRKAGGAPLTLPKIRRNPLVEIIAINTGCLNRCTYCKTKHARGDLGSYPIDELV 266

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV+E+WL+SEDTGAYGRDIGV LP LL  +V  +P     MLR+GMTNPP+
Sbjct: 267 ARAKQAFEEGVREIWLTSEDTGAYGRDIGVTLPDLLREMVQVIPE--GCMLRLGMTNPPY 324

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           IL+HL+++AE+L HP VYSFLHVPVQSGSD VL+ M REYT++ FR+VVD L + VPG+ 
Sbjct: 325 ILDHLEDMAEILNHPRVYSFLHVPVQSGSDPVLTEMRREYTVAQFRSVVDHLRKAVPGIT 384

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFP ET+EDF +T+ L+++Y+FP + I+QFYPRPGTPAA MK++P+ +VK+R+
Sbjct: 385 IATDIICGFPTETEEDFEETMQLVRDYEFPSLFINQFYPRPGTPAASMKRIPTHIVKERT 444

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++++ +F+++ PY    G    + +T+ A D  HLV   +F
Sbjct: 445 KQVSELFQSYVPYSHRVGERHTVLVTDTAHDQKHLVGHNKF 485


>gi|405952652|gb|EKC20438.1| hypothetical protein CGI_10006004 [Crassostrea gigas]
          Length = 536

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/365 (58%), Positives = 279/365 (76%), Gaps = 9/365 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT+ +++KT+GCSHN SDSEYMAGQL+++GY +TD+SE AD+WL+N+CTVK+P++   
Sbjct: 64  IPGTQKVWLKTWGCSHNNSDSEYMAGQLASYGYKITDDSESADLWLLNSCTVKNPAEDHF 123

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +  +K +VVAGCVPQG      L+G+S++GVQQIDRV EVVEETLKGH VRL 
Sbjct: 124 RNEIKKAREKQKKIVVAGCVPQGQPRTDYLQGLSVIGVQQIDRVTEVVEETLKGHSVRLY 183

Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KKL        AL LPK+R+N  +EI+ IN GCL  CTYCKTKHARG LGSY  + +V
Sbjct: 184 GQKKLEGKKVGGAALSLPKIRKNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPDEIV 243

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SED GAYG DIGV LP LL  +V E+ P+G+ M R+GMTNPP+
Sbjct: 244 ARAKQSFEEGVIEIWLTSEDLGAYGHDIGVTLPQLLWKLV-EVIPEGARM-RLGMTNPPY 301

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A++LRHP VYSFLHVPVQS SD+VL  M REY  +DFR V D L E VPG+ 
Sbjct: 302 ILEHLEEMAKILRHPRVYSFLHVPVQSASDSVLMDMKREYCQADFRHVTDFLKERVPGVT 361

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATD+ICGFP ET++DF +T+ L++EYKFP + I+QF+PRPGTPAA+M ++P+ ++ +  
Sbjct: 362 IATDVICGFPTETEDDFEETMKLVEEYKFPSLFINQFFPRPGTPAAKMPRIPAQLMSEIQ 421

Query: 408 RELTS 412
           + L +
Sbjct: 422 QVLVT 426


>gi|125807910|ref|XP_001360562.1| GA19679 [Drosophila pseudoobscura pseudoobscura]
 gi|121988829|sp|Q291H5.1|CDKAL_DROPS RecName: Full=Threonylcarbamoyladenosine tRNA
           methylthiotransferase; AltName: Full=CDKAL1-like
           protein; AltName: Full=tRNA-t(6)A37
           methylthiotransferase
 gi|54635734|gb|EAL25137.1| GA19679 [Drosophila pseudoobscura pseudoobscura]
          Length = 553

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/396 (57%), Positives = 292/396 (73%), Gaps = 10/396 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+   +EAD+WL+N+CTVK+PS+   
Sbjct: 68  IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GKDEADLWLLNSCTVKNPSEDTF 126

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I    S  K +VVAGCVPQG+     L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 127 RNEIESGMSNGKHIVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 186

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
             KK+         L LPKVR+N  +EI+ IN GCL  CTYCKTKHARG L SY  E +V
Sbjct: 187 QNKKVHGRRVAGAPLSLPKVRKNPLIEIISINTGCLNQCTYCKTKHARGDLASYPPEEIV 246

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R R   A+G  E+WL+SEDTGAYGRDIG +LP LL  +V  +P     MLR+GMTNPP+
Sbjct: 247 DRARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPE--HCMLRVGMTNPPY 304

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL  M REY   DF  VVD L E VPG+ 
Sbjct: 305 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRERVPGVT 364

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFP ET+EDF +T+ L   Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR+
Sbjct: 365 IATDIICGFPTETEEDFEETMTLCGRYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 424

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           + LT +F ++ PY    G +  + +TEI+ D +H V
Sbjct: 425 KRLTDLFYSYEPYAQRVGEMYTVLVTEISHDKLHYV 460


>gi|195150351|ref|XP_002016118.1| GL10666 [Drosophila persimilis]
 gi|194109965|gb|EDW32008.1| GL10666 [Drosophila persimilis]
          Length = 553

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/396 (57%), Positives = 292/396 (73%), Gaps = 10/396 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+   +EAD+WL+N+CTVK+PS+   
Sbjct: 68  IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GKDEADLWLLNSCTVKNPSEDTF 126

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I    S  K +VVAGCVPQG+     L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 127 RNEIESGMSNGKHVVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 186

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
             KK+         L LPKVR+N  +EI+ IN GCL  CTYCKTKHARG L SY  E +V
Sbjct: 187 QNKKVHGRRVAGAPLSLPKVRKNPLIEIISINTGCLNQCTYCKTKHARGDLASYPPEEIV 246

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R R   A+G  E+WL+SEDTGAYGRDIG +LP LL  +V  +P     MLR+GMTNPP+
Sbjct: 247 DRARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPE--HCMLRVGMTNPPY 304

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL  M REY   DF  VVD L E VPG+ 
Sbjct: 305 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRERVPGVT 364

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDIICGFP ET+EDF +T+ L   Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR+
Sbjct: 365 IATDIICGFPTETEEDFEETMTLCGRYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 424

Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           + LT +F ++ PY    G +  + +TEI+ D +H V
Sbjct: 425 KRLTDLFYSYEPYAQRVGEMYTVLVTEISHDKLHYV 460


>gi|357625033|gb|EHJ75587.1| hypothetical protein KGM_15103 [Danaus plexippus]
          Length = 538

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/406 (54%), Positives = 283/406 (69%), Gaps = 10/406 (2%)

Query: 51  LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
           L   +PGT+TIY+KT+GC+HN SDSEYMAG L+A GY LT++   A +WL+N+CTVKSP+
Sbjct: 53  LESVVPGTQTIYVKTWGCAHNNSDSEYMAGLLAAHGYKLTEDKFSAQLWLLNSCTVKSPA 112

Query: 111 QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE 170
           +      I   +     LV+AGCVPQG+     L G+S+VGV QIDR+VE+VEETLKGH 
Sbjct: 113 EDHFKNEIELAQKRGIHLVLAGCVPQGAPRSGYLAGLSVVGVHQIDRIVEIVEETLKGHT 172

Query: 171 VRLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
           VRL  +KK          +L LPKVR+N  +EI+PIN GCL  CTYCKTKHARG LGSY 
Sbjct: 173 VRLFGQKKTEEGRKAGGASLLLPKVRKNPLIEIIPINTGCLNQCTYCKTKHARGELGSYP 232

Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
            E +V R      +GV E+WL+SEDTG YGRDIG +LP LL  +VA +P      LR+GM
Sbjct: 233 PEEIVERATQSFKEGVCEIWLTSEDTGTYGRDIGTSLPYLLKQLVAVIPE--GCRLRLGM 290

Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
           TNPP+ILEHL E+AE++ HP VY FLHVPVQSGSD VL+ M REY+  DF  VVD L E 
Sbjct: 291 TNPPYILEHLAEVAEIMHHPRVYKFLHVPVQSGSDQVLADMKREYSRKDFERVVDYLAER 350

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
           VPG+ IATDIICGFP ETD DF  T+ L  +Y+F  + I+QF+PRPGTPAA M +VP   
Sbjct: 351 VPGITIATDIICGFPTETDADFEDTMQLCMKYRFSSLFINQFFPRPGTPAANMTRVPPQD 410

Query: 403 VKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           VKKR+++L+  F ++ PY    G ++ + +T+++ D  + V   +F
Sbjct: 411 VKKRTKKLSEFFRSYEPYGHKVGEIQEVLVTDVSHDKNYYVAHNEF 456


>gi|167533429|ref|XP_001748394.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773206|gb|EDQ86849.1| predicted protein [Monosiga brevicollis MX1]
          Length = 466

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/413 (52%), Positives = 286/413 (69%), Gaps = 25/413 (6%)

Query: 38  PRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEAD 97
           PR HD    +       IPG++TI+++T+GCSHN SD EYMAG LSA GY ++D  E AD
Sbjct: 30  PR-HDRSRREQAEGDSFIPGSKTIFLRTWGCSHNNSDGEYMAGLLSAAGYTISDKREGAD 88

Query: 98  IWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDR 157
           +W++N+CTVK+PS+   +  I   +S   P+V+AGCVPQ                 QIDR
Sbjct: 89  LWILNSCTVKTPSEDTFNNEIRDARSRNIPVVLAGCVPQ---------------TMQIDR 133

Query: 158 VVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCK 210
           VVEVVEETL+G  VRLL  KK+        ALDLPK+RRN  +EI+PIN GCL  CTYCK
Sbjct: 134 VVEVVEETLQGRTVRLLGSKKVDGRKTGGTALDLPKIRRNPLIEIIPINTGCLNKCTYCK 193

Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270
           TKHARG LGSYT++ +V RV+ VIA+GV E+WL+SEDTGAYGRDI  ++P LL AI+A +
Sbjct: 194 TKHARGDLGSYTIQEIVQRVQQVIAEGVVEIWLTSEDTGAYGRDINTSIPELLRAILAVV 253

Query: 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS 330
           P     M+R+GMTNPP+I+EH++ IAE LRHP +Y F+H+P+QSG++ +L AM REYT  
Sbjct: 254 P--AGVMVRLGMTNPPYIVEHVQAIAECLRHPRMYKFIHIPIQSGANPILHAMQREYTRE 311

Query: 331 DFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390
           DF  V DTL+E VP + IATDIICGFPGETD DF  T  +++ Y FP +  +QF+PRPGT
Sbjct: 312 DFCFVADTLLEQVPALTIATDIICGFPGETDADFEDTFEIVRRYHFPSLFTNQFFPRPGT 371

Query: 391 PAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           PAA M++V   +VK+R++EL+  F  +  Y       +R+ +T+ A D +H V
Sbjct: 372 PAAAMERVDPRLVKQRTKELSDYFRGYRVYDDQLDSYQRVLVTDTATDNVHFV 424


>gi|242021866|ref|XP_002431364.1| radical sam protein, putative [Pediculus humanus corporis]
 gi|212516632|gb|EEB18626.1| radical sam protein, putative [Pediculus humanus corporis]
          Length = 442

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/421 (54%), Positives = 299/421 (71%), Gaps = 20/421 (4%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           ++DIEDL+        P   ++   +  V  K    +P ++DN           IP +  
Sbjct: 8   VDDIEDLIVSRDSAPKPNRTKITYRSKKVK-KDEYVQPVIYDN----------PIPESHK 56

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY+KT+GC+HN SDSEYMAG LS++GY L ++ E AD+WL+N+CTVK+P++S     I K
Sbjct: 57  IYIKTWGCTHNSSDSEYMAGLLSSYGYNLVEDPEIADLWLLNSCTVKNPAESHFRNEIEK 116

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            +   K +V AGCVPQG+     ++ +SI+G+  IDRVVEVVEETLKGH VRLL +KK  
Sbjct: 117 GRKLGKHIVAAGCVPQGAPKQNYIQNLSIIGIHNIDRVVEVVEETLKGHSVRLLSQKKEN 176

Query: 181 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
                   L LPKVR+N ++EI+PI+ GCL  CTYCKTKHARG LGSY VE +V R +  
Sbjct: 177 GKKLGGANLLLPKVRKNPYIEIIPISTGCLNQCTYCKTKHARGELGSYPVEEIVERAKQA 236

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
            ++GV E+WL+SEDTGAYG+DIG +LP LL  +V E+ PD   M R+GMTNPP+ILEHL+
Sbjct: 237 FSEGVVELWLTSEDTGAYGKDIGASLPELLWKVV-EVIPDNCRM-RVGMTNPPYILEHLE 294

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           E+A++L H  VYSFLHVPVQSGSDAVLS M REYT+SDF+ VVD L   VPG+ IATDII
Sbjct: 295 EMAKILNHEKVYSFLHVPVQSGSDAVLSDMKREYTISDFKHVVDFLRLRVPGITIATDII 354

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFP ET++DF +T++L + YKFP + I+QFYPRPGTPAA+M KVP   VK+R+++L  +
Sbjct: 355 CGFPTETEKDFEETLSLCETYKFPSLFINQFYPRPGTPAAKMVKVPMHEVKQRTKKLADL 414

Query: 414 F 414
           F
Sbjct: 415 F 415


>gi|429329558|gb|AFZ81317.1| RNA modification enzyme, MiaB family domain-containing protein
           [Babesia equi]
          Length = 643

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/402 (52%), Positives = 294/402 (73%), Gaps = 4/402 (0%)

Query: 44  HLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT 103
           H  +T + +P IPG++T+Y + FGC+HN SDSEYM G LS +GY +TD+  +A + +IN+
Sbjct: 205 HEKETCNHTPLIPGSQTVYFRGFGCAHNSSDSEYMMGILSEYGYNITDDMSKAQVAVINS 264

Query: 104 CTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELE--GVSIVGVQQIDRVVEV 161
           CTVK PSQ AM T I K K  K P+VV GCVPQ  ++L  L+   VS++G  QIDR+VEV
Sbjct: 265 CTVKGPSQDAMATEIRKAKDLKIPIVVGGCVPQADKNLTPLKDPSVSLLGTSQIDRIVEV 324

Query: 162 VEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
           VE  L+G ++ LL RK LP+L+LPK+R+N+ +EI+P++ GCLG+CT+CKTK ARG LGSY
Sbjct: 325 VEHALQGRKLVLLERKTLPSLELPKIRQNELIEIIPLSTGCLGSCTFCKTKQARGVLGSY 384

Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
           T+ES++ RV + ++  V ++WL+SEDTGAYG DIG+++ +LL +I+  LPPD   MLR+G
Sbjct: 385 TLESILDRVESAVSQKVSQIWLTSEDTGAYGIDIGIDIVVLLKSILPLLPPD--VMLRLG 442

Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
           M+NPP+I  H++EIA++L+H  V+ F+H+PVQSGSD VL AMNREY + +F  +VD + E
Sbjct: 443 MSNPPYIKRHIEEIAKILKHKNVFEFIHIPVQSGSDRVLDAMNREYHIDEFLFLVDKIRE 502

Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
            VP   +ATDIICGFP ETDE+  +T+ L+K+ K P V+ISQFYPRPGTPAA+MK  P+ 
Sbjct: 503 SVPDCSLATDIICGFPTETDEEHLETIQLLKDLKLPIVNISQFYPRPGTPAAKMKAHPNK 562

Query: 402 VVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           V K R+RE+T VF ++       G+   +W ++      H +
Sbjct: 563 VAKSRTREVTEVFLSYECNSHYLGKTLPVWFSQTDVKRNHTI 604


>gi|195488757|ref|XP_002092449.1| GE14196 [Drosophila yakuba]
 gi|194178550|gb|EDW92161.1| GE14196 [Drosophila yakuba]
          Length = 552

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/397 (57%), Positives = 292/397 (73%), Gaps = 11/397 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+   EEAD+WL+N+CTVK+PS+   
Sbjct: 67  IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GKEEADLWLLNSCTVKNPSEDTF 125

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I       K +VVAGCVPQG+     L G+S++GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 126 RNEIESGMRNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGNSVQLL 185

Query: 175 HRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
             KK           L LPKVR+N+ +EI+ IN GCL  CTYCKTKHARG L SY  E +
Sbjct: 186 QNKKKVHGRRVAGAPLSLPKVRKNRLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEV 245

Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
           V R R   A+G  E+WL+SEDTGAYGRDIG +LP LL  +V  +P     MLR+GMTNPP
Sbjct: 246 VERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPP 303

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
           +ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL  M REY   DF  VVD L E VPG+
Sbjct: 304 YILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRQDFEHVVDFLRERVPGV 363

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406
            IATDIICGFP ET+EDF +T+ L  +Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR
Sbjct: 364 TIATDIICGFPTETEEDFEETMTLCAKYRFPSLFINQFFPRPGTPAAKMERIPANLVKKR 423

Query: 407 SRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           ++ LT +F ++ PY    G V  + +TE++ D +H V
Sbjct: 424 TKRLTDLFYSYEPYAERVGEVYTVLVTEVSHDKLHYV 460


>gi|170028512|ref|XP_001842139.1| aq_284 [Culex quinquefasciatus]
 gi|167876261|gb|EDS39644.1| aq_284 [Culex quinquefasciatus]
          Length = 555

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/407 (54%), Positives = 288/407 (70%), Gaps = 11/407 (2%)

Query: 51  LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
           L   IPGT+ IY+KT+GC+HN SDSEYMAGQL+++GY +T +  +A++WL+N+CTVK+PS
Sbjct: 59  LESVIPGTQRIYLKTWGCAHNSSDSEYMAGQLASYGYNITTDKTDANLWLLNSCTVKNPS 118

Query: 111 QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE 170
           +      I   +   K +V+AGCVPQ +   + + G+SIVGVQQ+DRV EVVEETLKGH 
Sbjct: 119 EDTFRNEILAAEKMGKHVVLAGCVPQAAPKSEYMHGLSIVGVQQLDRVTEVVEETLKGHS 178

Query: 171 VRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
           VRLL  KK+       P L LPKVR+N  +EI+PIN GCL  CTYCKTK AR  L SY V
Sbjct: 179 VRLLQPKKVNGKKVAGPNLALPKVRKNPLIEIIPINSGCLNTCTYCKTKFARADLISYPV 238

Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
           E ++ R   V  +GV E+WL+SEDTG YGRDIG +LP LL  +V E+ PD +  LR+GMT
Sbjct: 239 EEIIERATQVFQEGVCEIWLTSEDTGTYGRDIGSSLPELLWKLV-EVIPD-NCRLRLGMT 296

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           NPP+ILEHL E+A++L HP VY FLHVPVQSGSD+VL  M REY  +DF  + D L + V
Sbjct: 297 NPPYILEHLDEMAKILAHPKVYGFLHVPVQSGSDSVLGEMKREYCRADFERICDFLKQKV 356

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
           PG+ IATDIICGFP ET+ DF  T++L  +Y+FP + I+QFYPRPGTPAA+M+++P   V
Sbjct: 357 PGITIATDIICGFPTETEADFEHTMSLCAKYEFPSLFINQFYPRPGTPAAKMQRIPPDQV 416

Query: 404 KKRSRELTSVFEAFTPYLGME--GRVERIWITEIAADGIHLVRLEQF 448
           K R++ LT +F  + PY      G  + + +TEI+ D  H V   +F
Sbjct: 417 KTRTKRLTDLFYGYEPYAKKYTIGDRQTVLVTEISHDKKHYVGHNKF 463


>gi|348566232|ref|XP_003468906.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated
           protein 1-like 1-like [Cavia porcellus]
          Length = 613

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/442 (50%), Positives = 299/442 (67%), Gaps = 56/442 (12%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+NS EAD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENSSEADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLK-------------------------------- 142
              I         L + G VP G+R  +                                
Sbjct: 119 RNSINFF------LQIFGLVPAGNRHSQWYAQAPGISGPAEPVQPRLLGAGVCTDGWLSS 172

Query: 143 ---------ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-------LDLPK 186
                     L G++ V VQQIDRVVEVVEET+KGH VRLL +KK          LDLPK
Sbjct: 173 DSTGGERQEHLXGMAHVPVQQIDRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPK 232

Query: 187 VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSE 246
           +R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +    +GV E+WL+SE
Sbjct: 233 IRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSE 292

Query: 247 DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS 306
           DTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+
Sbjct: 293 DTGAYGRDIGTSLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYA 350

Query: 307 FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 366
           FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +
Sbjct: 351 FLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQE 410

Query: 367 TVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGR 426
           TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ +F ++ PY    G 
Sbjct: 411 TVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSQIFHSYNPYDHKIGE 470

Query: 427 VERIWITEIAADGIHLVRLEQF 448
            +++ +TE + D    V   +F
Sbjct: 471 KQQVLVTEESFDSKFYVAHNRF 492


>gi|115618009|ref|XP_792404.2| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
           [Strongylocentrotus purpuratus]
          Length = 556

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/432 (53%), Positives = 311/432 (71%), Gaps = 13/432 (3%)

Query: 25  NAVGVNPK-YNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLS 83
           N   V PK  N+ K R  +    K  S+   IPGT+ +++KT+GCSHN SD EYMAGQL+
Sbjct: 29  NKQDVMPKVLNRKKDRRKNGEDIKADSI---IPGTQKVFVKTWGCSHNNSDGEYMAGQLA 85

Query: 84  AFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKE 143
           ++GY++TD+S  AD+WL+N+CTVK+P++      I K +   K LV+AGCVPQG    K 
Sbjct: 86  SYGYSITDDSSGADVWLLNSCTVKNPAEDHFRNEIQKAQQQGKALVLAGCVPQGQPKAKY 145

Query: 144 LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEIL 196
           ++GVS++GVQQIDRVVEVVEET+KG+ VRL  +KK         +LDLPK+RRN  VEIL
Sbjct: 146 MQGVSVIGVQQIDRVVEVVEETVKGNTVRLFGQKKQGGKKIGGASLDLPKIRRNPLVEIL 205

Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
            IN GCL  CTYCKTKHARG LGSY  E LV R +    +GV E+WL+SEDTGAYG DIG
Sbjct: 206 AINTGCLNQCTYCKTKHARGELGSYPPEELVARAKQSFDEGVCEIWLTSEDTGAYGIDIG 265

Query: 257 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 316
           V +  LL+ +V E+ P+G  M+RIGMTNPP+IL+HL+ IA +LRHP VYSFLH+P+QSGS
Sbjct: 266 VTIVELLDQLV-EVIPEG-CMMRIGMTNPPYILDHLEGIARILRHPRVYSFLHIPIQSGS 323

Query: 317 DAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376
           D+VL  M REY  +DFR +V+ L + VP + IATDIICGFP E+++DF +T++LI+E+KF
Sbjct: 324 DSVLMDMKREYCTADFRKIVEFLRKEVPRVTIATDIICGFPHESEKDFEETLSLIEEFKF 383

Query: 377 PQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIA 436
           P V I+Q++PRPGTPAA+  +VP+   K+R++ LT +F+++  Y    G    + +TE++
Sbjct: 384 PSVFINQYFPRPGTPAAKWPQVPAQEKKRRTKALTVLFKSYQTYDDKVGERFDVLVTEVS 443

Query: 437 ADGIHLVRLEQF 448
            D  +LV   +F
Sbjct: 444 HDKQYLVAHNKF 455


>gi|427797957|gb|JAA64430.1| Putative cdk5 regulatory subunit associated protein 1-like 1,
           partial [Rhipicephalus pulchellus]
          Length = 541

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/428 (53%), Positives = 301/428 (70%), Gaps = 36/428 (8%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS-- 112
           +PGT  I++KT+GC+HN SDSEYMAGQL+A GY + D++  AD+WL+N+CTVK+P++   
Sbjct: 51  LPGTHKIHVKTWGCAHNSSDSEYMAGQLAAKGYTIVDDARSADLWLLNSCTVKNPAEDHF 110

Query: 113 ----------------------AMDTLIAKCKSA---KKPLVVAGCVPQGSRDLKELEGV 147
                                 A D      ++A    K +VVAGCV Q + ++  L G+
Sbjct: 111 RGAIEAALHQGKKVVVAGXXNPAEDHFRGAIEAALHQGKKVVVAGCVSQATPNVGYLRGL 170

Query: 148 SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINV 200
           SIVGVQQ DRVVEVVEETLKG+ VRLL  KK          L LPK+RRN  VEI+ IN 
Sbjct: 171 SIVGVQQTDRVVEVVEETLKGNSVRLLGSKKEGRRKAGGAPLTLPKIRRNPLVEIIAINT 230

Query: 201 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLP 260
           GCL  CTYCKTKHARG LGSY ++ LV R +    +GV+E+WL+SEDTGAYGRDIGV LP
Sbjct: 231 GCLNRCTYCKTKHARGDLGSYPIDELVARAKQAFEEGVREIWLTSEDTGAYGRDIGVTLP 290

Query: 261 ILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
            LL  +V  +P     MLR+GMTNPP+IL+HL+++AE+L HP VYSFLHVPVQSGSD VL
Sbjct: 291 DLLREMVQVIPE--GCMLRLGMTNPPYILDHLEDMAEILNHPRVYSFLHVPVQSGSDPVL 348

Query: 321 SAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVH 380
           + M REYT++ FR+VVD L + VPG+ IATDIICGFP ET+EDF +T+ L+++Y+FP + 
Sbjct: 349 TEMRREYTVAQFRSVVDHLRKAVPGITIATDIICGFPTETEEDFEETMQLVRDYEFPSLF 408

Query: 381 ISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGI 440
           I+QFYPRPGTPAA MK++P+ +VK+R+++++ +F+++ PY    G    + +T+ A D  
Sbjct: 409 INQFYPRPGTPAASMKRIPTHIVKERTKQVSELFQSYVPYSHRVGERHTVLVTDTAHDQK 468

Query: 441 HLVRLEQF 448
           HLV   +F
Sbjct: 469 HLVGHNKF 476


>gi|300176745|emb|CBK24410.2| unnamed protein product [Blastocystis hominis]
          Length = 507

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 202/378 (53%), Positives = 281/378 (74%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IP    +++ TFGC+HN +D EYM G LS +G+   +N +EA +W++N+CTVK PS+   
Sbjct: 48  IPEKYKLWIITFGCAHNFADGEYMKGILSDYGFQFAENRDEASLWVLNSCTVKDPSEIVF 107

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              + + K   K +VVAGCVPQ   D   L  +SI+GV+QI R+VEVVEETLKG+ + LL
Sbjct: 108 RNYVTEAKEKNKMVVVAGCVPQADSDASWLRDLSILGVKQIHRIVEVVEETLKGNTIHLL 167

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
             K+LP LDLPK+RR+  +EI+PI+ GCLG CTYCKT++ARG L SY ++S++ R+R   
Sbjct: 168 SLKELPPLDLPKIRRDPHIEIVPISEGCLGHCTYCKTQYARGKLMSYPLQSIINRLRAAF 227

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
            + V EVWLSSEDTGAYG D G+++  LL  I + +P   +TM+R+GMTNPP++L HLKE
Sbjct: 228 DEHVFEVWLSSEDTGAYGIDRGLSIADLLKEIPSVIPDQSNTMVRLGMTNPPYVLSHLKE 287

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           +A  LRHP V+SF+H+PVQSGS+AVL+ M R+YT+  F ++VD L++ VPG+ IATDII 
Sbjct: 288 VAAFLRHPNVFSFIHIPVQSGSNAVLNTMQRQYTVEQFTSIVDYLLKEVPGLTIATDIII 347

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           GF  ETDED  QT++L+K+Y+FP V+IS+F+PRPGTPAARMK + S++VK+RS E ++ F
Sbjct: 348 GFASETDEDHKQTMDLLKKYQFPVVNISKFFPRPGTPAARMKHISSSIVKERSSECSAWF 407

Query: 415 EAFTPYLGMEGRVERIWI 432
           ++  PY    G+VE +W+
Sbjct: 408 KSLNPYQHFLGKVELVWV 425


>gi|323100040|gb|ADX30521.1| MiaB-like protein 1 [Plutella xylostella]
          Length = 542

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/456 (50%), Positives = 298/456 (65%), Gaps = 16/456 (3%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           ++DIEDL+  S     P         V V  + N  K    ++   +   L   +PGT+T
Sbjct: 9   IDDIEDLI--SSQDITPKERYASRKNVSVRSRKNNTK----ESEPVEKVILQSVVPGTQT 62

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY+KT+GC+HN SDSEYM G L+A GY LTD+   A +WL+N+CTVK+P++      I  
Sbjct: 63  IYVKTWGCAHNNSDSEYMVGLLAAQGYQLTDDKWSAQLWLLNSCTVKNPAEEHFRNEIEL 122

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
            ++    +VVAGCVPQG+     L G+SIVGV QIDR+VE+VEETLKGH VRL  +KK  
Sbjct: 123 GQARGIHVVVAGCVPQGAPRAGYLAGLSIVGVHQIDRIVEIVEETLKGHTVRLFGQKKTD 182

Query: 180 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
                   +L LPKVR+N  +EI+ IN GCL  CTYCKTKHARG LGSY  E +V R R 
Sbjct: 183 DGKKAGGASLQLPKVRKNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERARQ 242

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
              +GV E+WL+SEDTG YGRDIG +LP LL+  VA +P      LR+GMTNPP++LEHL
Sbjct: 243 SFKEGVCEIWLTSEDTGTYGRDIGTSLPELLDQPVAAIP--AGCRLRLGMTNPPYMLEHL 300

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
             +A ++RH  VY FLHVPVQSGSD VL+ M REY+  DF  VVD L + VPG+ IATDI
Sbjct: 301 PRVAGIMRHSRVYKFLHVPVQSGSDQVLADMKREYSRKDFGYVVDYLRKEVPGITIATDI 360

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
           ICGFP ET  D   TV+L ++Y+FP + I+QF+ RPGTPAA M KVP   VKKR++EL+ 
Sbjct: 361 ICGFPTETAADHELTVSLCRQYRFPSLFINQFFARPGTPAANMTKVPGQEVKKRTKELSE 420

Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           +F ++ PY    G  + +  T+I+ D  + V   +F
Sbjct: 421 LFRSYEPYGHKVGETQEVLDTDISHDKKYFVGHNEF 456


>gi|426351722|ref|XP_004043378.1| PREDICTED: threonylcarbamoyladenosine tRNA
           methylthiotransferase-like, partial [Gorilla gorilla
           gorilla]
          Length = 440

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/364 (56%), Positives = 274/364 (75%), Gaps = 9/364 (2%)

Query: 92  NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVG 151
           N+ +AD+WL+N+CTVK+P++      I K +   K +V+AGCVPQ       L+G+SI+G
Sbjct: 1   NASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIG 60

Query: 152 VQQIDRVVEVVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKFVEILPINVGCLG 204
           VQQIDRVVEVVEET+KGH VRLL +KK          LDLPK+R+N  +EI+ IN GCL 
Sbjct: 61  VQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLN 120

Query: 205 ACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLN 264
           ACTYCKTKHARG+L SY ++ LV R +    +GV E+WL+SEDTGAYGRDIG NLP LL 
Sbjct: 121 ACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLW 180

Query: 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 324
            +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD++L  M 
Sbjct: 181 KLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSILMEMK 238

Query: 325 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384
           REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +TV L++EYKFP + I+QF
Sbjct: 239 REYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQF 298

Query: 385 YPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVR 444
           YPRPGTPAA+M++VP+ V K+R+++L+ VF +++PY    G  +++ +TE + D    V 
Sbjct: 299 YPRPGTPAAKMEQVPAQVKKQRTKDLSRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVA 358

Query: 445 LEQF 448
             QF
Sbjct: 359 HNQF 362


>gi|432908314|ref|XP_004077806.1| PREDICTED: threonylcarbamoyladenosine tRNA
           methylthiotransferase-like [Oryzias latipes]
          Length = 494

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/367 (56%), Positives = 271/367 (73%), Gaps = 9/367 (2%)

Query: 89  LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVS 148
           + D+  EAD+WL+N+CTVK+P++      I K +   K +VVAGCVPQ    +  L+ +S
Sbjct: 25  ILDDPAEADLWLLNSCTVKNPAEDHFRNSIKKAQEQDKKVVVAGCVPQAQPRMDYLKSLS 84

Query: 149 IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVG 201
           I+GVQQIDRVVEVV+E +KGH VRLL +KK          LDLPK+R+N  +EI+ IN G
Sbjct: 85  IIGVQQIDRVVEVVDEAVKGHSVRLLGQKKEGGRRLGGARLDLPKIRKNPLIEIISINTG 144

Query: 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI 261
           CL ACTYCKTKHARG L SY +E LV RVR    +GV E+WL+SEDTGAYGRDIG +LP 
Sbjct: 145 CLNACTYCKTKHARGDLASYPIEELVKRVRQSFQEGVCEIWLTSEDTGAYGRDIGTDLPT 204

Query: 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
           LL  +V ++P DG+ MLR+GMTNPP+ILEHL E+A++L HP VY+FLHVPVQS SD+VL 
Sbjct: 205 LLWRLVEQIP-DGA-MLRLGMTNPPYILEHLGEMAKILNHPRVYAFLHVPVQSASDSVLM 262

Query: 322 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
            M REY + DF+ VVD L E VPG+ IATDIICGFPGET+EDF +T+ L+K Y+FP + I
Sbjct: 263 DMKREYCIDDFKRVVDFLKERVPGVTIATDIICGFPGETEEDFQETLELVKLYRFPSLFI 322

Query: 382 SQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIH 441
           +QFYPRPGTPAA+M++VP+ V K+R+REL+ +F ++ PY    G ++ + +TE + D  +
Sbjct: 323 NQFYPRPGTPAAKMEQVPAQVKKQRTRELSQLFHSYNPYDHKVGEMQHVLVTEESFDAQY 382

Query: 442 LVRLEQF 448
            V   +F
Sbjct: 383 YVAHNKF 389


>gi|312076345|ref|XP_003140819.1| CDK5 regulatory subunit-associated protein 1-like 1 [Loa loa]
          Length = 478

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/445 (48%), Positives = 304/445 (68%), Gaps = 19/445 (4%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           MEDIED++        P    L  N V V  +   +    + +           +PGT+ 
Sbjct: 1   MEDIEDVIR------VPTAVNLRQNHVIVRKRLKGDGEPFYGDSF---------VPGTQK 45

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY++T+GC+HN SDSE MAG LS  G+ LT+  E+A +W++N+CTVK+PS++ ++  + +
Sbjct: 46  IYIRTWGCTHNTSDSEQMAGLLSEAGHQLTNKKEDASLWILNSCTVKTPSETQLENTVKE 105

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-HRKKL 179
            +   K ++VAGCV Q   +L+ LEG+SIVGV+QI+ V + VEETLKG+ VR L  RK  
Sbjct: 106 ARKLNKFIIVAGCVSQAEPNLRFLEGISIVGVKQIECVTQAVEETLKGNCVRFLSQRKPN 165

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
             L LPK+R+NKF+EIL I+ GCL  CTYCKTK ARG+L S+ ++SL+ R R   ADG K
Sbjct: 166 SNLLLPKIRKNKFIEILAISSGCLNHCTYCKTKSARGNLVSFPLDSLLERARNAFADGCK 225

Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
           E+WL+SED GA+GRDI + LP LLNA+V E+ P+G  MLR+GMTNPP+IL+ L+EI+E+L
Sbjct: 226 ELWLTSEDLGAWGRDIDMVLPDLLNALV-EIIPEG-CMLRLGMTNPPYILDFLEEISEIL 283

Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
            HP VYSFLH+PVQS SDAVL+ M REYT SDF  VVD + + VP + IATD IC +P E
Sbjct: 284 NHPRVYSFLHIPVQSASDAVLADMRREYTCSDFCRVVDYMTQNVPNIYIATDFICAYPTE 343

Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 419
           T  DF +++ L+++Y+FP + I+QFY R GTPAA +KK+ +   ++R+ E++++F +++ 
Sbjct: 344 TKSDFEESMALVRKYRFPSLFINQFYSRIGTPAANLKKIDTVEARRRTAEMSTLFRSYSR 403

Query: 420 YLGME-GRVERIWITEIAADGIHLV 443
           Y     G   R+ + E+A D  H V
Sbjct: 404 YDKKRIGEKHRVLVCELATDQQHYV 428


>gi|393907189|gb|EFO23252.2| MiaB-like tRNA modifying enzyme [Loa loa]
          Length = 465

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/445 (48%), Positives = 304/445 (68%), Gaps = 19/445 (4%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           MEDIED++        P    L  N V V  +   +    + +           +PGT+ 
Sbjct: 1   MEDIEDVIR------VPTAVNLRQNHVIVRKRLKGDGEPFYGDSF---------VPGTQK 45

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY++T+GC+HN SDSE MAG LS  G+ LT+  E+A +W++N+CTVK+PS++ ++  + +
Sbjct: 46  IYIRTWGCTHNTSDSEQMAGLLSEAGHQLTNKKEDASLWILNSCTVKTPSETQLENTVKE 105

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-HRKKL 179
            +   K ++VAGCV Q   +L+ LEG+SIVGV+QI+ V + VEETLKG+ VR L  RK  
Sbjct: 106 ARKLNKFIIVAGCVSQAEPNLRFLEGISIVGVKQIECVTQAVEETLKGNCVRFLSQRKPN 165

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
             L LPK+R+NKF+EIL I+ GCL  CTYCKTK ARG+L S+ ++SL+ R R   ADG K
Sbjct: 166 SNLLLPKIRKNKFIEILAISSGCLNHCTYCKTKSARGNLVSFPLDSLLERARNAFADGCK 225

Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
           E+WL+SED GA+GRDI + LP LLNA+V E+ P+G  MLR+GMTNPP+IL+ L+EI+E+L
Sbjct: 226 ELWLTSEDLGAWGRDIDMVLPDLLNALV-EIIPEGC-MLRLGMTNPPYILDFLEEISEIL 283

Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
            HP VYSFLH+PVQS SDAVL+ M REYT SDF  VVD + + VP + IATD IC +P E
Sbjct: 284 NHPRVYSFLHIPVQSASDAVLADMRREYTCSDFCRVVDYMTQNVPNIYIATDFICAYPTE 343

Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 419
           T  DF +++ L+++Y+FP + I+QFY R GTPAA +KK+ +   ++R+ E++++F +++ 
Sbjct: 344 TKSDFEESMALVRKYRFPSLFINQFYSRIGTPAANLKKIDTVEARRRTAEMSTLFRSYSR 403

Query: 420 YLGME-GRVERIWITEIAADGIHLV 443
           Y     G   R+ + E+A D  H V
Sbjct: 404 YDKKRIGEKHRVLVCELATDQQHYV 428


>gi|326429727|gb|EGD75297.1| cdk5 regulatory subunit associated protein 1 [Salpingoeca sp. ATCC
           50818]
          Length = 530

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/446 (48%), Positives = 303/446 (67%), Gaps = 18/446 (4%)

Query: 2   EDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETI 61
           ++IE+  AG  GG      RLP + V +     + K R+ +    + G  +  +PG   +
Sbjct: 3   DEIEEAAAGLVGGVRRT--RLPGDGVAI-----QQKRRVPEGDRVEQGKDAGFVPGCACV 55

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           Y++T+GCSHN SD EYMAG LSA GY +  +   AD+W++N+CTVK+PS+   +  I + 
Sbjct: 56  YIRTWGCSHNTSDGEYMAGVLSAAGYEIVKDKMTADLWILNSCTVKTPSEDTFNNAIREG 115

Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
           +   K LV+AGCV Q     K  +G+SIVG+ QIDRV+EVVEETL+G  VRLL +K   A
Sbjct: 116 QKLGKKLVLAGCVAQAQPRGKMTQGLSIVGIHQIDRVLEVVEETLQGRTVRLLSKKSSGA 175

Query: 182 ----LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
               L +PK+RRN+ +EI+PIN GCL  CTYCKTKHARG L SY  + +V RVR V+A+G
Sbjct: 176 GGAPLAMPKIRRNELIEIIPINTGCLNQCTYCKTKHARGQLNSYPADEIVARVRQVVAEG 235

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
           V E+WL+SEDTG YGRD    +  LL  I+ E+ PDG  MLR+GMTNPP+ILEHL+E+A+
Sbjct: 236 VVEIWLTSEDTGTYGRDRDDTIVNLLWKII-EVLPDG-VMLRVGMTNPPYILEHLEEMAK 293

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
           +L HP VY+FLH+P+Q+ SDAVL+ M REY   +F  +VD L E VP + IATDIICGFP
Sbjct: 294 ILNHPRVYAFLHIPIQAASDAVLTTMKREYNCEEFCHIVDFLRERVPNVTIATDIICGFP 353

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 417
           GET+EDF +T++L ++YKFP + I+Q +  P       +++  A VKKR++ L+ +F+++
Sbjct: 354 GETEEDFQETMDLCEKYKFPSLFINQAHLLPA-----WRELIPATVKKRTKRLSELFQSY 408

Query: 418 TPYLGMEGRVERIWITEIAADGIHLV 443
            PY    G+ +R+ +T+++ DG + V
Sbjct: 409 LPYEHKLGQRQRVLVTDVSTDGNYFV 434


>gi|342181579|emb|CCC91059.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 578

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/452 (48%), Positives = 304/452 (67%), Gaps = 28/452 (6%)

Query: 3   DIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIY 62
           DIED+   S   G+  G  +P+ +       N+ +  L +++        P IPG  T++
Sbjct: 47  DIEDVCC-SLSSGSMRGPSVPMIS-------NRRRRVLREDY-------GPGIPGNATVF 91

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
           + TFGC HN SD EYMAGQL+  G+ +TD   +ADI+L+N+CTVK+PS+     ++ + +
Sbjct: 92  VHTFGCGHNMSDGEYMAGQLAQSGFQITDEFSQADIYLLNSCTVKNPSEEHFVNMMNRVR 151

Query: 123 SAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-------- 174
           +  KPLVVAGCVPQ   D K+   VS++GV+ IDRV  VV ETL+G+ VRL+        
Sbjct: 152 ATGKPLVVAGCVPQADPDNKQWAEVSVIGVRSIDRVSYVVNETLQGNCVRLIGSDKEQLR 211

Query: 175 --HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
                KLPALDLPKVRRNK++EI+PI+VGCL  CTYCKTK+ARG L SY V  +VGRVR 
Sbjct: 212 VGESDKLPALDLPKVRRNKYIEIIPISVGCLNCCTYCKTKYARGDLRSYPVSEIVGRVRE 271

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS-TMLRIGMTNPPFILEH 291
           V+ DGVKE+ L+SED+GAYG DIG ++  LL A+ AEL  +GS  MLR+GM+NPP++L H
Sbjct: 272 VVDDGVKEIRLTSEDSGAYGIDIGTDIVQLLRAVAAEL--EGSDVMLRVGMSNPPYLLRH 329

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           + + A +LRHP VY F+H+PVQSGS+ +L  M REYT+ +F   +D +   VP + +ATD
Sbjct: 330 VDDFASILRHPNVYEFVHIPVQSGSNRILKTMLREYTVEEFCKCMDAIRTAVPRVTLATD 389

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
           IIC FPGE + ++ +T+ L +  KF  ++I++FYPR  TPAA MK++P+ + K+R+ ELT
Sbjct: 390 IICAFPGEGEAEWRETMRLCEVAKFGVINITRFYPRRNTPAAAMKQIPTDIAKQRTTELT 449

Query: 412 SVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           + F ++  Y  M G V ++ + E A D  HLV
Sbjct: 450 NFFNSYRTYDAMVGDVCQVTLLETAHDKHHLV 481


>gi|294900097|ref|XP_002776898.1| 2-methylthioadenine synthetase, putative [Perkinsus marinus ATCC
           50983]
 gi|239884099|gb|EER08714.1| 2-methylthioadenine synthetase, putative [Perkinsus marinus ATCC
           50983]
          Length = 554

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/395 (51%), Positives = 281/395 (71%), Gaps = 5/395 (1%)

Query: 46  SKTGSLSPKIPGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC 104
           S  GS    +PG  + I+ KTFGCSHN SDSEYM G LS +GY       +AD+ ++N+C
Sbjct: 110 SVVGSGDGNLPGAGQKIFFKTFGCSHNTSDSEYMMGLLSRYGYDFVGKIADADVVVLNSC 169

Query: 105 TVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEE 164
           TVK+PS+ A+ TL+   ++   P VV GCVPQ  R  + L   S+VG  QIDR+VEVVEE
Sbjct: 170 TVKNPSEDALATLVKAAEAEGLPTVVCGCVPQADRKSRALRNASLVGTSQIDRIVEVVEE 229

Query: 165 TLKGHEVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
           TL+G+ V LL  KKLP L +LPK+RRN  VEI+ +N GCLG C+YCKTK+ARG LGSY+ 
Sbjct: 230 TLRGNRVSLLQSKKLPELRELPKIRRNPLVEIVAVNTGCLGKCSYCKTKYARGSLGSYSK 289

Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
           E ++ RVRT +A+GV+++WL+SED GAYG DIG N+  LL  IV EL     +M+R+GMT
Sbjct: 290 EDIIARVRTALAEGVQQIWLTSEDLGAYGLDIGTNVAELLREIVGELEKYPDSMMRLGMT 349

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           NPP+IL+H +E+A++L HP V+ F+H+P+QSGS+ VL  M REYT+ DF  +V  L   V
Sbjct: 350 NPPYILQHAEEVAKILTHPQVFEFIHIPIQSGSNDVLRHMIREYTVEDFDRLVGILRARV 409

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402
           P + +ATD+ICGFP E++E+  +T+ LIK ++FP ++ISQFY RPGT AAR++ ++P  V
Sbjct: 410 PNLTVATDVICGFPTESEENHRETLELIKRHRFPVINISQFYARPGTAAARIRPRLPGKV 469

Query: 403 VKKRSRELTSVFEAF--TPYLGMEGRVERIWITEI 435
           +K+RS E+T++F ++  T  L   G V  +W  E+
Sbjct: 470 IKERSTEVTNLFMSYSLTDSLYDIGEVVEVWYDEV 504


>gi|324507132|gb|ADY43031.1| CDKAL1-like protein [Ascaris suum]
          Length = 535

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/394 (54%), Positives = 285/394 (72%), Gaps = 10/394 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           +PGTETI+++T+GCSHN SDSEYM G LS  GY +    E A +W++N+CTVK+PS+  +
Sbjct: 44  VPGTETIFVRTWGCSHNTSDSEYMTGLLSMAGYNIISTKENASLWVLNSCTVKTPSEDQL 103

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
           +  + K K AKK +VVAGCV Q   + + L GVS+VGV+QIDR+VEVVEETLKG+ VRLL
Sbjct: 104 ENEVKKAKEAKKFIVVAGCVSQADPNAEFLRGVSLVGVKQIDRIVEVVEETLKGNCVRLL 163

Query: 175 HRKK-LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
            RK+    L LPK+RRN  +E+L ++ GCL  CTYCKTK ARG L SY  E LV +    
Sbjct: 164 SRKRPEQKLSLPKMRRNNLIEVLAVSSGCLNNCTYCKTKQARGDLVSYPPEELVEQAVRA 223

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
            ++G +E+WL+SED GA+GRD G+ LP LL A+V ++ P+G  M+R+GMTNPP+IL+ L 
Sbjct: 224 FSEGCREIWLTSEDLGAWGRDFGMVLPDLLKAMV-DVIPEG-CMMRLGMTNPPYILDFLD 281

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           EIAE+L HP VYSFLH+PVQSGSDAVL  MNREY+ +DF  VVD +++ VP + IATD I
Sbjct: 282 EIAEILNHPRVYSFLHIPVQSGSDAVLRDMNREYSSADFCRVVDFMLQNVPNVYIATDFI 341

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           C FP ET EDF +++ L+  Y+FP V I+QFYPR GTPAAR+KK+ +   ++R+  ++S+
Sbjct: 342 CAFPTETIEDFEESMQLVHRYRFPSVFINQFYPRKGTPAARLKKITTTEARRRTAAMSSL 401

Query: 414 FEAFTPY----LGMEGRVERIWITEIAADGIHLV 443
           F ++T Y    LGME  V    + E A D +H V
Sbjct: 402 FRSYTRYGNDRLGMEYDV---LVCEWATDKVHFV 432


>gi|268535520|ref|XP_002632893.1| Hypothetical protein CBG15101 [Caenorhabditis briggsae]
          Length = 437

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/391 (52%), Positives = 285/391 (72%), Gaps = 6/391 (1%)

Query: 55  IPGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
           +PG  + ++++T+GCSHN SDSEYMAG L   GY +    E AD+W++N+CTVK+PS+  
Sbjct: 4   VPGVGQKVWVRTWGCSHNTSDSEYMAGLLHKAGYDVLKEGENADVWVLNSCTVKTPSEQQ 63

Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
            + L+ + +   K +++AGCV Q +     L+ VSIVGV+QIDR+VEVVEETLKG++VRL
Sbjct: 64  ANNLVVQGQEQGKKIIMAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVEETLKGNKVRL 123

Query: 174 LHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           L R +  AL  LPK+R+N+ +E+L I+ GCL  CTYCKTK ARG L SY +E LV + R 
Sbjct: 124 LTRNRPDALLSLPKMRKNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLEDLVEQARA 183

Query: 233 VIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
              D GVKE+WL+SED GA+GRDI + LP LLNA+V ++ PDG  M+R+GMTNPP+IL+H
Sbjct: 184 AFHDEGVKELWLTSEDLGAWGRDINLVLPDLLNALV-KVIPDGC-MMRLGMTNPPYILDH 241

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           L+EIAE+L +P VY+FLH+PVQS SDAVL+ M REY+   F  + D +IE VP + IATD
Sbjct: 242 LEEIAEILNNPKVYAFLHIPVQSASDAVLTDMKREYSRRHFEQIADYMIENVPNIYIATD 301

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
           +I  FP ET EDF +++ L+++YKFP + I+Q+YPR GTPAAR+KK+ +   +KR+  ++
Sbjct: 302 MILAFPTETLEDFEESMELVRKYKFPSLFINQYYPRSGTPAARLKKIDTVEARKRTAAMS 361

Query: 412 SVFEAFTPYLGME-GRVERIWITEIAADGIH 441
            +F ++T +     G +  + +TEIAAD IH
Sbjct: 362 ELFRSYTRFTEDRIGEIHNVLVTEIAADKIH 392


>gi|66475406|ref|XP_627519.1| 2-methylthioadenine synthetase; MiaB [Cryptosporidium parvum Iowa
           II]
 gi|32398737|emb|CAD98697.1| conserved hypothetical transmembrane protein [Cryptosporidium
           parvum]
 gi|46228975|gb|EAK89824.1| 2-methylthioadenine synthetase; MiaB [Cryptosporidium parvum Iowa
           II]
          Length = 543

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/408 (50%), Positives = 282/408 (69%), Gaps = 21/408 (5%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           +PG   I +K FGC+HN+SDSE M G LS +GY L +  +E ++ +IN+CTVK PSQ + 
Sbjct: 98  VPGVAKIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEELDECNLIVINSCTVKGPSQDSC 157

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
             LI   KS +K +VV GCVPQ   +L  L+ VSI+GV+ I R+VEVVE TL+G+ V L+
Sbjct: 158 QNLIELAKSKRKFVVVTGCVPQADINLNFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLI 217

Query: 175 HRK--------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
             K               LP L LPK+RRN FVEI+ I+VGCLG CTYCKTKH+RG LGS
Sbjct: 218 PDKMEGKSGQLIDSLEISLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTKHSRGDLGS 277

Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
           Y VE+++ R+   + +GVK+ WL+SED GAYG+DIG NL  LL  I+  LP D   M+RI
Sbjct: 278 YPVETIIQRINQSLNEGVKQFWLTSEDIGAYGKDIGTNLSELLREILKILPQD--IMIRI 335

Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
           GMTNPP+IL+ + EI ++++HP V+ FLH+PVQSGS+ +L  M R+Y + +F  +VD+++
Sbjct: 336 GMTNPPYILDQIDEIIDIMKHPNVFEFLHIPVQSGSNRILDLMKRDYVIEEFSLLVDSIL 395

Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 400
           + +P   IATDIICGFPGE+D+D  Q+V LI +YKFP ++IS+FYPRPGTPAA+MK VP+
Sbjct: 396 KEIPLATIATDIICGFPGESDQDHFQSVELINKYKFPVINISKFYPRPGTPAAKMKPVPN 455

Query: 401 AVVKKRSRELTSVFEAF--TPYLGM---EGRVERIWITEIAADGIHLV 443
            V K RS E+T+ F++F    Y+     + +V ++W  E +    H V
Sbjct: 456 GVSKSRSSEITNTFQSFNHNEYIFENLPDDKVVKVWFIEHSERSNHTV 503


>gi|323509405|dbj|BAJ77595.1| cgd6_1520 [Cryptosporidium parvum]
          Length = 493

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/378 (52%), Positives = 270/378 (71%), Gaps = 16/378 (4%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           +PG   I +K FGC+HN+SDSE M G LS +GY L +  +E ++ +IN+CTVK PSQ + 
Sbjct: 98  VPGVAKIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEELDECNLIVINSCTVKGPSQDSC 157

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
             LI   KS +K +VV GCVPQ   +L  L+ VSI+GV+ I R+VEVVE TL+G+ V L+
Sbjct: 158 QNLIELAKSKRKFVVVTGCVPQADINLNFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLI 217

Query: 175 HRK--------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
             K               LP L LPK+RRN FVEI+ I+VGCLG CTYCKTKH+RG LGS
Sbjct: 218 PDKMEGKSGQLIDSLEISLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTKHSRGDLGS 277

Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
           Y VE+++ R+   + +GVK+ WL+SED GAYG+DIG NL  LL  I+  LP D   M+RI
Sbjct: 278 YPVETIIQRINQSLNEGVKQFWLTSEDIGAYGKDIGTNLSELLREILKILPQD--IMIRI 335

Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
           GMTNPP+IL+ + EI ++++HP V+ FLH+PVQSGS+ +L  M R+Y + +F  +VD+++
Sbjct: 336 GMTNPPYILDQIDEIIDIMKHPNVFEFLHIPVQSGSNRILDLMKRDYVIEEFSLLVDSIL 395

Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 400
           + +P   IATDIICGFPGE+D+D  Q+V LI +YKFP ++IS+FYPRPGTPAA+MK VP+
Sbjct: 396 KEIPLATIATDIICGFPGESDQDHFQSVELINKYKFPVINISKFYPRPGTPAAKMKPVPN 455

Query: 401 AVVKKRSRELTSVFEAFT 418
            V K RS E+T+ F++F 
Sbjct: 456 GVSKSRSSEITNTFQSFN 473


>gi|261328871|emb|CBH11849.1| tRNA modification enzyme, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 535

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/402 (51%), Positives = 277/402 (68%), Gaps = 13/402 (3%)

Query: 53  PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
           P IPG  TI++ TFGC HN SD EYMAGQL   GY +TD   +AD +L+N+CTVK+PS+ 
Sbjct: 45  PGIPGNATIFVHTFGCGHNVSDGEYMAGQLVESGYNVTDEFGQADAYLLNSCTVKNPSEE 104

Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
              +++ + +   KPL+VAGCVPQ     K+   VS+VGV+ IDRV  VV+E L+G+ VR
Sbjct: 105 HFVSMMNRVRDTGKPLIVAGCVPQADPTNKQWGDVSVVGVRSIDRVSYVVQEALQGNCVR 164

Query: 173 LL----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
           LL             +LPALDLPKVRRNK++EI+PI+VGCL  CTYCKTK ARG L SY 
Sbjct: 165 LLGETEDQRQSNDSNELPALDLPKVRRNKYIEIIPISVGCLNNCTYCKTKQARGDLRSYP 224

Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS-TMLRIG 281
           VE +V RVR V+ DGVKE+ L+SED+GAYG DIG ++  LL A+  EL  +G+  MLR+G
Sbjct: 225 VEVIVDRVREVVRDGVKEIRLTSEDSGAYGIDIGTDVVYLLQAVAVEL--EGTDVMLRVG 282

Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
           M+NPP++L H+   A VL+HP VY F+H+PVQSGSD++L  M REYT+ +F   +D++  
Sbjct: 283 MSNPPYLLRHVDGFATVLKHPNVYEFVHIPVQSGSDSILQTMLREYTVEEFFMCIDSIRA 342

Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
            VP   +ATDIIC FPGE + ++ +T+ L K  KF  ++I++FYPR  TPAA MK++P+ 
Sbjct: 343 AVPKATVATDIICAFPGEGESEWQETMELCKRAKFEVINITRFYPRRNTPAAAMKQIPTD 402

Query: 402 VVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           V K R+ ELT+ F ++  +  M G V  + + E A D  HLV
Sbjct: 403 VAKHRTTELTNFFNSYRTFDSMVGEVHNVTLLETAHDKHHLV 444


>gi|67623743|ref|XP_668154.1| transmembrane protein [Cryptosporidium hominis TU502]
 gi|54659343|gb|EAL37924.1| transmembrane protein [Cryptosporidium hominis]
          Length = 543

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/408 (50%), Positives = 282/408 (69%), Gaps = 21/408 (5%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           +PG   I +K FGC+HN+SDSE M G LS +GY L +  +E ++ +IN+CTVK PSQ + 
Sbjct: 98  VPGIAKIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEELDECNLIVINSCTVKGPSQDSC 157

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
             LI   KS +K +VV GCVPQ   +L  L+ VSI+GV+ I R+VEVVE TL+G+ V L+
Sbjct: 158 QNLIELAKSKRKFVVVTGCVPQADINLNFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLI 217

Query: 175 HRK--------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
             K               LP L LPK+RRN FVEI+ I+VGCLG CTYCKTK +RG LGS
Sbjct: 218 PDKMEGKSGQLIDSLEMSLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTKQSRGDLGS 277

Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
           Y +E+++ R+   + +GVK+ WL+SED GAYG+DIG NL  LL  I+  LP D   M+RI
Sbjct: 278 YPIETIIQRINQSLNEGVKQFWLTSEDIGAYGKDIGTNLSELLREILKILPQD--IMIRI 335

Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
           GMTNPP+IL+ + EI ++++HP V+ FLH+PVQSGS+ +L  M R+Y + +F  +VD+++
Sbjct: 336 GMTNPPYILDQIDEIIDIMKHPNVFEFLHIPVQSGSNRILDLMKRDYVIEEFSLLVDSIL 395

Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 400
           + +P   IATDIICGFPGE+D+D  Q+V LI +YKFP ++IS+FYPRPGTPAA+MK VP+
Sbjct: 396 KEIPLATIATDIICGFPGESDQDHFQSVELINKYKFPVINISKFYPRPGTPAAKMKPVPN 455

Query: 401 AVVKKRSRELTSVFEAF--TPYLGM---EGRVERIWITEIAADGIHLV 443
            V K RS E+T++F++F    Y+     + +V ++W  E +    H V
Sbjct: 456 GVSKGRSSEITNIFQSFNHNEYIFENLPDDKVVKVWFIEHSERSNHTV 503


>gi|308497879|ref|XP_003111126.1| hypothetical protein CRE_03881 [Caenorhabditis remanei]
 gi|308240674|gb|EFO84626.1| hypothetical protein CRE_03881 [Caenorhabditis remanei]
          Length = 560

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/455 (47%), Positives = 305/455 (67%), Gaps = 30/455 (6%)

Query: 3   DIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT-ETI 61
           DIED++ G G  G+     + I      PK  ++ P           ++   +PG  + +
Sbjct: 2   DIEDIV-GRGPVGSRDAAEIKIRTRKQLPKEKEDVP-----------NVDSMVPGVGQKV 49

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GCSHN SDSEYMAG L   GY +    E AD+W++N+CTVK+PS+   + L+ + 
Sbjct: 50  WVRTWGCSHNTSDSEYMAGLLQQAGYDVLKEGEAADVWILNSCTVKTPSEQQANNLVVQG 109

Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV---------- 171
           +   K +++AGCV Q +     L+ VSIVGV+QIDR+VEVVEETLKG++V          
Sbjct: 110 QEQGKKIIMAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVEETLKGNKVLPTILRTSRL 169

Query: 172 --RLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             RLL R +  AL  LPK+R+N+ +E+L I+ GCL  CTYCKTK ARG L SY +E LV 
Sbjct: 170 HVRLLTRNRPDALLSLPKMRKNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLEDLVE 229

Query: 229 RVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
           + R    D GVKE+WL+SED GA+GRDI + LP LLNA+V ++ PDGS M+R+GMTNPP+
Sbjct: 230 QARAAFHDEGVKELWLTSEDLGAWGRDINLVLPDLLNALV-KVIPDGS-MMRLGMTNPPY 287

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           IL+HL+EIAE+L HP VY+FLH+PVQS SDAVL+ M REY+   F  + D +I+ VP + 
Sbjct: 288 ILDHLEEIAEILNHPKVYAFLHIPVQSASDAVLTDMKREYSRRHFEQIADYMIKHVPNIY 347

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATD+I  FP ET EDF +++ L+++YKFP + I+Q+YPR GTPAAR+KK+ +   +KR+
Sbjct: 348 IATDMILAFPTETLEDFEESMELVRKYKFPSLFINQYYPRSGTPAARLKKIDTIEARKRT 407

Query: 408 RELTSVFEAFTPYLGME-GRVERIWITEIAADGIH 441
             ++ +F ++T +     G +  + +TE+AAD +H
Sbjct: 408 AAMSELFRSYTRFTEDRIGEIHNVLVTEVAADKLH 442


>gi|119575831|gb|EAW55427.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_c
           [Homo sapiens]
          Length = 488

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/333 (58%), Positives = 257/333 (77%), Gaps = 9/333 (2%)

Query: 87  YALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEG 146
           + +T+N+ +AD+WL+N+CTVK+P++      I K +   K +V+AGCVPQ       L+G
Sbjct: 22  HQVTENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKG 81

Query: 147 VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKFVEILPIN 199
           +SI+GVQQIDRVVEVVEET+KGH VRLL +KK          LDLPK+R+N  +EI+ IN
Sbjct: 82  LSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISIN 141

Query: 200 VGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNL 259
            GCL ACTYCKTKHARG+L SY ++ LV R +    +GV E+WL+SEDTGAYGRDIG NL
Sbjct: 142 TGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNL 201

Query: 260 PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV 319
           P LL  +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD+V
Sbjct: 202 PTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSV 259

Query: 320 LSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQV 379
           L  M REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +TV L++EYKFP +
Sbjct: 260 LMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSL 319

Query: 380 HISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
            I+QFYPRPGTPAA+M++VP+ V+ +R + L +
Sbjct: 320 FINQFYPRPGTPAAKMEQVPAQVIGERQQVLVT 352


>gi|34535972|dbj|BAC87494.1| unnamed protein product [Homo sapiens]
          Length = 487

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/333 (58%), Positives = 257/333 (77%), Gaps = 9/333 (2%)

Query: 87  YALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEG 146
           + +T+N+ +AD+WL+N+CTVK+P++      I K +   K +V+AGCVPQ       L+G
Sbjct: 22  HQVTENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKG 81

Query: 147 VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKFVEILPIN 199
           +SI+GVQQIDRVVEVVEET+KGH VRLL +KK          LDLPK+R+N  +EI+ IN
Sbjct: 82  LSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISIN 141

Query: 200 VGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNL 259
            GCL ACTYCKTKHARG+L SY ++ LV R +    +GV E+WL+SEDTGAYGRDIG NL
Sbjct: 142 TGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNL 201

Query: 260 PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV 319
           P LL  +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD+V
Sbjct: 202 PTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSV 259

Query: 320 LSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQV 379
           L  M REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +TV L++EYKFP +
Sbjct: 260 LMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSL 319

Query: 380 HISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
            I+QFYPRPGTPAA+M++VP+ V+ +R + L +
Sbjct: 320 FINQFYPRPGTPAAKMEQVPAQVIGERQQVLVT 352


>gi|72390349|ref|XP_845469.1| tRNA modification enzyme [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|62359495|gb|AAX79931.1| tRNA modification enzyme, putative [Trypanosoma brucei]
 gi|70802004|gb|AAZ11910.1| tRNA modification enzyme, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
          Length = 535

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/402 (50%), Positives = 276/402 (68%), Gaps = 13/402 (3%)

Query: 53  PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
           P IPG  TI++ TFGC HN SD EYMAGQL   GY +TD   +AD +L+N+CTVK+PS+ 
Sbjct: 45  PGIPGNATIFVHTFGCGHNVSDGEYMAGQLVESGYNVTDEFGQADAYLLNSCTVKNPSEE 104

Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
              +++ + +   KPL+VAGCVPQ     K+   VS+VGV+ ID V  VV+E L+G+ VR
Sbjct: 105 HFVSMMNRVRDTGKPLIVAGCVPQADPTNKQWGDVSVVGVRSIDCVSYVVQEALQGNCVR 164

Query: 173 LL----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
           LL             +LPALDLPKVRRNK++EI+PI+VGCL  CTYCKTK ARG L SY 
Sbjct: 165 LLGETEDQRQSNESNELPALDLPKVRRNKYIEIIPISVGCLNNCTYCKTKQARGDLRSYP 224

Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS-TMLRIG 281
           VE +V RVR V+ DGVKE+ L+SED+GAYG DIG ++  LL A+  EL  +G+  MLR+G
Sbjct: 225 VEVIVDRVREVVRDGVKEIRLTSEDSGAYGIDIGTDVVYLLRAVAVEL--EGTDVMLRVG 282

Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
           M+NPP++L H+   A VL+HP VY F+H+PVQSGSD++L  M REYT+ +F   +D++  
Sbjct: 283 MSNPPYLLRHVDGFATVLKHPNVYEFVHIPVQSGSDSILQTMLREYTVEEFFMCIDSIRA 342

Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
            VP   +ATDIIC FPGE + ++ +T+ L K  KF  ++I++FYPR  TPAA MK++P+ 
Sbjct: 343 AVPKATVATDIICAFPGEGESEWQETMELCKRAKFEVINITRFYPRRNTPAAAMKQIPTD 402

Query: 402 VVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           V K R+ ELT+ F ++  +  M G V  + + E A D  HLV
Sbjct: 403 VAKHRTTELTNFFNSYRTFDSMVGEVHNVTLLETAHDKHHLV 444


>gi|449681850|ref|XP_002155994.2| PREDICTED: threonylcarbamoyladenosine tRNA
           methylthiotransferase-like [Hydra magnipapillata]
          Length = 474

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/360 (55%), Positives = 261/360 (72%), Gaps = 9/360 (2%)

Query: 96  ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQI 155
           AD+WL+N+CTVK+P++ +    I K +   K +V+AGCVPQG    + ++G+SIVGVQQI
Sbjct: 8   ADLWLLNSCTVKNPAEESFKNEIKKAQELNKYVVLAGCVPQGQPRGEFMKGLSIVGVQQI 67

Query: 156 DRVVEVVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTY 208
           DRVVEVVEETLKGH VRL  +KKL         L+LPK+R+N  +EI+ IN GCL  CTY
Sbjct: 68  DRVVEVVEETLKGHSVRLFGKKKLNGKKIGGAPLNLPKIRKNPLIEIIAINTGCLNQCTY 127

Query: 209 CKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268
           CKTKHARG LGSY  E +V RV+    +GV E+WL+SEDTGAYG+DIGV LP LL  I+ 
Sbjct: 128 CKTKHARGELGSYPPEEIVARVKQSFEEGVVEIWLTSEDTGAYGKDIGVTLPELLWQIIE 187

Query: 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 328
            +PP G  ++RIGMTNPP+I E+L E+A++L HP VYSFLH+PVQSGS+ VL  M REY 
Sbjct: 188 VIPPGG--LMRIGMTNPPYIKEYLDEMAKILNHPRVYSFLHIPVQSGSNNVLHDMKREYR 245

Query: 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
           + DF+  V+ L + VP + IATDIICGFP ET EDF  +  L++EY+FP + I+QF+PRP
Sbjct: 246 IEDFKNTVNFLKDRVPRLTIATDIICGFPTETLEDFADSCALVQEYQFPSLFINQFFPRP 305

Query: 389 GTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           GTPAA MK+VP+  VK+R+R ++ +F+++ PY    G  + I ITE A D +H V   +F
Sbjct: 306 GTPAANMKRVPTDEVKRRTRVISDIFQSYLPYENQLGEHQTILITENAKDAVHFVGHNKF 365


>gi|407851980|gb|EKG05664.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
          Length = 530

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/399 (49%), Positives = 276/399 (69%), Gaps = 11/399 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IP   T+++ TFGCSHN SD EYMAG L+  GY +TD   +AD++L+N+CTVK+PS+   
Sbjct: 45  IPSNATVFIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNDADVYLLNSCTVKNPSEEHF 104

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
            +++ + ++  KPLVVAGCVPQ      + + VS++GV+ IDRV EV+ E L+GH VRL+
Sbjct: 105 ISMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGHCVRLI 164

Query: 175 ----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
                        KLP LDLPK+RRN+F+EI+PI+VGCL  CTYCKTK ARG L S+ +E
Sbjct: 165 GVNEHANNKQDFNKLPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIE 224

Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
           S+V RVR+V+ +GVKE+ ++SED GAYG DI  ++  LL AIV E+      M+R+GM+N
Sbjct: 225 SIVLRVRSVLKEGVKEIRITSEDVGAYGIDIKTDIVCLLRAIVKEIQ-GTEVMMRVGMSN 283

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           PP++L HL + A +LRHP VY F+H+P+QSGS+ +L+AM REYTL +F   V  +  +VP
Sbjct: 284 PPYLLRHLDDFAAILRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEFHECVHRIRSVVP 343

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
            + +ATDIIC FPGE + ++ +T+ L    +FP ++I++FYPR  TPAA MK++P+ V K
Sbjct: 344 NVTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPAASMKQIPTDVAK 403

Query: 405 KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           +R+ ELT  F ++     M G V  + + E A D  HLV
Sbjct: 404 RRTSELTEFFNSYRTLDHMVGEVHSVALLETAHDKHHLV 442


>gi|71661088|ref|XP_817570.1| tRNA modification enzyme [Trypanosoma cruzi strain CL Brener]
 gi|70882770|gb|EAN95719.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
          Length = 530

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/399 (49%), Positives = 277/399 (69%), Gaps = 11/399 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IP   T+++ TFGCSHN SD EYMAG L+  GY +TD   +AD++L+N+CTVK+PS+   
Sbjct: 45  IPSNATVFIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNDADVYLLNSCTVKNPSEEHF 104

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
            +++ + ++  KPLVVAGCVPQ      + + VS++GV+ IDRV EV+ E L+GH VRL+
Sbjct: 105 ISMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGHCVRLI 164

Query: 175 ----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
                        KLP LDLPK+RRN+F+EI+PI+VGCL  CTYCKTK ARG L S+ +E
Sbjct: 165 GVNEHANNKQDFNKLPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIE 224

Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
           S+V RVR+V+ +GVKE+ ++SED GAYG DI  ++  LL AIV E+      M+R+GM+N
Sbjct: 225 SIVLRVRSVLKEGVKEIRITSEDVGAYGIDINTDIICLLRAIVKEIQ-GTEVMMRVGMSN 283

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           PP++L HL + A +LRHP VY F+H+P+QSGS+ +L+AM REYTL +F   V  +  +VP
Sbjct: 284 PPYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEFYECVHRIRSVVP 343

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
            + +ATDIIC FPGE + ++ +T+ L    +FP ++I++FYPR  TPAA MK++P+ V K
Sbjct: 344 NVTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPAASMKQIPTDVAK 403

Query: 405 KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           +R+ ELT+ F ++     M G V  + + E A D  HLV
Sbjct: 404 RRTSELTAFFNSYRTLDHMVGEVHSVALLETAHDKHHLV 442


>gi|209878518|ref|XP_002140700.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
 gi|209556306|gb|EEA06351.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
          Length = 548

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/382 (50%), Positives = 271/382 (70%), Gaps = 20/382 (5%)

Query: 54  KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
           K+PG   I M+ FGC+HN+SDSE M G L  +GY + +  ++ D+ +IN+CTVKSPS+ +
Sbjct: 83  KVPGIGRIMMRNFGCNHNRSDSESMNGLLVEYGYEIVNELDDCDLIVINSCTVKSPSEMS 142

Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
              L+    + KK +VV GC+PQ  R L  L+ VS++GV    R+VE+VE TL+G+ V +
Sbjct: 143 CRNLVETALNKKKFVVVTGCIPQAERTLPWLKNVSVLGVSYTHRIVEIVELTLQGNIVEM 202

Query: 174 LHRK------------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 215
           +                     +LP L+LPK+R+N  VEI+ ++VGCLG CTYCKTK++R
Sbjct: 203 ISMNSDLSAIGTTKKQDKATFSRLPPLNLPKIRKNPLVEIITVSVGCLGNCTYCKTKYSR 262

Query: 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275
           G+LGSYT+E+++ RV+T + +G+K++WL+SEDTGAYG+DIG NL  L+  I+  +PPD  
Sbjct: 263 GNLGSYTIETILNRVKTSLKEGIKQIWLTSEDTGAYGKDIGTNLSSLIYQILNIIPPD-- 320

Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
            M+RIGMTNPP+IL  ++++ EVL HP V+ FLH+PVQSGS+ VL+ M R+YT  DF  +
Sbjct: 321 VMIRIGMTNPPYILNQIQDMVEVLSHPNVFEFLHIPVQSGSNKVLTNMRRDYTREDFCKL 380

Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395
           VD +   +  + IATDIICGFPGET+ED   TV LIK+YKFP ++IS+FYPRPGTPAA+M
Sbjct: 381 VDEISSQLSLITIATDIICGFPGETEEDHQDTVELIKKYKFPVINISKFYPRPGTPAAKM 440

Query: 396 KKVPSAVVKKRSRELTSVFEAF 417
           K VP+ + K+RS E+T++  + 
Sbjct: 441 KAVPNGISKRRSLEITNILHSL 462


>gi|71664178|ref|XP_819072.1| tRNA modification enzyme [Trypanosoma cruzi strain CL Brener]
 gi|70884358|gb|EAN97221.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
          Length = 530

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/399 (48%), Positives = 275/399 (68%), Gaps = 11/399 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IP   T+++ TFGCSHN SD EYMAG L+  GY +TD    AD++L+N+CTVK+PS+   
Sbjct: 45  IPSNATVFIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNGADVYLLNSCTVKNPSEEHF 104

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
            +++ + ++  KPLVVAGCVPQ      + + VS++GV+ IDRV EV+ E L+GH VRL+
Sbjct: 105 ISMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGHCVRLI 164

Query: 175 ----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
                        +LP LDLPK+RRN+F+EI+PI+VGCL  CTYCKTK ARG L S+ +E
Sbjct: 165 GVNEHANNKQDPNELPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIE 224

Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
           S+V RVR+V+ +GVKE+ ++SED GAYG DI  ++  LL AIV E+      M+R+GM+N
Sbjct: 225 SIVSRVRSVLKEGVKEIRITSEDVGAYGIDINTDIVSLLRAIVKEIQ-GTEVMMRVGMSN 283

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           PP++L HL + A +LRHP VY F+H+P+QSGS+ +L+AM REYTL +F   V  +  +VP
Sbjct: 284 PPYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEFYECVHRIRSVVP 343

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
            + +ATDIIC FPGE + ++ +T+ L    +FP ++I++FYPR  TPAA MK++P+ V K
Sbjct: 344 NVTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPAASMKQIPTDVAK 403

Query: 405 KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           +R+ ELT  F ++     M G V  + + E A D  HLV
Sbjct: 404 RRTSELTEFFNSYRTLDQMVGEVHSVALLETAHDKHHLV 442


>gi|407416808|gb|EKF37819.1| tRNA modification enzyme, putative [Trypanosoma cruzi marinkellei]
          Length = 530

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/399 (48%), Positives = 278/399 (69%), Gaps = 11/399 (2%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IP   T+++ TFGCSHN SD EYMAG LS  GY +TD   +AD++L+N+CTVK+PS+   
Sbjct: 45  IPSNATVFVHTFGCSHNVSDGEYMAGLLSQAGYRVTDVFNDADVYLLNSCTVKNPSEEHF 104

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
            +++ + ++  KPLVVAGCVPQ      + + VS++GV+ IDRV EV+ E L+G+ VRL+
Sbjct: 105 ISMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGNCVRLI 164

Query: 175 ----HRKK------LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
               H  K      LP LDLPK+RRN+F+EI+PI+VGCL  CTYCKTK ARG L S+ +E
Sbjct: 165 GMNEHANKKQDPNELPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIE 224

Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
           S+V RVR+V+ +GVKE+ ++SED GAYG DI  ++  LL AIV E+      M+R+GM+N
Sbjct: 225 SIVSRVRSVLKEGVKEIRITSEDVGAYGIDINTDIVCLLRAIVKEVQ-GTEVMVRVGMSN 283

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           PP++L HL + A +LRHP VY F+H+P+QSGS+ +L+AM REY L +F   V  +  +VP
Sbjct: 284 PPYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQREYNLEEFYECVHRIRSVVP 343

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
            + +ATDIIC FPGE + ++ +T+ + +  +FP ++I++FYPR  TPAA MK++P+ V K
Sbjct: 344 NVTLATDIICAFPGEGEAEWRETMEVCEHVRFPVLNITRFYPRRNTPAASMKQIPTDVAK 403

Query: 405 KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           +R+ ELT  F ++  +  M G V  + + E A D  HLV
Sbjct: 404 QRTSELTEFFNSYRTFDHMVGEVHSVTLLETAHDKHHLV 442


>gi|170579583|ref|XP_001894893.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
           [Brugia malayi]
 gi|158598345|gb|EDP36257.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
           [Brugia malayi]
          Length = 447

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/368 (52%), Positives = 274/368 (74%), Gaps = 4/368 (1%)

Query: 78  MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137
           MAG LSA G+ LT+  E+A +W++N+CTVK+PS++ ++ ++ + +   K ++VAGCV Q 
Sbjct: 1   MAGLLSAAGHQLTNKKEDASLWILNSCTVKTPSETQLENMVREARKLNKFIIVAGCVSQA 60

Query: 138 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPKVRRNKFVEIL 196
             +L+ L+G+SIVGV+QI+ V + VEETLKG+ VR L R+K  + L LPK+R+NKFVEIL
Sbjct: 61  EPNLRFLDGISIVGVKQIECVTQAVEETLKGNCVRFLSRRKQNSNLLLPKIRKNKFVEIL 120

Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
            I+ GCL  CTYCKTK ARG+L SY ++SL+ R R   ADG KE+WL+SED GA+GRDI 
Sbjct: 121 AISSGCLNHCTYCKTKSARGNLVSYPLDSLLERARNAFADGCKELWLTSEDLGAWGRDID 180

Query: 257 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 316
           + LP LLNA+V E+ P+G  MLR+GMTNPP+IL+ L+EI+E+L HP VYSFLH+PVQS S
Sbjct: 181 MVLPDLLNALV-EIIPEG-CMLRLGMTNPPYILDFLEEISEILNHPRVYSFLHIPVQSAS 238

Query: 317 DAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376
           DAVLS M REYT +DF  VVD +I+ VP + IATD IC +P ET+ DF +++ L+++Y+F
Sbjct: 239 DAVLSDMKREYTCTDFCRVVDYMIQNVPNIYIATDFICAYPTETESDFEESMALVRKYRF 298

Query: 377 PQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME-GRVERIWITEI 435
           P + I+QFYPR GTPAA +KK+ +   ++R+ E++S+F +++ Y     G   R+ + E+
Sbjct: 299 PSLFINQFYPRIGTPAANLKKIDTIEARRRTAEMSSLFRSYSRYNKERIGEKHRVLVCEL 358

Query: 436 AADGIHLV 443
           A D  H V
Sbjct: 359 ATDQQHYV 366


>gi|323455423|gb|EGB11291.1| hypothetical protein AURANDRAFT_1140, partial [Aureococcus
           anophagefferens]
          Length = 446

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/400 (51%), Positives = 272/400 (68%), Gaps = 15/400 (3%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN---SEEADIWLINTCTVKSPSQ 111
           +P T+ +Y++TFGCSHN SDSEYM G L++ GY ++ +   ++ AD W++N+CTVK PSQ
Sbjct: 3   LPETKRVYVRTFGCSHNVSDSEYMCGLLASEGYEVSTDRADADAADAWVVNSCTVKDPSQ 62

Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQGSRDL---------KELEGVSIVGVQQIDRVVEVV 162
           +A    + +     K +VV+GC+PQG R L          EL+G S VG++QI RV E V
Sbjct: 63  AAFMKEVRRGMKDGKAVVVSGCIPQGERGLVKKQGGRKPPELDGASSVGIKQIGRVNEAV 122

Query: 163 EETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
              L+G     L    LP+L+LPKVR N  VEI+P++ GCLGAC YCKT+HARG LGSY 
Sbjct: 123 AAALRGETFHALGSGPLPSLELPKVRANALVEIVPLSSGCLGACAYCKTRHARGALGSYA 182

Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
           +  +V RV   +ADGV EVWLSSEDTGAYG D+G +L  LL A++  L      MLR+GM
Sbjct: 183 LADIVARVDGALADGVGEVWLSSEDTGAYGIDLGTSLGALLEALLPVLEAHPHGMLRVGM 242

Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA--MNREYTLSDFRTVVDTLI 340
           TNPP++L+ L+ +   L H  VY+FLHVPVQSGSDAVL+   MNREYT++DFR VVD L 
Sbjct: 243 TNPPYVLDQLEVLGRCLNHAQVYAFLHVPVQSGSDAVLAKDRMNREYTVADFRAVVDGLA 302

Query: 341 ELVP-GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 399
             V  G+ + TD+ICGFPGETD+DF+ T  L+++Y F  ++ISQFY RPGTPAA MK+V 
Sbjct: 303 ARVDGGLSLMTDVICGFPGETDDDFDATYALVEDYAFGLINISQFYARPGTPAASMKRVH 362

Query: 400 SAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADG 439
           +A VK RSR L+++ + F PY G+ G V         ADG
Sbjct: 363 TATVKDRSRRLSALTQTFRPYDGLVGTVVACAAHAEVADG 402


>gi|90083062|dbj|BAE90613.1| unnamed protein product [Macaca fascicularis]
          Length = 464

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/345 (56%), Positives = 255/345 (73%), Gaps = 9/345 (2%)

Query: 111 QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE 170
           Q      I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH 
Sbjct: 4   QDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHS 63

Query: 171 VRLLHRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
           VRLL +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY +
Sbjct: 64  VRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPI 123

Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
           + LV R +    +GV E+WL+SEDTGAYGRDIG NLP LL  +V E+ P+G+ MLR+GMT
Sbjct: 124 DELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMT 181

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           NPP+ILEHL+E+A++L HP VY+FLH+PVQ  SD+VL  M REY ++DF+ VVD L E V
Sbjct: 182 NPPYILEHLEEMAKILNHPRVYAFLHIPVQPASDSVLMEMKREYCVADFKRVVDFLKEKV 241

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
           PG+ IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V 
Sbjct: 242 PGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVK 301

Query: 404 KKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           K+R+++L+ VF +++PY    G  +++ +TE + D    V   +F
Sbjct: 302 KQRTKDLSRVFHSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRF 346


>gi|71029160|ref|XP_764223.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68351177|gb|EAN31940.1| hypothetical protein, conserved [Theileria parva]
          Length = 750

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/364 (50%), Positives = 261/364 (71%), Gaps = 4/364 (1%)

Query: 56  PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
           PG   +Y+K FGCSHN SDSEYM G +S  GYA+TD  +  D+ +IN+CTVK+PS+  M 
Sbjct: 323 PGEVVVYLKNFGCSHNISDSEYMLGIISESGYAITDTMDSCDLVIINSCTVKNPSEHGMI 382

Query: 116 TLIAKCKSAKKPLVVAGCVPQGSR--DLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
             I +     K ++V GC+PQ  +   +     +S++G+ QI+++V V+E  L G+ V +
Sbjct: 383 NYINQGLKLGKKIIVTGCIPQSDKLHPIFNNNNISLLGIMQIEKIVYVIENMLNGNRVVM 442

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
           L +KKLP+LDLPK+R+NK +EI+PI+ GCLG+CT+CKTKH+RG L SY +ES++ RV + 
Sbjct: 443 LEKKKLPSLDLPKIRKNKLIEIIPISTGCLGSCTFCKTKHSRGVLNSYEIESILDRVESC 502

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
           I++GVKE+WL+SED GAYG D+G N+  LL++I+A LP D   MLR+GM NPP+I +++ 
Sbjct: 503 ISEGVKEIWLTSEDLGAYGIDLGTNIITLLHSIIAVLPKD--IMLRLGMCNPPYIKKYIS 560

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           E+ E+LRH  V+ F+H+PVQS SD+VL  MNREY L DF  +V  + E VP   IATDII
Sbjct: 561 EVCEILRHENVFEFIHIPVQSCSDSVLEKMNREYKLEDFLHIVSVIKEKVPNCTIATDII 620

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFP ET ED   TV+ +++ K   ++ISQ+Y R GT ++ MK++ + V K RSRE+T+V
Sbjct: 621 CGFPTETHEDHQATVDTLRDLKLSVINISQYYSRKGTVSSGMKELDNNVKKNRSREVTNV 680

Query: 414 FEAF 417
           F ++
Sbjct: 681 FMSY 684


>gi|403223832|dbj|BAM41962.1| uncharacterized protein TOT_040000341 [Theileria orientalis strain
           Shintoku]
          Length = 873

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/398 (48%), Positives = 273/398 (68%), Gaps = 6/398 (1%)

Query: 40  LHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIW 99
           L DN + +    S   P    IY K FGCSHN SD EYM G L  +GY + D  E++ + 
Sbjct: 433 LSDNSMDQLYDAS--TPELTKIYFKNFGCSHNISDGEYMLGLLVEYGYKIVDTMEKSHLV 490

Query: 100 LINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDR 157
           +IN+CTVK PS+ AM T+I     +  P+VV+GCVPQ  ++        +S++G+ QIDR
Sbjct: 491 IINSCTVKGPSEEAMVTMIKSAVMSYLPVVVSGCVPQADQNNPVFNNPLISLLGITQIDR 550

Query: 158 VVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 217
           +VEVVE +L+G+++ LL +K LP LDLPK+RRNK +EI+P++ GCLG+CT+CKTKH+RG 
Sbjct: 551 IVEVVENSLQGNKMVLLEKKDLPRLDLPKIRRNKLIEIIPLSTGCLGSCTFCKTKHSRGV 610

Query: 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTM 277
           LGSY +E ++ RV + + +GVKE+WL+SED GAYG DIG NL  LL +IV  LP    TM
Sbjct: 611 LGSYDIEIILDRVESCVNEGVKEIWLTSEDLGAYGIDIGTNLVTLLRSIVQVLP--QGTM 668

Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
           LR+GM+NPPFI +++ EI E+L H  VY F+H+PVQS S++VL  MNREY + +F  +V 
Sbjct: 669 LRLGMSNPPFIKKYIDEICEILLHDNVYEFIHIPVQSFSNSVLKKMNREYKVEEFLHLVK 728

Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK 397
           T+   VP   IATD+I GFP E  E    T N+++E K P V+ISQ+Y R GT A +MK+
Sbjct: 729 TIRTKVPNCMIATDVISGFPTEKPEHHMATRNMLEELKLPVVNISQYYARKGTIACKMKQ 788

Query: 398 VPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEI 435
           +PS V K R+R++T+VF ++      +G+V +++  +I
Sbjct: 789 IPSKVRKGRTRDITNVFMSYETNSKYKGQVIKVYFNQI 826


>gi|326917127|ref|XP_003204853.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
           1-like, partial [Meleagris gallopavo]
          Length = 327

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/308 (61%), Positives = 239/308 (77%), Gaps = 9/308 (2%)

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           K   A K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK 
Sbjct: 1   KAHEANKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKD 60

Query: 180 PA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
                    LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG L SY +E LV R + 
Sbjct: 61  NGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRAKQ 120

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
              +GV E+WL+SEDTGAYGRDIG +LP LL  +V E  P+G+ MLR+GMTNPP+ILEHL
Sbjct: 121 SFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EAIPEGA-MLRLGMTNPPYILEHL 178

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
           +E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DFR VVD L E VPG+ IATDI
Sbjct: 179 EEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFRRVVDFLKEKVPGITIATDI 238

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
           ICGFPGETDEDF +T+ L+++YKFP + I+QFYPRPGTPAA+M +VP+AV K+R+++L+ 
Sbjct: 239 ICGFPGETDEDFQETMKLVEQYKFPSLFINQFYPRPGTPAAKMHQVPAAVKKQRTKDLSQ 298

Query: 413 VFEAFTPY 420
           +F ++ PY
Sbjct: 299 LFHSYNPY 306


>gi|358334470|dbj|GAA52927.1| CDKAL1-like protein [Clonorchis sinensis]
          Length = 659

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/514 (43%), Positives = 296/514 (57%), Gaps = 107/514 (20%)

Query: 29  VNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY- 87
           V  ++   +  L D       +++  IP    ++++T+GC+HN SDSEYMAG L+ +GY 
Sbjct: 22  VKVRFRTRRQNLADTDSDSVTTMA--IPEHYRVFVQTWGCAHNTSDSEYMAGLLAQYGYQ 79

Query: 88  ---------------ALTDNSE-----------------------------------EAD 97
                          A ++NSE                                   EAD
Sbjct: 80  VILGGSTKDSHEPVSAQSNNSECECSSGLAGDCCQKQEDKGCCTMPGLLTADERAKQEAD 139

Query: 98  IWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDR 157
           +W++N+CTVK P++      +       K LVVAGCVPQ       L+GVSI+GVQQIDR
Sbjct: 140 LWVLNSCTVKGPAEDHFRNAVKAGMRMGKRLVVAGCVPQSHPAADYLKGVSIIGVQQIDR 199

Query: 158 VVEVVEETLKGHEVRLL--------------HRKKL--PALDLPKVRRNKFVEILPINVG 201
           VVEVVEETL+G+ VR L               R++L    LDLPK+RRN  +EIL ++ G
Sbjct: 200 VVEVVEETLQGNTVRFLDKKWAVSGDGDSHSERRRLGGARLDLPKIRRNPLIEILAVSTG 259

Query: 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG----- 256
           CL ACTYCKTKHARG L SY +E L+ R +   ADGVKE+WL+SED GAYGRD+      
Sbjct: 260 CLNACTYCKTKHARGVLASYPIEELLERAKQAFADGVKELWLTSEDLGAYGRDLDRTTSV 319

Query: 257 -------------VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPC 303
                        + L  LL+ +V  L P+G  MLR+GMTNPP+ILE L+EIA+VL HP 
Sbjct: 320 YSCPSMAARFPQCLTLADLLSGLV-RLIPEGC-MLRLGMTNPPYILEQLREIADVLSHPR 377

Query: 304 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV--------------DTLIELVPG---M 346
           VY+FLHVPVQSGSDAVL  M REYT+ +F  VV              D   + V G   +
Sbjct: 378 VYAFLHVPVQSGSDAVLDCMKREYTVDEFSHVVTYLQDHIPPPPLPPDATDDAVNGSGTL 437

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 405
            +ATDIICGFP ET+ DF +TV L++ ++FP ++I+QF+ RPGTPAA M +K  +A VKK
Sbjct: 438 TVATDIICGFPNETEADFAETVKLVERFRFPVLYINQFFARPGTPAASMIRKATTAEVKK 497

Query: 406 RSRELTSVFEAFTPYLGMEGRVERIWITEIAADG 439
           R+R L  +F A+ PY G +G + R+ +TE + DG
Sbjct: 498 RTRRLHDLFRAYKPYEGRQGSLVRVLVTETSHDG 531


>gi|302809011|ref|XP_002986199.1| hypothetical protein SELMODRAFT_446559 [Selaginella moellendorffii]
 gi|300146058|gb|EFJ12730.1| hypothetical protein SELMODRAFT_446559 [Selaginella moellendorffii]
          Length = 686

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/358 (57%), Positives = 245/358 (68%), Gaps = 36/358 (10%)

Query: 88  ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGV 147
           A++D+ + AD+WLINTCTVK+P+   M TLI K K+A  PLV +     G +  +     
Sbjct: 2   AISDSPQRADLWLINTCTVKAPT---MGTLIRKGKAASIPLVDSWMRSSGFKRSR----- 53

Query: 148 SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 207
                Q+    V    ETLKGHE RLL R  LP+LDLPKVR+NKFVEI+PINVGCLGACT
Sbjct: 54  ---SCQRHRSAVNTAGETLKGHEARLLRRDALPSLDLPKVRKNKFVEIIPINVGCLGACT 110

Query: 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267
           YCKTKHARGHLGSYTV++ V R++TV+++G               RDIG N+P LL A+V
Sbjct: 111 YCKTKHARGHLGSYTVDTPVQRLKTVVSEG---------------RDIGANIPALLRALV 155

Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 327
           A LP            N P +  HL        HPCVYSFLHV VQSG D+VL  M REY
Sbjct: 156 AVLP-------HRQKYNAPNL--HLTASGGNGCHPCVYSFLHVLVQSGRDSVLEGMKREY 206

Query: 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
           T S+FR +VDTL  LVP + IATDIICGFPGET EDF++ + LI+E  FPQVHISQFYPR
Sbjct: 207 TFSEFRKIVDTLTRLVPEIHIATDIICGFPGETSEDFDRIMELIRECTFPQVHISQFYPR 266

Query: 388 PGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRL 445
           PGTPAA MK+VP+  VKKRSR LTS+FE+FTPY GME +  R+W+T  AADGIHLV L
Sbjct: 267 PGTPAALMKRVPTLEVKKRSRSLTSLFESFTPYAGME-KTYRVWVTNTAADGIHLVGL 323


>gi|84997025|ref|XP_953234.1| hypothetical protein [Theileria annulata strain Ankara]
 gi|65304230|emb|CAI76609.1| hypothetical protein, conserved [Theileria annulata]
          Length = 750

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/398 (45%), Positives = 263/398 (66%), Gaps = 17/398 (4%)

Query: 56  PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
           P    IY+K FGCSHN SDSEYM G +S  GY +T+N EE D+ +IN+CTVK+PS+ AM 
Sbjct: 312 PSEVKIYLKNFGCSHNISDSEYMLGLISESGYTITENIEECDVVIINSCTVKNPSEHAMV 371

Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRD-------------LKELEGVSIVGVQQIDRVVEVV 162
             I +     K ++V GC+PQ  +              L +L     VG+ QID+++ V+
Sbjct: 372 NYINQGLKLNKRIIVTGCIPQSDKKHPVLSTSVTNVQFLNKLNNS--VGIMQIDKIIYVI 429

Query: 163 EETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
           E  + G+ V LL +K LP+LDLPK+R+NK +EI+PI+ GCLG+CT+CKTKH+RG L SY 
Sbjct: 430 ENVMNGNRVVLLEKKSLPSLDLPKIRKNKLIEIIPISTGCLGSCTFCKTKHSRGVLNSYE 489

Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
           +E+++ RV + +++GVKE+WL+SED GAYG D+G N+  LL +I+  LP +   MLR+GM
Sbjct: 490 IEAILDRVESSVSEGVKEIWLTSEDLGAYGIDLGTNIITLLYSIINILPQN--IMLRLGM 547

Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
            NPP+I +++ EI E+L H  V+ F+H+PVQS SDAVL  MNREY L DF  +V  +   
Sbjct: 548 CNPPYIKKYINEICEILSHDNVFEFIHIPVQSCSDAVLEKMNREYLLEDFLYIVSVIKAK 607

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
           +P   IATDIICGFP ET++D   TV  +++ K   ++ISQ+Y R GT ++ MK++ + V
Sbjct: 608 LPNCTIATDIICGFPTETEQDHQITVQTLQQLKLSIINISQYYSRKGTISSSMKELDNNV 667

Query: 403 VKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGI 440
            K RSRE+T+VF ++         V +++   +  D +
Sbjct: 668 KKNRSREITNVFMSYENNSKFINSVFKVFFNHMNGDQL 705


>gi|345312696|ref|XP_001514441.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1,
           partial [Ornithorhynchus anatinus]
          Length = 448

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/336 (56%), Positives = 251/336 (74%), Gaps = 9/336 (2%)

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           K +   K +V+AGCVPQ       ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK 
Sbjct: 1   KAQEEDKKVVLAGCVPQAQPRQDYMKGLSIIGVQQIDRVVEVVEETVKGHSVRLLGQKKD 60

Query: 180 PA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
                    LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R + 
Sbjct: 61  NGKRMGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQ 120

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
              +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+ILEHL
Sbjct: 121 SFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHL 178

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
           + +A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ IATDI
Sbjct: 179 EAMAKILSHPRVYAFLHIPVQSASDSVLMGMKREYCVADFKRVVDFLKEKVPGITIATDI 238

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
           ICGFPGETDEDF  TV L+++Y+FP + I+QFYPRPGTPAA+M++VP+ V K+R++EL+ 
Sbjct: 239 ICGFPGETDEDFQDTVKLVEDYRFPSLFINQFYPRPGTPAAKMQQVPAQVKKQRTKELSQ 298

Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           +F ++ PY    G  +++ +TE + D    V   +F
Sbjct: 299 LFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRF 334


>gi|256081446|ref|XP_002576981.1| radical sam proteins [Schistosoma mansoni]
 gi|350644302|emb|CCD60954.1| radical sam proteins, putative [Schistosoma mansoni]
          Length = 810

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/505 (42%), Positives = 285/505 (56%), Gaps = 97/505 (19%)

Query: 25  NAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSA 84
           + V V  ++   KP     ++S+   LS  +P    ++++T+GC+HN SDSEYM G L  
Sbjct: 17  STVLVKTRFRNKKP-----NISEDLCLSSNLPEKFHVFVQTWGCAHNTSDSEYMTGLLVK 71

Query: 85  FGYALT--------------------------------------------------DNSE 94
           +GY +T                                                  D  +
Sbjct: 72  YGYRVTLDGSQITNGCESEANISSTSDFACGCQDNGDQCCSKEKNSDKGNVVLSNCDAKK 131

Query: 95  EADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQ 154
            AD+W++N+CTVK P++      + +     K +V +GCVPQ       L+GVS++GV Q
Sbjct: 132 NADVWVLNSCTVKGPAEDHFRNAVLEGIKLGKRVVASGCVPQSRPGADYLKGVSVIGVHQ 191

Query: 155 IDRVVEVVEETLKGHEVRLLHRKKLP----ALDLPKVRRNKFVEILPINVGCLGACTYCK 210
           IDR+VEVVEETL+       H         ALDLPK+RRN  +EIL I+ GCL ACTYCK
Sbjct: 192 IDRIVEVVEETLQESSSSATHSSSSSLAGIALDLPKIRRNPLIEILAISTGCLNACTYCK 251

Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-------------- 256
           TK ARG L SY +E L+ R +    +GVKE+WL+SED GAYGRD+               
Sbjct: 252 TKQARGILASYPIEQLLDRAKQAFKEGVKELWLTSEDLGAYGRDLDRTTSSLICPGLSEK 311

Query: 257 ----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPV 312
               + L  LL  +V  +P     MLR+GMTNPP+IL+ L EIAEVL HP VYSFLH+PV
Sbjct: 312 WSHHITLADLLAGLVPIIP--AGCMLRLGMTNPPYILDQLVEIAEVLSHPRVYSFLHIPV 369

Query: 313 QSGSDAVLSAMNREYTLSDFRTVVDTLIE------LVPG-----------MQIATDIICG 355
           QSGSDAVL AM REYT+ +F +VVD L++      L PG           + IATD+ICG
Sbjct: 370 QSGSDAVLDAMKREYTMEEFSSVVDYLMQNVKPPNLPPGAAHDTVNGSGTLTIATDVICG 429

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVF 414
           FP ET+ DFN+TV LI++Y+FP +HI+QF+PRPGTPAA M +K  S+ VK R+R L  +F
Sbjct: 430 FPTETNNDFNETVELIEKYQFPVLHINQFFPRPGTPAANMSRKANSSEVKSRTRRLHDLF 489

Query: 415 EAFTPYLGMEGRVERIWITEIAADG 439
            ++  Y G  G   R+ ITE + DG
Sbjct: 490 RSYRTYDGRVGCEVRVLITEPSFDG 514


>gi|340054214|emb|CCC48509.1| putative tRNA modification enzyme, fragment [Trypanosoma vivax
           Y486]
          Length = 514

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/420 (45%), Positives = 274/420 (65%), Gaps = 17/420 (4%)

Query: 40  LHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIW 99
           +HD  +      +  +  + +  + T      +   EYMAG L   GY++TD  E AD +
Sbjct: 10  MHDGDIEDILCNNATLNVSSSRIVNTLNTRQRRRLPEYMAGLLVQSGYSVTDEFEHADAY 69

Query: 100 LINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV 159
           L+N+CTVK+PS+    +++ + +   KPLVVAGCVPQ     K+   VSI+GV+ IDRV 
Sbjct: 70  LLNSCTVKNPSEEHFVSMMNRVRLTGKPLVVAGCVPQADPLNKQWSDVSIIGVRSIDRVC 129

Query: 160 EVVEETLKGHEVRLL----HRKK------------LPALDLPKVRRNKFVEILPINVGCL 203
            VV E L+G+ VRL+    H++             LPALDLPKVR N+++EI+PI+VGCL
Sbjct: 130 YVVHEALQGNCVRLIGLSGHQEASDSGGRSRETDTLPALDLPKVRHNRYIEIIPISVGCL 189

Query: 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILL 263
             CTYCKTK ARG L SY +E +V RVR V+ +GVKE+ L+SED+GAYG DIG ++  LL
Sbjct: 190 NNCTYCKTKQARGDLRSYPIEKIVERVREVLREGVKEIRLTSEDSGAYGIDIGTDVVQLL 249

Query: 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM 323
            A+ AEL      MLR+GM+NPP++L H+ ++A +L+HP +Y F+H+PVQSGS+ +L+AM
Sbjct: 250 RAVAAELSGK-DVMLRVGMSNPPYLLRHVNDLAVLLKHPNIYEFVHIPVQSGSNRILNAM 308

Query: 324 NREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383
            REYT+ +F   V+ +   VP + ++TDIIC FPGE + ++ +T++L +   F  ++I++
Sbjct: 309 LREYTVEEFCLCVEAIRSAVPRVTLSTDIICAFPGEGESEWRETMDLCRRINFEIINITR 368

Query: 384 FYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           FYPR  TPAA MK++P+ + K R+ ELT+ F ++  Y  M G V RI + E A D  HLV
Sbjct: 369 FYPRRNTPAAAMKQIPTNIAKSRTTELTNFFNSYRTYDSMVGEVHRITLLETAHDKHHLV 428


>gi|301779277|ref|XP_002925056.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
           1-like, partial [Ailuropoda melanoleuca]
          Length = 429

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 181/338 (53%), Positives = 241/338 (71%), Gaps = 18/338 (5%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+M+T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKNNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL----IELV 343
           I EHL+E+A++L HP VY+FLH+PVQS SD VL  M REY ++DF+ VVD L     E  
Sbjct: 297 ISEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKENQTEGN 356

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
           P  Q+      G PG     F +T ++++E +  Q+ +
Sbjct: 357 PNSQVR-----GVPGSLLTMFWKTQSVVEEPEQSQLKV 389


>gi|82915234|ref|XP_729019.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
 gi|23485813|gb|EAA20584.1| Drosophila melanogaster GH28477p-related [Plasmodium yoelii yoelii]
          Length = 817

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 178/382 (46%), Positives = 254/382 (66%), Gaps = 17/382 (4%)

Query: 67  GCSHN--QSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           GC+ N  +SD +  AG  +    +L  N +   +  IN   +K  + S  D         
Sbjct: 405 GCATNNDKSDPKTKAGCCNGENESLVSNVKNK-VEGINNEIIKKRTNSGKDI-------- 455

Query: 125 KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPALD 183
              ++V GCVPQ   D+K  E VS+VGV  ID++V+ VE  + G+ V+ L + KK+ +L+
Sbjct: 456 --KIIVCGCVPQAENDMKIFENVSLVGVNNIDKIVDAVENVINGYNVKYLKQSKKMTSLN 513

Query: 184 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVW 242
           LPK+R+NKF+EI+ IN GCLG CTYCKTK ARG+L SY ++ +V R++ V   D +KE+W
Sbjct: 514 LPKIRKNKFIEIININNGCLGNCTYCKTKFARGNLSSYNIKDIVNRIKHVYTKDNIKEIW 573

Query: 243 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 302
           L+SED+GAYG D+  N+  LL  I+ E   D   M+RIGMTNPP+IL+H+K+I ++L+H 
Sbjct: 574 LTSEDSGAYGIDLNTNIVNLLKEIL-EYVQDTDVMIRIGMTNPPYILKHVKDICKLLKHK 632

Query: 303 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 362
            +Y F+H+PVQSGS+ VL  MNREY + DF  +VD L + VP M IATDIICGFP E++ 
Sbjct: 633 NMYEFIHIPVQSGSNNVLKDMNREYKIEDFIYLVDNLRKYVPNMTIATDIICGFPYESEN 692

Query: 363 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF-TPYL 421
           D  +TVNLIK+YKFP ++ISQFYPR GT A  MKK+ + +VKKRSRE+T  F ++   Y 
Sbjct: 693 DHLETVNLIKKYKFPILNISQFYPRRGTVAYNMKKIDTKIVKKRSREVTDAFLSYQNNYK 752

Query: 422 GMEGRVERIWITEIAADGIHLV 443
            ++  ++ +  TEI++   H++
Sbjct: 753 FLQDTIQNVLFTEISSKSEHII 774



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 45/63 (71%)

Query: 56  PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
           P    IY K+FGC+HN SDSE+M G LS +G+    N E+ DI ++N+CTVK+PS+ +M 
Sbjct: 248 PENYNIYFKSFGCAHNSSDSEFMMGLLSNYGFKFVKNIEDCDICIVNSCTVKNPSEESMK 307

Query: 116 TLI 118
           T+I
Sbjct: 308 TII 310


>gi|74146734|dbj|BAE41351.1| unnamed protein product [Mus musculus]
          Length = 351

 Score =  364 bits (934), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 172/294 (58%), Positives = 225/294 (76%), Gaps = 9/294 (3%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
           ILEHL+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKE 350


>gi|68068881|ref|XP_676351.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56496008|emb|CAH98348.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 784

 Score =  364 bits (934), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 163/320 (50%), Positives = 232/320 (72%), Gaps = 4/320 (1%)

Query: 127 PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPALDLP 185
            ++V GCVPQ   D+K  E VS+VGV  ID++V+ VE  + G+ V+ L + KK+ +L+LP
Sbjct: 423 KIIVCGCVPQAENDMKIFENVSLVGVNNIDKIVDAVENVINGYNVKYLKQSKKMTSLNLP 482

Query: 186 KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLS 244
           K+R+NKF+EI+ IN GCLG CTYCKTK ARG+L SY ++ +V R++ V   D +KE+WL+
Sbjct: 483 KIRKNKFIEIININNGCLGNCTYCKTKFARGNLSSYNIKDIVSRIKYVCTKDNIKEIWLT 542

Query: 245 SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304
           SED+GAYG D+  N+  LL  I+ +   D   M+RIGMTNPP+IL+H+K+I ++L+H  +
Sbjct: 543 SEDSGAYGIDLNTNIVNLLKEIL-DYVQDTDVMIRIGMTNPPYILKHVKDICKLLKHKNM 601

Query: 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDF 364
           Y F+H+PVQSGS+ VL  MNREY + DF  +VD L + VP M IATDIICGFP E++ D 
Sbjct: 602 YEFIHIPVQSGSNNVLKDMNREYKIEDFIYLVDNLRKYVPNMTIATDIICGFPYESENDH 661

Query: 365 NQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF-TPYLGM 423
            +TVNLIK+YKFP ++ISQFYPR GT A  MKK+ + +VKKRSRE+T  F ++   Y  +
Sbjct: 662 LETVNLIKKYKFPILNISQFYPRRGTVAYNMKKIDTKIVKKRSREVTDAFLSYQNNYKFL 721

Query: 424 EGRVERIWITEIAADGIHLV 443
           +  ++++  TEI++   H++
Sbjct: 722 QNTIQKVLFTEISSKSEHII 741



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 46/64 (71%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IP    IY K+FGC+HN SDSE+M G LS +G+    N ++ DI ++N+CTVK+PS+ +M
Sbjct: 216 IPENYNIYFKSFGCAHNSSDSEFMMGLLSNYGFQFVKNIDDCDICIVNSCTVKNPSEESM 275

Query: 115 DTLI 118
            T+I
Sbjct: 276 KTII 279


>gi|237833257|ref|XP_002365926.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
 gi|211963590|gb|EEA98785.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
 gi|221508888|gb|EEE34457.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
           VEG]
          Length = 867

 Score =  363 bits (932), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 174/310 (56%), Positives = 228/310 (73%), Gaps = 5/310 (1%)

Query: 137 GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEIL 196
           G RDL +L   SIVGV  IDR+VE VEE LKG+ +RL  +++LP+LDLPK+RRN  VEI+
Sbjct: 510 GQRDLLKL--CSIVGVSAIDRIVEAVEEALKGNVIRLGGKRRLPSLDLPKIRRNNLVEIV 567

Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
           PI+ GCLG+CTYCKTKHARG LGSY  E++  RV   + +GVK++WL+SED+GAYG D  
Sbjct: 568 PISTGCLGSCTYCKTKHARGDLGSYPEEAIEKRVEASLEEGVKQIWLTSEDSGAYGLDRQ 627

Query: 257 VNLPILLNAI---VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
            +L  LL  +   V +   D S MLR+GM+NPPF+L+ LK   +V  HP V+ FLH+P+Q
Sbjct: 628 SSLTGLLARLLRNVFDRKADSSLMLRVGMSNPPFLLQQLKSAVQVFSHPNVFEFLHLPLQ 687

Query: 314 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373
           SGS+ VL AMNREYT   F  VV+TL++  P M IATDIICGFPGETDED  +T+ +I++
Sbjct: 688 SGSNDVLLAMNREYTAEQFEVVVETLLKHFPRMTIATDIICGFPGETDEDHERTLAIIRK 747

Query: 374 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWIT 433
           +KFP V+ISQFYPRPGTPAA MK++PS VVK+RSRE+T++FE++T Y  M    + +W +
Sbjct: 748 FKFPVVNISQFYPRPGTPAASMKQLPSQVVKRRSREVTALFESYTCYDWMLHTTQMVWFS 807

Query: 434 EIAADGIHLV 443
             +    H V
Sbjct: 808 STSEKSDHTV 817



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 48/64 (75%), Gaps = 1/64 (1%)

Query: 56  PGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           PG  + I++KTFGC+HNQSDSEYM G L A GY      E+AD+ LIN+CTVKSPS+ A+
Sbjct: 275 PGKRQRIFVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEDADVCLINSCTVKSPSEFAL 334

Query: 115 DTLI 118
            ++I
Sbjct: 335 YSVI 338


>gi|67462443|ref|XP_647883.1| RNA modification enzymes, MiaB-family [Entamoeba histolytica
           HM-1:IMSS]
 gi|56463504|gb|EAL42497.1| RNA modification enzymes, MiaB-family [Entamoeba histolytica
           HM-1:IMSS]
          Length = 438

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 185/387 (47%), Positives = 249/387 (64%), Gaps = 8/387 (2%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS----EEADIWLINTCTVKSPSQSAMD 115
           TI   T+GCSHN SDSE M   L   GY +  +S     +    +IN+CTVK+PSQ A+D
Sbjct: 9   TIKFLTYGCSHNVSDSEVMQKDLINAGYKIDSSSTPISSKYKAVVINSCTVKNPSQQAID 68

Query: 116 TLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
            +  KC+ A  PLV+AGCVPQ   +     +  SIVGV Q+ ++ E VE+         L
Sbjct: 69  VVQKKCEEANVPLVIAGCVPQADPKACHCSKKCSIVGVDQLHKITEAVEKATHNEGQSYL 128

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
            R  L  +D   VR N  ++I+    GC  AC+YCKTKHARG L SY +E LV RV+  +
Sbjct: 129 ERGALVDID-DHVRSNPLIDIIVTCTGCENACSYCKTKHARGGLRSYPIEELVKRVQQSV 187

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
            +GVKE+ L+ ED GAYG DI    P +L  I   +  DG  MLRIGM NPP+I+++  E
Sbjct: 188 DEGVKEIRLTGEDIGAYGLDINDTFPHMLERICEVV--DGKAMLRIGMVNPPYIIKYFNE 245

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           I  +L  PC + FLH+P+QSGS +VL AM R+YT  +F  V + L   VPG+ IATDIIC
Sbjct: 246 IVNILLRPCCFKFLHIPIQSGSTSVLDAMKRKYTREEFDDVCNRLRIAVPGISIATDIIC 305

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           GFP ETDED  +T+  I+++KFP V+ISQ Y RPGTPAA+MK++ S +VK+RSRE+T +F
Sbjct: 306 GFPTETDEDHKKTLECIEKHKFPVVNISQMYIRPGTPAAKMKQINSKIVKQRSREVTELF 365

Query: 415 EAFTPYLGMEGRVERIWITEIAADGIH 441
           +++ PY  + G+   +WI E+A DGI+
Sbjct: 366 DSYLPYTNLVGKECVVWINEMAHDGIN 392


>gi|221488386|gb|EEE26600.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
           GT1]
          Length = 867

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 174/310 (56%), Positives = 228/310 (73%), Gaps = 5/310 (1%)

Query: 137 GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEIL 196
           G RDL +L   SIVGV  IDR+VE VEE LKG+ +RL  +++LP+LDLPK+RRN  VEI+
Sbjct: 510 GQRDLLKL--CSIVGVSAIDRIVEAVEEALKGNVIRLGGKRRLPSLDLPKIRRNNLVEIV 567

Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
           PI+ GCLG+CTYCKTKHARG LGSY  E++  RV   + +GVK++WL+SED+GAYG D  
Sbjct: 568 PISTGCLGSCTYCKTKHARGDLGSYPEEAIEKRVEASLEEGVKQIWLTSEDSGAYGLDRQ 627

Query: 257 VNLPILLNAI---VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
            +L  LL  +   V +   D S MLR+GM+NPPF+L+ LK   +V  HP V+ FLH+P+Q
Sbjct: 628 SSLTGLLARLLRNVFDRKADSSLMLRVGMSNPPFLLQQLKSAVQVFSHPNVFEFLHLPLQ 687

Query: 314 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373
           SGS+ VL AMNREYT   F  VV+TL++  P M IATDIICGFPGETDED  +T+ +I++
Sbjct: 688 SGSNDVLLAMNREYTAEQFEVVVETLLKHFPRMTIATDIICGFPGETDEDHERTLAIIRK 747

Query: 374 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWIT 433
           +KFP V+ISQFYPRPGTPAA MK++PS VVK+RSRE+T++FE++T Y  M    + +W +
Sbjct: 748 FKFPVVNISQFYPRPGTPAASMKQLPSQVVKRRSREVTALFESYTCYDWMLHTTQMVWFS 807

Query: 434 EIAADGIHLV 443
             +    H V
Sbjct: 808 STSEKSDHTV 817



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 48/64 (75%), Gaps = 1/64 (1%)

Query: 56  PGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           PG  + I++KTFGC+HNQSDSEYM G L A GY      E+AD+ LIN+CTVKSPS+ A+
Sbjct: 275 PGKRQRIFVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEDADVCLINSCTVKSPSEFAL 334

Query: 115 DTLI 118
            ++I
Sbjct: 335 YSVI 338


>gi|449705503|gb|EMD45533.1| RNA modification enzymes MiaBfamily protein [Entamoeba histolytica
           KU27]
          Length = 438

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 184/387 (47%), Positives = 249/387 (64%), Gaps = 8/387 (2%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS----EEADIWLINTCTVKSPSQSAMD 115
           TI   T+GCSHN SDSE M   L   GY +  +S     +    +IN+CTVK+PSQ A+D
Sbjct: 9   TIKFLTYGCSHNVSDSEVMQKDLINAGYKIDSSSTPISSKYKAVVINSCTVKNPSQQAID 68

Query: 116 TLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
            +  KC+ A  PLV+AGCVPQ   +     +  SIVGV Q+ ++ E VE+         L
Sbjct: 69  VVQKKCEEANVPLVIAGCVPQADPKACHCSKKCSIVGVDQLHKITEAVEKATHNEGQSYL 128

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
            R  L  +D   VR N  ++I+    GC  AC+YCKTKHARG L SY +E LV RV+  +
Sbjct: 129 ERGALVDID-DHVRSNPLIDIIVTCTGCENACSYCKTKHARGGLRSYPIEELVKRVQQSV 187

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
            +GVKE+ L+ ED GAYG DI    P +L  I   +  DG  MLRIGM NPP+I+++  E
Sbjct: 188 DEGVKEIRLTGEDIGAYGLDINDTFPHMLERICEVV--DGKAMLRIGMVNPPYIIKYFNE 245

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           I  +L  PC + FLH+P+QSGS ++L AM R+YT  +F  V + L   VPG+ IATDIIC
Sbjct: 246 IVNILLRPCCFKFLHIPIQSGSTSILDAMKRKYTREEFDDVCNRLRIAVPGISIATDIIC 305

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           GFP ETDED  +T+  I+++KFP V+ISQ Y RPGTPAA+MK++ S +VK+RSRE+T +F
Sbjct: 306 GFPTETDEDHKKTLECIEKHKFPVVNISQMYIRPGTPAAKMKQINSKIVKQRSREVTELF 365

Query: 415 EAFTPYLGMEGRVERIWITEIAADGIH 441
           +++ PY  + G+   +WI E+A DGI+
Sbjct: 366 DSYLPYTNLVGKECVVWINEMAHDGIN 392


>gi|167379627|ref|XP_001735214.1| radical sam proteins [Entamoeba dispar SAW760]
 gi|165902883|gb|EDR28592.1| radical sam proteins, putative [Entamoeba dispar SAW760]
          Length = 438

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 185/388 (47%), Positives = 253/388 (65%), Gaps = 10/388 (2%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE-----EADIWLINTCTVKSPSQSAM 114
           TI   T+GCSHN SDSE M   L   GY + D+SE     +    +IN+CTVK+PSQ A+
Sbjct: 9   TIKFLTYGCSHNVSDSEVMQKDLINAGYKI-DSSETPISSKYKAVVINSCTVKNPSQQAI 67

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
           + +  KC+ A  PLV+AGCVPQ   +  +  +  SIVGV Q+ ++ E VE+         
Sbjct: 68  EVVQKKCEEANVPLVIAGCVPQADPKACQCSKKCSIVGVDQLHKITEAVEKATHNEGQSY 127

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
           L R  L  +D   VR N  ++++    GC  AC+YCKTKHARG L SY +E LV RV+  
Sbjct: 128 LERGALVNID-EHVRSNPLIDVIVTCTGCENACSYCKTKHARGGLRSYPIEDLVKRVQHS 186

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
           I +GVKE+ L+ ED GAYG DI    P +L  I   +  +G  MLRIGM NPP+I+++ K
Sbjct: 187 IDEGVKEIRLTGEDIGAYGLDINETFPHMLECICEVV--EGKAMLRIGMVNPPYIIKYFK 244

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           EI  +L  PC + FLH+P+QSGS +VL AM R+YT  +F  V + L   VPG+ IATDII
Sbjct: 245 EIVNILLRPCCFKFLHIPIQSGSSSVLEAMKRKYTREEFDDVCNRLRISVPGISIATDII 304

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           CGFP ETDED  +T+  I++++FP V+ISQ Y RPGTPAA+MK++ S +VK+RSRE+T +
Sbjct: 305 CGFPTETDEDHKKTLECIQKHQFPIVNISQMYIRPGTPAAKMKQINSKIVKQRSREVTEI 364

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIH 441
           F+++ PY  + G+   +WI E+A DGI+
Sbjct: 365 FDSYLPYTNLIGKEYIVWINEMAHDGIN 392


>gi|407043368|gb|EKE41912.1| MiaB family tRNA modifying enzyme, archaeal-type protein [Entamoeba
           nuttalli P19]
          Length = 438

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 184/387 (47%), Positives = 249/387 (64%), Gaps = 8/387 (2%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS----EEADIWLINTCTVKSPSQSAMD 115
           TI   T+GCSHN SDSE M   L   GY +  +S     +    +IN+CTVK+PSQ A+D
Sbjct: 9   TIKFLTYGCSHNVSDSEVMQKDLINAGYKIDSSSTPISSKYKAVVINSCTVKNPSQQAID 68

Query: 116 TLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
            +  KC+ A  PLV+AGCVPQ   +     +  SIVGV Q+ ++ E VE+         L
Sbjct: 69  VVQKKCEEANVPLVIAGCVPQADPKACHCSKKCSIVGVDQLHKITEAVEKATHNEGQSYL 128

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
            R  L  +D   VR N  ++++    GC  AC+YCKTKHARG L SY +E LV RV+  +
Sbjct: 129 ERGALVDID-DHVRSNPLIDVIVTCTGCENACSYCKTKHARGGLRSYPIEELVKRVQQSV 187

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
            +GVKE+ L+ ED GAYG DI    P +L  I   +  DG  MLRIGM NPP+I+++  E
Sbjct: 188 DEGVKEIRLTGEDIGAYGLDINDTFPHMLERICEVV--DGKAMLRIGMVNPPYIIKYFDE 245

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           I  +L  PC + FLH+P+QSGS +VL AM R+YT  +F  V + L   VPG+ IATDIIC
Sbjct: 246 IVNILLRPCCFKFLHIPIQSGSTSVLDAMKRKYTREEFDDVCNRLRISVPGISIATDIIC 305

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           GFP ETDED  +T+  I+++KFP V+ISQ Y RPGTPAA+MK++ S +VK+RSRE+T +F
Sbjct: 306 GFPTETDEDHKKTLECIEKHKFPVVNISQMYIRPGTPAAKMKQINSKIVKQRSREVTELF 365

Query: 415 EAFTPYLGMEGRVERIWITEIAADGIH 441
           +++ PY  + G+   +WI E+A DGI+
Sbjct: 366 DSYLPYTNLVGKECVVWINEMAHDGIN 392


>gi|401408469|ref|XP_003883683.1| putative radical SAM domain-containing protein [Neospora caninum
           Liverpool]
 gi|325118100|emb|CBZ53651.1| putative radical SAM domain-containing protein [Neospora caninum
           Liverpool]
          Length = 863

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 174/308 (56%), Positives = 227/308 (73%), Gaps = 5/308 (1%)

Query: 139 RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPI 198
           RDL +L   SIVGV  IDR+VE VEE LKG+ +RL  +K+LP+LDLPK+RRN  VEI+PI
Sbjct: 508 RDLLKL--CSIVGVSAIDRIVEAVEEALKGNVIRLGGKKRLPSLDLPKIRRNALVEIVPI 565

Query: 199 NVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN 258
           + GCLG+CTYCKTKHARG LGSY  E++  R+   + DGVK++WL+SED+GAYG D   +
Sbjct: 566 STGCLGSCTYCKTKHARGELGSYPEEAIETRIEASLLDGVKQIWLTSEDSGAYGLDRQSS 625

Query: 259 LPILLNAI---VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 315
           L  LL  +   V +   D S MLR+GM+NPPF+L+ LK   +V  HP V+ FLH+P+QSG
Sbjct: 626 LTSLLARLLRNVFDRRADPSLMLRVGMSNPPFLLQQLKSAVQVFAHPNVFEFLHLPLQSG 685

Query: 316 SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375
           S+ VL AMNREYT   F  VV+TL++  P M IATDIICGFPGET+ED  +T+ +IK++K
Sbjct: 686 SNDVLLAMNREYTAEQFEVVVETLLKHFPRMTIATDIICGFPGETEEDHEKTLAIIKKFK 745

Query: 376 FPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEI 435
           FP V+ISQFYPRPGTPAA MK++PS +VK+RSRE+T++FE++T Y  M    + +W T  
Sbjct: 746 FPVVNISQFYPRPGTPAASMKQLPSQIVKRRSREVTALFESYTCYDWMLHTTQMVWFTGT 805

Query: 436 AADGIHLV 443
           +    H V
Sbjct: 806 SEKSHHTV 813



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 48/64 (75%), Gaps = 1/64 (1%)

Query: 56  PGTET-IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           PG +  IY+KTFGC+HNQSDSEYM G L A GY      EEAD+ LIN+CTVKSPS+ A+
Sbjct: 268 PGKQQKIYVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEEADVCLINSCTVKSPSEFAL 327

Query: 115 DTLI 118
            ++I
Sbjct: 328 YSVI 331


>gi|221057894|ref|XP_002261455.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
 gi|194247460|emb|CAQ40860.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
          Length = 750

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 165/347 (47%), Positives = 240/347 (69%), Gaps = 4/347 (1%)

Query: 100 LINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV 159
           L+   +VK   +  +   IAK       ++V GCVPQ  +D++  E VS+VGV  ID++V
Sbjct: 362 LVKRASVKQMEKEGVKGAIAKAPRGDIKIIVCGCVPQAEKDMEIFENVSLVGVTNIDKIV 421

Query: 160 EVVEETLKGHEVRLL-HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
           +VVE  + G+ VR L H KK+ +L+LPK+R+NK++EI+ IN GCLG CTYCKTK ARG L
Sbjct: 422 DVVENVINGYNVRYLKHSKKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKFARGDL 481

Query: 219 GSYTVESLVGRVRTVI-ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTM 277
            SY +  ++ R++ V   + +KE+WL+SEDTGAYG D+  N+  LL  I+  +  +   M
Sbjct: 482 ASYNIPDIINRIKHVCNEENIKEIWLTSEDTGAYGIDLNTNIVKLLKEILDTIS-NSDVM 540

Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
           +R+GMTNPP+IL+H+K+I  +L+H  +Y F+H+PVQSGS+ VL  MNREY + DF  +V+
Sbjct: 541 IRLGMTNPPYILKHIKDICNLLKHKNMYEFIHIPVQSGSNRVLKNMNREYEIEDFIYLVE 600

Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK 397
            L + VP + IATDIICGFP E ++D  +TV+L+K+Y+FP ++ISQFYPR GT A  MKK
Sbjct: 601 NLRKDVPNITIATDIICGFPYEMEKDHLETVDLVKKYQFPILNISQFYPRRGTVAYGMKK 660

Query: 398 VPSAVVKKRSRELTSVFEAFT-PYLGMEGRVERIWITEIAADGIHLV 443
           + + +VKKRSRE+T  F ++T  Y  +EG  +R+  TE++     L+
Sbjct: 661 INTKIVKKRSREVTDAFLSYTNNYKFLEGTTQRVLFTEVSTKSDDLI 707



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 45/64 (70%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           +P    IY K+FGC+HN SDSE+M G L  +G+    + EE DI +IN+CTVK+PS+ +M
Sbjct: 208 LPEKYKIYFKSFGCAHNSSDSEFMMGLLGNYGFQFVKSVEECDICIINSCTVKNPSEESM 267

Query: 115 DTLI 118
            T+I
Sbjct: 268 KTII 271


>gi|313217015|emb|CBY38208.1| unnamed protein product [Oikopleura dioica]
          Length = 1477

 Score =  346 bits (888), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 165/290 (56%), Positives = 214/290 (73%), Gaps = 9/290 (3%)

Query: 161 VVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKH 213
           VVEETLKG+ V+LL  KK          L LPKVRRN  +EI+ IN GCL +CTYCKTKH
Sbjct: 15  VVEETLKGNTVKLLGPKKRAGKRIGGADLGLPKVRRNALIEIISINTGCLNSCTYCKTKH 74

Query: 214 ARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273
           ARG L SY ++ +V R       G+ EVWL+SEDTGAYGRDIG N+  LLNA+V  +P  
Sbjct: 75  ARGDLASYPIDEIVARFEQAFEQGIVEVWLTSEDTGAYGRDIGTNIVELLNAVVKTIPE- 133

Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 333
              M+RIGMTNPP+ILEHL+ IA++L HP VYSFLHVPVQSGSDAVL++M REY   DF 
Sbjct: 134 -GCMMRIGMTNPPYILEHLEGIAKILNHPRVYSFLHVPVQSGSDAVLNSMRREYNREDFC 192

Query: 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393
            VVDTL   VP   IATDII GFP ET+EDF++T++L ++YKFP + ++QF+PRPGTPAA
Sbjct: 193 KVVDTLRANVPDCNIATDIIAGFPTETEEDFDETISLCEKYKFPSLFMNQFFPRPGTPAA 252

Query: 394 RMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           + +++P  V+K+R+++L++VF+++ P+ G EG    + ITE+A D + LV
Sbjct: 253 KWEQIPRQVIKERTKKLSNVFKSYLPFEGREGERHSVLITEMAHDKVSLV 302


>gi|300122464|emb|CBK23034.2| unnamed protein product [Blastocystis hominis]
          Length = 465

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 170/380 (44%), Positives = 250/380 (65%), Gaps = 3/380 (0%)

Query: 56  PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
           P  +T+Y+ TFGCSHN SD E M G L+  GY +T   EEAD+W+INTCTV+  S  +  
Sbjct: 33  PDAKTVYVHTFGCSHNISDGETMKGVLAQGGYNITSKKEEADVWVINTCTVRDKSIQSFR 92

Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRDLK-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
           TL  + K   K LVVAGC+ +    L  E    + +GV+QI ++ E V+          +
Sbjct: 93  TLYNEAKKTGKKLVVAGCMLEADPSLSSEFHADATLGVRQIAQIKETVDSLFFPPTHHFV 152

Query: 175 H-RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
               ++P+L LPK+R+++ VEI+PI++GCLGACT+C+T+ ARG L SY ++ ++ RV   
Sbjct: 153 SPSDEIPSLQLPKIRKDEGVEIIPISLGCLGACTFCQTRLARGKLWSYPIDEIIKRVHAA 212

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
             +G+ E+WL+SEDTGAYG D   +L  LL+ I +E+  D + M++IGMTNPPF+   L+
Sbjct: 213 KVNGISEIWLTSEDTGAYGMDRNSSLMELLDRIRSEVE-DSNVMVKIGMTNPPFLKPMLE 271

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
            ++ +L H   YS+LH+PVQSGSDAVL  MNR+Y +SDFR +   L + VPG+ ++TDII
Sbjct: 272 PLSTILNHKNFYSYLHIPVQSGSDAVLKRMNRKYQVSDFREICSFLSQHVPGITLSTDII 331

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
            GFP E+ ED  +T+ L+++     VH S++YPRP T AAR +++P  VVK R +EL+  
Sbjct: 332 VGFPYESAEDHAKTMQLLRDLNLNIVHYSRYYPRPHTLAARYEQLPIDVVKSRVKELSDW 391

Query: 414 FEAFTPYLGMEGRVERIWIT 433
           F+A  PY  + G+   +W++
Sbjct: 392 FKALHPYDELVGKEMDVWVS 411


>gi|71996771|ref|NP_740783.2| Protein Y92H12BL.1 [Caenorhabditis elegans]
 gi|75017352|sp|Q8MXQ7.2|CDKAL_CAEEL RecName: Full=Threonylcarbamoyladenosine tRNA
           methylthiotransferase; AltName: Full=CDKAL1-like
           protein; AltName: Full=tRNA-t(6)A37
           methylthiotransferase
 gi|373220306|emb|CCD72949.1| Protein Y92H12BL.1 [Caenorhabditis elegans]
          Length = 425

 Score =  343 bits (880), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 170/315 (53%), Positives = 231/315 (73%), Gaps = 5/315 (1%)

Query: 130 VAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPKVR 188
           +AGCV Q +     L+ VSIVGV+QIDR+VEVV ETLKG++VRLL R +  A L LPK+R
Sbjct: 1   MAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVGETLKGNKVRLLTRNRPDAVLSLPKMR 60

Query: 189 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSED 247
           +N+ +E+L I+ GCL  CTYCKTK ARG L SY +  LV + R    D GVKE+WL+SED
Sbjct: 61  KNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLADLVEQARAAFHDEGVKELWLTSED 120

Query: 248 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 307
            GA+GRDIG+ LP LL  +V ++ PDGS M+R+GMTNPP+IL+HL+EIAE+L HP VY+F
Sbjct: 121 LGAWGRDIGLVLPDLLRELV-KVIPDGS-MMRLGMTNPPYILDHLEEIAEILNHPKVYAF 178

Query: 308 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 367
           LH+PVQS SDAVL+ M REY+   F  + D +I  VP + IATD+I  FP ET EDF ++
Sbjct: 179 LHIPVQSASDAVLNDMKREYSRRHFEQIADYMIANVPNIYIATDMILAFPTETLEDFEES 238

Query: 368 VNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME-GR 426
           + L+++YKFP + I+Q+YPR GTPAAR+KK+ +   +KR+  ++ +F ++T Y     G 
Sbjct: 239 MELVRKYKFPSLFINQYYPRSGTPAARLKKIDTVEARKRTAAMSELFRSYTRYTDERIGE 298

Query: 427 VERIWITEIAADGIH 441
           + R+ +TE+AAD +H
Sbjct: 299 LHRVLVTEVAADKLH 313


>gi|341883251|gb|EGT39186.1| hypothetical protein CAEBREN_03885 [Caenorhabditis brenneri]
          Length = 432

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 170/315 (53%), Positives = 231/315 (73%), Gaps = 5/315 (1%)

Query: 130 VAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVR 188
           +AGCV Q +     L+ VSIVGV+QIDR+VEVV ETLKG++VRLL R +  AL  LPK+R
Sbjct: 1   MAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVGETLKGNKVRLLTRNRPDALLSLPKMR 60

Query: 189 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI-ADGVKEVWLSSED 247
           +N+ +E+L I+ GCL  CTYCKTK ARG L SY +  LV + R     +GVKE+WL+SED
Sbjct: 61  KNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLADLVEQARAAFHEEGVKELWLTSED 120

Query: 248 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 307
            GA+GRDIG+ LP LL  +V  +P DGS M+R+GMTNPP+IL+HL+EIAE+L HP VY+F
Sbjct: 121 LGAWGRDIGLVLPDLLKELVKVIP-DGS-MMRLGMTNPPYILDHLEEIAEILNHPKVYAF 178

Query: 308 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 367
           LH+PVQS SDAVL+ M REY+   F  + D +IE VP + IATD+I  FP ET EDF ++
Sbjct: 179 LHIPVQSASDAVLTDMKREYSRRHFEQIADYMIEHVPNIYIATDMILAFPTETLEDFEES 238

Query: 368 VNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME-GR 426
           ++L+++YKFP + I+Q+YPR GTPAAR+KK+ +   +KR+  ++ +F ++T +     G 
Sbjct: 239 MDLVRKYKFPSLFINQYYPRSGTPAARLKKIDTVEARKRTAAMSELFRSYTRFTEDRIGE 298

Query: 427 VERIWITEIAADGIH 441
           V  + +TEIAAD +H
Sbjct: 299 VHNVLVTEIAADKLH 313


>gi|389584604|dbj|GAB67336.1| tRNA modifying enzyme, partial [Plasmodium cynomolgi strain B]
          Length = 768

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 164/352 (46%), Positives = 240/352 (68%), Gaps = 4/352 (1%)

Query: 95  EADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQ 154
           + D  L+    VK   + A+    A        ++V GCVPQ  +D++  E VS+VGV  
Sbjct: 375 KGDSGLVKREAVKKTEKEAVKGAAATAPRGDIKIIVCGCVPQAEKDMEIFENVSLVGVSN 434

Query: 155 IDRVVEVVEETLKGHEVRLLHR-KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKH 213
           ID++V+VVE  + G+ VR L + KK+ +L+LPK+R+NK++EI+ IN GCLG CTYCKTK 
Sbjct: 435 IDKIVDVVENVINGYNVRYLKQGKKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKF 494

Query: 214 ARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272
           ARG L SY +  ++ R++ V ++  +KE+WL+SEDTGAYG D+  N+  LL  I+  +  
Sbjct: 495 ARGDLASYNIPDIINRIKHVCSEENIKEIWLTSEDTGAYGIDLNTNIVKLLKEILDTIS- 553

Query: 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 332
           +   M+R+GMTNPP+IL+H+K+I  +L+H  +Y F+H+PVQSGS+ VL  MNREY + DF
Sbjct: 554 NSDVMIRLGMTNPPYILKHVKDICNLLKHKNMYEFIHIPVQSGSNRVLKNMNREYQIEDF 613

Query: 333 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392
             +V+ L + VP + IATDIICGFP E + D  +TV+L+K+Y+FP ++ISQFYPR GT A
Sbjct: 614 IYLVENLRKDVPNITIATDIICGFPYEMENDHVETVDLVKKYQFPILNISQFYPRRGTVA 673

Query: 393 ARMKKVPSAVVKKRSRELTSVFEAFT-PYLGMEGRVERIWITEIAADGIHLV 443
             MKK+ + +VKKRSRE+T  F ++T  Y  +EG  +R+  TE++     L+
Sbjct: 674 YGMKKINTKIVKKRSREVTDAFLSYTNNYKFLEGTTQRVLFTEVSTKSDDLI 725



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 45/64 (70%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           +P    IY K+FGC+HN SDSE+M G L  +G+    + EE DI +IN+CTVK+PS+ +M
Sbjct: 229 LPEKYKIYFKSFGCAHNSSDSEFMMGLLGNYGFQFVKSVEECDICIINSCTVKNPSEESM 288

Query: 115 DTLI 118
            T+I
Sbjct: 289 KTII 292


>gi|32480090|emb|CAE01708.1| OSJNBb0086G13.6 [Oryza sativa Japonica Group]
          Length = 558

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 177/257 (68%), Positives = 202/257 (78%), Gaps = 28/257 (10%)

Query: 1   MEDIEDLLAGSGGGGAPPG--FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
           MEDIED+L  +G  G       RLP+ AV V PK    +PR      S+     P    +
Sbjct: 3   MEDIEDVLGPAGIAGGGAAPGLRLPLAAVAVKPK----RPRS-----SRVAQTRPQPEAR 53

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT             QSDSEYM+GQLSAFGYA+T+  E AD+WLINTCTVK+PSQSAM
Sbjct: 54  IPGT-------------QSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAM 100

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
            TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 101 TTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLL 160

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
            RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V+
Sbjct: 161 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVV 220

Query: 235 ADGVKEVWLSSEDTGAY 251
           ++GV+E+WLSSEDTGAY
Sbjct: 221 SEGVREIWLSSEDTGAY 237



 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/122 (86%), Positives = 115/122 (94%)

Query: 322 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
           AMNREYT+S+FR VVDTL ELVPGMQIATDIICGFPGETDEDF+QTVNL+K+Y FPQVHI
Sbjct: 253 AMNREYTVSEFRRVVDTLCELVPGMQIATDIICGFPGETDEDFSQTVNLVKQYLFPQVHI 312

Query: 382 SQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIH 441
           SQFYPRPGTPAARMKKVPS  VKKRSRELTSVFE+F+PY GMEG+VERIWITEIA DG+H
Sbjct: 313 SQFYPRPGTPAARMKKVPSVEVKKRSRELTSVFESFSPYQGMEGKVERIWITEIATDGVH 372

Query: 442 LV 443
           LV
Sbjct: 373 LV 374


>gi|86171407|ref|XP_966205.1| radical SAM protein, putative [Plasmodium falciparum 3D7]
 gi|46361171|emb|CAG25035.1| radical SAM protein, putative [Plasmodium falciparum 3D7]
          Length = 860

 Score =  340 bits (872), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 153/319 (47%), Positives = 228/319 (71%), Gaps = 4/319 (1%)

Query: 128 LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH-RKKLPALDLPK 186
           ++V GCVPQ  +D++  E VS+VGV  ID++V+VVE  + G+ V+ L   KK+ +L+LPK
Sbjct: 499 IIVCGCVPQAEKDMEIFENVSLVGVNNIDKIVDVVENVINGYNVQYLKTSKKMTSLNLPK 558

Query: 187 VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI-ADGVKEVWLSS 245
           +R+NK++EI+ IN GCLG CTYCKTK ARG L SY +  +  R+  V   + +KE+WL+S
Sbjct: 559 IRKNKYIEIININNGCLGNCTYCKTKFARGDLSSYNIRDITDRITYVCNEENIKEIWLTS 618

Query: 246 EDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 305
           EDTGAYG DI  ++  LL  I+  +    + M+R+GMTNPP+IL+H+K+I  +L+H  +Y
Sbjct: 619 EDTGAYGIDINTDIVNLLKNILKSVEH-TNVMIRLGMTNPPYILKHIKDICTLLKHKNMY 677

Query: 306 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 365
            F+H+PVQSGS+ VL  MNREYT+ DF  +V+ L + VP + I+TDIICGFP E+++D  
Sbjct: 678 EFIHIPVQSGSNNVLKNMNREYTIEDFIFLVENLRKYVPNITISTDIICGFPYESEQDHQ 737

Query: 366 QTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT-PYLGME 424
            TV+LIK ++FP ++ISQFYPR GT A  MKK+ + +VKKRSR++T  F ++   Y  ++
Sbjct: 738 NTVHLIKNFQFPILNISQFYPRRGTVAYNMKKINTKIVKKRSRDVTEAFLSYEHNYKFLQ 797

Query: 425 GRVERIWITEIAADGIHLV 443
             ++++  TEI++   H++
Sbjct: 798 NTIQQVLFTEISSKSEHII 816



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 45/64 (70%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           +P    IY K+FGC+HN SDSE+M G L+ +G+      EE DI ++N+CTVK+PS+ +M
Sbjct: 239 LPENYKIYFKSFGCAHNSSDSEFMMGLLANYGFKFVKKIEECDICIVNSCTVKNPSEESM 298

Query: 115 DTLI 118
            T+I
Sbjct: 299 KTII 302


>gi|156101079|ref|XP_001616233.1| tRNA modifying enzyme [Plasmodium vivax Sal-1]
 gi|148805107|gb|EDL46506.1| tRNA modifying enzyme, putative [Plasmodium vivax]
          Length = 799

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 162/329 (49%), Positives = 235/329 (71%), Gaps = 9/329 (2%)

Query: 123 SAKKP-----LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR- 176
           SAK P     ++V GCVPQ  +D++  E VS+VGV  ID++V+VVE  + G+ VR L + 
Sbjct: 429 SAKPPRGDIKIIVCGCVPQAEKDMEIFENVSLVGVTNIDKIVDVVENVINGYNVRYLKQA 488

Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
           KK+ +L+LPK+R+NK++EI+ IN GCLG CTYCKTK ARG L SY +  ++ R++ V ++
Sbjct: 489 KKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKFARGDLASYNIPDIINRIKHVCSE 548

Query: 237 -GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
             +KE+WL+SEDTGAYG D+  N+  LL  I+  +  +   M+R+GMTNPP+IL+H+K+I
Sbjct: 549 ENIKEIWLTSEDTGAYGIDLNTNIVKLLKEILDTIS-NSDVMIRLGMTNPPYILKHVKDI 607

Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
             +L+H  +Y F+H+PVQSGS+ VL  MNREY + DF  +V+ L + VP + IATDIICG
Sbjct: 608 CNLLKHKNMYEFIHIPVQSGSNRVLKNMNREYEIEDFIYLVENLRKDVPNITIATDIICG 667

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
           FP E ++D  +TV+L+K+Y+FP ++ISQFYPR GT A  MKK+ + +VKKRSRE+T  F 
Sbjct: 668 FPYEMEKDHVETVDLVKKYQFPILNISQFYPRRGTVAYGMKKINTKIVKKRSREVTDAFL 727

Query: 416 AFT-PYLGMEGRVERIWITEIAADGIHLV 443
           ++T  Y  +EG  +R+  TE++     L+
Sbjct: 728 SYTNNYKFLEGTTQRVLFTEVSTKSEDLI 756



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 45/64 (70%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           +P    IY K+FGC+HN SDSE+M G L  +G+    + EE DI +IN+CTVK+PS+ +M
Sbjct: 252 LPEKYKIYFKSFGCAHNSSDSEFMMGLLGNYGFQFVKSVEECDICIINSCTVKNPSEESM 311

Query: 115 DTLI 118
            T+I
Sbjct: 312 KTII 315


>gi|405971863|gb|EKC36670.1| hypothetical protein CGI_10015051, partial [Crassostrea gigas]
          Length = 354

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 155/288 (53%), Positives = 211/288 (73%), Gaps = 9/288 (3%)

Query: 168 GHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
           GH VRL  +KKL        AL LPK+R+N  +EI+ IN GCL  CTYCKTKHARG LGS
Sbjct: 1   GHSVRLYGQKKLEGKKVGGAALSLPKIRKNPLIEIIAINTGCLNQCTYCKTKHARGELGS 60

Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
           Y  + +V R +    +GV E+WL+SED GAYG DIGV LP LL  +V E+ P+G+ M R+
Sbjct: 61  YPPDEIVARAKQSFEEGVIEIWLTSEDLGAYGHDIGVTLPQLLWKLV-EVIPEGARM-RL 118

Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
           GMTNPP+ILEHL+E+A++LRHP VYSFLHVPVQS SD+VL  M REY  +DFR V D L 
Sbjct: 119 GMTNPPYILEHLEEMAKILRHPRVYSFLHVPVQSASDSVLMDMKREYCQADFRHVTDFLK 178

Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 400
           E VPG+ IATD+ICGFP ET++DF +T+ L++EYKFP + I+QF+PRPGTPAA+M ++P+
Sbjct: 179 ERVPGVTIATDVICGFPTETEDDFEETMKLVEEYKFPSLFINQFFPRPGTPAAKMPRIPA 238

Query: 401 AVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
            +VK+R+++++ +F ++ PY      ++++ +TE + D  + V   +F
Sbjct: 239 QLVKQRTKKISELFHSYRPYDHKMSEIQQVLVTETSHDQQYYVGHNKF 286


>gi|440300691|gb|ELP93138.1| radical sam protein, putative [Entamoeba invadens IP1]
          Length = 441

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 172/379 (45%), Positives = 243/379 (64%), Gaps = 8/379 (2%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYAL--TDNSEEADIW--LINTCTVKSPSQSAMDTLIAK 120
           TFGCSHN SDSE M   L+  GY L   D+  E +    ++N+CTVK+PSQ +++ +  K
Sbjct: 16  TFGCSHNVSDSEVMQKDLTEAGYILDKADSPLEGNYTAVVVNSCTVKNPSQQSIEQIKKK 75

Query: 121 CKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           C+    P+V+AGCVPQ   +  K  +  SIVGV Q+ ++ + VE  ++G     L R  L
Sbjct: 76  CEEMHIPVVLAGCVPQADPKVFKCSKNCSIVGVDQLHKIKDAVESAVRGEGATYLERGPL 135

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
             +D  + + +  ++I+    GC  ACTYCKTKHARG L SY +  ++ R++  I +GVK
Sbjct: 136 VDIDSYE-KSSPLIDIIVTCTGCENACTYCKTKHARGGLRSYPIIDIIKRIKKSINEGVK 194

Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
           E+ L+ ED GAYG DIG   P +L  +   +  +G  M+RIGM NPP+I+++  EI EV 
Sbjct: 195 ELRLTGEDIGAYGMDIGDTFPHMLKEMCDVV--EGKAMIRIGMVNPPYIIKYFDEIVEVF 252

Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
           +  CVY F+H+P+QSGS  VL AM R+YT  +F  V   L + +P + IATDIICGFP E
Sbjct: 253 KRKCVYKFIHIPIQSGSTQVLEAMKRKYTREEFDDVCARLRKCIPEITIATDIICGFPTE 312

Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 419
           TDED   T++ +K ++FP V+ISQ   RPGTPAA+MK V S V K+RSRE+T  F+++ P
Sbjct: 313 TDEDHKMTLDCLKVHQFPIVNISQMCIRPGTPAAQMKPVNSKVKKQRSREVTEYFDSYFP 372

Query: 420 YLGMEGRVERIWITEIAAD 438
           Y  M G+  ++WI E+A D
Sbjct: 373 YKNMVGKTCQVWINEMAHD 391


>gi|402865946|ref|XP_003897161.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
           [Papio anubis]
          Length = 629

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 150/255 (58%), Positives = 199/255 (78%), Gaps = 2/255 (0%)

Query: 194 EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR 253
           EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +    +GV E+WL+SEDTGAYGR
Sbjct: 259 EIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGR 318

Query: 254 DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
           DIG NLP LL  +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQ
Sbjct: 319 DIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQ 376

Query: 314 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373
           S SD+VL  M REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +TV L++E
Sbjct: 377 SASDSVLMEMKREYCVADFKRVVDFLKEKVPGLTIATDIICGFPGETDQDFQETVKLVEE 436

Query: 374 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWIT 433
           YKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ VF +++PY    G  +++ +T
Sbjct: 437 YKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRVFHSYSPYNHKIGERQQVLVT 496

Query: 434 EIAADGIHLVRLEQF 448
           E + D    V   +F
Sbjct: 497 EESFDSKFYVAHNRF 511



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 88/113 (77%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 60  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLK 167
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+K
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIK 172


>gi|388491006|gb|AFK33569.1| unknown [Lotus japonicus]
          Length = 180

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 149/167 (89%), Positives = 161/167 (96%)

Query: 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
           MLRIGMTNPPF LEHLKEIAE+LRHPCVYSFLHVPVQSGSD +LSAMNREYT+S+FRTVV
Sbjct: 1   MLRIGMTNPPFTLEHLKEIAEILRHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFRTVV 60

Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396
           DTL ELVPGMQIATDIICGFPGETDEDF+QTVNLIKEYKF QVHISQFYPRPGTPAARMK
Sbjct: 61  DTLTELVPGMQIATDIICGFPGETDEDFSQTVNLIKEYKFSQVHISQFYPRPGTPAARMK 120

Query: 397 KVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           KVPS VVK+RSRELT+VFEAFTPY GMEG+VERIWIT++A+DG+HLV
Sbjct: 121 KVPSNVVKRRSRELTNVFEAFTPYSGMEGKVERIWITDVASDGVHLV 167


>gi|302806527|ref|XP_002985013.1| hypothetical protein SELMODRAFT_424158 [Selaginella moellendorffii]
 gi|300147223|gb|EFJ13888.1| hypothetical protein SELMODRAFT_424158 [Selaginella moellendorffii]
          Length = 353

 Score =  322 bits (824), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 168/261 (64%), Positives = 193/261 (73%), Gaps = 24/261 (9%)

Query: 164 ETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
           ETLKGHE RLL R  LP+LDLPKVR+NKFVEI+PINVGCLGACTYCKTKHARGHLGSYTV
Sbjct: 24  ETLKGHEARLLRRDALPSLDLPKVRKNKFVEIIPINVGCLGACTYCKTKHARGHLGSYTV 83

Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
           ++LV R++TV+++G               RDIG N+P LL A+VA LP            
Sbjct: 84  DTLVQRLKTVVSEG---------------RDIGANIPALLRALVAALPHRQKY------- 121

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           N P +  HL        HPCVYSFLHV VQSG D+VL  M REYT S+FR +VDTL  LV
Sbjct: 122 NAPNL--HLTASGGNGCHPCVYSFLHVLVQSGRDSVLEGMKREYTFSEFRKIVDTLTRLV 179

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
           P + IATDIICGFPGET EDF++ + LI+EY FPQVHISQFYPRPGTPAA MK+VP+  V
Sbjct: 180 PEIHIATDIICGFPGETSEDFDRIMELIREYTFPQVHISQFYPRPGTPAALMKRVPTLEV 239

Query: 404 KKRSRELTSVFEAFTPYLGME 424
           KKRSR LTS+FE+FTPY GME
Sbjct: 240 KKRSRSLTSLFESFTPYAGME 260


>gi|302806569|ref|XP_002985034.1| hypothetical protein SELMODRAFT_424054 [Selaginella moellendorffii]
 gi|300147244|gb|EFJ13909.1| hypothetical protein SELMODRAFT_424054 [Selaginella moellendorffii]
          Length = 613

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 181/369 (49%), Positives = 223/369 (60%), Gaps = 48/369 (13%)

Query: 88  ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGV 147
           A++D+ + AD+WLINTCTVK+P+   M+TLI K K+A  PLV +     G +  +     
Sbjct: 2   AISDSPQRADLWLINTCTVKAPT---METLIRKGKAASIPLVDSWMRSSGFKRSRS---- 54

Query: 148 SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 207
                Q+         ETLKGHE  LL R  LP+LDLPKV +NKFVEI+PINVGCLGACT
Sbjct: 55  ----CQRHRSAANTAGETLKGHEAWLLRRDALPSLDLPKVCKNKFVEIIPINVGCLGACT 110

Query: 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267
           YCKTKHARGHLGSYTV++LV R++TV+++G               RDIG N+P LL A+V
Sbjct: 111 YCKTKHARGHLGSYTVDTLVQRLKTVVSEG---------------RDIGANIPALLCALV 155

Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 327
           A LP            N P +  HL        HPCVYSFLHV VQSG D+VL  M REY
Sbjct: 156 AALPHRQKY-------NAPNL--HLTASGGNGCHPCVYSFLHVLVQSGRDSVLEGMKREY 206

Query: 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
           T S+FR +VDTL  LVP + IATD+ICGFPGET EDF++ + LI+EY FPQVHISQFYPR
Sbjct: 207 TFSEFRKIVDTLTRLVPEIHIATDVICGFPGETSEDFDRIMELIREYTFPQVHISQFYPR 266

Query: 388 PGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME-----------GRVERIWITEIA 436
           P    +      +    +      S  E   P+L              G+  R+W+T  A
Sbjct: 267 PVFILSISLDRNTGGSNETGSNARS--EEMKPFLDKSVRIVHSLRRNGGKTYRVWVTNTA 324

Query: 437 ADGIHLVRL 445
           ADGIHLV L
Sbjct: 325 ADGIHLVGL 333


>gi|440904068|gb|ELR54635.1| CDK5 regulatory subunit-associated protein 1-like 1, partial [Bos
           grunniens mutus]
          Length = 302

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 143/246 (58%), Positives = 187/246 (76%), Gaps = 9/246 (3%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK          LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R +    +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296

Query: 288 ILEHLK 293
           ILEHL+
Sbjct: 297 ILEHLE 302


>gi|18978284|ref|NP_579641.1| hypothetical protein PF1912 [Pyrococcus furiosus DSM 3638]
 gi|397652439|ref|YP_006493020.1| 2-methylthioadenine synthetase [Pyrococcus furiosus COM1]
 gi|18894107|gb|AAL82036.1| hypothetical protein PF1912 [Pyrococcus furiosus DSM 3638]
 gi|393190030|gb|AFN04728.1| 2-methylthioadenine synthetase [Pyrococcus furiosus COM1]
          Length = 425

 Score =  290 bits (742), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 150/370 (40%), Positives = 224/370 (60%), Gaps = 11/370 (2%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++ +GC+ N++D E MAG L + GY + +  E ADI ++N+C VK P++  +   I +
Sbjct: 4   VYIENYGCARNRADGEIMAGLLLSSGYEIVEGEENADIVVVNSCAVKDPTEVKIARRIRE 63

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
                K ++V GC+P  + D  +    +++GV+ IDR+V+ VE  L+G +   V    ++
Sbjct: 64  LLDRGKKVIVTGCLPHVNPDAIDERVSAVLGVKSIDRIVQAVEYALRGEKLISVPDWRKR 123

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
            L  LD P++       ILPI  GCL  CTYC T+ ARG L SY+ E +V  V+  I  G
Sbjct: 124 NLDKLDFPRLSPRGVHFILPIAEGCLNGCTYCATRSARGVLKSYSPEKIVEWVKWAIRQG 183

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
            KE+WLS+EDTG YG DIG NL  LL+ I A    +G   +R+GM NP  +L+ L E+ E
Sbjct: 184 YKEIWLSAEDTGCYGFDIGTNLAKLLDEITA---IEGEFRIRVGMMNPNHVLKFLDELIE 240

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
             +   VY FLH+PVQSG + +L  M R YT+ +F  +V+      P + + TDII GFP
Sbjct: 241 AYKDEKVYKFLHLPVQSGDNEILRRMGRTYTVEEFEEIVNAFRREFPDLNLHTDIIVGFP 300

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV---- 413
           GE++E F +++ LIK  K  +V++S++ PRPGT AA+ K++P  VVK+RSR +  V    
Sbjct: 301 GESEEAFQRSLELIKRIKPDKVNVSRYSPRPGTIAAKWKQLPGWVVKERSRIMHRVRLQI 360

Query: 414 -FEAFTPYLG 422
            +E    Y+G
Sbjct: 361 SYEINQRYVG 370


>gi|14591622|ref|NP_143704.1| hypothetical protein PH1875 [Pyrococcus horikoshii OT3]
 gi|3258314|dbj|BAA30997.1| 432aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 432

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 147/375 (39%), Positives = 229/375 (61%), Gaps = 11/375 (2%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++ +GC+ N++D E MA  L   G+ + ++ EE++I ++N+C VK P++  +   I +
Sbjct: 11  VYIENYGCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIARRIRE 70

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
                K ++V GC+P  + D+ +    +I+GV+ IDR+V+ VE  ++G +   V    ++
Sbjct: 71  LLDNGKKVIVTGCLPHVNPDVIDERVSAILGVKSIDRIVQAVEYAMRGEKLISVPDWKKR 130

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
            L  LD P++       ILPI  GCL ACTYC T+ ARG L SY+ E ++G V+  I  G
Sbjct: 131 NLDKLDFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKSYSPEKIIGWVKWAIKQG 190

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
            KE+WLS+EDTG YG DIG NL  L++ I A    +G   +R+GM NP  +L+ L E+ +
Sbjct: 191 YKEIWLSAEDTGCYGFDIGTNLAKLIDEITA---IEGEFRIRVGMMNPNHVLKFLDELID 247

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
             +   VY FLH+PVQSG + +L  M R YT+ +F  +V       P + + TDII GFP
Sbjct: 248 AYKDEKVYKFLHLPVQSGDNEILRKMGRMYTVEEFEEIVKAFRREFPELNLHTDIIVGFP 307

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV---- 413
           GE++E F ++V LIK  +  +V++S++ PRPGT AA+ K++P  VVK+RSR L  +    
Sbjct: 308 GESEEAFQRSVELIKRIRPDKVNVSRYSPRPGTIAAKWKQLPGWVVKERSRLLHRIRLQI 367

Query: 414 -FEAFTPYLGMEGRV 427
            +E    Y+G + +V
Sbjct: 368 SYEINRKYIGKKVKV 382


>gi|14917063|sp|O59545.2|AMTAB_PYRHO RecName: Full=Probable threonylcarbamoyladenosine tRNA
           methylthiotransferase; AltName: Full=tRNA-t(6)A37
           methylthiotransferase
          Length = 425

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 147/375 (39%), Positives = 229/375 (61%), Gaps = 11/375 (2%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++ +GC+ N++D E MA  L   G+ + ++ EE++I ++N+C VK P++  +   I +
Sbjct: 4   VYIENYGCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIARRIRE 63

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
                K ++V GC+P  + D+ +    +I+GV+ IDR+V+ VE  ++G +   V    ++
Sbjct: 64  LLDNGKKVIVTGCLPHVNPDVIDERVSAILGVKSIDRIVQAVEYAMRGEKLISVPDWKKR 123

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
            L  LD P++       ILPI  GCL ACTYC T+ ARG L SY+ E ++G V+  I  G
Sbjct: 124 NLDKLDFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKSYSPEKIIGWVKWAIKQG 183

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
            KE+WLS+EDTG YG DIG NL  L++ I A    +G   +R+GM NP  +L+ L E+ +
Sbjct: 184 YKEIWLSAEDTGCYGFDIGTNLAKLIDEITA---IEGEFRIRVGMMNPNHVLKFLDELID 240

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
             +   VY FLH+PVQSG + +L  M R YT+ +F  +V       P + + TDII GFP
Sbjct: 241 AYKDEKVYKFLHLPVQSGDNEILRKMGRMYTVEEFEEIVKAFRREFPELNLHTDIIVGFP 300

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV---- 413
           GE++E F ++V LIK  +  +V++S++ PRPGT AA+ K++P  VVK+RSR L  +    
Sbjct: 301 GESEEAFQRSVELIKRIRPDKVNVSRYSPRPGTIAAKWKQLPGWVVKERSRLLHRIRLQI 360

Query: 414 -FEAFTPYLGMEGRV 427
            +E    Y+G + +V
Sbjct: 361 SYEINRKYIGKKVKV 375


>gi|14521928|ref|NP_127405.1| hypothetical protein PAB1134 [Pyrococcus abyssi GE5]
 gi|14916852|sp|Q9UXX9.1|AMTAB_PYRAB RecName: Full=Probable threonylcarbamoyladenosine tRNA
           methylthiotransferase; AltName: Full=tRNA-t(6)A37
           methylthiotransferase
 gi|5459148|emb|CAB50634.1| Hypothetical protein, UPF0004 family [Pyrococcus abyssi GE5]
 gi|380742568|tpe|CCE71202.1| TPA: 2-methylthioadenine synthetase [Pyrococcus abyssi GE5]
          Length = 425

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 224/370 (60%), Gaps = 11/370 (2%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY++ +GC+ N++D E MA  L   G+ +  + +E +I ++N+C VK P++  +   I +
Sbjct: 4   IYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKE 63

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
              + K ++V GC+P  + D+ +     I+GV+ IDR+++ VE  L+G +   V    ++
Sbjct: 64  LLDSGKKVIVTGCLPHVNPDVIDERVSGILGVKSIDRIIQAVEYALRGEKLISVPDWRKR 123

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
            L  LD P++       I+PI  GCL ACTYC T+ ARG L SY+ E +VG V+  I  G
Sbjct: 124 NLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAIKQG 183

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
            KE+WLS+EDTG YG DIG NL  LL+ I A    +G   +R+GM NP  +L+ L E+ E
Sbjct: 184 YKEIWLSAEDTGCYGFDIGTNLAKLLDEITA---IEGEFRVRVGMMNPNHVLKFLDELIE 240

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
             +   +Y FLH+PVQSG + +L  M R YT+ +F  +V    +  P + + TDII GFP
Sbjct: 241 AYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFP 300

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV---- 413
           GE DE F ++V LI+  +  +V++S++ PRPGT AA+ K++P  +VK+RSR L  +    
Sbjct: 301 GEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRIRLQI 360

Query: 414 -FEAFTPYLG 422
            +E    Y+G
Sbjct: 361 SYEINQKYIG 370


>gi|402582010|gb|EJW75956.1| hypothetical protein WUBG_13135, partial [Wuchereria bancrofti]
          Length = 240

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 139/240 (57%), Positives = 186/240 (77%), Gaps = 3/240 (1%)

Query: 94  EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 153
           E+A +W++N+CTVK+PS++ ++  + + +   K ++VAGCV Q   +L+ L+G+SIVGV+
Sbjct: 1   EDASLWILNSCTVKTPSETQLENTVKEARKLNKFIIVAGCVSQAEPNLQFLDGISIVGVK 60

Query: 154 QIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPKVRRNKFVEILPINVGCLGACTYCKTK 212
           QI+ V + VEETLKG+ VR L R+K  + L LPK+R+NKF+EIL I+ GCL  CTYCKTK
Sbjct: 61  QIECVTQAVEETLKGNCVRFLSRRKPNSNLLLPKIRKNKFIEILAISTGCLNHCTYCKTK 120

Query: 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272
            ARG+L SY ++SL+ R R   ADG KE+WL+SED GA+GRDI + LP LLNA+V E+ P
Sbjct: 121 SARGNLVSYPLDSLLERARNAFADGCKELWLTSEDLGAWGRDIDMVLPDLLNALV-EIIP 179

Query: 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 332
           +G  MLR+GMTNPP+IL+ L+EI+E+L HP VYSFLH+PVQS SDAVLS M REYT  DF
Sbjct: 180 EG-CMLRLGMTNPPYILDFLEEISEILNHPRVYSFLHIPVQSASDAVLSDMKREYTCIDF 238


>gi|57641999|ref|YP_184477.1| 2-methylthioadenine synthetase [Thermococcus kodakarensis KOD1]
 gi|57160323|dbj|BAD86253.1| probable 2-methylthioadenine synthetase [Thermococcus kodakarensis
           KOD1]
          Length = 427

 Score =  281 bits (718), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 223/370 (60%), Gaps = 11/370 (2%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++++GC+ N++D E M   L   GY L ++ E AD  ++NTC VK P++  M   I +
Sbjct: 4   VYVESYGCTRNKADGEIMEAILLRAGYELAESPESADYVVVNTCAVKDPTEHKMARRIRE 63

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
              + K ++  GC+   + D+ +     ++GV+ IDR+ E ++   +G +   V     +
Sbjct: 64  LLDSGKKVIATGCLVHVNPDVIDPRVSGMLGVKSIDRIAEAIDLAERGGKLVSVEGWKER 123

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
           K+  L+LP++ ++  V ++PI+ GCL ACTYC T+ ARG L SY  E ++  V+  +A G
Sbjct: 124 KVDKLELPRLWKSGVVFVVPISEGCLNACTYCATRFARGVLKSYKPELVLKWVKEALARG 183

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
            KE+ LSSEDTG YG DIG NL  LL+ I A    +G   +R+GM NP  +++ L E+ E
Sbjct: 184 YKEIQLSSEDTGCYGFDIGTNLAELLDEITA---IEGDFRIRVGMMNPNHVIKFLDELIE 240

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
           V + P VY FLH+PVQSG + VL  M R YT+ +F  +V      +PG+ + TDII GFP
Sbjct: 241 VYQDPKVYKFLHLPVQSGDNEVLRRMGRNYTVEEFEEIVSEFRRKIPGLNLNTDIIVGFP 300

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR-----ELTS 412
           GE +E F  TV L+K  +  ++++S++ PRPGT AA+ K++P   VK+RSR      L  
Sbjct: 301 GEGEEAFQNTVELVKRVRPDKINVSRYSPRPGTIAAKWKQLPGWKVKERSRILHRLRLQI 360

Query: 413 VFEAFTPYLG 422
            +E    YLG
Sbjct: 361 AYEINQTYLG 370


>gi|260841717|ref|XP_002614057.1| hypothetical protein BRAFLDRAFT_67358 [Branchiostoma floridae]
 gi|229299447|gb|EEN70066.1| hypothetical protein BRAFLDRAFT_67358 [Branchiostoma floridae]
          Length = 316

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 135/212 (63%), Positives = 165/212 (77%), Gaps = 5/212 (2%)

Query: 188 RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSED 247
           RRN  V I P N  CL  CTYCKTKHARG LGSY  E +V R R    +GV E+WL+SED
Sbjct: 22  RRN--VLIFPSN-SCLNQCTYCKTKHARGELGSYPPEEIVSRARQSFEEGVVEIWLTSED 78

Query: 248 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 307
           TGAYG+DIGV LP LL  +V E+ P+G  MLR+GMTNPP+ILEHL+E+A++L HP VY+F
Sbjct: 79  TGAYGKDIGVTLPELLWRLV-EVIPEGC-MLRVGMTNPPYILEHLEEMAKILSHPRVYAF 136

Query: 308 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 367
           LHVPVQ+ SD+VL  M REY LSDF+ VVD L E VP + IATD+ICGFP ET EDF +T
Sbjct: 137 LHVPVQAASDSVLMDMRREYCLSDFKQVVDFLKERVPAVTIATDVICGFPTETAEDFEET 196

Query: 368 VNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 399
           + L++EYKFP + I+QF+PRPGTPAA+M++VP
Sbjct: 197 LQLVEEYKFPSLFINQFFPRPGTPAAKMRRVP 228


>gi|315231263|ref|YP_004071699.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
           [Thermococcus barophilus MP]
 gi|315184291|gb|ADT84476.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
           [Thermococcus barophilus MP]
          Length = 424

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 146/373 (39%), Positives = 229/373 (61%), Gaps = 16/373 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           ++++T+GC+ N++D+E M   L   GY + D  + AD  ++NTC VK P+++ M   I +
Sbjct: 3   VHIETYGCTRNKADAEIMEALLVNAGYEIVD-LDSADYVIVNTCAVKDPTENHMRKRIKE 61

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
              A K ++V GC+P  + +  +    +I+GV+ I+R+ E +E   +G ++  + ++ + 
Sbjct: 62  LLDAGKKVIVTGCLPHINIEAIDERVSAILGVKSINRITEAIELAERGVKLVDVEQRGID 121

Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
            L+LP++ ++K V ++PI+ GCL ACTYC T+ ARG L SY+ E +V  V+  +A G KE
Sbjct: 122 KLELPRMWKSKVVFVVPISEGCLNACTYCATRFARGILKSYSPEKIVRWVKEALAKGYKE 181

Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
           + LSSEDTG YG DIG NL  LL+ + +    +G   +R+GM NP  +++ L E+ +  +
Sbjct: 182 IQLSSEDTGCYGFDIGTNLAELLDELTS---IEGEFRIRVGMMNPNHVIKFLDELIDAYK 238

Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
              +Y FLH+PVQSG + +L  M R YT+ DF T+V    +  P + + TDII GFPGE+
Sbjct: 239 DEKIYKFLHLPVQSGDNEILRKMGRTYTVEDFETIVKAFRKEFPELNLNTDIIVGFPGES 298

Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV----KKRSRELTSV--- 413
           +E F  TV LIK  K  ++++S+F PRPGT AARM   P  +V    K+RSR L  +   
Sbjct: 299 EEAFQNTVELIKRVKPDKINVSRFSPRPGTLAARM---PDQIVGWRAKERSRYLHRLRLA 355

Query: 414 --FEAFTPYLGME 424
             +E    Y+G E
Sbjct: 356 ISYEINQKYVGRE 368


>gi|337284314|ref|YP_004623788.1| hypothetical protein PYCH_08310 [Pyrococcus yayanosii CH1]
 gi|334900248|gb|AEH24516.1| hypothetical protein PYCH_08310 [Pyrococcus yayanosii CH1]
          Length = 428

 Score =  277 bits (709), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 224/375 (59%), Gaps = 11/375 (2%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           ++++ +GC+ N++D E+MAG L   G+ + D  EEA+  ++NTC VK P++  M   I +
Sbjct: 4   VHIENYGCARNRADGEFMAGILMLAGHEIVDTIEEAEYVVVNTCAVKDPTEVKMARRIRE 63

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL---HRK 177
              A K ++V GC+P  +  + +    +++GV+ IDR+   +E   +G ++  +    ++
Sbjct: 64  LLDAGKKVIVTGCLPHVNPSVIDERASAVLGVKSIDRIAYAIETAERGEKIISVPDWRKR 123

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
            L  L LP++  +    ++PI  GCL ACTYC T+ ARG L SY  E +V  V+  I  G
Sbjct: 124 NLDKLTLPRLPTSGISFVVPIAEGCLNACTYCATRLARGVLKSYRPELIVNWVKWAIERG 183

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
            +E+WLS+EDTG YG DIG NL  LL+ I A    DG   +R+GM NP  +++ L E+ E
Sbjct: 184 YREIWLSAEDTGCYGFDIGTNLAELLDEITA---IDGEFRIRVGMMNPNHVIKFLDELIE 240

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
             +   +Y FLH+PVQSG + +L  M R YT+ +F  +V       P + + TD+I GFP
Sbjct: 241 AYQDEKIYKFLHLPVQSGDNEILRRMGRTYTVEEFEEIVAEFRRAFPDLNLHTDVIVGFP 300

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV---- 413
           GE +E F +TV LI+  +  +V++S++ PRPGT AA+ K++P  ++K+RSR L  +    
Sbjct: 301 GEDEEAFQRTVALIERIRPDKVNVSRYSPRPGTVAAKWKQLPGWIIKERSRLLHHLRLRI 360

Query: 414 -FEAFTPYLGMEGRV 427
            +E    Y+G   +V
Sbjct: 361 SYEINMEYIGKRLKV 375


>gi|332158106|ref|YP_004423385.1| hypothetical protein PNA2_0464 [Pyrococcus sp. NA2]
 gi|331033569|gb|AEC51381.1| hypothetical protein PNA2_0464 [Pyrococcus sp. NA2]
          Length = 429

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 136/348 (39%), Positives = 217/348 (62%), Gaps = 6/348 (1%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++ +GC+ N++D E MA  L   G+ +  + +E++I ++N+C VK P++  +   I +
Sbjct: 8   VYIENYGCARNRADGEIMAALLHLAGHEIVYDLDESEIVIVNSCAVKDPTERKIARRIRE 67

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
                K ++V GC+P  + ++ +    +++GV+ IDR+V+ VE  ++G +   V    ++
Sbjct: 68  LLDEGKKVIVTGCLPHVNPEVIDERVSAVLGVKSIDRIVQAVEYAIRGEKLISVPDWRKR 127

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
            L  LDLP++       I+PI  GCL ACTYC T+ ARG L SY+ E +V  V+  I  G
Sbjct: 128 NLDKLDLPRLSLRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVEWVKWAIKQG 187

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
            KE+WLS+EDTG YG DIG NL  LL+ I A    +G   +R+GM NP  +++ L E+ E
Sbjct: 188 YKEIWLSAEDTGCYGFDIGTNLAKLLDEITA---IEGEFRIRVGMMNPNHVIKFLDELIE 244

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
             +   VY FLH+PVQSG + +L  M R YT+ +F  +V+   +  P + + TDII GFP
Sbjct: 245 AYQDDKVYKFLHLPVQSGDNEILRRMGRNYTVEEFEEIVNAFRKKFPDLNLHTDIIVGFP 304

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
           GE++E F ++V LIK  K  +V++S++ PRPGT AA+ K++P  ++K+
Sbjct: 305 GESEEAFQKSVELIKRIKPDKVNVSRYSPRPGTIAAKWKQLPGWLIKE 352


>gi|407462932|ref|YP_006774249.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus
           koreensis AR1]
 gi|407046554|gb|AFS81307.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus
           koreensis AR1]
          Length = 422

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 154/388 (39%), Positives = 236/388 (60%), Gaps = 17/388 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++++GCS + +DSE ++G +   G+ L ++SEE+D+ ++ TC+VK  + + M   I +
Sbjct: 4   IFVESYGCSASFADSEMISGLILNGGHTLVEDSEESDLNIVVTCSVKDATANKM---IHR 60

Query: 121 CKSAK-KPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
            KS K KPLVVAGC+P+  ++  E   E  S++G   + + ++V++ TL+G +   L   
Sbjct: 61  IKSLKTKPLVVAGCLPKAEKETVERFSENASLLGPNSLGKTLQVIDSTLQGRKEIALEDS 120

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
            L  + LPKVR N  V I+ I  GC+  CT+C+TK ++G L SY +  +V +V+T I +G
Sbjct: 121 DLSKVGLPKVRLNPAVGIVEIASGCMSECTFCQTKISKGDLQSYRLGDIVRQVKTEIDEG 180

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
            KE+WL+S D G YG DIG +LP L+NA V+E+P D   M+R+GM NP ++    +++ E
Sbjct: 181 CKEIWLTSTDNGCYGLDIGTDLPALINA-VSEIPED--FMVRVGMMNPMYMPRIKEKLIE 237

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              +  V+ FLH+PVQSGSD VL  M R +T   FR +V    E  P   I+TDII GFP
Sbjct: 238 SYENDKVFKFLHIPVQSGSDKVLQDMKRGHTAGTFREIVKKAKERFPNFTISTDIIVGFP 297

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 417
            ET EDF +TV L+ E +   V++S++  RPGT AA  +++  A VK RS+E+       
Sbjct: 298 SETREDFEKTVELLDETRPDVVNLSKYSARPGTEAAEWEQIDVAEVKSRSKEIFEQINKI 357

Query: 418 T-----PYLGMEGRVERIWITEIAADGI 440
           +      ++G +G V      E   DGI
Sbjct: 358 SLDNNKKWIGWKGNV---LFDEKTEDGI 382


>gi|407465270|ref|YP_006776152.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus sp. AR2]
 gi|407048458|gb|AFS83210.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus sp. AR2]
          Length = 422

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 149/377 (39%), Positives = 235/377 (62%), Gaps = 18/377 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++ +GCS + +DSE ++G +   G+ LTDNSEE+D+ ++ TC+VK  + + M   I  
Sbjct: 4   IFVEAYGCSASFADSEMISGLILNGGHTLTDNSEESDLNIVVTCSVKDSTANKMMYRINS 63

Query: 121 CKSAKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
            KS  KPL+VAGC+P+  ++  E   E  S++G   + + ++V+  TL G +   L    
Sbjct: 64  LKS--KPLIVAGCLPKAEKETVEKFSENASLLGPNSLGKTLQVINTTLGGQKQVALEDSD 121

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
           L  + LPKVR N  V I+ I  GC+  CT+C+TK ++G L SY +  +V +V+T I +G 
Sbjct: 122 LSKVGLPKVRLNPSVGIVEIASGCMSECTFCQTKLSKGDLSSYRLGDIVRQVQTEIKEGC 181

Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           KEVWL+S D G YG DIG +LP L+NA V+E+P D   M+R+GM NP ++    +++ + 
Sbjct: 182 KEVWLTSTDNGCYGFDIGTDLPTLINA-VSEIPED--FMIRVGMMNPMYMPRIKEKLIDS 238

Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
             +  V+ FLH+PVQSGSD VL+ M R +T   +R +V  + E      I+TDII GFP 
Sbjct: 239 YDNDKVFKFLHIPVQSGSDKVLNDMKRGHTSKTYREIVSKIKERFVDFTISTDIIIGFPS 298

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 418
           ET+E+F +T++L+ E K   V++S++  RPGT AA  +++ +A VK+R++    +FE  +
Sbjct: 299 ETEEEFQKTISLLDETKPDVVNLSKYSARPGTEAAEWEQIDAAEVKRRTK---IIFEQIS 355

Query: 419 --------PYLGMEGRV 427
                    ++G +GRV
Sbjct: 356 KLSMDSNQKWIGWKGRV 372


>gi|341582604|ref|YP_004763096.1| 2-methylthioadenine synthetase [Thermococcus sp. 4557]
 gi|340810262|gb|AEK73419.1| 2-methylthioadenine synthetase [Thermococcus sp. 4557]
          Length = 425

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 142/353 (40%), Positives = 212/353 (60%), Gaps = 6/353 (1%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           ++++T+GC+ N++D+E M   L + GY L +  E AD  ++NTC VK P++  M   I +
Sbjct: 4   VHVETYGCTRNRADAEMMEAILVSAGYGLAETPETADYVVVNTCAVKDPTEKHMRERIKE 63

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
              A + ++V GC+P  + D  +     I+GV+ IDR+ E +    +G +   V     +
Sbjct: 64  LLDAGRKVIVTGCLPHVNPDAIDSRVSGILGVKSIDRIAEAISLAERGGKLVSVEGWRER 123

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
            +  L+LP++ +     ++PI+ GCL ACTYC T+ ARG L SY  E +V  V+  +A G
Sbjct: 124 NIDKLELPRLWKGGVAFVVPISEGCLNACTYCATRFARGVLRSYKPELVVKWVKEALARG 183

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
            +E+ LSSEDTG YG DIG NL  LL+ I A    +G   +R+GM NP  +L  L E+ +
Sbjct: 184 YREIQLSSEDTGCYGFDIGTNLAELLDEITA---IEGDFRVRVGMMNPNHVLRFLDELVD 240

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
                 VY F+H+PVQSG D VL  M R YT+  F  +V T  + V  + + TDII GFP
Sbjct: 241 AYTDEKVYRFIHLPVQSGDDEVLKRMGRTYTVEQFEEIVRTFRKKVRDLNLNTDIIVGFP 300

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 410
           GETDE F  TV L++  +  ++++S++ PRPGT AA+ K++P    K+RSREL
Sbjct: 301 GETDEAFRNTVGLVERVRPDKINVSRYSPRPGTIAAKWKQIPGWKAKERSREL 353


>gi|409096282|ref|ZP_11216306.1| 2-methylthioadenine synthetase [Thermococcus zilligii AN1]
          Length = 424

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 148/370 (40%), Positives = 215/370 (58%), Gaps = 11/370 (2%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           ++++T+GC+ N++D E M   L   GY L +  E+AD  ++NTC VK P++  M   I +
Sbjct: 4   VHVETYGCTRNRADGEIMEAILVRAGYELAETPEDADYVVVNTCAVKDPTEKHMKERIKE 63

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
              + K ++V GC+P  +    +     I+GV+ IDR+ E VE   +G +   V     +
Sbjct: 64  LLDSGKRVIVTGCLPHVNPSTIDPRVSGILGVKSIDRIAEAVERAERGEKFVSVEGWRER 123

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
               L+LP++ ++    ++PI  GCL ACTYC T  ARG L SY  E +V  V+  +  G
Sbjct: 124 NSDKLELPRLWKSGVAFVVPIGEGCLNACTYCSTHFARGVLKSYRPELIVKWVKEALIRG 183

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
            KE+ LSSEDTG YG DIG NL  LL  I A    +G   +R+GM NP  ++  L E+ +
Sbjct: 184 YKEIQLSSEDTGCYGFDIGTNLAKLLEEITA---IEGDFRVRVGMMNPNHVIRILDELID 240

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
             +   VY FLH+PVQSG + VL  M R YT+ +F  +V      VPG+ + TDII GFP
Sbjct: 241 AYQSGKVYKFLHLPVQSGDNGVLRRMGRNYTVEEFEEIVGEFRRKVPGLNLNTDIIVGFP 300

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV---- 413
           GETDE F  T+ L+K  K  ++++S++ PRPGT AA+ K++P   VK+RSR L  +    
Sbjct: 301 GETDEAFENTLELVKRVKPDKINVSRYSPRPGTIAAKWKQLPGWKVKERSRVLHRLRLGI 360

Query: 414 -FEAFTPYLG 422
            +E    YLG
Sbjct: 361 AYEINQSYLG 370


>gi|223478016|ref|YP_002582106.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
           [Thermococcus sp. AM4]
 gi|214033242|gb|EEB74070.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
           [Thermococcus sp. AM4]
          Length = 424

 Score =  271 bits (692), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 145/370 (39%), Positives = 223/370 (60%), Gaps = 11/370 (2%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           ++++++GCS N++D E M   L   G+ L +  E AD  ++NTC VK P++  M   I +
Sbjct: 4   VHVESYGCSRNKADGEIMEALLLKAGHELVETPENADYVVVNTCAVKDPTEFKMAKRIRE 63

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH--RKK 178
              + K ++  GC+   + D  +     I+GV+ IDR+ E +E   +G ++  +   R++
Sbjct: 64  LLDSGKKVIATGCLVHVNPDAIDPRVSGILGVKSIDRIAEAIEIAERGGKLVSVEGWRER 123

Query: 179 LP-ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
            P  L+LP++ +     ++PI+ GCL ACTYC T+ ARG L SY  E +V  V+  +A G
Sbjct: 124 NPDKLELPRLWKPGVAFVVPISEGCLNACTYCATRFARGVLKSYKPELVVKWVKEALARG 183

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
            +E+ LSSEDTG YG DIG NL  LL+ I A    +G   +R+GM NP  +L+ L E+ E
Sbjct: 184 YREIILSSEDTGCYGFDIGTNLAELLDEITA---IEGEFRVRVGMMNPNHVLKFLDELIE 240

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
             +   VY FLH+PVQSG + +L  M R YT+ +F+ +V    + +P + + TDII GFP
Sbjct: 241 AYQDEKVYRFLHLPVQSGDNEILRRMGRNYTVEEFKEIVRAFRKKIPELNLNTDIIVGFP 300

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV---- 413
           GET+E F  TV L+K  K  ++++S++  RPGT AAR K++P  +VK+RSREL  +    
Sbjct: 301 GETEEAFRNTVELVKRIKPDKINVSRYSARPGTIAARWKQLPGWLVKERSRELHRLRLQI 360

Query: 414 -FEAFTPYLG 422
            +E    Y+G
Sbjct: 361 AYEINKAYVG 370


>gi|393795212|ref|ZP_10378576.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
           BG20]
          Length = 422

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 147/376 (39%), Positives = 230/376 (61%), Gaps = 16/376 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++ +GCS + +DSE ++G +   G+ +  NS E+D+ ++ TC+VK  + + M   I  
Sbjct: 4   IFVEAYGCSASFADSEMISGLIVNGGHTIAKNSTESDLNIVVTCSVKDSTANKMIHRIKS 63

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLLHR 176
            KS  KPLVVAGC+P+   +L  +E +S    ++G   + + ++V++ TL+G +   L  
Sbjct: 64  LKS--KPLVVAGCLPKA--ELSTVEKISKNASLLGPNSLGKTLQVIDSTLRGTKFVALED 119

Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
             L  + LPKVR N+ V I+ I  GC+  C++C+TK A+G L SY +  +V +V T ++D
Sbjct: 120 TDLSKVGLPKVRLNEVVGIVEIASGCMSECSFCQTKLAKGDLQSYRIGDIVRQVETEVSD 179

Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
           G KE+WL+S D G YG DI  +LP L+ A V+E+P D   M+R+GM NP ++     E+ 
Sbjct: 180 GCKEIWLTSTDNGCYGFDINTDLPTLVKA-VSEIPED--FMIRVGMMNPMYMPRIKNELI 236

Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           E      VY FLH+PVQSGSD VL+ M R +T++ F+ VV    E      I+TDII GF
Sbjct: 237 ESFSSDKVYKFLHIPVQSGSDKVLNDMRRGHTVNTFKEVVKKARERYTDFTISTDIIVGF 296

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR----ELTS 412
           P ET EDF +TV L+ E     V++S++  RPGT AA  +++ ++ VK+RSR    ++  
Sbjct: 297 PSETREDFEKTVELLNETSPDIVNLSKYSARPGTEAAEWEQIEASEVKRRSRIIFNQINK 356

Query: 413 V-FEAFTPYLGMEGRV 427
           +  E    ++G +G+V
Sbjct: 357 ISLENNQKWIGWKGKV 372


>gi|161528769|ref|YP_001582595.1| MiaB-like tRNA modifying enzyme [Nitrosopumilus maritimus SCM1]
 gi|160340070|gb|ABX13157.1| MiaB-like tRNA modifying enzyme [Nitrosopumilus maritimus SCM1]
          Length = 422

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 145/353 (41%), Positives = 223/353 (63%), Gaps = 9/353 (2%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++++GCS + +DSE ++G +   G+ L ++S E+D+ ++ TC+VK  + + M   + +
Sbjct: 4   IFVESYGCSASFADSEMISGLILNGGHTLVEDSSESDLNVVVTCSVKDATANKM---VHR 60

Query: 121 CKSAK-KPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
            KS K KPLVVAGC+P+  ++  E   E  S++G   + + ++V++ TLKG +   L   
Sbjct: 61  IKSLKTKPLVVAGCLPKAEKETVEKFSENASLLGPNSLGKTLQVIDSTLKGRKKIALEDT 120

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
            L  + LPKVR N  V I+ I  GC+  CT+C+TK ++G L SY +  +V +V+T I +G
Sbjct: 121 DLSKVGLPKVRLNPAVGIVEIASGCMSECTFCQTKISKGDLQSYRLGDIVRQVKTEINEG 180

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
            KEVWL+S D G YG DIG +LP L+NA V+E+P +   M+R+GM NP ++    +++ E
Sbjct: 181 CKEVWLTSTDNGCYGFDIGTDLPSLINA-VSEIPEE--FMIRVGMMNPMYMPRIKEKLIE 237

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              +  V+ FLH+PVQSGSD VL  M R +T   FR +V    E  P   I+TDII GFP
Sbjct: 238 SYDNDKVFKFLHIPVQSGSDKVLHDMKRGHTAGTFREIVKKARERFPDFTISTDIIVGFP 297

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 410
            ET EDF +TV L+ E +   V++S++  RPGT AA  +++  A VK RS+ +
Sbjct: 298 SETKEDFEKTVELLDETRPDVVNLSKYSARPGTEAAEWEQIDVAEVKSRSKRI 350


>gi|240104185|ref|YP_002960494.1| RNA modification enzyme, MiaB family (MiaB) [Thermococcus
           gammatolerans EJ3]
 gi|239911739|gb|ACS34630.1| RNA modification enzyme, MiaB family (MiaB) [Thermococcus
           gammatolerans EJ3]
          Length = 424

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 139/353 (39%), Positives = 217/353 (61%), Gaps = 6/353 (1%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++++GCS N++D E M   L   GY L +  ++AD  ++NTC VK P++  M   I +
Sbjct: 4   VYVESYGCSRNRADGEIMEAILLRAGYELAEGPDKADYVVVNTCAVKDPTELKMVRRIRE 63

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH--RKK 178
              + K ++  GC+   + +  +     I+GV+ IDR+ E +    +G ++  +   R++
Sbjct: 64  LLDSGKKVIATGCLVHVNPEAIDPRVSGILGVKSIDRIAEAISVAERGEKLISVEGWRER 123

Query: 179 LP-ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
            P  L+LP++ +     ++PI+ GCL ACTYC T+ ARG L SY  E ++  VR  ++ G
Sbjct: 124 NPDKLELPRLWKPGVSFVVPISEGCLNACTYCATRFARGVLKSYKPELVIKWVREAVSRG 183

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
            +E+ LSSEDTG YG DIG NL  LL+ I A    +G   +R+GM NP  +L+ L E+ E
Sbjct: 184 YREIILSSEDTGCYGFDIGTNLAELLDEITA---IEGDFRVRVGMMNPNHVLKFLDELIE 240

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
             +   +Y FLH+PVQSG + +L  M R YT+ +F  +V+   + +P + + TDII GFP
Sbjct: 241 AYQDEKIYKFLHLPVQSGDNEILRRMGRTYTVEEFEEIVNAFRKKIPDLNLNTDIIVGFP 300

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 410
           GE+DE F  TV L+K  K  ++++S++  RPGT AAR K++P  +VK+RSREL
Sbjct: 301 GESDEAFRNTVELVKRVKPDKINVSRYSARPGTIAARWKQLPGWLVKERSREL 353


>gi|375082214|ref|ZP_09729282.1| 2-methylthioadenine synthetase [Thermococcus litoralis DSM 5473]
 gi|374743102|gb|EHR79472.1| 2-methylthioadenine synthetase [Thermococcus litoralis DSM 5473]
          Length = 422

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 145/376 (38%), Positives = 224/376 (59%), Gaps = 13/376 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           ++++T+GC+ N++D+E M   L   GY + +  + A+  ++NTC VK P++  M   I +
Sbjct: 3   VHIETYGCTRNKADAEIMEALLLKAGYEIAE-LDSAEYVVVNTCAVKDPTEKHMSKRIKE 61

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
              + K ++V GC+P  + D  +     I+GV+ IDR+VE ++   KG +   V     +
Sbjct: 62  LIDSGKRVIVTGCLPHVNPDAIDERASGILGVKSIDRIVEAIQLAEKGEKLISVEGWKER 121

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
            +  L+LP++ +   V ++PI+ GCL ACTYC T+ ARG L SY  E +V  V+  +A G
Sbjct: 122 SIDKLELPRIWKGGVVFVVPISEGCLNACTYCATRFARGVLKSYKPELIVKWVKEALAKG 181

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
            KE+ LSSEDTG YG DIG NL  LL+ I A    +G   +R+GM NP   ++ L E+ E
Sbjct: 182 YKEIQLSSEDTGCYGFDIGTNLAKLLDEITA---IEGDFRVRVGMMNPNNAIKILDELVE 238

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
           V +   +Y FLH+PVQSG + +L  M R YT+ +F  +V    + +  + + TDII GFP
Sbjct: 239 VYKDEKIYKFLHLPVQSGDNEILRKMGRTYTVEEFEEIVKEFRKHIKDLNLNTDIIVGFP 298

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR-----ELT 411
           GE++E F  TV L+K  K  ++++S+F PRPGT AA+M+ ++    VK+RSR      L+
Sbjct: 299 GESEEAFQNTVELVKRIKPDKINVSRFSPRPGTLAAKMEGQIVGWKVKERSRYLHRLRLS 358

Query: 412 SVFEAFTPYLGMEGRV 427
             +E    Y+G E  V
Sbjct: 359 ISYEINKRYIGREVEV 374


>gi|390961316|ref|YP_006425150.1| MiaB-like tRNA modifying enzyme, archaeal-type [Thermococcus sp.
           CL1]
 gi|390519624|gb|AFL95356.1| MiaB-like tRNA modifying enzyme, archaeal-type [Thermococcus sp.
           CL1]
          Length = 424

 Score =  268 bits (684), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 139/348 (39%), Positives = 206/348 (59%), Gaps = 6/348 (1%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           ++++T+GC+ N++D+E M   L   GY L +  E AD  ++NTC VK P++  M   I +
Sbjct: 4   VHVETYGCTRNRADAEMMEAILLRAGYELVETPESADYVVVNTCAVKDPTEKHMRERIKE 63

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
              + K ++  GC+   +    +     I+GV+ IDR+ E +    +G +   V     +
Sbjct: 64  LLDSGKKVIATGCLVHVNPGAIDPRVSGILGVKSIDRIAEAISVAERGGKLISVEGWRER 123

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
            +  L+LP++ +N    ++PI+ GCL ACTYC T+ ARG L SY  E +V  V+  +A G
Sbjct: 124 SIDKLELPRLWKNGVAFVVPISEGCLNACTYCATRFARGVLKSYKPELVVRWVKEALARG 183

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
            KE+ LSSEDTG YG DIG NL  LL+ I A    +G   +R+GM NP   ++ L E+ E
Sbjct: 184 YKEIQLSSEDTGCYGFDIGTNLAKLLDEITA---IEGDFRVRVGMMNPNHAIKFLDELVE 240

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
             R   VY FLH+PVQSG D VL  M R YT+ +F  +V T    +P + + TDII GFP
Sbjct: 241 AYRDEKVYKFLHLPVQSGDDEVLRRMGRTYTVEEFEEIVRTFRRRIPHLNLNTDIIVGFP 300

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
           GET+E F  T  L+K  +  ++++S++ PRPGT AAR K++P   VK+
Sbjct: 301 GETEEAFQNTAELVKRVRPDKINVSRYSPRPGTVAARWKQLPGWKVKE 348


>gi|212224708|ref|YP_002307944.1| 2-methylthioadenine synthetase [Thermococcus onnurineus NA1]
 gi|212009665|gb|ACJ17047.1| Hypothetical 2-methylthioadenine synthetase [Thermococcus
           onnurineus NA1]
          Length = 425

 Score =  267 bits (682), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 139/348 (39%), Positives = 209/348 (60%), Gaps = 6/348 (1%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           ++++T+GC+ N++D+E M   L   GY L +  E AD  ++NTC VK P++  M   I +
Sbjct: 4   VHVETYGCTRNKADAEIMEAILLRAGYELVETPESADYVVVNTCAVKDPTEKHMRERIKE 63

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVV---EETLKGHEVRLLHRK 177
              + K ++V GC+   + D+ +     I+GV+ IDR+ E +   E   K   V     +
Sbjct: 64  LLDSGKRVIVTGCLTHVNPDIIDPRVSGILGVKSIDRIAEAIDLAERDGKLVSVEGWRER 123

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
            L  L LP++ R+    ++PI+ GCL ACTYC T+ ARG L SY  E +V  V+  +A G
Sbjct: 124 SLDKLGLPRLWRSGVAFVVPISEGCLNACTYCATRFARGVLKSYKPELVVKWVKEALARG 183

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
            +E+ LSSEDTG YG DIG NL  LL+ I +    +G   +R+GM NP   ++ L E+ E
Sbjct: 184 YREIQLSSEDTGCYGFDIGTNLAELLDEITS---IEGEFRIRVGMMNPNHAIKFLDELIE 240

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
             +   VY FLH+PVQSG + VL  M R YT+ +F  +V+     +PG+ + TDII GFP
Sbjct: 241 AYQDEKVYKFLHLPVQSGDNEVLRRMGRTYTVEEFEEIVNEFRRKIPGLNLNTDIIVGFP 300

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
           GET+E F  TV L+K  +  ++++S++ PRPGT AA+ K++P   VK+
Sbjct: 301 GETEEAFQNTVELVKRVRPDKINVSRYSPRPGTIAAKWKQLPGWKVKE 348


>gi|329765663|ref|ZP_08257235.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329137855|gb|EGG42119.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 422

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 145/376 (38%), Positives = 229/376 (60%), Gaps = 16/376 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++ +GCS + +DSE ++G +   G+ +  NS E+D+ ++ TC+VK  + + M   I  
Sbjct: 4   IFVEAYGCSASFADSEMISGLIVNGGHTIAKNSTESDLNIVVTCSVKDSTANKMIHRIKS 63

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLLHR 176
            KS  KPLVVAGC+P+   +L  +E +S    ++G   + + ++V++ TL+G +   L  
Sbjct: 64  LKS--KPLVVAGCLPKA--ELSTVEKISKNASLLGPNSLGKTLQVIDSTLRGTKFVALED 119

Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
             L  + LPKVR N+ V I+ I  GC+  C++C+TK A+G L SY +  +V +V T +++
Sbjct: 120 TDLSKVGLPKVRLNEVVGIVEIASGCMSECSFCQTKLAKGDLQSYRIGDIVRQVETEVSE 179

Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
           G KE+WL+S D G YG DI  +LP L+ A V+E+P D   M+R+GM NP ++     E+ 
Sbjct: 180 GCKEIWLTSTDNGCYGFDINTDLPTLVKA-VSEIPED--FMIRVGMMNPMYMPRIKNELI 236

Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           E      VY FLH+PVQSGSD VL+ M R +T++ F+ VV    E      I+TDII GF
Sbjct: 237 ESFSSDKVYKFLHIPVQSGSDKVLNDMRRGHTVNTFKEVVKKARERFADFTISTDIIVGF 296

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR----ELTS 412
           P ET EDF +T  L+ E     V++S++  RPGT AA  +++ ++ VK+RSR    ++  
Sbjct: 297 PSETREDFEKTFELLNETSPDIVNLSKYSARPGTEAAEWEQIEASEVKRRSRIIFNQINK 356

Query: 413 V-FEAFTPYLGMEGRV 427
           +  E    ++G +G+V
Sbjct: 357 ISLENNQKWIGWKGKV 372


>gi|70939009|ref|XP_740104.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56517584|emb|CAH81443.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 284

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 122/242 (50%), Positives = 173/242 (71%), Gaps = 3/242 (1%)

Query: 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPIL 262
           G CTYC TK ARG+L SY ++ +V R++ V   D +KE+WL+SED+GAYG D+  N+  L
Sbjct: 1   GNCTYCNTKFARGNLSSYNIKDIVSRIKHVYTQDNIKEIWLTSEDSGAYGIDLNTNIVNL 60

Query: 263 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA 322
           L  I+ +   D   M+RIGMTNPP+IL+H+K+I ++L+H  +Y F+H+PVQSGS+ VL  
Sbjct: 61  LKEIL-DYVQDTDIMIRIGMTNPPYILKHVKDICKLLKHKNMYEFIHIPVQSGSNNVLKD 119

Query: 323 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382
           MNREY + DF  +VD L + VP M IATDIICGFP E++ D  +TVNL+K YKFP ++IS
Sbjct: 120 MNREYKIEDFIYLVDNLRKYVPNMTIATDIICGFPYESENDHLETVNLVKTYKFPILNIS 179

Query: 383 QFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF-TPYLGMEGRVERIWITEIAADGIH 441
           QFYPR GT A  MKK+ + +VKKRSRE+T  F ++   Y  ++  ++++  TEI++   H
Sbjct: 180 QFYPRRGTVAYNMKKIDTKIVKKRSREVTDAFLSYQNNYEFLQDTIQKVLFTEISSKSEH 239

Query: 442 LV 443
           ++
Sbjct: 240 II 241


>gi|156337861|ref|XP_001619903.1| hypothetical protein NEMVEDRAFT_v1g149881 [Nematostella vectensis]
 gi|156203943|gb|EDO27803.1| predicted protein [Nematostella vectensis]
          Length = 202

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/202 (61%), Positives = 155/202 (76%), Gaps = 2/202 (0%)

Query: 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI 261
           CL  CTYCKTKHARG LGSY  E +V R +    +GV E+WL+SEDTGAYG+DIGV LP 
Sbjct: 1   CLNQCTYCKTKHARGDLGSYPPEEIVNRAKQAFNEGVVEMWLTSEDTGAYGKDIGVTLPE 60

Query: 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
           LL  +V  +P  G   +RIGMTNPP+ILEHL+E+A++L HP VYSFLHVPVQS S  VL+
Sbjct: 61  LLWQLVKVIPEGGR--MRIGMTNPPYILEHLEEMAKILNHPRVYSFLHVPVQSASTNVLA 118

Query: 322 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
            M REY   DF  VV+ L + VP + IATD+ICGFP ET++DF +T++L+K+YKFP + I
Sbjct: 119 DMKREYIAEDFEHVVNYLRQRVPDLTIATDLICGFPTETEDDFQKTLDLVKKYKFPSLFI 178

Query: 382 SQFYPRPGTPAARMKKVPSAVV 403
           +QFYPRPGTPAARMK++P+  V
Sbjct: 179 NQFYPRPGTPAARMKRLPTEEV 200


>gi|340345320|ref|ZP_08668452.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum
           koreensis MY1]
 gi|339520461|gb|EGP94184.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum
           koreensis MY1]
          Length = 422

 Score =  264 bits (674), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 143/374 (38%), Positives = 226/374 (60%), Gaps = 12/374 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++ +GCS + +DSE ++G +   G+ L  +S E+D+ ++ TC+VK  + + M   I  
Sbjct: 4   IFVEAYGCSASFADSEMISGLIVNGGHTLVKDSSESDLNIVVTCSVKDSTANKMMHRINS 63

Query: 121 CKSAKKPLVVAGCVPQGSRDLKE--LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
            KS  KPLVVAGC+P+  ++  E   +  S++G   + + ++V++ TL+G +   L    
Sbjct: 64  LKS--KPLVVAGCLPKAEQNTVEKITQKASLLGPNSLGKTLQVIDSTLRGIKQVALEDSD 121

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
           L  + LPKVR N  + I+ I  GC+  CT+C+TK ++G L SY +  +V +V T I++G 
Sbjct: 122 LSKVGLPKVRLNPVIGIIEIASGCMSECTFCQTKLSKGDLKSYRLGDIVRQVETEISEGC 181

Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           KE+WL+S D G YG DI  +LP L+NA V E+P D   M+R+GM NP ++     E+ + 
Sbjct: 182 KEIWLTSTDNGCYGLDINTDLPTLINA-VTEIPED--FMIRVGMMNPMYMPRIKNELIKS 238

Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
                VY FLH+PVQSGS+ VL+ M R +T++  + VV    E      I+TDII GFP 
Sbjct: 239 FDSDKVYKFLHIPVQSGSNKVLNDMKRGHTVNTVKEVVKKAKERFENFTISTDIIVGFPS 298

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR----ELTSV- 413
           ET+EDF +T  LI E +   V++S++  RPGT AA   ++ ++ VK+RSR    ++  + 
Sbjct: 299 ETNEDFEKTFKLINEIRPDIVNLSKYSARPGTEAAEWDQIEASEVKRRSRIIFNQINKIS 358

Query: 414 FEAFTPYLGMEGRV 427
            E    ++G  G+V
Sbjct: 359 LENNQKWIGWRGKV 372


>gi|386876686|ref|ZP_10118774.1| MiaB-like tRNA modifying enzyme, archaeal-type [Candidatus
           Nitrosopumilus salaria BD31]
 gi|386805442|gb|EIJ64973.1| MiaB-like tRNA modifying enzyme, archaeal-type [Candidatus
           Nitrosopumilus salaria BD31]
          Length = 422

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 141/374 (37%), Positives = 229/374 (61%), Gaps = 12/374 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++ +GCS + +DSE ++G +   G++L DNS ++D+ ++ TC+VK  + + M   I  
Sbjct: 4   IFVEAYGCSASFADSEMISGLIQNGGHSLVDNSSDSDLNIVVTCSVKDSTANKMMHRIKS 63

Query: 121 CKSAKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
            KS  KPL+VAGC+P+  +D  E   +  S++G   + + ++V+  TL G     L    
Sbjct: 64  LKS--KPLIVAGCLPKAEKDTVEKFSKKASLLGPNSLGKTLQVINTTLDGRRQIALEDSD 121

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
           L  + LPKVR N  V I+ I  GC+  CT+C+TK ++G L SY +  +V +++T I +G 
Sbjct: 122 LSKVGLPKVRLNPAVGIVEIASGCMSECTFCQTKLSKGDLSSYRLGDIVRQIQTEIKEGC 181

Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           KE+WL+S D G YG DIG +LP L+NA+V E+P +   M+R+GM NP ++    + + E 
Sbjct: 182 KEIWLTSTDNGCYGFDIGTDLPSLVNAVV-EIPEN--FMVRVGMMNPMYMPRIKERLIES 238

Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
             +  V+ FLH+PVQ GS+ VL  M R +T   FR +V    +      I+TDII GFP 
Sbjct: 239 FDNDKVFKFLHIPVQCGSNKVLHDMKRGHTEGTFREIVKKARDRFEQFTISTDIIVGFPS 298

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR----ELTSV- 413
           ET+EDF +T+ L+ E K   V++S++  RPGT AA  K++ +  +K+RS+    +++ + 
Sbjct: 299 ETEEDFQKTIALLDETKPDVVNLSKYSARPGTDAAEWKQLDATEIKRRSKVIFEQISKLS 358

Query: 414 FEAFTPYLGMEGRV 427
            E+   ++G +G+V
Sbjct: 359 IESNKKWIGWKGKV 372


>gi|392354304|ref|XP_003751735.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
           [Rattus norvegicus]
          Length = 423

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/213 (58%), Positives = 167/213 (78%), Gaps = 2/213 (0%)

Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
           +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+ILEHL+E+
Sbjct: 61  EGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEM 118

Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
           A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ IATDIICG
Sbjct: 119 AKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDIICG 178

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
           FPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V K+R+++L+ VF 
Sbjct: 179 FPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHVKKQRTKDLSRVFH 238

Query: 416 AFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           ++ PY    G  +++ +TE + D    V   +F
Sbjct: 239 SYNPYDHKIGERQQVLVTEESFDSKFYVAHNRF 271


>gi|389851459|ref|YP_006353693.1| methylthiotransferase [Pyrococcus sp. ST04]
 gi|388248765|gb|AFK21618.1| putative methylthiotransferase [Pyrococcus sp. ST04]
          Length = 405

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 138/353 (39%), Positives = 211/353 (59%), Gaps = 11/353 (3%)

Query: 78  MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137
           MA  L   G+ L  +  +A++ ++N+C VK P++  +   I +     K ++V GC+P  
Sbjct: 1   MAALLYLAGHELVSDENDAEVVVVNSCAVKDPTERKIARRIKELLDEGKKVIVTGCLPHV 60

Query: 138 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRKKLPALDLPKVRRNKFVE 194
           + D+ +    +I+GV+ IDR+V+ VE  L+G +   V    ++ L  LDLP++       
Sbjct: 61  NPDVIDERVSAILGVKSIDRIVQAVEYALRGEKLISVPDWKKRNLDKLDLPRLSPRGVHF 120

Query: 195 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 254
           I+PI  GCL ACTYC T+ ARG L SY+ E +V  V+  I  G KE+WLS+EDTG YG D
Sbjct: 121 IVPIAEGCLNACTYCATRLARGVLKSYSPEKVVEWVKWAIRQGYKEIWLSAEDTGCYGFD 180

Query: 255 IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQS 314
           IG NL  LL+ I +    +G   +R+GM NP  +++ L E+ E  +   +Y FLH+PVQS
Sbjct: 181 IGTNLAKLLDEITS---IEGEFRVRVGMMNPNHVMKFLDELIEAYKDEKIYKFLHLPVQS 237

Query: 315 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374
           G + +L  M R YT+ +F  +V+      P + + TDII GFPGE++E F ++V LIK  
Sbjct: 238 GDNEILRKMGRTYTVEEFEEIVNAFRREFPDLNLHTDIIVGFPGESEEAFQKSVELIKRI 297

Query: 375 KFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR-----ELTSVFEAFTPYLG 422
           +  +V++S++ PRPGT AA+ K++P  +VK+RSR      L   +E    Y+G
Sbjct: 298 RPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRIMHRIRLQISYEINQRYIG 350


>gi|288931237|ref|YP_003435297.1| MiaB-like tRNA modifying enzyme [Ferroglobus placidus DSM 10642]
 gi|288893485|gb|ADC65022.1| MiaB-like tRNA modifying enzyme [Ferroglobus placidus DSM 10642]
          Length = 422

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 143/393 (36%), Positives = 233/393 (59%), Gaps = 10/393 (2%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++T+GC+ NQ+DS+ M G LS   YA  D++EEAD+ ++NTC V   ++  +   I +
Sbjct: 3   VYIETYGCTMNQADSDIMRGLLSR-EYAFADSAEEADVVIVNTCGVIGFTERKILRRIEE 61

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            K   K ++ AGC+ + +R   ++   ++V    + R+ E V+  L G  V +++  ++ 
Sbjct: 62  IKGMGKKVIAAGCLARIARKRLKIAD-ALVSPDNVHRINEAVKAVLNGERVEIINVSRVD 120

Query: 181 ALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
             ++  V+   +   + I+ I+ GCLG C+YC TK ARG L S+++E +V  V+ V+  G
Sbjct: 121 KAEISGVKCRLKENAIAIVSISEGCLGNCSYCATKIARGRLRSFSIEKIVEEVKKVVEMG 180

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
            KE+ L+S+DTGAYG+D G  LP LL  I +E+  +G   +R+GM NP   +E L ++ E
Sbjct: 181 YKEIQLTSQDTGAYGKDKGYRLPDLLEKI-SEI--EGDFRVRVGMMNPQHAMEILDDLIE 237

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
             +   +Y FLH+PVQSG + VL  M R +T+ DF  VV    +    + ++TD+I GFP
Sbjct: 238 AFKSEKIYKFLHLPVQSGDNKVLMDMRRGHTVEDFEEVVSAFRKAFDDVLLSTDVIVGFP 297

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE-- 415
            E++E F +TV LIK  K   V+I++F PR GT AA++K +P  + K+RSR+LT + E  
Sbjct: 298 TESEESFEKTVELIKRVKPDIVNITRFSPREGTLAAKLKDIPDWIKKERSRKLTKICEEI 357

Query: 416 AFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
                L   G+  R+ +T+   +   L R + +
Sbjct: 358 GLENNLKFVGKKLRVLVTKRGKNETLLARADSY 390


>gi|242399008|ref|YP_002994432.1| 2-methylthioadenine synthetase [Thermococcus sibiricus MM 739]
 gi|242265401|gb|ACS90083.1| Probable 2-methylthioadenine synthetase [Thermococcus sibiricus MM
           739]
          Length = 424

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 144/376 (38%), Positives = 220/376 (58%), Gaps = 13/376 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           ++++T+GC+ N++D+E M   L   GY + D  + AD  ++NTC VK P++  M   I +
Sbjct: 3   VHIETYGCTRNKADAEMMEALLLRAGYEVVD-LDSADYVIMNTCAVKDPTEKHMARRIKE 61

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
              + K ++V GC+P  +    +     I+GV+ IDR++  +E   +G +   V     +
Sbjct: 62  LLDSGKRVIVTGCLPHVNPSAIDERVSGILGVKSIDRIIGAIELAERGEKLINVEGWRER 121

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
            +  L++P+V +   V ++PI+ GCL ACTYC T+ ARG L SY    +V  V+  +A G
Sbjct: 122 SIDKLEIPRVWKGGVVFVVPISEGCLNACTYCATRFARGVLKSYKPGLIVKWVKEAVAKG 181

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
            KE+ LSSEDTG YG DIG NL  LL+ I +    +G   +R+GM NP   ++ L E+ E
Sbjct: 182 YKEIQLSSEDTGCYGFDIGTNLARLLDEITS---IEGEFRIRVGMMNPNNAVKVLDELIE 238

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
             +   +Y FLH+PVQSG + +L  M R YT+ +F  +V    + +  + + TDII GFP
Sbjct: 239 AYKDNKIYKFLHLPVQSGDNEILKRMGRPYTVEEFEEIVREFRKHIKDLNLNTDIIVGFP 298

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR-----ELT 411
           GE++E F  TV LIK  +  ++++S+F PRPGT AARMK ++    VK+RSR      L+
Sbjct: 299 GESEEAFQNTVELIKRVRPDKINVSRFSPRPGTVAARMKDQIVGWRVKERSRYLHRLRLS 358

Query: 412 SVFEAFTPYLGMEGRV 427
             +E    YLG E  V
Sbjct: 359 ISYEINRRYLGREMEV 374


>gi|15920732|ref|NP_376401.1| hypothetical protein ST0515 [Sulfolobus tokodaii str. 7]
 gi|15621515|dbj|BAB65510.1| tRNA methylthiotransferase [Sulfolobus tokodaii str. 7]
          Length = 418

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 214/369 (57%), Gaps = 16/369 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++T+GC+ N+ DS  M   L   G+ + D+  +AD+ ++NTC V+  ++  M   I +
Sbjct: 3   VYIETYGCALNKGDSYIMMTLLKDRGHDIVDSYNQADVIVLNTCAVRLETEERMKQRIKE 62

Query: 121 CKSAKKPLVVAGCV--PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
            K   K L++AGC+   Q +  +      SIVG Q ID++VE VE   +G  + L   K+
Sbjct: 63  LKKIGKKLIIAGCLVSSQPALVMSLAPESSIVGAQSIDKIVEAVESNKRG--IFLEESKE 120

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
           L     P++   K + I+PI  GC G C +C TK AR  L SY   ++V  V+  +  G 
Sbjct: 121 LVT---PRIFEGK-ISIIPIADGCAGDCNFCITKLARKKLRSYPPRNIVNAVKEAVQKGA 176

Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
            E+ L+++DT AYG DI  NL  LL  I   L  +G+ M+RIGM  P    + + EI E+
Sbjct: 177 VEIELTAQDTAAYGLDINYNLVELLKEI---LEIEGNYMIRIGMMTPELAFKQIDEILEI 233

Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
           ++   VY FLH+PVQSG D VL  MNR+YT+ ++R +V  + + +P + I TDII G PG
Sbjct: 234 IKDKRVYKFLHLPVQSGDDRVLKLMNRKYTVDEYRELVKEIRDKIPIVNITTDIIIGHPG 293

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE--- 415
           E DE F  T+NLIKE KF ++H++ +  RP T +A M +VP ++ K+R +    V+E   
Sbjct: 294 EDDEAFQNTINLIKEIKFERIHLAMYSIRPNTRSASMPQVPDSIKKERMKIANEVYEEVA 353

Query: 416 --AFTPYLG 422
               + YLG
Sbjct: 354 YSVHSEYLG 362


>gi|408383124|ref|ZP_11180663.1| MiaB family RNA modification protein [Methanobacterium formicicum
           DSM 3637]
 gi|407814232|gb|EKF84864.1| MiaB family RNA modification protein [Methanobacterium formicicum
           DSM 3637]
          Length = 424

 Score =  258 bits (659), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 146/396 (36%), Positives = 230/396 (58%), Gaps = 13/396 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IYM+TFGC+ NQ+DS+ +AG L   G  +  + EEAD+ ++NTC VK P++  +   I K
Sbjct: 3   IYMETFGCTFNQADSQIIAGLLEENGGKIVKSPEEADVIIMNTCYVKQPTEQKITNRIGK 62

Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLL 174
            ++   +K L++AGC+     D ++LE ++     +G ++I+   EVVE  +KGH VR  
Sbjct: 63  LQAQFPQKKLLIAGCMV--DIDPEKLEKMAPQAGWIGARRINSAPEVVEAVMKGHLVRET 120

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
                    LP+ R N +V IL I  GCLG C+YC T+ ARG L SY +  L       +
Sbjct: 121 GHGDEFKTCLPRKRSNPWVHILQICEGCLGKCSYCCTRFARGGLQSYPISLLKSEAEQAV 180

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
           ADG  E+ L+++DT AYG+D G  L  L+N I +     G   +R+GM +P  I   L+ 
Sbjct: 181 ADGCVEIQLTAQDTAAYGKDSGETLADLINEISS---IKGDFRIRVGMMHPKNIANDLES 237

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           I    ++  VY FLH+P+QSGSD +L  MNR++++ ++  +V      +P + +ATDII 
Sbjct: 238 IITAFKNDKVYKFLHLPLQSGSDQILEDMNRDHSVEEYLEIVKHFQTEIPELSLATDIIV 297

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-- 412
           G+P E ++DF  T+N+I+E +   +HIS+++ RPGT ++ + ++    +KKRSR L    
Sbjct: 298 GYPTEGEDDFEGTMNVIREIRPDFLHISKYHHRPGTSSSLLPEIDHQTMKKRSRNLNDLK 357

Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           V  A      + G  ++I IT+  + G +L R   +
Sbjct: 358 VEIATVNNKKLLGTHQKILITDKGSKGGYLGRTSSY 393


>gi|167042354|gb|ABZ07082.1| putative Radical SAM superfamily protein [uncultured marine
           crenarchaeote HF4000_ANIW97M7]
          Length = 422

 Score =  257 bits (657), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 144/374 (38%), Positives = 224/374 (59%), Gaps = 12/374 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++ +GCS + +DSE ++G +   G+ L  +  E+D+ LI TC+VK  + + M   I +
Sbjct: 4   IWVEAYGCSSSFADSEMISGLIVNGGHTLVQDQSESDLNLIVTCSVKDVTATRMVHRIKQ 63

Query: 121 CKSAKKPLVVAGCVPQGSRDLKE--LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
            +S  KPLVVAGC+P+  R   E   +  S++G   I + ++V+E TL G +V  L    
Sbjct: 64  SQS--KPLVVAGCLPKAERHTVEKFAQNASMMGPNSIGKTLQVIEATLNGSKVVALDDTD 121

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
           L  + +PK+R N  V I+ I  GC+  CT+C+TK A+G L SY +  +V +V+  +ADG 
Sbjct: 122 LSKVGIPKIRLNPAVGIVEIANGCMSECTFCQTKLAKGDLNSYRIGDIVRQVKRELADGC 181

Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           KE+WLSS D G YG DIG +L  L+   V+++P D    +R+GM NP F+      + + 
Sbjct: 182 KEIWLSSTDNGCYGLDIGEDLSSLIEQ-VSQIPEDFK--IRVGMMNPMFMPRIRDNLLKS 238

Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
             +  V+ FLHVPVQSGS+ VL+ M R +T+  F+ VV           I+TDII G+P 
Sbjct: 239 FENNKVFRFLHVPVQSGSNDVLNNMKRGHTVETFKDVVRKFRTKFGPFTISTDIIIGYPT 298

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV----- 413
           ET E+F +T+ L+KE +   V++S++  RPGT AA M ++  A VK+RS+++T +     
Sbjct: 299 ETQENFEETIALLKETRPDIVNLSRYSQRPGTVAAEMPQIDVAEVKRRSKQVTELNNNIS 358

Query: 414 FEAFTPYLGMEGRV 427
            E    ++G +G V
Sbjct: 359 LENNRKWIGWKGNV 372


>gi|312136430|ref|YP_004003767.1| RNA modification enzyme, miab family [Methanothermus fervidus DSM
           2088]
 gi|311224149|gb|ADP77005.1| RNA modification enzyme, MiaB family [Methanothermus fervidus DSM
           2088]
          Length = 427

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 133/352 (37%), Positives = 217/352 (61%), Gaps = 7/352 (1%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++T+GC++N++DS+ +AG L      + D+ +EAD+ ++NTC VK P++  +   I +
Sbjct: 3   VYIETYGCTYNKADSQIIAGILEKENIKVVDSIDEADVIILNTCYVKQPTEHKIINRIRE 62

Query: 121 CKSA--KKPLVVAGCVPQ-GSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHR 176
            ++    K L+VAGC+ +     LK++   S  +G  ++ +  EVV+  + G++ ++  +
Sbjct: 63  LQNTYKSKELIVAGCMVEIDPEKLKKIAPESAWLGPHKLHKAPEVVKSVINGNKKKVYGK 122

Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
                +++PK R N  + I+ I  GCLG C+YC T+ ARG L SY ++S+V  V+  I D
Sbjct: 123 DSKIKVEMPKKRFNSHIHIVQICEGCLGNCSYCCTRFARGRLYSYPLDSIVKDVKKAIED 182

Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
           G  E+ L+++DT AYGRDIG +LP L+N I +    DG   +R+GM +P  + + L E+ 
Sbjct: 183 GCVEIQLTAQDTAAYGRDIGCDLPTLINKITS---LDGKFKIRVGMMHPKNVKKILDELV 239

Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           +      +Y FLH+PVQSGSD VL  MNR Y + DF+ +V    + +P + IATDII GF
Sbjct: 240 DAYDSEKIYKFLHLPVQSGSDKVLRDMNRGYKVKDFKKIVRKFRKKIPEISIATDIIVGF 299

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
           P E+ EDF +T  L+ E K   +H S++  RPG  ++++ ++    VK+RSR
Sbjct: 300 PTESREDFKKTCELLNEIKPNFIHSSRYAHRPGAKSSKLDELDHNEVKERSR 351


>gi|170289680|ref|YP_001736496.1| 2-methylthioadenine synthetase [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170173760|gb|ACB06813.1| 2-methylthioadenine synthetase [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 432

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 149/375 (39%), Positives = 218/375 (58%), Gaps = 22/375 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GCS N+SDS+ M   L   G    ++  EAD+ ++NTC VK+P++  M   I +
Sbjct: 3   FYIETYGCSMNRSDSQIMEKLLEEAGLIRVNDPREADVIVLNTCNVKTPTEQRM---IQR 59

Query: 121 CKSAKK--PLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
            +   K  PLVVAGC+   QG + LK+   V +V  ++ID++VE V   + G     L  
Sbjct: 60  ARELSKYAPLVVAGCMAKSQGYK-LKDFSKV-LVAPREIDKIVEAVNSAIAGRRAEFLEW 117

Query: 177 KKLPALDLPKVRRN--KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
           +    +D     R+  + V I+PI  GC+GACTYC T+ ARG L S+   +++      +
Sbjct: 118 R---FIDKSSYLRDPLELVGIIPIAEGCMGACTYCITRLARGGLTSFPKRNILRLAEHFL 174

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
             G  E+WL+SEDT AYGRD+G NL  L+  + ++LP  G   +R+GM  P   L  L E
Sbjct: 175 RKGAVELWLTSEDTAAYGRDMGENLANLIMDL-SDLP--GDFRIRVGMMTPSSALPILSE 231

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           +    R   VY F H+PVQSGSD VL  M R YT+  F ++VD + + +  + IATDII 
Sbjct: 232 LIGAYRSRKVYKFFHLPVQSGSDRVLEDMGRNYTVDQFLSMVDFIRKELSDVSIATDIIV 291

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           GFP E +EDF  T+ +++  K   V++S+F  RPGT AA M+K+P A+V +RS+E+  + 
Sbjct: 292 GFPTEDEEDFESTLAILERLKPDVVNVSKFGARPGTKAASMRKLPDAIVSRRSKEVNELV 351

Query: 415 EAFTP-----YLGME 424
           E         YLG E
Sbjct: 352 ERIKEEVNERYLGRE 366


>gi|148642905|ref|YP_001273418.1| 2-methylthioadenine synthetase, MiaB [Methanobrevibacter smithii
           ATCC 35061]
 gi|222445138|ref|ZP_03607653.1| hypothetical protein METSMIALI_00759 [Methanobrevibacter smithii
           DSM 2375]
 gi|148551922|gb|ABQ87050.1| 2-methylthioadenine synthetase, MiaB [Methanobrevibacter smithii
           ATCC 35061]
 gi|222434703|gb|EEE41868.1| MiaB-like tRNA modifying enzyme, archaeal-type [Methanobrevibacter
           smithii DSM 2375]
          Length = 426

 Score =  253 bits (647), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 140/396 (35%), Positives = 230/396 (58%), Gaps = 13/396 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y+ T+GC+ N++D++ M G L      L D+ E AD+ ++NTC VK P+++ +   I +
Sbjct: 3   VYIDTYGCTFNKADAQIMGGVLKENHIDLVDSPELADVIIVNTCYVKLPTENKVVYKIQQ 62

Query: 121 C--KSAKKPLVVAGCVPQGSRDLKELEGV----SIVGVQQIDRVVEVVEETLKGHEVRLL 174
              K   K ++V+GC+ +   D ++LE V    S +G  Q+++  +VV  T  G  +R  
Sbjct: 63  LQEKFPDKKVIVSGCMVE--IDPEKLEKVAPDCSWIGPHQLNKTADVVNGTYCGRVIREC 120

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
              K   + +PKV     + I+ I  GCLGACT+C T+ ARG L SY ++ +V   +  I
Sbjct: 121 GFSKDSKVGVPKVSDGSLIHIIQIAEGCLGACTFCCTRFARGPLNSYPIKDIVAEAKKAI 180

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
            DG  E+ L+++DT A+G D G  L  L+   VA L  DG   +R+GM +P  IL ++ E
Sbjct: 181 DDGAVEIQLTAQDTAAFGYDSGEKLSDLIKE-VANL--DGEFRVRVGMMHPKNILNNVDE 237

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           I + ++HP VY+F+H+PVQ+GS+ VLS M R +TL  +  +V      +P + +A DII 
Sbjct: 238 IIDAIKHPKVYNFIHLPVQTGSNKVLSEMRRGHTLDQYLDIVSKFKSEIPDLTLAVDIIV 297

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           G+P E+DEDF  TV+L++  K   +H+S++  R G  ++ +K++P  V+KKRSR L+ + 
Sbjct: 298 GYPTESDEDFQLTVDLLRNIKPSLIHLSKYQHRKGAVSSSLKEIPHEVMKKRSRNLSRIK 357

Query: 415 EAFTPYLGME--GRVERIWITEIAADGIHLVRLEQF 448
              T     E  G V+   + E+ + G  + + + +
Sbjct: 358 TEITEEENKELVGSVQNAVVVEVGSKGGFIAKTDSY 393


>gi|41614804|ref|NP_963302.1| hypothetical protein NEQ008 [Nanoarchaeum equitans Kin4-M]
 gi|40068528|gb|AAR38863.1| NEQ008 [Nanoarchaeum equitans Kin4-M]
          Length = 413

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 213/379 (56%), Gaps = 26/379 (6%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y +++GC+ N+ D+ YM  Q+       T+N EEAD+ +IN+C VK P+++ +   I +
Sbjct: 3   VYFESYGCTLNKRDTLYMQAQIEN----TTNNLEEADVVVINSCIVKQPTETKILYRINQ 58

Query: 121 CKSAKKPLVVAGC-VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
            K   K +V+ GC V +     KEL+ +S+V +   DR+ E +E T KG  V  L +KK+
Sbjct: 59  LKKMGKKIVLTGCMVSEPYLKYKELQDISLVNIYNQDRIKEAIERTYKGERVLFLEKKKI 118

Query: 180 P---ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
               A  L K R      I+ I  GCL  CTYC TK AR    SY  + +   +   +  
Sbjct: 119 YKEFARPLSKAR-----AIIQIQEGCLWRCTYCGTKLARSMFYSYPPKLIKREIEEKLKQ 173

Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
           G+K  +L+  DT  YG+DI  +L  LL  ++     +G   +R+GM NP F LE + E+ 
Sbjct: 174 GIKIFYLTGPDTATYGKDINYSLADLLKDLI---EIEGDFYIRVGMANPTFFLEQIDELI 230

Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           +V +   ++ F H+PVQSGS+ VL  MNR YT+ +++ ++  L +  P     TDII G+
Sbjct: 231 DVFKSNKIFKFFHLPVQSGSNKVLKDMNRPYTIEEYKELIYKLRKHFPLATYVTDIIVGY 290

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 416
           P ET+EDF QT+ L++E KF  ++IS+F+ RPGT A  +K++   +V  R + L  VF  
Sbjct: 291 PTETEEDFEQTLELVREIKFDGINISRFWRRPGTIAWNLKQLDPEIVTNRVKRLKEVF-- 348

Query: 417 FTPYLGMEGRVER--IWIT 433
                 ++G  ER  +W+ 
Sbjct: 349 ------LQGAYERNKLWLN 361


>gi|261350294|ref|ZP_05975711.1| putative 2-methylthioadenine synthetase [Methanobrevibacter smithii
           DSM 2374]
 gi|288861078|gb|EFC93376.1| putative 2-methylthioadenine synthetase [Methanobrevibacter smithii
           DSM 2374]
          Length = 426

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 140/396 (35%), Positives = 230/396 (58%), Gaps = 13/396 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y+ T+GC+ N++D++ M G L      L D+ E AD+ ++NTC VK P+++ +   I +
Sbjct: 3   VYIDTYGCTFNKADAQIMGGVLKENHIDLVDSPELADVIIVNTCYVKLPTENKVVYKIQQ 62

Query: 121 C--KSAKKPLVVAGCVPQGSRDLKELEGV----SIVGVQQIDRVVEVVEETLKGHEVRLL 174
              K   K ++V+GC+ +   D ++LE V    S +G  Q+++  +VV  T  G  +R  
Sbjct: 63  LQEKFPDKKVIVSGCMVE--IDPEKLEKVAPDCSWIGPHQLNKTADVVNGTYCGRVIREC 120

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
              K   + +PKV     + I+ I  GCLGACT+C T+ ARG L SY ++ +V   +  I
Sbjct: 121 GFSKDSKVGVPKVSDGSLIHIIQIAEGCLGACTFCCTRFARGPLNSYPIKDIVAEAKKAI 180

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
            DG  E+ L+++DT A+G D G  L  L+   VA L  DG   +R+GM +P  IL ++ E
Sbjct: 181 DDGAVEIQLTAQDTAAFGYDSGEKLSDLIKE-VANL--DGEFRVRVGMMHPKDILNNVDE 237

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           I + ++HP VY+F+H+PVQ+GS+ VLS M R +TL  +  +V      +P + +A DII 
Sbjct: 238 IIDAIKHPKVYNFIHLPVQTGSNKVLSEMRRGHTLDQYLDIVSKFKSEIPDLTLAVDIIV 297

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           G+P E+DEDF  TV+L++  K   +H+S++  R G  ++ +K++P  V+KKRSR L+ + 
Sbjct: 298 GYPTESDEDFQLTVDLLRNIKPSLIHLSKYQHRKGAVSSSLKEIPHEVMKKRSRNLSRIK 357

Query: 415 EAFTPYLGME--GRVERIWITEIAADGIHLVRLEQF 448
              T     E  G V+   + E+ + G  + + + +
Sbjct: 358 TEITEEENKELVGSVQNAVVVEVGSKGGFIAKTDSY 393


>gi|333986908|ref|YP_004519515.1| MiaB family RNA modification protein [Methanobacterium sp. SWAN-1]
 gi|333825052|gb|AEG17714.1| RNA modification enzyme, MiaB family [Methanobacterium sp. SWAN-1]
          Length = 425

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 138/397 (34%), Positives = 226/397 (56%), Gaps = 13/397 (3%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
            IY++TFGC+ NQ+DS+ MAG L      +    E+AD+ +INTC VK P++      I 
Sbjct: 2   NIYIETFGCTFNQADSQIMAGLLKENQEKIVSKPEDADVIIINTCYVKHPTEQKAINRIH 61

Query: 120 KCKSA--KKPLVVAGCVPQGSRDLKELE----GVSIVGVQQIDRVVEVVEETLKGHEVRL 173
           K +     K L+++GC+ +   D K+L+      S +G  ++    E+V+    G  VR 
Sbjct: 62  KVQKQFPDKKLIISGCMVE--IDKKKLQKAAPNASWIGPHKVTSTPEIVKSVFNGENVRS 119

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
           +       + LPK+R N F+ I+ I  GC G C+YC T+ ARG L SY  E +   V   
Sbjct: 120 IGYGTDCKVCLPKIRSNPFIHIVQICEGCNGDCSYCCTRFARGSLQSYPTELIKREVEEA 179

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
           +A+G  E+ ++++DT AYG+D G +L  L+N I      +G   +R+GM +P  I++ + 
Sbjct: 180 VAEGCVEIQITAQDTAAYGKDTGTSLSKLINEITT---IEGDFKIRVGMMHPKSIMDDVD 236

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
            I +  ++  VY FLH+P+QSG+D VL  MNR +T++DF+ VV    E +P M I+TD+I
Sbjct: 237 GIIKAFKNEKVYKFLHIPIQSGNDDVLRDMNRGHTVADFKDVVSKFKENIPEMSISTDVI 296

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
            G+P E ++ F  T+NL+ + +   ++IS++  RPGT ++ M+++    +KKRS+ L  +
Sbjct: 297 VGYPTEDEDAFKDTLNLVADIRPDFINISKYGHRPGTRSSLMEEISHESMKKRSKSLNDL 356

Query: 414 FEA--FTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
             A  +   L M G  + + IT   + G ++ R   +
Sbjct: 357 KTAISYENNLKMLGSTQNVVITGKGSKGGYISRANSY 393


>gi|410720277|ref|ZP_11359634.1| MiaB-like tRNA modifying enzyme [Methanobacterium sp. Maddingley
           MBC34]
 gi|410601324|gb|EKQ55841.1| MiaB-like tRNA modifying enzyme [Methanobacterium sp. Maddingley
           MBC34]
          Length = 425

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 144/396 (36%), Positives = 229/396 (57%), Gaps = 13/396 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IYM+TFGC+ NQ+DS+ MAG L   G  +  + E+AD+ +INTC VK P++  +   I K
Sbjct: 3   IYMETFGCTFNQADSQIMAGLLEETGGKIVKSPEDADVIIINTCYVKQPTEQKITNRIGK 62

Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLL 174
            ++   +K L++AGC+     D ++LE ++     +G ++I+   EVVE  + GH  R  
Sbjct: 63  LQAQFPQKKLIIAGCMV--DIDSEKLEKMAPQAGWIGARRINSAPEVVEAVMNGHLARET 120

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
                    LP+ R N  V IL I  GCLG C+YC T+ ARG L SY    L       +
Sbjct: 121 GHGDDIKTCLPRKRSNPMVHILQICEGCLGKCSYCCTRFARGGLQSYPTSLLKAEAEQAV 180

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
           ADG  E+ L+++DT AYG+D G +L  L+N I +    +G   +RIGM +P  I   L+ 
Sbjct: 181 ADGCVEIQLTAQDTAAYGKDTGESLADLINEICS---IEGDFRIRIGMMHPKNIKGDLEA 237

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           I    ++  VY FLH+P+QSGS+ +LS MNR +++ ++  +V+     +P + +ATDII 
Sbjct: 238 IITSFKNEKVYKFLHLPLQSGSNQILSDMNRGHSVEEYLEIVNHFQIEIPELSLATDIIL 297

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-- 412
           G+P E + DF  T+ +I+E +   +HIS+++ RPGT ++ + ++   ++K+RSR+L    
Sbjct: 298 GYPTENENDFQGTMEVIREIRPDFLHISKYHHRPGTRSSLLPEIDHQIMKRRSRKLNDLK 357

Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           V  A      + G  ++I IT+  + G +L R   +
Sbjct: 358 VNIATGNNQKLLGTHQKILITDKGSKGGYLGRSNSY 393


>gi|227826584|ref|YP_002828363.1| MiaB family RNA modification protein [Sulfolobus islandicus
           M.14.25]
 gi|227829226|ref|YP_002831005.1| MiaB family RNA modification protein [Sulfolobus islandicus
           L.S.2.15]
 gi|229577995|ref|YP_002836393.1| MiaB family RNA modification protein [Sulfolobus islandicus
           Y.G.57.14]
 gi|229583207|ref|YP_002841606.1| MiaB family RNA modification protein [Sulfolobus islandicus
           Y.N.15.51]
 gi|229583748|ref|YP_002842249.1| MiaB family RNA modification protein [Sulfolobus islandicus
           M.16.27]
 gi|238618670|ref|YP_002913495.1| MiaB family RNA modification protein [Sulfolobus islandicus M.16.4]
 gi|284996581|ref|YP_003418348.1| MiaB family RNA modification protein [Sulfolobus islandicus
           L.D.8.5]
 gi|227455673|gb|ACP34360.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           L.S.2.15]
 gi|227458379|gb|ACP37065.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           M.14.25]
 gi|228008709|gb|ACP44471.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           Y.G.57.14]
 gi|228013923|gb|ACP49684.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           Y.N.15.51]
 gi|228018797|gb|ACP54204.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           M.16.27]
 gi|238379739|gb|ACR40827.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus M.16.4]
 gi|284444476|gb|ADB85978.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           L.D.8.5]
          Length = 421

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 139/394 (35%), Positives = 225/394 (57%), Gaps = 11/394 (2%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +TIY++T+GC+ N++D+  M   L + GY   +N E ADI ++NTC V+  ++  M   I
Sbjct: 2   KTIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERMKQRI 61

Query: 119 AKCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
            +  +  K LVVAGC+     +  L      S++G Q ++R+++V++      E R +  
Sbjct: 62  KELNTLSKKLVVAGCMSSAEPATVLSIAPNASLIGPQSVERIIDVIK-----SEERKIVL 116

Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
           +   AL  P+    K + I+P+  GC G C++C TK AR  L SY +  +V   R  +  
Sbjct: 117 EGDRALITPRTFDGK-IAIIPVADGCAGNCSFCITKLARRKLRSYPLREIVNAARDAVKA 175

Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
           G KE+ L+ +DT AYG D+G ++  L++ +      DG  M+RIGM  P   +  +  + 
Sbjct: 176 GAKEIELTGQDTAAYGLDLGGSIS-LVDVVNKVTEIDGDFMIRIGMMTPEQAMRIIDNLI 234

Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           EV+R+P VY F+H+PVQSG D VL  MNR+YT+ +++ +V  +   +P   I TDII G 
Sbjct: 235 EVMRNPKVYKFIHLPVQSGDDRVLKLMNRKYTIDEYKELVSEIRSKIPFANITTDIIIGH 294

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE- 415
           PGE ++ FN T+ L+KE +F ++H++ +  RP T +A M +VP +V KKR +    ++E 
Sbjct: 295 PGEDEDAFNNTLLLMKELRFERIHLAMYSIRPNTRSASMPQVPDSVKKKRIQIANKLYED 354

Query: 416 -AFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
            A + +L   G   R+  TE+   G  + RL  +
Sbjct: 355 IALSIHLEYVGSTSRVITTELGRKGSVVGRLMNY 388


>gi|385772200|ref|YP_005644766.1| MiaB family RNA modification protein [Sulfolobus islandicus
           HVE10/4]
 gi|385774915|ref|YP_005647483.1| MiaB family RNA modification protein [Sulfolobus islandicus REY15A]
 gi|323473663|gb|ADX84269.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus REY15A]
 gi|323476314|gb|ADX81552.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
           HVE10/4]
          Length = 421

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 139/394 (35%), Positives = 225/394 (57%), Gaps = 11/394 (2%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +TIY++T+GC+ N++D+  M   L + GY   +N E ADI ++NTC V+  ++  M   I
Sbjct: 2   KTIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERMKQRI 61

Query: 119 AKCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
            +  +  K LVVAGC+     +  L      S++G Q ++R+++V++      E R +  
Sbjct: 62  KELNTLSKKLVVAGCMSSAEPATVLSIAPNASLIGPQSVERIIDVIK-----SEERKIVL 116

Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
           +   AL  P+    K + I+P+  GC G C++C TK AR  L SY +  +V   R  +  
Sbjct: 117 EGDRALITPRTFDGK-IAIIPVADGCAGNCSFCITKLARRKLRSYPLREIVNAARDAVKA 175

Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
           G KE+ L+ +DT AYG D+G ++  L++ +      DG  M+RIGM  P   +  +  + 
Sbjct: 176 GAKEIELTGQDTAAYGLDLGGSIS-LVDVVNKVTEIDGDFMIRIGMMTPEQAMRIIDNLI 234

Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           EV+R+P VY F+H+PVQSG D VL  MNR+YT+ +++ +V  +   +P   I TDII G 
Sbjct: 235 EVMRNPKVYKFIHLPVQSGDDRVLKLMNRKYTIDEYKELVSEIRSKIPFANITTDIIIGH 294

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE- 415
           PGE ++ FN T+ L+KE +F ++H++ +  RP T +A M +VP +V KKR +    ++E 
Sbjct: 295 PGEDEDAFNNTLLLMKELRFERIHLAMYSIRPNTRSASMPQVPDSVKKKRIQIANKLYED 354

Query: 416 -AFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
            A + +L   G   R+  TE+   G  + RL  +
Sbjct: 355 IALSIHLEYVGSTSRVITTELGRKGSVVGRLMNY 388


>gi|288560943|ref|YP_003424429.1| MiaB-like tRNA modifying enzyme [Methanobrevibacter ruminantium M1]
 gi|288543653|gb|ADC47537.1| MiaB-like tRNA modifying enzyme [Methanobrevibacter ruminantium M1]
          Length = 428

 Score =  251 bits (642), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 134/359 (37%), Positives = 217/359 (60%), Gaps = 11/359 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           ++++T+GC+ NQ+DSE MAG L+     L    EEAD  ++NTC VK P++S +   I  
Sbjct: 6   VFIETYGCTFNQADSEIMAGILNENNIGLVSTEEEADAIIVNTCYVKLPTESKVINRIKN 65

Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELEGV----SIVGVQQIDRVVEVVEETLKGHEVRLL 174
            +     K ++V GC+ +   D K+LE +    S +G  Q+++  +VV+ T+ G  VR  
Sbjct: 66  LQKQYPDKKIIVGGCMVE--VDPKKLEAIGPNCSWIGPHQLNKTADVVKSTIGGEIVREF 123

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
                P + +PK+R++ ++ ++ I  GCLGACTYC T+ ARGHL SY ++ +V   R  I
Sbjct: 124 GFSDEPKVCVPKIRKDPYIHVIQICEGCLGACTYCCTRFARGHLNSYPIKDIVEEARLAI 183

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
            DG  E+ L+++DT A+G+D G  L  L+  + +    DG   +R+GM +P  I   L  
Sbjct: 184 EDGCVEIELTAQDTSAFGKDTGEKLSDLIKEVAS---LDGDFRVRVGMMHPRNIGNDLDN 240

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           + E  +   VY F+H+P+QSGSD VL  M R +T+ D++ +V +  + +P + IATDII 
Sbjct: 241 LIEAFKMEKVYDFIHLPIQSGSDKVLREMGRNHTVDDYKNIVYSFKQAIPDITIATDIII 300

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           G+P ET+EDF +T  LI+E KF  +H+S++  R G  ++ +  +P   +K+RS+ L+ +
Sbjct: 301 GYPTETEEDFMKTAELIREIKFNLIHLSKYQHREGAISSSLDNIPFDDMKRRSKYLSEI 359


>gi|193084232|gb|ACF09895.1| MiaB-like tRNA modifying enzyme [uncultured marine crenarchaeote
           AD1000-23-H12]
          Length = 422

 Score =  251 bits (641), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 131/358 (36%), Positives = 214/358 (59%), Gaps = 5/358 (1%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           ++++++GCS N +D+E ++G LS  GY + +N  ++D+ +I TCTVK P+ + M   I  
Sbjct: 3   VHVESYGCSANIADAEMISGLLSQKGYNVLNNDPDSDLNVIVTCTVKDPTFNKMVKRIKS 62

Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
             S  KPL++AGC+P+   D  L+  +  S++    +   V+  +  L G +   +  K+
Sbjct: 63  LSSTGKPLIIAGCMPKTELDKILQINDQASLLDPGSVHLAVDAAKAALAGEKFESISSKR 122

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
              + LP++R N  V I  ++ GCL  CT+C+ K ARG L SY    +V  +   + DG 
Sbjct: 123 SNKVLLPRLRSNPVVHIAEVSQGCLSKCTFCQVKFARGGLVSYRPLDIVREIEQAVIDGC 182

Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           +E+WL+S+D G YG+DI  +LP LLN I+ ++  DG  M+R+GM NP  + E + ++   
Sbjct: 183 REIWLTSQDIGCYGKDIKTSLPELLN-IICDI--DGDFMVRVGMMNPMHLDEIIDDLITS 239

Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
              P ++ FLH+PVQSGSD +L  M R ++++DF   V       P + ++TDII GFP 
Sbjct: 240 YMDPKIFKFLHIPVQSGSDEILKLMKRMHSVNDFELTVKKFRNAFPNISLSTDIIVGFPD 299

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 416
           ETD  F +T++L++   F  V+IS+F  RPGT A     +P  +VK+RS+ + +V ++
Sbjct: 300 ETDLQFQETLDLVRRINFDTVNISRFGSRPGTEAYSKPILPHKIVKERSKLMHTVAKS 357


>gi|15899133|ref|NP_343738.1| hypothetical protein SSO2380 [Sulfolobus solfataricus P2]
 gi|284173752|ref|ZP_06387721.1| hypothetical protein Ssol98_03728 [Sulfolobus solfataricus 98/2]
 gi|384432728|ref|YP_005642086.1| MiaB family RNA modification protein [Sulfolobus solfataricus 98/2]
 gi|13815682|gb|AAK42528.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261600882|gb|ACX90485.1| RNA modification enzyme, MiaB family [Sulfolobus solfataricus 98/2]
          Length = 421

 Score =  251 bits (641), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 137/394 (34%), Positives = 225/394 (57%), Gaps = 11/394 (2%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           + IY++T+GC+ N++D+  M   L + GY   +N E ADI ++NTC V+  ++  M   I
Sbjct: 2   KNIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERMKQRI 61

Query: 119 AKCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
            +  +  K LVVAGC+     +  L      S++G Q ++R+V++V+      E R +  
Sbjct: 62  KELNTLSKKLVVAGCMSSAEPATVLSIAPNASLIGPQSVERIVDIVK-----SEERKIVI 116

Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
           +   AL  P+    K + I+P+  GC G C++C TK AR  L SY +  +V   R  I  
Sbjct: 117 EGDRALITPRTFDGK-IAIIPVADGCAGNCSFCITKLARRKLRSYPLREIVNAARDAIQS 175

Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
           G +E+ L+ +DT AYG D+G ++  L++ +      DG  M+RIGM  P   +  + ++ 
Sbjct: 176 GAREIELTGQDTAAYGLDLGGSIS-LVDVVNKVADIDGDFMIRIGMMTPEQAMRIMDDLI 234

Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           E +R+P VY F+H+PVQSG D VL  MNR+YT+ +++ ++  +   +P + I TDII G 
Sbjct: 235 EAIRNPKVYKFIHLPVQSGDDRVLKLMNRKYTVDEYKELISEIRHKIPFVNITTDIIVGH 294

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE- 415
           PGE +E FN T+ L+KE +F ++H++ +  RP T +A M +VP ++ KKR +    ++E 
Sbjct: 295 PGEDEEAFNNTLLLMKELRFERIHLAMYSIRPNTRSASMPQVPDSIKKKRIQIANKLYED 354

Query: 416 -AFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
            A + +L   G   R+  TE+   G  + RL  +
Sbjct: 355 LALSIHLDYVGSTSRVITTELGRKGSVIGRLMNY 388


>gi|68445550|dbj|BAE03259.1| hypothetical conserved protein [unclutured Candidatus Nitrosocaldus
           sp.]
          Length = 454

 Score =  251 bits (641), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 142/374 (37%), Positives = 215/374 (57%), Gaps = 13/374 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           ++++ +GCS + SD E +AG +   GY L  N +EAD  +I TC VK  + + M   I +
Sbjct: 10  VWLEVYGCSSSLSDGEIIAGIIVGKGYELASNFDEADASIIVTCVVKDATANRMVERIKR 69

Query: 121 CKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
             S  KPLVVAGC+ +   +R  +     SIVG   IDRV   +   L G  + LL    
Sbjct: 70  LSS--KPLVVAGCMAKAEPNRIRRFNPRASIVGPNAIDRVDTALASALDGKGIVLLD-GS 126

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
           +  + LPK+R N  + ++ I  GCL  CT+C+T+ A+G L SY +  +V +VR  +  G 
Sbjct: 127 MQKVGLPKIRVNPVISMVQIGSGCLSECTFCETRIAKGRLTSYRIGDIVRQVREDVEQGC 186

Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           +EVWL+S D GAYGRDIG NL  L+ A+ +    D   M+R+GM NP ++   L ++ E 
Sbjct: 187 REVWLTSTDNGAYGRDIGTNLVELIKAVCS---IDAEFMIRVGMMNPQYLPLMLDDLIEA 243

Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
            R   V+ F+H+PVQSGSD VL  M R +  S F  +V      +    IATD+I GFP 
Sbjct: 244 YRDDKVFKFIHIPVQSGSDRVLRLMRRGHRASTFIDMVKRFRRELKLCTIATDMIVGFPS 303

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV----- 413
           E++EDF+ +++L+ E +   V++S++  RPGT A+RM+++   V+ +RS+ +  V     
Sbjct: 304 ESEEDFDASIDLLLEVEPDIVNVSKYSARPGTEASRMEQLSKQVINERSKVMHDVVSRVC 363

Query: 414 FEAFTPYLGMEGRV 427
           +     + G EG V
Sbjct: 364 YSRNLAWKGWEGTV 377


>gi|325959667|ref|YP_004291133.1| MiaB family RNA modification protein [Methanobacterium sp. AL-21]
 gi|325331099|gb|ADZ10161.1| RNA modification enzyme, MiaB family [Methanobacterium sp. AL-21]
          Length = 425

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 134/359 (37%), Positives = 213/359 (59%), Gaps = 11/359 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y+ T GC+ NQ+DS+ MAG L      L D  E+AD  ++NTC VK P++  + T I K
Sbjct: 3   VYIDTVGCTFNQADSQIMAGILKENRVELVDTPEDADTIIMNTCYVKHPTEQKVLTKIKK 62

Query: 121 CKSA--KKPLVVAGCV----PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
            +    +  L+++GC+    P+   D       S +G  +I    E+V    +G+ VR  
Sbjct: 63  MQEQYPESKLLISGCMVEIDPEKLADAAP--EASWIGPHKIKSTYEIVNSVHEGNIVRET 120

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
                P + LPKVR N  + I+ I  GC G CTYC T+ ARG + SY+ E +       +
Sbjct: 121 GFSSEPKVGLPKVRTNPIIHIIQICEGCDGFCTYCCTRFARGRIQSYSSEMIKKEAEQAV 180

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
            +G KE+ L+++DT AYGRD G +L  L+ ++++++  DG   LR+GM +P  I+  +  
Sbjct: 181 TEGCKEIQLTAQDTAAYGRDTGESLADLI-SMISDI--DGKFKLRVGMMHPKSIMNQVDP 237

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           I +  +    Y FLH+P+QSGSD VL  MNR +T+ +++T+V    E +P + I+TDII 
Sbjct: 238 IIKAFKKGKCYKFLHLPIQSGSDTVLHDMNRCHTVDEYKTIVSRFREEIPDISISTDIIV 297

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           G+P ETD+DF  T+NLIKE +   +HIS++  RPGT +++++++    +K+RS+ L  +
Sbjct: 298 GYPTETDDDFKATLNLIKELEPDFLHISKYMHRPGTTSSQLEEIEHETMKERSKALNDL 356


>gi|408403887|ref|YP_006861870.1| hypothetical protein Ngar_c12730 [Candidatus Nitrososphaera
           gargensis Ga9.2]
 gi|408364483|gb|AFU58213.1| hypothetical protein Ngar_c12730 [Candidatus Nitrososphaera
           gargensis Ga9.2]
          Length = 435

 Score =  247 bits (631), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 133/355 (37%), Positives = 210/355 (59%), Gaps = 8/355 (2%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           ++++ +GCS + +DSE ++G L   GY +     E  + LI TC+VK  ++  M + I  
Sbjct: 9   VWVEAYGCSASMADSEMISGLLKGAGYEIASKQSEGALNLIVTCSVKDTTEHRMVSRIKA 68

Query: 121 CKSAKKPLVVAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
              + KPLVVAGC+P+  R  ++ L  + S++G   I++ V+VV   L G  +  L    
Sbjct: 69  MSKSGKPLVVAGCLPKADRAKVESLNSLASLLGPHSIEKAVDVVGSALAGGRLVALEDSV 128

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
              +++P+VR N  V I+ I  GC+  CT+C+TK A+G L SY +  ++ +++  I  G 
Sbjct: 129 ADKVNIPRVRLNPMVSIVEIASGCMSECTFCQTKIAKGWLRSYRIGDIMRQIKADINAGC 188

Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           KEVWL+S D G YG+D+G +L  LL A  +    +G   +R+GM NP ++ E L  + +V
Sbjct: 189 KEVWLASTDNGCYGKDMGTDLVELLRACCS---IEGDFKIRLGMMNPMYVPEMLNRMVDV 245

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              +  ++ FLH+PV+SGSD VL  M R +T   F   V      +P M I+TD+I GFP
Sbjct: 246 FYENEKLFRFLHIPVESGSDRVLRKMKRGHTTKTFLDAVQAFRSKIPEMTISTDVIVGFP 305

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK--KVPSAVVKKRSREL 410
            ET++DF +T++L++  +   V+IS++  RPGT AA+ K  +V S V K+RS  L
Sbjct: 306 SETEDDFKETLDLVERAEPDIVNISRYSARPGTEAAKWKGMRVSSQVAKERSERL 360


>gi|388254688|gb|AFK24805.1| MiaB-like tRNA modifying enzyme [uncultured archaeon]
          Length = 450

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 132/355 (37%), Positives = 206/355 (58%), Gaps = 8/355 (2%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           ++++ +GCS + +DSE ++G L   GY +  N  E  + LI TC+VK  ++  M + I  
Sbjct: 27  VWIEAYGCSASMADSEMISGLLKGSGYEIASNQSEGALNLIVTCSVKDTTEHRMVSRIKA 86

Query: 121 CKSAKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
              + KPLV+AGC+P+  R   E      S++G   I+    VV   L G  +  L    
Sbjct: 87  LSRSGKPLVIAGCLPKADRAKVEALNSSASLLGPHSIESAPAVVGSALAGSPMVALEDSA 146

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
              +++P+VR N  V I+ I  GC+  CT+C+TK A+G L SY +  ++ ++++ +  G 
Sbjct: 147 SDKINIPRVRLNPTVSIVEIASGCMSECTFCQTKIAKGWLRSYRIGDIMRQIKSDVEAGC 206

Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           KE+WL+S D G YG+D+G +L  LLNA  +    +G  M+R+GM NP ++ E L  +   
Sbjct: 207 KEIWLASTDNGCYGKDMGTDLVELLNACSS---IEGDFMIRLGMMNPMYMPEMLDRMVNT 263

Query: 299 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
            + +  ++ FLH+PV+SGSD +L  M R ++   F   V T    +P M I+TDII GFP
Sbjct: 264 FQENDKLFKFLHIPVESGSDRMLRKMKRGHSAKTFLDAVKTFRSKIPEMTISTDIIVGFP 323

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK--KVPSAVVKKRSREL 410
            ET+ DF +T+NL++  +   V+IS++  RPGT AA+ K  +V S V K RS  L
Sbjct: 324 SETESDFEETLNLVERAEPDIVNISRYGARPGTEAAKWKGMRVSSQVAKDRSERL 378


>gi|347523463|ref|YP_004781033.1| RNA modification enzyme, MiaB family [Pyrolobus fumarii 1A]
 gi|343460345|gb|AEM38781.1| RNA modification enzyme, MiaB family [Pyrolobus fumarii 1A]
          Length = 453

 Score =  245 bits (626), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 149/402 (37%), Positives = 226/402 (56%), Gaps = 21/402 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++T+GC+ N +DS  M+  L++ GY + D+ E+AD+ +INTCTV+  ++  M   I +
Sbjct: 6   VYIETYGCALNHADSAIMSSVLASRGYTIVDSIEDADVIIINTCTVRLDTEQRMVKRIKE 65

Query: 121 C--KSAK-KPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRL-- 173
              K  K K +V+AGC+ +    L  +   G  +V    + R+   VE    G E+ +  
Sbjct: 66  VWRKYGKSKRIVIAGCLAKAQPYLVKRVAPGAVLVSPGNVHRIYLAVE---SGTELLVED 122

Query: 174 -LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
            L RK+LP    P+  ++  V  + I  GCL  C +C TK AR +L S  +E +V  V+ 
Sbjct: 123 PLERKRLP----PRPWKHGVVAEVVIQEGCLSDCAFCITKFARRYLRSQPIEEIVDYVKK 178

Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFI 288
           ++  GV E+ L+ +DT  YG DI     LP LL  I  V E P      +R+GM +P   
Sbjct: 179 LVEAGVVEIRLTGQDTATYGVDIYGKRMLPKLLEEIASVVESPDGCKAYVRVGMMSPDQA 238

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           L    E+ +++ HPC++ FLH+PVQSG D VL  M REYT+ ++R +V      +PG+ I
Sbjct: 239 LPFWDELLDIMSHPCIFKFLHIPVQSGDDRVLRVMRREYTVDEYRRMVYEARSKLPGVTI 298

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
           ATDII G PGE +E F  TV L++E  F +VH++Q+ PRP T AAR+ +VP  V K+RSR
Sbjct: 299 ATDIIVGHPGEDEEAFENTVRLVEELLFERVHLAQYTPRPRTLAARLPQVPDPVKKERSR 358

Query: 409 ELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
            L  V E   +  +    G    + +TE  ++G  + R   +
Sbjct: 359 RLQRVIEDVGYRVHASYVGANALLVVTEEGSEGTLVARTHNY 400


>gi|118576134|ref|YP_875877.1| 2-methylthioadenine synthetase [Cenarchaeum symbiosum A]
 gi|118194655|gb|ABK77573.1| 2-methylthioadenine synthetase [Cenarchaeum symbiosum A]
          Length = 421

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 139/352 (39%), Positives = 201/352 (57%), Gaps = 7/352 (1%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++ +GCS +Q+DSE ++G L   G+ L  + EE+D  +I TC VK  + + M   I  
Sbjct: 4   IWIEAYGCSASQADSEMISGLLVNGGHTLAASPEESDAGVIVTCAVKDATANRMVHRIKM 63

Query: 121 CKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
                +PLVVAGC+P+       +   G +++G   I R V VVE  L+G     L    
Sbjct: 64  L--GGRPLVVAGCLPKAEPGTMARISPGAALMGPNSIGRTVPVVEAALRGERRIELDDTD 121

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
           L    LPKVR N+ V I+ I  GCL  CT+C+TK A+G LGSY +  +V +VR  + DG 
Sbjct: 122 LTKTGLPKVRLNEAVGIVEIASGCLSECTFCQTKLAKGDLGSYRIGDIVRQVRAEVDDGC 181

Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
            EVWL+S D G YG DI  +LP LL+A++  +P  G   +R+GM NP ++    + +A+ 
Sbjct: 182 SEVWLTSTDNGCYGFDISEDLPGLLDAVIT-IP--GRFRVRVGMMNPMYMPRIREGLAKS 238

Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
            +   +Y FLH+PVQSGS  +L  M R  T   F            G  I+TD+I GFPG
Sbjct: 239 FQSDKLYRFLHIPVQSGSGRILGEMGRGRTAGIFADAARRFRSEFGGFTISTDVIVGFPG 298

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 410
           ETD D+  T  LI+E +   V++S++  RPGT AA  ++V    VK+RS+ +
Sbjct: 299 ETDGDYESTEALIEEVRPDTVNLSRYSARPGTEAAGREQVDVQTVKRRSKRM 350


>gi|304314978|ref|YP_003850125.1| 2-methylthioadenine synthetase [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588437|gb|ADL58812.1| predicted 2-methylthioadenine synthetase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 427

 Score =  241 bits (614), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 136/354 (38%), Positives = 208/354 (58%), Gaps = 12/354 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++TFGC+ NQ+DSE MAG LS  G +LT   +EAD+ ++NTC VK P++  +   I +
Sbjct: 6   VYIETFGCTFNQADSEIMAGVLSEAGASLT-GIDEADVIILNTCYVKHPTEHKVINRIKR 64

Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLL 174
            +     K LVVAGC+ +   D ++LE +S     +G  Q+ R  EVV    +G   R+ 
Sbjct: 65  IREMYPDKGLVVAGCMVE--IDPQKLESISGDASWLGPHQLMRTAEVVGAAYRGDVKRIT 122

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
                  + +P+VR N  + I+ I  GC G+C+YC T+ ARG + SY  + +V   R  I
Sbjct: 123 GFTSDVKVGVPRVRSNPLIHIIQICEGCSGSCSYCCTRFARGSIQSYPSDIIVQEAREAI 182

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
             G +E+ L+++DT AYG D G  L  L+  I  E+P  G   +R+GM +P  +L  L  
Sbjct: 183 EAGCREIQLTAQDTAAYGSDTGERLSDLIREI-TEIP--GDFRVRVGMMHPASVLRDLDG 239

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           + E  R   VYSFLH+PVQSGSD VL  M R +T+ DFR +VD     +P + IATDII 
Sbjct: 240 LVEAFRSEKVYSFLHLPVQSGSDRVLRDMGRGHTVDDFRMIVDRFRSRIPEISIATDIIV 299

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
           G+P E ++DF  T  L++E +   +H+S++  RP   ++ + ++    +++RS+
Sbjct: 300 GYPTEGEDDFLDTCRLLEEVRPGFIHLSKYRHRPRAFSSSLDEIDFRELRRRSK 353


>gi|374857474|dbj|BAL60326.1| hypothetical conserved protein, partial [uncultured crenarchaeote]
          Length = 434

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 139/362 (38%), Positives = 206/362 (56%), Gaps = 13/362 (3%)

Query: 73  SDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAG 132
           SD E +AG +   GY L  N +EAD  +I TC VK  + + M   I +  S  KPLVVAG
Sbjct: 2   SDGEIIAGIIVGKGYELASNFDEADASIIVTCVVKDATANRMVERIKRLSS--KPLVVAG 59

Query: 133 CVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRN 190
           C+ +   +R  +     SIVG   IDRV   +   L G  + LL    +  + LPK+R N
Sbjct: 60  CMAKAEPNRIRRFNPRASIVGPNAIDRVDTALASALDGKGIVLLD-GSMQKVGLPKIRVN 118

Query: 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGA 250
             + ++ I  GCL  CT+C+T+ A+G L SY +  +V +VR  +  G +EVWL+S D GA
Sbjct: 119 PVISMVQIGSGCLSECTFCETRIAKGRLTSYRIGDIVRQVREDVEQGCREVWLTSTDNGA 178

Query: 251 YGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHV 310
           YGRDIG NL  L+ A+ +    D   M+R+GM NP ++   L ++ E  R   V+ F+H+
Sbjct: 179 YGRDIGTNLVELIKAVCS---IDAEFMIRVGMMNPQYLPLMLDDLIEAYRDDKVFKFIHI 235

Query: 311 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 370
           PVQSGSD VL  M R +  S F  +V      +    IATD+I GFP E++EDF+ +++L
Sbjct: 236 PVQSGSDRVLRLMRRGHRASTFIDMVKRFRRELKLCTIATDMIVGFPSESEEDFDASIDL 295

Query: 371 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-----FEAFTPYLGMEG 425
           + E +   V++S++  RPGT A+RM+++   V+ +RS+ +  V     +     + G EG
Sbjct: 296 LLEVEPDIVNVSKYSARPGTEASRMEQLSKQVINERSKVMHDVVSRVCYSRNLAWKGWEG 355

Query: 426 RV 427
            V
Sbjct: 356 TV 357


>gi|348019711|gb|AEP43797.1| radical sam [Biston betularia]
          Length = 188

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 118/184 (64%), Positives = 139/184 (75%), Gaps = 2/184 (1%)

Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
           +L LPKVR+N  +EI+ IN GCL  CTYCKTKHARG LGSY  E +V R R    +GV E
Sbjct: 7   SLLLPKVRKNPHIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERARLSFQEGVVE 66

Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
           +WL+SEDTG YGRDIG +LP LL  +V E+ P+G   LR+GMTNPP+ILEHL+E+A ++ 
Sbjct: 67  IWLTSEDTGTYGRDIGTSLPELLWKLV-EVIPEGCR-LRLGMTNPPYILEHLEEVARIMH 124

Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
           HP VY FLHVPVQSGSD VLS M REY+  DF  VVD L E VPG+ IATDIICGFP ET
Sbjct: 125 HPRVYKFLHVPVQSGSDQVLSDMKREYSRKDFEHVVDFLRERVPGITIATDIICGFPTET 184

Query: 361 DEDF 364
           + DF
Sbjct: 185 EADF 188


>gi|444728295|gb|ELW68754.1| CDK5 regulatory subunit-associated protein 1-like 1 [Tupaia
           chinensis]
          Length = 494

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/166 (65%), Positives = 138/166 (83%), Gaps = 2/166 (1%)

Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
           GV E+WL+SEDTGAYGRD+G +LP LL  +VA +P     MLR+GMTNPP+ILEHL+E+A
Sbjct: 233 GVCEIWLTSEDTGAYGRDVGTDLPTLLWRLVAVIP--EGAMLRLGMTNPPYILEHLEEMA 290

Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           ++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VVD L E VPG+ IATDIICGF
Sbjct: 291 KILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGF 350

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
           PGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V
Sbjct: 351 PGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQV 396



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           ++DIED+++          F        V PK  K   + H    S   S S  IPG + 
Sbjct: 10  LDDIEDIVSQEDSKPRDRHF----ARKHVVPKVRKRNAQKHVQEESSPPSDS-TIPGIQK 64

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++      I K
Sbjct: 65  IWIRTWGCSHNNSDGEYMAGQLAAYGYQMTENASDADLWLLNSCTVKNPAEDHFRNAI-K 123

Query: 121 CKSA 124
           C +A
Sbjct: 124 CLNA 127



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 25/32 (78%)

Query: 200 VGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
           + CL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 122 IKCLNACTYCKTKHARGNLASYPIDELVDRAK 153


>gi|146303440|ref|YP_001190756.1| RNA modification protein [Metallosphaera sedula DSM 5348]
 gi|145701690|gb|ABP94832.1| RNA modification enzyme, MiaB family [Metallosphaera sedula DSM
           5348]
          Length = 418

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 139/389 (35%), Positives = 214/389 (55%), Gaps = 13/389 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY +T+GC+ N+ D+  M   L    + + ++ E+AD+ +INTC V+  ++  M   I +
Sbjct: 3   IYFETYGCALNKGDTYSMMTLLKGRNHEIVNSEEQADVLVINTCAVRMETEEKMKKRILE 62

Query: 121 CKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
                K LVVAGC+      L        S++G Q I  VV+ VE       +  LH  +
Sbjct: 63  LSKTGKKLVVAGCLAGAEPGLVMSLAPQSSLIGPQSIGDVVKAVESR---ERIVSLH-GE 118

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
           LP++ LP V     + ++PI  GC G+C +C TK AR  L SY    +V   R  I  G 
Sbjct: 119 LPSV-LPSVFEG-LISVIPIADGCAGSCNFCITKLARKELRSYPPRMIVETARKAIEKGA 176

Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAE 297
           KE+ L+ +DT AYG D+G +  I L  +V E+   +G  M+R+GM  P   +  L ++ +
Sbjct: 177 KEIELTGQDTAAYGLDLGRD--IRLADLVGEVSSLEGDFMVRVGMMTPELAMRQLDDLLD 234

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              +P VY F H+PVQSG+D VL AMNR+YTL +FR +V  + +  P + I TDII G P
Sbjct: 235 AWDNPKVYKFFHLPVQSGNDQVLRAMNRKYTLDEFREIVREIRKRFPLVNITTDIIVGHP 294

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 417
           GE +  F  T+NL+KE +F ++HI+ +  RP T +A M +VP  + K+R +   +++E  
Sbjct: 295 GEDENAFEDTLNLMKELRFERIHIAMYSLRPNTRSAMMTQVPGPIKKERLKRAVTLYEEL 354

Query: 418 TPYLGME--GRVERIWITEIAADGIHLVR 444
           +  +  E  GR  ++ + E   D   + R
Sbjct: 355 SREIHREYVGRKMKVLVLENGKDNTKIGR 383


>gi|15678846|ref|NP_275963.1| hypothetical protein MTH826 [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|6226399|sp|O26914.1|AMTAB_METTH RecName: Full=Probable threonylcarbamoyladenosine tRNA
           methylthiotransferase; AltName: Full=tRNA-t(6)A37
           methylthiotransferase
 gi|2621916|gb|AAB85324.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 424

 Score =  238 bits (607), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 133/356 (37%), Positives = 210/356 (58%), Gaps = 12/356 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++TFGC+ NQ+DSE MAG L   G  LT   ++AD+ +INTC VK P++  +   I K
Sbjct: 6   VYIETFGCTFNQADSEIMAGVLREEGAVLT-GIDDADVIIINTCYVKHPTEHKVINRIKK 64

Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLL 174
            +    +K LVVAGC+ +   D  +LE +S     +G  Q+ R  + V     G   R+ 
Sbjct: 65  IQETYPEKGLVVAGCMVE--IDPSKLEAISGDASWLGPHQLRRAPQAVRAASNGLVERIT 122

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
                  + +P+VR N  + I+PI  GC G+C+YC T+ ARG + SY  + ++   R  +
Sbjct: 123 GFTSDVKVKVPRVRSNPLIHIIPICEGCNGSCSYCCTRFARGRIQSYPSDLIISEAREAV 182

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
           A G +E+ L+++DT AYG D G  L  ++  I + +P  G+  +R+GM +P  +L  L  
Sbjct: 183 ASGCREIQLTAQDTAAYGVDTGEKLSDIIKGI-SGIP--GNFRIRVGMMHPASVLRDLDG 239

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           + E  +   VYSFLH+PVQSGSD+VL+ M R +T+ +FR +V+     +P + IATDII 
Sbjct: 240 LVEAFKSEKVYSFLHLPVQSGSDSVLADMERGHTVDEFRMIVERFRSEIPDISIATDIIV 299

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 410
           G+P E  EDF  T +L++E K   +H+S++  RP   ++ + ++    +++RSR L
Sbjct: 300 GYPTEEREDFMDTCSLLEEVKPSFIHLSKYRHRPRARSSSLDEIDFRELRRRSRAL 355


>gi|330835295|ref|YP_004410023.1| RNA modification protein [Metallosphaera cuprina Ar-4]
 gi|329567434|gb|AEB95539.1| RNA modification protein [Metallosphaera cuprina Ar-4]
          Length = 418

 Score =  238 bits (607), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 133/376 (35%), Positives = 211/376 (56%), Gaps = 18/376 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y +T+GC+ N+ D+  M   L    + + +  E AD+ +INTC V+  ++  M   I +
Sbjct: 3   VYFETYGCALNKGDTYSMMSLLRERNHEIVETLEGADVVVINTCAVRMETEEKMKKRIRE 62

Query: 121 CKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
                K LV+AGC+      L        S++G Q I  +V+VVE     +E  +    K
Sbjct: 63  LSKTGKKLVIAGCLTGAQPGLVSSLSPSSSMIGPQSISDIVKVVE----SNERVISLDSK 118

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
            P++ LP+V  +  + ++PI  GC G C +C TK AR +L SY + ++V  V+ +I+ G 
Sbjct: 119 TPSI-LPRVF-DGLISVIPIEDGCAGNCNFCITKLARRNLRSYPLRNIVETVKRMISQGA 176

Query: 239 KEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
           KE+ L+ +DT  YG D+G  V LP ++  + +    +G  M+R+GM  P   + HL  I 
Sbjct: 177 KEIELTGQDTAVYGLDMGGKVTLPDVVKEVAS---LEGDFMIRVGMMTPEMAMRHLDSIL 233

Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           E   +P VY F H+PVQSG+D VL  MNR+YT+ +FR +V  + +    + I TDII G 
Sbjct: 234 EAWENPKVYKFFHIPVQSGNDKVLREMNRKYTVDEFRAIVKEIRKKFRLVNITTDIIVGH 293

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 416
           PGE D  F  T+NL+KE +F ++HI+ +  RP T ++ + +VP  + K+R +   S++E 
Sbjct: 294 PGEDDSAFEDTLNLMKELRFERIHIAMYSIRPNTRSSMLAQVPGPIKKERLKRAVSLYEE 353

Query: 417 FT-----PYLGMEGRV 427
            +      YLG + RV
Sbjct: 354 LSREVHKEYLGRQMRV 369


>gi|84489190|ref|YP_447422.1| 2-methylthioadenine synthetase [Methanosphaera stadtmanae DSM 3091]
 gi|84372509|gb|ABC56779.1| predicted 2-methylthioadenine synthetase [Methanosphaera stadtmanae
           DSM 3091]
          Length = 424

 Score =  238 bits (606), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 137/389 (35%), Positives = 220/389 (56%), Gaps = 17/389 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY++T GC+ NQ+D++ MA  L A  Y +  + EEAD+ ++NTC VK P++  M T I K
Sbjct: 3   IYLETHGCTFNQADTDIMANIL-AKKYDIVYDVEEADVIILNTCYVKLPTEQKMITKIRK 61

Query: 121 CKSA--KKPLVVAGC-VPQGSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHR 176
            K+    K L++ GC V    + L++  G    +G  ++D+V EVVE+ + G  V    +
Sbjct: 62  YKTEFPDKKLIIGGCMVEVDDKRLEKFAGDDCWIGPHKLDKVDEVVEKAINGEVVHEYGK 121

Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
            +       K      V IL I  GC G CT+C T+ ARG L SY ++ +V   +  +  
Sbjct: 122 TRAIKAGKGKKNSESLVHILQICEGCNGQCTFCCTRIARGFLISYPIDVIVEEAKDAVEH 181

Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
           G KE+ ++++DT  +G D G +   LLN + A    +G   +R+GM NP  I   L E+ 
Sbjct: 182 GCKELQVTAQDTACFGMDTGESFADLLNKLGA---IEGDFRIRVGMMNPQSIKNQLHEVI 238

Query: 297 EVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
           +  ++   +++F+H+P+QSGS  VL  MNR++TL +++ +++   + +P M +ATDII G
Sbjct: 239 DAFKNNDKIFNFVHLPIQSGSPKVLKEMNRKHTLDEYKYILNEFRKEIPQMSLATDIIVG 298

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-- 413
           +P ET+EDFNQT+ L+KE K   VHIS++  RPG  +  +K++   ++K RS  +  V  
Sbjct: 299 YPTETEEDFNQTLELLKEIKPDIVHISKYMHRPGAKSNHLKEIDHNIMKNRSHRVNQVKT 358

Query: 414 ---FEAFTPYLGMEGRVERIWITEIAADG 439
               E    Y   E  ++ + IT   + G
Sbjct: 359 EVMLEKNKEY---ENTIQNVLITSKGSSG 384


>gi|336476780|ref|YP_004615921.1| MiaB-like tRNA modifying protein [Methanosalsum zhilinae DSM 4017]
 gi|335930161|gb|AEH60702.1| MiaB-like tRNA modifying enzyme [Methanosalsum zhilinae DSM 4017]
          Length = 431

 Score =  237 bits (605), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 125/363 (34%), Positives = 211/363 (58%), Gaps = 11/363 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +++  +GCS NQ+ +E MA +++ +G+ L D+   A   +INTCTVKS ++  +   I++
Sbjct: 3   VHILNYGCSANQASAEIMAAKINEYGHELVDDESSAQAVVINTCTVKSTTEKKILHRISE 62

Query: 121 CKSAKKPLVVAGCVPQ-GSRDLKELEG----VSIVGVQQIDRVVEVVEETLKG---HEVR 172
               ++ LVV GC+PQ   +D+ E       + +  + +I  ++  ++ + KG     + 
Sbjct: 63  IGKTERELVVTGCMPQVQMKDIIEANSQAHVLGVNSITEIGNILNKIQNSNKGSVKDRIE 122

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           LL       L++ ++R N  + I  I+ GC   C+YC  + ARG L S+  + +V  V+ 
Sbjct: 123 LLSSVPEGFLNVDRIRHNPNIHICQISQGCNHRCSYCIVRDARGPLTSFDPKDIVDDVKK 182

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
            I++G +EVW++S+D G YG DI  +LP LLN ++ ++P      +R+GM NP  +L  L
Sbjct: 183 AISEGCREVWITSQDNGQYGADIQSSLPELLN-MLCKIPEHFK--IRVGMMNPFSVLPIL 239

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
            ++ +   +  +Y  LH+P+QS S+  LSAMNR +++ D   ++         + + TDI
Sbjct: 240 DDLIKAFENDKIYKLLHLPIQSASENTLSAMNRNHSMKDVEDIISRFRYRFGDLTLFTDI 299

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
           I GFP ETD+DFN++V  IKEY   +++IS++ PRPGTPA   + + S +V KRS+ L  
Sbjct: 300 IVGFPYETDDDFNKSVEWIKEYCPDKINISRYTPRPGTPAFNYRNIDSRIVAKRSKTLHK 359

Query: 413 VFE 415
             E
Sbjct: 360 ACE 362


>gi|284162243|ref|YP_003400866.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631]
 gi|284012240|gb|ADB58193.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631]
          Length = 423

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 145/401 (36%), Positives = 232/401 (57%), Gaps = 24/401 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++T+GC+ NQSDS+ M G L A  + L D+++EAD+ +IN+C V   ++  +      
Sbjct: 4   VYIETYGCTMNQSDSDIMRGIL-AKNFELVDSADEADVVVINSCGVVDFTERKILKRAES 62

Query: 121 CKSAKKPLVVAGCVPQ-GSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
            K   K +V+AGC+P+  ++   E+    VS   V  ID VV+ V   LKG +  L+ R 
Sbjct: 63  LKRQGKKVVMAGCLPRIATKKCLEVSDALVSPDNVHVIDLVVKSV---LKGEKPILIDRT 119

Query: 178 KLPALDLPKVRRN---KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
            +   ++  V+R      + I+ I  GC G C++C T+ ARG L S+  ES+V  VR  +
Sbjct: 120 DVDKSEISCVKRRLRENAIAIVSIAEGCTGRCSFCATRFARGRLRSFKFESIVDEVRKCV 179

Query: 235 ADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
            +G KE+ ++S+DTGAYG D G   LP LL AI +E+  +G   +R+GM NP   +E L 
Sbjct: 180 ENGFKEIQITSQDTGAYGLDKGRYMLPDLLRAI-SEI--EGDFRVRVGMMNPRHAVEMLD 236

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           ++        +Y F+H+PVQSG + VL  MNR++++ DF  VV         + ++TD+I
Sbjct: 237 DLLNAFESEKMYKFIHIPVQSGDENVLRDMNRDHSVEDFIEVVKAFRRRFDDVMVSTDVI 296

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
            GFP ET+E F +T  LIK  +   V+I++F  RP TPA ++K++   +VK+RSR+LT +
Sbjct: 297 VGFPTETEEAFWRTYELIKNVEPDIVNITRFSKRPFTPAYKLKEIHGWIVKERSRKLTEL 356

Query: 414 FEAFTPYLGME------GRVERIWITEIAADGIHLVRLEQF 448
             +    +G++      G+  R+ IT+   +G  L R + +
Sbjct: 357 ARS----IGLKRNRRFIGKRLRVLITKNGKNGTKLARADSY 393


>gi|124027960|ref|YP_001013280.1| hypothetical protein Hbut_1092 [Hyperthermus butylicus DSM 5456]
 gi|123978654|gb|ABM80935.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456]
          Length = 441

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 147/381 (38%), Positives = 213/381 (55%), Gaps = 29/381 (7%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++T+GC+ N +D+  M   LS+ GY+ T+  +EAD+ +INTCTV+  +++ M   IA+
Sbjct: 6   VYIETYGCALNMADTAIMRSVLSSRGYSFTNCVDEADVIIINTCTVRLDTEARMKRRIAE 65

Query: 121 CKSAKKP----LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
             +  +     LVVAGC+         R   +   VS   V  +D  VE      +G ++
Sbjct: 66  LAAIAEKTGARLVVAGCMASAQPYTVKRIAPKAVLVSTYNVHLVDIAVE------RGLDL 119

Query: 172 RLLHRKKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
               R+K   L  P  R   R K  E+ PI  GCLG C++C TK AR  + S  VE++V 
Sbjct: 120 LTPPREKPKPLFKPTPRLMLRGKIAEV-PIAEGCLGDCSFCITKIARRRVYSRPVENIVK 178

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPP 286
            VR ++  G  E+ L+ +D   YG D+     LP L+  ++     +G  M+RIGM +P 
Sbjct: 179 LVRELVRLGAVEIRLTGQDIAVYGIDLYGKRLLPELVRRVIE---VEGDFMVRIGMMSPD 235

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
            +   L E  EV RHP V+ F+H+PVQSG D VL  M R YT+ ++R +V  +   VPG+
Sbjct: 236 QLEPILDEFLEVFRHPKVFKFVHLPVQSGDDRVLRIMKRNYTVDEYRAIVREIRNKVPGV 295

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406
            IATDII G PGE +E F  TV LI+E +F +VH++Q+ PR  T AA + +VP  V KKR
Sbjct: 296 MIATDIIVGHPGEDEEAFENTVRLIEELRFERVHLAQYTPRQRTVAAGLPQVPDPVKKKR 355

Query: 407 SRELTSV-----FEAFTPYLG 422
           S+ LT V      E    Y+G
Sbjct: 356 SKRLTEVVMRIGLEEHRRYIG 376


>gi|110773695|ref|XP_396696.3| PREDICTED: CDKAL1-like protein-like [Apis mellifera]
          Length = 264

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 120/209 (57%), Positives = 150/209 (71%), Gaps = 10/209 (4%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPGT+TIY+KT+GC+HN SDSEYMAGQL+A+GY LT+N  +AD+WL+N+CTVKSP++   
Sbjct: 56  IPGTQTIYVKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYKADLWLLNSCTVKSPAEDHF 115

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I   K   K +VVAGCVPQG+     L+G+S++GVQQIDRVVEVVEETLKG+ VR L
Sbjct: 116 RNEIEAGKKIGKHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFL 175

Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +KK         +L LPKVRRN  +EI+ IN GCL  CTYCKTKHARG LGSY  E L+
Sbjct: 176 QQKKEAGKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEELL 235

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
             V+T     ++ +WL  +    YGRDIG
Sbjct: 236 -IVQTAFRKRLR-LWLHPK-IQDYGRDIG 261


>gi|255514141|gb|EET90403.1| RNA modification enzyme, MiaB family [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 423

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 120/353 (33%), Positives = 205/353 (58%), Gaps = 6/353 (1%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           Y+KT+GC+ NQ+DS+ +   L +      ++ ++AD+ ++NTCTVK+P++  +  L+ K 
Sbjct: 4   YIKTYGCTLNQADSDIINSVLDSANIGQAESMQDADVIIVNTCTVKNPTEQKISDLLKKL 63

Query: 122 KSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           +S K+ ++V GC+   + D+        SIV +  ++ + + V  T  G  V +   +K 
Sbjct: 64  ESEKRKVLVTGCMAAANPDIISNASPSASIVTISNLEDMPDAVSRTASGERVVMSSLQKR 123

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
             L   K R+     I P++ GC+ +C++C+TK AR  L S++ + ++  V+  +  G  
Sbjct: 124 DRLASFKPRQGPVARI-PVSDGCMSSCSFCETKFARSALNSFSEDLILNAVKYSVKSGAV 182

Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
           E+ ++S+D GAYG D   N+ +L+  I      +G   +RIGM NP  +  ++ E A  L
Sbjct: 183 EIDITSQDIGAYGADRKSNIALLMEKIS---RIEGFFKVRIGMLNPERLAGYINEFASAL 239

Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
            +   Y F H+P+QSGSD+VL +M R YT+  +   VD L   VPG+ I TD+I G+P E
Sbjct: 240 GNEKFYKFAHLPLQSGSDSVLKSMRRNYTVDQYLEFVDVLRSYVPGISIETDMIVGYPTE 299

Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
           TDEDF  ++ ++K ++    +IS+F  R  T A +MK++   ++K+RS E+ S
Sbjct: 300 TDEDFTNSIEVLKSFRPDVTNISRFGARRHTAAHKMKQLDQTLIKERSSEMYS 352


>gi|70606747|ref|YP_255617.1| hypothetical protein Saci_0962 [Sulfolobus acidocaldarius DSM 639]
 gi|68567395|gb|AAY80324.1| universally conserved protein [Sulfolobus acidocaldarius DSM 639]
          Length = 421

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 206/361 (57%), Gaps = 12/361 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++T+GC+ N+ DS  M   L   G+ + DN ++A+I +INTC V+  ++  M   I +
Sbjct: 3   VYIETYGCALNKGDSYIMMTLLRDKGHEIVDNIQDAEILVINTCAVRLETEERMKQRIKE 62

Query: 121 CKSAK-KPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
            K    K LVVAGC+     +  +      S++G Q + ++V+VVE + K  +V L   K
Sbjct: 63  LKKYNDKRLVVAGCLASAEPAVVVSLAPEASVIGPQSVQKIVDVVENS-KQRQVYLNEDK 121

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
            L     PKV   K + ILPI  GC G C +C TK AR  L SY    +V  VR  +  G
Sbjct: 122 PLIT---PKVFDGK-IAILPIADGCAGDCNFCITKLARRKLRSYPPHLIVESVRDAVRKG 177

Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIA 296
             E+ LS +DT AYG D+G    I L+ +V ++   +G  M+RIGM  P   +  +  I 
Sbjct: 178 AVEIELSGQDTAAYGLDLG---QIKLSDLVRKVTEVEGDFMIRIGMMTPEQAMRDIDGII 234

Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           EVLR   VY F+H+PVQSG D VL  MNR+YT+ +++ +V  + + VP + I TDII G 
Sbjct: 235 EVLRETKVYKFIHLPVQSGDDNVLKLMNRKYTVDEYKDLVKEIRKKVPIVNITTDIIIGH 294

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 416
           PGE +  F  T+ L+++ KF ++H++ +  RP T +A MK+VP  V K+R +    ++E 
Sbjct: 295 PGEDENAFRNTLELMRDIKFERIHLAMYSIRPNTRSASMKQVPDPVKKERIQIANKLYEE 354

Query: 417 F 417
            
Sbjct: 355 L 355


>gi|159111403|ref|XP_001705933.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia ATCC 50803]
 gi|157434024|gb|EDO78259.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia ATCC 50803]
          Length = 525

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 144/449 (32%), Positives = 225/449 (50%), Gaps = 61/449 (13%)

Query: 45  LSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT---------DNSEE 95
           L+   S SP +     + M T GC HN ++S+ +A  L   G  +T         +++ +
Sbjct: 11  LAHAQSTSPLLTNVR-VMMVTMGCGHNAAESDIIASALQTAGAVITHSNGKYITPESARD 69

Query: 96  ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGS-------RDLKELEGVS 148
            D+  IN+CTVK+PS+      + K       +V+ GCVPQ         R     + + 
Sbjct: 70  VDVLYINSCTVKNPSEDKAFVHVQKGLEVGTVVVLGGCVPQSYGTVNDELRKASAAKQLI 129

Query: 149 IVGV---QQIDRVVEVVEETLKGHEVRLLHRKKLPALDL--------------------- 184
           I GV   Q +  +  ++ E +  H +   H  + PAL +                     
Sbjct: 130 ISGVLTQQWLAALPRLLREAIDLHILNNSHLLQ-PALRMTQPSDKAGVPAAISYVTKEAT 188

Query: 185 -----------PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
                      P  R N  ++I+    GC+G+CTYCKT H+RG L S  +++L+ R+R+ 
Sbjct: 189 KDVEVEYLKCTPVHRANPIIDIISTGSGCMGSCTYCKTCHSRGRLRSVPLDTLLARIRSS 248

Query: 234 IADGV-KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNPPFILE 290
           +AD + +E+WL+ EDT A+GR+      +LL  +      +  T  ML+IGMT+P  ++ 
Sbjct: 249 LADPIIRELWLTGEDTLAWGRESDATFAVLLQEVQKLFETENPTHKMLKIGMTDPDSVIN 308

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
               +   +R   VY FLH+PVQSGSD +L+ M R Y +  F      L   VP + + T
Sbjct: 309 QEDSLISFMRCKYVYKFLHLPVQSGSDRILTLMRRHYDIETFLRSCSKLQSAVPDLCLDT 368

Query: 351 DIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
           DIICGFPGETDED  Q++NL +  K     F  V+I+Q+Y R  TPAA M++VP++  ++
Sbjct: 369 DIICGFPGETDEDHAQSLNLFRNLKEDAPRFQVVNITQYYARKNTPAASMEQVPASKKRE 428

Query: 406 RSRELTSVFEAFTPYLGMEGRVERIWITE 434
           R+RE++ V +         G+V  I + E
Sbjct: 429 RTREMSEVVKNSFRRDQYHGQVHDIMVLE 457


>gi|212274679|ref|NP_001130719.1| uncharacterized protein LOC100191823 [Zea mays]
 gi|194689936|gb|ACF79052.1| unknown [Zea mays]
          Length = 308

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 103/121 (85%), Positives = 115/121 (95%)

Query: 323 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382
           MNREYT+ +FR VVDTL ELVPGMQIATDIICGFPGETDEDF++TVNL+KEY+FPQVHIS
Sbjct: 1   MNREYTVGEFRKVVDTLCELVPGMQIATDIICGFPGETDEDFSETVNLVKEYQFPQVHIS 60

Query: 383 QFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL 442
           QFYPRPGTPAARMKKVPS  VKKRSRELTSVFE+F+PY GMEG+VE+IWITEIA+DG+HL
Sbjct: 61  QFYPRPGTPAARMKKVPSNEVKKRSRELTSVFESFSPYQGMEGKVEKIWITEIASDGVHL 120

Query: 443 V 443
           V
Sbjct: 121 V 121


>gi|315424979|dbj|BAJ46654.1| tRNA modifying enzyme [Candidatus Caldiarchaeum subterraneum]
 gi|343484572|dbj|BAJ50226.1| 2-methylthioadenine synthase [Candidatus Caldiarchaeum
           subterraneum]
          Length = 432

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 136/393 (34%), Positives = 214/393 (54%), Gaps = 19/393 (4%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           + +Y + +GCS NQ+D E   G L   GY + +   EAD  ++ TC VK P+   M   I
Sbjct: 12  QKVYAEVYGCSANQADGEIALGILQKQGYIMVERPNEADYVVLVTCAVKKPTADRMIHRI 71

Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
            K  S    L+VAGC+  G  + + +  V+   V    R +  V   ++GH       K 
Sbjct: 72  KKFSSLGPRLIVAGCMATG--EAERVRRVAPEAVLLPPRSITEVSAAIEGHGFDGGGTK- 128

Query: 179 LPALDLPKVRRNKFVEILPINVGC-LGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
              L LP++R+N  + I+P++ GC    C++C    +R    SY V ++V  VR  + +G
Sbjct: 129 ---LGLPRLRKNPVIAIVPVSEGCRWSRCSFCIVPRSRPGYESYPVRAVVDEVRKAVNEG 185

Query: 238 VKEVWLSSEDTGAYGRDIGVNL-PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
            +EVWL+S+D G+YG + G NL P L+ ++ +    +G    RIGM NP ++   L+++ 
Sbjct: 186 CREVWLTSQDMGSYGLESGRNLLPELIESVNSL---EGKFYTRIGMMNPIYLKPILQKLV 242

Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           +      +Y F+HVPVQSGSD VL  MNR +++  F  VV+      P + ++TD+I G+
Sbjct: 243 KAYSGEKIYKFIHVPVQSGSDKVLKDMNRGHSVQLFYHVVEAFRRRFPSITVSTDLIVGY 302

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV--- 413
           P ETDEDF QT+ L+++ +   V++S+++PRPGTP   +K +P  VV +R  EL  +   
Sbjct: 303 PTETDEDFEQTLKLVEKTRPAVVNVSRYFPRPGTPGEGLKTLPHHVVARRVSELNDLLSK 362

Query: 414 --FEAFTPYLGMEGRVERIWITEIAADGIHLVR 444
              E+   +LG  G V    I E+   G  + R
Sbjct: 363 IQLESNEHWLGWVGEV---LINEVGKKGKMMGR 392


>gi|282163181|ref|YP_003355566.1| putative 2-methylthioadenine synthetase [Methanocella paludicola
           SANAE]
 gi|282155495|dbj|BAI60583.1| putative 2-methylthioadenine synthetase [Methanocella paludicola
           SANAE]
          Length = 406

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 213/386 (55%), Gaps = 22/386 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY++T GC+ N SDS+ +   + A G  +    EEAD  ++NTC V   +  +M  L A 
Sbjct: 3   IYIETHGCTANASDSQAIRNSVLASGGEVVGTPEEADTVVVNTCAVTEFTSKSM--LKAI 60

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            K + K +VVAGC+      L  L+G+         R +++ E        R+L    +P
Sbjct: 61  KKYSGKRVVVAGCMAAAQPYL--LKGI---------RNIQIAEAPGAEAVARML--GIMP 107

Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
           A   P ++    V  + I  GC G C+YC  +  RG L S  VE +V  ++T +  G +E
Sbjct: 108 AAGRPFIKGTSAV--VSIAEGCRGHCSYCIVRLVRGPLRSAPVEEVVHSIKTALRMGARE 165

Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
           + L+++DTGAYG D G  LP L+  I   L  +G   +R+GM NP  I + L ++A +  
Sbjct: 166 ILLTAQDTGAYGLDAGERLPALMKEI---LSIEGDYRIRLGMMNPFSIADILGDMARIFN 222

Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
            P VY F H+PVQSGSD +L  M R YT S +R +V  L + VPG+ ++TD I GFP ET
Sbjct: 223 DPRVYRFAHIPVQSGSDRILGLMERPYTESQYRDIVARLRQEVPGITLSTDYIVGFPTET 282

Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP- 419
           DEDF  T++ ++  +  +V+I++F PRPGTPAA M+ +P  + K+RSR LT +    T  
Sbjct: 283 DEDFALTMDDLRSTRPLKVNITRFSPRPGTPAACMENLPFRIKKERSRALTQLHHGITSE 342

Query: 420 YL-GMEGRVERIWITEIAADGIHLVR 444
           Y+    GR   + +TE    G  + R
Sbjct: 343 YMRDSAGRRLSVLVTEEGKPGTSVAR 368


>gi|298675805|ref|YP_003727555.1| MiaB-like tRNA modifying enzyme [Methanohalobium evestigatum
           Z-7303]
 gi|298288793|gb|ADI74759.1| MiaB-like tRNA modifying enzyme [Methanohalobium evestigatum
           Z-7303]
          Length = 433

 Score =  228 bits (580), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 127/383 (33%), Positives = 213/383 (55%), Gaps = 20/383 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +++ T+GC  +Q+ SE M   +   G+ L D  + AD+ + NTCTVK  ++  +   I +
Sbjct: 3   VHVATYGCPSSQAASEIMMDAIKRQGHELVD-EKSADVVVFNTCTVKYTTEQKILHKIGE 61

Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVE--ETLK-----GHEV 171
                  +VV+GC+P+   D  L   +   I+GV  I R+ EV++  E  K     G  +
Sbjct: 62  LGRKGLEVVVSGCMPEVQHDDILDNNQDAHILGVNSITRINEVLDSIENAKNKNNSGRRL 121

Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
            +   +    L+ P+ R N+ + I  I+ GC   C YC  + ARG L S+ ++S+V  VR
Sbjct: 122 EIFSSRPDDILNAPRTRFNQNIHICQISQGCNNRCAYCVVRTARGKLKSFDIDSIVEDVR 181

Query: 232 TVIADGVKEVWLSSEDTGAYG--RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
             +++G +E+W++S+D   YG  R  GV LP LL+ + +    +G+  +R+GM NP  + 
Sbjct: 182 KAVSEGCREIWITSQDNAQYGIDRQNGVLLPQLLDRVAS---IEGNFKIRVGMMNPFSVY 238

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
             L ++ +V  +  +Y FLH+P+QS S+ VL  MNR YT+S+   ++         + + 
Sbjct: 239 PILDDLLKVYENNKIYKFLHLPIQSASEKVLGYMNRNYTMSEVDEIITKFRSRFNDLTLV 298

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 409
           TDII GFPGET++DF ++++ +K Y+  +V+IS++ PRP T A   + + S +V +RS E
Sbjct: 299 TDIIVGFPGETEDDFYKSIDWVKNYRPDKVNISRYTPRPHTKALEYRNIDSRIVVRRSNE 358

Query: 410 LTSV-----FEAFTPYLGMEGRV 427
           L  V      E+    +G  G+V
Sbjct: 359 LHHVCDTVKLESKKEMVGWHGKV 381


>gi|374632057|ref|ZP_09704431.1| MiaB-like tRNA modifying enzyme [Metallosphaera yellowstonensis
           MK1]
 gi|373525887|gb|EHP70667.1| MiaB-like tRNA modifying enzyme [Metallosphaera yellowstonensis
           MK1]
          Length = 418

 Score =  228 bits (580), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 209/376 (55%), Gaps = 18/376 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y +T+GC+ N+ D+  M   L    + LT++   AD+ +INTCTV+  ++  M   I +
Sbjct: 3   VYFETYGCTLNKGDTLTMMSLLRERKHQLTNDISSADVIVINTCTVRMETEEKMKKRIKE 62

Query: 121 CKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
             S  K LVVAGC+      L        S++G Q ++ VV+ VE      + R++    
Sbjct: 63  LVSTGKKLVVAGCLAGAEPALVTSLAPSASLIGPQSLESVVKAVE-----GDSRVVEIGS 117

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
            P   LPKV     + ++PI  GC G C +C TK AR  L SY++ ++   V+  +  G 
Sbjct: 118 KPPTLLPKVHEG-LIAVIPIADGCAGHCNFCITKLARRILRSYSMRAIKEAVQESVRRGA 176

Query: 239 KEVWLSSEDTGAYGRDIGVNL--PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
           KE+ L+ +DT AYG D+G  +  P L+  I +    +G  M+R+GM  P   +  L EI 
Sbjct: 177 KEIELTGQDTAAYGLDLGGLVGLPDLVREISS---VEGDFMIRVGMMTPDLAMRRLDEII 233

Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           E   HP VY F H+PVQSG+D VL  M R+YT+ +F+ +V  +   +P   I TD+I G 
Sbjct: 234 EAWSHPKVYKFFHIPVQSGNDRVLRLMGRKYTVEEFKALVKEIRSRIPQSNITTDVIVGH 293

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 416
           PGE ++ F  T++L++E KF ++HI+ +  RP T ++ M +VP  V ++R +E  S++E 
Sbjct: 294 PGEDEDAFKDTLDLMRELKFERIHIAMYSLRPNTRSSMMPQVPGDVKRRRLKEAVSLYEE 353

Query: 417 FT-----PYLGMEGRV 427
            +      Y+G E RV
Sbjct: 354 LSLEVHKKYVGREMRV 369


>gi|383319340|ref|YP_005380181.1| MiaB-like tRNA modifying enzyme, archaeal-type [Methanocella
           conradii HZ254]
 gi|379320710|gb|AFC99662.1| MiaB-like tRNA modifying enzyme, archaeal-type [Methanocella
           conradii HZ254]
          Length = 407

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 209/392 (53%), Gaps = 25/392 (6%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++T+GC+ N  DS  M   + A G  + +  +EAD+ +INTC V  P+   M  L A 
Sbjct: 3   VYIETYGCTANMGDSHRMRSSIQAAGCCVAERPDEADVIIINTCAVTEPTSRGM--LKAI 60

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
            K   K ++VAGC+      L E  G  V   G           E  +K   +R +H K 
Sbjct: 61  KKYEDKRVIVAGCMAAAQPYLLEGLGGNVECAGAPG-------AEAAMKLLGIRPVHGKP 113

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
           L               I+ I  GC+G CTYC  + ARG L S    S+   V+  +  G 
Sbjct: 114 L---------LKGKTAIISIAEGCVGKCTYCIVRLARGTLRSAPPASIKKSVKDALEMGA 164

Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           KE++L+++DTGAYG DIG+ LP L++ +   L  +G   +R+GM NP  I + L ++  +
Sbjct: 165 KEIFLTAQDTGAYGIDIGIRLPKLMHDM---LGIEGDYRVRLGMMNPFSIADILDDVIRI 221

Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
            + P VY F H+P+QSGSD +L  M R YT S +  +V  L E +P + ++TD I GFP 
Sbjct: 222 FQDPHVYKFAHIPIQSGSDRILRLMGRPYTESQYSDMVRRLRECIPDITLSTDYIVGFPE 281

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 418
           ETD DF  T+  ++  K  +V+I++F PRPGT AA+M  +P A+ K+RSR LT +    T
Sbjct: 282 ETDGDFEMTMEDLRANKPLKVNITRFSPRPGTVAAKMDDLPMAIKKERSRALTRLHHEIT 341

Query: 419 -PYLGME-GRVERIWITEIAADGIHLVRLEQF 448
             Y+    GR   + +TE    G  + R + +
Sbjct: 342 SAYMRSSIGRRLSVLVTEEGKPGSSVARDDSY 373


>gi|308162206|gb|EFO64615.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia P15]
          Length = 525

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 144/433 (33%), Positives = 222/433 (51%), Gaps = 60/433 (13%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFG---------YALTDNSEEADIWLINTCTVKSPSQ 111
           + M T GC HN ++S+ +A  L   G         Y   +++++ D+  IN+CTVK+PS+
Sbjct: 26  VMMVTMGCGHNAAESDIIASALQTAGAVIIHSNGKYITPESAKDVDVLYINSCTVKNPSE 85

Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQG----SRDLKELEG---VSIVGV---QQIDRVVEV 161
                 + K       +V+ GCVPQ     S +L++      + I GV   Q +  +  +
Sbjct: 86  DKAFVHVQKGLEVGTVVVLGGCVPQSYGAMSDELRKASASKQLIISGVLTQQWLTALPGL 145

Query: 162 VEETLKGHEVRLLHRKKLPALDL--------------------------------PKVRR 189
           + E +  H +   H  + PAL +                                P  R 
Sbjct: 146 LREAIDFHILNTSHVLQ-PALRMTQPSSKAGVSAAISYVTKEATKDVDVEYLKCTPVHRA 204

Query: 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV-KEVWLSSEDT 248
           N  ++I+    GC+G+CTYCKT H+RG L S  +++L+ R+R  +AD V +E+WL+ EDT
Sbjct: 205 NPIIDIISTGSGCMGSCTYCKTCHSRGRLRSVPLDTLLTRIRNSLADPVIRELWLTGEDT 264

Query: 249 GAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNPPFILEHLKEIAEVLRHPCVYS 306
            A+GR+ G     LL  +   L  +  T  ML+IGMT+P  I+     +A  +    VY 
Sbjct: 265 LAWGRESGTTFAGLLQEVQKLLETENPTHKMLKIGMTDPDSIINQEDSLASFICCKYVYK 324

Query: 307 FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 366
           FLH+PVQSGSD +L+ M R Y +  F      L   VP + + TDIICGFPGETDED  Q
Sbjct: 325 FLHLPVQSGSDRILTLMRRHYDIETFLKSCSKLQSAVPDLCLDTDIICGFPGETDEDHAQ 384

Query: 367 TVNLIKEYK-----FPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYL 421
           ++NL +  K     F  V+I+Q+Y R  TPAA M++VP++  ++R++E++ V +      
Sbjct: 385 SLNLFRNLKEDAPRFQVVNITQYYARKNTPAASMEQVPASKKRERTKEMSEVVKNSFRRD 444

Query: 422 GMEGRVERIWITE 434
              G+V  I + E
Sbjct: 445 QYHGQVHDIMVLE 457


>gi|256811070|ref|YP_003128439.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus fervens AG86]
 gi|256794270|gb|ACV24939.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus fervens AG86]
          Length = 418

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 135/399 (33%), Positives = 218/399 (54%), Gaps = 24/399 (6%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++ +GC  N +D+E +   L   G+ L DN EEADI +INTC V+  +++ M   I +
Sbjct: 5   VYVEGYGCVLNTADTEIIKNSLKEAGFKLVDNLEEADIVVINTCVVRLETENRMIYRINE 64

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGH--------EVR 172
            K+  K +VVAGC+P+  ++  +++    +  ++  +  E++   ++ H        E+ 
Sbjct: 65  LKNLGKEVVVAGCLPKALKN--KVKDFLHIYPRESYKAGEILRYYIEKHYRMPYIEEEIN 122

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
               KKL  L      +   +  LPI  GCLG C+YC  K ARG L SY  E +V + + 
Sbjct: 123 KTLYKKLDYL------KPSLITPLPICEGCLGNCSYCIVKIARGKLISYPREKIVNKAKE 176

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
           +I  GVK ++++++DT  YG DIG NL  LLN +      +G  ++R+GM +   +   L
Sbjct: 177 LINKGVKCLFITAQDTACYGFDIGDNLANLLNDLTQ---IEGEFIMRVGMMHAKNVEPIL 233

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
            E+ E  ++  V  FLH+P+QSG D +L  MNR YT+ +F+ +VD     V  +   TDI
Sbjct: 234 DELIEAYQNEKVGKFLHLPLQSGDDEILKKMNRGYTVDEFKEIVDEFRRKVRNLCFTTDI 293

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
           I GFPGET+E F  T+ ++KE K   +H +++  R GT AA+MK+V + + K+RS  L  
Sbjct: 294 IVGFPGETEEQFQNTLEVLKELKPDYIHGAKYSQRKGTEAAKMKQVDTKIRKRRSEILDK 353

Query: 413 VFEAFT-----PYLGMEGRVERIWITEIAADGIHLVRLE 446
           +    +      Y+G   RV  +   +   D   +V+ E
Sbjct: 354 LRRELSYLNNKKYVGKTMRVLVLDEGKGYTDNFKVVKFE 392


>gi|307595884|ref|YP_003902201.1| MiaB family RNA modification enzyme [Vulcanisaeta distributa DSM
           14429]
 gi|307551085|gb|ADN51150.1| RNA modification enzyme, MiaB family [Vulcanisaeta distributa DSM
           14429]
          Length = 452

 Score =  224 bits (570), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 134/361 (37%), Positives = 206/361 (57%), Gaps = 19/361 (5%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           TFGC  N++DS+ M  +L + G+  T++ E AD  ++NTC V+  ++     L+ +    
Sbjct: 9   TFGCWLNKADSDIMITKLRSLGWEYTEDVESADTIIVNTCAVREEAERNELKLLKRLSEE 68

Query: 125 K--KPLVVAGCV----PQGSRDLK-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
              K L+VAGC+    P   +D+      +S  G + ID   EVV      H       K
Sbjct: 69  YPGKRLIVAGCLTRIRPATIKDVSPNAMLISSHGAELID---EVVSSNTDVHVYEDRPAK 125

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVI 234
            LP    P++  +++V  +PI VGCLG C++C TK  R   G + SY ++ +V  +   +
Sbjct: 126 YLPNY-YPELHGHRYV--VPIQVGCLGNCSFCVTKIGRMGFGRVKSYGIDDIVNAITNAV 182

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
           + G +E++L+ ++  AYGRD G +L  LL  I+A++  DG  M+R+GM  P  +   +  
Sbjct: 183 SKGAREIYLTGQEISAYGRDRGYDLADLLEKILAKV--DGRFMVRLGMMEPLELSRIIDR 240

Query: 295 IAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           + +V++    VY F HVPVQSGSD VL  M R+Y++  FR +V  +    P   +ATDII
Sbjct: 241 LLDVVKSDWRVYRFFHVPVQSGSDRVLMLMRRKYSVDLFRDIVKRIRNAFPDATVATDII 300

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
            GFPGETDEDF  +V LI+E    +V+++++  RP T AA M++VP  V K+RS+  T V
Sbjct: 301 VGFPGETDEDFWASVRLIEELGIDKVNLARYSRRPFTEAAYMEQVPEQVKKERSKIATDV 360

Query: 414 F 414
           F
Sbjct: 361 F 361


>gi|21228284|ref|NP_634206.1| hypothetical protein MM_2182 [Methanosarcina mazei Go1]
 gi|20906744|gb|AAM31878.1| hypothetical protein MM_2182 [Methanosarcina mazei Go1]
          Length = 435

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 216/394 (54%), Gaps = 22/394 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +Y+++FGCS +Q+ +E M   +   G+ L   +N+ +A++++ N+CTVK  ++  +   I
Sbjct: 3   VYLESFGCSASQASAEIMKASIGKLGHELLSPENAGQAEVYICNSCTVKYTTEQKILYKI 62

Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRV---VEVVEETLK----GH 169
                    ++V+GC+P+   +  L       I+GV  + R+   +  +E+  K    G 
Sbjct: 63  RSMGEKGVQVIVSGCMPEVQLEDILHANPEAHILGVNAVSRLGDLLSTIEQRKKTGIPGG 122

Query: 170 EVRLLHRKKLPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           E RL  R   P   L++P+ R N  + I  I+ GC  AC+YC  KHARG L S+  E ++
Sbjct: 123 E-RLEIRTSEPQGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGKLLSFPPEEII 181

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             +R+ +ADG +E+WL+S+D   YG D GV LP LL AI +E+P  G   +R+GM NP  
Sbjct: 182 EDIRSAVADGCREIWLTSQDDSQYGMDTGVKLPELLRAI-SEIP--GDFKVRVGMMNPFS 238

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           +L  L ++ +      ++  LH+P+QS S +VL  MNR + +     ++         + 
Sbjct: 239 VLPILDDLVDAFDSDKIFKLLHLPIQSASHSVLKKMNRLHKMDSVDEIITKFRAHFEDLS 298

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           + TDII GF  ETDEDF +T+  +K+Y+  +++IS++ PRP T A   + + S +  KRS
Sbjct: 299 LFTDIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKAFSFRNLDSRISVKRS 358

Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIA 436
            +L  V      E+    +G +GRV     TEI 
Sbjct: 359 HQLHKVCEQIKIESKNEMIGWKGRVFVSKYTEIG 392


>gi|221222491|sp|O29021.2|AMTAB_ARCFU RecName: Full=Probable threonylcarbamoyladenosine tRNA
           methylthiotransferase; AltName: Full=tRNA-t(6)A37
           methylthiotransferase
          Length = 424

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 135/399 (33%), Positives = 225/399 (56%), Gaps = 23/399 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           + ++T+GC+ NQ+DS+ M G LS  G     + E+A++ +IN+C V   ++  +   +  
Sbjct: 3   VAIETYGCTTNQADSDIMRGFLS--GEFELSSVEDAEVVIINSCGVIDFTERKIIRRMLD 60

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGH----EVRLLHR 176
            K   K +V+AGC+ + S++   +   S +    +D VV+ V   L G     E R + +
Sbjct: 61  LKREGKKVVLAGCLTRISKEALSVAD-SALSPDNLDMVVDAVYSALNGRKLFTERRFIDK 119

Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
            +   L   ++R N  + I+ I+ GCLG C++C TK ARG L S++++++V      +  
Sbjct: 120 AEFSHLKC-RLRENA-IAIVSISEGCLGKCSFCATKFARGRLRSFSMDAIVREAERAVRA 177

Query: 237 GVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
           G +E+ L+S+DTGAYG D G   LP LL  I +E+  +G   +R+GM NP   +  L E+
Sbjct: 178 GYREIQLTSQDTGAYGMDKGRAMLPELLRKI-SEI--EGEFRVRVGMMNPQHAVRMLDEL 234

Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
                   +Y FLH+PVQSG + +L  M R +T+ D+  VV+        + I+TDII G
Sbjct: 235 INAYSSEKIYKFLHIPVQSGDNRILEDMKRNHTVEDYVEVVEAFRNSFDDVLISTDIIVG 294

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
           FP ET+E F ++  LIKE +   V+I+++  R GTPAAR++ +P  + K+RSR+LT +  
Sbjct: 295 FPTETEEAFWKSYELIKETRPDIVNITRYSARKGTPAARLRDIPGWIKKERSRKLTDLMR 354

Query: 416 AFTPYLGME------GRVERIWITEIAADGIHLVRLEQF 448
                +G+E      G+  R+ +T+   +G +L R+  +
Sbjct: 355 K----IGLENNKRFVGKKLRVLVTKEGKNGRNLARMNSY 389


>gi|435850791|ref|YP_007312377.1| MiaB-like tRNA modifying enzyme [Methanomethylovorans hollandica
           DSM 15978]
 gi|433661421|gb|AGB48847.1| MiaB-like tRNA modifying enzyme [Methanomethylovorans hollandica
           DSM 15978]
          Length = 433

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 125/383 (32%), Positives = 213/383 (55%), Gaps = 20/383 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y+ TFGCS NQ+ +E M   + + G+ L  + + AD+ ++NTCTVK  ++  +   I +
Sbjct: 3   VYVSTFGCSANQASAEVMMATIRSLGHELV-SEKHADVVVLNTCTVKYSTEQKILHKIRE 61

Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVE---------ETLKGH 169
                  +VVAGC+P+   +  ++      I+GV  I R+ EV+          +T    
Sbjct: 62  LGEKGIEVVVAGCMPEVQLEDIIRNNPDAHILGVNSISRIGEVLNSIASPNLCSQTTSRQ 121

Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
            + +   +    +++P++R N  + I  ++ GC  AC+YC  +  RG L S+  +S+V  
Sbjct: 122 ALHVFSHEPEGFINVPRLRFNSNIHICQLSQGCNNACSYCIVRFVRGPLRSFHPDSIVED 181

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           +R  +A+G +E+WL+S+D   YG DIG+ LP LL  I  ++P  G   +R+GM NP  +L
Sbjct: 182 IRQGVAEGCREIWLTSQDNAQYGIDIGLRLPQLLERI-CDIP--GDFKVRVGMMNPFSVL 238

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
             L+E+     +  +Y  +H+PVQS S+ VL  MNR +++ +   V+++  +    + + 
Sbjct: 239 PILEELLHAFENDKIYKLVHLPVQSASNDVLKRMNRFHSIEEADLVINSFRDRFDDLTLF 298

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 409
           TDII GFPGE + DF  T+  +K+ K  +++IS++ PRP T A   + + S +V +RS E
Sbjct: 299 TDIIVGFPGENEADFVTTLEWVKKQKPEKINISRYTPRPHTKALEYRNIDSRIVVQRSNE 358

Query: 410 LTSVFEAFTP-----YLGMEGRV 427
           L +V E          +G +GRV
Sbjct: 359 LHAVCEEVKTGVRENMMGWQGRV 381


>gi|385806199|ref|YP_005842597.1| MiaB family RNA modification protein [Fervidicoccus fontis Kam940]
 gi|383796062|gb|AFH43145.1| RNA modification enzyme, MiaB family [Fervidicoccus fontis Kam940]
          Length = 425

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 128/360 (35%), Positives = 197/360 (54%), Gaps = 14/360 (3%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++KTFGC+ N+SDSE M   L + G+   DN E AD+ ++NTCTV+  S       I K 
Sbjct: 4   FIKTFGCALNRSDSELMREILISRGFEEIDNLENADVIIVNTCTVRKDSDQKAIEYIEKV 63

Query: 122 KSAKK--PLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
           K   K   +VVAGC+P     L         ++   + +R+V+ +      +E   L  +
Sbjct: 64  KQLNKNSKIVVAGCIPGSQPYLIKSRFPDAVLISPYETNRIVDAI-----FYETDFLGYE 118

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
           +    ++P V+    + I+P+N GCL  C +C TK AR  L S   + ++  ++ ++ +G
Sbjct: 119 EFKRYNVPIVKTGN-IAIVPLNDGCLSNCNFCITKVARRRLLSRMPKVILKAIKDLVENG 177

Query: 238 VKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
           V E+ LSS+D   YG D      LP L+  I  E+   G  MLRI M NP  + + L+  
Sbjct: 178 VYEIQLSSQDASVYGIDFKGRPLLPDLVETINQEIK--GEYMLRIAMMNPDGVKKDLENF 235

Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
            ++  +  V+ FLH+P+QSG D VL  M R+Y++ D   VV+     +  ++IATDII G
Sbjct: 236 VKIFEYEHVFKFLHLPIQSGDDEVLKIMGRDYSIEDALYVVNEFRSRIKDLRIATDIIVG 295

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
            PGE++E F  T+ ++    F +VHI+Q+ PRP T +ARM ++  +V KKRS  L    E
Sbjct: 296 HPGESEEAFENTLKVVVSGLFDRVHIAQYTPRPFTLSARMPQISDSVKKKRSSLLKEELE 355


>gi|452210718|ref|YP_007490832.1| 2-methylthioadenine synthetase [Methanosarcina mazei Tuc01]
 gi|452100620|gb|AGF97560.1| 2-methylthioadenine synthetase [Methanosarcina mazei Tuc01]
          Length = 458

 Score =  221 bits (562), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 217/394 (55%), Gaps = 22/394 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +Y+++FGCS +Q+ +E M   +   G+ L   +N+ +A++++ N+CTVK  ++  +   I
Sbjct: 3   VYLESFGCSASQASAEIMKASIRKLGHELLSPENAGQAEVYICNSCTVKYTTEQKILYKI 62

Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEV---VEETLK----GH 169
                    ++V+GC+P+   +  L       I+GV  + R+ ++   +E+  K    G 
Sbjct: 63  RSMGEKGVQVIVSGCMPEVQLEDILHANPEAHILGVNAVSRLGDLLFTIEQRKKTGIPGG 122

Query: 170 EVRLLHRKKLPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           E RL  R   P   L++P+ R N  + I  I+ GC  AC+YC  KHARG L S+  E ++
Sbjct: 123 E-RLEIRTSEPQGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGKLLSFPPEEIL 181

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             +R+ +ADG +E+WL+S+D   YG D GV LP LL AI +E+P  G   +R+GM NP  
Sbjct: 182 EDIRSAVADGCREIWLTSQDDSQYGMDTGVKLPELLRAI-SEIP--GDFKVRVGMMNPFS 238

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           +L  L ++ +      ++  LH+P+QS S +VL  MNR + +     ++         + 
Sbjct: 239 VLPILDDLVDAFDSDKIFKLLHLPIQSASHSVLKKMNRLHKMDSVNEIITKFRARFEDLS 298

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           + TDII GF  ETDEDF +T+  +K+Y+  +++IS++ PRP T A   + + S +  KRS
Sbjct: 299 LFTDIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKAFSFRNLDSRISVKRS 358

Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIA 436
            +L  V      E+    +G +GRV     TEI 
Sbjct: 359 HQLHKVCEQIKIESKNEMIGWKGRVFVSKYTEIG 392


>gi|386001450|ref|YP_005919749.1| MiaB-like tRNA modifying enzyme [Methanosaeta harundinacea 6Ac]
 gi|357209506|gb|AET64126.1| MiaB-like tRNA modifying enzyme [Methanosaeta harundinacea 6Ac]
          Length = 430

 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 138/399 (34%), Positives = 219/399 (54%), Gaps = 36/399 (9%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC+ N+ +SE  A  L   G+  + + EEAD+ ++NTC V   ++  +   +++
Sbjct: 22  FYIETYGCAANRGNSEAFASALVEAGHRRS-SQEEADLVIVNTCAVTERTERDIRRRLSE 80

Query: 121 CKSAKKPLVVAGC----VPQGSRDLKELEGVSIVGVQQIDRVVEVV--EETLKGHEVRLL 174
            +  +  L+VAGC    +P+  RDL+  E + I+      R+ E    E  L G      
Sbjct: 81  LQGER--LIVAGCLPSAIPEAVRDLRCREVLGILSAPSGRRIGEAFPPEPELAGS----- 133

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
                      ++ R+    ++ I+ GCLG+C+YC  + ARG L S TV+ +   VR  +
Sbjct: 134 ----------GRMTRD-LCAVVNISEGCLGSCSYCIVRRARGPLRSRTVQEVAEEVRRRL 182

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
            +G  EV L+S+D  AYG D+G +LP L++A VAE+  +G   +R+GM NP  +   L+E
Sbjct: 183 KEGAVEVQLASQDAAAYGLDLGSSLPELIDA-VAEI--EGDFRIRVGMMNPGQVKPILEE 239

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           +      P VY FLH+PVQSGS  VL +M R YT  DF ++   L    PG+ + TD+I 
Sbjct: 240 LIRSYDDPKVYKFLHLPVQSGSAEVLRSMRRGYTPQDFLSMAARLRAAFPGLTLYTDVIA 299

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           G PGE +EDF  T  LIK+ +  +V+++ +  RPGT A+R+K +PS + K RSR +T ++
Sbjct: 300 GHPGEREEDFAATEELIKKAEPDKVNVTMYSSRPGTEASRLKDMPSRLKKDRSRRMTRLW 359

Query: 415 EAFT-----PYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           +         YLG E   +   +TE+   G  + R   +
Sbjct: 360 KEIAGRRNGRYLGEEIIAQ---VTEMGRGGTVMARSANY 395


>gi|289192765|ref|YP_003458706.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus sp. FS406-22]
 gi|288939215|gb|ADC69970.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus sp. FS406-22]
          Length = 415

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/399 (32%), Positives = 220/399 (55%), Gaps = 24/399 (6%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++ +GC  N +D+E +   L   G+ +T++ EEA+I +INTC V+  +++ M   I +
Sbjct: 3   VYVEGYGCVLNTADTEIIKNSLREHGFEITEDLEEANIAIINTCVVRLETENRMIYRINE 62

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            K+  K +V+AGC+P+  ++  +++G   +  ++  R  E++++ ++ H     +R    
Sbjct: 63  LKNLGKEVVIAGCLPKALKE--KVKGFLHIYPREAHRAGEILKDYIEKH-----YRMPYI 115

Query: 181 ALDLPKVRRNKF-------VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
             D+ K    K        +  LPI  GC+G C+YC  K ARG+L SY  E +V + + +
Sbjct: 116 EEDINKTLYKKLDYLTPSLISPLPICEGCIGNCSYCIVKIARGNLISYPREKIVNKAKEL 175

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
           I  G K + ++++DT  YG DIG NL  LLN +      +G  ++R+GM +       L 
Sbjct: 176 INKGAKCLLITAQDTACYGFDIGDNLANLLNDLT---QIEGEFIMRVGMMHAKNAELILD 232

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           E+ EV +   V  FLH+P+QSG D +L  M R YT+ +F+ +V+     +  +   TDII
Sbjct: 233 ELIEVYKDDKVGKFLHLPLQSGDDEILKRMKRGYTVDEFKDIVNEFRRKIKNLCFTTDII 292

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
            GFPGET+E F  T+ ++KE K   +H +++  R GT AA+MK+V + + K+RS  L  +
Sbjct: 293 VGFPGETEEQFQNTLEVLKELKPDYIHGAKYSQRKGTEAAKMKQVDTKIRKQRSEILDKL 352

Query: 414 FEAFTPYLGME---GRVERIWITEIA---ADGIHLVRLE 446
               + YL  +   G+  R+ I +      D   +V+ E
Sbjct: 353 RRELS-YLNNKKYVGKTMRVLILDEGKGYTDNFKVVKFE 390


>gi|289596431|ref|YP_003483127.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum boonei T469]
 gi|289534218|gb|ADD08565.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum boonei T469]
          Length = 404

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 204/372 (54%), Gaps = 28/372 (7%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++ +GCS N +++  M GQ  A G  +    EEAD+ LI TC V   +++ M   I +
Sbjct: 3   VYLEAYGCSQNIAETN-MLGQ--AMG-EIVSRPEEADVILIGTCVVIEHTENRMLRRIEE 58

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            K   K +VV GC+P   ++L +++ V I   +      E+  E L       L R  + 
Sbjct: 59  LKRYGKKIVVYGCLPSARKELLDIDVVPIATWE-----FEMAGEILN------LDRSPMD 107

Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
            + +        V  +PI  GCLG CTYC T+ ARG + S + E ++  V+  +     E
Sbjct: 108 EVFIWDA-----VATIPIANGCLGQCTYCITRLARGRVKSRSKEWILRLVKKALEQRAVE 162

Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
           + +S++DT AYGRDIG  L  L+N+I A +P  G   LR+GM  P   L  L E+ +   
Sbjct: 163 IRISAQDTAAYGRDIGTELAELINSITA-IP--GKFYLRVGMMEPRETLRILPELIDAYS 219

Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
           +P VY FLH+PVQSG + +L  MNR Y + DF  +V    +  P M ++TDII GFPGE 
Sbjct: 220 NPKVYKFLHLPVQSGDNEILHRMNRGYKVEDFIKIVRNFRQRFPEMTLSTDIIVGFPGEN 279

Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-----FE 415
           DE F  T+ LIKE K   ++I++F PRP TPA + K+  +  VK+ S++L ++      +
Sbjct: 280 DESFENTMKLIKEIKPEILNITRFSPRPKTPAYKWKRPSTNKVKEWSQKLAALHMENMHK 339

Query: 416 AFTPYLGMEGRV 427
            F   LG E +V
Sbjct: 340 RFESMLGKEFKV 351


>gi|253742055|gb|EES98909.1| tRNA 2-methylthioadenosine synthase [Giardia intestinalis ATCC
           50581]
          Length = 525

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 140/433 (32%), Positives = 220/433 (50%), Gaps = 60/433 (13%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALT---------DNSEEADIWLINTCTVKSPSQ 111
           + M T GC HN ++S+ +A  L   G  +T         + +++ D+  I +CTVK+PS+
Sbjct: 26  VMMVTMGCGHNAAESDIIASALQTAGALITHSNGKYITPEGAKDVDVLYITSCTVKNPSE 85

Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQG----------SRDLKELEGVSIVGVQQIDRVVEV 161
                 + K   A   +V+ GCVPQ           +   K+L    ++  Q +  +  +
Sbjct: 86  DKAFVHVQKGLEAGVVVVLGGCVPQSYGAVNDELRRASASKQLIISGVLTQQWLADLPRL 145

Query: 162 VEETLKGHEVRLLHRKKLPALDL--------------------------------PKVRR 189
           + E +  H +   H  + PAL +                                P  R 
Sbjct: 146 LREAIDLHTLSDSHLLQ-PALRMTQPSDKIGVPAAISYVTKEATKDINVEYLKCTPIHRA 204

Query: 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV-KEVWLSSEDT 248
           N  ++I+    GC+G+CTYCKT H+RG L S  +++L+ R+R+ +AD V +E+WL+ EDT
Sbjct: 205 NPIIDIIATGSGCMGSCTYCKTCHSRGRLRSVPLDTLLARIRSSLADPVIRELWLTGEDT 264

Query: 249 GAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNPPFILEHLKEIAEVLRHPCVYS 306
            A+GRD G     LL  I   L  +  T  ML+IGMT+P  ++     +   ++   VY 
Sbjct: 265 LAWGRDSGTTFAALLQEIQKLLETENPTHKMLKIGMTDPDSVINQEDSLISFMQCKYVYK 324

Query: 307 FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 366
           FLH+PVQSGSD +L+ M R Y +  F      L   +P + + TDIICGFPGETDED  Q
Sbjct: 325 FLHLPVQSGSDRILTLMRRHYDIGTFLASCSKLQSAIPDLCLDTDIICGFPGETDEDHAQ 384

Query: 367 TVNLIKEY-----KFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYL 421
           ++NL +       +F  V+I+Q+Y R  TPAA M++VP++  ++R+RE++ V +      
Sbjct: 385 SLNLFRNLSKDAPRFQVVNITQYYARKNTPAASMEQVPASKKRERTREMSEVVKGSFRRD 444

Query: 422 GMEGRVERIWITE 434
              G+V  I + E
Sbjct: 445 QYHGQVHDIMVLE 457


>gi|147919729|ref|YP_686525.1| putative 2-methylthioadenine synthetase [Methanocella arvoryzae
           MRE50]
 gi|110621921|emb|CAJ37199.1| putative 2-methylthioadenine synthetase [Methanocella arvoryzae
           MRE50]
          Length = 404

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/365 (37%), Positives = 201/365 (55%), Gaps = 26/365 (7%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
           T  +Y++T+GC+ N++DS  +   + A G A+  + EEAD+ ++NTC V   + ++M  L
Sbjct: 2   TMRVYIETYGCTANEADSAGIRDAVLASGGAIASSPEEADVIVVNTCAVTGHTANSM--L 59

Query: 118 IAKCKSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
            A  +   K ++VAGC  V +  R LK  E V   G   +               VR L 
Sbjct: 60  RAVSRFPGKRVLVAGCLAVAEPGR-LKGYEFVDGPGSLPV---------------VRALG 103

Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
            +    L +    R   ++I     GC G C+YC  +  RG + S     +V   R  IA
Sbjct: 104 LRPEAGLSIAMTGRTATIKIAE---GCNGQCSYCIVRLVRGRIRSTPAPDIVEAARRAIA 160

Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
           +G  E++L+S+D+GAYG D GV LP L+ +I A LP  G+  +RIGM NP  I + L ++
Sbjct: 161 EGASELFLTSQDSGAYGLDTGVRLPTLIRSI-ASLP--GNFKVRIGMMNPFSIADILPDM 217

Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
            +VL HP VY F H+PVQSGSD +L  M R YT  ++  ++  L   VPG+  +TD I G
Sbjct: 218 VDVLNHPKVYRFAHIPVQSGSDRILKLMQRPYTEQEYSAIISRLRAGVPGITFSTDYIVG 277

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
           FP ET+ DF  T+  ++  +  +V+I++F PRPGTPAA M  V     K+RSR LT++  
Sbjct: 278 FPTETEADFRLTLEDLRTNRPLKVNITRFSPRPGTPAAAMPDVLERTKKERSRMLTALHH 337

Query: 416 AFTPY 420
             T +
Sbjct: 338 EVTSH 342


>gi|156938206|ref|YP_001436002.1| RNA modification protein [Ignicoccus hospitalis KIN4/I]
 gi|156567190|gb|ABU82595.1| RNA modification enzyme, MiaB family [Ignicoccus hospitalis KIN4/I]
          Length = 423

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 128/358 (35%), Positives = 196/358 (54%), Gaps = 9/358 (2%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY +T+GC+    ++E +  +L + GY +    EEAD  +I TCTV+S ++  M   I +
Sbjct: 3   IYYETYGCAVMLGEAERVLEELKSKGYEVVGRPEEADASIIFTCTVRSETEQRMAWRIKE 62

Query: 121 CKSAKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
              A K L+V GC+      L ++     SIV    +  +    E  LKG +  LL  ++
Sbjct: 63  LCKASKKLIVTGCLASAQPGLVKMVCPRASIVSNSSLHEI----ELALKGEKKYLLKGQR 118

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
            P   L  V    F  ++PI  GCLG CT+C TK AR  L S   +S++      +  G 
Sbjct: 119 -PRDWLKGVTPGGFRVVIPIADGCLGNCTFCITKVARPRLVSQRPDSIIEYALKGVKRGA 177

Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           KE+WL++ D  AYG++IG+ LP LL  ++  LP +    +R+GM +P    E +    +V
Sbjct: 178 KEIWLTAPDVAAYGKEIGLELPDLLEKLLKVLPEN--VYVRVGMMSPDTFREVMDRTIDV 235

Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
           +R P V+ F H+P+QS SD VL  M R YT S+F  +V+ + +      IATD++ GFPG
Sbjct: 236 MRDPRVFKFFHLPLQSASDKVLRLMGRRYTYSEFVEIVNKVRKAFNDPTIATDVMVGFPG 295

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 416
           E ++DF  T+  ++E  F +VH++ + PRP T  ARM +V   V  +R +   +V EA
Sbjct: 296 EEEDDFELTLKALRELAFERVHLAAYTPRPLTLGARMPQVREDVKSRRVKRAMNVIEA 353


>gi|159041572|ref|YP_001540824.1| RNA modification protein [Caldivirga maquilingensis IC-167]
 gi|157920407|gb|ABW01834.1| RNA modification enzyme, MiaB family [Caldivirga maquilingensis
           IC-167]
          Length = 422

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 125/360 (34%), Positives = 203/360 (56%), Gaps = 16/360 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T Y++T+GC  N++DS  M   L   GY   ++  +AD+ L+NTC V+  S+      I 
Sbjct: 3   TYYIETYGCWLNKADSALMEEDLRRMGYVKVNDPAQADLILVNTCAVREDSEIRELKAIE 62

Query: 120 KCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
           K     K L+VAGC+ +   S  ++      IV    ++ + E+++  +   E RL+ R 
Sbjct: 63  KYSRLGKKLIVAGCLTKARPSEIMRLAPDALIVNPSSVENLAELLKGGVNLTE-RLMVR- 120

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVI 234
                 +PK   +  V ++PI VGCLG C+YC  K+ RG +G   S  +  +   +   +
Sbjct: 121 ------IPKYYESSHVYVVPIQVGCLGNCSYCVIKYTRGGMGWVKSADLSVVKESIAKAV 174

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
           A G +E++L+ ++  AYG+D G +L  LL A++ ++  +G  ++R+GM  P  +   +  
Sbjct: 175 ARGAREIYLTGQEISAYGKDKGYDLVDLLEAVLRDV--EGRYLIRLGMLEPLELEGMIHR 232

Query: 295 IAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           + +V+++   +Y F H+PVQSGSD VL  M R+YT+  F+  V+ +        IATDII
Sbjct: 233 LIDVIKNDWRIYRFFHIPVQSGSDKVLRLMKRKYTVDLFKREVELIRRSFRNSFIATDII 292

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
            G PGE D DF ++V LI+E    +VH++++ PRP T AA M++VP  V K+RS  L+ V
Sbjct: 293 VGHPGEDDSDFQESVRLIRELGIDKVHVARYSPRPFTEAAYMRQVPDQVKKQRSSMLSKV 352


>gi|126465996|ref|YP_001041105.1| RNA modification protein [Staphylothermus marinus F1]
 gi|126014819|gb|ABN70197.1| RNA modification enzyme, MiaB family [Staphylothermus marinus F1]
          Length = 429

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 137/394 (34%), Positives = 215/394 (54%), Gaps = 37/394 (9%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY++T+GC+ N+ D   M   L + G+ L +   EAD  +INTCTV+  ++  M   I +
Sbjct: 5   IYIETYGCALNRGDEYIMKTVLVSRGHKLVEEITEADTIIINTCTVRYDTELKMIKRIKE 64

Query: 121 ----CKSAKKPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEE-----TLKGH 169
                    K L++AGC+ +    +  K     S+V  Q   ++   VE       LKG 
Sbjct: 65  LYRIASEQNKKLIIAGCMAKAQPYKIHKIAPKTSLVSPQNAPKIWIAVESDGQVFLLKGE 124

Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
             R +    +          +K +  LPI  GCLG C++C  K+AR  L SY +  +   
Sbjct: 125 RNRRILGTYV----------DKQIAYLPIQEGCLGNCSFCIVKNARRQLVSYPINKIKNT 174

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
           V+ ++  GV E+ ++ +DT +YG D+     LP LL  +       G+ M+RIGM NP  
Sbjct: 175 VKELVGKGVVEIEITGQDTASYGLDLYGKQMLPNLLEELDG---IKGNFMIRIGMMNPDT 231

Query: 288 ILEHLKEIAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
           +   L E+ EV+++   +Y FLH+P+QSGSD VL  M R+YT+ ++R +V  L + +P +
Sbjct: 232 LANILDELIEVIKNSAHIYRFLHIPLQSGSDKVLRIMRRKYTVDEYREIVKILRKKIPEI 291

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406
            IATDII G PGE +EDF QT+++IKE KF +VH + +  RP T +A ++++P++V K+R
Sbjct: 292 SIATDIIVGHPGEEEEDFEQTLDIIKELKFERVHPAVYSIRPNTYSASLRQIPTSVKKER 351

Query: 407 SRELTSVFEAFTPYLGME------GRVERIWITE 434
              L  + E     +G+E      G+V   +ITE
Sbjct: 352 MLRLLKIIEN----VGLEVHRKYLGKVLDTFITE 381


>gi|297527331|ref|YP_003669355.1| RNA modification enzyme, MiaB family [Staphylothermus hellenicus
           DSM 12710]
 gi|297256247|gb|ADI32456.1| RNA modification enzyme, MiaB family [Staphylothermus hellenicus
           DSM 12710]
          Length = 429

 Score =  218 bits (554), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 203/370 (54%), Gaps = 29/370 (7%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++T+GC+ N+ D   M   L + G+ L +   EAD  +INTCTV+  ++  M   I +
Sbjct: 5   VYIETYGCALNRGDEYIMKTVLVSRGHRLVNEIAEADTIIINTCTVRYDTELKMIKRIKE 64

Query: 121 ----CKSAKKPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEET-----LKGH 169
                    K L+VAGC+ +    +  K     S+V  Q   ++   VE       LKG 
Sbjct: 65  LYKIASEQNKKLIVAGCMAKAQPYKIHKIAPRASLVSPQNASKIWIAVESDKQVFLLKGE 124

Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
             R          ++     +K +  LPI  GCLG C++C  K+AR  L SY +  +   
Sbjct: 125 RDR----------NILGTHVDKQIAYLPIQEGCLGNCSFCIVKNARRQLVSYPINKIKNT 174

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 286
           V  ++  GV E+ L+ +DT +YG D+     LP LL     EL    G+ M+RIGM NP 
Sbjct: 175 VEELVGKGVVEIELTGQDTASYGLDLYGKQKLPHLLE----ELDRIKGNFMIRIGMMNPD 230

Query: 287 FILEHLKEIAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
            +   L E+ E++++   +Y FLH+P+QSGSD VL  M R+YT+ ++R ++ TL + +P 
Sbjct: 231 TLANILDELVEIIKYSAHIYRFLHIPLQSGSDKVLRVMKRKYTVDEYREIIKTLRKKIPE 290

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
           + IATDII G PGE +EDF QT+++IKE KF ++H + +  RP T +A +++VP++  K 
Sbjct: 291 ISIATDIIVGHPGEEEEDFEQTLSIIKELKFERIHPAVYSIRPNTYSASLRQVPTSDKKI 350

Query: 406 RSRELTSVFE 415
           R   L  + E
Sbjct: 351 RMLRLLKIIE 360


>gi|20090019|ref|NP_616094.1| 2-methylthioadenine synthetase [Methanosarcina acetivorans C2A]
 gi|19914987|gb|AAM04574.1| 2-methylthioadenine synthase [Methanosarcina acetivorans C2A]
          Length = 435

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/393 (32%), Positives = 209/393 (53%), Gaps = 20/393 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE--EADIWLINTCTVKSPSQSAMDTLI 118
           +Y+++FGCS + + +E M   +   G+ L + +   EA++++ N+CTVK  ++  +   I
Sbjct: 3   VYLESFGCSASLASAEIMKASVERLGHELLNPAAAGEAEVYICNSCTVKYTTEQKILYKI 62

Query: 119 AKCKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLK--------G 168
                    ++V+GC+P  Q    L       I+GV  I R+ E++    +        G
Sbjct: 63  RSMGEKGVQVIVSGCMPEVQLEEILHANPEAHILGVNAISRLGELLSSIEQRRMEGLPAG 122

Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             + L   + L  L++P+ R N  + I  I+ GC  AC+YC  KHARG L S+  E +V 
Sbjct: 123 GHLELRTSEPLGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGKLRSFPPEKIVK 182

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R+ +ADG +E+WL+S+D   YG D GV LP LL  +++E+P  G   +R+GM NP  +
Sbjct: 183 DIRSAVADGCREIWLTSQDDSQYGMDTGVKLPELLR-MISEIP--GDFKVRVGMMNPFSV 239

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           L  L  + +      V+  LH+P+QS S +VL  MNR + +     ++         + +
Sbjct: 240 LPILDGLVDAFDSDKVFKLLHLPIQSASHSVLKKMNRLHKMDAVDEIITKFRARFEDLSL 299

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
            TDII GF  ETDEDF +T+  +K+Y+  +++IS++ PRP T A   + + S +  +RS 
Sbjct: 300 FTDIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKAFSFRNLDSRISVQRSH 359

Query: 409 ELTSVFEAF-----TPYLGMEGRVERIWITEIA 436
           EL  V E          +G +GRV     TEI 
Sbjct: 360 ELHKVCEQIKLGSKQEMIGWKGRVFVSKYTEIG 392


>gi|327400612|ref|YP_004341451.1| MiaB family RNA modification protein [Archaeoglobus veneficus SNP6]
 gi|327316120|gb|AEA46736.1| RNA modification enzyme, MiaB family [Archaeoglobus veneficus SNP6]
          Length = 417

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 115/354 (32%), Positives = 206/354 (58%), Gaps = 7/354 (1%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           + ++T+GC+ NQ+DS+ +  ++S   + L+ + E+AD+ +IN+C V   ++  +     +
Sbjct: 3   VAIETYGCTMNQADSDIIRAEVSR-EFELS-SVEDADVVVINSCGVIDYTERKILNRARQ 60

Query: 121 CKSAKKPLVVAGCVPQ-GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
            +   K +V+AGC+P+   + + E+   +I     + R+ EV++  + G+++ LL + ++
Sbjct: 61  LRQMGKTVVMAGCLPRIAKKKVMEVANAAI-SPDNVHRIDEVIKAAVSGNKLFLLDKSEI 119

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
                 K R    + I+ I  GC G CT+C T+ ARG L S++ + +V  ++  +  G  
Sbjct: 120 DKTRCEKQRMAGGIAIVSIAEGCTGRCTFCATRFARGRLRSFSPDGIVEEIKKAVRAGYV 179

Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
           E+ L+S+DTGAYG DIG NLP LL  I A    +G   +R+GM NP      L ++    
Sbjct: 180 EIQLTSQDTGAYGHDIGTNLPDLLEKISA---IEGMFRVRVGMMNPRHAYSMLDDLLNAF 236

Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
               +Y FLH+PVQSG + VL  M R++ + ++  VV    +    + I+TDII GFP E
Sbjct: 237 ESEKIYKFLHLPVQSGDEKVLRDMGRDHGVEEYEEVVSAFRKRFDDVMISTDIIVGFPTE 296

Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           ++E F ++++L++  +   V+++++ PR GTPA R++ +P  + K RSR +T +
Sbjct: 297 SEEAFYKSLDLVRRTRPDLVNVTRYSPRKGTPAFRLRDMPDWIKKDRSRAVTRL 350


>gi|432328224|ref|YP_007246368.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum sp. MAR08-339]
 gi|432134933|gb|AGB04202.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum sp. MAR08-339]
          Length = 386

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 126/320 (39%), Positives = 183/320 (57%), Gaps = 19/320 (5%)

Query: 94  EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 153
           E+AD  +I TC V   +++ M   I + +   K +VV GC+P   R+L E +G+  +   
Sbjct: 14  EDADKIVIGTCVVIEHTENRMLRRIKELRRYGKDIVVYGCLPSARRELLE-DGLIPITTW 72

Query: 154 QIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKH 213
           + +R           HE  +L  +K P   + +V     V  +PI  GCLG CTYC TK 
Sbjct: 73  EFER----------AHE--MLDLRKSP---MDQVFLWDAVATIPIANGCLGKCTYCITKI 117

Query: 214 ARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273
           ARGH+ S  VE ++ RV+  +  G  E+ LS++DT AYGRDIG NL  L+N I +    D
Sbjct: 118 ARGHIKSRPVEWIISRVKDALNMGAVEIRLSAQDTAAYGRDIGTNLAELVNLITS---LD 174

Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 333
           G   +RIGM  P   LE + E+ E  +   VY FLH+PVQSG D +L  MNR YT  DF 
Sbjct: 175 GRFYVRIGMMEPRETLEIIDELIESYKSSKVYKFLHIPVQSGDDRILRRMNRGYTAEDFE 234

Query: 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393
            ++    + +P + I+TD+I GFPGETDE F  T+++I+  K   ++I++F PRP TPA 
Sbjct: 235 RIIGEFRKKIPDITISTDVIVGFPGETDETFANTLDMIQRLKPDILNITRFSPRPKTPAY 294

Query: 394 RMKKVPSAVVKKRSRELTSV 413
             K+  +  VK+ S+ +T +
Sbjct: 295 GWKRPSTNKVKEWSQRVTDL 314


>gi|118431496|ref|NP_148004.2| MiaB-like protein [Aeropyrum pernix K1]
 gi|116062821|dbj|BAA80529.2| MiaB homolog [Aeropyrum pernix K1]
          Length = 450

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/388 (33%), Positives = 210/388 (54%), Gaps = 17/388 (4%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
           + T Y++ +GCS ++ D+  MA +L   GY      E+AD+ L+NTC V+  ++  +   
Sbjct: 17  SRTYYLEVYGCSLSEFDALIMASRLEEAGYRRVARPEDADVILVNTCAVRLDTEQRIAER 76

Query: 118 IAKCKSA--KKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
           + K +     +  VVAGC+ +    L  + +   S++  Q ++RV++ V+    G  + +
Sbjct: 77  LEKLRLQLPDRKYVVAGCLVKARPGLVARLVPEASLLAPQAVERVLDAVDALESGRRLVV 136

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
           L  ++     +P++     V  + I  GCLG C++C TK AR  + SY+   +V RVR  
Sbjct: 137 LDGRR-DTRSMPQLPITDAVVTVMIQEGCLGDCSFCITKVARRQVRSYSPRVIVERVREA 195

Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
           +  G +E+ L+  D   YG D+    NL  L+ AI+ ++  +G   +R+GM  P  +  +
Sbjct: 196 VEKGAREIRLTGTDVAVYGVDLPGKPNLADLVAAILEKV--EGDYRIRVGMMTPDQVEPY 253

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           L  + +V R   VY + H+PVQSG D VL  M R YT+S+++ +   +    P   IATD
Sbjct: 254 LDSLLDVYRDERVYKYFHLPVQSGDDEVLKIMKRNYTVSEYKAIHRRIKSRFPDAMIATD 313

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
           II G PGET E F  TV L++E +F +VH++Q+  RP T AA M++VP +V K+RSR L 
Sbjct: 314 IIVGHPGETWEAFWNTVRLVEELRFEKVHLAQYSLRPHTEAASMEQVPDSVKKERSRILG 373

Query: 412 SV-----FEAFTPYLGMEGRV---ERIW 431
            +      E    Y+G   R    ER W
Sbjct: 374 KIVAEIGLEINGSYVGRRVRALVTERSW 401


>gi|332797846|ref|YP_004459346.1| MiaB family RNA modification protein [Acidianus hospitalis W1]
 gi|332695581|gb|AEE95048.1| RNA modification enzyme, MiaB family [Acidianus hospitalis W1]
          Length = 417

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/359 (35%), Positives = 204/359 (56%), Gaps = 14/359 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y +T+GC+ N+ D+  M   L    + + +N  EAD+ ++NTC V+  +   M + I +
Sbjct: 3   VYFETYGCALNKGDTYIMMTLLKQRNHEIVNNPNEADVIVLNTCDVRLETGERMKSRIKE 62

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
            +   K LVVAGC       + +      SI+G Q + ++++ VE    G ++  ++ ++
Sbjct: 63  LRKFGKKLVVAGCFSGAEPGVVKTLAPEASIIGPQALTKIIDAVE----GEKIFSINAER 118

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
                 P+V   K + I+PI  GC G C++C TK AR  L SY++ S+V  V+  + +G 
Sbjct: 119 SEIT--PRVFEGK-IAIIPIADGCAGDCSFCITKLARRTLRSYSMRSIVEAVKEAVKNGA 175

Query: 239 KEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
            EV L+ +D  AYG D+G  + L  LLN +   L  +G  M+RIGM  P      +  I 
Sbjct: 176 VEVELTGQDAAAYGLDLGGKIKLSDLLNEV---LSIEGDFMIRIGMMTPEQFARDIDGIL 232

Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           E +R+P ++ FLH+PVQSG D VL  MNR+YT+ +++ +V      +P + I TDII G 
Sbjct: 233 EAMRNPKLFKFLHLPVQSGDDNVLKLMNRKYTVDEYKELVKEARSKIPNINITTDIIIGH 292

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
           PGE +  F  T+ L+KE KF +VH++ +  RP T +A MK+VP +V K+R R    ++E
Sbjct: 293 PGEDENAFENTLELMKEIKFERVHLAMYSIRPNTRSALMKQVPDSVKKERMRIAYKLYE 351


>gi|15669058|ref|NP_247862.1| hypothetical protein MJ_0867 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2501543|sp|Q58277.1|AMTAB_METJA RecName: Full=Probable threonylcarbamoyladenosine tRNA
           methylthiotransferase; AltName: Full=tRNA-t(6)A37
           methylthiotransferase
 gi|1591550|gb|AAB98872.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 427

 Score =  215 bits (548), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 120/360 (33%), Positives = 202/360 (56%), Gaps = 17/360 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++ +GC  N +D+E +   L   G+ + +N EEADI +INTC V+  +++ M   I +
Sbjct: 14  VYVEGYGCVLNTADTEIIKNSLKKHGFEVVNNLEEADIAIINTCVVRLETENRMIYRINE 73

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            K+  K +VVAGC+P+  ++  +++G   +  ++  +  E+++  ++ H     +R    
Sbjct: 74  LKNLGKEVVVAGCLPKALKN--KVKGFLHIYPREAHKAGEILKNYVEKH-----YRMPYI 126

Query: 181 ALDLPKVRRNKF-------VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
             D+ K    K        +  LPI  GC+G C+YC  K ARG L SY  E +V + + +
Sbjct: 127 EEDINKTLYKKLDYLKPSLITPLPICEGCIGNCSYCIVKIARGGLISYPREKIVNKAKEL 186

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
           I  G K + ++++DT  YG DIG NL  LLN +       G  ++R+GM +       L 
Sbjct: 187 INKGAKCLLITAQDTACYGFDIGDNLANLLNELT---QIKGEFIMRVGMMHAKNAELILD 243

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           E+ EV ++  V  FLH+P+QSG D +L  M R YT+ +F+ +V+     +  +   TDII
Sbjct: 244 ELIEVYQNEKVGKFLHLPLQSGDDEILKRMKRGYTVDEFKDIVNEFRRKIKNLCFTTDII 303

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
            GFPGET+E F  T+ +++E K   +H +++  R GT AA+MK++ + + K+RS  L  +
Sbjct: 304 VGFPGETEEQFQNTLEVLRELKPDYIHGAKYSQRKGTEAAKMKQIDTKIRKRRSEILDKL 363


>gi|261403097|ref|YP_003247321.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus vulcanius M7]
 gi|261370090|gb|ACX72839.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus vulcanius M7]
          Length = 414

 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 121/354 (34%), Positives = 203/354 (57%), Gaps = 7/354 (1%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++ +GC  N +D+E +   L   G+ + D  + AD+ +INTC V+  +++ M   I +
Sbjct: 4   VYVEGYGCVLNSADTEIIKNALREEGFEIVDELDRADVAVINTCVVRLETENRMIYRINE 63

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLK-GHEVRLLHRKKL 179
            K+  K +VVAGC+P+  ++  +++G   +  ++  +  ++++  +K G  V  L   K 
Sbjct: 64  LKNLGKDVVVAGCLPKALKE--KVKGFLHIYPREAHKAGKILKIYIKSGKRVEGLEDDKS 121

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
               L  +  +  +  LPI  GCLG CTYC  K ARG+L SY  E +V +   +I  G K
Sbjct: 122 LHKKLDYITSS-LITPLPICEGCLGHCTYCIVKIARGNLISYPREKIVKKAEELIKKGTK 180

Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
            ++++++DT  YG D   NL  LLN +      +G  ++R+GM +   + E + E+ EV 
Sbjct: 181 CIFITAQDTACYGFDRNDNLANLLNDLC---NIEGDFIMRVGMMHAKNVEEIIDELIEVY 237

Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
           +   V  FLH+P+QSG D +L  M R YT+ +F+ +V+   + V  +   TDII GFPGE
Sbjct: 238 KTDKVGKFLHLPLQSGDDEILKKMRRGYTVDEFKEIVNEFRKKVKNLCFTTDIIVGFPGE 297

Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           T+E F  T+N++KE K   +H +++  R GT AA+MK+V + + K+RS  L  +
Sbjct: 298 TEEQFENTLNILKELKPDYIHGAKYSQRKGTEAAKMKQVDTKIRKQRSEILDKL 351


>gi|389860714|ref|YP_006362954.1| MiaB family RNA modification protein [Thermogladius cellulolyticus
           1633]
 gi|388525618|gb|AFK50816.1| RNA modification enzyme, MiaB family [Thermogladius cellulolyticus
           1633]
          Length = 425

 Score =  214 bits (545), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 199/363 (54%), Gaps = 16/363 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++T+GC+ N+SD   M   L+  G+ + D+   AD  +INTCTV+  ++  M   IA+
Sbjct: 3   VYLETYGCALNKSDEALMKRVLTDRGHGIVDDPTSADALVINTCTVRLDTEYRMARRIAE 62

Query: 121 ----CKSAKKPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
                K + K LVVAGC+ +    +  K     SIV  Q  D++   VE        R++
Sbjct: 63  LYRLAKESGKKLVVAGCLAKAQPYKVAKLAPDASIVSPQNADKIYLAVESN-----SRVV 117

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
               L +     V     +  +P   GCLG CT+C  KHAR  L S+ +E +   V   +
Sbjct: 118 LLTGLRSRGSIGVFLTGRIAPIPAQEGCLGNCTFCIVKHARRVLVSHPIEDVKKAVEEAV 177

Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
             G  E+ L+  D G YG D+     LP L+ + VAE+  +G  M+R+GM NP  +   L
Sbjct: 178 RLGAVEIELTGMDLGTYGIDLYKTRKLPELIES-VAEV--EGDFMVRVGMLNPEHLSYIL 234

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
            ++ E L+H  VY FLH+P+QSGS+ +L  M R+YT+ ++   V+ L   +PG+ IATDI
Sbjct: 235 DDLVEALQHRKVYKFLHIPLQSGSNRILKLMGRKYTVEEYIDYVEELKSKIPGISIATDI 294

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
           + GFP ETDEDF  TV +IK+ +F +VH++ +  RP T A  + ++P+   K R  +   
Sbjct: 295 LVGFPHETDEDFQDTVEVIKKLRFERVHLAAYSIRPRTLATSLPQIPTQTKKSRVLQALR 354

Query: 413 VFE 415
           V E
Sbjct: 355 VIE 357


>gi|325967748|ref|YP_004243940.1| MiaB family RNA modification protein [Vulcanisaeta moutnovskia
           768-28]
 gi|323706951|gb|ADY00438.1| RNA modification enzyme, MiaB family [Vulcanisaeta moutnovskia
           768-28]
          Length = 452

 Score =  214 bits (544), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 210/375 (56%), Gaps = 22/375 (5%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           TFGC  N++DS+ +  +L + G+  T++ + AD  +INTC V+  ++     L+ K    
Sbjct: 9   TFGCWLNKADSDIVITRLRSLGWEYTEDIKSADTIIINTCAVREEAERNELKLLRKLSEE 68

Query: 125 --KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR----KK 178
              K L+V GC+ +    +  ++  +   V       E ++E + G     ++     K 
Sbjct: 69  YLNKRLIVTGCLTRVRPAM--IKDAAPNAVLVTSHGAEFIDEVVNGRNDIYVYEDRPMKY 126

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVIA 235
           LP+   P+   +++V  +PI VGCLG C++C TK  R   G + SY +  +   V   ++
Sbjct: 127 LPSY-YPEFHGHRYV--VPIQVGCLGNCSFCVTKVGRMGFGKVRSYEMSDITNAVANAVS 183

Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
            G +E++L+ ++  AYGRD G +L  LL  I+ ++  DG  M+R+GM  P  +   +  +
Sbjct: 184 RGAREIYLTGQEISAYGRDRGYDLADLLENILGKV--DGRFMIRLGMMEPLELSRVIDRL 241

Query: 296 AEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
            ++++    VY F H+PVQSGSD +L+ M R+Y++S F+ +V  +  + P   I TDII 
Sbjct: 242 LDIVKSDWRVYRFFHIPVQSGSDRILTLMKRKYSVSLFKDIVTRIRRVFPDATIVTDIIV 301

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           GFPGETDEDF  +V LI+E    +V+++++  RP T AA M++VP  + K+RS+  T +F
Sbjct: 302 GFPGETDEDFWASVRLIEELSIDKVNLARYSRRPFTEAAYMEQVPEQIKKERSKVATEIF 361

Query: 415 -----EAFTPYLGME 424
                E   P++G E
Sbjct: 362 NKVALERNKPFIGKE 376


>gi|52549017|gb|AAU82866.1| conserved hypothetical protein [uncultured archaeon GZfos21B5]
          Length = 430

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 203/386 (52%), Gaps = 28/386 (7%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
           GT  ++++TFGC+ N  D+  M   L   G+ + + SE ADI ++NTCTV   ++  +  
Sbjct: 9   GTAKVFIETFGCTANTGDTMEMRAILRNAGHEIVEESE-ADIVIVNTCTVTKRTELNVIK 67

Query: 117 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
            + + K   K +VVAGC+     +L +    SI+G    D V  V    ++  E +    
Sbjct: 68  RLNELKERGKAVVVAGCMAAAQPELVK----SILG----DGVAMVTPRDIQASEKQ---- 115

Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
                LD   V     + ++ I  GC+G CTYC  K ARG L SY  E +   V++ +  
Sbjct: 116 ----RLDFDGV-----IAVITIAQGCIGKCTYCIVKQARGKLKSYKSEKICEAVKSAVES 166

Query: 237 GVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
           G  E+ ++S+D+ AYG     + LP LL  I +    +G   +R+GM NP  ++  L E+
Sbjct: 167 GANEIRITSQDSSAYGWSSTDIKLPALLEQITS---VEGDFRIRVGMMNPFTLMPILDEL 223

Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
            E      ++ F HVPVQSGSD VL  M R Y ++DF  +V  +        I+TD I G
Sbjct: 224 LEAFNTEKIFKFFHVPVQSGSDRVLREMKRNYKVADFVEIVTNIRARFRQSTISTDFIIG 283

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
           FP ET+EDF  ++NL++E K  +V+I++F PRPGT A+++  +     K+RSR  ++V+ 
Sbjct: 284 FPTETEEDFFASLNLMEEIKPEKVNITRFSPRPGTEASKLTDLLEREKKRRSRIFSTVYH 343

Query: 416 --AFTPYLGMEGRVERIWITEIAADG 439
              F     +EG    + +TE    G
Sbjct: 344 NIVFAKNKELEGAELPVLVTETGKKG 369


>gi|374635310|ref|ZP_09706912.1| MiaB-like tRNA modifying enzyme [Methanotorris formicicus Mc-S-70]
 gi|373562898|gb|EHP89103.1| MiaB-like tRNA modifying enzyme [Methanotorris formicicus Mc-S-70]
          Length = 417

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 126/383 (32%), Positives = 213/383 (55%), Gaps = 22/383 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY++ +GC+ N +D+  +   L  F + +TDN E+AD+ +INTC V+  +++ M   I  
Sbjct: 8   IYVEGYGCTLNIADTNIIENSLKEFNFEITDNVEDADLVIINTCVVRLETENRMFARINY 67

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKG---HEVRLLHRK 177
            KS  K +VVAGC+ +  +  K++E ++       D ++   E  L G   HE  +   K
Sbjct: 68  FKSLDKKVVVAGCLAKALK--KKVENLA-------DLLIMPREAHLSGEIIHEHFVEKNK 118

Query: 178 KLPALDLPKVRRN---KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
           K   ++L +  +      +  LPI  GC+G C+YC  K ARG L SY+ E +V +   +I
Sbjct: 119 KENTINLEEKLKYISPSLITPLPICEGCIGECSYCIVKVARGRLISYSREKIVKKAEELI 178

Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
             G K + ++++DT  YG DI  NLP L+N + +    +G  ++RIGM +   + + L +
Sbjct: 179 NSGTKCLLITAQDTACYGFDINDNLPNLINDLCS---INGEFIMRIGMMHAKNVGDILDD 235

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           + E  +   V   LH+P+QSG D VL AM R YT+ +F ++V+   + +  +   TDII 
Sbjct: 236 LIEAYKDEKVAKLLHLPLQSGDDGVLKAMKRGYTVDEFISIVNEFRKKIEDLTFVTDIIV 295

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           GFP ET+E F  T+ ++++ K   +H +++  R  T AARMK++ + + K+RS  L  + 
Sbjct: 296 GFPTETEEAFENTLEVLRKIKPDYIHGAKYTSRKYTEAARMKQIDTKIRKRRSEILDKLR 355

Query: 415 EAFTPYLGME---GRVERIWITE 434
              + Y+  +   G+  ++ ITE
Sbjct: 356 RELS-YMNNKKYVGKKMKVLITE 377


>gi|449066971|ref|YP_007434053.1| hypothetical protein SacN8_04670 [Sulfolobus acidocaldarius N8]
 gi|449035479|gb|AGE70905.1| hypothetical protein SacN8_04670 [Sulfolobus acidocaldarius N8]
          Length = 402

 Score =  211 bits (538), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 130/344 (37%), Positives = 193/344 (56%), Gaps = 12/344 (3%)

Query: 78  MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK-KPLVVAGCVPQ 136
           M   L   G+ + DN ++A+I +INTC V+  ++  M   I + K    K LVVAGC+  
Sbjct: 1   MMTLLRDKGHEIVDNIQDAEILVINTCAVRLETEERMKQRIKELKKYNDKRLVVAGCLAS 60

Query: 137 G--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVE 194
              +  +      S++G Q + ++V+VVE + K  +V L   K L     PKV   K + 
Sbjct: 61  AEPAVVVSLAPEASVIGPQSVQKIVDVVENS-KQRQVYLNEDKPLIT---PKVFDGK-IA 115

Query: 195 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 254
           ILPI  GC G C +C TK AR  L SY    +V  VR  +  G  E+ LS +DT AYG D
Sbjct: 116 ILPIADGCAGDCNFCITKLARRKLRSYPPHLIVESVRDAVRKGAVEIELSGQDTAAYGLD 175

Query: 255 IGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
           +G    I L+ +V ++   +G  M+RIGM  P   +  +  I EVLR   VY F+H+PVQ
Sbjct: 176 LG---QIKLSDLVRKVTEVEGDFMIRIGMMTPEQAMRDIDGIIEVLRETKVYKFIHLPVQ 232

Query: 314 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373
           SG D VL  MNR+YT+ +++ +V  + + VP + I TDII G PGE +  F  T+ L+++
Sbjct: 233 SGDDNVLKLMNRKYTVDEYKDLVKEIRKKVPIVNITTDIIIGHPGEDENAFRNTLELMRD 292

Query: 374 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 417
            KF ++H++ +  RP T +A MK+VP  V K+R +    ++E  
Sbjct: 293 IKFERIHLAMYSIRPNTRSASMKQVPDPVKKERIQIANKLYEEL 336


>gi|91773329|ref|YP_566021.1| MiaB-like tRNA modifying enzyme [Methanococcoides burtonii DSM
           6242]
 gi|91712344|gb|ABE52271.1| Radical SAM family protein with UPF0004 and MiaB-like domains
           [Methanococcoides burtonii DSM 6242]
          Length = 430

 Score =  211 bits (538), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 127/358 (35%), Positives = 196/358 (54%), Gaps = 12/358 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +++ T+GCS NQ+ SE M   +   GY L D  + A++ +INTCTVK  ++  +   I  
Sbjct: 3   VHITTYGCSANQASSEIMIASVRDLGYELVDEMD-AEVVVINTCTVKYTTEQKILHKIED 61

Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEV---VEETLK---GHEVR 172
             +    +VV GC+PQ   +  L+      I+GV  I ++ +V   +E + K      V 
Sbjct: 62  LGAKGIDVVVTGCMPQVQLETILERNPDAHILGVNSIAKIGQVLRSIENSCKVGSRERVE 121

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           L+  +    L     R N  + I  I+ GC  +C YC    ARG L S+  +S+V  +R 
Sbjct: 122 LITSEPEGFLKTAHSRFNPNIHICQISQGCDYSCAYCIVTIARGKLRSFDADSIVEDIRM 181

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
            + +G +E+WL+S+D G YG D  V LP LL  IVA +P  G   +R+GM NP  +   L
Sbjct: 182 AVDEGCREIWLTSQDNGQYGTDRDVLLPELLRRIVA-IP--GDFKIRVGMMNPFSVTPIL 238

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
            ++ EV R   +Y  +H+P+QS SD VL  MNR +++ +   +V  L E  P + + TDI
Sbjct: 239 DDLIEVFRSDKIYKIVHLPIQSASDNVLKKMNRYHSIEEANGIVFRLREAFPDLTLFTDI 298

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 410
           I GF  E+D DFN T+  +K  K  +V+IS++ PRP T A   + + + +V +RS +L
Sbjct: 299 IVGFSSESDNDFNMTLEWVKTMKPDKVNISRYTPRPLTKALEYRNLDTRIVVERSNKL 356


>gi|254167353|ref|ZP_04874205.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
           boonei T469]
 gi|197623616|gb|EDY36179.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
           boonei T469]
          Length = 386

 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 134/355 (37%), Positives = 193/355 (54%), Gaps = 27/355 (7%)

Query: 78  MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137
           M GQ  A G  +    EEAD+ LI TC V   +++ M   I + K   K +VV GC+P  
Sbjct: 1   MLGQ--AMG-EIVSRPEEADVILIGTCVVIEHTENRMLRRIKELKQYGKKIVVYGCLPSA 57

Query: 138 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILP 197
            ++L +++ V I   +      E+  E L       L R  +  + +        V  +P
Sbjct: 58  RKELLDMDVVPIATWE-----FEMAGEILN------LDRSPMDEVFIWDA-----VATIP 101

Query: 198 INVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV 257
           I  GCLG CTYC T+ ARG + S + + ++  V+  +  G  E+ +S++DT AYGRDIG 
Sbjct: 102 IANGCLGQCTYCITRLARGRVKSRSKDWILRLVKKALEQGAVEIRISAQDTAAYGRDIGT 161

Query: 258 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317
            L  L+N+I A +P  G   LR+GM  P   L  L E+ +   +P VY FLH+PVQSG D
Sbjct: 162 ELAELINSITA-IP--GKFYLRVGMMEPRETLRILPELIDAYSNPKVYKFLHLPVQSGDD 218

Query: 318 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377
            +L  MNR Y + DF  +V    +  P M ++TDII GFPGE DE F  T+ LIKE K  
Sbjct: 219 EILHRMNRGYKVEDFIKIVRNFRQRFPEMTLSTDIIVGFPGENDESFENTMKLIKEIKPE 278

Query: 378 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-----FEAFTPYLGMEGRV 427
            ++I++F PRP TPA + K+  +  VK  S++LT++      + F   LG E +V
Sbjct: 279 ILNITRFSPRPKTPAYKWKRPSTNKVKGWSQKLTALHMENMHKRFESMLGKEFKV 333


>gi|116753688|ref|YP_842806.1| MiaB-like tRNA modifying enzyme [Methanosaeta thermophila PT]
 gi|116665139|gb|ABK14166.1| MiaB-like tRNA modifying enzyme [Methanosaeta thermophila PT]
          Length = 411

 Score =  211 bits (537), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 203/353 (57%), Gaps = 18/353 (5%)

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
           ++T+GC+ N  +S  + G L A G+  +D  + +++ ++NTC V S ++  M   I + K
Sbjct: 5   IETYGCTSNTGNSMELRGALIAHGHQESD-LDGSEVVILNTCAVTSRTERNMLRRIGELK 63

Query: 123 SAKKPLVVAGCVPQGSRDLKE-LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
             +  L+VAGC+P    +L E +E V ++    IDRV++ +  +   H    L    LP 
Sbjct: 64  GRR--LIVAGCLPAAIPELIESVECVGVLNRWGIDRVLDALGRS--EHPTSELSASCLPG 119

Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 241
                        ++ I+ GCLGAC YC  K ARG L S     +   V  +I+ G  E+
Sbjct: 120 ---------SLCGVVNISEGCLGACAYCIVKRARGTLRSREPHEIEKDVMRLISSGAVEI 170

Query: 242 WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 301
            L+S+D GAYG DIG +LP LL+ +++++  DG+ M+R+GM NP  +L+ L ++ +  ++
Sbjct: 171 QLTSQDAGAYGCDIGASLPELLD-LLSDI--DGAFMIRVGMMNPNSVLKILDDLLDSYKN 227

Query: 302 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 361
             +Y F+H+P+QSGSD VL  M R YT  DF  VV       P + + TD+I GFPGE+D
Sbjct: 228 EKIYRFIHLPLQSGSDRVLERMRRGYTSDDFVNVVSAFRSRYPEISLTTDVITGFPGESD 287

Query: 362 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           +DF  T ++I+  +  +V++++F  RP T A  M  +P  + K+RSR +T ++
Sbjct: 288 QDFRMTEDVIRITQPDKVNVTRFSRRPHTLAFMMHDMPDRIKKERSRRVTELW 340


>gi|449069243|ref|YP_007436324.1| hypothetical protein SacRon12I_04660 [Sulfolobus acidocaldarius
           Ron12/I]
 gi|449037751|gb|AGE73176.1| hypothetical protein SacRon12I_04660 [Sulfolobus acidocaldarius
           Ron12/I]
          Length = 401

 Score =  211 bits (537), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 128/336 (38%), Positives = 191/336 (56%), Gaps = 12/336 (3%)

Query: 86  GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK-KPLVVAGCVPQG--SRDLK 142
           G+ + DN ++A+I +INTC V+  ++  M   I + K    K LVVAGC+     +  + 
Sbjct: 8   GHEIVDNIQDAEILVINTCAVRLETEERMKQRIKELKKYNDKRLVVAGCLASAEPAVVVS 67

Query: 143 ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGC 202
                S++G Q + ++V+VVE + K  +V L   K L     PKV   K + ILPI  GC
Sbjct: 68  LAPEASVIGPQSVQKIVDVVENS-KQRQVYLNEDKPLIT---PKVFDGK-IAILPIADGC 122

Query: 203 LGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL 262
            G C +C TK AR  L SY    +V  VR  +  G  E+ LS +DT AYG D+G    I 
Sbjct: 123 AGDCNFCITKLARRKLRSYPPHLIVESVRDAVRKGAVEIELSGQDTAAYGLDLG---QIK 179

Query: 263 LNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
           L+ +V ++   +G  M+RIGM  P   +  +  I EVLR   VY F+H+PVQSG D VL 
Sbjct: 180 LSDLVRKVTEVEGDFMIRIGMMTPEQAMRDIDGIIEVLRETKVYKFIHLPVQSGDDNVLK 239

Query: 322 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
            MNR+YT+ +++ +V  + + VP + I TDII G PGE +  F  T+ L+++ KF ++H+
Sbjct: 240 LMNRKYTVDEYKDLVKEIRKKVPIVNITTDIIIGHPGEDENAFRNTLELMRDIKFERIHL 299

Query: 382 SQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 417
           + +  RP T +A MK+VP  V K+R +    ++E  
Sbjct: 300 AMYSIRPNTRSASMKQVPDPVKKERIQIANKLYEEL 335


>gi|296242700|ref|YP_003650187.1| MiaB family RNA modification protein [Thermosphaera aggregans DSM
           11486]
 gi|296095284|gb|ADG91235.1| RNA modification enzyme, MiaB family [Thermosphaera aggregans DSM
           11486]
          Length = 427

 Score =  211 bits (536), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 141/379 (37%), Positives = 211/379 (55%), Gaps = 26/379 (6%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++T+GC+ N+SD   M   L   G+ + DN   AD+ +INTCTV+  ++  M   I+ 
Sbjct: 3   VYVETYGCALNRSDEALMKHVLIERGHTIVDNPSNADVVIINTCTVRLDTEQHMLNRISS 62

Query: 121 CK----SAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
            +    + K  L+VAGC+P  Q  +  K     S+V  Q   R+   VE    G  V L 
Sbjct: 63  LRELTQARKGKLIVAGCLPAAQPYKVAKTAPEASLVSPQNSSRIYVAVES--DGRVVMLD 120

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
             ++   + L     NK   I PI  GCL  C++C TKHAR  L S+TVE++V  V T +
Sbjct: 121 GVRERDRIGL--CFENKVAPI-PIQEGCLSNCSFCITKHARRVLVSHTVEAIVKSVETAV 177

Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP---PFIL 289
             G  E+ L+  D G YG ++     LP L+   V+ LP  G   +RIGM NP   P IL
Sbjct: 178 RMGAVEIQLTGMDLGTYGMELYGKRYLPELVRR-VSTLP--GEFRVRIGMINPEHLPPIL 234

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           + L E  +  R   +Y FLH+P+QSGSD VL AMNR+YT+ ++R ++  + + +  + IA
Sbjct: 235 DELLEAVKSDRR--IYRFLHIPLQSGSDKVLKAMNRKYTVDEYRGLIKEVKQKISDVSIA 292

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS-R 408
           TDII G P E +EDF +T+ +I+E +F +VH + +  RP T +A M  +P+ + K+R  R
Sbjct: 293 TDIIVGHPLEDEEDFEETLKIIRELEFERVHFAGYSVRPNTLSAGMPNIPTRIRKERMLR 352

Query: 409 ELTSV----FEAFTPYLGM 423
            L +V    F+    Y+G+
Sbjct: 353 MLETVEEVGFKVREKYIGL 371


>gi|296109521|ref|YP_003616470.1| RNA modification enzyme, MiaB family [methanocaldococcus infernus
           ME]
 gi|295434335|gb|ADG13506.1| RNA modification enzyme, MiaB family [Methanocaldococcus infernus
           ME]
          Length = 411

 Score =  211 bits (536), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 130/400 (32%), Positives = 219/400 (54%), Gaps = 26/400 (6%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++ +GC  N++D+E +   L   G+ +T++ +EA+I +INTC V+  +++ M   I  
Sbjct: 3   VYVEGYGCVLNKADTEIIKESLIKEGFEITESLDEANIVIINTCVVRLETENKMMHRINY 62

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETL-------KGHEVRL 173
             S  K ++VAGC+P+  ++  ++EG   +  ++  R  E++++ L       +G E  L
Sbjct: 63  LNSLGKLVIVAGCLPKALKE--KVEGFYHIYPKEAHRAGEILKDILTKKKKEDRGEEKEL 120

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
              KKL  L      + K V  LPI+ GCLG C+YC  K ARG L SY  E LV +   +
Sbjct: 121 Y--KKLNYL------KPKLVTPLPISEGCLGNCSYCIVKIARGKLISYPREFLVRKAEEL 172

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
           +  G K + ++++DT  YG D G NL  LL  +      +G  ++R+GM +  ++   L 
Sbjct: 173 VKGGAKCLLITAQDTACYGLDRGDNLANLLKDLC---QIEGEFIMRVGMMHAKYLSPILD 229

Query: 294 EIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
           EI E+ R    +  FLH+P+QSG D +L  M R Y++ +F ++V      V  +   TD+
Sbjct: 230 EIIELYREEEKIGKFLHLPLQSGDDEILKLMGRGYSVDEFISIVKEFKRKVKDLCFTTDV 289

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
           I GFPGET+E FN T+ ++++ K   +H +++  R GT AARMK++ + + K+R+  L  
Sbjct: 290 IVGFPGETEEAFNNTLEVLRKLKPDYIHGAKYTQRKGTEAARMKQLDTKIRKRRTEILDK 349

Query: 413 VFEAFT-----PYLGMEGRVERIWITEIAADGIHLVRLEQ 447
           +    +      Y+G E R   I   +   +   +VR E+
Sbjct: 350 LRRELSYLNNKKYVGREMRTLIIEKNKGYTENFKVVRFEK 389


>gi|16081399|ref|NP_393736.1| hypothetical protein Ta0256 [Thermoplasma acidophilum DSM 1728]
 gi|10639399|emb|CAC11401.1| hypothetical protein [Thermoplasma acidophilum]
          Length = 401

 Score =  210 bits (535), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 199/378 (52%), Gaps = 30/378 (7%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY + +GC+ NQ ++     +L + G  L    +EADI +I TC V   ++  M   I +
Sbjct: 3   IYYEGYGCTLNQGETGLYVNKLLSEGSVLVSRPDEADISIIGTCAVIQKTEDHMLKRIEE 62

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVG--VQQIDRVVEVVEETLKGHEVRLLHRKK 178
                +  V+ GC       L  ++G  I G  ++ IDR           +E +      
Sbjct: 63  LSRLGRVKVI-GC-------LSAIKGSEISGGNIEAIDR-----------NEFQQFQE-- 101

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
              L+   +   + +  +PIN GC G C +C +  ARG L S   E +V ++R ++A G 
Sbjct: 102 --YLEDTSIIDAEIMSGIPINQGCTGKCNFCISHIARGKLVSRRPEKIVNQIRMMVAAGK 159

Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           +E+ +SS DT AYG+D G  LP L+  I A    DG  MLR+GM  P   +E L ++ E 
Sbjct: 160 REIRISSLDTAAYGKDTGYRLPSLIKDITA---VDGDFMLRVGMMEPRNTIEILDDLLEA 216

Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
              P V+ FLH+PVQSG D VL+AMNREYT+ +F  ++++  +  P M I+TD+I G+  
Sbjct: 217 YDDPKVFKFLHIPVQSGDDRVLTAMNREYTVDEFMQIIESFRKRFPDMTISTDVIIGYHA 276

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 418
           E D  F+ T +LI++ +   +++++F PR  TP    +  P+ V+K + R +  +     
Sbjct: 277 ENDRSFDLTCDLIRKVQPEIINVTRFSPRELTPDFEHRPRPTNVLKDQDRTMAEIHRKIV 336

Query: 419 P--YLGMEGRVERIWITE 434
              +  + G+VERI ITE
Sbjct: 337 SERFSALVGKVERILITE 354


>gi|73669341|ref|YP_305356.1| 2-methylthioadenine synthase [Methanosarcina barkeri str. Fusaro]
 gi|72396503|gb|AAZ70776.1| 2-methylthioadenine synthase [Methanosarcina barkeri str. Fusaro]
          Length = 442

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 212/393 (53%), Gaps = 20/393 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +Y+++FGCS +Q+ +E M   +   G+ L   + +++A++++ N+CTVK  ++  +   I
Sbjct: 3   VYLESFGCSASQASAEIMKASVERLGHKLLGPEAADQAEVYICNSCTVKYTTEQKILYKI 62

Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVV----EETLKG---- 168
                    ++V+GC+P+   +  L       I+GV  I R+ E++    +  +KG    
Sbjct: 63  RSMGEKNVEVIVSGCMPEVQLEDILHANPEAHILGVNAISRLGELLSLIEQRKMKGLPGG 122

Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             +     + +  L++P+ R N  + I  I+ GC  AC+YC  K+ARG L S+    +V 
Sbjct: 123 EHLEFRASEPVGFLNVPRERSNPNIHICQISQGCNFACSYCIVKYARGKLHSFPPNDIVE 182

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R  +A G +E+WL+S+D   YG D GV LP LL  +++E+P  G   +R+GM NP  +
Sbjct: 183 DIRAAVAGGCREIWLTSQDDSQYGMDTGVRLPELLR-MISEIP--GDFKVRVGMMNPFSV 239

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           L  L ++ +      V+  LH+P+QS S +VL  MNR + +     ++         + +
Sbjct: 240 LPILDDLVDAFDSDKVFKLLHLPIQSASHSVLKRMNRLHKMDVVDMIITKFRARFEDLSL 299

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
            TDII GF  ETD++F +TV  +++Y+  +V+IS++ PRP T A   + + S ++ +RS 
Sbjct: 300 FTDIIVGFCDETDDEFEETVEWVQKYRPEKVNISRYSPRPHTKAFSFRNLDSRILVQRSH 359

Query: 409 ELTSVFEAF-----TPYLGMEGRVERIWITEIA 436
           EL  V E          +G +GRV     TEI 
Sbjct: 360 ELHKVCEQIKLGSKQAMIGWKGRVFVSKYTEIG 392


>gi|397780037|ref|YP_006544510.1| methylthiotransferase [Methanoculleus bourgensis MS2]
 gi|396938539|emb|CCJ35794.1| Putative methylthiotransferase AF_1247 [Methanoculleus bourgensis
           MS2]
          Length = 448

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 192/354 (54%), Gaps = 28/354 (7%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           + +Y++++GC++N +D+  +   L   G  LT   +EAD  +INTCTV   ++  M   +
Sbjct: 42  KKVYIESYGCTYNHADARRLEAILEGLGCRLT-GPDEADAVIINTCTVIGATERKMLRRL 100

Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
           A    A + L V GC+P   R+L  +  V    V   D +          HE       +
Sbjct: 101 A--AFADRDLYVTGCMPLVQREL--INSVCTAHVIHPDEI----------HE-------R 139

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
              +  P       + ++ +  GC+G C+YC T+ ARG L S   E ++  VR ++  G 
Sbjct: 140 ASGVGSPGA---GAIGVVQVASGCVGRCSYCITRLARGRLKSAPPEEILDAVRRLVRSGA 196

Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
            E+ L+ +D  A+G D G  LP LL AI  E+P  G   +R+GM +P  +L  L  + + 
Sbjct: 197 FEIQLTGQDVAAWGLDRGEALPDLLQAIT-EIP--GRFAVRLGMMHPAPVLRILDPLIDA 253

Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
                ++ FLH+PVQSGSDAVL  M R Y  +D   +VD   E  P M I++D I GFPG
Sbjct: 254 YASEKMFRFLHLPVQSGSDAVLERMQRGYRAADVIRIVDAFRERYPDMMISSDFITGFPG 313

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
           ETDE+F QT++L++   F +V+I+++  RPGTPAA +K +P  + K RSR L +
Sbjct: 314 ETDEEFRQTLDLLRRAAFVKVNITRYSRRPGTPAAALKDLPERIRKDRSRALLA 367


>gi|302348200|ref|YP_003815838.1| hypothetical protein ASAC_0400 [Acidilobus saccharovorans 345-15]
 gi|302328612|gb|ADL18807.1| hypothetical protein ASAC_0400 [Acidilobus saccharovorans 345-15]
          Length = 437

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 134/403 (33%), Positives = 215/403 (53%), Gaps = 20/403 (4%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
           T   Y++T+GC+ ++ DSE M   L   GY    +  EAD+ ++NTC V+  +++ +   
Sbjct: 8   TTKYYIETYGCALSEFDSEIMRSILRGAGYEECKDPREADVIIVNTCAVRLDTEAKIVKR 67

Query: 118 IAKCKSAK---KPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
           + +        K LVV+GC+ +   S  L+     S+V  Q + R+++ V  TL      
Sbjct: 68  LKELNGLSLQGKKLVVSGCLSKARPSLILRTAPAASLVSPQNVTRILDAV--TLDRPIYM 125

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           L   + +  L  P  R +  V  + I+ GCL  C++C+TK AR +L SY   ++V  VR 
Sbjct: 126 LDGERDVNFLPKPPTRDS--VATVMISEGCLENCSFCETKLARRYLKSYPPRAIVSIVRD 183

Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           ++  G +E+ L+ +D  AYG D+     LP L+  I+ ++P  G   LRIGM  P   +E
Sbjct: 184 LVQGGAREIRLTGQDAAAYGVDLPGKPRLPDLIADILDKVP--GEYRLRIGMMTPNQAME 241

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
            + ++ +V R   V+ F H+PVQSG D VL  MNR YT+++F+ +   +    P    AT
Sbjct: 242 IIDDLLDVYRDGRVFKFFHIPVQSGDDRVLKIMNRRYTVAEFKELHSKVKAKYPSSLFAT 301

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 410
           DII G PGE +  F  +V L++E KF +V+++Q+  RP T +A M +VP  V K+RS  +
Sbjct: 302 DIIVGHPGEDEGAFMNSVRLVEELKFERVYLAQYSIRPRTASASMPQVPEPVKKERSLRI 361

Query: 411 TSVF-----EAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
             V      E +  Y+G  GR   +  +    +G   VRL+ +
Sbjct: 362 QEVIKKIGVEIYGSYVG--GRFRGLLASRGFREGFSTVRLDNY 402


>gi|333911554|ref|YP_004485287.1| MiaB-like tRNA modifying enzyme [Methanotorris igneus Kol 5]
 gi|333752143|gb|AEF97222.1| MiaB-like tRNA modifying enzyme [Methanotorris igneus Kol 5]
          Length = 413

 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/400 (31%), Positives = 219/400 (54%), Gaps = 28/400 (7%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++ +GC+ N +D+  +   L  +G+ +T N E+AD+ +INTC V+  +++ M   I  
Sbjct: 3   VYVEGYGCTLNTADTNIIENSLRDYGFEITSNIEDADLVIINTCVVRLETENRMFARINY 62

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV-------EVVEETLKGHEVRL 173
            KS  K +VVAGC+ +  +  K++E ++ + +   +  +         +E++    ++ L
Sbjct: 63  FKSLNKKVVVAGCLAKALK--KKVENLADLLIMPREAHLSGKILYKHFIEKSSIEKDINL 120

Query: 174 LHRKKL--PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
             + K   P+L  P          LPI+ GC+G C+YC  K ARG L SY+ E LV + +
Sbjct: 121 EEKLKYLSPSLITP----------LPISEGCIGNCSYCIVKIARGRLVSYSREKLVEKAK 170

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
            +I  G K + ++++DT  YG D   NLP L+N + +    +G  ++RIGM +   +   
Sbjct: 171 ELINSGTKCLLITAQDTACYGFDRNDNLPNLINDLCS---IEGEFIMRIGMMHAKNVENI 227

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           L ++ E  +   V   LH+P+QSG D VL AM REYT+ +F ++V+   + +  +   TD
Sbjct: 228 LDDLIEAYKDEKVAKLLHLPLQSGDDDVLKAMKREYTVDEFISIVNEFRKKIKDLTFVTD 287

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
           II GFP ET+E F  T+ ++++ K   +H +++  R  T AARMK++ + + K+RS  L 
Sbjct: 288 IIVGFPTETEEAFENTLEVLRKLKPDYIHGAKYTSRKYTEAARMKQIDTKIRKRRSEILD 347

Query: 412 SVFEAFTPYLGME---GRVERIWITEIAADGIHLVRLEQF 448
            +    + Y+  +   G+  R+ +TE      H  ++ +F
Sbjct: 348 KLRRELS-YMNNKKYIGKKMRVLVTEEGKGITHNFKVVRF 386


>gi|45357975|ref|NP_987532.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis S2]
 gi|44920732|emb|CAF29968.1| Protein of unknown function UPF0004:Deoxyribonuclease/rho
           motif-related TRAM [Methanococcus maripaludis S2]
          Length = 425

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 200/362 (55%), Gaps = 13/362 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           IY++ +GC+ N +D++ +   ++ F  + LTDN +++DI +INTC V+  ++  M + I 
Sbjct: 3   IYIEGYGCTLNTADTQIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRIE 62

Query: 120 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIV-------GVQQIDRVVEVVEETLKGHEV 171
             KS  K +VVAGC+ +  S+ ++ L  V I+       G    D++++   E       
Sbjct: 63  YFKSLDKKVVVAGCMAKALSKKIENLADVLIMPREAQHSGNILKDKLLKDFSEKNNESTQ 122

Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
            L    KL    + KV     +  LPI  GCLG+CTYC  K ARG+L SY  + +V +  
Sbjct: 123 NLNFEDKLNE-KIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLASYDRDLIVKKAE 181

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
            ++  G K + ++++DT  YG D   +LP L+N I +E+P   +  +RIGM +  F    
Sbjct: 182 ELVKSGTKCLLVTAQDTACYGLDNNDSLPNLINDI-SEIPEKFA--MRIGMMHAKFAEPI 238

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           L E+ E  +   V  FLH+P+QSG D VL  MNR YT+ ++ +V++     +  +   TD
Sbjct: 239 LDELIESFKSEKVVKFLHLPIQSGDDQVLKDMNRNYTVDEYISVLNEFKSKIKNLNFTTD 298

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
           +I GFP ET+E F  T+ ++K+ K    H +++  R  T AA +K+V + + K+RS  L 
Sbjct: 299 VIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKYTKAAILKQVDTKIRKERSEILN 358

Query: 412 SV 413
            +
Sbjct: 359 EL 360


>gi|119871859|ref|YP_929866.1| RNA modification protein [Pyrobaculum islandicum DSM 4184]
 gi|119673267|gb|ABL87523.1| RNA modification enzyme, MiaB family [Pyrobaculum islandicum DSM
           4184]
          Length = 415

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/363 (35%), Positives = 207/363 (57%), Gaps = 32/363 (8%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY++T+GC   ++D+E +  +L   GY    N +EAD+ L+ TC V+   +      I +
Sbjct: 4   IYVETYGCWLAKADAEILRQRL---GYEQVSNVDEADVILVYTCAVREDGEVRQLARIRE 60

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
                K L+VAGC       L  L   +I  +    +++   E  ++G + R +      
Sbjct: 61  LVKLGKELIVAGC-------LARLRPYTIKSLAPHAKLIYPSE--IEGGKERSMK----- 106

Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADG 237
              LPK  R   +  +P+ VGCLG CT+C TK+ RG  G   S   + +V  ++  +A G
Sbjct: 107 --TLPKYERG-LIYTVPLQVGCLGNCTFCATKYTRGGAGYVKSADPDDVVRHIKEAVAKG 163

Query: 238 VKEVWLSSEDTGAYGRDIGVN----LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
            +E++L+ +D   YG D G      LP LL+ I+ E+  +G   +RIGM+ P    + + 
Sbjct: 164 AREIYLTGQDVITYGFDAGWRGGWTLPDLLDRILKEV--EGEYRVRIGMSEPWIFEKFVD 221

Query: 294 EIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI-ELVPGMQIATD 351
           ++ +++ R   VY + H+PVQSGSD VL AM R+YT+ ++R ++  +  EL   + IATD
Sbjct: 222 QLLDIIKRDHRVYRYFHLPVQSGSDKVLVAMGRKYTVEEYRGLIRRIRRELGDNVFIATD 281

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSREL 410
           II GFPGET+EDF +TV L++E +F ++H+++F PRP T AA M ++VP A  K+RS+ L
Sbjct: 282 IIVGFPGETEEDFQETVKLVEELQFDKIHVARFSPRPFTEAAVMPRQVPDAEKKRRSKIL 341

Query: 411 TSV 413
           + V
Sbjct: 342 SEV 344


>gi|448592731|ref|ZP_21651778.1| MiaB-like tRNA modifying enzyme [Haloferax elongans ATCC BAA-1513]
 gi|445730757|gb|ELZ82344.1| MiaB-like tRNA modifying enzyme [Haloferax elongans ATCC BAA-1513]
          Length = 431

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 204/375 (54%), Gaps = 25/375 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +   L   G+   D  EEAD+ ++NTCTV   ++  M     + 
Sbjct: 10  HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 69

Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           +     L+V GC+     D    EGV   I+    +   V   E    G  V        
Sbjct: 70  EQETADLIVTGCMALAQGDDFRDEGVDAQILHWDDVPTAVTNGECPTPGPGVE------- 122

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S +V+  V + R ++  G K
Sbjct: 123 PVLD-------GIVGILPIARGCMSNCSYCITKFATGRVDSPSVQENVEKARALVHAGAK 175

Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   LP LL+ I +E+  +G   +R+GM NP  +    +E+A+V
Sbjct: 176 ELRITGQDTGVYGWDKGDRKLPELLDRICSEI--EGDFRVRVGMANPGGVHGIRQELADV 233

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
             +H  +Y+F+H PVQSGSD VL  M R++ +  FR +V+T  E +    ++TD I G+P
Sbjct: 234 FAKHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFRDIVETFDETLDYWTLSTDFIVGYP 293

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
            ETDED  ++++L++E +  +V++++F  RPGT AA +K +   + K+RS+E++      
Sbjct: 294 TETDEDHERSMDLLREIRPEKVNVTRFSKRPGTDAANLKGLGGTIKKERSKEMSEAKMDI 353

Query: 413 VFEAFTPYLGMEGRV 427
           V EA+   +G E  V
Sbjct: 354 VAEAYEEMVGTEQEV 368


>gi|410670393|ref|YP_006922764.1| MiaB-like tRNA modifying enzyme [Methanolobus psychrophilus R15]
 gi|409169521|gb|AFV23396.1| MiaB-like tRNA modifying enzyme [Methanolobus psychrophilus R15]
          Length = 440

 Score =  207 bits (528), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 123/385 (31%), Positives = 209/385 (54%), Gaps = 22/385 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +++ TFGCS +Q+ +E M   +   G+AL   S+ AD+ +INTCTVK  ++  +  +I +
Sbjct: 3   VHVATFGCSASQASAEIMRAIVRDKGHALVPLSD-ADVLVINTCTVKYATEQKILHIIRE 61

Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
              + K ++V GC+P+   +  +++     I+GV  + RV E+++   K  +     R +
Sbjct: 62  AADSGKEVIVTGCMPEVQLEDIMEQNPQAHILGVNSVSRVGELLDSLGKTGKGGAKGRMQ 121

Query: 179 L------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           +          +P++R N  + I  ++ GC  +C+YC    ARG L S+  E ++  +R 
Sbjct: 122 IFLHQPEGFQSVPRIRYNPNIHICQLSQGCNYSCSYCIVSVARGKLRSFGPEEIIADIRR 181

Query: 233 VIADGVKEVWLSSEDTGAYGRD-----IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            +++G +E+WL+S+D G YG D       + LP LL  I   +P  G   +R+GM NP  
Sbjct: 182 AVSEGCREIWLTSQDNGQYGTDRRGTGKDILLPELLRMICT-IP--GQFRVRVGMMNPFS 238

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           +L  L ++ +   +  VY  LH+P+QS SD VL  MNR +++ +   V+         + 
Sbjct: 239 VLPVLYDLLDAFDNEKVYKLLHLPIQSASDGVLRNMNRYHSIQEANHVIRQFRNKFDDLT 298

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           + TDII GFPGET+EDF ++V  ++E++  +V+IS++ PRP T A       S ++ +RS
Sbjct: 299 LFTDIIVGFPGETEEDFKKSVKWVEEFRPDKVNISRYTPRPRTKAWDFHNSDSRILTRRS 358

Query: 408 RELTSV-----FEAFTPYLGMEGRV 427
            EL  +     F      +G EG V
Sbjct: 359 NELHRICRSTKFATKNKLIGWEGNV 383


>gi|320101289|ref|YP_004176881.1| MiaB family RNA modification protein [Desulfurococcus mucosus DSM
           2162]
 gi|319753641|gb|ADV65399.1| RNA modification enzyme, MiaB family [Desulfurococcus mucosus DSM
           2162]
          Length = 428

 Score =  207 bits (528), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 138/393 (35%), Positives = 215/393 (54%), Gaps = 34/393 (8%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++T+GC+ N+SD   M   ++  G+ L ++  +AD  +INTCTV+  ++  M   I +
Sbjct: 3   VYIETYGCALNRSDEALMRESITGKGHVLVNDPGDADAIIINTCTVRLDTEYHMVKRIRE 62

Query: 121 ----CKSAKKPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
                  A K L+VAGC+ +       +   G S++  Q   RVVEV+E        R++
Sbjct: 63  LYKLSMEAGKKLIVAGCMARAQPYTVSRIAPGASLLSPQNSPRVVEVLEAP-----GRVV 117

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
               + A D   V     V  +P+  GCL  C++C ++HAR  L S++++++V  V   +
Sbjct: 118 MINGVRARDRIGVYVENRVAPIPVQEGCLSNCSFCISRHARRVLVSHSIDAVVKAVGKAV 177

Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
            DG  EV L+  D G YG D+     LP L+  IV  +   G+ MLR+GM NP    EHL
Sbjct: 178 RDGAVEVQLTGMDLGTYGMDLYRARRLPDLIRRIVENV--RGNYMLRVGMINP----EHL 231

Query: 293 KEIAE-----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           + I E     V     VY FLH+P+QSGS+ VL  M R YT+ ++  +VD +   +P + 
Sbjct: 232 RHILEDLVKVVADAENVYKFLHIPLQSGSNRVLKLMRRNYTVEEYLEMVDRVKSSIPEVS 291

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           IATDII G P E++EDF +T+ +I+E  F +VH++ +  RP T +A M+++P++V K+R 
Sbjct: 292 IATDIIVGHPMESEEDFAETLRVIEEAGFERVHLAGYSMRPLTCSAAMQQLPTSVRKERV 351

Query: 408 RELTSVFEAFTPYLGMEGRVE------RIWITE 434
            +   V E     +GM  R        R +ITE
Sbjct: 352 LKALRVVEK----VGMRVRARYVGTSVRCFITE 380


>gi|154150044|ref|YP_001403662.1| MiaB-like tRNA modifying enzyme [Methanoregula boonei 6A8]
 gi|153998596|gb|ABS55019.1| MiaB-like tRNA modifying enzyme [Methanoregula boonei 6A8]
          Length = 430

 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 120/355 (33%), Positives = 192/355 (54%), Gaps = 27/355 (7%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++T+GC +N  D+  +   L  +G  +    E+AD  ++NTCTV  P++  M   ++ 
Sbjct: 25  VYIETYGCRYNFGDTANLVAVLKHYGSTVVPAPEDADAVVVNTCTVVGPTERRMLRRLSA 84

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            +  +KPL V GC+P   R+           +  +   V +  +T++     L+      
Sbjct: 85  LQ--EKPLFVTGCMPLVQRE----------AILAVCSPVIIHPDTIREASRALMTVG--- 129

Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
                    ++ V I+ I  GCLG CTYC T+ ARG L S+ V+ +  ++   +  G  E
Sbjct: 130 ---------SESVGIVQIAQGCLGRCTYCITRRARGPLRSFPVQEIRNKIEEYVRAGAYE 180

Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
           + L+++DT A+GRD G  LP LL A+ + +P  G+  LR+GM NP   L  L ++ +   
Sbjct: 181 IQLTAQDTSAWGRDTGQRLPDLLTAL-SSIP--GNFRLRVGMMNPATTLGILDDLIDAFA 237

Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
              ++ F+H+PVQSGSD +L  M R YT+ +F  +V       P + IATD I GFPGET
Sbjct: 238 SDRLFRFVHLPVQSGSDRILEQMGRGYTVREFEEIVSAFRGRYPDISIATDFIVGFPGET 297

Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
           +EDF++++ LI   +  +V+++++ PRP T     K  P AV K RSR L +  E
Sbjct: 298 EEDFSRSLELIGRIRPAKVNVTRYSPRPFTGPFEEKDFPDAVKKDRSRILNAYAE 352


>gi|254166896|ref|ZP_04873750.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
           boonei T469]
 gi|197624506|gb|EDY37067.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
           boonei T469]
          Length = 386

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/355 (37%), Positives = 192/355 (54%), Gaps = 27/355 (7%)

Query: 78  MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137
           M GQ  A G  +    EEAD+ LI TC V   +++ M   I + K   K +VV GC+P  
Sbjct: 1   MLGQ--AMG-EIVSRPEEADVILIGTCVVIEHTENRMLRRIEELKRYGKKIVVYGCLPSA 57

Query: 138 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILP 197
            ++L +++ V I   +      E+  E L       L R  +  + +        V  +P
Sbjct: 58  RKELLDIDVVPIATWE-----FEMAGEILN------LDRSPMDEVFIWDA-----VATIP 101

Query: 198 INVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV 257
           I  GCLG CTYC T+ ARG + S + E ++  V+  +     E+ +S++DT AYGRDIG 
Sbjct: 102 IANGCLGQCTYCITRLARGRVKSRSKEWILRLVKKALEQRAVEIRISAQDTAAYGRDIGT 161

Query: 258 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317
            L  L+N+I A +P  G   LR+GM  P   L  L E+ +   +P VY FLH+PVQSG +
Sbjct: 162 ELAELINSITA-IP--GKFYLRVGMMEPRETLRILPELIDAYSNPKVYKFLHLPVQSGDN 218

Query: 318 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377
            +L  MNR Y + DF  +V    +  P M ++TDII GFPGE DE F  T+ LIKE K  
Sbjct: 219 EILHRMNRGYKVEDFIKIVRNFRQRFPEMTLSTDIIVGFPGENDESFENTMKLIKEIKPE 278

Query: 378 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-----FEAFTPYLGMEGRV 427
            ++I++F PRP TPA + K+  +  VK+ S++L ++      + F   LG E +V
Sbjct: 279 ILNITRFSPRPKTPAYKWKRPSTNKVKEWSQKLAALHMENMHKRFESMLGKEFKV 333


>gi|340623599|ref|YP_004742052.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis X1]
 gi|339903867|gb|AEK19309.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis X1]
          Length = 425

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 121/362 (33%), Positives = 200/362 (55%), Gaps = 13/362 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           IY++ +GC+ N +D++ +   ++ F  + LTDN +++DI +INTC V+  ++  M + I 
Sbjct: 3   IYIEGYGCTLNTADTQIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRIE 62

Query: 120 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIV-------GVQQIDRVVEVVEETLKGHEV 171
             KS  K +VVAGC+ +  S+ ++ L  V I+       G    D++++   E       
Sbjct: 63  YFKSLDKKVVVAGCMAKALSKKIENLADVLIMPREAQHSGNILKDKLLKDCSEKNNESTQ 122

Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
            L    KL    + KV     +  LPI  GCLG+CTYC  K ARG+L SY  + +V +  
Sbjct: 123 NLNFEDKLNE-KIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLASYDRDLIVKKAE 181

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
            ++  G K + ++++DT  YG D   +LP L+N I +E+P   +  +RIGM +  F    
Sbjct: 182 ELVKSGTKCLLVTAQDTACYGLDNSDSLPNLINDI-SEIPEKFA--MRIGMMHAKFAEPI 238

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           L E+ E  +   V  FLH+P+QSG + VL  MNR YT+ ++ +V++     +  +   TD
Sbjct: 239 LDELIESFKSEKVVKFLHLPIQSGDNQVLKDMNRNYTVDEYISVLNEFKSKIKNLNFTTD 298

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
           +I GFP ET+E F  T+ ++K+ K    H +++  R  T AA +K+V + + K+RS  L 
Sbjct: 299 VIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKYTKAAVLKQVDTKIRKERSEILN 358

Query: 412 SV 413
            +
Sbjct: 359 EL 360


>gi|448578250|ref|ZP_21643685.1| MiaB-like tRNA modifying enzyme [Haloferax larsenii JCM 13917]
 gi|445726791|gb|ELZ78407.1| MiaB-like tRNA modifying enzyme [Haloferax larsenii JCM 13917]
          Length = 426

 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 203/375 (54%), Gaps = 25/375 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +   L   G+   D  EEAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64

Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           +     L+V GC+     D    EGV   I+    +   V   E    G  V        
Sbjct: 65  EQETADLIVTGCMALAQGDDFRDEGVDAQILHWDDVPTAVTNGECPTPGPGVE------- 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S +V+  V + R ++  G K
Sbjct: 118 PVLD-------GIVGILPIARGCMSNCSYCITKFATGRVDSPSVQENVEKARALVHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   LP LL+ I +E+  +G   +R+GM NP  +    +E+A+V
Sbjct: 171 ELRITGQDTGVYGWDKGDRKLPELLDRICSEI--EGDFRVRVGMANPGGVHGIRQELADV 228

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
             +H  +Y+F+H PVQSGSD VL  M R++ +  FR +V+T  E +    ++TD I G+P
Sbjct: 229 FAKHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFRDIVETFDETLDYWTLSTDFIVGYP 288

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
            ETDED  +++ L++E +  +V++++F  RPGT AA +K +   + K+RS+E++      
Sbjct: 289 TETDEDHERSMALLREIRPEKVNVTRFSKRPGTDAADLKGLGGTIKKERSKEMSEAKMDI 348

Query: 413 VFEAFTPYLGMEGRV 427
           V EA+   +G E  V
Sbjct: 349 VAEAYEEMVGTEQEV 363


>gi|150403330|ref|YP_001330624.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C7]
 gi|150034360|gb|ABR66473.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C7]
          Length = 425

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/362 (33%), Positives = 197/362 (54%), Gaps = 13/362 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFG-YALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           IY++ +GC+ N +D+E +   ++ F  + L DN +++DI +INTC V+  ++  M + I 
Sbjct: 3   IYIEGYGCTLNTADTEIIKNSVNEFEEFELADNVDDSDIIVINTCIVRQETEHRMISRIE 62

Query: 120 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIV-------GVQQIDRVVEVVEETLKGHEV 171
             KS  K +VVAGC+ +   + +K L  V I+       G+   D +++   E    +  
Sbjct: 63  YFKSLDKKVVVAGCMAKALPKKIKNLADVLIMPREAQYSGIILKDNLLKECSEKYNEYNQ 122

Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
            L     L    + KV     +  LPI  GCLG+CTYC  K ARG+L SY  + +V +  
Sbjct: 123 NLNFEDNLNE-KIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLVSYDRDLIVKKAE 181

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
            ++  G K + ++++DT  YG D   NL  L++ I +E+P   +  +RIGM +  F    
Sbjct: 182 ELVKTGTKCLLVTAQDTACYGLDNKDNLSNLIDDI-SEIPEKFA--MRIGMMHAKFAEPI 238

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           L E+ E  +   V  FLH+P+QSG D VL  MNR YT+ ++ +V+D     +  +   TD
Sbjct: 239 LDELIESFKSEKVVKFLHLPIQSGDDQVLKDMNRNYTVDEYISVLDEFKSKIKNLNFTTD 298

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
           +I GFP ET+E F  T+ ++K+ K    H +++  R  T AA +K+V + + K+RS  L 
Sbjct: 299 VIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKYTKAAVLKQVDTKIRKERSEILN 358

Query: 412 SV 413
            +
Sbjct: 359 EL 360


>gi|305663521|ref|YP_003859809.1| MiaB family RNA modification protein [Ignisphaera aggregans DSM
           17230]
 gi|304378090|gb|ADM27929.1| RNA modification enzyme, MiaB family [Ignisphaera aggregans DSM
           17230]
          Length = 426

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/380 (32%), Positives = 209/380 (55%), Gaps = 11/380 (2%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY++T+GC+ N++D+  +   L      + D+  EAD+ ++NTC V+  ++  M   + +
Sbjct: 3   IYIETYGCALNRADTNIIKTLLIEKKIEIVDSPREADVIILNTCVVRYDTEVRMLKRLEE 62

Query: 121 CKSAKKPLVVAGCVPQGSRDLK-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
                K ++V+GC+   +R L  ++  V+   V    + +  + E +   +  +   +  
Sbjct: 63  LSKTGKKIIVSGCM---ARALPIKIRSVNPKAVLLPPQSIHRIYEAINADDGYIFFDEIK 119

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
               +PK+  +     +P+  GCL  C++C  K AR HL S  +E++V  V+ VI+ G  
Sbjct: 120 TFTVMPKII-DGVKATIPVAEGCLDECSFCIVKIARPHLKSIPIENIVNAVKEVISMGAI 178

Query: 240 EVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
           E+ ++++D   YG DI     LP LL +I+     D   ++RIG  NP  ++ +L     
Sbjct: 179 EIEITAQDLSVYGYDIYGEYALPKLLESILEIERED--FVIRIGQLNPRHLVNYLDRFIA 236

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
           +LR P VY  +H+PVQSG++ VL AMNR++ +  F  ++  L + + G+QIATDII G P
Sbjct: 237 ILRDPRVYKHVHIPVQSGNNRVLEAMNRKHGVELFLDIISELRKKIEGIQIATDIIVGHP 296

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 417
           GE +E F  +V LI E    +VHI+++ PRP T ++ MK++P  + K RS  +  ++E  
Sbjct: 297 GEDEEAFMDSVKLITENYIDRVHIARYSPRPLTRSSLMKQIPDPIKKSRSSYIEKIYEVV 356

Query: 418 TPYLGME--GRVERIWITEI 435
              +  E  G +  +WITEI
Sbjct: 357 AYEVNREYIGSIAEVWITEI 376


>gi|134046253|ref|YP_001097738.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C5]
 gi|132663878|gb|ABO35524.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C5]
          Length = 425

 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 207/378 (54%), Gaps = 22/378 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           IY++ +GC+ N +D+E +   ++ F  + LTDN +++DI +INTC V+  ++  M + I 
Sbjct: 3   IYIEGYGCTLNTADTEIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRIE 62

Query: 120 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIV-------GVQQIDRVVEVVEETLKGHEV 171
             KS  K +VVAGC+ +   + +K L  V ++       G    D +++   E   G   
Sbjct: 63  YFKSLDKKVVVAGCMAKALPKKIKTLADVLVMPREAQYSGKILKDNLLKGCSEK-NGKSN 121

Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
             L+ +      + KV     +  LPI  GCLG+CTYC  K ARG+L SY  + +V +  
Sbjct: 122 ENLNFEDQLNEKIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLASYDRDLIVKKAE 181

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
            ++  G K + ++++DT  YG D   +LP L+N I +E+P   +  +RIGM +  F    
Sbjct: 182 ELVKTGTKCLLVTAQDTACYGLDNNDSLPNLINDI-SEIPEKFA--MRIGMMHAKFAEPI 238

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           L E+ E  +   V  FLH+P+QSG D VL  MNR YT+ ++ +V++     +  +   TD
Sbjct: 239 LDELIESFKSKKVVKFLHLPIQSGDDQVLKDMNRNYTVDEYISVLNEFKSKIKNLNFTTD 298

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS---- 407
           +I GFP ET+E F  T+ ++K+ K    H +++  R  T AA +K+V + + K+RS    
Sbjct: 299 VIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKYTKAAILKQVDTKIRKERSEILN 358

Query: 408 ---RELTSVFEAFTPYLG 422
              REL+  +E  T ++G
Sbjct: 359 ELRRELS--YENNTRHIG 374


>gi|171186225|ref|YP_001795144.1| RNA modification protein [Pyrobaculum neutrophilum V24Sta]
 gi|170935437|gb|ACB40698.1| RNA modification enzyme, MiaB family [Pyrobaculum neutrophilum
           V24Sta]
          Length = 415

 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 130/362 (35%), Positives = 201/362 (55%), Gaps = 31/362 (8%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY++T+GC   ++D+E +  +L   G    D+ EEAD+ L+ TC V+   +      I +
Sbjct: 4   IYVETYGCWLAKADAEVVRQRL---GLERADSPEEADLVLVYTCAVREDGEVRQLARIRE 60

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
                + +VVAGC+ +    L+     S     ++     +    ++G   R + R    
Sbjct: 61  LAGLGRRMVVAGCLAR----LRPYTVKSAAPGAEL-----LYPSQVEGGREREMRR---- 107

Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADG 237
              LP+      V + P+ VGCLG CT+C TK+ RG  G   S + + +V  VR  +A G
Sbjct: 108 ---LPRYE-GGVVYVAPLQVGCLGNCTFCATKYTRGGAGYVRSASPDDVVAHVREAVARG 163

Query: 238 VKEVWLSSEDTGAYGRDIGV----NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
            +EV+L+ +D   YG D G     NLP LL  I+ E+  +G   +RIGM+ P    +   
Sbjct: 164 AREVYLTGQDVITYGFDAGWRGGWNLPDLLERILREV--EGDYRVRIGMSEPWVFAKFAD 221

Query: 294 EIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
           ++ +V+ R   VY + H+PVQSGSD VL AM R YT+ ++R +V  +   +    IATDI
Sbjct: 222 QLLDVVKRDGRVYRYFHLPVQSGSDRVLRAMGRRYTVGEYRELVRKIRRELGDAFIATDI 281

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 411
           I GFPGE +E+F ++V L++E KF +VH+++F PRP T AA M ++VP A  K+RS+ L+
Sbjct: 282 IVGFPGEAEEEFVESVKLVEELKFDKVHVARFSPRPFTEAAVMPRQVPDAEKKRRSKILS 341

Query: 412 SV 413
            V
Sbjct: 342 EV 343


>gi|124485405|ref|YP_001030021.1| hypothetical protein Mlab_0580 [Methanocorpusculum labreanum Z]
 gi|124362946|gb|ABN06754.1| MiaB-like tRNA modifying enzyme [Methanocorpusculum labreanum Z]
          Length = 416

 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/366 (33%), Positives = 196/366 (53%), Gaps = 52/366 (14%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           ++Y +T+GC++N  D+E +       G     ++EEAD  LINTC V   ++  M   + 
Sbjct: 16  SLYTETYGCTYNAGDTEKLMEIARNQGCVPASSAEEADAILINTCVVIDKTEQHMYERLD 75

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
               A K L V GC+P  + D+                                  R + 
Sbjct: 76  L--YAGKLLFVTGCLPPVAADVL---------------------------------RTRY 100

Query: 180 PALDL--PKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           P + +  P +  + ++E+          L I  GC G CTYC T+ ARG L S++ E +V
Sbjct: 101 PKIHIIDPALIHSCYMEVGTAHVGTNAVLQIARGCNGHCTYCITRLARGKLVSFSAEDIV 160

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYG--RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
            + ++++  G  E+ L+++DT ++G  R+ G+ LP LL  + A +P  G+ M+RIGM NP
Sbjct: 161 RQAKSIVEAGATEIQLTAQDTSSWGLDRNDGLRLPDLLRQLCA-IP--GNFMIRIGMANP 217

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             +L  L +  + L+ P ++ FLH+PVQSGSD+VL  M R YT + +  +     +  P 
Sbjct: 218 DTLLPILDDFLDALKDPKIFLFLHIPVQSGSDSVLRLMGRRYTSAQYEEICQRARKAFPE 277

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
           ++I+TD I GF GETDED  ++   I+  +  +V+I++F  RP TPAA+MKK+P  + K+
Sbjct: 278 IRISTDYIAGFSGETDEDAAKSAEQIRRTRPGKVNITRFSVRPNTPAAKMKKIPEPIKKQ 337

Query: 406 RSRELT 411
           RSRELT
Sbjct: 338 RSRELT 343


>gi|219853312|ref|YP_002467744.1| MiaB-like tRNA modifying enzyme [Methanosphaerula palustris E1-9c]
 gi|219547571|gb|ACL18021.1| MiaB-like tRNA modifying enzyme [Methanosphaerula palustris E1-9c]
          Length = 420

 Score =  204 bits (518), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 188/349 (53%), Gaps = 29/349 (8%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++ +GC+ N +D+  +   L A G  +    EEAD  ++NTCTV  P++  M  L   
Sbjct: 26  VYLEEYGCTFNHADTLALVEVLKAQGCTIVPTPEEADAVVLNTCTVIGPTERLM--LRQM 83

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE-ETLKGHEVRLLHRKKL 179
            + +   L + GC+P                  Q+D + EV   + +   E+R       
Sbjct: 84  RRYSGHDLYLTGCMP----------------AVQMDAICEVCSPKVIPPEEIR------- 120

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
            A  L        + ++ +  GC G C+YC T++ARG L S+    +  RV+  + +G  
Sbjct: 121 AAYTLVNTTVPSAIGVVQVGQGCAGRCSYCITRNARGPLQSFQPPDIYNRVQQAVDNGAV 180

Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
           EV L+ +D  ++G D+G +LP LL  I A  P  G   LR+GM NP  +L  L ++    
Sbjct: 181 EVQLTGQDLSSWGLDLGRSLPDLLRGITA-FP--GDYRLRLGMMNPATVLPILDDLIAAY 237

Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
           +   ++ FLH+P+QSGSD VL+AMNR YT SD + ++    E+ P + + TD+I GFPGE
Sbjct: 238 QSDRIFQFLHLPIQSGSDRVLAAMNRSYTASDVQQILRAFREVHPDLTLMTDLIVGFPGE 297

Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
           TD+DF +T+ +I      +V+++++  RPGTPAA +  +  +V K RSR
Sbjct: 298 TDQDFEETLQMITALSPNKVNMTRYSGRPGTPAADLPDLQDSVKKDRSR 346


>gi|355571405|ref|ZP_09042657.1| MiaB-like tRNA modifying enzyme [Methanolinea tarda NOBI-1]
 gi|354825793|gb|EHF10015.1| MiaB-like tRNA modifying enzyme [Methanolinea tarda NOBI-1]
          Length = 410

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 134/398 (33%), Positives = 209/398 (52%), Gaps = 34/398 (8%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           +PGT  +YM+T+GC++N+ DS  +A  L A G  L  +   AD  +INTC V   ++  +
Sbjct: 11  LPGTR-VYMRTYGCTYNEGDSWKLAEILKARGCILVSDPLLADAIVINTCIVVGKTERKI 69

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
             L    + A +PL V GC+P             +V    I  V + V          ++
Sbjct: 70  --LHELRQHAGRPLYVTGCMP-------------LVQADAIRNVCDPV----------II 104

Query: 175 HRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           H   + A   +L  V +   V ++    GCLG+C+YC T  ARG L S ++E +      
Sbjct: 105 HPDDIHAAYAELKTVPQGS-VGVVQACRGCLGSCSYCVTHLARGKLVSRSLEDVTQEAAR 163

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
           ++A G  E+ L+ +D  A+GRD G +   LL ++ A     G  M+R GM NP  +   +
Sbjct: 164 LVAAGAVELRLTGQDLSAWGRDTGQSPADLLRSLDALC---GRFMIRAGMMNPATLFPVM 220

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
            E+AE  R P +++ LH+P+QSG++ VLS M R YT     ++V+     VP + + TDI
Sbjct: 221 DEVAEAFRLPKIFAALHLPIQSGAEKVLSRMRRGYTQEQVVSIVERFEREVPALSLTTDI 280

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
           ICG+PGET +DF++T+ L++  +  +V ++++ PRPGT A   K +P  + K+RSR L  
Sbjct: 281 ICGYPGETGDDFSETLALLQRIRPDRVIVTRYSPRPGTRAWHEKDMPDRIKKERSRTLRV 340

Query: 413 VFE--AFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
             E  A       +GRV  + ITE    G  L R  ++
Sbjct: 341 CAEEIARQKNAKWKGRVLPVMITEHVRPGTSLGRTREY 378


>gi|448415535|ref|ZP_21578265.1| miab-like tRNA modifying enzyme [Halosarcina pallida JCM 14848]
 gi|445680488|gb|ELZ32932.1| miab-like tRNA modifying enzyme [Halosarcina pallida JCM 14848]
          Length = 423

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 200/375 (53%), Gaps = 25/375 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +   L   G+   +  EEAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESRAIESALRDAGHYRVEGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64

Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           +S    L++ GC+   QG    +E     I+    +   V   E    G           
Sbjct: 65  ESETADLIITGCMALAQGEEFREEEVDAQILHWDDVPSAVTNGECPTPGPGTE------- 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S +VE  V + R ++  G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   LP LL  I +E+  DG   +R+GM NP  I    +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGDRKLPELLERICSEI--DGDFRVRLGMANPGGIHGIHEELADV 228

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
             RH  +Y+F+H+PVQSGSDAVL  M R++ ++ F  VV+T    +    ++TD I GFP
Sbjct: 229 FDRHEKLYNFIHLPVQSGSDAVLEEMRRQHRVAKFLEVVETFDRELDYWTLSTDFIVGFP 288

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
            ET+ D  Q++ L +E +  +V++++F  RPGT AA MK +   V K+RS+ ++      
Sbjct: 289 SETEADHEQSMALFREVRPEKVNVTRFSKRPGTDAAEMKGLGGTVKKERSKAMSELKMDV 348

Query: 413 VFEAFTPYLGMEGRV 427
           V EA+   +G   RV
Sbjct: 349 VAEAYEAMVGETHRV 363


>gi|395645589|ref|ZP_10433449.1| MiaB-like tRNA modifying enzyme [Methanofollis liminatans DSM 4140]
 gi|395442329|gb|EJG07086.1| MiaB-like tRNA modifying enzyme [Methanofollis liminatans DSM 4140]
          Length = 413

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/354 (34%), Positives = 192/354 (54%), Gaps = 30/354 (8%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++T+GC++N +D+  +A  L   G  +    +EAD+ +INTCTV   ++  M   I  
Sbjct: 9   VYIETYGCTYNHADTRKLALILEGQGCRIVAGPDEADVVVINTCTVIGKTERHMLRRIRA 68

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV--EVVEETLKGHEVRLLHRKK 178
              A + L V GC+P        ++   I+G     R++  E + E   G    ++    
Sbjct: 69  --FADRDLYVTGCMPV-------VQAAEILGAAPSARLLFPEEISERFCGACTGVVGGAG 119

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
                           I+ +  GC G C YC T+ ARG L S   E++   V  ++  G 
Sbjct: 120 ----------------IVQVAAGCAGRCAYCITRAARGPLRSRPKEAICREVEALVGRGA 163

Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
            EV ++ +D  A+G D+G  LP L++A V+ LP  G  +LR+GM NP         +A +
Sbjct: 164 YEVQVTGQDVSAWGMDLGERLPALIDA-VSVLP--GDFLLRLGMMNPATAQGIAVPLARL 220

Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
           L    V+SF+H+PVQSGSDAVL+AM R YT  +F  +V    +  P ++I TD I G+P 
Sbjct: 221 LGEAKVFSFVHLPVQSGSDAVLAAMRRGYTAGEFEAMVAAFRKACPEVRICTDFIVGYPT 280

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
           ET+EDF +++ L++  +  +V+++++ PRPGTPAA +K +P  + K RSR L +
Sbjct: 281 ETEEDFAESMALLRAIRPEKVNVTRYSPRPGTPAAALKTMPERIAKDRSRILDA 334


>gi|448407296|ref|ZP_21573684.1| MiaB-like tRNA modifying enzyme [Halosimplex carlsbadense 2-9-1]
 gi|445675632|gb|ELZ28161.1| MiaB-like tRNA modifying enzyme [Halosimplex carlsbadense 2-9-1]
          Length = 418

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 135/386 (34%), Positives = 208/386 (53%), Gaps = 27/386 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +   L   G+   D  EEAD+ ++NTCTV   ++  M    A+ 
Sbjct: 5   HIETYGCTANRGESRQIERSLRDGGHHPADGPEEADVAILNTCTVVEKTERNM-LRRAEE 63

Query: 122 KSAKKP--LVVAGC--VPQGSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHR 176
             A+ P  LVV GC  + QG    +E     +   V   D V E V    +  E      
Sbjct: 64  LDAETPADLVVTGCMALAQG----EEFAAADLDAEVLHWDEVPEYV----RNGECPTTTP 115

Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
              P LD         V ILPI  GC+  C+YC TKHA G + S +VE  + + R ++  
Sbjct: 116 DTEPVLD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPSVEENLEKARALVHA 168

Query: 237 GVKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
           G +E+ ++ +DTG YG D G   L +LL+ I  E+  +G   +R+GM NP  +    +E+
Sbjct: 169 GAREIRITGQDTGVYGWDEGERKLHVLLDRICTEI--EGEFRVRVGMANPKGVHGIREEL 226

Query: 296 AEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           AEV   H  +Y+FLH PVQSGSD VL  M R++ +S++  VV+T  + +    ++TD I 
Sbjct: 227 AEVFAAHDELYNFLHAPVQSGSDDVLGDMRRQHQVSEYVEVVETFDDYLDEWTLSTDFIV 286

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           GFP ETD DF Q++ L++E +  ++++++F  RPGT AA MK +   V K+RS+ ++ + 
Sbjct: 287 GFPTETDRDFEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELK 346

Query: 415 EAFTP--YLGMEGRVERIWITEIAAD 438
                  Y  M G V  + +TE   D
Sbjct: 347 MDVMDEVYESMVGDVRSVLLTEDGTD 372


>gi|11498846|ref|NP_070075.1| hypothetical protein AF1247 [Archaeoglobus fulgidus DSM 4304]
 gi|2649334|gb|AAB89997.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 405

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 123/366 (33%), Positives = 205/366 (56%), Gaps = 21/366 (5%)

Query: 94  EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 153
           E+A++ +IN+C V   ++  +   +   K   K +V+AGC+ + S++   +   S +   
Sbjct: 15  EDAEVVIINSCGVIDFTERKIIRRMLDLKREGKKVVLAGCLTRISKEALSVAD-SALSPD 73

Query: 154 QIDRVVEVVEETLKGH----EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 209
            +D VV+ V   L G     E R + + +   L   ++R N  + I+ I+ GCLG C++C
Sbjct: 74  NLDMVVDAVYSALNGRKLFTERRFIDKAEFSHLKC-RLRENA-IAIVSISEGCLGKCSFC 131

Query: 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 268
            TK ARG L S++++++V      +  G +E+ L+S+DTGAYG D G   LP LL  I +
Sbjct: 132 ATKFARGRLRSFSMDAIVREAERAVRAGYREIQLTSQDTGAYGMDKGRAMLPELLRKI-S 190

Query: 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 328
           E+  +G   +R+GM NP   +  L E+        +Y FLH+PVQSG + +L  M R +T
Sbjct: 191 EI--EGEFRVRVGMMNPQHAVRMLDELINAYSSEKIYKFLHIPVQSGDNRILEDMKRNHT 248

Query: 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
           + D+  VV+        + I+TDII GFP ET+E F ++  LIKE +   V+I+++  R 
Sbjct: 249 VEDYVEVVEAFRNSFDDVLISTDIIVGFPTETEEAFWKSYELIKETRPDIVNITRYSARK 308

Query: 389 GTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME------GRVERIWITEIAADGIHL 442
           GTPAAR++ +P  + K+RSR+LT +       +G+E      G+  R+ +T+   +G +L
Sbjct: 309 GTPAARLRDIPGWIKKERSRKLTDLMRK----IGLENNKRFVGKKLRVLVTKEGKNGRNL 364

Query: 443 VRLEQF 448
            R+  +
Sbjct: 365 ARMNSY 370


>gi|18313702|ref|NP_560369.1| hypothetical protein PAE2939 [Pyrobaculum aerophilum str. IM2]
 gi|18161255|gb|AAL64551.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 416

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 202/365 (55%), Gaps = 36/365 (9%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++T+GC   ++D+E +  +L   G  L  N EE+D+ LI TC V+   +      I  
Sbjct: 4   VYVETYGCWLAKADAEILRQRL---GLELASNVEESDVVLIYTCAVREDGEVRQLARIRD 60

Query: 121 CKSAKKPLVVAGCVPQ-GSRDLKELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
              + + ++VAGC+ +     +K L  G +++  QQ++           G E  +   K 
Sbjct: 61  LAKSGREMIVAGCLARLRPYTIKSLAPGAALIYPQQVE----------GGPEREM---KI 107

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIA 235
           LP            V  +P+ VGCLG CT+C TK+ RG  G   S   E +V +V+  +A
Sbjct: 108 LPEFS------GGVVYTVPLQVGCLGNCTFCATKYTRGGAGYVKSADPEEVVRKVKKAVA 161

Query: 236 DGVKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
            G +E++L+ +D   YG ++    G NLP LL  I+ E+  DG   +RIGM+ P    + 
Sbjct: 162 MGAREIYLTGQDVITYGFEMRWKRGWNLPDLLERILKEV--DGEYRIRIGMSEPWVFEKF 219

Query: 292 LKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IA 349
             +I +V+ R   VY + H+PVQSGSD VL  M R+YT+ ++R +V  +  ++     IA
Sbjct: 220 ADQILDVVKRDRRVYRYFHLPVQSGSDKVLRVMGRKYTVDEYRELVRKIRRVLGETTFIA 279

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 408
           TDII GFPGE +EDF  TV L +E +F ++H+++F PRP T AA M K+VP    K+RS+
Sbjct: 280 TDIIVGFPGEEEEDFWATVKLAEELQFDKIHVARFSPRPFTEAAVMPKQVPDVEKKRRSK 339

Query: 409 ELTSV 413
            L+ +
Sbjct: 340 ALSEI 344


>gi|37523584|ref|NP_926961.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gloeobacter
           violaceus PCC 7421]
 gi|81708482|sp|Q7NE65.1|MIAB_GLOVI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|35214589|dbj|BAC91956.1| glr4015 [Gloeobacter violaceus PCC 7421]
          Length = 441

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/395 (33%), Positives = 207/395 (52%), Gaps = 26/395 (6%)

Query: 56  PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
           P  +T  + TFGC  N++DSE MAG L+  GY + D S+ AD+ L NTCT++  ++  + 
Sbjct: 7   PQGKTACLVTFGCQMNKADSERMAGALTHLGYRIVDESDTADLVLFNTCTIRDNAEQKVY 66

Query: 116 TLIAKCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
           + + +    K+      LV+AGCV Q  G + L+ +  + +V G Q ++R+ +++E   +
Sbjct: 67  SYLGQQARRKQRDPHITLVLAGCVAQQEGEKLLRRVPELDLVMGPQHVNRLSDLLERVAE 126

Query: 168 GHEVRLLHRKKLPAL-DLPKVRRNKFVEILP-INVGCLGACTYCKTKHARGHLGSYTVES 225
           G +V  +  + +  L D+ K RR+  V     I  GC   CTYC     RG   S T E+
Sbjct: 127 GEQV--VATEPIEILEDITKPRRDSAVTAWANIIYGCNEGCTYCIVPSVRGREQSRTPEA 184

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
           +   +  + A G KEV L  ++  AYGRDIG NL  LL   +   P  G   LR   ++P
Sbjct: 185 IKAEICELGASGYKEVTLLGQNIDAYGRDIGTNLASLLR-FIHNAP--GIERLRFATSHP 241

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
            +  + L  IA     P V    H+P QSG + VL  M R YT   +R +++ +  ++P 
Sbjct: 242 RYFSDEL--IATCAELPKVCEHFHIPFQSGDNEVLRRMARGYTHEKYRAIIEKIRAILPD 299

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
             I+ D+I GFPGET+  F  ++ L+ E +F  ++ + + PRPGTPAAR        VK 
Sbjct: 300 AAISADLIVGFPGETEAQFENSLRLVDELEFDALNTAAYSPRPGTPAARWPGQLDDEVKQ 359

Query: 405 ---KRSRELTS--VFEAFTPYLGMEGRVERIWITE 434
              +R+  L +   FE    YL   GR E++ + E
Sbjct: 360 DRLQRTNRLVAQKAFERSQRYL---GRTEQVLVEE 391


>gi|268325056|emb|CBH38644.1| conserved hypothetical protein, UPF0004 family, radical SAM
           superfamily, TRAM family [uncultured archaeon]
          Length = 430

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 199/386 (51%), Gaps = 28/386 (7%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
           GT  ++++TFGC+ N  D+  M   L   G+ + + SE ADI ++NTCTV   ++  +  
Sbjct: 9   GTAKVFIETFGCTANTGDTMEMRAILRNAGHEIVEESE-ADIVIVNTCTVTKRTELNVIK 67

Query: 117 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
            + + K   K +VVAGC+     +L                       ++ G +V ++  
Sbjct: 68  RLNELKERGKAVVVAGCMAAAQPELVR---------------------SILGDDVAMVTP 106

Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
           + + A +  ++  +  + ++ I  GC+G CTYC  K ARG L SY  E +   V++ +  
Sbjct: 107 RDIQAREKQRLEFDGVIAVITIAQGCIGKCTYCIVKQARGKLKSYKPEKICEAVKSAVES 166

Query: 237 GVKEVWLSSEDTGAYGR-DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
           G  E+ ++S+D+ AYG     + LP LL  I +    +G   +R+GM NP  ++  L E+
Sbjct: 167 GANEIRITSQDSSAYGWGSTDIKLPALLEQITS---VEGDFRIRVGMMNPFTLMPILDEL 223

Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
            E      ++ F HVPVQSGSD VL  M R Y ++DF  +V  +        I+TD I G
Sbjct: 224 LEAFNTEKIFKFFHVPVQSGSDRVLREMRRNYKVADFVEIVTNIRARFRQSTISTDFIIG 283

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
           FP ET+EDF  ++ L++E K  +V+I++F PRP T A+++  +     K+RSR  ++ + 
Sbjct: 284 FPTETEEDFFASLYLLEEIKPEKVNITRFSPRPRTEASKLTDLLEREKKRRSRIFSTGYH 343

Query: 416 --AFTPYLGMEGRVERIWITEIAADG 439
              F     +EG    + +TE    G
Sbjct: 344 NIVFAKNKELEGAELPVLVTEPGKKG 369


>gi|159904885|ref|YP_001548547.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C6]
 gi|159886378|gb|ABX01315.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C6]
          Length = 425

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 122/361 (33%), Positives = 198/361 (54%), Gaps = 11/361 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           IY++ +GC+ N +D+E +   ++ F  + LTDN +++DI +INTC V+  ++  M + I 
Sbjct: 3   IYIEGYGCTLNTADTEIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRIE 62

Query: 120 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIVGVQQIDRVVEVVEETLKG-HEVRLLHRK 177
             KS  K +VVAGC+ +   + +K L  V I+  +     + +    LKG  E      +
Sbjct: 63  YFKSLDKKVVVAGCMAKALPKKIKNLADVLIMPREAQYSGIILKNNLLKGCSEKNGKSNE 122

Query: 178 KLPALD-----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
            L   D     + KV     +  LPI  GCLG+CTYC  K ARG+L SY  + +  +   
Sbjct: 123 NLNFEDQLNEKIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLVSYDRDLIFKKAEE 182

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
           ++  G K + ++++DT  YG D   +LP L+N I +E+P   +  +RIGM +  F    L
Sbjct: 183 LVKTGTKCLLVTAQDTACYGLDNNDSLPNLINDI-SEIPEKFA--MRIGMMHAKFAEPLL 239

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
            E+ E  +   V  FLH+P+QSG D VL  MNR Y++ +F +V++     +  +   TD+
Sbjct: 240 DELIESFKSEKVVKFLHLPIQSGDDQVLKDMNRNYSVDEFISVLNEFKLKIKNLNFTTDV 299

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
           I GFP ET+E F  T+ ++K+ K    H +++  R  T AA +K+V + + K+RS  L  
Sbjct: 300 IVGFPTETEEAFQNTLEIVKKIKPDFTHAAKYSQRKYTKAAVLKQVDTKIRKERSEILNE 359

Query: 413 V 413
           +
Sbjct: 360 L 360


>gi|188996756|ref|YP_001931007.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|229891027|sp|B2V930.1|MIAB_SULSY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|188931823|gb|ACD66453.1| RNA modification enzyme, MiaB family [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 437

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 137/392 (34%), Positives = 214/392 (54%), Gaps = 23/392 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y+KTFGC  N +DSE MAG L   GY  T+N EEAD+ L+NTC+V+      + + + +
Sbjct: 3   FYIKTFGCQMNVNDSEKMAGILQTLGYTPTENWEEADVILVNTCSVREKPDQKVLSALGE 62

Query: 121 CKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-V 171
            K  KK      + V GC+ Q  G    ++   + IV G   I  +  ++EE   G++ +
Sbjct: 63  FKKVKKHNPNAVIGVCGCLAQRAGYEIYQKAPFIDIVFGTTNIHHLPNLLEEAKSGNKAI 122

Query: 172 RLLHR--KKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
            +L    +    LD  P VR NK+   + +  GC   CTYC     RG   S  +  ++ 
Sbjct: 123 EILEEIDENENLLDQFPTVRENKYTAFVTVIRGCDKKCTYCIVPTTRGRERSRRIGDILR 182

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            V+ ++ DGVKE+ L  ++  AYG+D G V    LL A VAE+  DG   +R    +P  
Sbjct: 183 EVQYLVEDGVKEIHLIGQNVTAYGKDFGDVKFWELLKA-VAEV--DGVERIRFTTGHPRD 239

Query: 288 ILEH-LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
           + E  +K +A++   P +   LH+P+Q+GSD +L AM+R YT  ++   ++ L + +P +
Sbjct: 240 LDEDTIKVMADL---PQICEALHLPIQAGSDRILQAMDRGYTQKEYLQKIELLKKYIPNI 296

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS-AVVKK 405
            ++TDII GFPGET ED+ +TV +IKE ++ QV   ++ PRPGTPAA +    S   + K
Sbjct: 297 ALSTDIIVGFPGETYEDYLETVKVIKEVEYDQVFAFKYSPRPGTPAADLPMTESPEELSK 356

Query: 406 RSRELTSVFE--AFTPYLGMEGRVERIWITEI 435
           R  +L ++ +   F   L  + ++  I + EI
Sbjct: 357 RLNDLINLQKDITFKKNLEYQDKIVEILVEEI 388


>gi|225849364|ref|YP_002729528.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643388|gb|ACN98438.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 437

 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 140/395 (35%), Positives = 215/395 (54%), Gaps = 23/395 (5%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS-PSQSAMDTL--I 118
           Y++TFGC  N +DSE MAG L   GY    + +EAD+ L+NTC+V+  P Q  +  L   
Sbjct: 4   YIRTFGCQMNVNDSEKMAGILKTLGYEPAQDWKEADVILVNTCSVREKPDQKVLSALGEF 63

Query: 119 AKCKSAKKPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-VR 172
            K K  K   +  V GC+ Q  G   L++   + +V G   I  + +++EE   G++ V 
Sbjct: 64  KKIKKDKPNAIIGVCGCLAQRAGYEILQKAPFIDMVFGTTNIHHLPQLLEEAKSGNKAVE 123

Query: 173 LLHR--KKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           +L    +    LD  P VR NK+   + +  GC   CTYC     RG   S  +  ++  
Sbjct: 124 ILEEIDENENLLDQFPTVRENKYTAFVTVIRGCDKKCTYCIVPTTRGKERSRRIGDILRE 183

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
           V+ ++ DGVKE+ L  ++  AYG+D+G V    LL A VA +P  G   +R    +P  +
Sbjct: 184 VQFLVEDGVKEIHLIGQNVTAYGKDLGDVKFWELLQA-VASVP--GVERIRFTTGHPRDL 240

Query: 289 LEH-LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
            E  +K +A++   P V   LH+P+Q+GSD VL AM+R YT  ++   +D L + +P + 
Sbjct: 241 DEDTIKVMADL---PQVCEALHLPIQAGSDKVLQAMDRGYTQKEYLQKIDLLKKYIPDIA 297

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS-AVVKKR 406
           ++TDII GFPGET ED+ +TV +IKE ++ QV   ++ PRPGTPAA +    S   + K 
Sbjct: 298 LSTDIIVGFPGETYEDYLETVKVIKEVEYDQVFAFKYSPRPGTPAADIPMTESPETISKW 357

Query: 407 SRELTSVFE--AFTPYLGMEGRVERIWITEIAADG 439
             +L ++ +   F   L  EG+   + I E+  +G
Sbjct: 358 LNDLINIQKDITFKKNLSYEGKTVEVLIEEVNEEG 392


>gi|225850314|ref|YP_002730548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Persephonella
           marina EX-H1]
 gi|225646637|gb|ACO04823.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Persephonella marina
           EX-H1]
          Length = 438

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 128/348 (36%), Positives = 200/348 (57%), Gaps = 20/348 (5%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS-PSQSAMDTL--I 118
           Y++TFGC  N +DS+ MAG L   GY    + E+ADI L+NTC+V+  P Q  +  L   
Sbjct: 5   YIRTFGCQMNINDSQKMAGMLKTLGYEPARDWEDADIILVNTCSVREKPDQKVLSALGEF 64

Query: 119 AKCKSAKKPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-VR 172
            K K+ K   V  V GC+ Q  G   L++   V +V G   I  + +++EE L+G++ V 
Sbjct: 65  KKIKNKKPDAVIGVCGCLAQRAGYEILQKAPFVDMVFGTTNIHHLPKLLEEALQGNKAVE 124

Query: 173 LLHRKKLPALDL---PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           +L        +L   P VR N++   + +  GC   CTYC   + RG   S  +  ++  
Sbjct: 125 ILEDIDQNETELDKYPTVRENRYTAYVTVMRGCDKKCTYCIVPYTRGKERSRRIGEILQE 184

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
           V+ +I DGVKE+ L  ++  AYG+D+G V    LL A VA++  +G   +R    +P  +
Sbjct: 185 VQWLIDDGVKEIHLIGQNVTAYGKDLGDVRFVDLLYA-VADV--EGVERIRFTTGHPRDL 241

Query: 289 LEH-LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
            E  +K +AE+   P +   LH+P+Q+GSD +L AM R YT  ++   ++ L + +P + 
Sbjct: 242 DEETIKAMAEI---PQICEHLHLPIQAGSDRILKAMERGYTQKEYLEKIELLKKYIPDIS 298

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395
           ++TDII GFPGET ED+ +T+ ++KE ++ QV   ++ PRPGTPAA+M
Sbjct: 299 LSTDIIVGFPGETYEDYMETIKVLKEVEYDQVFAFKYSPRPGTPAAQM 346


>gi|354610327|ref|ZP_09028283.1| MiaB-like tRNA modifying enzyme [Halobacterium sp. DL1]
 gi|353195147|gb|EHB60649.1| MiaB-like tRNA modifying enzyme [Halobacterium sp. DL1]
          Length = 417

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 129/378 (34%), Positives = 196/378 (51%), Gaps = 31/378 (8%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D  + AD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHHQVDGPDAADVAILNTCTVVEKTERNMLRRAKEL 64

Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEE-----TLKGHEVRLLHR 176
           +S    L+V GC+     +    E V    V   D V E V       T  G E      
Sbjct: 65  ESETADLIVTGCMALAQGEEFRAENVD-AQVLHWDEVPEAVTNGECPTTTPGAE------ 117

Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
              P LD         + ILPI  GC+  C+YC TK A G + S  VE  V + R ++  
Sbjct: 118 ---PVLD-------GVIGILPIARGCMSNCSYCITKQATGRVDSPPVEENVEKARALVHA 167

Query: 237 GVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
           G KE+ ++ +DTG YG D G   LP LL+ I  E+  DG   +R+GM NP  +    +E+
Sbjct: 168 GAKEIRITGQDTGVYGWDNGDRKLPELLDRIATEI--DGDFRVRVGMANPGGVHGIREEL 225

Query: 296 AEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           AEV   H  +Y+FLH PVQSGSD VL  M R++ +  +  +V+T  + +    ++TD I 
Sbjct: 226 AEVFAEHDEIYNFLHAPVQSGSDDVLEDMRRQHEVEQYVDIVETFDDYLEEWTLSTDFIV 285

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-- 412
           GFP ETD D  Q++ L++E +  ++++++F  RPGT AA MK +     K RS+ ++   
Sbjct: 286 GFPTETDHDHEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGQTKKDRSKAMSDLK 345

Query: 413 ---VFEAFTPYLGMEGRV 427
              V EA    +G E RV
Sbjct: 346 MDVVAEAHEEMVGTERRV 363


>gi|448606159|ref|ZP_21658738.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
           sulfurifontis ATCC BAA-897]
 gi|445739576|gb|ELZ91083.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
           sulfurifontis ATCC BAA-897]
          Length = 429

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 128/374 (34%), Positives = 205/374 (54%), Gaps = 29/374 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +   L   G+   D  EEAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64

Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
           ++    L++ GC+   QG+ D +E EG+   I+    +   V   E    G  V      
Sbjct: 65  EAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
             P LD         V ILPI  GC+  C+YC TK A G + S +V+  V + R ++  G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168

Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
            KE+ ++ +DTG YG D G   LP LL+ I  E+  DG   +R+GM NP  +    +E+A
Sbjct: 169 AKELRITGQDTGVYGWDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226

Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
           +V  RH  +Y+F+H PVQSGSD VL  M R++ +  FR +V+T    +    ++TD I G
Sbjct: 227 DVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFRDIVETFDRELDYWTLSTDFIVG 286

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 412
           +P ETDED  +++ L++E +  +V++++F  RPGT AA +K +   + K+RS+E++    
Sbjct: 287 YPTETDEDHERSMELLREIRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346

Query: 413 --VFEAFTPYLGME 424
             V  A+   +G E
Sbjct: 347 DIVAAAYDEMVGTE 360


>gi|313125740|ref|YP_004036010.1| miab-like tRNA modifying enzyme [Halogeometricum borinquense DSM
           11551]
 gi|448285580|ref|ZP_21476821.1| miab-like tRNA modifying enzyme [Halogeometricum borinquense DSM
           11551]
 gi|312292105|gb|ADQ66565.1| MiaB-like tRNA modifying enzyme [Halogeometricum borinquense DSM
           11551]
 gi|445576216|gb|ELY30673.1| miab-like tRNA modifying enzyme [Halogeometricum borinquense DSM
           11551]
          Length = 417

 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 129/375 (34%), Positives = 199/375 (53%), Gaps = 25/375 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +   L   G+   +  EEAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESRAIESALRDAGHYRVEEPEEADVAIMNTCTVVEKTERNMLRRAKEL 64

Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           +     L++ GC  + QG    +E     I+    +   V   E    G           
Sbjct: 65  EEETADLIITGCMALAQGEEFHEEDVDAQILHWDDVPSAVTNGECPTPGPGTE------- 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S  VE  V + R ++  G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPPVEENVEKARALVHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   LP LL+ I +E+  +G   +R+GM NP  I    +E+ EV
Sbjct: 171 EIRITGQDTGVYGWDKGDRKLPELLDRICSEI--EGDFRVRLGMANPGGIHGIHEELVEV 228

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
             RH  +Y+F+H+PVQSGSD VL AM R++ +  F  +V+T  E +    ++TD I GFP
Sbjct: 229 FDRHDKLYNFIHLPVQSGSDTVLEAMRRQHRVDKFVEIVETFDETLDYWTLSTDFIVGFP 288

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
            ET+ D  Q++ L +E +  +V++++F  RPGT AA MK +   V K+RS+E++      
Sbjct: 289 TETEADHEQSMALFREVRPEKVNVTRFSKRPGTDAADMKGLGGTVKKERSKEMSELKMDI 348

Query: 413 VFEAFTPYLGMEGRV 427
           V EA+   +G   RV
Sbjct: 349 VAEAYESMIGETHRV 363


>gi|374629251|ref|ZP_09701636.1| MiaB-like tRNA modifying enzyme [Methanoplanus limicola DSM 2279]
 gi|373907364|gb|EHQ35468.1| MiaB-like tRNA modifying enzyme [Methanoplanus limicola DSM 2279]
          Length = 403

 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 198/351 (56%), Gaps = 27/351 (7%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           ++ +T+GC+ N +D+  +     + G  +   ++EAD  +INTCTV + ++ AM  + A 
Sbjct: 9   VHFETYGCTFNYADTGKLMDIALSQGCKVVP-ADEADTVVINTCTVVAQTERAM--IRAV 65

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
              + + +VV GC+P    +L       +  V+   R++  + E +  H  R+ H  +  
Sbjct: 66  QDYSDRDVVVTGCMPVVQAEL-------LRSVRPDIRII--LPEEIYRHSERIGHSVE-- 114

Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
                       V ++ +  GCLG+C+YC T+ ARG L S  V  +V     +I++GV E
Sbjct: 115 ----------GGVGVVQMGTGCLGSCSYCITRFARGELHSNPVADIVSETERLISEGVHE 164

Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
           + L+ +D  AYG D G NL  LL A+ AE+  +G   +R GM NP  +L +L EI +   
Sbjct: 165 IQLTGQDVSAYGYDNGENLGTLLKAM-AEV--EGEFEIRAGMMNPKTVLPYLDEIIDGFL 221

Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
              ++ F+H+PVQSGSD VLS M R YT +DF  +V    + VP ++++TD+I GFP E+
Sbjct: 222 SDKIFKFIHIPVQSGSDRVLSDMGRGYTSADFERIVTEFRKKVPDIRVSTDLIVGFPTES 281

Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
           +EDF +T+ ++K     +V+I++F  R  TPAA  K +P  + K+RSR LT
Sbjct: 282 EEDFKETLEMVKRVCPTKVNITRFSVRENTPAAEYKDMPDWIKKERSRALT 332


>gi|119719528|ref|YP_920023.1| RNA modification protein [Thermofilum pendens Hrk 5]
 gi|119524648|gb|ABL78020.1| RNA modification enzyme, MiaB family [Thermofilum pendens Hrk 5]
          Length = 428

 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 119/359 (33%), Positives = 196/359 (54%), Gaps = 21/359 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++TFGC  N+ +S  MA  L   G+ + ++ E AD+ ++NTC V+  +++ +   + +
Sbjct: 4   VYIETFGCWLNKGESNIMATLLKRRGHKVVESIENADVVILNTCAVRGDTETKIFRRLRE 63

Query: 121 CKSAKKP----LVVAGCV----PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
            +  ++     LVV+GC+    P+   D+      S+V    I+++ EVVE   K   VR
Sbjct: 64  LEELRQKRGFRLVVSGCLVNVRPKSILDVAP--SASLVEPDAIEKIPEVVESEDKLLIVR 121

Query: 173 LLH--RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGR 229
                R  LP            V ++PI  GCLG+C +C     RG  + SY ++ ++  
Sbjct: 122 QYKASRNVLPDYS------GGAVHVVPIESGCLGSCAFCIEWVTRGTGVKSYPIDVIIEN 175

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           VR  ++ G +E++L+ +D  AYG D+G NL  L+  I+ E+  DG   +R+GM  P  + 
Sbjct: 176 VRAAVSKGAREIFLTGQDVAAYGYDLGTNLYELVKRILEEV--DGEYRVRLGMMEPMLLG 233

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
             LK + E+ R   +Y + H+P QSG D VL  M R+YT+ +++ +V+T+        I 
Sbjct: 234 RFLKNLLELFRDERLYRYFHIPAQSGDDKVLRLMRRKYTVEEYKGIVNTIRGSGWKFSIV 293

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
           TDII GFPGE + +F  T+  ++E  F +VH++++  RP T    M  VP  V K+RSR
Sbjct: 294 TDIIVGFPGEGEAEFQNTLKFLREVMFDKVHVARYTFRPFTEGYVMSGVPEPVKKQRSR 352


>gi|448546026|ref|ZP_21626353.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
           BAA-646]
 gi|448548100|ref|ZP_21627444.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
           BAA-645]
 gi|448557123|ref|ZP_21632558.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
           BAA-644]
 gi|445703372|gb|ELZ55303.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
           BAA-646]
 gi|445714802|gb|ELZ66560.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
           BAA-645]
 gi|445714992|gb|ELZ66749.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
           BAA-644]
          Length = 429

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 204/377 (54%), Gaps = 29/377 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +   L   G+   D  EEAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64

Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
            +    L++ GC  + QG+ D +E EG+   I+    +   V   E    G  V      
Sbjct: 65  AAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
             P LD         V ILPI  GC+  C+YC TK A G + S +V+  V + R ++  G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168

Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
            KE+ ++ +DTG YG D G   LP LL+ I  E+  DG   +R+GM NP  +    +E+A
Sbjct: 169 AKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226

Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
            V  RH  +Y+F+H PVQSGSD VL  M R++ +  FR +V+T    +    ++TD I G
Sbjct: 227 AVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVG 286

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 412
           +P ETDED  +++ L++E +  +V++++F  RPGT AA +K +   + K+RS+E++    
Sbjct: 287 YPTETDEDHERSMELLREIRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346

Query: 413 --VFEAFTPYLGMEGRV 427
             V  A+   +G E  V
Sbjct: 347 DIVAAAYDEMVGTEREV 363


>gi|448344382|ref|ZP_21533293.1| MiaB-like tRNA modifying enzyme [Natrinema altunense JCM 12890]
 gi|445638501|gb|ELY91629.1| MiaB-like tRNA modifying enzyme [Natrinema altunense JCM 12890]
          Length = 417

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/388 (34%), Positives = 207/388 (53%), Gaps = 27/388 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D +EEAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
                 L + GC  + QG    +E +   + G  Q+    EV E    G E         
Sbjct: 65  ADETADLFITGCMALAQG----EEFDRADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S ++E  V + R +I  G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   L  LL AI      DG   +R+GM NP  +    +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGDRKLHRLLEAIC---EIDGDFRVRVGMANPKGVHGIREELAAV 227

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              H  +Y FLH PVQSGSD VL  M R++ ++++  VV+T  + +    ++TD I GFP
Sbjct: 228 FAEHDELYDFLHAPVQSGSDDVLGDMRRQHQVAEYVEVVETFDDYLDYWTLSTDFIVGFP 287

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
            ETD D  Q++ L++E +  ++++++F  RPGT AA MK +   V K+RS+E+++     
Sbjct: 288 TETDRDHEQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSAVKRDL 347

Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGI 440
           V +A+   +G E R + + + E  AD +
Sbjct: 348 VADAYADMVG-EVREDVLVVEEGTADSV 374


>gi|257387570|ref|YP_003177343.1| MiaB-like tRNA modifying enzyme [Halomicrobium mukohataei DSM
           12286]
 gi|257169877|gb|ACV47636.1| MiaB-like tRNA modifying enzyme [Halomicrobium mukohataei DSM
           12286]
          Length = 420

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 133/388 (34%), Positives = 209/388 (53%), Gaps = 29/388 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +++ +   L   G+   D  EEAD+ ++NTCTV   ++  M    A+ 
Sbjct: 5   HIETYGCTSNRGETQEIEQALREGGHYPADGPEEADVAILNTCTVLEKTERNM-LRRAEE 63

Query: 122 KSAKKP--LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV-RLLHRKK 178
             A+ P  LVV GC+      L + E           R  +V  E L   +V + +   +
Sbjct: 64  LDAETPGDLVVTGCMA-----LAQGEEF---------RAADVDAEVLHWDDVPQHVLNGE 109

Query: 179 LPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
            P +  D   V  +  V ILPI  GC+  C+YC TK A G + S +VE  V + R ++  
Sbjct: 110 CPTVTPDTETVL-DGVVGILPIARGCMSDCSYCITKQATGRIESPSVEENVEKARALVHA 168

Query: 237 GVKEVWLSSEDTGAYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
           G KE+ ++ +DTG YG D       LP LL  I  E+  DG   +R+GM NP  +    +
Sbjct: 169 GAKELRVTGQDTGVYGWDTNQGESLLPELLERICTEI--DGEFRVRVGMANPKGVHGVRE 226

Query: 294 EIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
           E+A V   H  +Y+FLH PVQSGSD VL+ M R++ + ++  VVDT  E +    ++TD 
Sbjct: 227 ELARVFAEHDELYNFLHAPVQSGSDDVLADMRRQHAVGEYVAVVDTFDEYLDYWTLSTDF 286

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
           I GFP ET+ DF Q++ L++E +  ++++++F  RPGT AA MK +   + K RS+ ++ 
Sbjct: 287 IVGFPSETESDFQQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGQIKKDRSKAMSE 346

Query: 413 VFEAFT--PYLGMEGRVERIWITEIAAD 438
           +    T   Y  M G  +R+ +TE   D
Sbjct: 347 LKMDVTGDAYEAMLGEQKRVLLTEDGTD 374


>gi|448565475|ref|ZP_21636342.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
           prahovense DSM 18310]
 gi|445715219|gb|ELZ66975.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
           prahovense DSM 18310]
          Length = 429

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 204/377 (54%), Gaps = 29/377 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +   L   G+   D  EEAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64

Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
           +S    L++ GC+   QG+ D +E EG+   I+    +   V   E    G  V      
Sbjct: 65  ESETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
             P LD         V ILPI  GC+  C+YC TK A G + S +V+  V + R ++  G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168

Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
            KE+ ++ +DTG YG D G   LP LL+ I  E+  DG   +R+GM NP  +    +E+A
Sbjct: 169 AKELRITGQDTGVYGWDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226

Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
            V   H  +Y+F+H PVQSGSD VL  M R++ +  FR +V+T    +    ++TD I G
Sbjct: 227 GVFAEHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELAYWTLSTDFIVG 286

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 412
           +P ETDED  +++ L++E +  +V++++F  RPGT AA +K +   + K+RS+E++    
Sbjct: 287 YPTETDEDHERSMELLREIRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346

Query: 413 --VFEAFTPYLGMEGRV 427
             V  A+   +G E  V
Sbjct: 347 DIVAAAYDEMVGTEREV 363


>gi|448440848|ref|ZP_21588846.1| MiaB-like tRNA modifying enzyme [Halorubrum saccharovorum DSM 1137]
 gi|445689756|gb|ELZ41982.1| MiaB-like tRNA modifying enzyme [Halorubrum saccharovorum DSM 1137]
          Length = 442

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 197/370 (53%), Gaps = 22/370 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T +++T+GCS N+ +S  +   L   G+   D  E+AD+ ++NTCTV   ++  M     
Sbjct: 3   TYHIETYGCSSNRGESREIERALRDGGHHPADGPEDADVAILNTCTVVEKTERNMLRRAE 62

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           + +     LVV GC+     ++ E   V      +I    EV    L G E   +     
Sbjct: 63  ELEDVTAELVVTGCMALAQGEMFEEAEVD----AEILHWDEVPSYVLNG-ECPTVTPDAE 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S +VE  V + R ++  G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   LP LL+ I      DG   +R+GM NP  I    +E+AEV
Sbjct: 171 EIRVTGQDTGVYGWDDGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAEV 227

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              +  +Y F+H PVQSGSD VL  M R++ +  FR +VDT  + +    ++TD I GFP
Sbjct: 228 FADNEELYDFIHAPVQSGSDEVLEDMRRQHRVEKFREIVDTFDDRLDHWTLSTDFIVGFP 287

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
            ETD+D  ++++L+ E +  ++++++F  RPGT AA MK +   + K+RS+ ++      
Sbjct: 288 TETDDDHERSMDLLAEVRPEKINVTRFSKRPGTDAAEMKGLGGTIKKERSKAMSELKMEV 347

Query: 413 VFEAFTPYLG 422
           V EA+   +G
Sbjct: 348 VGEAYESMVG 357


>gi|330506789|ref|YP_004383217.1| hypothetical protein MCON_0563 [Methanosaeta concilii GP6]
 gi|328927597|gb|AEB67399.1| conserved hypothetical protein [Methanosaeta concilii GP6]
          Length = 437

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/380 (33%), Positives = 197/380 (51%), Gaps = 40/380 (10%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++TFGC+ N  +S+ +A  L   G+ +    +EAD+ ++NTC V   ++  +   + +
Sbjct: 3   FYIETFGCTSNFGNSQDLAEALREMGH-IPSGLKEADMVIVNTCAVTERTERKILRRLRQ 61

Query: 121 CKSAKKPLVVAGC----VPQGSRDL---------KELEGVSIVGV-------------QQ 154
            +  +  LVVAGC    +PQ  + L          + +   I G+              Q
Sbjct: 62  LEGER--LVVAGCLAAAIPQSIQTLCCRGRLGPLSQGDAARIAGLFDGWLMPSQHMQSGQ 119

Query: 155 IDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHA 214
           +       EE L+   + +  R+  P          +   I+ +  GC G+C+YC    A
Sbjct: 120 LQSQNFQSEEMLRERHIAVHLRESSPG--------GESCGIVNVADGCNGSCSYCIVSKA 171

Query: 215 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 274
           RG L S  VE +V  V  +   G  E+ +S++DT A+G DIG +L  LL  +  E+P  G
Sbjct: 172 RGRLKSRPVEDVVLAVERLAQLGTAEIQISAQDTAAFGSDIGSDLAGLLETLT-EIP--G 228

Query: 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT 334
             MLR+GM NP         + E  + P +Y FLH+PVQSGSD +L  M R YT  +F  
Sbjct: 229 DFMLRVGMMNPDSARLIQNRLIEAFQSPKIYRFLHIPVQSGSDEILQRMGRVYTSDEFFE 288

Query: 335 VVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394
           +V       P + I TDII GFPGETD+DF ++++LI+  +  +V+I++F PRPGT AA 
Sbjct: 289 LVSAFRFAYPDISIITDIIVGFPGETDKDFEESMSLIERLQPDKVNITRFSPRPGTSAAS 348

Query: 395 MKKVPSAVVKKRSRELTSVF 414
           +  +P  + K RSRE+T ++
Sbjct: 349 LYDMPDRIKKDRSREMTRLW 368


>gi|448623042|ref|ZP_21669691.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
           denitrificans ATCC 35960]
 gi|445753550|gb|EMA04967.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
           denitrificans ATCC 35960]
          Length = 429

 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 204/374 (54%), Gaps = 29/374 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +   L   G+   D  EEAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64

Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
           ++    L++ GC+   QG+ D +E EG+   I+    +   V   E    G  V      
Sbjct: 65  EAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
             P LD         V ILPI  GC+  C+YC TK A G + S +V+  V + R ++  G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168

Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
            KE+ ++ +DTG YG D G   LP LL+ I  E+  DG   +R+GM NP  +    +E+A
Sbjct: 169 AKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226

Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
           +V  RH  +Y+F+H PVQSGSD VL  M R++ +  FR +V+T    +    ++TD I G
Sbjct: 227 DVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVG 286

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 412
           +P ETD D  +++ L++E +  +V++++F  RPGT AA +K +   + K+RS+E++    
Sbjct: 287 YPTETDADHERSMELLREIRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346

Query: 413 --VFEAFTPYLGME 424
             V  A+   +G E
Sbjct: 347 DIVAAAYEEMVGTE 360


>gi|448611787|ref|ZP_21662217.1| MiaB-like tRNA modifying enzyme [Haloferax mucosum ATCC BAA-1512]
 gi|445742548|gb|ELZ94042.1| MiaB-like tRNA modifying enzyme [Haloferax mucosum ATCC BAA-1512]
          Length = 430

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 122/372 (32%), Positives = 200/372 (53%), Gaps = 25/372 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +   L   G+   D  EEAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64

Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           +     L+V GC  + QG     E     I+    +   V   E    G  V        
Sbjct: 65  EQETADLIVTGCMALAQGDDFRNEDIDAQILHWDDVPTAVTNGECPTPGPGVE------- 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S +V+  V + R ++  G K
Sbjct: 118 PVLD-------GIVGILPIARGCMSNCSYCITKFATGRVDSPSVQENVEKARALVHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   LP LL+ I +E+  +G   +R+GM NP  +    +++A+V
Sbjct: 171 ELRITGQDTGVYGWDNGDRKLPELLDRICSEI--EGEFRVRVGMANPGGVHGIRQDLADV 228

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
             +H  +Y+F+H PVQSGSD VL  M R++ +  F+ +V+T  E +    ++TD I G+P
Sbjct: 229 FAKHDTLYNFIHAPVQSGSDEVLEHMRRQHRVDKFKEIVETFDETLDYWTLSTDFIVGYP 288

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
            ETDED  +++ L++E +  ++++++F  RPGT AA +K +   + K+RS+E++      
Sbjct: 289 TETDEDHERSMALLREIRPEKINVTRFSKRPGTDAADLKGLGGTIKKERSKEMSEAKMDI 348

Query: 413 VFEAFTPYLGME 424
           V  A+   +G E
Sbjct: 349 VAAAYEDMVGTE 360


>gi|336121828|ref|YP_004576603.1| MiaB-like tRNA modifying protein [Methanothermococcus okinawensis
           IH1]
 gi|334856349|gb|AEH06825.1| MiaB-like tRNA modifying enzyme [Methanothermococcus okinawensis
           IH1]
          Length = 428

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 129/404 (31%), Positives = 209/404 (51%), Gaps = 25/404 (6%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           IY++ +GC+ N +D+  +   +  F  + +  N E+AD+ +INTC V+  ++  M + I 
Sbjct: 4   IYIEGYGCTLNAADTIIIKNSIVTFKDFQIVQNPEDADVVIINTCAVRLETEHKMISRIK 63

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEE-TLKGH-------EV 171
             KS  K +VVAGC+P+  R+  E  G  ++  ++     ++V + T   H         
Sbjct: 64  HFKSLNKKVVVAGCMPKALREKVEDIGDVLIMPKEAHLSGKIVHDYTTYNHCNIGGNNNS 123

Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
            +    KL  L  P    N  +  LPI+ GC+G CTYC  K ARG L SY    L+ +  
Sbjct: 124 NVDIDDKLKYL-TPTNPENSLIMPLPISEGCIGKCTYCIVKVARGRLISYNRNLLIKKAE 182

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
             I  GVK + ++S+DT  YG D    LP L+N I +    DG   +RIGM +   + + 
Sbjct: 183 EFINKGVKHILITSQDTACYGFDKNDTLPNLINDIAS---IDGEFDMRIGMMHAKNVTQI 239

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           + E+    ++  V  FLH+P+QSG D VL  M R YT+ +F  +V+     V  +   TD
Sbjct: 240 MDELIASYQNDKVSKFLHLPIQSGDDKVLKDMKRGYTVDEFIDIVNEFKRKVKDLNFNTD 299

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS---- 407
           +I GFP E +E+F  T+ ++K+     +H +++  R  T AA++K+V + V KKRS    
Sbjct: 300 VIVGFPTEKEENFENTLEVLKKLNPDYIHGAKYTQRRHTEAAKLKQVDTKVRKKRSEILD 359

Query: 408 ---RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
              REL+  ++    Y+   G+  ++ ITE      H  ++ +F
Sbjct: 360 KLRRELS--YKNNKNYI---GKTLKVLITENNKGIAHNCKVVKF 398


>gi|351710010|gb|EHB12929.1| CDK5 regulatory subunit-associated protein 1-like 1 [Heterocephalus
           glaber]
          Length = 279

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 86/136 (63%), Positives = 115/136 (84%)

Query: 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
           MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD+VL  M REY ++DF+ VV
Sbjct: 1   MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCMADFKRVV 60

Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396
           D L + VPG+ IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M+
Sbjct: 61  DFLKKKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKME 120

Query: 397 KVPSAVVKKRSRELTS 412
           +VP+ V+ ++ + L +
Sbjct: 121 QVPTQVIGEKQKVLVT 136


>gi|390938904|ref|YP_006402642.1| MiaB family RNA modification protein [Desulfurococcus fermentans
           DSM 16532]
 gi|390192011|gb|AFL67067.1| RNA modification enzyme, MiaB family [Desulfurococcus fermentans
           DSM 16532]
          Length = 432

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 125/374 (33%), Positives = 202/374 (54%), Gaps = 36/374 (9%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++T+GC+ N+SD   M   +   G+ L ++ E+AD ++INTC V+  ++  M   I +
Sbjct: 3   VYIETYGCALNKSDEALMVESILREGHVLVNSIEDADTFIINTCIVRLDTEYHMVKRIRE 62

Query: 121 ----CKSAKKPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
                    K L+VAGC+ +      LK     S+V  Q    + EV++           
Sbjct: 63  LYEVASRTGKKLIVAGCMAKAEPYTVLKIAPEASLVSPQNSALITEVLKT---------- 112

Query: 175 HRKKLPALDLPKVRRNKFVEI------LPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
            R K+  +D  + R    + +      +PI  GCL  C++C TKHAR  L S++++++V 
Sbjct: 113 -RGKIVLIDGLRERDRIGIHVEDRIAPIPIQEGCLSDCSFCITKHARRILVSHSIDAVVK 171

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
            V   + +G  E+ L+  D G YG D+     LP L+  +   +   G  M+RIGM NP 
Sbjct: 172 AVERAVRNGAVEIQLTGMDLGTYGLDLYKTRKLPELVKEVSRRVS--GEYMVRIGMINP- 228

Query: 287 FILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
              EHL+ I + L         VY FLH+P+QSGS+ VLS M R Y++ ++  +V+ +  
Sbjct: 229 ---EHLRHILDDLIDAINESSKVYRFLHIPLQSGSNKVLSVMRRNYSVEEYIEIVNEVKS 285

Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
            +PG+ IATDII G P E +EDF++T+ +I+E +F +VH++ +  RP T +A + +VP+ 
Sbjct: 286 RIPGVSIATDIIVGHPMEDEEDFSETLKVIRELEFERVHLAGYSIRPLTYSASLPQVPTR 345

Query: 402 VVKKRSRELTSVFE 415
           V K+R      V E
Sbjct: 346 VKKERVLRALQVIE 359


>gi|448600667|ref|ZP_21656046.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
           alexandrinus JCM 10717]
 gi|445734680|gb|ELZ86236.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
           alexandrinus JCM 10717]
          Length = 429

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 128/374 (34%), Positives = 201/374 (53%), Gaps = 29/374 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +   L   G+   D  EEAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64

Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
            +    L++ GC+   QG+ D +E EG+   I+    +   V   E    G  V      
Sbjct: 65  AAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
             P LD         V ILPI  GC+  C+YC TK A G + S +VE  V + R ++  G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAG 168

Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
            KE+ ++ +DTG YG D G   LP LL+ I  E+  DG   +R+GM NP  +     E+A
Sbjct: 169 AKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIRDELA 226

Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
            V  RH  +Y+F+H PVQSGSD VL  M R++ +  FR +V+T    +    ++TD I G
Sbjct: 227 AVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVG 286

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 412
           +P ETD D  +++ L++E +  +V++++F  RPGT AA +K +   + K+RS+E++    
Sbjct: 287 YPTETDADHERSMELLREVRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346

Query: 413 --VFEAFTPYLGME 424
             V  A+   +G E
Sbjct: 347 DIVAAAYDEMVGTE 360


>gi|448311468|ref|ZP_21501229.1| MiaB-like tRNA modifying protein [Natronolimnobius innermongolicus
           JCM 12255]
 gi|445604799|gb|ELY58741.1| MiaB-like tRNA modifying protein [Natronolimnobius innermongolicus
           JCM 12255]
          Length = 417

 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 131/387 (33%), Positives = 207/387 (53%), Gaps = 25/387 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D  +EAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
             A   L V GC+   QG    +E     + G  Q+    EV E    G E         
Sbjct: 65  SEATADLYVTGCMALAQG----EEFARADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAD 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TKHA G + S  +E  V + R +I  G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPPIEENVEKARALIHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
           E+ ++ +DTG YG D G      L A + EL  +G   +R+GM NP  +    +E+A+V 
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADVF 228

Query: 300 R-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
             +  +Y FLH PVQSGSD VL  M R++ +S++  V+D   + +    ++TD I GFP 
Sbjct: 229 AAYDELYDFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIDAFDDALEYWTLSTDFIVGFPT 288

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----V 413
           ETD D +Q++ L++E +  +V++++F  RPGT AA MK +   + K+RS+E+++     V
Sbjct: 289 ETDRDHDQSMALLRETRPEKVNVTRFSKRPGTDAADMKGLGGTIKKERSKEMSAAKREIV 348

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGI 440
            EA+   +G E R + + + +  AD +
Sbjct: 349 GEAYEAMVG-ERRDDCLVVEDGTADSV 374


>gi|389848049|ref|YP_006350288.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
 gi|448618147|ref|ZP_21666492.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
 gi|388245355|gb|AFK20301.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
 gi|445747702|gb|ELZ99157.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
          Length = 430

 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 201/375 (53%), Gaps = 25/375 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +   L   G+   D  EEAD+ ++N+CTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNSCTVVEKTERNMLRRAKEL 64

Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           +     L+V GC+   QG    +E     I+    +   V   E    G  V        
Sbjct: 65  EQETADLIVTGCMALAQGDDFREEDIDAQILHWDDVPTAVTNGECPTPGPGVE------- 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S +VE  V + R ++  G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   LP LL+ I +E+  +G   +R+GM NP  +    +E+A+V
Sbjct: 171 ELRITGQDTGVYGWDKGDRKLPELLDRICSEI--EGDFRVRVGMANPGGVHGIRQELADV 228

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              H  +Y+F+H PVQSGSD VL  M R++ +  F+ +V+T  E +    ++TD I G+P
Sbjct: 229 FAEHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFKEIVETFDETLDYWTLSTDFIVGYP 288

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
            ETDED  ++++L++E    ++++++F  RPGT AA +K +   + K+RS+E++      
Sbjct: 289 TETDEDHAKSMDLLREVHPEKINVTRFSKRPGTDAADLKGLGGTIKKERSKEMSETKMDI 348

Query: 413 VFEAFTPYLGMEGRV 427
           V  A+   +G E  V
Sbjct: 349 VAAAYEDMVGTEHDV 363


>gi|317490506|ref|ZP_07948986.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA]
 gi|316910399|gb|EFV32028.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA]
          Length = 452

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 130/383 (33%), Positives = 195/383 (50%), Gaps = 24/383 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  ++TFGC  N+ DSE +AG L   G    D  E+ADI    TC V+  + + +   +A
Sbjct: 2   TFCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADIVAFMTCCVREAADTRLYGQVA 61

Query: 120 KCKS---------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
             K+         +K+ + V GC+ Q  G + + EL+ + +V G   +  +  ++E  L+
Sbjct: 62  SLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALE 121

Query: 168 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
             GH+V +L        +LP  R +++   LPI +GC   C+YC   + RG   S  +E 
Sbjct: 122 EGGHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLED 181

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
           +V      +A GVKE+ L  ++  +YGRD+    P     + A L   G   LR   ++P
Sbjct: 182 IVAEAERYVAAGVKEITLLGQNVNSYGRDL-YGSPRFAQVLDA-LDQTGIERLRFATSHP 239

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             + + +      LR   +   LH+PVQSGSDAVL+AMNR YT   +R +V  L + VP 
Sbjct: 240 KDLNDEVVGRFATLR--SLMPALHLPVQSGSDAVLAAMNRRYTRDHYRALVAKLRDAVPD 297

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
           + ++TDII GFPGET +DF  T  L+ E  + QV    +  R GTPAA M    P  V++
Sbjct: 298 IALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPAASMDDDTPREVIQ 357

Query: 405 KRSRELTSV-----FEAFTPYLG 422
           +R   L  +     FEA    LG
Sbjct: 358 QRFDRLVDLVQQRAFEANQRDLG 380


>gi|448339730|ref|ZP_21528742.1| MiaB-like tRNA modifying enzyme [Natrinema pallidum DSM 3751]
 gi|445619146|gb|ELY72691.1| MiaB-like tRNA modifying enzyme [Natrinema pallidum DSM 3751]
          Length = 417

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 131/388 (33%), Positives = 207/388 (53%), Gaps = 27/388 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D +EEAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
                 L + GC  + QG    +E +   + G  Q+    EV E    G E         
Sbjct: 65  ADETADLFITGCMALAQG----EEFDRADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S ++E  V + R +I  G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   L  LL AI      DG   +R+GM NP  +    +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGDRKLHRLLEAIC---EIDGDFRVRVGMANPKGVHGIREELAAV 227

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              +  +Y FLH PVQSGSD VL  M R++ ++++  VV+T  + +    ++TD I GFP
Sbjct: 228 FAEYDELYDFLHAPVQSGSDDVLGDMRRQHQVAEYVEVVETFDDYLDYWTLSTDFIVGFP 287

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
            ETD D  Q++ L++E +  ++++++F  RPGT AA MK +   V K+RS+E+++     
Sbjct: 288 TETDRDHEQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSAVKRDL 347

Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGI 440
           V +A+   +G E R + + + E  AD +
Sbjct: 348 VADAYADMVG-EVREDVLVVEEGTADSV 374


>gi|433423456|ref|ZP_20406225.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp.
           BAB2207]
 gi|432198354|gb|ELK54647.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp.
           BAB2207]
          Length = 429

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 202/374 (54%), Gaps = 29/374 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +   L   G+   D  EEAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64

Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
            +    L++ GC+   QG+ D +E EG+   I+    +   V   E    G  V      
Sbjct: 65  AAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
             P LD         V ILPI  GC+  C+YC TK A G + S +V+  V + R ++  G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168

Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
            KE+ ++ +DTG YG D G   LP LL+ I  E+  DG   +R+GM NP  +    +E+A
Sbjct: 169 AKELRITGQDTGVYGWDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226

Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
            V  RH  +Y+F+H PVQSGSD VL  M R++ +  FR +V+T    +    ++TD I G
Sbjct: 227 AVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVG 286

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 412
           +P ETD D  +++ L++E +  +V++++F  RPGT AA +K +   + K+RS+E++    
Sbjct: 287 YPTETDADHERSMELLREVRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346

Query: 413 --VFEAFTPYLGME 424
             V  A+   +G E
Sbjct: 347 DIVAAAYDEMVGTE 360


>gi|292656724|ref|YP_003536621.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
           DS2]
 gi|448290728|ref|ZP_21481874.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
           DS2]
 gi|291371073|gb|ADE03300.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
           DS2]
 gi|445578099|gb|ELY32514.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
           DS2]
          Length = 429

 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 124/382 (32%), Positives = 201/382 (52%), Gaps = 45/382 (11%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +   L   G+   D  EEAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64

Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
            +    L++ GC+   QG+ D +E                       +G + ++LH   +
Sbjct: 65  AAETADLIITGCMALAQGN-DFRE-----------------------EGIDAQILHWDDV 100

Query: 180 PALDL--------PKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           PA           P V    +  V ILPI  GC+  C+YC TK A G + S +V+  V +
Sbjct: 101 PAAVTNGECPTPGPGVEPVLDGVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEK 160

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            R ++  G KE+ ++ +DTG YG D G   LP LL+ I  E+  DG   +R+GM NP  +
Sbjct: 161 ARALVHAGAKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGV 218

Query: 289 LEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
                E+A V  RH  +Y+F+H PVQSGSD VL  M R++ +  FR +V+T    +    
Sbjct: 219 HGIRDELAAVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWT 278

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           ++TD I G+P ETD D  +++ L++E +  +V++++F  RPGT AA +K +   + K+RS
Sbjct: 279 LSTDFIVGYPTETDADHERSMELLREVRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERS 338

Query: 408 RELTS-----VFEAFTPYLGME 424
           +E++      V  A+   +G E
Sbjct: 339 KEMSEAKMDIVAAAYDEMVGTE 360


>gi|222480620|ref|YP_002566857.1| MiaB-like tRNA modifying enzyme [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453522|gb|ACM57787.1| MiaB-like tRNA modifying enzyme [Halorubrum lacusprofundi ATCC
           49239]
          Length = 434

 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 190/356 (53%), Gaps = 17/356 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T +++T+GCS N+ +S  +   L   G+   D  E+AD+ ++NTCTV   ++  M     
Sbjct: 3   TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           + +     LVV GC+     D     GV      +I    EV    L G E   +     
Sbjct: 63  ELEDVTAELVVTGCMALAQGDAFREAGVD----AEILHWDEVPSHVLNG-ECPTVTPDAE 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S TVE  V + R ++  G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPTVEENVEKARALVHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   LP LL+ I      DG   +R+GM NP  I    +E+AEV
Sbjct: 171 EIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGDFRVRLGMANPGGIHGIHEELAEV 227

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              +  +Y F+H PVQSGSD VL  M R++ +  FR VV+T  + +    ++TD I GFP
Sbjct: 228 FADNEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGFP 287

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
            ET+ D  ++++L+ E +  ++++++F  RPGT AA MK +   + K+RS+ ++ +
Sbjct: 288 TETEADHERSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKAMSEL 343


>gi|448583429|ref|ZP_21646785.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax gibbonsii
           ATCC 33959]
 gi|445729658|gb|ELZ81253.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax gibbonsii
           ATCC 33959]
          Length = 429

 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 127/377 (33%), Positives = 203/377 (53%), Gaps = 29/377 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +   L   G+   D  EEAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64

Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
           ++    L++ GC+   QG+ D +E EG+   I+    +   V   E    G  V      
Sbjct: 65  EAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
             P LD         V ILPI  GC+  C+YC TK A G + S +V+  V + R ++  G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168

Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
            KE+ ++ +DTG YG D G   LP LL+ I  E+  DG   +R+GM NP  +    +E+A
Sbjct: 169 AKELRITGQDTGVYGWDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226

Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
            V   H  +Y+F+H PVQSGSD VL  M R++ +  FR + +T    +    ++TD I G
Sbjct: 227 AVFAEHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIAETFDRELAYWTLSTDFIVG 286

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 412
           +P ETDED  +++ L++E +  +V++++F  RPGT AA +K +   + K+RS+E++    
Sbjct: 287 YPTETDEDHERSMELLREIRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346

Query: 413 --VFEAFTPYLGMEGRV 427
             V  A+   +G E  V
Sbjct: 347 DIVAAAYDEMVGTEREV 363


>gi|429217568|ref|YP_007175558.1| MiaB-like tRNA modifying enzyme [Caldisphaera lagunensis DSM 15908]
 gi|429134097|gb|AFZ71109.1| MiaB-like tRNA modifying enzyme [Caldisphaera lagunensis DSM 15908]
          Length = 447

 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 117/373 (31%), Positives = 202/373 (54%), Gaps = 19/373 (5%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           Y++TFGC+ ++ DS  M   LS  GY  T+   +ADI ++NTC V+  +++ +   + + 
Sbjct: 17  YIETFGCALSEFDSSTMDSILSQNGYVKTEYPNDADIIIVNTCAVRLDTEAKIMKRLNEI 76

Query: 122 KS--AKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH-R 176
           K+      L+V+GC+ +       + +   S+V  Q   ++++VV+     ++V L+   
Sbjct: 77  KNYYGNARLIVSGCLAKARPSFISRVVPNASLVSPQNSTKILDVVKSE---NKVVLIEGN 133

Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
           +    +  P +  +  V  + I  GC+  C++C TK AR  L SY    ++  ++ ++  
Sbjct: 134 RDTDFMPTPPIEDS--VATIMIEEGCVDNCSFCITKLARQTLKSYKPRVILDTIKKLVEK 191

Query: 237 GVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
           GVKE+ L+ +D  AYG D      L  L+N I+ ++   G   +RIGM  P   +E +  
Sbjct: 192 GVKEIRLTGQDIAAYGLDFNPKFRLDELINIILDKIK--GEYRIRIGMMTPDKSIEIIDN 249

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           + E+ +   ++ F H+PVQSG + +L  MNR Y++ +++ + + +    P    ATDII 
Sbjct: 250 LLELYKDERIFKFFHIPVQSGDNNMLKIMNRNYSIEEYKYLHNKIKSKYPNSLFATDIIV 309

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
           G PGE +E F  TV L+KE +F +V+++Q+  RP T AA M++VP  + KKRS  L  V 
Sbjct: 310 GHPGENEEAFQNTVKLVKELRFERVYLAQYSIRPRTKAASMEQVPEVIKKKRSLMLNKVI 369

Query: 415 -----EAFTPYLG 422
                E +  Y+G
Sbjct: 370 KEIEEEIYKNYIG 382


>gi|325831353|ref|ZP_08164607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eggerthella sp. HGA1]
 gi|325486607|gb|EGC89055.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eggerthella sp. HGA1]
          Length = 459

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 130/383 (33%), Positives = 195/383 (50%), Gaps = 24/383 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  ++TFGC  N+ DSE +AG L   G    D  E+ADI    TC V+  + + +   +A
Sbjct: 9   TFCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADIVAFMTCCVREAADTRLYGQVA 68

Query: 120 KCKS---------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
             K+         +K+ + V GC+ Q  G + + EL+ + +V G   +  +  ++E  L+
Sbjct: 69  SLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALE 128

Query: 168 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
             GH+V +L        +LP  R +++   LPI +GC   C+YC   + RG   S  +E 
Sbjct: 129 EGGHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLED 188

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
           +V      +A GVKE+ L  ++  +YGRD+    P     + A L   G   LR   ++P
Sbjct: 189 IVAEAERYVAAGVKEITLLGQNVNSYGRDL-YGSPRFAQVLDA-LDQTGIERLRFATSHP 246

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             + + +      LR   +   LH+PVQSGSDAVL+AMNR YT   +R +V  L + VP 
Sbjct: 247 KDLNDEVVGRFATLR--SLMPALHLPVQSGSDAVLAAMNRRYTRDHYRALVAKLRDDVPD 304

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
           + ++TDII GFPGET +DF  T  L+ E  + QV    +  R GTPAA M    P  V++
Sbjct: 305 IALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPAASMDDDTPREVIQ 364

Query: 405 KRSRELTSV-----FEAFTPYLG 422
           +R   L  +     FEA    LG
Sbjct: 365 QRFDRLVDLVQQRAFEANQRDLG 387


>gi|448569031|ref|ZP_21638443.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
           lucentense DSM 14919]
 gi|445725181|gb|ELZ76806.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
           lucentense DSM 14919]
          Length = 429

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 201/374 (53%), Gaps = 29/374 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +   L   G+   D  EEAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64

Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
            +    L++ GC+   QG+ D +E EG+   I+    +   V   E    G  V      
Sbjct: 65  AAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
             P LD         V ILPI  GC+  C+YC TK A G + S +V+  V + R ++  G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168

Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
            KE+ ++ +DTG YG D G   LP LL+ I  E+  DG   +R+GM NP  +     E+A
Sbjct: 169 AKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIRDELA 226

Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
            V  RH  +Y+F+H PVQSGSD VL  M R++ +  FR +V+T    +    ++TD I G
Sbjct: 227 AVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVG 286

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 412
           +P ETD D  +++ L++E +  +V++++F  RPGT AA +K +   + K+RS+E++    
Sbjct: 287 YPTETDADHERSMELLREVRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346

Query: 413 --VFEAFTPYLGME 424
             V  A+   +G E
Sbjct: 347 DIVAAAYDEMVGTE 360


>gi|432332038|ref|YP_007250181.1| MiaB-like tRNA modifying enzyme [Methanoregula formicicum SMSP]
 gi|432138747|gb|AGB03674.1| MiaB-like tRNA modifying enzyme [Methanoregula formicicum SMSP]
          Length = 418

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 195/370 (52%), Gaps = 34/370 (9%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           + ++T+GC +N  D+  +   L   G ++ D+ ++AD+ ++NTCTV  P++  M   ++ 
Sbjct: 23  VCIETYGCRYNFGDTAKLTEVLKHRGCSIADSVDDADVVIVNTCTVVGPTERRMLRRLSA 82

Query: 121 CKSAKKPLVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
            +   + L V GC+PQ  ++ +  +     +    I      V     G           
Sbjct: 83  LRD--RDLFVTGCMPQVQKEAILSVCDPGFIAPDAIQEWYRRVGTVAAGS---------- 130

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
                        V I+ +  GC G CTYC T+ ARG L S+ +  +  +V    A G  
Sbjct: 131 -------------VGIVQLAQGCNGTCTYCITRQARGPLRSFPLHEVRRQVAAYAACGAA 177

Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
           E+ L+++D  +YG+DIG++L  LLN I     P GS  +R+GM NP  +++ L  I +  
Sbjct: 178 EIQLTAQDVSSYGKDIGLSLAGLLNDIG---DPPGSYCIRVGMMNPATVMDDLDAIIDAF 234

Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
               ++ FLH+PVQSGSD +L  M R+YT+ DF  ++    +  P + + TD+I GFPGE
Sbjct: 235 SAERIFRFLHLPVQSGSDTILERMGRQYTVRDFCRIIAAFRKRYPEITVMTDMIAGFPGE 294

Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF-- 417
           T+EDF+ +++LI+  +  +V+++++  RP TP ++ K +  +V K RSR + S  E    
Sbjct: 295 TEEDFSASIDLIRRLRPNKVNVTRYSKRPFTPLSQEKDILDSVKKNRSRIMLSCSEQVYA 354

Query: 418 ---TPYLGME 424
               P+LG E
Sbjct: 355 EVNRPWLGRE 364


>gi|257063789|ref|YP_003143461.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Slackia heliotrinireducens DSM 20476]
 gi|256791442|gb|ACV22112.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Slackia heliotrinireducens DSM 20476]
          Length = 451

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 197/371 (53%), Gaps = 19/371 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           + Y+ T+GC  N+ DSE + G L A G   TD  E+++I +  TC V+  +   +   + 
Sbjct: 9   SFYVFTYGCQMNEHDSERIVGMLEACGAHRTDVFEDSEIVIFMTCCVREAADVRLRGQVN 68

Query: 120 KCKSA---------KKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
             K+          K+ + + GC+ Q  G + + ++  V +V G Q I+R+  ++   L 
Sbjct: 69  SIKNVPLPRTSELKKRVVCIGGCIGQRDGQQLIDDMHHVDVVFGTQNIERLPYLINGVLS 128

Query: 168 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
             GH   +       + DLP  R + +   LPI VGC   CTYC   + RG   S  +ES
Sbjct: 129 RGGHIAEVQEESDTFSTDLPSKREHDWAAWLPITVGCNNFCTYCIVPYVRGRERSRAIES 188

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
           +V   + ++A+GV+E+ L  ++  +YGRD+    P   + ++  +   G   LR   ++P
Sbjct: 189 VVADAQALVAEGVQEITLLGQNVNSYGRDL-YGEPRFAD-VLKGVAATGVPRLRFATSHP 246

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             + + + E    L +  +   LH+PVQSGSDA+L  M+R YT+  +  ++D L    P 
Sbjct: 247 KDLTDEVIEAFGTLGN--LMPALHLPVQSGSDAILKRMHRSYTVEHYLGLIDKLRAACPD 304

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
           + ++TDII GFPGET+EDF  T +L+++  + QV    + PR GTPAA+MK   P +V++
Sbjct: 305 ISLSTDIIVGFPGETEEDFQATYDLVEKVGYSQVFTFIYSPREGTPAAKMKDDTPRSVIQ 364

Query: 405 KRSRELTSVFE 415
           +R   L  + +
Sbjct: 365 ERFERLVQMVQ 375


>gi|218884393|ref|YP_002428775.1| MiaB family RNA modification protein [Desulfurococcus kamchatkensis
           1221n]
 gi|218766009|gb|ACL11408.1| RNA modification enzyme, MiaB family [Desulfurococcus kamchatkensis
           1221n]
          Length = 432

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 199/374 (53%), Gaps = 36/374 (9%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++T+GC+ N+SD   M   +   G+ L ++ E+AD  +INTC V+  ++  M   I +
Sbjct: 3   VYIETYGCALNKSDEALMVENILREGHELVNSIEDADTLIINTCIVRLDTEYHMVKRIRE 62

Query: 121 ----CKSAKKPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
                    K L+VAGC+ +      LK     S+V  Q    + EV++           
Sbjct: 63  LYEVASRTGKKLIVAGCMAKAEPYTVLKIAPEASLVSPQNSALITEVLKT---------- 112

Query: 175 HRKKLPALDLPKVRRNKFVEI------LPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
            R K+  +D  + R    + +      +PI  GCL  C++C TKHAR  L S+ ++++V 
Sbjct: 113 -RGKVILIDGLRERDRIGIHVEDRIAPIPIQEGCLSNCSFCITKHARRILVSHGIDAVVK 171

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
            V   + +G  E+ L+  D G YG D+     LP L+  +   +   G  M+RIGM NP 
Sbjct: 172 AVERAVRNGAVEIQLTGMDLGTYGLDLYKTRKLPELVKEVSRRV--SGEYMIRIGMINP- 228

Query: 287 FILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
              EHL+ I + L         VY FLH+P+QSGS+ VLS M R Y++ ++  +V+    
Sbjct: 229 ---EHLRYILDDLIDAINESSKVYRFLHIPLQSGSNKVLSVMRRNYSVEEYIEIVNEAKS 285

Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
            +PG+ IATDII G P E +EDFN+T+ +I+E +F +VH++ +  RP T +A + +VP+ 
Sbjct: 286 RIPGVSIATDIIVGHPMEDEEDFNETLKVIRELEFERVHLAGYSIRPLTYSASLPQVPTR 345

Query: 402 VVKKRSRELTSVFE 415
           V K+R      V E
Sbjct: 346 VKKERVLRALQVIE 359


>gi|397775943|ref|YP_006543489.1| MiaB-like tRNA modifying enzyme [Natrinema sp. J7-2]
 gi|397685036|gb|AFO59413.1| MiaB-like tRNA modifying enzyme [Natrinema sp. J7-2]
          Length = 417

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 130/389 (33%), Positives = 206/389 (52%), Gaps = 29/389 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D +EEAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGC--VPQGSR-DLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
                 L + GC  + QG   D  +++G       Q+    EV E    G E        
Sbjct: 65  ADETADLFITGCMALAQGEAFDRADVDG-------QVLHWDEVPEAVTNG-ECPTTTPDA 116

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
            P LD         V ILPI  GC+  C+YC TK A G + S ++E  V + R +I  G 
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGA 169

Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
           KE+ ++ +DTG YG D G   L  LL  I      DG   +R+GM NP  +    +E+A 
Sbjct: 170 KEIRITGQDTGVYGWDEGDRKLHRLLEEIC---EIDGDFRVRVGMANPKGVHGIREELAA 226

Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           V   H  +Y FLH PVQSGSD VL  M R++ ++++  VV+T  + +    ++TD I GF
Sbjct: 227 VFAEHDELYDFLHAPVQSGSDDVLGDMRRQHQVAEYVEVVETFDDYLDYWTLSTDFIVGF 286

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 412
           P ET+ D  Q++ L++E +  ++++++F  RPGT AA MK +   V K+RS+E+++    
Sbjct: 287 PSETERDHEQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSAVKRD 346

Query: 413 -VFEAFTPYLGMEGRVERIWITEIAADGI 440
            V +A+   +G E R + + + E  AD +
Sbjct: 347 LVADAYADMVG-EVREDVLVVEEGTADSV 374


>gi|448464159|ref|ZP_21598382.1| MiaB-like tRNA modifying enzyme [Halorubrum kocurii JCM 14978]
 gi|445815946|gb|EMA65863.1| MiaB-like tRNA modifying enzyme [Halorubrum kocurii JCM 14978]
          Length = 440

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 195/370 (52%), Gaps = 22/370 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T +++T+GCS N+ +S  +   L   G+   D  E+AD+ ++NTCTV   ++  M     
Sbjct: 3   TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           + +     LVV GC+     +  E  GV      +I    EV    L G E   +     
Sbjct: 63  ELEDETAELVVTGCMALAQGETFEEAGVD----AEILHWDEVPSYVLNG-ECPTVTPDAE 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S +VE  V + R ++  G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   LP LL+ I      DG   +R+GM NP  I    +E+ EV
Sbjct: 171 EIRVTGQDTGVYGWDDGDRKLPELLDRI---CDIDGEFRVRLGMANPGGIHGIHEELVEV 227

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              +  +Y F+H PVQSGSD VL  M R++ +  FR VV+T  + +    ++TD I GFP
Sbjct: 228 FADNEELYDFVHAPVQSGSDEVLEEMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGFP 287

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
            ET+ D  ++++L+ E +  ++++++F  RPGT AA MK +   V K+RS+ ++      
Sbjct: 288 TETEADHERSMDLLAEVRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKAMSELKMEV 347

Query: 413 VFEAFTPYLG 422
           V EA+   +G
Sbjct: 348 VGEAYESMVG 357


>gi|325295204|ref|YP_004281718.1| MiaB-like tRNA modifying enzyme [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065652|gb|ADY73659.1| MiaB-like tRNA modifying enzyme [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 437

 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 196/363 (53%), Gaps = 39/363 (10%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  N  ++ YM  Q    GY + D SEEADI+++NTCTV S + S     + K KS 
Sbjct: 8   TLGCKMNFHETAYMEEQFKKRGYKIVDFSEEADIYIVNTCTVTSVADSKSRKALRKAKSR 67

Query: 125 K-KPLVVA-GCV----PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
             K LVVA GC     P+    L+E++   I G  +  ++V++VE+ ++G         K
Sbjct: 68  NPKALVVATGCYSEVYPEKVEKLEEVD--FITGNVEKFQIVDIVEKRIEG---------K 116

Query: 179 LPALDLPKV-RRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVES 225
           LP L L  + + N+F  +            L I  GC   C+YC    ARG + S   E 
Sbjct: 117 LPRLYLRGIWKENQFYPLTIRHYEGKTRAFLKIQQGCELFCSYCIIPKARGKMLSEKPEK 176

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMT 283
           ++ +V+ +I  G KE+ L+    G YG D+   ++L  L+  IV ++P  G   LRI   
Sbjct: 177 VLEQVKELINSGYKEIVLTGTHLGGYGLDLEESLSLAKLIEKIV-KIP--GLYRLRISSV 233

Query: 284 NPPFILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
            P   +E   E+ EV+   P +   LH+P+QSGSD +L+ M R YT  D++T+V+ ++  
Sbjct: 234 EP---IEFSDELIEVVTSSPKIAPHLHIPLQSGSDRILNLMKRRYTKRDYKTIVERILSK 290

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
            P + I TD++ GFPGET+EDF +T   IKE+ F  +H+  + PR GT A +MK   S++
Sbjct: 291 NPDICIGTDVMVGFPGETEEDFEETKKFIKEFPFGYIHVFPYSPRKGTVAYKMKDSVSSL 350

Query: 403 VKK 405
            KK
Sbjct: 351 EKK 353


>gi|452207624|ref|YP_007487746.1| MiaB-like tRNA modifying enzyme [Natronomonas moolapensis 8.8.11]
 gi|452083724|emb|CCQ37039.1| MiaB-like tRNA modifying enzyme [Natronomonas moolapensis 8.8.11]
          Length = 414

 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 121/356 (33%), Positives = 193/356 (54%), Gaps = 19/356 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T +++T+GC+ N+ +S  +   L   G+   + + EAD+ ++NTCTV   ++  M     
Sbjct: 3   TYHIETYGCTSNRGESRRIERSLRDAGHRPVEGTAEADVAILNTCTVVEKTERNMLRRAE 62

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           + +S    L+V GC+      L + E  + + VQ +    E V   +   E         
Sbjct: 63  ELESETADLIVTGCMA-----LAQGEAFADLDVQVLH--WEDVPSAVTNGECPTTTPDAE 115

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S T+E+ V + R ++  G K
Sbjct: 116 PILD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPTIEANVEKARALVHAGAK 168

Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   LP LL+ I      DG   +R+GM NP  I    +E+A+V
Sbjct: 169 EIRVTGQDTGVYGWDTGERKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELADV 225

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              +  +Y F+H PVQSGSD VL AM R++ +  FR VVDT    +    ++TD I GFP
Sbjct: 226 FADNRKLYDFIHAPVQSGSDEVLEAMRRQHRVGKFREVVDTFEGRLDHWTLSTDFIVGFP 285

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
            ET+ DF +++ L+ + +  ++++++F  RPGT AA MK +   + K+RS+ ++ +
Sbjct: 286 TETEADFERSMALLADVRPEKINVTRFSKRPGTDAAEMKGLGGTIKKERSKAMSEL 341


>gi|448374494|ref|ZP_21558353.1| MiaB-like tRNA modifying enzyme [Halovivax asiaticus JCM 14624]
 gi|445659933|gb|ELZ12733.1| MiaB-like tRNA modifying enzyme [Halovivax asiaticus JCM 14624]
          Length = 417

 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 201/386 (52%), Gaps = 23/386 (5%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D  +EAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESRQIERRLRDAGHHRVDGVDEADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
                 L V GC+      L + E     GV       + V E +   E         P 
Sbjct: 65  ADETADLYVTGCMA-----LAQGEAFVNAGVDADVLHWDEVPEAVTNGECPTTTPDAEPI 119

Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 241
           LD         V ILPI  GC+  C+YC TKHA G + S ++E  V + R +I  G KE+
Sbjct: 120 LD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPSIEENVEKARALIHAGAKEL 172

Query: 242 WLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL- 299
            ++ +DTG YG D G   L  LL+ I      +G   +R+GM NP  +    +E+A V  
Sbjct: 173 RITGQDTGVYGWDDGERKLHRLLDRIC---DIEGDFRVRVGMANPKGVHGIREELASVFA 229

Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
            +  +Y FLH PVQSGSD VL  M R++ +S++  VV+T  + +P   ++TD I GFP E
Sbjct: 230 DNEELYDFLHAPVQSGSDDVLGDMRRQHQVSEYVEVVETFDDALPYWTLSTDFIVGFPTE 289

Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VF 414
           TD D  Q++ L++E +  ++++++F  RPGT AA MK +   + K+RS E++      V 
Sbjct: 290 TDHDHAQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSSEMSEVKRELVR 349

Query: 415 EAFTPYLGMEGRVERIWITEIAADGI 440
           EA+   +G E R + + + E   D +
Sbjct: 350 EAYADMVG-ETREDVLVVEEGTGDSV 374


>gi|121533678|ref|ZP_01665505.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
           Nor1]
 gi|121307669|gb|EAX48584.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
           Nor1]
          Length = 451

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 124/366 (33%), Positives = 199/366 (54%), Gaps = 20/366 (5%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ T+GC  N++DSE +AGQL   GY+ TD  E+AD+ LINTC V+  ++  +   I + 
Sbjct: 19  HIITYGCQMNENDSERLAGQLRGLGYSSTDQIEQADLILINTCCVRESAEKKIYGKIGEL 78

Query: 122 KSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--V 171
           K  K       + V GC+ Q  RD    +   V +V G   + ++ ++++E  +  +  +
Sbjct: 79  KRLKTVNPNLLIGVTGCLSQKDRDKIFTKAPHVDLVMGTHNVHQLTDLIKEISQSRDRVL 138

Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
            +  + +  A D+P VR+++    +PI  GC   CTYC   + RG   S  +  ++  VR
Sbjct: 139 AVWDQAERLAPDVPTVRKSQVSAWVPIMYGCNNFCTYCIVPYVRGRERSRPLADILAEVR 198

Query: 232 TVIADGVKEVWLSSEDTGAYGRD--IGVNLPILLNAIVAELPPDGSTMLRIG-MTNPPFI 288
            +  +G KE+ L  ++  +YG+D    ++   LL A+         T+ RI  MT+ P  
Sbjct: 199 QLGTEGFKEITLLGQNVNSYGKDGEETIDFADLLAAV-----DKVETIARIRYMTSHPRD 253

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           + + K IA +     +    H+PVQSGSD VL  MNR YT   +R +V+ +   +P   I
Sbjct: 254 M-NAKVIAVIKHGQRICEHFHLPVQSGSDIVLQRMNRGYTTEYYRKLVEKIRSEIPHASI 312

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
            TDII GFPGETDE F QT++ ++  +F   +   + PR GTPAA M  +VP A+ K+R 
Sbjct: 313 TTDIIVGFPGETDELFMQTLDFVRSIRFDAAYTFLYSPRSGTPAATMPDQVPLAIKKQRL 372

Query: 408 RELTSV 413
           ++L +V
Sbjct: 373 QQLMAV 378


>gi|448396870|ref|ZP_21569318.1| MiaB-like tRNA modifying protein [Haloterrigena limicola JCM 13563]
 gi|445673399|gb|ELZ25960.1| MiaB-like tRNA modifying protein [Haloterrigena limicola JCM 13563]
          Length = 417

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 132/388 (34%), Positives = 203/388 (52%), Gaps = 27/388 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D  +EAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHYRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
                 L + GC  + QG    +E     I G  Q+    EV E    G E         
Sbjct: 65  ADETADLFITGCMALAQG----EEFAQADIDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S ++E  V + R +I  G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   L  LL  I A    DG   +R+GM NP  I    +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEKICA---IDGDFRVRVGMANPKGIHGIREELADV 227

Query: 299 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              +  +Y FLH PVQSGSD VL  M R++ + ++  VVDT  + +    ++TD I GFP
Sbjct: 228 FAANDELYDFLHAPVQSGSDDVLGDMRRQHQVQEYLEVVDTFDDTLDYWTLSTDFIVGFP 287

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
            ETD D  Q++ L++E +  ++++++F  RPGT AA MK +   V K+RS+E++      
Sbjct: 288 TETDHDHAQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSDLKRDL 347

Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGI 440
           V +A+   +G   R + + + E  AD +
Sbjct: 348 VADAYAEMVGQR-RDDCLVVEEGTADSV 374


>gi|307354819|ref|YP_003895870.1| MiaB-like tRNA modifying protein [Methanoplanus petrolearius DSM
           11571]
 gi|307158052|gb|ADN37432.1| MiaB-like tRNA modifying enzyme [Methanoplanus petrolearius DSM
           11571]
          Length = 404

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 35/355 (9%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I+++T+GC+ N +D+E +       G ++    E A+  +INTCTV + ++ AM  +IA+
Sbjct: 9   IHLETYGCTFNFADTEKIVRVAEKQGCSIVPPGE-AEAVIINTCTVVAQTERAMLRVIAE 67

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLLHR 176
                K + V GC+     DL  + GV     ++  + ++R  E +   + G        
Sbjct: 68  FPD--KEIYVTGCMAVVQPDL--IYGVRPDARLILPEDLNRCPETIGSLVDGS------- 116

Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
                             I+    GC+  C YC T+ ARG L S+  + ++  +  +++ 
Sbjct: 117 ----------------TGIVQTARGCVSRCAYCITRSARGRLRSFPEDKIIEEIERLVSA 160

Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
           G  E+ L+ +D  AYG D G +LP LLN I +    +G  M+R+GM NP   +    E++
Sbjct: 161 GAVEIQLTGQDLSAYGMDTGSSLPDLLNRINS---LEGEFMVRVGMMNPSTAIPLTDELS 217

Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           +      ++SF H+PVQSGSD VLS M R Y + DFR +V  L +  PG++I+TD I G+
Sbjct: 218 DAFLGEKIFSFAHLPVQSGSDKVLSDMKRGYQVQDFRNLVAELRKKDPGIRISTDFIVGY 277

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
           P ET+EDF +T+ L++E +  +V+I++F  R GT AA++K +P  + K+RSR LT
Sbjct: 278 PTETEEDFLKTLALLEEIRPTKVNITRFSAREGTDAAKLKDIPDWIKKERSRALT 332


>gi|322372210|ref|ZP_08046751.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haladaptatus
           paucihalophilus DX253]
 gi|320548219|gb|EFW89892.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haladaptatus
           paucihalophilus DX253]
          Length = 417

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 122/375 (32%), Positives = 201/375 (53%), Gaps = 25/375 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +   L   G+   +  E+AD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESRQIESALRDAGHYRVEGPEQADVAIMNTCTVVEKTERNMVRRAKEL 64

Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           +S    L++ GC+   QG     E     I+    +   V   E    G  V        
Sbjct: 65  QSETADLIITGCMALAQGDEFRTEDVDAQIMHWDDVPTAVTNGECPTPGPGVE------- 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TKHA G + S +VE  V + R ++  G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPSVEENVEKARALVHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   L +LL+ I  E+  +G   +R+GM NP  +    +E+A+V
Sbjct: 171 ELRITGQDTGVYGWDRGERKLHVLLDRICNEI--EGDFRVRVGMANPKGVHGIREELAQV 228

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              +  +Y+F+H PVQSGS+ VL  M R++ + ++  +V+T  E +    ++TD I GFP
Sbjct: 229 FAENDELYNFIHAPVQSGSNDVLGDMRRQHQVEEYVEIVETFDEYLDYWTLSTDFIVGFP 288

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
            ETD+D  Q++ L++E +  ++++++F  RP T AA+MK +     K+RS+E++      
Sbjct: 289 TETDDDHEQSMALLRETRPEKLNVTRFSKRPNTDAAKMKGLGGTKKKERSKEMSELKMDI 348

Query: 413 VFEAFTPYLGMEGRV 427
           V  A+   +G E RV
Sbjct: 349 VGAAYDEMVGTEKRV 363


>gi|403252571|ref|ZP_10918880.1| hypothetical protein EMP_02309 [Thermotoga sp. EMP]
 gi|402812061|gb|EJX26541.1| hypothetical protein EMP_02309 [Thermotoga sp. EMP]
          Length = 434

 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 127/357 (35%), Positives = 196/357 (54%), Gaps = 19/357 (5%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T+ ++TFGC  NQ +SEYMA QL   GY +  +   A  +++N+C V    +  +  LI
Sbjct: 2   KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGNAA-YYIVNSCAVTKEVEKKVKRLI 60

Query: 119 AKCKSAKK--PLVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
              ++  K   +++ GC  Q S D  K L    I+G+ +   +V+ +  +L G +  ++ 
Sbjct: 61  KSIRNRNKNAKIILTGCFAQLSPDEAKNLPVDMILGIDEKKHIVDHIN-SLNGKQQVVVS 119

Query: 176 RKKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVR 231
               P  +  KV+    ++    + +  GC   CTYC  + ARG  + S  +E       
Sbjct: 120 EPGRPVYE--KVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEEFA 177

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
            ++  G KE+ ++  + G YG+D+G +L  LL  IV E+P  G   +R+   N   + + 
Sbjct: 178 EMVMKGYKEIVITGVNLGKYGKDMGSSLAELLR-IVEEIP--GDYRVRLSSINVEDVND- 233

Query: 292 LKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
             EI E   R+P +   LH+ VQSGSD VL  M R+Y +SDF  VVD L  + P   I T
Sbjct: 234 --EIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYRISDFMRVVDKLRSIDPDFSITT 291

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           DII GFPGETD DF +T+ L+++ +F +VHI +F PRPGTPA+RM+  VP +  K+R
Sbjct: 292 DIIVGFPGETDADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVPESKKKER 348


>gi|257791365|ref|YP_003181971.1| MiaB family RNA modification protein [Eggerthella lenta DSM 2243]
 gi|257475262|gb|ACV55582.1| RNA modification enzyme, MiaB family [Eggerthella lenta DSM 2243]
          Length = 459

 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 128/383 (33%), Positives = 194/383 (50%), Gaps = 24/383 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  ++TFGC  N+ DSE +AG L   G    D  E+AD+    TC V+  + + +   +A
Sbjct: 9   TFCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADVVAFMTCCVREAADTRLYGQVA 68

Query: 120 KCKS---------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
             K+         +K+ + V GC+ Q  G + + EL+ + +V G   +  +  ++E  L+
Sbjct: 69  SLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALE 128

Query: 168 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
              H+V +L        +LP  R +++   LPI +GC   C+YC   + RG   S  +E 
Sbjct: 129 EGSHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLED 188

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
           +V      +A GVKE+ L  ++  +YGRD+    P     + A L   G   LR   ++P
Sbjct: 189 IVAEAERYVAAGVKEITLLGQNVNSYGRDL-YGSPRFAQVLDA-LDQTGIERLRFATSHP 246

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             + + +      LR   +   LH+PVQSGSDAVL+AMNR YT   +R +V  L + VP 
Sbjct: 247 KDLNDEVVGRFATLR--SLMPALHLPVQSGSDAVLAAMNRRYTRDHYRALVAKLRDAVPD 304

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
           + ++TDII GFPGET +DF  T  L+ E  + QV    +  R GTPAA M    P  V++
Sbjct: 305 IALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPAASMDDDTPREVIQ 364

Query: 405 KRSRELTSV-----FEAFTPYLG 422
           +R   L  +     FEA    LG
Sbjct: 365 QRFDRLVDLVQQRAFEANQRDLG 387


>gi|88603600|ref|YP_503778.1| MiaB-like tRNA modifying enzyme [Methanospirillum hungatei JF-1]
 gi|88189062|gb|ABD42059.1| MiaB-like tRNA modifying enzyme [Methanospirillum hungatei JF-1]
          Length = 428

 Score =  194 bits (492), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 127/394 (32%), Positives = 204/394 (51%), Gaps = 36/394 (9%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I ++TFGC++N  DS+ +A  L+A G  +  + E A++ +INTC V + ++  M   I+ 
Sbjct: 31  ICIRTFGCAYNVGDSDLLASVLTASGSVIVSDPELAEVMIINTCIVIASTERKMLKEISS 90

Query: 121 CKSAKKPLVVAGCVPQG-SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
               +  + V GC+P      L+E   V ++    I R    V    KG           
Sbjct: 91  YPDHE--VYVTGCLPLALPESLQEHTTVKLIHPDSIHRAAATVSYDQKGP---------- 138

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
                        V ++ I  GC+G+C YC T+ ARG + S +   +   + + +  G  
Sbjct: 139 -------------VSVVQIGPGCVGSCRYCITRCARGSIRSNSPHQIYSHIASCVRGGAV 185

Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ L+ +D  AYG D G  +L  LL  I A   PD  T +R+GM NP  +    + +A  
Sbjct: 186 EIRLAGQDLSAYGHDTGQWSLATLLEGIPAL--PD-ITRIRLGMMNPATLKPIAQRVART 242

Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
           + +   +SFLH+P+QSGSD VL  M R YT++D + ++D     +  + IATDII GFPG
Sbjct: 243 MNNGPFFSFLHLPIQSGSDHVLDLMGRGYTVADVQNIIDIFRAEMSDITIATDIITGFPG 302

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 418
           ETD+D  +TV LI+      V+++++  RPGT  +R  ++P  + K+RSR +  + E++T
Sbjct: 303 ETDDDHEETVRLIRRIAPGMVNVTRYSWRPGTGMSRDHELPDRIRKERSRAI--IRESYT 360

Query: 419 PYL----GMEGRVERIWITEIAADGIHLVRLEQF 448
            +      M+G V R+  TE    G  + R E++
Sbjct: 361 MFQKANEKMKGAVMRVIPTEQLKPGSVMARSERY 394


>gi|397906230|ref|ZP_10507046.1| MiaB family protein, possibly involved in tRNA or rRNA modification
           [Caloramator australicus RC3]
 gi|397160689|emb|CCJ34381.1| MiaB family protein, possibly involved in tRNA or rRNA modification
           [Caloramator australicus RC3]
          Length = 433

 Score =  194 bits (492), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 195/364 (53%), Gaps = 25/364 (6%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI--AKCK 122
           T GC  N  ++E MA      GY + D  + AD+++INTCTV +        +I  AK K
Sbjct: 8   TLGCRVNTYETEAMAETFIKNGYEVVDFDDYADVYVINTCTVTNIGDKKSRQMIRRAKKK 67

Query: 123 SAKKPLVVAGCVPQ-GSRDLKELEGVSI-VGVQQIDRVVEVVEETLKG-----HEVRLLH 175
           +    +V  GC  Q    +++++E V I VG +   ++VE V+E LK      H   ++ 
Sbjct: 68  NNDAVVVAVGCYVQVAPEEVEKIEDVDIIVGTKDKGKIVEFVDEYLKNRKRIKHVENVMS 127

Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
            +    L++ + + +K    L I  GC   C+YC   +ARG + S   E+++  V  +  
Sbjct: 128 IRHFEELEIDEYQ-DKTRAFLKIQDGCDRFCSYCLIPYARGPVRSRKPENILMEVEKLSR 186

Query: 236 DGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF----ILE 290
           +G KEV LS     +YG+D+  VNL  ++  I      +G   +RIG  +P F    I+E
Sbjct: 187 NGYKEVILSGIHVASYGKDLKDVNLIDVIEMIS---KVEGIERIRIGSVDPTFFNEEIIE 243

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
            LK I +   H       H+ +QSG D  L  MNR YT S+++ +VD L E+   + I T
Sbjct: 244 KLKYIDKFCHH------FHLSLQSGCDETLRRMNRHYTTSEYKKIVDNLREVFEDVSITT 297

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
           D+I GFPGETDE+F +T   +KE K  ++HI ++ PR GT AA  K +VP ++ ++RS++
Sbjct: 298 DVIVGFPGETDEEFERTFEFLKEIKLSKMHIFKYSPRKGTKAAEYKNQVPESIKEERSKK 357

Query: 410 LTSV 413
           L  +
Sbjct: 358 LIEL 361


>gi|352681870|ref|YP_004892394.1| 2-methylthioadenine synthetase [Thermoproteus tenax Kra 1]
 gi|350274669|emb|CCC81314.1| 2-methylthioadenine synthetase [Thermoproteus tenax Kra 1]
          Length = 411

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/364 (34%), Positives = 201/364 (55%), Gaps = 36/364 (9%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++T+GC   ++D+E +A +L   G    D  E+AD+ L+ TC V+   +      I +
Sbjct: 3   LYVETYGCWLAKADAEIIARRL---GGTRVDRPEDADVVLMYTCAVREDGEIRQLKRIRE 59

Query: 121 CKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
              A K L+VAGC+ +     +++L   +               + +  +EV     + +
Sbjct: 60  L--ASKSLIVAGCLAKARPYTIRQLAPSA---------------QLIYPNEVEGGRERTM 102

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIAD 236
            AL  P       +  +P+ VGCLG CT+C TK+ RG  G   S   + +V  V+  +A 
Sbjct: 103 SALPEPD---GSVIYTVPLQVGCLGNCTFCVTKYTRGGAGYVKSARPDQVVEHVKRAVAK 159

Query: 237 GVKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
           G +E++L+ +D   YG D     G NLP LL  I+ E+  DG   +RIGM+ P    + +
Sbjct: 160 GAREIYLTGQDVITYGFDARWQRGWNLPDLLERILREV--DGDYRIRIGMSEPWVFGKFV 217

Query: 293 KEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI-ELVPGMQIAT 350
            +I ++++    VY F H+PVQSGSD VL  M R YT  ++R +V  +  EL   + IAT
Sbjct: 218 DQILDIVKSDERVYRFFHLPVQSGSDRVLRRMGRRYTAQEYRELVLKIKRELNDDVFIAT 277

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 409
           DII GFPGET+EDF +T+ L++E  F +VH++++  RP T A+ M  +VP AV K+RS+ 
Sbjct: 278 DIIVGFPGETEEDFQETLKLMEELVFDKVHVARYSRRPFTEASVMPDQVPDAVKKERSKR 337

Query: 410 LTSV 413
            +S+
Sbjct: 338 ASSL 341


>gi|342218658|ref|ZP_08711266.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Megasphaera sp. UPII
           135-E]
 gi|341589354|gb|EGS32635.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Megasphaera sp. UPII
           135-E]
          Length = 443

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/388 (34%), Positives = 203/388 (52%), Gaps = 23/388 (5%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           + G +  Y+ T+GC  N SDSE  AGQL A GY +T++ + AD+ L+NTC V+  ++   
Sbjct: 3   VLGNKFAYIATYGCQMNSSDSERYAGQLEALGYHMTEDMDMADVILLNTCCVRETAEGKT 62

Query: 115 DTLIAKCKSAKK---PLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL 166
              I + K  K+    LV+A  GC+ Q  +D   +    V +V G   I ++ E+++   
Sbjct: 63  LGKIGELKHYKERNPKLVIAITGCMAQEWQDRLFERAPHVDLVIGTHNIHKLTELLQVRQ 122

Query: 167 KGHEVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
             H   L     LPA  DLP  R +KF   +PI  GC   CTYC   H RG   S  ++ 
Sbjct: 123 GKHA--LAADMSLPAFHDLPTKRFHKFFAWVPIMNGCNKYCTYCIVPHVRGREVSRPLQD 180

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG-M 282
           +V  V+ +   G KE+ L  ++  +YG D+  G +   L++A+      D   + RI  M
Sbjct: 181 IVAEVKALGRAGYKEITLLGQNVNSYGLDLKDGTDFSSLVDAL-----EDAKGVERIRYM 235

Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
           T+ P  +   K I  + R   V   LH+PVQSGS+A L  MNR YT+  +  +VD   E 
Sbjct: 236 TSHPKDMTK-KMIDAIARSTRVVHHLHLPVQSGSNATLKRMNRGYTVEHYLELVDYAREK 294

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 401
           +P + + TD+I GFPGET+E F +T+ LI+   +   +   + PR GTPAA  K ++P  
Sbjct: 295 MPDLVLTTDMIVGFPGETEEMFQETLALIQRVGYDMAYTFIYSPRTGTPAATWKDQIPQE 354

Query: 402 VVKKRSRELTSVFEAFTPYLGMEGRVER 429
              KR + L  +   F+  L +  ++E+
Sbjct: 355 EKSKRLKRLMDIQNEFS--LALNKKMEQ 380


>gi|48477501|ref|YP_023207.1| oxidoreductase [Picrophilus torridus DSM 9790]
 gi|48430149|gb|AAT43014.1| hypothetical oxidoreductase [Picrophilus torridus DSM 9790]
          Length = 426

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 193/376 (51%), Gaps = 24/376 (6%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y +++GC+  +S++     ++   G  L D+ E AD+ +I TC V   ++  M   I +
Sbjct: 29  VYFESYGCTLEKSEAALYVNKMLQDGGELVDDPERADVSVIGTCVVIKHTEDHMLKRIGE 88

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
                + ++V GC+   + +  E E + ++                K  E R  +     
Sbjct: 89  LSKKSRNVLVLGCLATVNGNTLESENIRVI----------------KPREFRSFY---TG 129

Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
            LD  K++    ++ +PIN GC G C +C +  +RG L S + E +VG+VR  I  G++E
Sbjct: 130 TLDDVKIKEPSILDGIPINQGCTGHCNFCISHISRGKLLSRSPEKIVGQVRMQIESGIRE 189

Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
           + ++S DT AYG+DI  +L  L+N+I      D   MLR+GM  P    + L+++ +  +
Sbjct: 190 IRITSLDTAAYGKDINTDLADLINSITG---LDVDFMLRVGMMEPRNTYDILEKLIDAYK 246

Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
           +  V+ FLH+PVQSG + +L +MNREY + +   V+    E  P M  +TDII G+  E 
Sbjct: 247 NDKVFKFLHLPVQSGDNRILDSMNREYKIEEAGHVIKRFKEEFPDMVFSTDIIAGYYTED 306

Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT-- 418
            E    T   I+ Y    ++I++F PRP TP    K +PS + K+ S+++  + + +   
Sbjct: 307 SESMENTYKFIETYMPDIINITRFSPRPYTPDFSRKTMPSNITKEFSKKIMEMHKEYMDE 366

Query: 419 PYLGMEGRVERIWITE 434
                 GR+  + +TE
Sbjct: 367 KLSRYHGRMLNVMVTE 382


>gi|405983202|ref|ZP_11041512.1| MiaB/RimO family radical SAM methylthiotransferase [Slackia
           piriformis YIT 12062]
 gi|404389210|gb|EJZ84287.1| MiaB/RimO family radical SAM methylthiotransferase [Slackia
           piriformis YIT 12062]
          Length = 451

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/389 (32%), Positives = 203/389 (52%), Gaps = 29/389 (7%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T  + T+GC  N+ DSE +AG L + G     + E+A+I +  TC ++  +   +   +
Sbjct: 7   KTFCLYTYGCQMNEHDSERIAGMLESHGAVQVSSVEQAEIAIFVTCCIREAADVRLMGQV 66

Query: 119 AKCKS---------AKKPLVVAGCVPQGSRDLKELEGV-----SIVGVQQIDRVVEVVEE 164
           A  K+         +K+ + + GC+  G RD ++L         + G Q I+ +V ++E 
Sbjct: 67  ASIKNIPLPQGSELSKRIVCIGGCI--GQRDAEKLPEALPHVDVVFGTQNIEHLVSLIEA 124

Query: 165 TL--KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
            +   GH+V +L      + +LP  R + +   LP+ VGC   CTYC   + RG   S T
Sbjct: 125 AIIQGGHQVEVLDSSTSFSTELPSKRVHPWSAWLPVTVGCNNFCTYCIVPYVRGRERSRT 184

Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI--VAELPPDGSTMLRI 280
           +E +V   R ++ADGVKE+ L  ++  +YGRD+    P   + +  VAE    G   LR 
Sbjct: 185 LEDVVEEARGLVADGVKEITLLGQNVNSYGRDL-YGEPRFADVLRGVAET---GVERLRF 240

Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
             ++P  +   + E+   L +  +   LH+PVQSGSDA+L AMNR YT   +  +++ + 
Sbjct: 241 ATSHPKDLTREVIELYGSLGN--LMPSLHLPVQSGSDAILKAMNRRYTAEHYLGLIEEVR 298

Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVP 399
           ++ P +  +TDII GFPGET+EDF  T +L++   + QV    +  R GTPAA M+   P
Sbjct: 299 KVNPDISFSTDIIVGFPGETEEDFQATYDLVERVGYSQVFTFIYSRREGTPAASMQDDTP 358

Query: 400 SAVVKKRSRELTSVFE--AFTPYLGMEGR 426
             V+++R   L  + +  AF       GR
Sbjct: 359 HEVIQRRFDSLVDLVQENAFAQNQRFVGR 387


>gi|188529339|gb|ACD62415.1| CDKAL1-like protein [Drosophila silvestris]
          Length = 248

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/155 (55%), Positives = 121/155 (78%)

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           LEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL  M REY   DF  VVD L   VPG+ I
Sbjct: 1   LEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDLLRSRVPGLTI 60

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
           ATDIICGFP ET++DF +T+ L ++Y+FP + I+QF+PRPGTPAA+++++P+ +VKKR++
Sbjct: 61  ATDIICGFPTETEQDFEETMTLCEKYQFPILFINQFFPRPGTPAAKIERIPANLVKKRTK 120

Query: 409 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
            LT +F ++ PY   EG++  + +TEI+ D +H V
Sbjct: 121 RLTDLFYSYEPYAEREGQLYTVLVTEISHDKLHYV 155


>gi|448303684|ref|ZP_21493633.1| MiaB-like tRNA modifying protein [Natronorubrum sulfidifaciens JCM
           14089]
 gi|445593469|gb|ELY47647.1| MiaB-like tRNA modifying protein [Natronorubrum sulfidifaciens JCM
           14089]
          Length = 417

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 129/388 (33%), Positives = 204/388 (52%), Gaps = 27/388 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D  ++AD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHYRVDGPDDADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
                 L + GC  + QG    +E     I G  Q+    EV E    G E         
Sbjct: 65  ADETADLFITGCMALAQG----EEFAQADIDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TKHA G + S  +E  V + R +I  G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPPIEENVAKARALIHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   L  LL  I A    +G   +R+GM NP  +    +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLERICA---IEGDFRVRVGMANPKGVHGIREELAAV 227

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              H  +Y FLH PVQSGS+ VL  M R++ + ++  VV+T  + +    ++TD I GFP
Sbjct: 228 FAEHDELYDFLHAPVQSGSNDVLGDMRRQHQVDEYLEVVETFDDALEYWTLSTDFIVGFP 287

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
            ETD D  Q++ L++E +  ++++++F  RPGT AA MK +   + K+RS+E+++     
Sbjct: 288 TETDHDHAQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTIKKERSKEMSAAKREL 347

Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGI 440
           V +A+   +G E R + + + E  AD +
Sbjct: 348 VADAYAEMVG-ETREDVLVVEEGTADSV 374


>gi|289582599|ref|YP_003481065.1| MiaB-like tRNA modifying protein [Natrialba magadii ATCC 43099]
 gi|448281973|ref|ZP_21473266.1| MiaB-like tRNA modifying protein [Natrialba magadii ATCC 43099]
 gi|289532152|gb|ADD06503.1| MiaB-like tRNA modifying enzyme [Natrialba magadii ATCC 43099]
 gi|445577602|gb|ELY32035.1| MiaB-like tRNA modifying protein [Natrialba magadii ATCC 43099]
          Length = 417

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 129/388 (33%), Positives = 207/388 (53%), Gaps = 27/388 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D  +EAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHYRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
            +    L + GC  + QG    +E     + G  Q+    EV E    G E         
Sbjct: 65  STETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S ++E  V + R +I  G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   L  LL  I A    +G   +R+GM NP  +    +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEEICA---IEGDFRVRVGMANPKGVHGIREELADV 227

Query: 299 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              +  +Y FLH PVQSGSD VL  M R++ +S++  V++T  +++    ++TD I GFP
Sbjct: 228 FAANDELYDFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIETFDDVLEYWTLSTDFIVGFP 287

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
            ETD D  Q++ L++E +  ++++++F  RPGT AA MK +   V K RS+E+++     
Sbjct: 288 TETDHDHEQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGQVKKDRSKEMSAAKREL 347

Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGI 440
           V EA+   +G E R + + + +  AD +
Sbjct: 348 VGEAYAEMVG-ETREDVLVVEQGTADSV 374


>gi|319790575|ref|YP_004152208.1| RNA modification enzyme, MiaB family [Thermovibrio ammonificans
           HB-1]
 gi|317115077|gb|ADU97567.1| RNA modification enzyme, MiaB family [Thermovibrio ammonificans
           HB-1]
          Length = 442

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 139/399 (34%), Positives = 204/399 (51%), Gaps = 26/399 (6%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            ++KTFGC  N +DSE MAG L   GY      EEADI ++NTC+V++   +   + I  
Sbjct: 5   FFIKTFGCQMNVNDSEKMAGLLRDMGYEKAQTPEEADIVIVNTCSVRAKPDNKAYSFIGN 64

Query: 121 CKSAKKP-----LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLK-GHEVR 172
            K  KK      + VAGCVPQ  ++ +     V +V G     ++ +++E   + G  V 
Sbjct: 65  LKRLKKRRPDLVVAVAGCVPQKEKEQILRFPHVDLVFGTFNFVKLPQLLERVKREGRVVE 124

Query: 173 LLHRK-----KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           +L+RK     KLP +D      N F+  + +  GC   CTYC     RG   S     +V
Sbjct: 125 ILNRKIPEEEKLPLVD--SYLENPFIAYVTVQRGCNRFCTYCIVPFTRGRERSVAPHLVV 182

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             V+ +   GVKEV L  ++   YG   G +L  LL  +V+E+  +G   +R   ++P  
Sbjct: 183 EEVKRLAERGVKEVHLLGQNVDFYGYQ-GTDLADLL-YMVSEV--EGVERVRFTTSHPAG 238

Query: 288 ILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
             E    IA  +R  P V  ++H+P QSGS+ VL  MNR YT  ++   V  L E VP +
Sbjct: 239 FSER---IARAIRDIPKVCPYVHLPPQSGSNRVLERMNRGYTREEYIEKVQMLREFVPNV 295

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
            ++ D I GFPGET+EDF QT++L++E  F Q  + ++ PRP T AA  K  VP  V  +
Sbjct: 296 ALSGDFIVGFPGETEEDFEQTLSLVEECVFDQAFVFEYSPRPFTKAATFKDDVPKEVKNR 355

Query: 406 RSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGIHL 442
           R + L  +   +A    L   G+VE + I   +  G  L
Sbjct: 356 RLQTLQELVKKQALERNLERVGKVEEVLIEGFSPKGSEL 394


>gi|13542169|ref|NP_111857.1| 2-methylthioadenine synthetase [Thermoplasma volcanium GSS1]
 gi|14325601|dbj|BAB60504.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 401

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 190/376 (50%), Gaps = 26/376 (6%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY + +GC+ NQ ++     +L   G  L  N +EAD+ +I TC V   ++  M   I  
Sbjct: 3   IYFEAYGCTLNQGETALYVNKLLNEGNTLVSNPKEADLSIIGTCAVIKKTEDHMMARIQN 62

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
                K  V+    P   + + E + VS++   +     EV++E               P
Sbjct: 63  LSRFGKVEVIGCLAPVKGKTMVE-DNVSVIEKDRFRSFQEVIDEVS-------------P 108

Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
                     + V  +PIN GC G C +C +  ARG L S   E + G+++ ++  G+KE
Sbjct: 109 V-------NAEIVSGIPINQGCTGKCNFCVSHIARGKLVSRKPEKIAGQIKILLQRGIKE 161

Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
           + ++S DT AYG+DIG+ LP L+  I  E+  D    LR+GM  P   LE + ++    R
Sbjct: 162 IKITSLDTAAYGKDIGLRLPHLIRTI-TEIGDDFR--LRVGMMEPKNTLEIVDDLISAYR 218

Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
              V+ FLH+PVQSG D VL  MNREYT+SDF  +     E  P   ++TD+I G+  E 
Sbjct: 219 SEKVFKFLHLPVQSGDDYVLEVMNREYTVSDFIRITGKFREAFPDSTLSTDLIIGYYAEN 278

Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF--T 418
           D+ F +TV LI++ +   +++++F PR  T     +  P+ ++K++ R +  + +     
Sbjct: 279 DDSFEKTVQLIEKIRPEIINVTKFSPRELTADFEKRPKPTNILKEQDRMIADMHKEILQE 338

Query: 419 PYLGMEGRVERIWITE 434
            +  + G+ E + ITE
Sbjct: 339 KFSNLIGKTEFVLITE 354


>gi|448737807|ref|ZP_21719841.1| MiaB-like tRNA modifying enzyme [Halococcus thailandensis JCM
           13552]
 gi|445803263|gb|EMA53562.1| MiaB-like tRNA modifying enzyme [Halococcus thailandensis JCM
           13552]
          Length = 414

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/358 (33%), Positives = 193/358 (53%), Gaps = 23/358 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           + +++T+GC+ N+ +S  +  +L   G+   D    AD+ ++NTCTV   +++ M     
Sbjct: 3   SYHIETYGCTANRGESRAIERRLRDGGHHPVDGPANADVAILNTCTVVEKTETNMRRRAE 62

Query: 120 KCKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
           +   A   +VV GC+   QG +   +L+  ++ G  ++  VV       +  E       
Sbjct: 63  ELDEATADVVVTGCMALAQGEQ-FADLD-ATVCGWDEVPEVV-------RNGECPRPTPD 113

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
             P LD         V ILPI  GC+  C+YC TKHA G + S  +E  V + R ++  G
Sbjct: 114 AEPILD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPPIEENVRKARALVHAG 166

Query: 238 VKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
            KE+ ++ +DTG YG D G   L  LL  I A    DG   +R+GM NP  +    +E+A
Sbjct: 167 AKEIRVTGQDTGVYGWDTGERKLHELLERICA---IDGDFRVRVGMANPKGVHGIREELA 223

Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
           +V      +Y+FLH PVQSGS+ VL  M R++ +S+FR VV+T  + +    +ATD I G
Sbjct: 224 DVFAEEEKLYNFLHAPVQSGSNDVLGDMRRQHQVSEFRDVVETFDDRLDHWTLATDFIVG 283

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           FP ETD D  Q++ L++E    ++++++F  RPGT AA MK +     K+RS+ ++ +
Sbjct: 284 FPSETDADHEQSMALLRETTPERINVTRFSKRPGTDAAEMKGLGGTKKKERSKAMSDL 341


>gi|419760967|ref|ZP_14287228.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
           africanus H17ap60334]
 gi|407513872|gb|EKF48745.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
           africanus H17ap60334]
          Length = 429

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/359 (33%), Positives = 197/359 (54%), Gaps = 25/359 (6%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            ++KT+GC  N++DSE     L   GY   +N  EADI ++NTC V+  ++    + I +
Sbjct: 3   FFIKTYGCQMNENDSEVARYYLEQEGYESAENENEADIVILNTCVVRKKAEDKFLSTIGE 62

Query: 121 CKSAKKPLVVAGCVPQGSRDLKE---LEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHR 176
            +   K + V GC   G+  LKE     GV+ ++G + I R+ E VE ++KG +  +   
Sbjct: 63  LRKKNKKIGVMGC---GAEKLKEDLFKRGVNFVIGTRAISRIPEAVELSIKGKKAAIFD- 118

Query: 177 KKLPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
            KL  +D   +  R +K    + I  GC   CTYC   + RG   S  +E ++  V+ + 
Sbjct: 119 DKLDEIDYRNILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRKMEDILQEVKNLS 178

Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG-MTNPP--FIL 289
            +GV+E+    ++  AYG+D+  G +L  LLN        +   + RI  +T+ P  F L
Sbjct: 179 LNGVREITYLGQNVDAYGKDLNDGTSLAKLLNE-----TKNIENIERIWFLTSYPTDFSL 233

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           +  +EIA   +   +   +H+PVQ GS+ +L  MNR YT+ ++  ++ ++ E+VP   I+
Sbjct: 234 DIAREIASSEK---IAKSIHLPVQHGSNKILKKMNRRYTIEEYYELIKSIREIVPDASIS 290

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--KKVPSAVVKKR 406
           +DII GFP ET++DF QTV L+KE KF +++++ + PR GT A +     VP AV  +R
Sbjct: 291 SDIIVGFPDETEDDFQQTVKLVKEIKFERLNLAIYSPREGTIAWKYFEDNVPHAVKTRR 349


>gi|427414218|ref|ZP_18904408.1| MiaB-like tRNA modifying enzyme [Veillonella ratti ACS-216-V-Col6b]
 gi|425714594|gb|EKU77597.1| MiaB-like tRNA modifying enzyme [Veillonella ratti ACS-216-V-Col6b]
          Length = 433

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 192/366 (52%), Gaps = 15/366 (4%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T+   T GC  NQ D++ M G     GY   D  E+ADI++INTC+V +  +     LI
Sbjct: 2   KTVAFTTLGCRVNQYDTDAMRGLFIQSGYTPVDFDEKADIYVINTCSVTNMGERKSRQLI 61

Query: 119 AKCKSAKKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE---- 170
            K K   +   ++V GC  Q     +  ++GV++V G     RVVE+VE+ L+  E    
Sbjct: 62  RKAKRTNEDAYIIVTGCYAQLAPEAIATIDGVNLVIGTNNRHRVVELVEQ-LESTEKQIS 120

Query: 171 -VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
            VR ++ +     + L     +K    + I  GC   CT+C   + RG L S  VE +V 
Sbjct: 121 IVRNIMEQATFEEMPLYGNEIDKARAFMKIQEGCNNYCTFCIIPYTRGKLKSRRVEDIVK 180

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
             + ++  G  E+ L+    G YG ++ +  P L + + A L   G   +R+G      +
Sbjct: 181 EAKRLVEHGYHEIVLTGIHLGNYGIEL-LEKPNLAHVVKALLEIPGLERIRLGSIESVEV 239

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            E L ++  + + P   + LH+P+Q+GSD +L  MNR Y L +F+ ++  L   +PG+ I
Sbjct: 240 SEELVDL--MAKDPRFCTHLHLPLQAGSDHILKLMNRHYNLQEFKDLIARLRSRIPGLAI 297

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFPGETDEDF +T+  ++E  F  +H   +  R GTPAA M+ +VP AV K R 
Sbjct: 298 TTDIIAGFPGETDEDFEETMRTVEEIGFTHIHAFPYSKREGTPAATMEDQVPEAVKKTRV 357

Query: 408 RELTSV 413
             L S+
Sbjct: 358 ALLNSL 363


>gi|339444956|ref|YP_004710960.1| hypothetical protein EGYY_14080 [Eggerthella sp. YY7918]
 gi|338904708|dbj|BAK44559.1| hypothetical protein EGYY_14080 [Eggerthella sp. YY7918]
          Length = 453

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/372 (33%), Positives = 188/372 (50%), Gaps = 19/372 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  ++TFGC  N+ DSE +AG     G    D  EEADI    TC V+  + + +   +A
Sbjct: 9   TFCIRTFGCQMNKHDSERIAGMFEGLGALQVDTIEEADIVAFMTCCVREAADTRLYGQVA 68

Query: 120 KCKSA---------KKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
             K+          K+ + V GC+ Q  G +  KEL+ + +V G   +  +  +V   ++
Sbjct: 69  SLKNVPLRTDSPLRKRIVAVGGCIGQRDGEKLTKELDHLDVVFGTHNLGSLPHLVMAAIE 128

Query: 168 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
             GH V +L        +LP  R + +   LPI +GC   C+YC   + RG   S  +E 
Sbjct: 129 EGGHHVEVLDAASSFPTELPTSREHDWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLED 188

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
           +V      +A GVKE+ L  ++  +YGRD+    P     + A L   G   LR   ++P
Sbjct: 189 IVAEAERYVAAGVKEITLLGQNVNSYGRDL-YGAPRFAQVLDA-LDGTGIERLRFATSHP 246

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             + + +      LR   +   LH+PVQSGSDAVL+AMNR YT + +  +V  L ++VP 
Sbjct: 247 KDLTDEVIGKFATLR--SLMPALHLPVQSGSDAVLAAMNRRYTRAHYLELVRKLRDVVPD 304

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVK 404
           + ++TDII GFPGET +DF  T  L+ E  + QV    +  R GTPAA M+   P   ++
Sbjct: 305 IALSTDIIVGFPGETAKDFENTYRLVDEVGYHQVFTFIYSKREGTPAASMEDTTPRETIQ 364

Query: 405 KRSRELTSVFEA 416
           +R   L  + +A
Sbjct: 365 ERFDRLVDLVQA 376


>gi|448306889|ref|ZP_21496792.1| MiaB-like tRNA modifying protein [Natronorubrum bangense JCM 10635]
 gi|445597400|gb|ELY51476.1| MiaB-like tRNA modifying protein [Natronorubrum bangense JCM 10635]
          Length = 417

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/387 (32%), Positives = 205/387 (52%), Gaps = 25/387 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D  ++AD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHYRVDGLDDADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
                 L + GC  + QG    +E     I G  Q+    EV E    G E         
Sbjct: 65  SEETADLFITGCMALAQG----EEFAQADIDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TKHA G + S ++E  V + R +I  G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPSIEENVAKARALIHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
           E+ ++ +DTG YG D G      L   + E+  +G   +R+GM NP  +    +E+A V 
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEHICEI--EGDFRVRVGMANPKGVHGIREELAAVF 228

Query: 300 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
             H  +Y FLH PVQSGS+ VL  M R++ +S++  VV+T  + +    ++TD I GFP 
Sbjct: 229 AEHDELYDFLHAPVQSGSNDVLGDMRRQHQVSEYLEVVETFDDALEYWTLSTDFIVGFPT 288

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----V 413
           E+D D  Q++ L++E +  ++++++F  RPGT AA MK +   + K+RS+E+++     V
Sbjct: 289 ESDHDHAQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKEMSAAKREIV 348

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGI 440
            +A+   +G E R + + + E  AD +
Sbjct: 349 ADAYADMVG-ETREDVLVVEEGTADSV 374


>gi|302391395|ref|YP_003827215.1| MiaB-like tRNA modifying enzyme [Acetohalobium arabaticum DSM 5501]
 gi|302203472|gb|ADL12150.1| MiaB-like tRNA modifying enzyme [Acetohalobium arabaticum DSM 5501]
          Length = 436

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/384 (32%), Positives = 195/384 (50%), Gaps = 25/384 (6%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           E +   T GC  NQ D+E M    +A  Y L D S+EAD+++INTCTV          ++
Sbjct: 2   ERVAFYTLGCKVNQYDTEAMINLFTAADYELVDFSDEADVYVINTCTVTHQGARKSRKMV 61

Query: 119 AKCKSAKKPLVVA--GCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLL 174
            +        +VA  GC PQ S  ++ E++GV  IVG +   R+V++VE+  +  E    
Sbjct: 62  RRANRRNPQAIVAVVGCYPQVSPAEILEIDGVDLIVGTEGQSRIVDLVEQAKRADESLNF 121

Query: 175 HRKKLPALDLPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
            R    A D  ++  +KF E     L +  GC   C YC   + RG + S  +E  V   
Sbjct: 122 VRDISEAEDFEEIPLDKFEERTRASLKVQDGCDNFCAYCIIPYTRGSVRSRRIEDAVAEA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
           + + A G KE+ L+    GAYG+++   ++L  LL  ++      G   +R+       +
Sbjct: 182 KRLAASGFKEIVLTGIHLGAYGKEVEEEIDLVTLLKELI---EISGLERIRLSSIEATEV 238

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
              L ++       C +  LH+P+Q+GSD +L+AMNR+YT+  +   V  +   +P + +
Sbjct: 239 TSDLIDLIATEEKLCRH--LHLPLQNGSDKILAAMNRDYTVQQYADKVAEIRSNIPQIAL 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA--------RMKKVPS 400
            TD++ GFPGETDEDF  T  LI+E  F  +H+ ++  R GT AA        ++KK  S
Sbjct: 297 TTDVMVGFPGETDEDFEATYQLIEELAFSDLHVFKYSKREGTAAAKFSNQVHSKLKKERS 356

Query: 401 AVVKKRSRELTSVFEAFTPYLGME 424
           A ++K + +L S +     +LG E
Sbjct: 357 AKLRKLADDLASQYR--KKFLGAE 378


>gi|327310209|ref|YP_004337106.1| MiaB family RNA modification protein [Thermoproteus uzoniensis
           768-20]
 gi|326946688|gb|AEA11794.1| RNA modification enzyme, MiaB family [Thermoproteus uzoniensis
           768-20]
          Length = 416

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/359 (33%), Positives = 201/359 (55%), Gaps = 34/359 (9%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IY++T+GC   ++D++ +   L   G A+ ++  +AD+ L+ TC V+   +      + +
Sbjct: 3   IYVETYGCWLAKADAQIL---LQRLGGAVAESPRDADLVLVYTCAVREDGEVRQLRRLGQ 59

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE-ETLKGHEVRLLHRKKL 179
             S  K LVVAGC+ +               ++Q+ +  E++  E ++G E R +    L
Sbjct: 60  LASESKRLVVAGCLAKAR----------PYTIRQVAKNAELLYPEQVEGGEGRSMS--VL 107

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIAD 236
           P  D         +  +P+ VGCLG CT+C TK+ RG  G   S   + +V  V+  +A 
Sbjct: 108 PEPD------GGLIYTVPLQVGCLGNCTFCITKYTRGGAGYVKSAPPDLVVEYVKKAVAK 161

Query: 237 GVKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
           G KE++L+ +D   YG D     G NLP LL  I++++  +G   +RIGM+ P    +  
Sbjct: 162 GAKEIYLTGQDVITYGFDARWRRGWNLPDLLEKILSQV--EGDYRIRIGMSEPWVFGKFA 219

Query: 293 KEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI-ELVPGMQIAT 350
             I +++ R   VY + H+PVQSGSD VL  M R YT  ++R ++  +  EL   + +AT
Sbjct: 220 DAILDIVKRDERVYRYFHLPVQSGSDEVLRRMGRRYTADEYRGLISKIKRELNDDVFVAT 279

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 408
           D+I GFPGET+EDF  T+ L++E +F +VH++++  RP T A+ M +++P AV K+RS+
Sbjct: 280 DVIVGFPGETEEDFRATLRLMEELEFDKVHVARYSRRPFTEASVMPEQIPDAVKKQRSK 338


>gi|388502314|gb|AFK39223.1| unknown [Medicago truncatula]
          Length = 280

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/98 (88%), Positives = 93/98 (94%)

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
           MQIATDIICGFPGETDEDF QTVNLIKEYKF QVHISQFYPRPGTPAARMKKVPS VVK+
Sbjct: 1   MQIATDIICGFPGETDEDFEQTVNLIKEYKFSQVHISQFYPRPGTPAARMKKVPSNVVKR 60

Query: 406 RSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           RSRELT+VFE+FTPY GMEG+VERIWIT+IA DG+HLV
Sbjct: 61  RSRELTNVFESFTPYSGMEGKVERIWITDIATDGVHLV 98


>gi|448354903|ref|ZP_21543658.1| MiaB-like tRNA modifying protein [Natrialba hulunbeirensis JCM
           10989]
 gi|445637234|gb|ELY90390.1| MiaB-like tRNA modifying protein [Natrialba hulunbeirensis JCM
           10989]
          Length = 417

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/388 (32%), Positives = 208/388 (53%), Gaps = 27/388 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D  ++AD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHYRVDGPDDADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
            +    L + GC+   QG    +E     + G  Q+    EV E    G E         
Sbjct: 65  SAETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S ++E  V + R +I  G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   L  LL  I A    +G   +R+GM NP  +    +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEEICA---IEGDFRVRVGMANPKGVHGIREELADV 227

Query: 299 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              +  +Y+FLH PVQSGSD VL  M R++ +S++  V++T  +++    ++TD I GFP
Sbjct: 228 FAANDELYNFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIETFDDVLEYWTLSTDFIVGFP 287

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
            ETD D  Q++ L++E +  ++++++F  RPGT AA MK +   V K RS+E+++     
Sbjct: 288 TETDHDHEQSMALLRETRPEKINVTRFSKRPGTDAANMKGLGGQVKKDRSKEMSAAKREL 347

Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGI 440
           V EA+   +G E R + + + +  AD +
Sbjct: 348 VGEAYAEMVG-ETREDVLVVEQGTADSV 374


>gi|126178768|ref|YP_001046733.1| MiaB-like tRNA modifying enzyme [Methanoculleus marisnigri JR1]
 gi|125861562|gb|ABN56751.1| MiaB-like tRNA modifying enzyme [Methanoculleus marisnigri JR1]
          Length = 374

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 127/362 (35%), Positives = 191/362 (52%), Gaps = 37/362 (10%)

Query: 89  LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVS 148
           +T++ EEAD  ++NTCTV   ++  M   +A    A + L V GC+P             
Sbjct: 1   MTEHPEEADAVIVNTCTVIGATERKMLRRLAL--FADRDLYVTGCMP------------- 45

Query: 149 IVGVQQIDRVVEVVEETLKGHEVR--LLHRKKLPALDLPKVRRNKFVEILPINVGCLGAC 206
              V Q+D++  V       H +R   +H +          R      ++ +  GC+G C
Sbjct: 46  ---VVQLDKIRSVCTP----HVIRPDEIHERAGSV----GTRGPGATGVVQVASGCVGRC 94

Query: 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266
           +YC T+ ARG L S   E++   VR ++  G  E+ L+ +D  A+G D G +LP LL  I
Sbjct: 95  SYCITRLARGRLISAPREAIADAVRALVTSGACEIQLTGQDVAAWGLDRGESLPDLLQEI 154

Query: 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE 326
            AE+P  G   +R GM +P  +L  L+ + +      ++ FLH+PVQSGSD VL  M R 
Sbjct: 155 -AEIP--GRFAVRPGMMHPATVLGILEPLVDAYESKKIFRFLHLPVQSGSDTVLERMQRG 211

Query: 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386
           YT +D   +VD   E  P M I++D I GFPGETDE+F+QT+ L++   F +V+I+++  
Sbjct: 212 YTAADVLRIVDAFRERYPDMMISSDFITGFPGETDEEFSQTLELLRRAAFVKVNITRYSR 271

Query: 387 RPGTPAARMKKVPSAVVKKRSRELTS----VFEAFTPYLGMEGRVERIWITEIAADGIHL 442
           RPGTPAA +K +P  + K RSR L +    V++++       GR   I  TE  A G  +
Sbjct: 272 RPGTPAAALKDLPERIRKDRSRTLLAEANRVYDSYNER--WIGRETSIVATEKNAPGSTV 329

Query: 443 VR 444
            R
Sbjct: 330 CR 331


>gi|170287904|ref|YP_001738142.1| MiaB-like tRNA modifying enzyme [Thermotoga sp. RQ2]
 gi|170175407|gb|ACB08459.1| MiaB-like tRNA modifying enzyme [Thermotoga sp. RQ2]
          Length = 434

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/357 (35%), Positives = 196/357 (54%), Gaps = 19/357 (5%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T+ ++TFGC  NQ +SEYMA QL   GY +    + A  +++N+C V    +  +  LI
Sbjct: 2   KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPGGD-ASYYIVNSCAVTKEVEKKVKRLI 60

Query: 119 AKCKSAKK--PLVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
              ++  +   +++ GC  Q S D  + L    I+G+ +   +V+ +  +L G +  ++ 
Sbjct: 61  KSIRNRNRNAKIILTGCFAQLSPDEARNLPVDMILGIDEKKNIVDHIN-SLNGKQQVVVS 119

Query: 176 RKKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVR 231
               P  +  KV+    ++    + +  GC   CTYC  + ARG  + S  +E       
Sbjct: 120 EPGRPVYE--KVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEEFA 177

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
            ++  G KE+ ++  + G YG+D+G +L  LL  IV E+P  G   +R+   N   + + 
Sbjct: 178 EMVMKGYKEIVITGVNLGKYGKDMGSSLAELLR-IVEEIP--GDYRVRLSSINVEDVND- 233

Query: 292 LKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
             EI E   R+P +   LH+ VQSGSD VL  M R+Y +SDF  VVD L  + P   I T
Sbjct: 234 --EIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYKISDFMRVVDKLRSIDPDFSITT 291

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           DII GFPGETD DF +T+ L+++ +F +VHI +F PRPGTPA+RM+  VP +  K+R
Sbjct: 292 DIIVGFPGETDADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVPESKKKER 348


>gi|15790759|ref|NP_280583.1| hypothetical protein VNG1861C [Halobacterium sp. NRC-1]
 gi|169236502|ref|YP_001689702.1| hypothetical protein OE3617F [Halobacterium salinarum R1]
 gi|10581306|gb|AAG20063.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167727568|emb|CAP14356.1| MiaB-like tRNA modifying enzyme [Halobacterium salinarum R1]
          Length = 432

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/354 (32%), Positives = 188/354 (53%), Gaps = 16/354 (4%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   + + +AD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESRDIERRLRDAGHHKVETAADADVAILNTCTVVEKTERNMLRRAKEL 64

Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
                 L+V GC+      L + E  +   V       + V E +   E         P 
Sbjct: 65  ADETADLIVTGCMA-----LAQGEAFADADVDAQVLHWDDVPEAVTNGECPTTTPDAEPI 119

Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 241
           LD         V ILPI  GC+  C+YC TK A G + S  VE  V + R ++  G KE+
Sbjct: 120 LD-------GVVGILPIARGCMSNCSYCITKQATGRVDSPPVEENVEKARALVHAGAKEI 172

Query: 242 WLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL- 299
            ++ +DTG YG D G   LP LL  I  E+  +G   +R+GM NP  +    +E+A V  
Sbjct: 173 RITGQDTGVYGWDTGERKLPELLERIATEI--EGEFRVRVGMANPGGVHGIREELAAVFA 230

Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
            H  +Y+FLH PVQSGSD VL+ M R++ +S +R +V+T  + +    ++TD I GFP E
Sbjct: 231 EHDEIYNFLHAPVQSGSDDVLADMRRQHEVSQYRDIVETFNDTLGEWTLSTDFIVGFPTE 290

Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
            D+D   +++L++E +  ++++++F  RPGT AA +K +     K RS+ +T +
Sbjct: 291 DDDDHEASMDLLRETRPEKINVTRFSKRPGTDAAELKGLGGQTKKDRSKAMTEL 344


>gi|296133939|ref|YP_003641186.1| MiaB family RNA modification protein [Thermincola potens JR]
 gi|296032517|gb|ADG83285.1| RNA modification enzyme, MiaB family [Thermincola potens JR]
          Length = 445

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 189/364 (51%), Gaps = 22/364 (6%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +   T GC  NQ ++E +A      GY + + S++AD+++INTCTV          +I +
Sbjct: 4   VAFHTLGCKVNQYETEALASLFRRQGYQVVEFSDKADVYVINTCTVTHLGDRKSRQMIRR 63

Query: 121 CKSAKKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEE--------TLKG 168
            K      +VA  GC  Q S  ++  +EGV +V G     +VVE VE+         L  
Sbjct: 64  AKRNNPDAIVAVMGCYAQTSPGEVTAIEGVDLVIGTSDRSKVVECVEDFKRQDTPVNLVK 123

Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             ++    ++LP LD     R      L I  GC   CTYC   +ARG + S   ++++ 
Sbjct: 124 DIMQAREFEELPVLDYESRTR----AFLKIQEGCNNFCTYCIIPYARGPVRSRKRDNVIT 179

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPF 287
               ++ +G +E+ L+    GAYGRD        L A+VA+L    G   LR+G   P  
Sbjct: 180 EAERLVGEGFREIVLTGIHIGAYGRDRDDGYD--LAALVADLARIKGLRRLRLGSVEPED 237

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           +  HL  IA +  +  +   LH+P+QSG DAVL  MNR+Y   +F  +V+++  +V  + 
Sbjct: 238 VTPHL--IATMADNRVICRHLHLPLQSGDDAVLEKMNRKYNTHEFTRLVNSIRAMVDDIA 295

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 406
           I TDII GFPGETDE F+ T N +K   F ++H+ ++ PR GTPAA    +VP+   ++R
Sbjct: 296 ITTDIIVGFPGETDEQFDNTYNYVKALGFSRLHVFKYSPRKGTPAANFPGQVPAETKEER 355

Query: 407 SREL 410
           S  L
Sbjct: 356 SSRL 359


>gi|281411540|ref|YP_003345619.1| MiaB-like tRNA modifying enzyme [Thermotoga naphthophila RKU-10]
 gi|281372643|gb|ADA66205.1| MiaB-like tRNA modifying enzyme [Thermotoga naphthophila RKU-10]
          Length = 434

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/356 (34%), Positives = 194/356 (54%), Gaps = 17/356 (4%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T+ ++TFGC  NQ +SEYMA QL   GY +  + +    +++N+C V    +  +  LI
Sbjct: 2   KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGD-VSYYIVNSCAVTKEVEKKVKRLI 60

Query: 119 AKCKSAKK--PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE--ETLKGHEVRLL 174
              ++  +   +++ GC  Q S D  E   +S+  V  ID    +V+   +L G +  ++
Sbjct: 61  KSIRNRNRNAKIILTGCFAQLSPD--EARNLSVDMVLGIDEKKHIVDHINSLNGKQQVIV 118

Query: 175 HRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRT 232
                P  +  K    ++    + +  GC   CTYC  + ARG  + S  +E        
Sbjct: 119 SEPGRPVYEKVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGSKIRSKPLEIFKDEFVE 178

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
           ++A G KE+ ++  + G YG+D+G +L  LL  ++ ++P  G   +R+   N   + +  
Sbjct: 179 MVAKGYKEIVITGVNLGKYGKDMGSSLAELLK-VIEKVP--GDYRVRLSSINVEDVND-- 233

Query: 293 KEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
            EI E   R+P +   LH+ VQSGSD VL  M R+Y +SDF  VVD L  + P   I TD
Sbjct: 234 -EIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYRISDFMRVVDKLRSIDPDFSITTD 292

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 406
           II GFPGETD+DF +T++L+++  F +VHI +F PRPGTPA+RM   VP +  K+R
Sbjct: 293 IIVGFPGETDDDFQKTLDLVEKVGFSRVHIFRFSPRPGTPASRMGGSVPESKKKER 348


>gi|15605821|ref|NP_213198.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Aquifex
           aeolicus VF5]
 gi|6226354|sp|O66638.1|MIAB_AQUAE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|2982992|gb|AAC06605.1| hypothetical protein aq_284 [Aquifex aeolicus VF5]
          Length = 440

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 124/394 (31%), Positives = 216/394 (54%), Gaps = 22/394 (5%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS-PSQSAMDT 116
           ++  ++KTFGC  N +DSE + G L   GY  TDN EEAD+ ++NTCT++  P Q  +  
Sbjct: 2   SKKFFIKTFGCQMNFNDSERIRGLLKTIGYEQTDNWEEADLIILNTCTIREKPDQKVLSH 61

Query: 117 L----IAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGH 169
           L      K K+ K  + VAGC+ Q  G   +K+   + I+     + ++ E++ +   G+
Sbjct: 62  LGEYKKIKEKNPKALIAVAGCLAQRTGWELVKKAPVIDIMFSSFNMHQLPELINQAQAGY 121

Query: 170 E----VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
           +    +  L + +    + P  R NK+   + I  GC   CTYC     RG   S  + S
Sbjct: 122 KAIAILDELPQDEDKIWEYPVERDNKYCAYVTIIKGCDKNCTYCVVPRTRGKERSRALHS 181

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
           ++  V+ ++ DGV+E+ L  ++  A+G+D     PI  + ++ ++   DG   +R    +
Sbjct: 182 ILDEVKRLVDDGVREIHLLGQNVTAWGKDF--EKPIPFSELLYQVSKIDGVERIRFTTGH 239

Query: 285 PPFILEHLKE-IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           P  + + + E +A++   P V + LH+P Q+GS+ +L+ M+R YT  ++   ++ L E V
Sbjct: 240 PRDLTDDIIEAMADI---PQVCNALHLPFQAGSNRILALMDRGYTKEEYLEKIEKLKEKV 296

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402
             + ++TD+I GFP ET+EDF  T++++K+ +F QV   +F PRPGTPAA M+ ++P  V
Sbjct: 297 KDIAMSTDVIVGFPTETEEDFEHTLDVLKKVRFEQVFSFKFSPRPGTPAAEMEGQIPDDV 356

Query: 403 VKKRSRELTSVFEAFTPYLG--MEGRVERIWITE 434
             +R R L  + ++    +    EG V+ + + E
Sbjct: 357 KTERMRRLLELQKSILSEIAKKYEGTVQEVLVEE 390


>gi|20094517|ref|NP_614364.1| 2-methylthioadenine synthetase [Methanopyrus kandleri AV19]
 gi|19887629|gb|AAM02294.1| 2-methylthioadenine synthetase [Methanopyrus kandleri AV19]
          Length = 423

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/357 (33%), Positives = 188/357 (52%), Gaps = 11/357 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           + ++ +GC+ N  D   +   L   G+ + +++E AD+ ++ TC V+    + M   + +
Sbjct: 4   VAVEVYGCAANHDDGRLVRELLRREGFEVVEDAENADVAVLLTCIVRDSVDARMVNRMRE 63

Query: 121 CKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-HRK 177
            +  + P VVAGC P+    R  K     ++VG + +DR+ E V   L+G  V  L  R+
Sbjct: 64  LE--RVPTVVAGCFPEAYPERARKLRPDAALVGPRHLDRIPEAVRAVLRGDRVEFLGERE 121

Query: 178 KLP-ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
            +    D P+   N    I+PI  GC   C YC  K ARG+L S+  E ++ RV+  +  
Sbjct: 122 DIDWKADAPRELPN-LAAIVPIAEGCPNRCAYCAVKLARGNLRSFPPERILRRVKRELER 180

Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
           G  E+ L+++DT  YG D G N+  LL  +V +L       +R+GM NP        ++A
Sbjct: 181 GAVEIHLTAQDTATYGLDRGTNVVELLEDVV-DLCSRYGARVRLGMFNPGHAYPISDDLA 239

Query: 297 EVL--RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           ++   R   +Y  +H+PVQSG D VL  MNR YT+ +   V       +      TD+I 
Sbjct: 240 DLFASRDDVLYRSIHMPVQSGDDEVLRRMNRNYTVEEALEVYRAFERRLGYFSFITDVIV 299

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL 410
           GFPGET+E F  T+  ++  +   +H S+F  RPGTPAARM+ +VP  V  +RSR L
Sbjct: 300 GFPGETEEAFRNTLRFLERTRPHILHASRFCRRPGTPAARMEDQVPEDVKLRRSRIL 356


>gi|146296852|ref|YP_001180623.1| MiaB family RNA modification protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410428|gb|ABP67432.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 434

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 127/394 (32%), Positives = 210/394 (53%), Gaps = 32/394 (8%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I   T GC  NQ +++ +A      GY + D  +EADI++INTCTV + S       I +
Sbjct: 3   IAFYTLGCKVNQYETQAIAETFERLGYEIVDFDQEADIYVINTCTVTNVSDRKSRQAIKR 62

Query: 121 CK--SAKKPLVVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHR 176
            K  S    +VV GC PQ   ++++++EGV I VG +  +++VE V E LK        +
Sbjct: 63  AKKTSPDSIVVVMGCYPQVYPQEVQKIEGVDIIVGTRDREKIVEYVTEYLK-------QK 115

Query: 177 KKLPALDLPKVRRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVE 224
           KK+ A++  + +R+ F E+            + I  GC   C+YC   +ARG + S ++ 
Sbjct: 116 KKILAVN-NEYKRDTFEELKISSFNERTRAFIKIEEGCEQFCSYCIIPYARGSVVSRSLS 174

Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMT 283
           S++  V+ + ++G KE  ++  +  AYG+D+  +  + L  ++ E+   +    +R+   
Sbjct: 175 SILDEVQRLASNGYKEFVITGINISAYGKDL--DYKVTLVDVIEEISKIEKVRRIRLSSL 232

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
            P  + E    I  +++   +   LH+ +QSGSD +L  MNR YT  ++R +V+ +    
Sbjct: 233 EPIVMKEDF--IKRLVKIEKLCHHLHLSLQSGSDKILKLMNRHYTTDEYRQIVEMVRGYW 290

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 402
             +   TDII GFPGE+DEDF +TV  +KE  F ++H+ +F P+ GT A  M  +V SA 
Sbjct: 291 NDVAFTTDIIVGFPGESDEDFERTVEFVKEIGFSRIHVFRFSPKKGTNAYNMPYQVNSAE 350

Query: 403 VKKRSRELTSVFE--AFTPYLGMEGRVERIWITE 434
            +KRS  L SV    +F  +   EG++  + I E
Sbjct: 351 KEKRSEILKSVARKLSFGFHKKFEGKIVDVLIEE 384


>gi|148269242|ref|YP_001243702.1| MiaB-like tRNA modifying protein [Thermotoga petrophila RKU-1]
 gi|147734786|gb|ABQ46126.1| MiaB-like tRNA modifying enzyme [Thermotoga petrophila RKU-1]
          Length = 434

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/356 (34%), Positives = 194/356 (54%), Gaps = 17/356 (4%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T+ ++TFGC  NQ +SEYMA QL   GY +  + +    +++N+C V    +  +  LI
Sbjct: 2   KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGD-VSYYIVNSCAVTKEVEKKVKRLI 60

Query: 119 AKCKSAKK--PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE--ETLKGHEVRLL 174
              ++  +   +++ GC  Q S D  E   +S+  V  ID    +V+   +L G +  ++
Sbjct: 61  KSIRNRNRNAKIILTGCFAQLSPD--EARNLSVDMVLGIDEKKHIVDHINSLNGKQQVIV 118

Query: 175 HRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRT 232
                P  +  K    ++    + +  GC   CTYC  + ARG  + S  +E        
Sbjct: 119 SEPGRPVYEKVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGSKIRSKPLEIFKDEFVE 178

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
           ++A G KE+ ++  + G YG+D+G +L  LL  ++ ++P  G   +R+   N   + +  
Sbjct: 179 MVAKGYKEIVITGVNLGKYGKDMGSSLAELLK-VIEKVP--GDYRVRLSSINVEDVND-- 233

Query: 293 KEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
            EI E   R+P +   LH+ VQSGSD VL  M R+Y +SDF  VVD L  + P   I TD
Sbjct: 234 -EIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYRISDFMRVVDKLRSIDPDFSITTD 292

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 406
           II GFPGETD+DF +T++L+++  F +VHI +F PRPGTPA+RM   VP +  K+R
Sbjct: 293 IIVGFPGETDDDFQKTLDLVEKVGFSRVHIFRFSPRPGTPASRMGGSVPESKKKER 348


>gi|448529140|ref|ZP_21620399.1| MiaB-like tRNA modifying enzyme [Halorubrum hochstenium ATCC
           700873]
 gi|445709573|gb|ELZ61399.1| MiaB-like tRNA modifying enzyme [Halorubrum hochstenium ATCC
           700873]
          Length = 450

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 197/371 (53%), Gaps = 24/371 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T +++T+GCS N+ +S  +   L   G+   D  E+AD+ ++NTCTV   ++  M     
Sbjct: 3   TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
           +       LVV GC+      L + E  +   V  +I    EV    L G E   +    
Sbjct: 63  ELSDITAELVVTGCMA-----LAQGEQFAEADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
            P LD         V ILPI  GC+  C+YC TK A G + S ++E  V + R ++  G 
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSIEENVEKARALVHAGA 169

Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
           KE+ ++ +DTG YG D G   LP LL+ I      DG   +R+GM NP  I    +E+AE
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAE 226

Query: 298 VLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           V   +  +Y F+H PVQSGSD VL  M R++ +  FR VV+T  + +    ++TD I GF
Sbjct: 227 VFAANEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 412
           P ET+ D +++++L+ E +  ++++++F  RPGT AA MK +   + K+RS+ ++     
Sbjct: 287 PTETEADHDRSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKAMSELKME 346

Query: 413 -VFEAFTPYLG 422
            V EA+   +G
Sbjct: 347 VVGEAYESMVG 357


>gi|410458684|ref|ZP_11312441.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           azotoformans LMG 9581]
 gi|409931034|gb|EKN68022.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           azotoformans LMG 9581]
          Length = 515

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 118/366 (32%), Positives = 197/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG L+  G+  TD++EEADI L+NTC V+  +++ +   I  
Sbjct: 71  FYIRTYGCQMNEHDTEVMAGILTEMGFENTDSTEEADIILLNTCAVRENAENKVFGEIGH 130

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K  K+      L V GC+ Q     +R L++ + V ++ G   I R+ ++++E + G E
Sbjct: 131 LKQLKREKPDLILGVCGCMSQEEGVVNRLLQKHQQVDLIFGTHNIHRLPQLLKEAMFGKE 190

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPK+R  K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 191 RVVEVWSKEGDVIENLPKIRNGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIID 250

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR +   G KE+ L  ++  AYG+D   ++   L  ++ E+       +R   ++P   
Sbjct: 251 EVRDLARQGYKEITLLGQNVNAYGKDFE-DMKYGLGDLMDEIRKIDIPRIRFTTSHPRDF 309

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M+R+YT   +  +V  + E +P + +
Sbjct: 310 DDHLIEV--LAKGGNLMDHIHLPVQSGSTEMLKIMSRKYTREQYLELVRKIKEAIPNVSL 367

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
            TD+I GFP ETDE F  T++L +E ++   +   + PR GTPAA M   VP  V K+R 
Sbjct: 368 TTDLIVGFPNETDEQFEDTLSLYREVEYDSAYTFIYSPREGTPAADMVDNVPMEVKKERL 427

Query: 408 RELTSV 413
           + L ++
Sbjct: 428 QRLNAL 433


>gi|333980035|ref|YP_004517980.1| MiaB family RNA modification protein [Desulfotomaculum kuznetsovii
           DSM 6115]
 gi|333823516|gb|AEG16179.1| RNA modification enzyme, MiaB family [Desulfotomaculum kuznetsovii
           DSM 6115]
          Length = 445

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 190/370 (51%), Gaps = 25/370 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+ + T GC  NQ +S  +A      GY + D SE ADI++INTCTV          LI 
Sbjct: 13  TVAVTTLGCKVNQYESAALATLFRERGYKVVDFSEAADIYVINTCTVTHLGDRKSRQLIR 72

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLL- 174
           +    +    +VV GC  Q S  ++  + GV  +VG +   R+V++VEE     E  L  
Sbjct: 73  RATRNNPHARVVVTGCYAQTSPEEVLSIPGVDLVVGTRDKSRIVDLVEELESRKEGPLAV 132

Query: 175 --------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
                     ++LP   LP    ++    L I  GC   C YC   +ARG L S   E++
Sbjct: 133 VRDVFADQDYEELPVPALP----SRVRAFLKIQEGCNNFCAYCIIPYARGPLRSRDPENV 188

Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTN 284
           +   R ++A G KE+ L+   TGAYG+D   G +L  L+  + AE+P  G   LR+    
Sbjct: 189 LAEARRLVAGGFKELVLTGIHTGAYGQDRPGGPDLAGLVECL-AEIP--GLVRLRLSSVE 245

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           P  I   L +I      P V   LH+P+QSG D VL+ M R YT + FR +V  +   VP
Sbjct: 246 PMDITGKLVDIMAT--RPNVCRHLHIPLQSGDDTVLARMRRHYTTAWFRELVQRVRGCVP 303

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
           G+ I TDII GFPGETD  F  T N ++E  F ++H+ ++ PR GT AA      SA VK
Sbjct: 304 GIAITTDIIVGFPGETDGQFENTFNFVREMAFARLHVFKYSPRQGTEAASFPDQISAPVK 363

Query: 405 K-RSRELTSV 413
           + RSR + ++
Sbjct: 364 EARSRRMIAL 373


>gi|448298920|ref|ZP_21488934.1| MiaB-like tRNA modifying protein [Natronorubrum tibetense GA33]
 gi|445588839|gb|ELY43079.1| MiaB-like tRNA modifying protein [Natronorubrum tibetense GA33]
          Length = 417

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 127/387 (32%), Positives = 203/387 (52%), Gaps = 25/387 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   +  +EAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHYRVEGVDEADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
                 L + GC  + QG    +E     + G  Q+    EV E    G E         
Sbjct: 65  ADETADLFITGCMALAQG----EEFSKADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TKHA G + S  +E  V + R +I  G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKHATGKIESPPIEENVEKARALIHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
           E+ ++ +DTG YG D G      L   + EL  +G   +R+GM NP  +    +E+A+V 
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEQICEL--EGEFRVRVGMANPKGVHGIREELADVF 228

Query: 300 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
             +  +Y FLH PVQSGSD VL  M R++ + ++  ++D   E +    ++TD I GFP 
Sbjct: 229 AEYDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEIIDAFDEALDYWTLSTDFIVGFPT 288

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----V 413
           ETD D  Q++ L++E +  +V++++F  RPGT AA MK +   + K+RS+E+++     V
Sbjct: 289 ETDHDHAQSMALLRETRPEKVNVTRFSKRPGTDAAEMKGLGGTLKKERSKEMSAAKRDIV 348

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGI 440
            EA+   +G E R + + + E  AD +
Sbjct: 349 GEAYADMVG-ETREDVLVVEEGTADSL 374


>gi|167630503|ref|YP_001681002.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1]
 gi|167593243|gb|ABZ84991.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1]
          Length = 446

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 132/400 (33%), Positives = 203/400 (50%), Gaps = 26/400 (6%)

Query: 56  PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
           PG  T    T GC  NQ +++ +AG   A GYA+      AD++++NTCTV   S     
Sbjct: 3   PGEPTAAFHTLGCKVNQGETDAIAGMFKARGYAIVPFDAPADVYVVNTCTVTHLSDRKSR 62

Query: 116 TLIAKC--KSAKKPLVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
             I K   ++    +VV GC  Q + D ++ +EGV IV G  +   +V++VEE  +  E 
Sbjct: 63  QAIRKANRQNPDAVVVVTGCYAQTAADEVQAIEGVDIVVGTDRRSAIVDLVEEHRRSGET 122

Query: 172 --------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
                   R+   ++LPA       R++    + I  GC   CTYC   +ARG + S  +
Sbjct: 123 VNTVYDSCRIERFEELPAAP----ERSRARATIKIQDGCDLYCTYCIIPYARGPVRSRRI 178

Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
           ES+V     +  +G KE+ LS    GAYG D   +L  L+  +   +P  G   +R+G  
Sbjct: 179 ESVVEEATRLTGEGFKEIVLSGIHLGAYGSDFNADLAKLIVEL-CRIP--GLRRIRVGSV 235

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
            P    E   E+ E + HP V    H+P+QSGSDAVL  M R Y   DF  V   + +++
Sbjct: 236 EPQ---EFTPELLEAVVHPRVCPHFHIPLQSGSDAVLERMGRRYRRQDFLDVTRKIQQMI 292

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 402
           PG+ I +D+I GFPGE + D+  +  L +      +H+  + PR GTPAA    ++PSAV
Sbjct: 293 PGVAITSDVIVGFPGEREADYLLSEELCRATGLAGLHVFPYSPRRGTPAATFPDQIPSAV 352

Query: 403 VKKRSRELTSVF-EAFTPYL-GMEGRVERIWITEIAADGI 440
            ++R++ L  +  E  + Y  G  G++  + + E   DG+
Sbjct: 353 KQERAQRLAKLARELASDYAKGFVGQIREV-LAEEQVDGV 391


>gi|448319224|ref|ZP_21508729.1| MiaB-like tRNA modifying enzyme [Natronococcus jeotgali DSM 18795]
 gi|445596433|gb|ELY50519.1| MiaB-like tRNA modifying enzyme [Natronococcus jeotgali DSM 18795]
          Length = 417

 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 131/389 (33%), Positives = 203/389 (52%), Gaps = 29/389 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D  +EAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVG-VQQIDRVVEVVEETLKGHEVRLLHRKK 178
            +    L + GC+   QG    +E     + G V   D V E V       E        
Sbjct: 65  SAETADLYITGCMALAQG----EEFAAADVDGRVLHWDEVPEAV----TNGECPTTTPDA 116

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
            P LD         V ILPI  GC+  C+YC TK A G + S  +E  V +   ++  G 
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKRATGKIDSPPIEENVRKAEALLHAGA 169

Query: 239 KEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
           KE+ ++ +DTG YG D G   L  LL  I A    DG   +R+GM NP  +    +E+AE
Sbjct: 170 KELRITGQDTGVYGWDEGERKLHRLLEEICA---IDGEFRVRVGMANPKGVHGIREELAE 226

Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           V   +  +Y FLH PVQSGSD VL  M R++ +S++  V++T  E +    ++TD I GF
Sbjct: 227 VFAENDELYDFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIETFDEALEYWTLSTDFIVGF 286

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 412
           P ETD D  Q++ L++E +  +V++++F  RPGT AA MK +   + K+RS+E+++    
Sbjct: 287 PTETDRDHAQSMALLRETRPEKVNVTRFSKRPGTDAAEMKGLGGTIKKERSKEMSAAKRE 346

Query: 413 -VFEAFTPYLGMEGRVERIWITEIAADGI 440
            V EA    +G E R + + + E  AD +
Sbjct: 347 IVGEAHASMVG-EVREDCLVVEEGTADSV 374


>gi|149183373|ref|ZP_01861809.1| YmcB [Bacillus sp. SG-1]
 gi|148848916|gb|EDL63130.1| YmcB [Bacillus sp. SG-1]
          Length = 521

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/371 (32%), Positives = 191/371 (51%), Gaps = 15/371 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  TDN+++AD+ L+NTC ++  +++ +   +  
Sbjct: 69  FYIRTYGCQMNEHDTEVMAGIFMALGYEATDNTDDADVILLNTCAIRENAENKVFGELGH 128

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 168
            K  K+      + V GC+ Q     ++ LK    V ++ G   I R+  ++ E    K 
Sbjct: 129 LKHLKREKPELLIGVCGCMSQEESVVNKILKTYHQVDMIFGTHNIHRLPNILNEAYMSKA 188

Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 189 MVVEVWSKEGDVIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 248

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A G +EV L  ++  AYG+DI       L  ++ EL       +R   ++P   
Sbjct: 249 EVRHLAAQGYQEVTLLGQNVNAYGKDIEDLENYGLGDLMDELRKIDIPRIRFTTSHPRDF 308

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS AVL  M R+YT   F  +V  +   +PG+ +
Sbjct: 309 DDHLIEV--LAKKGNLVEHIHLPVQSGSSAVLKIMARKYTRERFLELVGKIKAAMPGVAL 366

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII G+P ET+E F +T++L +E  F       + PR GTPAA+M   VP  V K+R 
Sbjct: 367 TTDIIVGYPNETEEQFEETLSLYREVGFESAFTYIYSPREGTPAAKMNDNVPMEVKKERL 426

Query: 408 RELTSVFEAFT 418
           + L  +   ++
Sbjct: 427 QRLNQLVNEYS 437


>gi|448342799|ref|ZP_21531744.1| MiaB-like tRNA modifying enzyme [Natrinema gari JCM 14663]
 gi|445624632|gb|ELY78008.1| MiaB-like tRNA modifying enzyme [Natrinema gari JCM 14663]
          Length = 417

 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 128/389 (32%), Positives = 206/389 (52%), Gaps = 29/389 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D +EEAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGC--VPQGSR-DLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
                 L + GC  + QG   D  +++G       Q+    EV E    G E        
Sbjct: 65  ADETADLFITGCMALAQGEAFDRADVDG-------QVLHWDEVPEAVTNG-ECPTTTPDA 116

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
            P LD         V ILPI  GC+  C+YC TK A G + S ++E  V + R +I  G 
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGA 169

Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
           KE+ ++ +DTG YG D G   L  LL  I      DG   +R+GM NP  +    +E+A 
Sbjct: 170 KEIRITGQDTGVYGWDEGNRKLHRLLEEIC---EIDGDFRVRVGMANPKGVHGIREELAA 226

Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           V   +  +Y FLH PVQSGSD VL  M R++ ++++  VV+T  + +    ++TD I GF
Sbjct: 227 VFAEYDELYDFLHAPVQSGSDDVLGDMRRQHQVAEYVEVVETFDDYLDYWTLSTDFIVGF 286

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 412
           P ET+ D  Q++ L++E +  ++++++F  RPGT AA +K +   V K+RS+E+++    
Sbjct: 287 PTETERDHEQSMALLRETRPEKINVTRFSKRPGTDAAELKGLGGTVKKERSKEMSAVKRD 346

Query: 413 -VFEAFTPYLGMEGRVERIWITEIAADGI 440
            V +A+   +G E R + + + E  AD +
Sbjct: 347 LVADAYADMVG-EVREDVLVVEEGTADSV 374


>gi|440912126|gb|ELR61722.1| hypothetical protein M91_07895, partial [Bos grunniens mutus]
          Length = 277

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 85/156 (54%), Positives = 119/156 (76%)

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
           KE+A++L HP VY+FLH+PVQS SD VL  M REY ++DF+ VVD L + VPG+ IATDI
Sbjct: 1   KEMAKILHHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKDKVPGITIATDI 60

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
           ICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R++EL+ 
Sbjct: 61  ICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKELSR 120

Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           +F ++ PY    G+ +++ +TE + D    V   +F
Sbjct: 121 IFHSYNPYDHKIGQRQQVLVTEESFDSKFYVAHNRF 156


>gi|379003862|ref|YP_005259534.1| MiaB-like tRNA modifying enzyme, archaeal-type [Pyrobaculum
           oguniense TE7]
 gi|375159315|gb|AFA38927.1| MiaB-like tRNA modifying enzyme, archaeal-type [Pyrobaculum
           oguniense TE7]
          Length = 416

 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 200/362 (55%), Gaps = 32/362 (8%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           Y++T+GC   ++D+E +  +L   G    +  E+AD+ +I TC V+   +      I + 
Sbjct: 5   YIETYGCWLAKADAEIIRQRL---GLVAVERPEDADVVMIYTCAVREDGEVRQLARIREL 61

Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
              +K +VVAGC       L +L   +I       R++   E  ++G + R +  K LP 
Sbjct: 62  AGLRKEVVVAGC-------LAKLRPYTIKSAAPNARLLYPSE--VEGGQKREM--KVLPR 110

Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADGV 238
            +         +  +P+ VGCLG CT+C TK+ RG  G   S   + +V  V+  +A G 
Sbjct: 111 YE------GGVIYTVPLQVGCLGNCTFCATKYTRGGAGYVKSANPDDVVRHVKEAVARGA 164

Query: 239 KEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
           KE++L+ +D   YG D+    G +LP LL  I+ E+  +G   +RIGM+ P         
Sbjct: 165 KEIYLTGQDVITYGFDMRWRPGWSLPDLLERILREV--EGEYRVRIGMSEPWVFARFADR 222

Query: 295 IAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IATDI 352
           + ++++    VY + H+PVQSGSD VL AM R YT+ ++R +V  + + +     +ATDI
Sbjct: 223 LLDIVKGDRRVYRYFHLPVQSGSDKVLRAMGRRYTVDEYRELVRKIRKTLGEFAFVATDI 282

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 411
           I GFPGE ++DF ++V L++E +  +VH+++F PRP T AA M ++VP A  K+RS+ L+
Sbjct: 283 IVGFPGEAEDDFWESVKLVEELQLDKVHVARFSPRPFTEAAVMPRQVPDAEKKRRSKILS 342

Query: 412 SV 413
            V
Sbjct: 343 EV 344


>gi|145591528|ref|YP_001153530.1| RNA modification protein [Pyrobaculum arsenaticum DSM 13514]
 gi|145283296|gb|ABP50878.1| RNA modification enzyme, MiaB family [Pyrobaculum arsenaticum DSM
           13514]
          Length = 416

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 200/362 (55%), Gaps = 32/362 (8%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           Y++T+GC   ++D+E +  +L   G    +  E+AD+ +I TC V+   +      I + 
Sbjct: 5   YIETYGCWLAKADAEIIRQRL---GLVAVERPEDADVVMIYTCAVREDGEVRQLARIREL 61

Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
              +K +VVAGC       L +L   +I       R++   E  ++G + R +  K LP 
Sbjct: 62  AGLRKEVVVAGC-------LAKLRPYTIKSAAPNARLLYPSE--VEGGQKREM--KVLPR 110

Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADGV 238
            +         +  +P+ VGCLG CT+C TK+ RG  G   S   + +V  V+  +A G 
Sbjct: 111 YE------GGVIYTVPLQVGCLGNCTFCATKYTRGGAGYVKSANPDDVVRHVKEAVARGA 164

Query: 239 KEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
           KE++L+ +D   YG D+    G +LP LL  I+ E+  +G   +RIGM+ P         
Sbjct: 165 KEIYLTGQDVITYGFDMRWRPGWSLPDLLERILREV--EGEYRVRIGMSEPWVFARFADR 222

Query: 295 IAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IATDI 352
           + ++++    VY + H+PVQSGSD VL AM R YT+ ++R +V  + + +     +ATDI
Sbjct: 223 LLDIVKGDRRVYRYFHLPVQSGSDRVLRAMGRRYTVDEYRELVRKIRKTLGEFAFVATDI 282

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 411
           I GFPGE ++DF ++V L++E +  +VH+++F PRP T AA M ++VP A  K+RS+ L+
Sbjct: 283 IVGFPGEAEDDFWESVKLVEELQLDKVHVARFSPRPFTEAAVMPRQVPDAEKKRRSKILS 342

Query: 412 SV 413
            V
Sbjct: 343 EV 344


>gi|52080307|ref|YP_079098.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           licheniformis DSM 13 = ATCC 14580]
 gi|319645912|ref|ZP_08000142.1| hypothetical protein HMPREF1012_01176 [Bacillus sp. BT1B_CT2]
 gi|404489194|ref|YP_006713300.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           licheniformis DSM 13 = ATCC 14580]
 gi|423682247|ref|ZP_17657086.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           licheniformis WX-02]
 gi|81385531|sp|Q65JE5.1|MIAB_BACLD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|52003518|gb|AAU23460.1| conserved hypothetical protein [Bacillus licheniformis DSM 13 =
           ATCC 14580]
 gi|52348185|gb|AAU40819.1| tRNA methylthiotransferase YmcB [Bacillus licheniformis DSM 13 =
           ATCC 14580]
 gi|317391662|gb|EFV72459.1| hypothetical protein HMPREF1012_01176 [Bacillus sp. BT1B_CT2]
 gi|383439021|gb|EID46796.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           licheniformis WX-02]
          Length = 509

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 194/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  TD++E+A++ L+NTC ++  +++ +   I  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDSTEDANVILLNTCAIRENAENKVFGEIGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ KK      L V GC+ Q     +R LK+   V ++ G   I R+ E++ E     E
Sbjct: 128 LKALKKDNPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSEAYLSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             + +  ++     +LPKVR  K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 MVIEVWSKEGDVIENLPKVRTGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  VL  M R+Y    +  +V  + + +P   +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSDVLKLMARKYDRERYLELVAKIKKAMPNASL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424

Query: 408 RELTSV 413
           + L  V
Sbjct: 425 QRLNEV 430


>gi|448459772|ref|ZP_21596822.1| MiaB-like tRNA modifying enzyme [Halorubrum lipolyticum DSM 21995]
 gi|445808224|gb|EMA58298.1| MiaB-like tRNA modifying enzyme [Halorubrum lipolyticum DSM 21995]
          Length = 440

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 197/370 (53%), Gaps = 22/370 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T +++T+GCS N+ +S  +   L   G+   D  E+AD+ ++NTCTV   ++  M     
Sbjct: 3   TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           + ++    LVV GC+     +  E   V      +I    EV    L G E   +     
Sbjct: 63  ELEAETAELVVTGCMALAQGEAFEEADVD----AEILHWDEVPSHVLNG-ECPTVTPDAE 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S +VE+ V + R ++  G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVETNVEKARALVHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   LP LL+ I      DG   +R+GM NP  I    +E+A+V
Sbjct: 171 EIRVTGQDTGVYGWDKGDRKLPELLDRI---CDIDGEFRVRLGMANPGGIHGIHEELADV 227

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
             R+  +Y F+H PVQSGSD VL  M R++ +  FR VV T  + +    ++TD I GFP
Sbjct: 228 FARNEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVATFDDRLDHWTLSTDFIVGFP 287

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
            E++ D  ++++L+ E +  ++++++F  RPGT AA MK +   V K+RS+ ++      
Sbjct: 288 TESEADHERSMDLLTEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKMEV 347

Query: 413 VFEAFTPYLG 422
           V EA+   +G
Sbjct: 348 VGEAYESMVG 357


>gi|392960658|ref|ZP_10326124.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
           fermentans DSM 17108]
 gi|421054584|ref|ZP_15517551.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelosinus fermentans B4]
 gi|421057354|ref|ZP_15520198.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
           fermentans B3]
 gi|421065507|ref|ZP_15527248.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
           fermentans A12]
 gi|421071447|ref|ZP_15532565.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
           fermentans A11]
 gi|392440686|gb|EIW18355.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelosinus fermentans B4]
 gi|392447074|gb|EIW24337.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
           fermentans A11]
 gi|392454794|gb|EIW31613.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
           fermentans DSM 17108]
 gi|392458761|gb|EIW35255.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
           fermentans A12]
 gi|392463262|gb|EIW39232.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
           fermentans B3]
          Length = 458

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/392 (32%), Positives = 201/392 (51%), Gaps = 31/392 (7%)

Query: 45  LSKTGSLSPKIPGTE---------TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
           +SK    + +IP  E         T Y  T+GC  NQ DSE +AGQL + GY  T++ E+
Sbjct: 1   MSKPDQYNVEIPSNEVKDSNIKYFTTY--TYGCQMNQHDSERLAGQLKSIGYEYTESLED 58

Query: 96  ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVS 148
           A   LINTC V+  ++  +   I + K+ K       + +AGC+ Q  ++   K+   + 
Sbjct: 59  ASFILINTCCVRESAEKKIYGKIGELKNLKVSNPNLIIAIAGCMAQKDKEKLFKKAPHID 118

Query: 149 -IVGVQQIDRVVEVVEE--TLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGA 205
            I+G   + ++VE+V+E    K   + +  + +  A D+P +RR K    +PI  GC   
Sbjct: 119 LIIGTHNVHQLVEIVKEFEESKDRVLAVWDQAERLAPDVPTIRRGKISAWVPIMYGCNNF 178

Query: 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV--NLPILL 263
           CTYC   + RG   S  +  ++  +  +  DG KE+ L  ++  +YG D     +   LL
Sbjct: 179 CTYCIVPYVRGRERSRPLHDIIEEIHQLGLDGFKEITLLGQNVNSYGNDTKEYGDFADLL 238

Query: 264 NAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA 322
            A+         T+ R+  MT+ P  +   K I  +L    +    H+PVQSGSDA+L  
Sbjct: 239 KAV-----DQVETIERVRYMTSHPRDIND-KVINTILNSKKICDHFHLPVQSGSDAILKM 292

Query: 323 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382
           MNR YT   +R +V  + + +P   + TDII GFPGE+DE F +T+  +KE +F   +  
Sbjct: 293 MNRGYTTDYYRELVRKIRKAIPHASLTTDIIVGFPGESDELFQETLEFLKEIRFDASYTF 352

Query: 383 QFYPRPGTPAARM-KKVPSAVVKKRSRELTSV 413
            +  R GTPAA M  ++P  V K+R ++L  V
Sbjct: 353 LYSKRSGTPAATMTDQIPLVVKKERLQKLMDV 384


>gi|76154241|gb|AAX25732.2| SJCHGC04814 protein [Schistosoma japonicum]
          Length = 350

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 102/196 (52%), Positives = 131/196 (66%), Gaps = 20/196 (10%)

Query: 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
           LL  +V  +PP    MLR+GMTNPP+IL+ L EIAEVL HP VYSFLH+PVQSGSDAVL 
Sbjct: 24  LLAGLVPLIPP--GCMLRLGMTNPPYILDQLVEIAEVLSHPRVYSFLHIPVQSGSDAVLD 81

Query: 322 AMNREYTLSDFRTVVDTLIELVP-----------------GMQIATDIICGFPGETDEDF 364
           AM REYT+ +F TVVD L++ V                   + IATD+ICGFP ET+++F
Sbjct: 82  AMKREYTVEEFSTVVDYLMKNVKPPSLPPYALDDAPNGSGALTIATDVICGFPTETNKNF 141

Query: 365 NQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTPYLGM 423
            +T  LIK+Y+FP +HI+QF+ RPGTPAA M +K  S+ VK R+R L  +F ++  Y G 
Sbjct: 142 EETFELIKKYRFPVLHINQFFARPGTPAANMSRKANSSEVKHRTRRLHDLFRSYRTYDGR 201

Query: 424 EGRVERIWITEIAADG 439
            G   R+ ITE + DG
Sbjct: 202 IGCEVRVLITEPSFDG 217


>gi|448435830|ref|ZP_21586898.1| MiaB-like tRNA modifying enzyme [Halorubrum tebenquichense DSM
           14210]
 gi|445683265|gb|ELZ35665.1| MiaB-like tRNA modifying enzyme [Halorubrum tebenquichense DSM
           14210]
          Length = 450

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/371 (34%), Positives = 194/371 (52%), Gaps = 24/371 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T +++T+GCS N+ +S  +   L   G+   D  E+AD+ ++NTCTV   ++  M     
Sbjct: 3   TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
           +       LVV GC+      L + E  +   V  +I    EV    L G E   +    
Sbjct: 63  ELSDITAELVVTGCMA-----LAQGEQFAEADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
            P LD         V ILPI  GC+  C+YC TK A G + S ++E  V + R ++  G 
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSIEENVEKARALVHAGA 169

Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
           KE+ ++ +DTG YG D G   LP LL+ I      DG   +R+GM NP  I     E+A+
Sbjct: 170 KELRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGDFRVRLGMANPGGIHGIHDELAD 226

Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           V   +  +Y F+H PVQSGSD VL  M R++ +  FR VV+T  + +    ++TD I GF
Sbjct: 227 VFADNEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 412
           P E DED   +++L+ E +  ++++++F  RPGT AA MK +   V K+RS+ ++     
Sbjct: 287 PTEDDEDHELSMDLLAEVRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKAMSELKME 346

Query: 413 -VFEAFTPYLG 422
            V EA+   +G
Sbjct: 347 VVGEAYESMVG 357


>gi|365154971|ref|ZP_09351367.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           smithii 7_3_47FAA]
 gi|363628896|gb|EHL79597.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           smithii 7_3_47FAA]
          Length = 514

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 120/371 (32%), Positives = 195/371 (52%), Gaps = 16/371 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG L   GY  TD  E+A++ L+NTC ++  +++ +   I  
Sbjct: 71  FYIRTYGCQMNEHDTEVMAGILMQLGYEPTDQPEDANVILLNTCAIRENAENKVFGEIGH 130

Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K  K  KP   L V GC+ Q     ++ LK+ + V +V G   I R+  ++ E     E
Sbjct: 131 LKPLKMEKPDLLLGVCGCMSQEESVVNKLLKQYQYVDMVFGTHNIHRLPHILNEAYMAKE 190

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVR+ K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 191 MVVEVWSKEGDVVENLPKVRQGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A G KE+ L  ++  AYG+D   ++   L  ++ +L       +R   ++P   
Sbjct: 251 EVRQLAAQGYKEITLLGQNVNAYGKDF-TDMEYGLGDLMDDLRKIDIPRIRFTTSHPRDF 309

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+YT   +  +V  + + +P + +
Sbjct: 310 DDHLIEV--LAKKGNLMEHIHLPVQSGSSEILKIMARKYTREQYLELVRKIKKAIPDVAL 367

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ET+E F +T++L++E  F   +   + PR GTPAA+MK  VP  V K+R 
Sbjct: 368 TTDIIVGFPNETEEQFEETLSLVREVGFESAYTFIYSPREGTPAAKMKDNVPMEVKKERL 427

Query: 408 RELTSVFEAFT 418
           + L  +    +
Sbjct: 428 QRLNELVNELS 438


>gi|15643593|ref|NP_228639.1| hypothetical protein TM0830 [Thermotoga maritima MSB8]
 gi|418045000|ref|ZP_12683096.1| RNA modification enzyme, MiaB family [Thermotoga maritima MSB8]
 gi|14916854|sp|Q9WZT7.1|MTAB_THEMA RecName: Full=Threonylcarbamoyladenosine tRNA methylthiotransferase
           MtaB; AltName: Full=tRNA-t(6)A37 methylthiotransferase
 gi|4981362|gb|AAD35912.1|AE001750_6 conserved hypothetical protein [Thermotoga maritima MSB8]
 gi|351678082|gb|EHA61229.1| RNA modification enzyme, MiaB family [Thermotoga maritima MSB8]
          Length = 434

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 120/356 (33%), Positives = 195/356 (54%), Gaps = 17/356 (4%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T+ ++TFGC  NQ +SEYMA QL   GY +  +   A  +++N+C V    +  +  LI
Sbjct: 2   KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGNAA-YYIVNSCAVTKEVEKKVKRLI 60

Query: 119 AKCKSAKK--PLVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
              ++  K   +++ GC  Q S D  K L    ++G+ +   +V+ +  +L G +  ++ 
Sbjct: 61  KSIRNRNKNAKIILTGCFAQLSPDEAKNLPVDMVLGIDEKKHIVDHIN-SLNGKQQVVVS 119

Query: 176 RKKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVR 231
               P  +  KV+    ++    + +  GC   CTYC  + ARG  + S  +E       
Sbjct: 120 EPGRPVYE--KVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEEFA 177

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
            ++  G KE+ ++  + G YG+D+G +L  LL  ++ ++P  G   +R+   N   + + 
Sbjct: 178 EMVMKGYKEIVITGVNLGKYGKDMGSSLAELLK-VIEKVP--GDYRVRLSSINVEDVNDE 234

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           +  +    R+P +   LH+ VQSGSD VL  M R+Y +SDF  VVD L  + P   I TD
Sbjct: 235 I--VKAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYKISDFMRVVDKLRSIDPDFSITTD 292

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           II GFPGETD DF +T+ L+++ +F +VHI +F PRPGTPA+RM+  VP +  K+R
Sbjct: 293 IIVGFPGETDADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVPESKKKER 348


>gi|402584247|gb|EJW78189.1| radical sam protein, partial [Wuchereria bancrofti]
          Length = 224

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 123/168 (73%), Gaps = 1/168 (0%)

Query: 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
           MLR+GMTNPP+IL+ L+EI+E+L HP VYSFLH+PVQS SDAVLS M REYT  DF  VV
Sbjct: 1   MLRLGMTNPPYILDFLEEISEILNHPRVYSFLHIPVQSASDAVLSDMKREYTCIDFCRVV 60

Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396
           D +I+ VP + IATD IC +P ET+ DF +++ L+++Y+FP + I+QFYPR GTPAA +K
Sbjct: 61  DYMIQNVPNIYIATDFICAYPTETESDFEESMALVRKYRFPSLFINQFYPRIGTPAANLK 120

Query: 397 KVPSAVVKKRSRELTSVFEAFTPYLGME-GRVERIWITEIAADGIHLV 443
           K+ +   ++R+ E++S+F +++ Y     G   R+ + E+A D  H V
Sbjct: 121 KIDTIEARRRTAEMSSLFRSYSRYNKERIGEKHRVLVCELATDQQHYV 168


>gi|33862596|ref|NP_894156.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Prochlorococcus marinus str. MIT 9313]
 gi|81577894|sp|Q7V8L8.1|MIAB_PROMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|33634512|emb|CAE20498.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 480

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 132/408 (32%), Positives = 209/408 (51%), Gaps = 28/408 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           + +++TFGC  N++DSE MAG L A GY       EAD+ L NTCT++  ++  + + + 
Sbjct: 30  SFWIQTFGCQMNKADSERMAGILEAMGYHEAPAELEADLVLYNTCTIRDNAEQKVYSYLG 89

Query: 120 KCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
           +    K+      LVVAGCV Q  G   L+ +  + +V G Q  +R+  ++ +   G +V
Sbjct: 90  RQARRKRTHPHLKLVVAGCVAQQEGEALLRRIPELDLVMGPQHANRLEALLTQVDNGQQV 149

Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
                  +   DL   RR+  +    +NV  GC   CTYC     RG   S + E++   
Sbjct: 150 VATDDNHILE-DLTTARRDSTI-CAWVNVIYGCNERCTYCVVPSVRGKEQSRSPEAIRLE 207

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMT 283
           +  + A G +E+ L  ++  AYGRD+      G     L + +      +G   +R   +
Sbjct: 208 IEGLAARGFREITLLGQNIDAYGRDLPGITPEGRRQNTLTDLLHHIHDVEGIERIRFATS 267

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           +P +  E L E    L  P V    H+P QSG + VL AM R YT+  +R +V+ + EL+
Sbjct: 268 HPRYFTERLIEACFDL--PKVCEHFHIPFQSGDNDVLKAMARGYTVERYRRIVNRIRELM 325

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 402
           P   I+TD+I  FPGETD  F  T+NL++E  F QV+ + + PRP TPAA    ++P AV
Sbjct: 326 PDAAISTDVIVAFPGETDAQFQNTLNLLEEVGFDQVNTAAYSPRPNTPAATWSNQLPEAV 385

Query: 403 VKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
             +R ++L ++ E  A        G+VE     ++ A+GI+  + +Q 
Sbjct: 386 KVERLKQLNALVERIALQRNSRYSGKVE-----QVLAEGINPKKPQQL 428


>gi|418324135|ref|ZP_12935386.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           pettenkoferi VCU012]
 gi|365227632|gb|EHM68824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           pettenkoferi VCU012]
          Length = 529

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/381 (32%), Positives = 194/381 (50%), Gaps = 21/381 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG LSA GY  T++   AD+ LINTC ++  +++ + + I 
Sbjct: 84  TFMIKTYGCQMNAHDTEVMAGILSALGYQPTEDINTADVILINTCAIRENAENKVFSEIG 143

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  K+      L V GC+ Q     ++ LK  + V ++ G   I R+ E++EE    K
Sbjct: 144 NLKHLKRERPDVLLGVCGCMSQEESVVNKILKSFQNVDMIFGTHNIHRLPEILEEAYLSK 203

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E ++
Sbjct: 204 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRKPEDII 263

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G +EV L  ++  +YG+DI   L   L  ++A++       +R   ++P  
Sbjct: 264 QEVRELAREGYQEVTLLGQNVNSYGKDID-GLDYGLGDLLADISKIDIPRVRFTTSHPWD 322

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  + +   +   +H+PVQSG++AVL  M R+YT   +  +VD +   +P + 
Sbjct: 323 FTDRMIEV--IAQGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLNLVDRIKAQIPDVA 380

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T++L  E  F   +   +  R GTPAARMK  VP  V K R
Sbjct: 381 LTTDIIVGYPNETEEQFEETLSLYDEVGFEHAYTYLYSERDGTPAARMKDDVPKEVKKDR 440

Query: 407 SRELTSVF-----EAFTPYLG 422
            + L         EA  PY G
Sbjct: 441 LQRLNRKVAAYSGEAMKPYEG 461


>gi|448394368|ref|ZP_21568173.1| MiaB-like tRNA modifying enzyme [Haloterrigena salina JCM 13891]
 gi|445662410|gb|ELZ15178.1| MiaB-like tRNA modifying enzyme [Haloterrigena salina JCM 13891]
          Length = 417

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/387 (32%), Positives = 204/387 (52%), Gaps = 25/387 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D ++EAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHYRVDGADEADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
                 L + GC+   QG    +E     + G  Q+    EV E    G E         
Sbjct: 65  SEETADLFITGCMALAQG----EEFRAADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S  +E  V + R +I  G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPPIEENVEKARALIHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
           E+ ++ +DTG YG D G      L + + E+  +G   +R+GM NP  +    +E+AEV 
Sbjct: 171 EIRITGQDTGVYGWDEGDRKLHRLLSEICEI--EGDFRVRVGMANPKGVHGIREELAEVF 228

Query: 300 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
             +  +Y FLH PVQSGS+ VL  M R++ + ++  VV+T  + +    ++TD I GFP 
Sbjct: 229 AENEELYDFLHAPVQSGSNDVLGDMRRQHQVDEYVEVVETFDDALDYWTLSTDFIVGFPT 288

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----V 413
           ETD D  Q++ L++E +  ++++++F  RPGT AA MK +   V K+RS+E++      V
Sbjct: 289 ETDRDHAQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSEAKREIV 348

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGI 440
            EA+   +G E R + + + +  AD +
Sbjct: 349 REAYADMVG-EVREDCLVVEQGTADSV 374


>gi|448502690|ref|ZP_21612711.1| MiaB-like tRNA modifying enzyme [Halorubrum coriense DSM 10284]
 gi|445693887|gb|ELZ46027.1| MiaB-like tRNA modifying enzyme [Halorubrum coriense DSM 10284]
          Length = 440

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/380 (32%), Positives = 195/380 (51%), Gaps = 42/380 (11%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T +++T+GCS N+ +S  +   L   G+   D  E+AD+ ++NTCTV   ++  M     
Sbjct: 3   TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           +       LVV GC+      L + E  +   V                 +  +LH  ++
Sbjct: 63  ELSETTAELVVTGCMA-----LAQGEMFADADV-----------------DAEILHWDEV 100

Query: 180 PAL----DLPKVRRNK------FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           PA     + P V  +        V +LPI  GC+  C+YC TK A G + S  V   V +
Sbjct: 101 PAYVLNGECPTVTPDAEPVLDGVVGLLPIARGCMSNCSYCITKFATGRVDSPPVAENVEK 160

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            R ++  G KE+ ++ +DTG YG D G   LP LL+ I      DG   +R+GM NP  I
Sbjct: 161 ARALVHAGAKEIRVTGQDTGVYGWDDGDRKLPELLDRIC---DIDGEFRVRLGMANPGGI 217

Query: 289 LEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
               +E+AEV   +  +Y F+H PVQSGSD VL  M R++ +  FR VVDT  E +    
Sbjct: 218 HGIHEELAEVFAENEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVDTFDERLDHWT 277

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           ++TD I GFP E++ D  ++++L+ E +  ++++++F  RPGT AA MK +   V K+RS
Sbjct: 278 LSTDFIVGFPTESEADHERSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERS 337

Query: 408 RELTS-----VFEAFTPYLG 422
           + ++      V EA+   +G
Sbjct: 338 KAMSELKMEVVGEAYESMVG 357


>gi|302808877|ref|XP_002986132.1| hypothetical protein SELMODRAFT_446506 [Selaginella moellendorffii]
 gi|300145991|gb|EFJ12663.1| hypothetical protein SELMODRAFT_446506 [Selaginella moellendorffii]
          Length = 936

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 135/337 (40%), Positives = 167/337 (49%), Gaps = 127/337 (37%)

Query: 88  ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGV 147
           A++D+ + AD+WLINTCTVK+P+   M+TLI K K+A  PLV                  
Sbjct: 2   AISDSPQRADLWLINTCTVKAPT---METLICKGKAASIPLV------------------ 40

Query: 148 SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 207
                 + ++ VE++                                  PINVGCLGACT
Sbjct: 41  ------RKNKFVEII----------------------------------PINVGCLGACT 60

Query: 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267
           YCKTKHARGHLGSYTV++LV R++TV+++               GRDIG N+P LL A+V
Sbjct: 61  YCKTKHARGHLGSYTVDTLVQRLKTVVSE---------------GRDIGANIPALLRALV 105

Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 327
           A LP       +   +N      HL        HPCVY FLHV VQSG D+VL  M REY
Sbjct: 106 AALP----HRQKYNASN-----LHLTASGGNGCHPCVYLFLHVLVQSGRDSVLQGMKREY 156

Query: 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
           T S+FR +VDTL  LVP              ET                           
Sbjct: 157 TFSEFRKIVDTLTRLVP--------------ET--------------------------- 175

Query: 388 PGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME 424
            GTPAA MK+VP+  VKKRSR LTS+FE+FTPY GME
Sbjct: 176 -GTPAALMKRVPTLEVKKRSRSLTSLFESFTPYAGME 211


>gi|448350753|ref|ZP_21539564.1| MiaB-like tRNA modifying enzyme [Natrialba taiwanensis DSM 12281]
 gi|445635625|gb|ELY88792.1| MiaB-like tRNA modifying enzyme [Natrialba taiwanensis DSM 12281]
          Length = 417

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/387 (33%), Positives = 205/387 (52%), Gaps = 25/387 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D  +EAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHHQVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
                 L + GC  + QG    +E     + G  Q+    EV E    G E         
Sbjct: 65  SEETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TKHA G + S ++E  V + R +I  G K
Sbjct: 118 PILD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPSIEENVEKARALIHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
           E+ ++ +DTG YG D G      L A + EL  +G   +R+GM NP  +    +E+A+V 
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADVF 228

Query: 300 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
             +  +Y FLH PVQSGSD VL  M R++ + ++  VV+T  E +    ++TD I GFP 
Sbjct: 229 AEYDELYGFLHAPVQSGSDDVLGDMRRQHQVEEYVEVVETFDEALDYWTLSTDFIVGFPT 288

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----V 413
           ETD D  Q++ L++E +  ++++++F  RPGT AA MK +   + K+RS+E++      V
Sbjct: 289 ETDHDHEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKEMSEVKRDIV 348

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGI 440
            +A+   +G E R + + + E  AD +
Sbjct: 349 ADAYADMVG-ERREDVLVVEEGTADSV 374


>gi|323141892|ref|ZP_08076753.1| tRNA methylthiotransferase YqeV [Phascolarctobacterium
           succinatutens YIT 12067]
 gi|322413639|gb|EFY04497.1| tRNA methylthiotransferase YqeV [Phascolarctobacterium
           succinatutens YIT 12067]
          Length = 437

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 134/398 (33%), Positives = 197/398 (49%), Gaps = 27/398 (6%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I   T GC  NQ+D+  M G   A GY +    E AD++L+NTC V +  Q     +I +
Sbjct: 4   IAFYTLGCKVNQADTASMEGIFRASGYEVVPFGEPADVYLVNTCVVTNTGQRKSRQIINR 63

Query: 121 CKSAKKPL---VVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLH 175
                 PL   VV GC PQ +  +++ +EGV  I+G Q+  R+VE+VEE L+     +L 
Sbjct: 64  A-VRHNPLSLVVVTGCYPQTAPEEVRAIEGVDVIIGNQERGRIVELVEEALEHKRTEILD 122

Query: 176 RKKLPALDLP------KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
             +   +D            +K    L I  GC   CTYC    ARG L S +++S+   
Sbjct: 123 NVQQMTVDTKFEELGVGTETDKTRAFLKIQEGCNQYCTYCIIPFARGPLRSRSLDSIREE 182

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLP--ILLNAIVAELPPDGSTMLRIGMTNP-- 285
           V  ++A G KEV L     G YG+++        L +A+ A L  +G   +R+G      
Sbjct: 183 VGKLVAAGYKEVVLIGIHLGCYGKELAKEGKHVTLYDAVKAALSVEGVQRVRLGSLESVE 242

Query: 286 --PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
             P +L+ + E   + RH      LH+P+QSG D +L AM+R Y    F  +V+ +   V
Sbjct: 243 VEPRLLQLMAEEPRLQRH------LHLPLQSGCDKILRAMHRPYDTKRFTELVNEIRAQV 296

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402
           P + I TD+I GFPGE +EDF  T+   K+  F ++HI  +  R GTPAA MK +V  AV
Sbjct: 297 PDVAITTDVIVGFPGENEEDFATTLEFAKKCGFAKMHIFPYSKRKGTPAAEMKEQVDEAV 356

Query: 403 VKKRSRELTSVFEAFTPYL--GMEGRVERIWITEIAAD 438
             +R+  L  V E     +     G+VE +   +   D
Sbjct: 357 KSERAARLAKVDEELHQQMLQSTVGKVEEVLFEQPVDD 394


>gi|338730816|ref|YP_004660208.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga thermarum DSM
           5069]
 gi|335365167|gb|AEH51112.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga thermarum DSM
           5069]
          Length = 433

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/397 (31%), Positives = 209/397 (52%), Gaps = 18/397 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ----SAMDT 116
           IY+KT+GC  N++D+E MAG L+  G+ + D+ ++AD+ ++NTC V+  SQ    SA+  
Sbjct: 3   IYIKTYGCQMNENDTEIMAGILAQKGHQIVDDLDQADVVILNTCVVRQKSQDKYHSALGQ 62

Query: 117 LIAKCKSAKKPLV-VAGCVPQGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL 174
           L+   K  K  LV ++GC      +    +G   V G + I  V EV+E    G +V  L
Sbjct: 63  LLKMKKEGKIKLVGISGCGANLEAEQLIKDGADFVLGSRSILAVAEVLERAASGEKVIYL 122

Query: 175 HRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
                  +  LP+ R +     + I  GC   CTYC   + RG   S  +E ++  V+ +
Sbjct: 123 EDTICSDMSSLPRSRSSTHHAWVTIIHGCNRFCTYCIVPYTRGREKSRPMEDVLAEVKKL 182

Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
              GVKE+    ++  AYG+D+  G +L  L+N   +E+  +G   +    + P  I + 
Sbjct: 183 AESGVKEITFLGQNVDAYGKDLKDGTSLAKLINK-ASEI--EGIERIWFLTSYPTDITDE 239

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           L  I  V ++P      H+P+QSGS+ +L  MNR YT   F  +V+ + ++VP   I++D
Sbjct: 240 L--IETVAKNPKAAKSFHIPIQSGSNRILRLMNRRYTREQFAELVEKIRKIVPQASISSD 297

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRE 409
           +I GFP ET+ED  QTV ++K  +F +++++ + PRPGT A++  K  VP  V  +R  E
Sbjct: 298 VIVGFPTETEEDHQQTVEIVKTLQFERLNLAIYSPRPGTVASKYFKDDVPREVKVRRLNE 357

Query: 410 LTSVFEAFTPYLGME--GRVERIWITEIAADGIHLVR 444
           L  + +     L      +V  +++     DG++  R
Sbjct: 358 LLELQKEINKKLNERYLNQVVELFVEGKTKDGLYYGR 394


>gi|261419508|ref|YP_003253190.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
           sp. Y412MC61]
 gi|319766323|ref|YP_004131824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC52]
 gi|261375965|gb|ACX78708.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC61]
 gi|317111189|gb|ADU93681.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC52]
          Length = 531

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 190/368 (51%), Gaps = 16/368 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  TD  EEA++ L+NTC ++  +++ +   +  
Sbjct: 82  FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGELGY 141

Query: 121 CKSAKKP-----LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K  K       L V GC+ Q      + LK+ + V ++ G   I R+  ++ E     E
Sbjct: 142 LKPLKTTNPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 201

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVR+ K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 202 MVVEVWSKEGDVVENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 262 EVRQLAAQGYKEITLLGQNVNAYGKDF-TDIQYSLGDLMDELRKIDIARIRFTTSHPRDF 320

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+  + +   +   +H+PVQSGS  +L  M R+YT  ++  +V  +   +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVAL 378

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA MK  VP  V K+R 
Sbjct: 379 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDNVPMEVKKERL 438

Query: 408 RELTSVFE 415
           + L  + +
Sbjct: 439 KRLNDLVQ 446


>gi|383830897|ref|ZP_09985986.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Saccharomonospora xinjiangensis XJ-54]
 gi|383463550|gb|EID55640.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Saccharomonospora xinjiangensis XJ-54]
          Length = 502

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/372 (34%), Positives = 192/372 (51%), Gaps = 24/372 (6%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
           T T  ++TFGC  N  DSE +AGQL   GYAL  + E+ DI ++NTC V+  + + +   
Sbjct: 2   TRTYAIRTFGCQMNVHDSERLAGQLEDAGYALATDGEDPDIVVLNTCAVRENADNKLYGH 61

Query: 118 IAKCKSAK--KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
           +   ++AK  KP   + V GC+ Q  R   ++    V +V G   I  +  ++E      
Sbjct: 62  LGHLRAAKSAKPGMQIAVGGCLAQKDRGEIVRRAPWVDVVFGTHNISSLPVLLERARHNA 121

Query: 170 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           E  V +L   +     LP  R + +   + I+VGC   CT+C     RG         ++
Sbjct: 122 EAQVEILESLQTFPSTLPARRESAYSGWVSISVGCNNTCTFCIVPSLRGKERDRRPGEIL 181

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNP 285
             V  ++A+GV EV L  ++  +YG + G  L     A    L   GS   + R+  T+P
Sbjct: 182 AEVEALVAEGVLEVTLLGQNVNSYGVEFGDRL-----AFGKLLRSCGSVEGLERVRFTSP 236

Query: 286 ---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
               F  + +  +AE      V   LH+P+QSGSD VL AM R Y  S F +++D + + 
Sbjct: 237 HPAAFTDDVIDAMAETSN---VCHQLHMPLQSGSDRVLKAMRRSYRSSRFLSILDRVRDA 293

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 401
           +P   I TDII GFPGETDEDF QT++++++ +F      Q+ PRPGTPAA M  +VP  
Sbjct: 294 MPDAAITTDIIVGFPGETDEDFEQTLDVVRQARFSSAFTFQYSPRPGTPAAEMDGQVPKE 353

Query: 402 VVKKRSRELTSV 413
           VV++R   L  +
Sbjct: 354 VVQERYDRLVEL 365


>gi|448356310|ref|ZP_21545043.1| MiaB-like tRNA modifying protein [Natrialba chahannaoensis JCM
           10990]
 gi|445653343|gb|ELZ06214.1| MiaB-like tRNA modifying protein [Natrialba chahannaoensis JCM
           10990]
          Length = 417

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 199/370 (53%), Gaps = 26/370 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D  ++AD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHYRVDGPDDADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
            +    L + GC+   QG    +E     + G  Q+    EV E    G E         
Sbjct: 65  SAETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S ++E  V + R +I  G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   L  LL  I A    +G   +R+GM NP  +    +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEDICA---IEGDFRVRVGMANPKGVHGIREELADV 227

Query: 299 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              +  +Y+FLH PVQSGSD VL  M R++ +S++  V++T  +++    ++TD I GFP
Sbjct: 228 FAANDELYNFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIETFDDVLEYWTLSTDFIVGFP 287

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
            ET+ D  Q++ L++E +  +V++++F  RPGT AA MK +   V K RS+E+++     
Sbjct: 288 TETEHDHEQSMALLRETRPEKVNVTRFSKRPGTDAAEMKGLGGQVKKDRSKEMSAAKRDI 347

Query: 413 VFEAFTPYLG 422
           V EA+   +G
Sbjct: 348 VGEAYGDMVG 357


>gi|257076152|ref|ZP_05570513.1| oxidoreductase [Ferroplasma acidarmanus fer1]
          Length = 400

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 120/390 (30%), Positives = 197/390 (50%), Gaps = 32/390 (8%)

Query: 61  IYMKTFGCSHNQSDSE-YMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           IY +++GC+  +S+S  Y+   L      + ++ EEAD+ LI TC V   ++  M   I+
Sbjct: 3   IYFESYGCTLQKSESSLYLNKLLKDENNQIVNSPEEADLSLIGTCVVIKHTEDRMVKRIS 62

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
                   + V GC+   + +  E   V +                LK  E R  +   L
Sbjct: 63  SLSKVSGNVQVLGCLATVNGNTIESGNVQV----------------LKPREFRSFYEGDL 106

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
             +++    ++   + +PIN GC G+C +C +  ARG L S  ++ +V +V   +   +K
Sbjct: 107 DGIEI----KSDIYDGIPINQGCTGSCNFCISHIARGKLLSRGIDKIVNQVNMELDRNIK 162

Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
           E+ +SS DT AYG+DIG +L  L+N I +    D    LR+GM  P    + L ++ +  
Sbjct: 163 EIRISSLDTAAYGKDIGTDLAELVNRISS---IDRDFYLRVGMLEPRNTYDILDKLVDAY 219

Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
           RH  V+ FLH+PVQS  + VLSAMNREYT+ +   V     +  P M IATDII G+  +
Sbjct: 220 RHDRVFKFLHLPVQSAENNVLSAMNREYTIEEAEAVWQKFHDAFPDMSIATDIILGYYND 279

Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF----- 414
           +   F +T+  +++Y    +++++F PRP T       + S ++K+ S E+ S+      
Sbjct: 280 SRAGFEKTMKFLEKYNPDIINVTRFSPRPYTKDYNKTPLNSNLLKEWSNEIISLHREQME 339

Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHLVR 444
           +    YLG E   E++ ITE   +G  + R
Sbjct: 340 KKLDSYLGRE---EKVLITEKGKNGTMVGR 366


>gi|448366100|ref|ZP_21554354.1| MiaB-like tRNA modifying protein [Natrialba aegyptia DSM 13077]
 gi|445654709|gb|ELZ07560.1| MiaB-like tRNA modifying protein [Natrialba aegyptia DSM 13077]
          Length = 417

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 204/386 (52%), Gaps = 23/386 (5%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D  +EAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKKLP 180
                 L + GC+      L + E  +   V  Q+    EV E    G E         P
Sbjct: 65  SEETADLFITGCMA-----LAQGEEFAQADVDSQVLHWDEVPEAVTNG-ECPTTTPDAEP 118

Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
            LD         V ILPI  GC+  C+YC TKHA G + S ++E  V + R +I  G KE
Sbjct: 119 ILD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPSIEENVEKARALIHAGAKE 171

Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL- 299
           + ++ +DTG YG D G      L A + EL  +G   +R+GM NP  +    +E+A+V  
Sbjct: 172 IRITGQDTGVYGWDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADVFA 229

Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
            +  +Y FLH PVQSGSD VL  M R++ + ++  VV+T  E +    ++TD I GFP E
Sbjct: 230 EYDELYGFLHAPVQSGSDDVLGDMRRQHQVEEYVEVVETFDEALEYWTLSTDFIVGFPTE 289

Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VF 414
           TD D  Q++ L++E +  ++++++F  RPGT AA MK +   + K+RS+E++      V 
Sbjct: 290 TDHDHEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKEMSEVKRDIVA 349

Query: 415 EAFTPYLGMEGRVERIWITEIAADGI 440
           +A+   +G E R + + + E  AD +
Sbjct: 350 DAYADMVG-ERREDVLVVEEGTADSV 374


>gi|433445654|ref|ZP_20409960.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
           flavithermus TNO-09.006]
 gi|432000930|gb|ELK21818.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
           flavithermus TNO-09.006]
          Length = 526

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 192/366 (52%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  TD  E+A++ L+NTC ++  +++ +   I  
Sbjct: 85  FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 144

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K  K+      L V GC+ Q     ++ LK+ + V ++ G   I R+  +++E     E
Sbjct: 145 LKPLKQNNPDLLLGVCGCMSQEESVVNKILKQFQYVDMIFGTHNIHRLPYILKEAYMSKE 204

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVR+      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 205 MVVEVWSKEGDVIENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 264

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 265 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIPRIRFTTSHPRDF 323

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+  + +   +   +H+PVQSGS  VL  M R+YT   +  +V  + E +PG+ +
Sbjct: 324 DDRLIEV--LAKGGNLVEHIHLPVQSGSSEVLKMMARKYTREQYLELVRKIKEAIPGVAL 381

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F       + PR GTPAA+M   VP  V K+R 
Sbjct: 382 TTDIIVGFPNETDEQFEETLSLYREVEFDSAFTFIYSPREGTPAAKMVDNVPMEVKKERL 441

Query: 408 RELTSV 413
           + L ++
Sbjct: 442 QRLNAL 447


>gi|284163849|ref|YP_003402128.1| MiaB-like tRNA modifying enzyme [Haloterrigena turkmenica DSM 5511]
 gi|284013504|gb|ADB59455.1| MiaB-like tRNA modifying enzyme [Haloterrigena turkmenica DSM 5511]
          Length = 417

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 129/388 (33%), Positives = 203/388 (52%), Gaps = 27/388 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D  +EAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHYRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
                 L + GC+   QG    +E     + G  Q+    EV E    G E         
Sbjct: 65  SEETADLFITGCMALAQG----EEFRAADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S  +E  V + R +I  G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPPIEENVEKARALIHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   L  LL+ I A    +G   +R+GM NP  +    +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLSEICA---IEGDFRVRVGMANPKGVHGIREELAAV 227

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              +  +Y FLH PVQSGS+ VL  M R++ + ++  VV+T  + +    ++TD I GFP
Sbjct: 228 FAENEELYDFLHAPVQSGSNDVLGDMRRQHQVDEYVEVVETFDDALDYWTLSTDFIVGFP 287

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
            ETD D  Q++ L++E +  ++++++F  RPGT AA MK +   V K+RS+E++      
Sbjct: 288 TETDRDHAQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSEVKREI 347

Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGI 440
           V EA+   +G E R + + + E  AD +
Sbjct: 348 VREAYADMVG-EVREDCLVVEEGTADSV 374


>gi|345019810|ref|ZP_08783423.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Ornithinibacillus scapharcae TW25]
          Length = 525

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 121/364 (33%), Positives = 191/364 (52%), Gaps = 16/364 (4%)

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
           ++T+GC  N+ D+E MAG LS  GY  T  + EAD+ L+NTC ++  +++ +   I   K
Sbjct: 86  IRTYGCQMNEHDTEVMAGILSEMGYESTTETSEADLILLNTCAIRENAENKVFGEIGHLK 145

Query: 123 SAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
             K  KP   L V GC+ Q      R +K+ + + +V G   I R+  +V+E + G E  
Sbjct: 146 PLKTEKPDLILGVCGCMSQEESVVDRIMKKHQHIDLVFGTHNIHRLPNLVQEAMFGKEQV 205

Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           V +  ++     +LPK R+ K    + I  GC   CTYC     RG   S   + ++  +
Sbjct: 206 VEVWSKEGDIIENLPKARKGKIKAWVNIMYGCDKFCTYCIVPMTRGKERSRRPDDIIQEI 265

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           R + A+G +EV L  ++  AYG+D   ++      ++ ++       +R   ++P    +
Sbjct: 266 RHLAAEGYQEVTLLGQNVNAYGKDFE-DIDYRFGDLMDDIRKIDIPRIRFTTSHPRDFDD 324

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
           HL E+  + +   +   +H+PVQSGS  VL  MNR+YT  D+  VV  + E +P   + T
Sbjct: 325 HLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMNRKYTREDYLEVVRKIREAIPNATLTT 382

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
           DII GFP ETDE F +T+ L++E  F   +   + PR GTPAA+ K  VP  V K+R   
Sbjct: 383 DIIVGFPNETDEQFEETMTLVEEVGFEAAYTFIYSPREGTPAAKKKDDVPEEVKKQRLYR 442

Query: 410 LTSV 413
           L  +
Sbjct: 443 LNEL 446


>gi|212639354|ref|YP_002315874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
           flavithermus WK1]
 gi|229890441|sp|B7GJM6.1|MIAB_ANOFW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|212560834|gb|ACJ33889.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1]
          Length = 527

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 192/366 (52%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  TD  E+A++ L+NTC ++  +++ +   I  
Sbjct: 86  FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 145

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K  K+      L V GC+ Q     ++ LK+ + V ++ G   I R+  +++E     E
Sbjct: 146 LKPLKQNNPDLLLGVCGCMSQEESVVNKILKQFQYVDMIFGTHNIHRLPYILKEAYMSKE 205

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVR+      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 206 MVVEVWSKEGDVIENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 265

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 266 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIPRIRFTTSHPRDF 324

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+  + +   +   +H+PVQSGS  VL  M R+YT   +  +V  + E +PG+ +
Sbjct: 325 DDRLIEV--LAKGGNLVEHIHLPVQSGSSEVLKMMARKYTREQYLELVRKIKEAIPGVAL 382

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F       + PR GTPAA+M   VP  V K+R 
Sbjct: 383 TTDIIVGFPNETDEQFEETLSLYREVEFDSAFTFIYSPREGTPAAKMVDNVPMEVKKERL 442

Query: 408 RELTSV 413
           + L ++
Sbjct: 443 QRLNAL 448


>gi|217076413|ref|YP_002334129.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
           africanus TCF52B]
 gi|229891011|sp|B7IFC4.1|MIAB_THEAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|217036266|gb|ACJ74788.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermosipho africanus
           TCF52B]
          Length = 429

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/359 (32%), Positives = 196/359 (54%), Gaps = 25/359 (6%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            ++KT+GC  N++DSE     L   GY   +N  EADI ++NTC V+  ++    + I +
Sbjct: 3   FFIKTYGCQMNENDSEVARYYLEQEGYESAENENEADIVILNTCVVRKKAEDKFLSTIGE 62

Query: 121 CKSAKKPLVVAGCVPQGSRDLKE---LEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHR 176
            +   K + V GC   G+  LKE     GV+ ++G + I R+ E VE ++KG +  +   
Sbjct: 63  LRKKNKKIGVMGC---GAEKLKEDLFKRGVNFVIGTRAISRIPEAVELSIKGKKAAIFD- 118

Query: 177 KKLPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
            KL  +D   +  R +K    + I  GC   CTYC   + RG   S  ++ ++  V+ + 
Sbjct: 119 DKLDEIDYRNILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRKMDDILREVKNLS 178

Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG-MTNPP--FIL 289
            +GV+E+    ++  AYG+D+  G +L  LLN            + RI  +T+ P  F L
Sbjct: 179 LNGVREITYLGQNVDAYGKDLNDGTSLAKLLNE-----TKKIENIERIWFLTSYPTDFSL 233

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           +  +EIA   +   +   +H+PVQ GS+ +L  MNR YT+ ++  ++ ++ E+VP   I+
Sbjct: 234 DIAREIASSEK---IAKSIHLPVQHGSNKILKKMNRRYTIEEYYELIKSIREIVPDASIS 290

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--KKVPSAVVKKR 406
           +DII GFP ET++DF QTV L++E KF +++++ + PR GT A +     VP A+  +R
Sbjct: 291 SDIIVGFPDETEDDFQQTVKLVEEIKFERLNLAIYSPREGTIAWKYFEDNVPRAIKTRR 349


>gi|297530521|ref|YP_003671796.1| tRNA-i(6)A37 thiotransferase protein MiaB [Geobacillus sp. C56-T3]
 gi|448237459|ref|YP_007401517.1| tRNA-i(6)A37 modification enzyme [Geobacillus sp. GHH01]
 gi|297253773|gb|ADI27219.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. C56-T3]
 gi|445206301|gb|AGE21766.1| tRNA-i(6)A37 modification enzyme [Geobacillus sp. GHH01]
          Length = 531

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 190/368 (51%), Gaps = 16/368 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  TD  EEA++ L+NTC ++  +++ +   +  
Sbjct: 82  FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGELGY 141

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K  K       L V GC+ Q      + LK+ + V ++ G   I R+  ++ E     E
Sbjct: 142 LKPLKTTNPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 201

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVR+ K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 202 MVVEVWSKEGDVVENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 262 EVRQLAAQGYKEITLLGQNVNAYGKDF-TDIQYGLGDLMDELRKIDIARIRFTTSHPRDF 320

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+  + +   +   +H+PVQSGS  +L  M R+YT  ++  +V  +   +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVAL 378

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA MK  VP  V K+R 
Sbjct: 379 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDNVPMEVKKERL 438

Query: 408 RELTSVFE 415
           + L  + +
Sbjct: 439 KRLNDLVQ 446


>gi|409723333|ref|ZP_11270609.1| MiaB-like tRNA modifying enzyme [Halococcus hamelinensis 100A6]
 gi|448722015|ref|ZP_21704556.1| MiaB-like tRNA modifying enzyme [Halococcus hamelinensis 100A6]
 gi|445790418|gb|EMA41080.1| MiaB-like tRNA modifying enzyme [Halococcus hamelinensis 100A6]
          Length = 424

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 120/358 (33%), Positives = 189/358 (52%), Gaps = 23/358 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           + +++T+GC+ N+ +S  +  +L   G+   +  + AD+ ++NTCTV   +++ M     
Sbjct: 3   SYHIETYGCTANRGESREIERRLRDGGHHPAEGPKAADVAILNTCTVVEKTETNMLRRAR 62

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE--ETLKGHEVRLLHRK 177
           + +     LVV GC+     +        + G  ++  VV   E   T  G E       
Sbjct: 63  ELEEETADLVVTGCMALAQGEQFADVDARVCGWDEVPEVVRNGECPTTAPGTE------- 115

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
             P LD         V ILPI  GC+  C+YC TKHA G + S  +E  V + R ++  G
Sbjct: 116 --PILD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPPIEENVEKARALVHAG 166

Query: 238 VKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
            KE+ ++ +DTG YG D G   L  LL+ I      +G   +R+GM NP  +    +E+A
Sbjct: 167 AKEIRVTGQDTGVYGWDEGERKLHRLLDRI---CDIEGDFRVRVGMANPKGVHGIREELA 223

Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
           EV   +  +Y FLH+PVQSGSD VL AM R++ + +FR VV+T    +    +ATD I G
Sbjct: 224 EVFAENEKLYDFLHIPVQSGSDDVLGAMRRQHQVREFREVVETFDAHLDHWTLATDFIVG 283

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           FP ETD D   ++ L++E    ++++++F  RPGT AA MK +   + K+RS  +T +
Sbjct: 284 FPTETDADHEASMELLRETTPERINVTRFSKRPGTDAADMKGLGGTLKKERSSAMTDL 341


>gi|56419838|ref|YP_147156.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
           kaustophilus HTA426]
 gi|375008279|ref|YP_004981912.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           [Geobacillus thermoleovorans CCB_US3_UF5]
 gi|81347575|sp|Q5L0E8.1|MIAB_GEOKA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|56379680|dbj|BAD75588.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
 gi|359287128|gb|AEV18812.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Geobacillus thermoleovorans CCB_US3_UF5]
          Length = 531

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 190/368 (51%), Gaps = 16/368 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  TD  EEA++ L+NTC ++  +++ +   +  
Sbjct: 82  FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGELGY 141

Query: 121 CKSAKKP-----LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K  K       L V GC+ Q      + LK+ + V ++ G   I R+  ++ E     E
Sbjct: 142 LKPLKTTNPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 201

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVR+ K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 202 MVVEVWSKEGDVVENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 262 EVRQLAAQGYKEITLLGQNVNAYGKDF-TDIQYGLGDLMDELRKIDIARIRFTTSHPRDF 320

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+  + +   +   +H+PVQSGS  +L  M R+YT  ++  +V  +   +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVAL 378

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA MK  VP  V K+R 
Sbjct: 379 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDNVPMEVKKERL 438

Query: 408 RELTSVFE 415
           + L  + +
Sbjct: 439 KRLNDLVQ 446


>gi|124023692|ref|YP_001017999.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Prochlorococcus marinus str. MIT 9303]
 gi|229890600|sp|A2CB74.1|MIAB_PROM3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123963978|gb|ABM78734.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9303]
          Length = 480

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 131/408 (32%), Positives = 208/408 (50%), Gaps = 28/408 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           + +++TFGC  N++DSE MAG L A GY       EAD+ L NTCT++  ++  + + + 
Sbjct: 30  SFWIQTFGCQMNKADSERMAGILEAMGYHEAPAELEADLVLYNTCTIRDNAEQKVYSYLG 89

Query: 120 KCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
           +    K+      LVVAGCV Q  G   L+ +  + +V G Q  +R+  ++ +   G +V
Sbjct: 90  RQARRKRTHPHLKLVVAGCVAQQEGEALLRRIPELDLVMGPQHANRLEALLTQVDNGQQV 149

Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
                  +   DL   RR+  +    +NV  GC   CTYC     RG   S + E++   
Sbjct: 150 VATDDNHILE-DLTTARRDSTI-CAWVNVIYGCNERCTYCVVPSVRGKEQSRSPEAIRLE 207

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMT 283
           +  + A G +E+ L  ++  AYGRD+      G     L + +      +G   +R   +
Sbjct: 208 IEGLAARGFREITLLGQNIDAYGRDLPGITPEGRRQNTLTDLLHHIHDVEGIERIRFATS 267

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           +P +  E L E    L  P V    H+P QSG + VL AM R YT+  +R +V+ + EL+
Sbjct: 268 HPRYFTERLIEACFDL--PKVCEHFHIPFQSGDNDVLKAMARGYTVERYRRIVNRIRELM 325

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 402
           P   I+TD+I  FPGETD  F  T+NL++E  F QV+ + + PRP TPAA    ++P  V
Sbjct: 326 PDAAISTDVIVAFPGETDAQFQNTLNLVEEVGFDQVNTAAYSPRPNTPAATWSNQLPEVV 385

Query: 403 VKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
             +R ++L ++ E  A        G+VE     ++ A+GI+  + +Q 
Sbjct: 386 KVERLKQLNALVERVALQRNSRYSGKVE-----QVLAEGINPKKPQQL 428


>gi|222055074|ref|YP_002537436.1| MiaB-like tRNA modifying enzyme [Geobacter daltonii FRC-32]
 gi|221564363|gb|ACM20335.1| MiaB-like tRNA modifying enzyme [Geobacter daltonii FRC-32]
          Length = 438

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 195/368 (52%), Gaps = 18/368 (4%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T+ + T GC  NQ +S  MA  L   G+++      ADI++INTCTV S + +    LI
Sbjct: 7   QTVAITTLGCKINQFESAAMAETLGKEGFSIVPFDGAADIYVINTCTVTSKTDAESRRLI 66

Query: 119 AKC--KSAKKPLVVAGCVPQ-GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLL 174
            +   ++    +VV GC  Q    +L+++ GV+ I+G  +   + E++++   G   R+L
Sbjct: 67  RRASRQNPSAKIVVTGCYAQVAFEELQDMPGVNLILGNSEKKGIAEMLKDL--GENQRVL 124

Query: 175 HRKKLPALDLPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
                  L+    R   F E     L +  GC   C+YC   +ARG   S ++E  +  +
Sbjct: 125 VSDISRELNERGTRLESFAEHTRAFLQVQNGCDAFCSYCIVPYARGRSRSVSLEEALAGI 184

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
           RT    G KEV L+    GAYG D+   ++L  LLNA   E   +    +RIG   P  +
Sbjct: 185 RTFAERGFKEVVLTGIHLGAYGLDLNPPLSLLDLLNAAEKERLVE---RIRIGSVEPTEV 241

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L  I+ + +   V   LH+P+QSG D VL AMNR Y+ +DFR+V++ L   +P + I
Sbjct: 242 SDAL--ISFLAKSATVCPHLHIPLQSGHDRVLKAMNRNYSTADFRSVMEKLDTDLPSICI 299

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFPGETD++F      ++       H+  F PR GTPAA M+  V S+V+K+R+
Sbjct: 300 GTDIITGFPGETDDEFQDGYRFLESLPLAYFHVFPFSPRSGTPAATMEGHVHSSVIKERA 359

Query: 408 RELTSVFE 415
           + L  + E
Sbjct: 360 KALRKLSE 367


>gi|375085640|ref|ZP_09732272.1| MiaB-like tRNA modifying enzyme [Megamonas funiformis YIT 11815]
 gi|374567051|gb|EHR38283.1| MiaB-like tRNA modifying enzyme [Megamonas funiformis YIT 11815]
          Length = 433

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 124/383 (32%), Positives = 192/383 (50%), Gaps = 26/383 (6%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           + + T GC  NQ ++E M G     GY + D SE AD ++INTC+V    +     LI +
Sbjct: 4   VALTTLGCKVNQVETEIMEGLFRNRGYEIVDFSEPADFYIINTCSVTHLGERKSRQLIRR 63

Query: 121 CKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG-------H 169
                   ++A  GC  Q  S ++ ++EGV +V G +Q D++V++VE+  +        +
Sbjct: 64  ANRLNDNAIIAVTGCYAQIASDEISKIEGVRVVIGTKQRDKIVDLVEKAAREDGLFNEVN 123

Query: 170 EVRLLHR-KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
           +V  +H  + +P    P   R      L I  GC   C+YC   + RG + S  +ES+  
Sbjct: 124 DVMHMHEFEDIPLYGTPHRTR----AFLKIQDGCCNFCSYCIIPYTRGPIRSRKLESIKT 179

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            V  ++ +   E+  +    GAYGRD  G N+  L +A+   L  +    LR+G      
Sbjct: 180 AVDQLVEENFHEIVFTGIHLGAYGRDFKGENIS-LSDAVEICLANENLKRLRLGSLESIE 238

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           I   L E+ +   H      LH+P+Q+GSD +L AMNR YT  +F  +++ +   VP + 
Sbjct: 239 ISPRLLELVKT--HKRFTKHLHLPLQAGSDEILKAMNRHYTTEEFARLIENIRREVPDIA 296

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
           I+TDII GFPGETDE F +++   K   F ++H+  +  R GTPAA+M       VKK+ 
Sbjct: 297 ISTDIIVGFPGETDELFQKSLEFAKSMGFMKMHVFPYSKRAGTPAAKMTNQIDEAVKKQR 356

Query: 408 REL------TSVFEAFTPYLGME 424
             L       S  E +  +LG E
Sbjct: 357 VHLMQKMAEQSAVEFYQRFLGRE 379


>gi|303228532|ref|ZP_07315360.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516779|gb|EFL58693.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 438

 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 125/385 (32%), Positives = 204/385 (52%), Gaps = 23/385 (5%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           ++ Y+ T+GC  N +DSE ++ QL   GY  TD+ E AD+ L+NTC V+  +++ +   I
Sbjct: 2   KSYYIYTYGCQMNTADSERLSHQLEIVGYIPTDDVESADLILLNTCAVRETAETKVFGRI 61

Query: 119 AKCKSAK---KPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            + K  K   K L++A  GC+ Q ++    K    + IV G   I  + E++ E  + H+
Sbjct: 62  GELKRLKQKNKNLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQRTHK 121

Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            ++   +    LP L         F   +PI  GC   CTYC   H RG   S  VE++V
Sbjct: 122 HQINVDMDNTVLPELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
             V  + A G KE+ L  ++  +YG D   G +   L++A+   +P  G   +R   ++P
Sbjct: 180 KEVTELGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHP 236

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             + + +  I  + R   + + LH+P+QSGSD +L  MNR YT+  ++ ++    E +  
Sbjct: 237 QDMTKSM--IDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKN 294

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
           + + TDII GFPGET+EDF QT+ L+K+ ++   +   +  R GTPAA M ++VP  V +
Sbjct: 295 VVVTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQVPEEVKR 354

Query: 405 KRSRELTSVFEAFTPYLG--MEGRV 427
            R ++L  +    +  L   MEG+V
Sbjct: 355 VRLQQLMDIQNEISLELNKTMEGKV 379


>gi|381162577|ref|ZP_09871807.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Saccharomonospora azurea NA-128]
 gi|379254482|gb|EHY88408.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Saccharomonospora azurea NA-128]
          Length = 496

 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 127/373 (34%), Positives = 195/373 (52%), Gaps = 26/373 (6%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
           T T  ++TFGC  N  DSE +AGQL   GYA   + E+ D+ ++NTC V+  + + +   
Sbjct: 2   TRTYAIRTFGCQMNVHDSERLAGQLEDAGYAHAADGEDPDVVVLNTCAVRENADNKLYGH 61

Query: 118 IAKCKSAK--KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
           +   ++AK  KP   + V GC+ Q  R   ++    V +V G   I  +  ++E      
Sbjct: 62  LGHLRAAKTAKPGMQIAVGGCLAQKDRGEIVQRAPWVDVVFGTHNISSLPVLLERARHNA 121

Query: 170 EVRLLHRKKLPALD-----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
           E ++   + L AL+     LP  R + +   + I+VGC   CT+C     RG        
Sbjct: 122 EAQV---EILEALETFPSTLPARRESAYSGWVSISVGCNNTCTFCIVPSLRGKERDRRPG 178

Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGM 282
            ++  V  ++A+GV EV L  ++  +YG + G       LL A  +    DG   +R   
Sbjct: 179 EILAEVEALVAEGVLEVTLLGQNVNSYGVEFGDRYAFGKLLRACGS---VDGLERVRFTS 235

Query: 283 TNPP-FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
            +P  F  + +  +AE    P V   LH+P+QSGSD VL AM R Y  + F +++D + E
Sbjct: 236 PHPAAFTDDVIDAMAET---PNVCHQLHMPLQSGSDRVLKAMRRSYRSTRFLSILDRVRE 292

Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPS 400
            +P   I TDII GFPGET+EDF QT+ ++++ +F      Q+ PRPGTPAA M+ +VP 
Sbjct: 293 AMPDAAITTDIIVGFPGETEEDFEQTLEVVRQARFSSAFTFQYSPRPGTPAAEMEDQVPK 352

Query: 401 AVVKKRSRELTSV 413
           AVV++R   L  +
Sbjct: 353 AVVQERYDRLVEL 365


>gi|291436867|ref|ZP_06576257.1| RNA modification enzyme [Streptomyces ghanaensis ATCC 14672]
 gi|291339762|gb|EFE66718.1| RNA modification enzyme [Streptomyces ghanaensis ATCC 14672]
          Length = 505

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 123/380 (32%), Positives = 195/380 (51%), Gaps = 16/380 (4%)

Query: 52  SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSP 109
           S  + GT T  ++T+GC  N  DSE +AG L   GY  A   +  +AD+ + NTC V+  
Sbjct: 7   SQSVGGTRTYEVRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGDADVVVFNTCAVREN 66

Query: 110 SQSAMDTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEV 161
           + + +   +     K A++P   + V GC+ Q  RD  +K    V +V G   I ++  +
Sbjct: 67  ADNKLYGNLGHLAPKKARRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVL 126

Query: 162 VEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
           +E      E ++   + L A    LP  R + +   + I+VGC   CT+C     RG   
Sbjct: 127 LERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186

Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279
                 ++  +  ++A+GV E+ L  ++  AYG DIG +       + A    DG   +R
Sbjct: 187 DRRPGDILAEIEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGRIDGLERVR 245

Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
               +P    + +  IA +   P V   LH+P+QSGSDAVL AM R Y    +  +++ +
Sbjct: 246 FTSPHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDAVLKAMRRSYRQERYLGIIEKV 303

Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KV 398
              +P   I+TDII GFPGET+EDF QT+++++E +F Q    Q+  RPGTPAA M  ++
Sbjct: 304 RAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQI 363

Query: 399 PSAVVKKRSRELTSVFEAFT 418
           P  VV++R   L ++ E  +
Sbjct: 364 PKKVVQERYERLVALQEEIS 383


>gi|421076049|ref|ZP_15537051.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
           fermentans JBW45]
 gi|392525908|gb|EIW49032.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
           fermentans JBW45]
          Length = 458

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 128/392 (32%), Positives = 199/392 (50%), Gaps = 31/392 (7%)

Query: 45  LSKTGSLSPKIPGTE---------TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
           +SK    + +IP  E         T Y  T+GC  N  DSE +AGQL + GY  T++ E+
Sbjct: 1   MSKPDQYNVEIPSNEMKDSNIKYFTTY--TYGCQMNHHDSERLAGQLKSIGYEYTESLED 58

Query: 96  ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVS 148
           A   LINTC V+  ++  +   I + K+ K       + +AGC+ Q  ++   K+   + 
Sbjct: 59  ASFILINTCCVRESAEKKIYGKIGELKNLKVSNPNLIIAIAGCMAQKDKEKLFKKAPHID 118

Query: 149 -IVGVQQIDRVVEVVEE--TLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGA 205
            I+G   + ++VE+V+E    K   + +  + +  A D+P +RR K    +PI  GC   
Sbjct: 119 LIIGTHNVHQLVEIVKEFEESKDRVLAVWDQAERLAPDVPTIRRGKISAWVPIMYGCNNF 178

Query: 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV--NLPILL 263
           CTYC   + RG   S  +  ++  +  +  DG KE+ L  ++  +YG D     +   LL
Sbjct: 179 CTYCIVPYVRGRERSRPLHDIIEEIYQLGLDGFKEITLLGQNVNSYGNDTKEYGDFADLL 238

Query: 264 NAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA 322
            A+         T+ R+  MT+ P  +   K I  +L    +    H+PVQSGSD +L  
Sbjct: 239 KAV-----DQVETIERVRYMTSHPRDIND-KVIDTILNSKKICDHFHLPVQSGSDTILKM 292

Query: 323 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382
           MNR YT   +R +V  + + +P   + TDII GFPGETDE F +T+  +KE +F   +  
Sbjct: 293 MNRGYTTDYYRELVRKIRKAIPHASLTTDIIVGFPGETDELFQETLEFLKEIRFDASYTF 352

Query: 383 QFYPRPGTPAARM-KKVPSAVVKKRSRELTSV 413
            +  R GTPAA M  +VP  V K+R ++L  V
Sbjct: 353 LYSKRSGTPAATMADQVPLVVKKERLQKLMDV 384


>gi|257784577|ref|YP_003179794.1| MiaB family RNA modification protein [Atopobium parvulum DSM 20469]
 gi|257473084|gb|ACV51203.1| RNA modification enzyme, MiaB family [Atopobium parvulum DSM 20469]
          Length = 455

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 117/364 (32%), Positives = 190/364 (52%), Gaps = 22/364 (6%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T ++KTFGC  N  D+E ++G L A G     ++++ADI +  TC+V+  +   +    
Sbjct: 10  KTYHIKTFGCQMNLHDTERVSGLLEACGCNEVSDTDDADIVIFMTCSVRENADQRLYGQA 69

Query: 119 AKCKSAKKP------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
           +   SA  P      + + GC+ Q  G +  +++  V +V G   +  +  ++    +G 
Sbjct: 70  SAMVSAPTPPSGKRIVAIGGCIAQRDGEKLREKVPAVDVVFGTSALASLPALLTSAFRGE 129

Query: 170 EVRLL----HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
             R+        K  + DLP  R  ++   +PI  GC   CTYC   + RG   S T E+
Sbjct: 130 NDRVAVDISEEGKGFSTDLPSNRAQQYHAWVPIMTGCNNFCTYCIVPYVRGRERSRTFEA 189

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMT 283
           ++G    ++ADGV+E+ L  ++  +YGRD+        LL A+       G   +R   +
Sbjct: 190 VIGECERLVADGVREITLLGQNVNSYGRDLYGKPRFAELLRAV----GQTGVERIRFTSS 245

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           NP  + +  + IA +   P V   LH+ VQSGS  VL  MNR YT  ++  VV  L   +
Sbjct: 246 NPKDLTD--ETIAAMKETPAVMPHLHLAVQSGSTRVLKKMNRSYTREEYLDVVSRLRAAI 303

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402
           PG+ ++TDII GFPGET+EDF +T++L+KE  +   +   +  RPGTPAA+ +   P  V
Sbjct: 304 PGLALSTDIIVGFPGETEEDFEETLSLVKEAGYSSAYTFIYSKRPGTPAAKYEDNTPHEV 363

Query: 403 VKKR 406
           +++R
Sbjct: 364 IQER 367


>gi|414153655|ref|ZP_11409977.1| putative AdoMet-dependent methyltransferase,UPF0004 family
           [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
 gi|411454676|emb|CCO07881.1| putative AdoMet-dependent methyltransferase,UPF0004 family
           [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
          Length = 435

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 188/369 (50%), Gaps = 21/369 (5%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
           T  IY  T GC  NQ +S  MA      GY + D  + AD+++INTCTV          +
Sbjct: 3   TAAIY--TLGCKVNQYESAAMADLFRRAGYRVVDFEQPADVYIINTCTVTHLGDRKSRQM 60

Query: 118 IAKCKSAKKPLVVA--GCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
           I +        V+A  GC  Q S  ++ E+ GV+ +VG     R+V++VEE   G    +
Sbjct: 61  IRRAAKQNPAAVIAVTGCYAQTSPGEVLEIPGVNLVVGTADKSRIVQLVEE-YAGRTAPV 119

Query: 174 LHRKKLPALD----LP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
                + A D    LP    + K    L I  GC   C YC   +ARG + S   E++V 
Sbjct: 120 QAVADVMAKDCFDELPVPTEQGKSRAFLKIQEGCNSFCAYCIIPYARGPVRSRLPENVVR 179

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTNP 285
               +I  G +E+ L+    GAYG+D+    +NL  L+  + A LP  G T LR+G   P
Sbjct: 180 SATQLIQQGYQEIVLTGIHIGAYGQDLADPRINLGWLVERL-ARLP--GLTRLRLGSVEP 236

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             I + L  I  V  HP +   LH+P+QSG D +L+ M R YT   F  ++D + + + G
Sbjct: 237 HDINQQL--ITAVANHPNICRHLHIPLQSGDDQILAGMQRRYTAGQFLELIDHIKQTIAG 294

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
           + I +D+I GFPGET+  F  T+  +    F  +H+ ++ PR GTPAA M  +VP AV +
Sbjct: 295 VAITSDVIVGFPGETEAHFQNTMQTVSRAAFASIHVFKYSPRKGTPAAAMPDQVPPAVKE 354

Query: 405 KRSRELTSV 413
            RS+ L ++
Sbjct: 355 DRSKRLIAL 363


>gi|448448754|ref|ZP_21591339.1| MiaB-like tRNA modifying enzyme [Halorubrum litoreum JCM 13561]
 gi|445814228|gb|EMA64195.1| MiaB-like tRNA modifying enzyme [Halorubrum litoreum JCM 13561]
          Length = 441

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 194/371 (52%), Gaps = 24/371 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T +++T+GCS N+ +S  +   L   G+   D  E+AD+ ++NTCTV   ++  M     
Sbjct: 3   TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
           +       LVV GC+      L + E  +   V  +I    EV    L G E   +    
Sbjct: 63  ELSDMTAELVVTGCMA-----LAQGEMFADADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
            P LD         V ILPI  GC+  C+YC TK A G + S +VE  V + R ++  G 
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGA 169

Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
           KE+ ++ +DTG YG D G   LP LL+ I      DG   +R+GM NP  I    +E+A+
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAD 226

Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           V   +  +Y F+H PVQSGSD VL  M R++ +  FR VV+T  + +    ++TD I GF
Sbjct: 227 VFAENEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 412
           P E + D   +++L+ E +  ++++++F  RPGT AA MK +   V K+RS+ ++     
Sbjct: 287 PTEDEADHELSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKME 346

Query: 413 -VFEAFTPYLG 422
            V EA+   +G
Sbjct: 347 VVGEAYESMVG 357


>gi|448424292|ref|ZP_21582342.1| MiaB-like tRNA modifying enzyme [Halorubrum terrestre JCM 10247]
 gi|445682285|gb|ELZ34704.1| MiaB-like tRNA modifying enzyme [Halorubrum terrestre JCM 10247]
          Length = 441

 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 194/371 (52%), Gaps = 24/371 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T +++T+GCS N+ +S  +   L   G+   D  E+AD+ ++NTCTV   ++  M     
Sbjct: 3   TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
           +       LVV GC+      L + E  +   V  +I    EV    L G E   +    
Sbjct: 63  ELSDMTAELVVTGCMA-----LAQGEMFADADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
            P LD         V ILPI  GC+  C+YC TK A G + S +VE  V + R ++  G 
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGA 169

Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
           KE+ ++ +DTG YG D G   LP LL+ I      DG   +R+GM NP  I    +E+A+
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAD 226

Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           V   +  +Y F+H PVQSGSD VL  M R++ +  FR VV+T  + +    ++TD I GF
Sbjct: 227 VFAENEELYDFIHAPVQSGSDDVLGDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 412
           P E + D   +++L+ E +  ++++++F  RPGT AA MK +   V K+RS+ ++     
Sbjct: 287 PTEDEADHELSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKME 346

Query: 413 -VFEAFTPYLG 422
            V EA+   +G
Sbjct: 347 VVGEAYESMVG 357


>gi|401679751|ref|ZP_10811675.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. ACP1]
 gi|400218878|gb|EJO49749.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. ACP1]
          Length = 438

 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 125/385 (32%), Positives = 203/385 (52%), Gaps = 23/385 (5%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           ++ Y+ T+GC  N +DSE ++ QL   GY  TD+ E AD+ L+NTC V+  +++ +   I
Sbjct: 2   KSYYIYTYGCQMNTADSERLSHQLETVGYIPTDDVESADLILLNTCAVRETAETKVFGRI 61

Query: 119 AKCKSAK---KPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            + K  K   K L++A  GC+ Q ++    K    + IV G   I  + E++ E  + H+
Sbjct: 62  GELKRLKQKNKDLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVKRTHK 121

Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            ++   +    LP L         F   +PI  GC   CTYC   H RG   S  VE++V
Sbjct: 122 HQINVDMDNTVLPELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
             V  + A G KE+ L  ++  +YG D   G +   L++A+   +P  G   +R   ++P
Sbjct: 180 KEVTELGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHP 236

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             + + +  I  + R   + + LH+P+QSGSD +L  MNR YT+  ++ ++    E +  
Sbjct: 237 QDMTKSM--IDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKN 294

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
           + + TDII GFPGET+EDF QT+ L+K+ ++   +   +  R GTPAA M ++VP  V +
Sbjct: 295 VVVTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQVPEEVKR 354

Query: 405 KRSRELTSVFEAFTPYLG--MEGRV 427
            R ++L  +    +  L   MEG V
Sbjct: 355 VRLQQLMDIQNEISLELNKTMEGHV 379


>gi|402312108|ref|ZP_10831038.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
           ICM7]
 gi|400370769|gb|EJP23751.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
           ICM7]
          Length = 475

 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 111/357 (31%), Positives = 189/357 (52%), Gaps = 20/357 (5%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           TFGC  N  DSE ++G L+  GY   +N E+AD+ L NTCTV+  +   +   + + K +
Sbjct: 41  TFGCQMNARDSEKLSGILTGIGYMEAENEEDADLVLFNTCTVRENANDRLYGRVGQLKKS 100

Query: 125 KKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVR 172
           K+      + + GC+ Q + ++++++        + G   I ++ E++ E  T K   V 
Sbjct: 101 KEKNPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFGTHNIYKLAEILFEHLTTKKQVVN 160

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           ++   ++    LP  R   F   + I  GC   C+YC   + RG   S   E ++  +R 
Sbjct: 161 VMESAEMIVEKLPNKREFAFKSGVNITFGCNNFCSYCIVPYVRGRERSRKPEEIIDEIRG 220

Query: 233 VIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           ++ADGVKE+ L  ++  +YGR +   ++   LL+ I      DG   LR    +P  + +
Sbjct: 221 LVADGVKEIMLLGQNVNSYGRGLEEEISFATLLDRIAQ---IDGLERLRFMTPHPKDLSD 277

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
            + E+ +  +  C +  LH+P+QSGS A+L  MNR YT   +  +V  +   +P + + T
Sbjct: 278 EVIEVMKNNKKICKH--LHLPLQSGSSAILKKMNRVYTKEGYLDLVRRIKAAIPDISLTT 335

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           DII GFPGET+EDF  T++++KE ++       +  R GTPAA+M+ ++   V+K R
Sbjct: 336 DIIVGFPGETEEDFLDTLDVVKEVRYDSAFTFIYSKRSGTPAAKMEDQIDPKVIKDR 392


>gi|384566957|ref|ZP_10014061.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Saccharomonospora glauca K62]
 gi|384522811|gb|EIF00007.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Saccharomonospora glauca K62]
          Length = 498

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 128/372 (34%), Positives = 192/372 (51%), Gaps = 24/372 (6%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
           T T  ++TFGC  N  DSE +AGQL   GYAL  + EE D+ ++NTC V+  + + +   
Sbjct: 2   TRTYAIRTFGCQMNVHDSERLAGQLEDAGYALAADGEEPDVVVLNTCAVRENADNKLYGH 61

Query: 118 IAKCKSAK--KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
           +   ++AK  KP   + V GC+ Q  R   +K    V +V G   I  +  ++E      
Sbjct: 62  LGHLRAAKTAKPGMQIAVGGCLAQKDRGEIVKRAPWVDVVFGTHNIASLPVLLERARHNA 121

Query: 170 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           E  V +L   +     LP  R + +   + I+VGC   CT+C     RG         ++
Sbjct: 122 EAQVEILEALETFPSTLPARRESAYSGWVSISVGCNNTCTFCIVPSLRGKERDRRPGEIL 181

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNP 285
             V  ++A+GV EV L  ++  +YG + G       +A    L   GS   + R+  T+P
Sbjct: 182 AEVEALVAEGVLEVTLLGQNVNSYGVEFGDR-----HAFGKLLRACGSVEGLERVRFTSP 236

Query: 286 ---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
               F  + ++ +AE    P V   LH+P+QSGSD VL AM R Y  + F  +++ + E 
Sbjct: 237 HPAAFTDDVIEAMAET---PNVCHQLHMPLQSGSDRVLKAMRRSYRSTRFLGILERVREA 293

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSA 401
           +P   I TDII GFPGET+EDF QT+ +++E +F      Q+ PRPGTPAA M  +VP  
Sbjct: 294 MPDAAITTDIIVGFPGETEEDFEQTLEVVREARFSSAFTFQYSPRPGTPAAEMPDQVPKE 353

Query: 402 VVKKRSRELTSV 413
           VV++R   L  +
Sbjct: 354 VVQERYDRLVEL 365


>gi|403252391|ref|ZP_10918701.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga sp.
           EMP]
 gi|402812404|gb|EJX26883.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga sp.
           EMP]
          Length = 443

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 128/397 (32%), Positives = 210/397 (52%), Gaps = 19/397 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA- 119
            Y+KTFGC  N++DSE MAG L   G+      EEAD+ +INTC V+  S+    + +  
Sbjct: 3   FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62

Query: 120 --KCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 174
             K K  +K +V VAGCV +  R+ L E     ++G + + +V E V+  L+G +V L  
Sbjct: 63  MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVPKVTEAVKRALQGEKVALFE 122

Query: 175 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
            H  +    +LP++R +K    + I  GC   CTYC   + RG   S  +E ++  VR +
Sbjct: 123 DHLDEYTH-ELPRIRSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSRPMEDILEEVREL 181

Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
              G +EV    ++  AYG+D+  G +L  LL         +G   +    + P      
Sbjct: 182 AKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS---KIEGIERIWFLTSYPTDFSNE 238

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           L E+  + R+P V   +H+PVQSGS+ +L  MNR YT  ++  +++ +   VP + I++D
Sbjct: 239 LIEV--IARNPKVAKSVHLPVQSGSNRILKLMNRRYTKEEYLALLEKIRSKVPDVAISSD 296

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRE 409
           II GFP ET+EDF +TV+L+++ +F +++++ + PR GT A +  K  VP     +R + 
Sbjct: 297 IIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKHYKDDVPHEEKVRRMQF 356

Query: 410 LTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVR 444
           L ++ +     L     G+  R+ +   A +G+   R
Sbjct: 357 LMNLQKRINRKLNERYRGKTVRVIVEAQAKNGLFYGR 393


>gi|403069111|ref|ZP_10910443.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Oceanobacillus
           sp. Ndiop]
          Length = 518

 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 196/368 (53%), Gaps = 24/368 (6%)

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
           ++T+GC  N+ D+E MAG L+  GY  T N+E+ADI L+NTC ++  +++ +   I   K
Sbjct: 79  IRTYGCQMNEHDTEVMAGILTEMGYESTSNTEDADIILLNTCAIRENAENKVFGEIGHLK 138

Query: 123 SAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
             K  KP   + V GC+ Q      R LK+ + + ++ G   I R+ ++++E L G E  
Sbjct: 139 PLKLEKPDLIIGVCGCMSQEESVVDRILKKHQHIDLIFGTHNIHRLPQLIKEALFGKEMI 198

Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           V +  ++     +LPKVR+ K    + I  GC   CTYC     RG   S   E ++  V
Sbjct: 199 VEVWSKEGDVIENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPMTRGKERSRRPEDIIQEV 258

Query: 231 RTVIADGVKEVWLSSEDTGAYGRD---IGVNLPILLNAI-VAELPPDGSTMLRIGMTNPP 286
           R ++A G +EV L  ++  AYG+D   I   L  L+N I   ++P      +R   ++P 
Sbjct: 259 RHLVAQGYQEVTLLGQNVNAYGKDFEDIQYGLGDLMNDIHKIDIP-----RVRFTTSHPR 313

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
              + L E+  + +   +   +H+PVQSGS  +L  MNR+Y+  D+  +V  + + +P  
Sbjct: 314 DFDDRLIEV--LAQGGNLLDHIHLPVQSGSTEILKKMNRKYSREDYLELVRKIRKAIPNA 371

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MKKVPSAVVKK 405
            + TDII GFP ET+E F +T+ L++E  F   +   + PR GTPAAR    VP  V K+
Sbjct: 372 TLTTDIIVGFPNETEEQFEETMTLMEEVGFEAAYTYIYSPREGTPAARKTDDVPEDVKKQ 431

Query: 406 RSRELTSV 413
           R   L  +
Sbjct: 432 RLYRLNEL 439


>gi|303232055|ref|ZP_07318758.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513161|gb|EFL55200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 438

 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 125/385 (32%), Positives = 204/385 (52%), Gaps = 23/385 (5%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           ++ Y+ T+GC  N +DSE ++ QL   GY  TD+ E AD+ L+NTC V+  +++ +   I
Sbjct: 2   KSYYIYTYGCQMNTADSERLSHQLETVGYIPTDDVELADLILLNTCAVRETAETKVFGRI 61

Query: 119 AKCKSAK---KPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            + K  K   K L++A  GC+ Q ++    K    + IV G   I  + E++ E  + H+
Sbjct: 62  GELKRLKQKNKNLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQRTHK 121

Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            ++   +    LP L         F   +PI  GC   CTYC   H RG   S  VE++V
Sbjct: 122 HQINVDMDNTVLPELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
             V  + A G KE+ L  ++  +YG D   G +   L++A+   +P  G   +R   ++P
Sbjct: 180 KEVTELGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHP 236

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             + + +  I  + R   + + LH+P+QSGSD +L  MNR YT+  ++ ++    E +  
Sbjct: 237 QDMTKSM--IDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKN 294

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
           + + TDII GFPGET+EDF QT+ L+K+ ++   +   +  R GTPAA M ++VP  V +
Sbjct: 295 VVVTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQVPEEVKR 354

Query: 405 KRSRELTSVFEAFTPYLG--MEGRV 427
            R ++L  +    +  L   MEG+V
Sbjct: 355 VRLQQLMDIQNEISLELNKTMEGKV 379


>gi|260892471|ref|YP_003238568.1| MiaB family RNA modification protein [Ammonifex degensii KC4]
 gi|260864612|gb|ACX51718.1| RNA modification enzyme, MiaB family [Ammonifex degensii KC4]
          Length = 447

 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 120/369 (32%), Positives = 190/369 (51%), Gaps = 16/369 (4%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           Y+ T+GC  N+ DSE MAG +   GY    + EEAD+ L+NTC V+  +++ +  L+   
Sbjct: 11  YIFTYGCQMNEWDSEVMAGLVEEMGYTRAGSPEEADLILLNTCCVRESAENKVWGLLGSL 70

Query: 122 KSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEV 171
              K+      L V GC+PQ      E++        IVG      +  ++ E  +G  V
Sbjct: 71  GRLKQRRPWLLLGVTGCLPQRPGAAAEIKRRFPFVDLIVGTYNRHELPRLILEAERGQVV 130

Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
            +   ++     LP  R ++    +PI  GC   CTYC   + RG   S   E ++  V+
Sbjct: 131 AVSPEEQEIVEGLPIRRESRLRAWVPIMFGCNNFCTYCIVPYVRGKERSRRPEDILREVK 190

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILE 290
            +  +G +E++L  ++  AYG+  G+  P+    ++ +L   +G   +R   ++P    E
Sbjct: 191 ELAKEGYREIFLLGQNVNAYGK--GLQPPVTFADLLRQLNAVEGIWRIRYTTSHPRDFGE 248

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
            L  I  V   P V    H+PVQ+GSD +L  M R YT  D+  +V  + E++P    +T
Sbjct: 249 DL--IRAVAELPKVCENFHLPVQAGSDKILRRMGRGYTRQDYLNLVRRIREVLPQASFST 306

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 409
           DI+ GFPGET+EDF QT+ L++E  F Q  I  + PRPGTPAA    +VP  V  +R + 
Sbjct: 307 DIMVGFPGETEEDFEQTLLLVREVGFDQAFIFIYNPRPGTPAASFPDQVPHEVKVERIKR 366

Query: 410 LTSVFEAFT 418
           L ++ +A +
Sbjct: 367 LLALQQAIS 375


>gi|169349836|ref|ZP_02866774.1| hypothetical protein CLOSPI_00574 [Clostridium spiroforme DSM 1552]
 gi|169293404|gb|EDS75537.1| tRNA methylthiotransferase YqeV [Clostridium spiroforme DSM 1552]
          Length = 428

 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 124/397 (31%), Positives = 205/397 (51%), Gaps = 20/397 (5%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +TI   T GC  N  +S  M    +  GY   D  E AD+++INTCTV +   S    +I
Sbjct: 2   KTIAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKEIADVYVINTCTVTNTGDSKSRQMI 61

Query: 119 AKC--KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK-GHEV-- 171
            K   K+ +  + VAGC  Q    +++++EGV +V G Q    +V+ V+E LK G  V  
Sbjct: 62  RKAIRKNPQATVCVAGCYSQIAPEEIEQIEGVGVVLGTQHRKDIVKYVDEYLKTGKPVIK 121

Query: 172 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
              +++ KK   L++ + +  +    L I  GC   CTYC   +ARG + S   +S++ +
Sbjct: 122 VDNVMNLKKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRDKDSVLNQ 179

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
            +T++A+G  E+ L+   T  YG D+  N     + +V  +  DG   LRI       I 
Sbjct: 180 AKTLVANGYVEIVLTGIHTAGYGEDLD-NYS-FYDLLVDLVKIDGLKRLRISSIETSQIS 237

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           + +  I  +  +  +   LH+P+QSG DA L  MNR+YT S +   ++ +   +P +   
Sbjct: 238 DEI--INLIGSNDIIVDHLHIPLQSGCDATLKRMNRKYTTSQYLEKINKIRNYLPNIAFT 295

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
           TD+I GFPGE+DE+F +T N IKE  + ++H+  +  R  TPAA+MK +V   +  +R  
Sbjct: 296 TDVIVGFPGESDEEFEETYNFIKEVNYSELHVFPYSLRRNTPAAKMKDQVDDKIKHERVN 355

Query: 409 ELTSVFEAFTPYLGME--GRVERIWITEIAADGIHLV 443
            L  + +       ++  G++ ++   +   DG +LV
Sbjct: 356 RLLELSKKLNRDFALKQIGKILKVLFEK--RDGDYLV 390


>gi|300710670|ref|YP_003736484.1| MiaB-like tRNA modifying protein [Halalkalicoccus jeotgali B3]
 gi|448294994|ref|ZP_21485069.1| MiaB-like tRNA modifying protein [Halalkalicoccus jeotgali B3]
 gi|299124353|gb|ADJ14692.1| MiaB-like tRNA modifying enzyme [Halalkalicoccus jeotgali B3]
 gi|445585294|gb|ELY39590.1| MiaB-like tRNA modifying protein [Halalkalicoccus jeotgali B3]
          Length = 414

 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 118/362 (32%), Positives = 190/362 (52%), Gaps = 39/362 (10%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +   L   G+       EAD+ ++NTCTV   +++ M     + 
Sbjct: 5   HIETYGCTSNRGESRAIESALRDAGHYRAAGPAEADVAILNTCTVVEKTETNMLRRAKEL 64

Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
           +     L+V GC+      L + E  S V                   + R++H  ++P 
Sbjct: 65  EEETTDLIVTGCMA-----LAQSEAFSDV-------------------DARVMHWDEVPQ 100

Query: 182 LDL--------PKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
             L        P V       V ILPI  GC+  C+YC TKHA G + S T+E+ V + R
Sbjct: 101 AALNGECPTPGPGVEPVLEGVVGILPIARGCMSNCSYCITKHATGRVDSPTIEANVEKAR 160

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
            ++  G KE+ ++ +DTG YG D G  +LP LL+ I A    +G   +R+GM NP  I  
Sbjct: 161 ALVHAGAKELRITGQDTGVYGWDDGERSLPELLSRICA---IEGEFRVRLGMANPGGIHG 217

Query: 291 HLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
             +E+AEV   +  +Y F+H PVQSGSD VL  M R++ +  FR +V T    +    ++
Sbjct: 218 IHEELAEVFAENEKLYDFIHAPVQSGSDEVLEEMRRQHKVEKFREIVKTFDRELDHWTLS 277

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 409
           TD I GFP ET+ D   +++L++E +  +V++++F  RP T AA MK +   + K+RS+ 
Sbjct: 278 TDFIVGFPTETEADHELSMDLLREIRPEKVNVTRFSKRPKTDAADMKGLGGTIKKERSKA 337

Query: 410 LT 411
           ++
Sbjct: 338 MS 339


>gi|383639215|ref|ZP_09951621.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           chartreusis NRRL 12338]
          Length = 507

 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 124/384 (32%), Positives = 197/384 (51%), Gaps = 25/384 (6%)

Query: 52  SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSEEADIWLINTCTVKSPS 110
           S  + GT T  ++T+GC  N  DSE +AG L   GY    + ++EAD+ + NTC V+  +
Sbjct: 7   SQSVGGTRTYEVRTYGCQMNVHDSERLAGLLEDAGYVRAPEGADEADVVVFNTCAVRENA 66

Query: 111 QSAMDTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVV 162
            + +   +     + A +P   + V GC+ Q  RD  +K+   V +V G   I ++  ++
Sbjct: 67  DNKLYGNLGHLAPQKAARPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLL 126

Query: 163 EETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
           E      E ++   + L A    LP  R + +   + I+VGC   CT+C     RG    
Sbjct: 127 ERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKD 186

Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTML 278
                ++  +  ++A+GV E+ L  ++  AYG DIG       LL A          ++ 
Sbjct: 187 RRPGDILAEIEALVAEGVSEITLLGQNVNAYGSDIGDREAFSKLLRAC-----GKIESLE 241

Query: 279 RIGMTNP---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
           R+  T+P    F  + +  +AE    P V   LH+P+QSGSD VL AM R Y    +  +
Sbjct: 242 RVRFTSPHPRDFTDDVIAAMAET---PNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGI 298

Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395
           ++ +   +P   I+TDII GFPGETDEDF QT+++++E +F Q    Q+  RPGTPAA M
Sbjct: 299 IEKVRAAIPHAAISTDIIVGFPGETDEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEM 358

Query: 396 K-KVPSAVVKKRSRELTSVFEAFT 418
             ++P  VV++R   L ++ E  +
Sbjct: 359 DGQIPKKVVQERYERLVALQEEIS 382


>gi|452991330|emb|CCQ97390.1| Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB
           [Clostridium ultunense Esp]
          Length = 432

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/364 (31%), Positives = 190/364 (52%), Gaps = 31/364 (8%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  NQ ++E M       GY + D+ ++ADI++INTCTV +         I + K A
Sbjct: 8   TLGCKVNQYETEAMEELFEKRGYEIVDSDKDADIYVINTCTVTNLGDRKSRQFIRRAKKA 67

Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEE------------TLKG 168
               ++A  GC  Q    +++ +EGV IV G    + +V++ EE            ++KG
Sbjct: 68  NANSIIAAVGCYSQVAPEEVEAIEGVDIVIGTTDRNSIVDLCEEAKNKNKKINIVKSIKG 127

Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
           H       K+   L++  ++ +K    + I  GC   C+YC   +ARG + S  +E ++ 
Sbjct: 128 H-------KEFENLNIADLK-SKTRAYIKIQEGCNQFCSYCIIPYARGPIRSRDLEGIIN 179

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPF 287
             + +   G KEV L+     +YG+D      + L  ++ E+   DG   +R+    P F
Sbjct: 180 ESKRLAKAGFKEVILTGIHVTSYGKDFQ---DLTLVDVIEEISKIDGIERIRLSSIEPRF 236

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           + E   + A   +  C     H+ +QSGS+ VL  MNR+YT S ++ +V+ + E +P   
Sbjct: 237 VNEKFMQRAVNSKKLC--DHFHLSLQSGSNTVLKRMNRKYTTSQYKDIVNLIREYMPDAG 294

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           I TDII GFPGET E+F +T N +K+  F ++H+ ++ PR GTPA+R K ++   + ++R
Sbjct: 295 ITTDIIVGFPGETAEEFEETYNYVKDIHFSRIHVFKYSPRKGTPASRFKDQIHGNIKQER 354

Query: 407 SREL 410
           S +L
Sbjct: 355 SEKL 358


>gi|448491553|ref|ZP_21608393.1| MiaB-like tRNA modifying enzyme [Halorubrum californiensis DSM
           19288]
 gi|445692553|gb|ELZ44724.1| MiaB-like tRNA modifying enzyme [Halorubrum californiensis DSM
           19288]
          Length = 444

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/370 (33%), Positives = 192/370 (51%), Gaps = 22/370 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T +++T+GCS N+ +S  +   L   G+   D  ++AD+ ++NTCTV   ++  M     
Sbjct: 3   TYHIETYGCSSNRGESREIERALRDGGHRPADGPKDADVAILNTCTVVEKTERNMLRRAE 62

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           +       LVV GC+     ++     V      +I    EV    L G E   +     
Sbjct: 63  ELSETTAELVVTGCMALAQGEMFAEADVD----AEILHWDEVPTYVLNG-ECPTVTPDAE 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S +VE  V + R ++  G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   LP LL+ I      DG   +R+GM NP  I    +E+A+V
Sbjct: 171 EIRVTGQDTGVYGWDNGDRKLPELLDRI---CDIDGDFRVRLGMANPGGIHGIHEELADV 227

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              +  +Y F+H PVQSGSD VL  M R++ +  FR VV+T  E +    ++TD I GFP
Sbjct: 228 FAENEELYDFVHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDERLDHWTLSTDFIVGFP 287

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
            E + D  ++++L+ E    ++++++F  RPGT AA MK +   V K+RS+ ++      
Sbjct: 288 TEDEADHERSMDLLAEVSPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKMEV 347

Query: 413 VFEAFTPYLG 422
           V EA+   +G
Sbjct: 348 VGEAYESMVG 357


>gi|448384078|ref|ZP_21563076.1| MiaB-like tRNA modifying enzyme [Haloterrigena thermotolerans DSM
           11522]
 gi|445659067|gb|ELZ11879.1| MiaB-like tRNA modifying enzyme [Haloterrigena thermotolerans DSM
           11522]
          Length = 417

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/356 (33%), Positives = 190/356 (53%), Gaps = 21/356 (5%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D  E+AD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHYRVDGPEQADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
                 L + GC  + QG    +E     + G  Q+    EV E    G E         
Sbjct: 65  ADETADLFITGCMALAQG----EEFARADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S ++E  V + R +I  G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   L  LL  I A    +G   +R+GM NP  +    +++A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLERICA---IEGDFRVRVGMANPKGVHGIREDLADV 227

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              +  +Y FLH PVQSGSD VL  M R++ + ++  VV+T  + +    ++TD I GFP
Sbjct: 228 FAENDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVETFDDALEYWTLSTDFIVGFP 287

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
            ETD D  Q++ L++E +  ++++++F  RPGT AA +K +   + K+RS+E++ V
Sbjct: 288 TETDHDHAQSMALLRETRPEKINVTRFSKRPGTDAAELKGLGGTIKKERSKEMSEV 343


>gi|348026751|ref|YP_004766556.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera elsdenii DSM
           20460]
 gi|341822805|emb|CCC73729.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera elsdenii DSM
           20460]
          Length = 373

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 194/369 (52%), Gaps = 22/369 (5%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           ++GC  N SDSE+ AGQL   GY  T++ + AD+ LINTC V+  ++      I + K  
Sbjct: 13  SYGCQANMSDSEHYAGQLEELGYHHTEDLDTADVILINTCCVRETAEDKTLGKIGELKHL 72

Query: 125 KKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
           K       + V GC+ Q  +D   K    + +V G   I +++E+++E     +  +   
Sbjct: 73  KTQNPDLIIAVTGCMAQEWQDKLFKRAPHIDLVIGTHNIHKLIELIQERRSKADHYMAAD 132

Query: 177 KKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
             LPA  D+P  R  KF   +PI  GC   CTYC   + RG   S  ++++V  ++ V A
Sbjct: 133 MSLPAFHDMPVKRFQKFFAWIPIMNGCNKFCTYCIVPYVRGREVSRPIDAIVEEIKKVAA 192

Query: 236 DGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHL 292
           +G KE+ L  ++  +YG D+  G +   L+ A+      DG   +R   ++P       +
Sbjct: 193 EGYKEITLLGQNVNSYGLDLKDGTDFSKLVAAVD---DIDGIERVRYMTSHPKDMTFAMI 249

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
             IA+  +   V + +H+P+Q GS+ +L  MNR YT+  +  +VD   + +P + + TDI
Sbjct: 250 DAIADSQK---VVNHMHLPIQCGSNELLKKMNRGYTVEHYLELVDYARKRMPDLVLTTDI 306

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELT 411
           I GFPGET+  F  T+NL+K  ++   +   + PR GTPAA+M+ ++P    +++SR L 
Sbjct: 307 IVGFPGETEAMFEDTLNLLKRVQYDMAYTFIYSPRTGTPAAKMEDQIPQ---EEKSRRLQ 363

Query: 412 SVFEAFTPY 420
            + E    Y
Sbjct: 364 RLMEVQNVY 372


>gi|448327532|ref|ZP_21516856.1| MiaB-like tRNA modifying enzyme [Natrinema versiforme JCM 10478]
 gi|445617779|gb|ELY71371.1| MiaB-like tRNA modifying enzyme [Natrinema versiforme JCM 10478]
          Length = 417

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 188/355 (52%), Gaps = 19/355 (5%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D +EEAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
                 L + GC  + QG    +E     + G  Q+    EV E    G E         
Sbjct: 65  ADETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S ++   V + R +I  G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIVENVAKARALIHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
           E+ ++ +DTG YG D G      L   + E+  +G   +R+GM NP  +    +E+A+V 
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEEICEI--EGDFRVRVGMANPKGVHGIREELADVF 228

Query: 300 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
             +  +Y FLH PVQSGSD VL  M R++ + ++  VV+T    +    ++TD I GFP 
Sbjct: 229 AEYDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVETFDSALDYWTLSTDFIVGFPT 288

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           ETD D  Q++ L++E +  ++++++F  RPGT AA +K +   + K+RS+E++ V
Sbjct: 289 ETDHDHAQSMALLRETRPEKINVTRFSKRPGTDAAELKGLGGTIKKERSKEMSEV 343


>gi|284048550|ref|YP_003398889.1| MiaB family RNA modification protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283952771|gb|ADB47574.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans
           DSM 20731]
          Length = 442

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/366 (33%), Positives = 189/366 (51%), Gaps = 30/366 (8%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
            +GC  N+SDSE+ AGQLS  GY  T++  +AD+ LINTC V+  ++  +   I + K  
Sbjct: 9   NYGCQMNESDSEHYAGQLSDLGYHYTEDYHDADVILINTCCVRESAEKKILGKIGEMKQV 68

Query: 125 K-----KPLVVAGCVPQ--GSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHR 176
           K     K L V GC+ Q  G   LK+   V + +G   ++    ++++ L  H+ +   R
Sbjct: 69  KREDPSKVLCVTGCMAQKDGEDFLKKYPQVDLLIGTAHVNNFSAILQDYL--HQTQ---R 123

Query: 177 KKLPALDL---PK------VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           K     DL   P+      VR++ +   +PI  GC   CTYC   + RG   S + E++ 
Sbjct: 124 KSGMFNDLTVMPREFEGHFVRKSSYAAWVPIMYGCNNFCTYCIVPYVRGRERSRSAEAIC 183

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNP 285
             +R  +  G +E  L  ++  +YG+D G       LL  + A +P  G   +R   ++P
Sbjct: 184 EEIRKAVDQGYREFTLLGQNVNSYGKDRGDKDAFAALLRQVDA-IP--GVERVRYMTSHP 240

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             + E L       +H C +   H+PVQSGS  ++ AMNR YT   +  +VDT+ + VP 
Sbjct: 241 RDMSEELIRTVAESKHVCKH--FHIPVQSGSTRIMQAMNRGYTRESYLHLVDTIRKYVPE 298

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
             + TDII GFPGET+EDF +T++L     +   +   +  R GTPAA M+ +VP AV K
Sbjct: 299 AVLTTDIIVGFPGETEEDFQETLSLFDRVSYDAAYTFIYSKRSGTPAAAMEAQVPEAVKK 358

Query: 405 KRSREL 410
            R   L
Sbjct: 359 DRLNRL 364


>gi|302558013|ref|ZP_07310355.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces griseoflavus
           Tu4000]
 gi|302475631|gb|EFL38724.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces griseoflavus
           Tu4000]
          Length = 505

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 122/380 (32%), Positives = 193/380 (50%), Gaps = 16/380 (4%)

Query: 52  SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSP 109
           S  + GT T  ++T+GC  N  DSE ++G L   GY  A   +  +AD+ + NTC V+  
Sbjct: 7   SQSVGGTRTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGSDGDADVVVFNTCAVREN 66

Query: 110 SQSAMDTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEV 161
           + + +   +     K A +P   + V GC+ Q  RD  +K    V +V G   I ++  +
Sbjct: 67  ADNKLYGNLGHLAPKKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVL 126

Query: 162 VEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
           +E      E ++   + L A    LP  R + +   + I+VGC   CT+C     RG   
Sbjct: 127 LERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186

Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279
                 ++  +  ++A+GV E+ L  ++  AYG DIG +       + A    DG   +R
Sbjct: 187 DRRTGDILAEIEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIDGLERVR 245

Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
               +P    + +  IA +   P V   LH+P+QSGSD VL AM R Y    +  +++ +
Sbjct: 246 FTSPHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKV 303

Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KV 398
              +P   I+TDII GFPGET+EDF QT+++++E +F Q    Q+  RPGTPAA M  ++
Sbjct: 304 RAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQI 363

Query: 399 PSAVVKKRSRELTSVFEAFT 418
           P  VV++R   L  + EA +
Sbjct: 364 PKKVVQERYERLVELQEAIS 383


>gi|148269423|ref|YP_001243883.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
           petrophila RKU-1]
 gi|170288080|ref|YP_001738318.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga sp.
           RQ2]
 gi|229891014|sp|A5IJD4.1|MIAB_THEP1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891017|sp|B1L8F3.1|MIAB_THESQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|147734967|gb|ABQ46307.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga petrophila
           RKU-1]
 gi|170175583|gb|ACB08635.1| RNA modification enzyme, MiaB family [Thermotoga sp. RQ2]
          Length = 443

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/397 (31%), Positives = 212/397 (53%), Gaps = 19/397 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA- 119
            Y+KTFGC  N++DSE MAG L   G+      EEAD+ +INTC V+  S+    + +  
Sbjct: 3   FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62

Query: 120 --KCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 174
             K K  +K +V VAGCV +  R+ L E     ++G + + +V E V+  L+G +V L  
Sbjct: 63  MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVLKVTEAVKRALQGEKVALFE 122

Query: 175 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
            H  +    +LP++R +K    + I  GC   CTYC   + RG   S  +E ++  VR +
Sbjct: 123 DHLDEYTH-ELPRIRSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSRPMEDILEEVREL 181

Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
              G +EV    ++  AYG+D+  G +L  LL         +G   +    + P    + 
Sbjct: 182 AKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS---KIEGIERIWFLTSYPTDFSDE 238

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           L E+  + R+P V   +H+PVQSGS+ +L  MNR YT  ++  +++ +   VP + I++D
Sbjct: 239 LIEV--IARNPKVAKSVHLPVQSGSNRILKLMNRSYTKEEYLALLERIRSKVPDVAISSD 296

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRE 409
           II GFP ET+EDF +T++L+++ +F +++++ + PR GT A +  K  VP     +R + 
Sbjct: 297 IIVGFPTETEEDFMETIDLVEKAQFERLNLAIYSPRKGTVAWKHYKDEVPYEEKVRRMQF 356

Query: 410 LTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVR 444
           L ++ +     L    +G+  R+ +   A +G+   R
Sbjct: 357 LMNLQKRINRKLNERYKGKTVRVIVEAQAKNGLFYGR 393


>gi|448363530|ref|ZP_21552130.1| MiaB-like tRNA modifying protein [Natrialba asiatica DSM 12278]
 gi|445646343|gb|ELY99332.1| MiaB-like tRNA modifying protein [Natrialba asiatica DSM 12278]
          Length = 417

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/385 (32%), Positives = 202/385 (52%), Gaps = 21/385 (5%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D  +EAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHHQVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
                 L + GC+      L + E  +   V       + V E +   E         P 
Sbjct: 65  SEETADLFITGCMA-----LAQGEEFAQADVDGQVLHWDAVPEAVTNGECPTTTPDAEPI 119

Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 241
           LD         V ILPI  GC+  C+YC TKHA G + S ++E  V + R +I  G KE+
Sbjct: 120 LD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPSIEENVEKARALIHAGAKEL 172

Query: 242 WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-R 300
            ++ +DTG YG D G      L A + EL  +G   +R+GM NP  +    +E+A+    
Sbjct: 173 RITGQDTGVYGWDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADAFAE 230

Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
           +  +Y FLH PVQSGSD VL  M R++ + ++  VV+T  E +    ++TD I GFP ET
Sbjct: 231 YDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYVEVVETFGEALEYWTLSTDFIVGFPTET 290

Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFE 415
           D D  Q++ L++E +  ++++++F  RPGT AA MK +   + K+RS+E+++     V +
Sbjct: 291 DHDHEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKEMSAAKREIVAD 350

Query: 416 AFTPYLGMEGRVERIWITEIAADGI 440
           A+   +G E R + + + E  AD +
Sbjct: 351 AYADMVG-ERREDVLVVEEGTADSV 374


>gi|407979369|ref|ZP_11160185.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
           HYC-10]
 gi|407413976|gb|EKF35647.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
           HYC-10]
          Length = 508

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  T+++E+A++ L+NTC ++  +++ +   +  
Sbjct: 67  FYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGELGH 126

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ K+      L V GC+ Q     +R LK+   V ++ G   I R+ E++ E     E
Sbjct: 127 LKALKREKPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSECYLSKE 186

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             + +  ++     +LP+ R+ K    + I  GC   CTYC   + RG   S   + ++ 
Sbjct: 187 MVIEVWSKEGDVIENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQ 246

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 247 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 305

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS AVL  M R+Y    +  +V  + E +P   +
Sbjct: 306 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAVLKLMARKYDRERYLELVRKIKEAMPNASL 363

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA+MK  VP  V K+R 
Sbjct: 364 TTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREGTPAAKMKDNVPMRVKKERL 423

Query: 408 RELTSV 413
           + L ++
Sbjct: 424 QRLNAL 429


>gi|433592660|ref|YP_007282156.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
 gi|448335096|ref|ZP_21524248.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
 gi|433307440|gb|AGB33252.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
 gi|445618032|gb|ELY71616.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
          Length = 417

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/356 (33%), Positives = 189/356 (53%), Gaps = 21/356 (5%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D  E+AD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHYRVDGPEQADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
                 L + GC  + QG    +E     + G  Q+    EV E    G E         
Sbjct: 65  ADETADLFITGCMALAQG----EEFARADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S ++E  V + R +I  G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           E+ ++ +DTG YG D G   L  LL  I A    +G   +R+GM NP  +    +++A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLERICA---IEGDFRVRVGMANPKGVHGIREDLADV 227

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              +  +Y FLH PVQSGSD VL  M R++ + ++  VV+   E +    ++TD I GFP
Sbjct: 228 FAENDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVEAFDERLDYWTLSTDFIVGFP 287

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
            ETD D  Q++ L++E +  ++++++F  RPGT AA +K +   + K+RS+E++ V
Sbjct: 288 TETDHDHAQSMALLRETRPEKINVTRFSKRPGTDAAELKGLGGTIKKERSKEMSEV 343


>gi|311068224|ref|YP_003973147.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           atrophaeus 1942]
 gi|419823795|ref|ZP_14347329.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           atrophaeus C89]
 gi|310868741|gb|ADP32216.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           atrophaeus 1942]
 gi|388472034|gb|EIM08823.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           atrophaeus C89]
          Length = 509

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/375 (32%), Positives = 196/375 (52%), Gaps = 24/375 (6%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  T++ ++A++ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ KK      L V GC+ Q     +R LK+   V ++ G   I R+ E++ E     E
Sbjct: 128 LKTLKKENPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             + +  ++     +LPKVRR K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 MVIEVWSKEGDVIENLPKVRRGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + ++G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFD-DITYGLGDLMDELRKIDIPRIRFTTSHPRDF 306

Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
            +HL E+      +L H      +H+PVQSGS  VL  M R+Y  + +  +V  +   +P
Sbjct: 307 DDHLVEVLGKGGNLLDH------IHLPVQSGSSEVLKLMARKYDRARYMELVGKIKAAMP 360

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
              + TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA+MK  VP  V 
Sbjct: 361 NASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVK 420

Query: 404 KKRSRELTSVFEAFT 418
           K+R + L  + +  +
Sbjct: 421 KERLQRLNDLVKEIS 435


>gi|260438409|ref|ZP_05792225.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus
           DSM 2876]
 gi|292808995|gb|EFF68200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus
           DSM 2876]
          Length = 473

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/414 (31%), Positives = 214/414 (51%), Gaps = 23/414 (5%)

Query: 52  SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ 111
           + K  G+ T +++TFGC  N  DSE +AG L A G+  TDN EEAD  + NTC+V+  + 
Sbjct: 31  AEKKGGSLTYHIQTFGCQMNARDSEKLAGILEAAGFVHTDN-EEADFVIYNTCSVRENAN 89

Query: 112 SAMDTLIAKCKSAKKP-----LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRVVEV 161
           + +   + + K  KK      + + GC+ Q   ++++++     + IV G   I +  E+
Sbjct: 90  NRLYGHLGRMKVVKKNNPDMLIAICGCMMQEPDEIEKIKTKYKFIDIVFGTHNIFKFAEL 149

Query: 162 VEETL--KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
           V   L  +G  + +         DLP VR+  F   + I  GC   C+YC   + RG   
Sbjct: 150 VHTKLNSEGMIIDIWKDTNQIVEDLPDVRKYTFKSGVNIMYGCNNFCSYCIVPYVRGRER 209

Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTML 278
           S   + ++  V   + +GVKEV L  ++  +YG+ +    PI    ++ E+   +G   +
Sbjct: 210 SREPKDIIREVERFVKEGVKEVMLLGQNVNSYGKTL--ENPISFAELLKEVSKVEGLERI 267

Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
           R    +P  + + L E   V   P V   +H+P+QSGS  +L  MNR YT   +  +V  
Sbjct: 268 RFMTPHPKDLSDELIETMAVT--PKVCHHIHLPLQSGSSRILKLMNRHYTKESYLELVKK 325

Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KK 397
           + + +P   + TDII GFPGET+EDFN T+++++E +F   +   +  R GTPAA M ++
Sbjct: 326 IRKRMPDAALTTDIIVGFPGETEEDFNDTMDVVREAEFDSAYTFIYSKREGTPAASMTEQ 385

Query: 398 VPSAVVKKR-SRELTSVFEAFTPYLGME-GRVERIWITEIAA--DGIHLVRLEQ 447
           +P  V K+R  R L  V E+     G++ G+  ++ + E+    +G+   RLE 
Sbjct: 386 IPEEVTKERFDRLLKQVGESSKKRCGLDVGKTLKVLVEEVNQNHEGLLTGRLEN 439


>gi|443319923|ref|ZP_21049066.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Gloeocapsa sp. PCC 73106]
 gi|442790366|gb|ELR99956.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Gloeocapsa sp. PCC 73106]
          Length = 451

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/409 (31%), Positives = 211/409 (51%), Gaps = 31/409 (7%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
           T+  ++ TFGC  N++DSE MAG L   G+  +++  +A++ L NTCT++  ++  + + 
Sbjct: 9   TQRYHITTFGCQMNKADSERMAGILEEMGFEWSEDPNQANLILYNTCTIRDNAEQKVYSY 68

Query: 118 IAKCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
           + +    K+      L+VAGCV Q  G + L+ +  + +V G Q  +++  ++E+   G+
Sbjct: 69  LGRQAKRKQTEPNLTLIVAGCVAQQEGEQLLRRVPELDLVMGPQHANQLENLLEQVFAGN 128

Query: 170 EVRLLHRKKLPAL-DLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESL 226
           +V  +  + +  L D+ K RR   V    +NV  GC   CTYC   + RG   S T E++
Sbjct: 129 QV--VATEAIEILEDITKPRRESQVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAI 185

Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRI 280
              + T+   G KE+ L  ++  AYGRD+      G +L    + +       G   +R 
Sbjct: 186 RKEMETLGQQGYKEITLLGQNIDAYGRDLPGTTSTGRHLHTFTDLLHYVHDVQGIERIRF 245

Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
             ++P +  E L    + L  P V    H+P QSG + +L AM R YT   +R +++ + 
Sbjct: 246 ATSHPRYFTERLIRACQEL--PKVCKHFHIPFQSGDNQILKAMARGYTREKYRGIIEKIR 303

Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 400
           E +P   I+ D+I GFPGET+  F +T+ L++E  F  V+ + + PRPGTPAA + +  S
Sbjct: 304 EYMPDAAISADVIVGFPGETEAQFEKTLELVEEISFDLVNTAAYSPRPGTPAALLSEQLS 363

Query: 401 AVVK----KRSRELTSV--FEAFTPYLGMEGRVERIWITEIAADGIHLV 443
             VK    +R   L S+   E    YL   GR+E + + E  +   H V
Sbjct: 364 ETVKSDRLQRLNHLVSIKATERRDRYL---GRIEEVLVEEKNSKNPHQV 409


>gi|331001788|ref|ZP_08325310.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae oral
           taxon 107 str. F0167]
 gi|330412762|gb|EGG92145.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae oral
           taxon 107 str. F0167]
          Length = 475

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 191/364 (52%), Gaps = 19/364 (5%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           TFGC  N  DSE ++G LS  GY   +N E+AD+ L NTCTV+  +   +   + + K +
Sbjct: 41  TFGCQMNARDSEKLSGILSGIGYTEAENEEDADLVLFNTCTVRENANDRLYGRVGQLKKS 100

Query: 125 KKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVR 172
           K+      + + GC+ Q + ++++++        + G   I ++ E++ +  T K   + 
Sbjct: 101 KEKNHDMIVGICGCMMQEAEEVEKIKKSYRHVDLVFGTHNIYKLAEILFDHLTTKKQIIN 160

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           ++    +    LP  R+  F   + I  GC   C+YC   + RG   S   E ++  ++T
Sbjct: 161 VMESADMIVEKLPNKRQYAFKSGVNITFGCNNFCSYCIVPYVRGRERSRKPEEIIDEIKT 220

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEH 291
           ++ADGVKE+ L  ++  +YGR  G+   I    ++  +   +G   LR    +P  + + 
Sbjct: 221 LVADGVKEIMLLGQNVNSYGR--GLEEEISFAGLLERIAEIEGLERLRFMTPHPKDLSDE 278

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           + E+ +  +  C +  LH+P+QSGS A+L  MNR YT  D+  +V  +   +P + + TD
Sbjct: 279 VIEVMKNNKKICKH--LHLPLQSGSSAILKKMNRVYTKEDYLNLVKRIKTAIPDISLTTD 336

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV--PSAVVKKRSRE 409
           II GFPGET+ DF  T+ ++KE ++       +  R GTPAA+M++   P A+  +  R 
Sbjct: 337 IIVGFPGETEGDFLDTLEVVKEVRYDSAFTFIYSKRSGTPAAKMEEQVDPKAIKDRFDRL 396

Query: 410 LTSV 413
           L +V
Sbjct: 397 LKTV 400


>gi|383620560|ref|ZP_09946966.1| MiaB-like tRNA modifying enzyme [Halobiforma lacisalsi AJ5]
 gi|448697917|ref|ZP_21698795.1| MiaB-like tRNA modifying enzyme [Halobiforma lacisalsi AJ5]
 gi|445781283|gb|EMA32144.1| MiaB-like tRNA modifying enzyme [Halobiforma lacisalsi AJ5]
          Length = 417

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 202/397 (50%), Gaps = 45/397 (11%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D  EEAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHYRVDGPEEADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
                 L + GC+   QG                      E  E  + G   R+LH  ++
Sbjct: 65  SDETADLYITGCMALAQGE---------------------EFAEADVDG---RVLHWDEV 100

Query: 180 PA--------LDLPKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           P            P V    +  V ILPI  GC+  C+YC TK A G + S ++E  V +
Sbjct: 101 PEAVTNGECPTTTPDVEPILDGVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEK 160

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
            R ++  G KE+ ++ +DTG YG D G      L   + E+  DG   +R+GM NP  + 
Sbjct: 161 ARALVHAGAKEIRITGQDTGVYGWDEGERKLHRLLERICEI--DGDFRVRVGMANPKGVH 218

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
              +E+A V   +  +Y FLH PVQSGS+ VL  M R++ + ++  VV+T  + +    +
Sbjct: 219 GIREELAAVFADNEELYDFLHAPVQSGSNDVLGDMRRQHQVGEYLEVVETFDDRLDYWTL 278

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
           +TD I GFP ET++D  Q++ L++E +  ++++++F  RPGT AA MK +   V K+RS+
Sbjct: 279 STDFIVGFPTETEDDHRQSLELLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSK 338

Query: 409 ELTS-----VFEAFTPYLGMEGRVERIWITEIAADGI 440
           E+++     V E +   +G   R + + + E  AD +
Sbjct: 339 EMSALKREIVSEVYESMVGQR-REDCLVVEEGTADSV 374


>gi|313893403|ref|ZP_07826975.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442044|gb|EFR60464.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 438

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/385 (31%), Positives = 201/385 (52%), Gaps = 23/385 (5%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           ++ Y+ T+GC  N +DSE ++ QL + GY  T++ E AD+ L+NTC V+  +++ +   I
Sbjct: 2   KSYYIYTYGCQMNTADSERLSHQLESVGYTPTEDVETADLILLNTCAVRENAETKVYGRI 61

Query: 119 AKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            +    K+      L V GC+ Q ++    K    + IV G   I  + E++EE  +GH 
Sbjct: 62  GELMRLKRKNKNLILAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQRGHT 121

Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            ++   +    LP L+        F   +PI  GC   CTYC   H RG   S  VE++V
Sbjct: 122 HQISVDMDNTVLPELEAKP--NGTFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
             V  + A G KE+ L  ++  +YG D   G +   L++A+   +P  G   +R   ++P
Sbjct: 180 KEVTDLGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLIDALDG-IP--GIERIRYMTSHP 236

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             + + +  I  + R   + + LH+P+QSGSD +L  MNR YT+  ++ ++    E +  
Sbjct: 237 QDMTKSM--IDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKN 294

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
           + + TDII GFPGET+EDF  T+ L+K+ ++   +   +  R GTPAA M  ++P  V +
Sbjct: 295 VVVTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQIPEEVKR 354

Query: 405 KRSRELTSVFEAFTPYLG--MEGRV 427
            R + L  V    +  L   MEG+V
Sbjct: 355 VRLQTLMDVQNEISYELNKPMEGQV 379


>gi|313888926|ref|ZP_07822586.1| tRNA methylthiotransferase YqeV [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845099|gb|EFR32500.1| tRNA methylthiotransferase YqeV [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 432

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/399 (31%), Positives = 199/399 (49%), Gaps = 26/399 (6%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T  + T GC  NQ +SE M+    + GY   +N + +D++++NTCTV + S       I
Sbjct: 3   KTFSILTLGCKVNQYESEAMSELFESRGYRQVENDDFSDVYIVNTCTVTNLSDRKSRQFI 62

Query: 119 AKCKSAKKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL 174
            K K      VVA  GC  Q S  ++K +EGV +V G    +R+V+++EE+ K +E    
Sbjct: 63  RKSKKNNPNSVVAVVGCYSQVSPEEVKSIEGVDVVVGTTDRNRIVDLIEESKKNNE---- 118

Query: 175 HRKKLPALDLPKVRR----------NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
             K     DL  VR           N+    + +  GC   CTYC    ARG + S T+E
Sbjct: 119 --KINIVKDLKNVREFANTTNFDSNNRTRAYMKVQDGCNRFCTYCIIPFARGPIRSRTIE 176

Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
             V   RT+   G KE+ L+    G++G D+G    I L   +AE+  DG   +R+    
Sbjct: 177 DSVREARTLADRGFKEIVLTGIHIGSFGMDLGDMRLIDLIEAIAEV--DGIERIRLSSVE 234

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           P  I +   E A      C +   H+ +QSGS+ +L AMNR YT  D+    + +   +P
Sbjct: 235 PIIITDDFMERAVKTGKLCDH--FHLSLQSGSNNILKAMNRRYTREDYIEKANIIRNYMP 292

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
              +  DII GFPGE+ EDF  ++ ++KE  F ++H+ ++  R  T AA MK ++   V 
Sbjct: 293 HAGLTADIIVGFPGESQEDFEDSMKIVKEVGFSRIHVFKYSKRKNTKAAVMKNQIDGNVK 352

Query: 404 KKRSRELTSVFEAFTPYLGMEG-RVERIWITEIAADGIH 441
           K+RS +L ++ E +      E  +  +  + E   DG++
Sbjct: 353 KERSEKLIALGEEYQEIFERENMKTTQSVLFEEEHDGVY 391


>gi|86607496|ref|YP_476259.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           sp. JA-3-3Ab]
 gi|123504633|sp|Q2JQX6.1|MIAB_SYNJA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|86556038|gb|ABD00996.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp.
           JA-3-3Ab]
          Length = 453

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 185/346 (53%), Gaps = 19/346 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T Y  TFGC  N++DSE MAG L + GY   ++  +AD+ L NTCT++  ++  + + + 
Sbjct: 5   TYYTITFGCQMNRADSERMAGILESLGYVPAEDELQADLVLFNTCTIRDNAEQKVYSYLG 64

Query: 120 -----KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
                K K+    L+VAGCV Q  G R L+ +  + +V G Q ++R+ +++ +   G++V
Sbjct: 65  IQAQRKRKNPAIKLIVAGCVAQQEGERLLRRVPELDLVMGPQYVNRLGDLLAQVEAGNQV 124

Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
                 ++P  D+ K RR+  V    INV  GC   CTYC     RG   S   +++   
Sbjct: 125 VATEPVEIPE-DITKPRRDSRVTAW-INVIYGCNERCTYCIVPLVRGREQSRQPQAIRAE 182

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
           +  V   G +EV L  ++  AYGRD+    NL  LL  + +    +G   +R   ++P +
Sbjct: 183 IEDVARAGYREVTLLGQNIDAYGRDLDPKTNLASLLRFVHS---VEGIERIRFATSHPRY 239

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             E L  IA     P V    H+P Q+GSDAVL  M R YT   +R ++  + + +P   
Sbjct: 240 FTEEL--IATCAELPKVCEHFHIPFQAGSDAVLKRMRRGYTQERYRQLIQLIRQYMPEAT 297

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393
           I+ D I GFPGET+  F +T+ L+++  F  ++ + + PRPGTPAA
Sbjct: 298 ISADAIVGFPGETEAQFQETLQLVQDIGFDFLNTAAYSPRPGTPAA 343


>gi|448506321|ref|ZP_21614431.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 9100]
 gi|448525058|ref|ZP_21619476.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 10118]
 gi|445699971|gb|ELZ51989.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 9100]
 gi|445700030|gb|ELZ52045.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 10118]
          Length = 441

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 194/371 (52%), Gaps = 24/371 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T +++T+GCS N+ +S  +   L   G+   D  ++AD+ ++NTCTV   ++  M     
Sbjct: 3   TYHIETYGCSSNRGESREIERALRDGGHRPADGPKDADVAILNTCTVVEKTERNMLRRAE 62

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
           +       LVV GC+      L + E  +   V  +I    EV    L G E   +    
Sbjct: 63  ELSDMTAELVVTGCMA-----LAQGEMFADADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
            P LD         V ILPI  GC+  C+YC TK A G + S +VE  V + R ++  G 
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGA 169

Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
           KE+ ++ +DTG YG D G   LP LL+ I      DG   +R+GM NP  I    +E+A+
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAD 226

Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           V   +  +Y F+H PVQSGSD VL  M R++ +  FR VV+T  + +    ++TD I GF
Sbjct: 227 VFAENEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 412
           P E + D   +++L+ E +  ++++++F  RPGT AA MK +   V K+RS+ ++     
Sbjct: 287 PTEDEADHELSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKME 346

Query: 413 -VFEAFTPYLG 422
            V EA+   +G
Sbjct: 347 VVGEAYESMVG 357


>gi|302554591|ref|ZP_07306933.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472209|gb|EFL35302.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
           viridochromogenes DSM 40736]
          Length = 508

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/380 (32%), Positives = 194/380 (51%), Gaps = 16/380 (4%)

Query: 52  SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSP 109
           S  + GT T  ++T+GC  N  DSE +AG L   GY  A   +  EAD+ + NTC V+  
Sbjct: 7   SQSVGGTRTYEVRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGEADVVVFNTCAVREN 66

Query: 110 SQSAMDTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEV 161
           + + +   +     K A +P   + V GC+ Q  RD  +K+   V +V G   I ++  +
Sbjct: 67  ADNKLYGNLGHLAPKKAGRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVL 126

Query: 162 VEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
           +E      E ++   + L A    LP  R + +   + I+VGC   CT+C     RG   
Sbjct: 127 LERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186

Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279
                 ++  +  ++ADGV E+ L  ++  AYG DIG +       + A    +G   +R
Sbjct: 187 DRRPGDILAEIEALVADGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERVR 245

Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
               +P    + +  IA +   P V   LH+P+QSGSD VL AM R Y    +  +++ +
Sbjct: 246 FTSPHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKV 303

Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KV 398
              +P   I+TDII GFPGET+EDF QT+++++E +F Q    Q+  RPGTPAA M  ++
Sbjct: 304 RAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQI 363

Query: 399 PSAVVKKRSRELTSVFEAFT 418
           P  VV++R   L ++ E  +
Sbjct: 364 PKKVVQERYERLVALQEEIS 383


>gi|387926953|ref|ZP_10129632.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           methanolicus PB1]
 gi|387589097|gb|EIJ81417.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           methanolicus PB1]
          Length = 514

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 194/371 (52%), Gaps = 16/371 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG     GY  TD  E+A++ L+NTC ++  +++ +   I  
Sbjct: 71  FYIRTYGCQMNEHDTEVMAGIFMGLGYEPTDKPEDANVILLNTCAIRENAENKVFGEIGH 130

Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ K  KP   L V GC+ Q     ++ LK+ + V ++ G   I R+  ++ E     E
Sbjct: 131 LKALKMEKPDLLLGVCGCMSQEELVVNKILKQYQYVDMIFGTHNIHRLPNILHEAYMSKE 190

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 191 MVVEVWSKEGDIIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A G KE+ L  ++  AYG+D   ++   L  ++ E+       +R   ++P   
Sbjct: 251 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYRLGDLMEEISKIDIPRIRFTTSHPRDF 309

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  VL  M R+YT  ++  +V  +   +P + +
Sbjct: 310 DDHLIEV--LAKGGNLMPHIHLPVQSGSTDVLKIMARKYTREEYLELVRKIKAAIPDVAL 367

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII G+P ET+E F +T++L +E  F   +   + PR GTPAA+M+  VP  V K+R 
Sbjct: 368 TTDIIVGYPNETEEQFEETLSLYREVGFESAYTFIYSPREGTPAAKMQDNVPMEVKKERL 427

Query: 408 RELTSVFEAFT 418
           + L ++    +
Sbjct: 428 QRLNTLVNELS 438


>gi|255657963|ref|ZP_05403372.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mitsuokella multacida DSM
           20544]
 gi|260850164|gb|EEX70171.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mitsuokella multacida DSM
           20544]
          Length = 444

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/371 (32%), Positives = 190/371 (51%), Gaps = 31/371 (8%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           Y+  +GC  NQSD+E M GQL   GY  T++ EEAD+ LINTC V+  ++  +   I + 
Sbjct: 13  YLLVYGCQMNQSDAERMMGQLRTIGYERTESMEEADLILINTCCVRETAEDRVYGKIGEI 72

Query: 122 KSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL--KGHEV 171
           K  K+        + GC+ Q   D  +K    +  V G  ++  +  VV+E     GH V
Sbjct: 73  KRLKRENPELIFGITGCMAQKEGDALIKRAPHIDFVLGTNKVHELTHVVQEIQAEHGHVV 132

Query: 172 RL-LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
            + L   +LP  D+P  R       +PI  GC   CTYC   + RG   S   E +V  V
Sbjct: 133 DVQLGETELPD-DVPVARAGSLSAWVPIMYGCNNFCTYCIVPYVRGRERSRLPEDIVHEV 191

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
              + +G +EV L  ++  +YG+D  +     L  +V ++P         G+    F+  
Sbjct: 192 EEAVKNGYEEVTLLGQNVNSYGKDHKLADFADLLKMVDKVP---------GIRRVRFMTS 242

Query: 291 HLKEIAEVL-------RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           H K++++ +        H C    +H+PVQ GS+ +L AMNR YT+  +R +V  +   +
Sbjct: 243 HPKDLSDKVIAAIRDGEHLC--EHIHLPVQYGSNRILKAMNRVYTVESYRDLVRRIRAAI 300

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402
           P + + TD+I GFPGETDEDF Q ++ ++E ++   +   +  R GTPAA M+ +V  +V
Sbjct: 301 PDVSLTTDLIVGFPGETDEDFQQMLDFLREIRYDSAYTFIYSKRSGTPAATMENQVDESV 360

Query: 403 VKKRSRELTSV 413
            K+R   L +V
Sbjct: 361 KKERLNALMAV 371


>gi|448479235|ref|ZP_21604087.1| MiaB-like tRNA modifying enzyme [Halorubrum arcis JCM 13916]
 gi|445822513|gb|EMA72277.1| MiaB-like tRNA modifying enzyme [Halorubrum arcis JCM 13916]
          Length = 441

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 194/371 (52%), Gaps = 24/371 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T +++T+GCS N+ +S  +   L   G+   D  ++AD+ ++NTCTV   ++  M     
Sbjct: 3   TYHIETYGCSSNRGESREIERALRDGGHRPADGPKDADVAILNTCTVVEKTERNMLRRAE 62

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
           +       LVV GC+      L + E  +   V  +I    EV    L G E   +    
Sbjct: 63  ELSDMTAELVVTGCMA-----LAQGEMFADADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
            P LD         V ILPI  GC+  C+YC TK A G + S +VE  V + R ++  G 
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGA 169

Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
           KE+ ++ +DTG YG D G   LP LL+ I      DG   +R+GM NP  I    +E+A+
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAD 226

Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           V   +  +Y F+H PVQSGSD VL  M R++ +  FR VV+T  + +    ++TD I GF
Sbjct: 227 VFAENEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 412
           P E + D   +++L+ E +  ++++++F  RPGT AA MK +   V K+RS+ ++     
Sbjct: 287 PTEDEADHELSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKME 346

Query: 413 -VFEAFTPYLG 422
            V EA+   +G
Sbjct: 347 VVGEAYESMVG 357


>gi|163781959|ref|ZP_02176959.1| oxaloacetate decarboxylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883179|gb|EDP76683.1| oxaloacetate decarboxylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 441

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/400 (31%), Positives = 214/400 (53%), Gaps = 22/400 (5%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++KTFGC  N +DSE + G L   GY   ++ EEAD+ L+NTCT++      + + I + 
Sbjct: 6   FIKTFGCQMNFNDSERIRGILRTLGYEPAESWEEADLILLNTCTIREKPDQKVLSHIGEY 65

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHE-VR 172
           K  K+      + V+GC+ Q  G   +++   V I+     + ++ E++ +   G++ V 
Sbjct: 66  KKIKERNPNALIAVSGCLAQRAGWELVQKAPAVDIMFSSFNMHQLPELINQAQAGYKAVA 125

Query: 173 LLH---RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           +L      +    D P  R N +   + I  GC   CTYC     RG   S ++ S++  
Sbjct: 126 ILEAPPEDEDAVWDFPTERDNPYCAYVTIIKGCDKNCTYCVVPKTRGKERSRSMYSILEE 185

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFI 288
           V+ ++ +GV+E+ L  ++  A+G+D     PI  + ++ E+   DG   +R    +P  +
Sbjct: 186 VKKLVDEGVREIHLLGQNVTAWGKDF--ERPIPFSELLYEVSKVDGVERIRFTTGHPKDL 243

Query: 289 LEHLKE-IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
            +   E +A++   P V + LH+P Q+GSD +L  M+R+YT   +   ++ L E V  + 
Sbjct: 244 TDDTVEAMADI---PQVCNALHLPFQAGSDRILELMDRKYTKEFYLDRINRLKEAVEDIA 300

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           ++TDII GFP ETDEDF  T+++++E +F QV   ++ PRPGTPAA M+ +VP  V  +R
Sbjct: 301 LSTDIIVGFPTETDEDFEHTLDVVREVEFEQVFSFKYSPRPGTPAAEMEGQVPDEVKTER 360

Query: 407 SRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVR 444
              L  + +A    L    EG V+++ + E   +G  + R
Sbjct: 361 MSRLLELQKAIMGKLSKRYEGTVQKVLVEEERGEGTLIGR 400


>gi|16329745|ref|NP_440473.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
           sp. PCC 6803]
 gi|383321487|ref|YP_005382340.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
           sp. PCC 6803 substr. GT-I]
 gi|383324657|ref|YP_005385510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
           sp. PCC 6803 substr. PCC-P]
 gi|383490541|ref|YP_005408217.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
           sp. PCC 6803 substr. PCC-N]
 gi|384435807|ref|YP_005650531.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
           sp. PCC 6803]
 gi|451813905|ref|YP_007450357.1| hypothetical protein MYO_15840 [Synechocystis sp. PCC 6803]
 gi|2501538|sp|P73127.1|MIAB_SYNY3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|1652230|dbj|BAA17153.1| sll0996 [Synechocystis sp. PCC 6803]
 gi|339272839|dbj|BAK49326.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
           sp. PCC 6803]
 gi|359270806|dbj|BAL28325.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
           sp. PCC 6803 substr. GT-I]
 gi|359273977|dbj|BAL31495.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
           sp. PCC 6803 substr. PCC-N]
 gi|359277147|dbj|BAL34664.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
           sp. PCC 6803 substr. PCC-P]
 gi|451779874|gb|AGF50843.1| hypothetical protein MYO_15840 [Synechocystis sp. PCC 6803]
          Length = 451

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/393 (32%), Positives = 201/393 (51%), Gaps = 29/393 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G   TD+  +AD+ L NTC+++  ++  + + + + 
Sbjct: 9   HIITFGCQMNKADSERMAGILENLGMTYTDDPNQADLVLYNTCSIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K+      LVVAGCV Q  G + L+ +  + +V G Q  +R+ +++E+   G +V  
Sbjct: 69  AKRKQVEPELTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLDQLLEQVWAGSQV-- 126

Query: 174 LHRKKLPAL-DLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
           +  + L  + D+ K RR   V   + I  GC   C+YC   + RG   S T E++ G + 
Sbjct: 127 VATESLHIMEDITKPRRESTVSAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYGEME 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
            +   G KEV L  ++  AYGRD+      G +L  L + +      +G   LR   ++P
Sbjct: 187 VLAQQGFKEVTLLGQNIDAYGRDLPGTTPSGRHLHTLTDLLYHVHDIEGIDRLRFATSHP 246

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
            +  E L +  + L  P V    H+P QSG + +L AM R YT   +  +++ +   +P 
Sbjct: 247 RYFTERLIQACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTREKYLQIIEKIRRYMPD 304

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
             I+ D+I GFPGET+  F  T+NLI+E  F  ++ + + PRPGTPAA      S  VK 
Sbjct: 305 AAISADVIVGFPGETEAQFENTLNLIEEVGFDLLNTAAYSPRPGTPAAFWDNQLSEEVKG 364

Query: 405 ---KRSREL--TSVFEAFTPYLGMEGRVERIWI 432
              +R   L  T   E    YL   GRVE + +
Sbjct: 365 DRLQRLNHLVSTQAMERSQRYL---GRVEEVLV 394


>gi|86609143|ref|YP_477905.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           sp. JA-2-3B'a(2-13)]
 gi|123502140|sp|Q2JKY0.1|MIAB_SYNJB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|86557685|gb|ABD02642.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 444

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 185/346 (53%), Gaps = 19/346 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T Y  TFGC  N++D+E MAG L + GY  T++  +AD+ L NTCT++  ++  + + + 
Sbjct: 5   TYYTITFGCQMNRADTERMAGILESLGYVATEDELQADLVLYNTCTIRDNAEQKVYSYLG 64

Query: 120 -----KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
                K K+    L+VAGCV Q  G + L+ +  + +V G Q ++R+ +++ +   G++V
Sbjct: 65  IQAQRKRKNPAIKLIVAGCVAQQEGEKLLRRVPELDLVMGPQYVNRLGDLLAQVEAGNQV 124

Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
                 ++P  D+ K RR+  V    INV  GC   CTYC     RG   S   +++   
Sbjct: 125 VATDPVEIPE-DITKPRRDSQVTAW-INVIYGCNERCTYCIVPRVRGQEQSRQPQAIRAE 182

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
           +  V   G +EV L  ++  AYGRD+    NL  LL  + +    +G   +R   ++P +
Sbjct: 183 IEDVARAGYREVTLLGQNIDAYGRDLDPKTNLASLLRFVHS---VEGIERIRFATSHPRY 239

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             E L  I      P V    H+P Q+GS+ VL  M R YT   +R ++  + + +P   
Sbjct: 240 FTEEL--ITTCAELPKVCEHFHIPFQAGSNEVLKRMRRGYTHERYRQIIQLIRQYMPEAA 297

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393
           I+ D I GFPGET+  F +T+ L+++  F QV+ + + PRPGTPAA
Sbjct: 298 ISADAIVGFPGETEAQFQETLQLVQDIGFDQVNTAAYSPRPGTPAA 343


>gi|89100706|ref|ZP_01173562.1| YmcB [Bacillus sp. NRRL B-14911]
 gi|89084581|gb|EAR63726.1| YmcB [Bacillus sp. NRRL B-14911]
          Length = 514

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/380 (31%), Positives = 193/380 (50%), Gaps = 21/380 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++TFGC  N+ D+E MAG   + GY  TD  E+A++ L+NTC ++  +++ +   +  
Sbjct: 71  FYIRTFGCQMNEHDTEVMAGIFLSLGYEPTDTVEDANVILLNTCAIRENAENKVFGELGH 130

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K  KK      L V GC+ Q     ++ LK  + V ++ G   I R+  +++E     E
Sbjct: 131 LKHLKKERPDLLLGVCGCMSQEESVVNKILKTYDQVDMIFGTHNIHRLPNILQEAYMSKE 190

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVR+      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 191 MVVEVWSKEGDVIENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 250

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A G +E+ L  ++  AYG+D   +L   L  ++ E+       +R   ++P   
Sbjct: 251 EVRQLAAQGYQEITLLGQNVNAYGKDF-TDLQYGLGDLMDEIRKIDIPRIRFTTSHPRDF 309

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  VL  M R+YT   +  +V  +   +P    
Sbjct: 310 DDHLIEV--LAKGGNLLEHIHLPVQSGSTDVLKIMARKYTREQYLELVRKIRAAIPNATF 367

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII G+P ETDE F +T++L KE  +   +   + PR GTPAA+MK  VP  V K+R 
Sbjct: 368 TTDIIVGYPNETDEQFEETLSLYKEVGYESAYTFIYSPREGTPAAKMKDNVPMEVKKERL 427

Query: 408 RELTSVF-----EAFTPYLG 422
           + L ++      EA   Y G
Sbjct: 428 QRLNALVNEMSAEAMKKYHG 447


>gi|402817481|ref|ZP_10867069.1| ribosomal protein S12 methylthiotransferase RimO [Paenibacillus
           alvei DSM 29]
 gi|402505003|gb|EJW15530.1| ribosomal protein S12 methylthiotransferase RimO [Paenibacillus
           alvei DSM 29]
          Length = 442

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/375 (32%), Positives = 202/375 (53%), Gaps = 30/375 (8%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDT 116
           TE I + T GC  N  DSE M+G +   GY L +N E+A + ++NTC  + +  + +++T
Sbjct: 2   TEKIKIVTLGCDKNLVDSEIMSGLIYERGYELVENEEDATVIIVNTCGFIDAAKEESVNT 61

Query: 117 LIA----KCKSAKKPLVVAGCVPQGSRD-----LKELEGVSIVGVQQIDRVVEVVEETLK 167
           ++     K  +  K L+V+GC+ Q  ++     + E++G  IVG    D++ ++V+E L+
Sbjct: 62  ILRLADLKETAELKALIVSGCLTQRYKEQLLDEMPEIDG--IVGTGDFDKINDIVDEALQ 119

Query: 168 GHE-VRLLHRKKLPALD----LP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
           G + +R+ +    P  D    LP KV   ++   + I  GC   CT+C     RG   S 
Sbjct: 120 GSKPIRVGN----PVFDYDRILPRKVATPRYTAYVKIAEGCDNNCTFCSIPIMRGKFRSR 175

Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLR 279
           T+ES++  V  +   GVKE+ L ++D+  YG D+  G  LP L+N  V+E+P  G   +R
Sbjct: 176 TMESILAEVAQLAEQGVKEISLIAQDSTNYGVDLYDGFKLPELMNK-VSEIP--GVEWVR 232

Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
           +    P F  E L +   +  +P +  ++ +P+Q   D++L  M R     D R +V+ +
Sbjct: 233 LHYAYPGFFTEELMDT--IASNPKICKYIDMPLQHSEDSILKRMRRPGRQRDSRELVNKI 290

Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKV 398
            E +PG+ + T II GFPGETDEDF++  + I+E KF ++ +  +     TPA R+   V
Sbjct: 291 RERIPGVALRTSIIVGFPGETDEDFDRLCDFIREMKFDRLGVFTYSSEEDTPATRLPDHV 350

Query: 399 PSAVVKKRSRELTSV 413
           P  V + R+  L  +
Sbjct: 351 PDEVKEWRANTLMEI 365


>gi|414160614|ref|ZP_11416880.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Staphylococcus simulans ACS-120-V-Sch1]
 gi|410878134|gb|EKS26023.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Staphylococcus simulans ACS-120-V-Sch1]
          Length = 513

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 192/366 (52%), Gaps = 16/366 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T ++KT+GC  N  D+E MAG   A GY L D+  +AD+ L+NTC ++  +++ + + I 
Sbjct: 68  TFFIKTYGCQMNAHDTEVMAGIFEALGYTLADDMLKADVILLNTCAIRENAENKVFSEIG 127

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  K+      + V GC+ Q     ++ LK  + V ++ G   I ++ E++EE    K
Sbjct: 128 NLKHLKRDRPDCLIGVCGCMSQEESVVNKILKSFQNVDMIFGTHNIHKLPEILEEAYLSK 187

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              + +  ++     +LPKVR + F   + I  GC   CTYC     RG   S   E ++
Sbjct: 188 AMVIDVWSKEGDVIENLPKVRDDYFKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 247

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +   G KE+ L  ++  +YG+D+  ++   L  +  ++       +R   ++P  
Sbjct: 248 EEVRDLARQGYKEITLLGQNVNSYGKDLQ-DIEYGLGDLFEDIAKIDIPRVRFTTSHPWD 306

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             +H+ E+  + +   +   +H+PVQSG+DAVL  M R+YT   +  +V+ +   +P + 
Sbjct: 307 FTDHMIEV--IAKGGNIVPHIHLPVQSGNDAVLKIMGRKYTRESYLDLVNRIKAAIPDVA 364

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T++L  E +F   +   +  R GTPAARMK  V + V K+R
Sbjct: 365 LTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAARMKDNVATEVKKER 424

Query: 407 SRELTS 412
            + L  
Sbjct: 425 LQRLNK 430


>gi|398304580|ref|ZP_10508166.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           vallismortis DV1-F-3]
          Length = 509

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 196/371 (52%), Gaps = 16/371 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  T++ ++A++ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ KK      L V GC+ Q     +R LK+   V ++ G   I R+ E++ E     E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVR  K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + ++G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DITYGLGDLMDELRKIDIPRIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL ++  + +   +   +H+PVQSGS  VL  M R+Y    +  +V  + E +P   +
Sbjct: 307 DDHLIDV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424

Query: 408 RELTSVFEAFT 418
           + L ++ +  +
Sbjct: 425 QRLNALVKEIS 435


>gi|423395928|ref|ZP_17373129.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG2X1-1]
 gi|423406803|ref|ZP_17383952.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG2X1-3]
 gi|401653670|gb|EJS71214.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG2X1-1]
 gi|401660093|gb|EJS77576.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG2X1-3]
          Length = 509

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/366 (31%), Positives = 197/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   +L   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DLEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETISLYREVEFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|281411880|ref|YP_003345959.1| RNA modification enzyme, MiaB family [Thermotoga naphthophila
           RKU-10]
 gi|281372983|gb|ADA66545.1| RNA modification enzyme, MiaB family [Thermotoga naphthophila
           RKU-10]
          Length = 443

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 127/397 (31%), Positives = 211/397 (53%), Gaps = 19/397 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA- 119
            Y+KTFGC  N++DSE MAG L   G+      EEAD+ +INTC V+  S+    + +  
Sbjct: 3   FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62

Query: 120 --KCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 174
             K K  +K +V VAGCV +  R+ L E     ++G + + +V E V+  L+G +V L  
Sbjct: 63  MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVLKVTEAVKRALQGEKVALFE 122

Query: 175 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
            H  +    DL ++R +K    + I  GC   CTYC   + RG   S  +E ++  VR +
Sbjct: 123 DHLDEYTH-DLSRIRSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSRPMEDILEEVREL 181

Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
              G +EV    ++  AYG+D+  G +L  LL         +G   +    + P    + 
Sbjct: 182 AKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS---KIEGIERIWFLTSYPTDFSDE 238

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           L E+  + R+P V   +H+PVQSGS+ +L  MNR YT  ++  +++ +   VP + I++D
Sbjct: 239 LIEV--IARNPKVAKSVHLPVQSGSNRILKLMNRSYTKEEYLALLERIRSKVPDVAISSD 296

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRE 409
           II GFP ET+EDF +T++L+++ +F +++++ + PR GT A +  K  VP     +R + 
Sbjct: 297 IIVGFPTETEEDFMETIDLVEKAQFERLNLAIYSPRKGTVAWKHYKDEVPYEEKVRRMQF 356

Query: 410 LTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVR 444
           L ++ +     L    +G+  R+ +   A +G+   R
Sbjct: 357 LMNLQKRINRKLNERYKGKTVRVIVEAQAKNGLFYGR 393


>gi|435845798|ref|YP_007308048.1| MiaB-like tRNA modifying enzyme [Natronococcus occultus SP4]
 gi|433672066|gb|AGB36258.1| MiaB-like tRNA modifying enzyme [Natronococcus occultus SP4]
          Length = 420

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 192/370 (51%), Gaps = 26/370 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D  +EAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVG-VQQIDRVVEVVEETLKGHEVRLLHRKK 178
                 L + GC  + QG    +E     + G V   D V E V       E        
Sbjct: 65  ADETADLYITGCMALAQG----EEFAAADVDGRVLHWDEVPEAV----TNGECPTTTPDA 116

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
            P LD         V ILPI  GC+  C+YC TK A G + S  +E  V +   ++  G 
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKRATGKIDSPPIEENVRKAEALLHAGA 169

Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           KE+ ++ +DTG YG D G      L   + EL  +G   +R+GM NP  +    +E+A V
Sbjct: 170 KEIRITGQDTGVYGWDEGERKLHRLLEEICEL--EGEFRVRVGMANPKGVHGIREELASV 227

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              +  +Y FLH PVQSGSD VL  M R++ + ++  VV+T  + +    ++TD I GFP
Sbjct: 228 FAEYDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVETFDDQLDYWTLSTDFIVGFP 287

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
            ETD D  Q++ L++E +  ++++++F  RPGT AA+MK +   + K+RS+E+++     
Sbjct: 288 TETDRDHEQSMALLRETRPEKINVTRFSKRPGTDAAKMKGLGGTIKKERSKEMSAAKREL 347

Query: 413 VFEAFTPYLG 422
           V EA+   +G
Sbjct: 348 VGEAYESMVG 357


>gi|448731554|ref|ZP_21713853.1| MiaB-like tRNA modifying enzyme [Halococcus saccharolyticus DSM
           5350]
 gi|445791882|gb|EMA42501.1| MiaB-like tRNA modifying enzyme [Halococcus saccharolyticus DSM
           5350]
          Length = 414

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 124/358 (34%), Positives = 199/358 (55%), Gaps = 23/358 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           + +++T+GC+ N+ +S  +  +L   G+   D  + AD+ ++NTCTV   +++ M     
Sbjct: 3   SYHLETYGCTANRGESRTIERRLRDGGHHPVDGPKAADVAILNTCTVVETTETNMLRRAR 62

Query: 120 KCKSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
           + +S    LVV GC  + QG  +  +L+  ++ G  ++  VV      L G E   +   
Sbjct: 63  ELESETADLVVTGCMALAQGE-EFADLD-ATVCGWDEVPEVV------LNG-ECPTVTPG 113

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
             P LD         + ILPI  GC+  C+YC TKHA G + S  VE  V + R ++  G
Sbjct: 114 TEPILD-------GVIGILPIARGCMSDCSYCITKHATGKIDSPPVEENVEKARALVHAG 166

Query: 238 VKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
            KE+ ++ +DTG YG D G   L  LLN I A    DG   +R+GM NP  +    +E+A
Sbjct: 167 AKEIRITGQDTGVYGWDDGERKLHELLNRICA---IDGDFRVRVGMANPKGVHGIREELA 223

Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
           EV   +  +Y+FLH PVQSGSD VL  M R++ + +FR VV T  + +    +ATD I G
Sbjct: 224 EVFAENEKLYNFLHAPVQSGSDDVLGEMRRQHQVREFREVVKTFDDHLDHWTLATDFITG 283

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           FP E+D D  +++ L++E +  ++++++F  RPGT AA MK +   + K+RS+ ++ +
Sbjct: 284 FPTESDADHEESMELLRETQPERINVTRFSKRPGTDAADMKGLGGTIKKERSKAMSDL 341


>gi|258516358|ref|YP_003192580.1| MiaB family RNA modification protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257780063|gb|ACV63957.1| RNA modification enzyme, MiaB family [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 435

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 197/375 (52%), Gaps = 23/375 (6%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
           ++T+ + T GC  NQ ++  +     + GY+  D +E A +++INTCTV   S      L
Sbjct: 3   SKTVAVATLGCKVNQYEAAAIVSLFRSKGYSEVDFTEPAGVYVINTCTVTHLSDRKSRQL 62

Query: 118 IAKCKSAKKPLVVA--GCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEV-- 171
           I +        V+A  GC  Q S  +L  L  V  +VG    D++V++VE + K  ++  
Sbjct: 63  IRRAVRTNPEAVIAVTGCYAQTSPGELMSLPEVDLVVGTSDRDKIVDLVEASSKAEKINA 122

Query: 172 -----RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
                +    ++LPA       + +    L I  GC   C+YC   +ARG L S   E++
Sbjct: 123 VADIEKACFYEELPA----PAGQGRVRAYLKIQEGCRNFCSYCIIPYARGPLRSRQPEAV 178

Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL-PPDGSTMLRIGMTNP 285
           +    +++A G KE+ L+   TGAYG D+       L AIV +L    G + LR+    P
Sbjct: 179 LNEAESLLAAGFKEIVLTGIQTGAYGVDLPAKTS--LAAIVEKLLRISGLSRLRLSSIEP 236

Query: 286 PFILEHLKEIAEVLRHPCVYS-FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
               +   E+ E++ H  ++   LH+P+QSGSD VL  M R YT   +  +++ L E +P
Sbjct: 237 N---DLSPELIELILHSKIFCPHLHIPLQSGSDRVLKLMRRRYTTEGYAKILNNLREKMP 293

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVV 403
            + + TDI+ GFPGET+EDF Q +  IK+  F  +H+ ++ PR GTPAA   ++V + V 
Sbjct: 294 NLAVTTDIMAGFPGETEEDFEQALGFIKDMAFSGMHVFKYSPRRGTPAAGFPQQVDARVK 353

Query: 404 KKRSRELTSVFEAFT 418
           ++RSR L ++ E  T
Sbjct: 354 EQRSRRLIALGEQLT 368


>gi|448320337|ref|ZP_21509824.1| MiaB-like tRNA modifying enzyme [Natronococcus amylolyticus DSM
           10524]
 gi|445605802|gb|ELY59717.1| MiaB-like tRNA modifying enzyme [Natronococcus amylolyticus DSM
           10524]
          Length = 417

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/356 (33%), Positives = 188/356 (52%), Gaps = 21/356 (5%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D  +EAD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRADEL 64

Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVG-VQQIDRVVEVVEETLKGHEVRLLHRKK 178
                 L + GC+   QG    +E     + G V   D V E V       E        
Sbjct: 65  ADETADLYITGCMALAQG----EEFAAADVDGRVLHWDEVPEAV----TNGECPTTTPDA 116

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
            P LD         V ILPI  GC+  C+YC TK A G + S ++E  V + R +I  G 
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKRATGKIDSPSIEENVEKARALIHAGA 169

Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           KE+ ++ +DTG YG D G      L + + +L  +G   +R+GM NP  +    +E+A V
Sbjct: 170 KELRITGQDTGVYGWDEGERKLHRLLSEICDL--EGEFRVRVGMANPKGVHGIREELATV 227

Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
              +  +Y FLH PVQSGSD VL  M R++ + ++  VV+T  + +    ++TD I GFP
Sbjct: 228 FAENDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVETFDDHLDYWTLSTDFIVGFP 287

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
            ETD D  Q++ L++E +  +V++++F  RPGT AA MK +   + K+RS+E+++ 
Sbjct: 288 TETDHDHAQSMALLRETRPEKVNVTRFSKRPGTDAAEMKGLGGTIKKERSKEMSAA 343


>gi|452974392|gb|EME74212.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           sonorensis L12]
          Length = 509

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 193/366 (52%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  TD++E+A++ L+NTC ++  +++ +   I  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDSTEDANVILLNTCAIRENAENKVFGEIGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ K       L V GC+ Q     +R LK+   V ++ G   I R+ E++ E     E
Sbjct: 128 LKALKMNNPDVILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSEAYLSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVR  K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 MVVEVWSKEGDVIENLPKVRHGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELHKIDIPRIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  VL  M R+Y    +  +V  + + +P   +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYLELVGKIKKAMPNASL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ET+E F +T++L +E +F   +   + PR GTPAA+M+  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETEEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMRDNVPMRVKKERL 424

Query: 408 RELTSV 413
           + L  +
Sbjct: 425 QRLNDL 430


>gi|455652050|gb|EMF30731.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           gancidicus BKS 13-15]
          Length = 508

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/389 (31%), Positives = 197/389 (50%), Gaps = 18/389 (4%)

Query: 45  LSKTGSLSPKIP--GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWL 100
           ++ +   SP +    T T  ++T+GC  N  DSE +AG L   GY  A   +  +AD+ +
Sbjct: 1   MTSSSDRSPAVDVLSTRTYEIRTYGCQMNVHDSERLAGLLEDAGYVRAPQGSDGDADVVV 60

Query: 101 INTCTVKSPSQSAMDTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GV 152
            NTC V+  + + +   +     K A +P   + V GC+ Q  RD  +K    V +V G 
Sbjct: 61  FNTCAVRENADNKLYGNLGHLAPKKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGT 120

Query: 153 QQIDRVVEVVEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCK 210
             I ++  ++E      E ++   + L A    LP  R + +   + I+VGC   CT+C 
Sbjct: 121 HNIGKLPVLLERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCI 180

Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270
               RG         ++  +  ++A+GV E+ L  ++  AYG DIG +       + A  
Sbjct: 181 VPALRGKEKDRRPGDILAEIEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACG 239

Query: 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS 330
             DG   +R    +P    + +  IA +   P V   LH+P+QSGSDA+L AM R Y   
Sbjct: 240 TIDGLERVRFTSPHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDAILKAMRRSYRQE 297

Query: 331 DFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390
            F  +++ +   +P   I+TDII GFPGET+EDF QT+++++E +F Q    Q+  RPGT
Sbjct: 298 RFLGIIEKVRAAIPHAAISTDIIVGFPGETEEDFQQTLHVVREARFAQAFTFQYSKRPGT 357

Query: 391 PAARMK-KVPSAVVKKRSRELTSVFEAFT 418
           PAA M  ++P  VV++R   L ++ E  +
Sbjct: 358 PAAEMDGQIPKQVVQERYERLVALQEEIS 386


>gi|319937480|ref|ZP_08011885.1| 2-methylthioadenine synthetase [Coprobacillus sp. 29_1]
 gi|319807320|gb|EFW03929.1| 2-methylthioadenine synthetase [Coprobacillus sp. 29_1]
          Length = 438

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/350 (34%), Positives = 182/350 (52%), Gaps = 19/350 (5%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T+   T GC  N  +SE M       GY   D  ++AD+++INTCTV +   S    +I
Sbjct: 4   KTVAFLTLGCKVNTYESEAMLKLFHQAGYEAVDFKDKADVYVINTCTVTNTGDSKSRQMI 63

Query: 119 AKC--KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEE-------TLK 167
            K   ++ K  + V GC  Q  S ++  +EGV +V G Q  +++V+ V E        +K
Sbjct: 64  RKAIRQNEKAIVCVVGCYSQVASEEVVSIEGVGVVLGTQFRNQIVDFVNEYKTTQKPVIK 123

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
             +V  L R     LD+ +  RN     L I  GC   CTYC   +ARG + S T ES++
Sbjct: 124 VADVMKLSR--FEDLDIDEFTRNTRA-FLKIQDGCNNFCTYCIIPYARGQIRSRTPESVL 180

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
            + ++++  G  E+ L+   T  YG+D    +   LL  +  ++   G   LRI      
Sbjct: 181 KQAQSLVDHGFVEIVLTGIHTAGYGQDFENYSFYDLLVDLTTKIK--GLKRLRISSIEMS 238

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
            I + + ++  +   P +   LH+P+QSG DA L  MNR YT ++F   +  L E +P +
Sbjct: 239 QITQEIIDL--IAMSPIIVDHLHIPIQSGCDATLKRMNRHYTTAEFSDKLRDLKEKLPSL 296

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396
            + TD+I GFPGET+E+F QT   I++  F Q+H+  +  R GTPAARMK
Sbjct: 297 SVTTDVIVGFPGETEEEFQQTYQWIEKMHFNQLHVFPYSIRKGTPAARMK 346


>gi|427414198|ref|ZP_18904388.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella ratti
           ACS-216-V-Col6b]
 gi|425714574|gb|EKU77577.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella ratti
           ACS-216-V-Col6b]
          Length = 436

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 203/386 (52%), Gaps = 21/386 (5%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           Y+ T+GC  N+SDSE +A QL   GY  T+N EEAD+ ++NTC V+  ++  +   I + 
Sbjct: 5   YIFTYGCQMNESDSERLAHQLETAGYTNTENFEEADLIILNTCCVRETAEHKIYGRIGEL 64

Query: 122 KSAK---KPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
           K  K   K L++A  GC+ Q ++    K    + IV G   +  + E+V E  + H+ ++
Sbjct: 65  KHLKEKNKNLIIAITGCMAQKNQADMFKRAPHIDIVLGTHNLRHINEMVAEVQRTHKHQI 124

Query: 174 -LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
            +        +L       F   +PI  GC   CTYC   H RG   S  +E++V  V+ 
Sbjct: 125 NIEMDNTVLHELEAKPMGTFSAWVPIMNGCNKFCTYCIVPHVRGREISRPIEAIVEDVKK 184

Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           +   G KE+ L  ++  +YG D   G +   L++A+   +P  G   +R  MT+ P  + 
Sbjct: 185 LGQSGHKEITLLGQNVNSYGLDFKDGTHFGDLIDALDG-IP--GIERIRY-MTSHPQDMN 240

Query: 291 HLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
             KE+ + L R   V + LH+P+QSGS+ +L  MNR YT+  ++ ++D   E + G+ + 
Sbjct: 241 --KEMIDALGRSTNVVTQLHLPIQSGSNRILQKMNRRYTVEHYKELIDYCREKIKGLTLT 298

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 408
           TD+I GFPGET+EDF  T+ L+K  ++   +   F  R GTPAA M  +VP  V + R +
Sbjct: 299 TDLIVGFPGETEEDFQATLQLLKNIRYDMAYTFIFSKRSGTPAATMADQVPEEVKRVRLQ 358

Query: 409 ELTSVFEAFTPYLG--MEGRVERIWI 432
            L  V    +  L   MEG+   I +
Sbjct: 359 ALMDVQNEISLELNKEMEGKTYEIIV 384


>gi|239826699|ref|YP_002949323.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
           sp. WCH70]
 gi|239806992|gb|ACS24057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. WCH70]
          Length = 523

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/366 (31%), Positives = 191/366 (52%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  TD  E+A++ L+NTC ++  +++ +   I  
Sbjct: 82  FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 141

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K  K+      L V GC+ Q     ++ LK+ + V ++ G   I R+  ++ E     E
Sbjct: 142 LKPLKQNNPDLLLGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPYILHEAYMSKE 201

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPK RR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 202 MVVEVWSKEGDVIENLPKARRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 262 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIPRIRFTTSHPRDF 320

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+  + +   +   +H+PVQSGS  +L  M R+YT  ++  +V  + E +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKLMGRKYTREEYLELVRKIKEAIPDVAL 378

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
            TDII GFP ET+E F +T++L +E +F   +   + PR GTPAA+M   VP  V K+R 
Sbjct: 379 TTDIIVGFPNETEEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMVDNVPMEVKKERL 438

Query: 408 RELTSV 413
           + L ++
Sbjct: 439 QRLNAL 444


>gi|210623865|ref|ZP_03294100.1| hypothetical protein CLOHIR_02051 [Clostridium hiranonis DSM 13275]
 gi|210153291|gb|EEA84297.1| hypothetical protein CLOHIR_02051 [Clostridium hiranonis DSM 13275]
          Length = 432

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/381 (32%), Positives = 190/381 (49%), Gaps = 31/381 (8%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  NQ ++E M       GY    + E AD+++INTCTV   S       I + K  
Sbjct: 8   TLGCKVNQYETEAMIELFEHAGYEHVQSEEYADVYVINTCTVTHMSDRKSRQYIRRVKK- 66

Query: 125 KKP---LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
           K P   + V GC  Q    ++ ++E V++V G      +VE VE      +V  +     
Sbjct: 67  KNPNSVIAVVGCYSQVAPEEILDIEEVNLVMGTNDRRHIVEKVEAVTCNDKVSTVD---- 122

Query: 180 PALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
              D+ KV+  + +EI          + I  GC   CTYC   +ARG + S  ++++V  
Sbjct: 123 ---DIMKVKEFEEIEITQTNGRTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDLDNIVEE 179

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           V+ + + G KEV L+     +YG+DI      LL+ I A    DG   +R     P    
Sbjct: 180 VKLLASKGYKEVVLTGIHVASYGKDIKDKEVKLLDVIKAVNEIDGIERIRTSSVEPILFT 239

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           +    + E+ +   V    H+ +QSG DA L  MNR YT  +++ +VD L E +P + I 
Sbjct: 240 DEF--VEEISKMNKVCPHFHLSLQSGCDATLDRMNRRYTTKEYKEIVDRLREKMPDVAIT 297

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 408
           TD+I GFPGET+E+F QT   +K+ +  Q+HI ++ PR GTPAA+M  ++   V   RS 
Sbjct: 298 TDVIVGFPGETNEEFKQTYEFLKDIELAQMHIFKYSPRKGTPAAKMDNQIDPQVKHMRSE 357

Query: 409 ELTSV----FEAFTP-YLGME 424
           +L S+    F+ F   ++G E
Sbjct: 358 QLISLSKNNFDKFAERFIGRE 378


>gi|448474662|ref|ZP_21602521.1| MiaB-like tRNA modifying enzyme [Halorubrum aidingense JCM 13560]
 gi|445817969|gb|EMA67838.1| MiaB-like tRNA modifying enzyme [Halorubrum aidingense JCM 13560]
          Length = 439

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/382 (32%), Positives = 197/382 (51%), Gaps = 46/382 (12%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T +++T+GCS N+ +S  +   L   G+   +  E+AD+ ++NTCTV   ++  M     
Sbjct: 3   TYHIETYGCSSNRGESREIERALRDGGHRPAEGPEDADVAILNTCTVVEKTERNMLRRAE 62

Query: 120 KCKSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
           +  +    LVV GC  + QG +  +E E         ID                +LH  
Sbjct: 63  ELAAETSDLVVTGCMALAQGEQ-FREAE---------ID--------------AEILHWD 98

Query: 178 KLPALDL----PKVRRNK------FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           ++P   L    P V  +        V ILPI  GC+  C+YC TK A G + S +VE  V
Sbjct: 99  EVPTYALNGECPTVTPDAEPVLDGVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENV 158

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
            + R ++  G KE+ ++ +DTG YG D G   LP LL+ I      DG   +R+GM NP 
Sbjct: 159 EKARALVHAGAKEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPG 215

Query: 287 FILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
            I    +E+  V  R+  +Y+F+H PVQSGSD VL+ M R++ +  FR VV    + +  
Sbjct: 216 GIHGIHEELVGVFARNEELYNFIHAPVQSGSDEVLADMRRQHRVDKFREVVAEFDDRLDH 275

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
             ++TD I GFP ET  D  ++++L+ E +  ++++++F  RPGT AA MK +   V K+
Sbjct: 276 WTLSTDFIVGFPTETAADHERSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKE 335

Query: 406 RSRELTS-----VFEAFTPYLG 422
           RS+ ++      V EA+   +G
Sbjct: 336 RSKAMSELKMEVVGEAYEAMVG 357


>gi|150019979|ref|YP_001305333.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
           melanesiensis BI429]
 gi|229891013|sp|A6LJ47.1|MIAB_THEM4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|149792500|gb|ABR29948.1| RNA modification enzyme, MiaB family [Thermosipho melanesiensis
           BI429]
          Length = 430

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/356 (32%), Positives = 191/356 (53%), Gaps = 19/356 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I++KT+GC  N++DSE     L   GY +T+N  +ADI ++NTC V+  S+    + I +
Sbjct: 4   IHIKTYGCQMNENDSEVAKFYLEEEGYEITNNENDADIVILNTCVVRKKSEDKFYSHIGE 63

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
            K   K + + GC  +  ++     GV  ++G + I  + + VE  + G +  +    K+
Sbjct: 64  LKKQNKIIGIMGCGAEKEKEKLFKRGVKFVIGTRAIPLIPQAVERAINGKKSAIFE-DKM 122

Query: 180 PALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
             +D  K+  R +K    + I  GC   CTYC   + RG   S  ++ ++  V  +   G
Sbjct: 123 DEIDYKKILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRKMDDIINEVENLAKSG 182

Query: 238 VKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG-MTNPP--FILEHL 292
           +KEV    ++  AYG+D+  G +L  LLN     L  D   + RI  +T+ P  F L+  
Sbjct: 183 IKEVTYLGQNVDAYGKDLNDGSSLAKLLN-----LTKDIEEIERIWFLTSYPTDFSLDIA 237

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
            E+A   +   +   +H+PVQ GS+ +L  MNR YT+ ++  +++ + ++VP   I++DI
Sbjct: 238 HEVANSSK---ITKNIHLPVQHGSNKILKKMNRRYTIEEYIELINDIRKIVPDASISSDI 294

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--KKVPSAVVKKR 406
           I GFP ET+EDF +TV L+K  KF +++++ + PR GT A +     VP  +  KR
Sbjct: 295 IVGFPDETEEDFEKTVELVKNIKFERLNLAIYSPREGTIAWKYFEDNVPRIIKTKR 350


>gi|333923603|ref|YP_004497183.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           [Desulfotomaculum carboxydivorans CO-1-SRB]
 gi|333749164|gb|AEF94271.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Desulfotomaculum carboxydivorans CO-1-SRB]
          Length = 459

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 199/377 (52%), Gaps = 25/377 (6%)

Query: 54  KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
           K  G +  ++ TFGC  N+ DSE +AG L   GY  T++ EEADI ++NTC V+  ++S 
Sbjct: 13  KSEGQKFYHVITFGCQMNERDSESLAGMLEDMGYLPTESREEADIIILNTCCVRETAESK 72

Query: 114 MDTLIAKCKSAK--KP---LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVE 163
           +  L+ + +  K  KP   + VAGC+ Q     K++      V I+ G   I  +  +++
Sbjct: 73  VFGLLGRLRQLKVAKPDLIIGVAGCMSQQEEVAKKIRHSFPFVDIIFGTHNIHELPRMIQ 132

Query: 164 ETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
           +  +  E  + +   +K  A ++P  R++K    + I  GC   CTYC   + RG   S 
Sbjct: 133 QVRENQEAVLEVWATEKGIAENVPVRRKDKLKAWVTIMYGCNNFCTYCIVPYVRGRERSR 192

Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN-----LPILLNAIVAELPPDGST 276
             E+++  ++ ++A G KEV L  ++  +YG+D+ ++     L + L+ I       G  
Sbjct: 193 NPENIIEEIKGLVAQGYKEVTLLGQNVNSYGKDLQMDYRFADLLLDLDKIT------GLK 246

Query: 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
            +R   ++P    + L +I       C +   H+P Q+GS+ +L  MNR YT   +  ++
Sbjct: 247 RIRFMTSHPRDFDQRLIDIIASTNKVCEH--FHLPAQAGSNRILKLMNRGYTREHYLQLI 304

Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396
           D + + +PG  I +DI+ GFPGET+EDF  T++L++  ++       +  R GTPAA+M+
Sbjct: 305 DNIRKAIPGASITSDIMVGFPGETEEDFADTLDLVRRVRYDSAFTFVYNIRSGTPAAKME 364

Query: 397 KVPSAVVKKRSRELTSV 413
           +VP  V   R ++L  +
Sbjct: 365 QVPEEVKSARIQKLIDL 381


>gi|347753157|ref|YP_004860722.1| MiaB family RNA modification protein [Bacillus coagulans 36D1]
 gi|347585675|gb|AEP01942.1| RNA modification enzyme, MiaB family [Bacillus coagulans 36D1]
          Length = 450

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 184/348 (52%), Gaps = 17/348 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E M       GY  TD    AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAMWQLFKKAGYERTDFETNADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 170
           +   ++    + V GC  Q S  ++ E+ GV +V G Q   +++  +E+ LK  +     
Sbjct: 63  RAVRQNPDAVVCVTGCYAQTSPGEILEIPGVDVVVGTQDRTKMLGYIEQYLKERKPVNAV 122

Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
             ++  +    +++P    ++    L I  GC   CT+C    ARG + S   E ++ + 
Sbjct: 123 KNIMKNRVYEEMEVPYFT-DRHRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVIAQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG+D+   NL +LL  +  E    G   +RI       + 
Sbjct: 182 QKLVNAGYKELVLTGIHTGGYGQDLKDYNLAMLLKDL--EEKVQGLKRVRISSIEASQLT 239

Query: 290 EHLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ +V++H   V   +HVP+QSGSD VL  M R+YT+  F   +  L E +PG+ +
Sbjct: 240 D---EVIDVIKHSKVVVRHMHVPIQSGSDTVLKRMRRKYTMDQFAERITKLKEALPGLAL 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396
            +D+I GFPGET+E+F +T N IKE++F ++H+  + PR GTPAARMK
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHRFAELHVFPYSPRTGTPAARMK 344


>gi|70726621|ref|YP_253535.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           haemolyticus JCSC1435]
 gi|123734986|sp|Q4L5Z6.1|MIAB_STAHJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|68447345|dbj|BAE04929.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 514

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 191/365 (52%), Gaps = 16/365 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L A GY  T++  EAD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILQALGYTATEDINEADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V ++ G   I ++ E++EE    K
Sbjct: 129 NLKHLKKNRPEALIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  DG KE+ L  ++  +YG+DI  +L   L  ++ ++       +R   ++P  
Sbjct: 249 EEVRGLARDGYKEITLLGQNVNSYGKDIK-DLEYGLGDLLEDISKIDIPRVRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  + +   +   +H+PVQSG++AVL  M R+YT   +  +V+ + + +P + 
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIKKSIPNVA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T++L  E +F   +   +  R GTPAA+MK  VP  V K R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDGTPAAKMKDNVPEDVKKAR 425

Query: 407 SRELT 411
            + L 
Sbjct: 426 LQRLN 430


>gi|342732600|ref|YP_004771439.1| MiaB-like tRNA modifying protein [Candidatus Arthromitus sp.
           SFB-mouse-Japan]
 gi|384455992|ref|YP_005668587.1| MiaB family RNA modification protein [Candidatus Arthromitus sp.
           SFB-mouse-Yit]
 gi|417965715|ref|ZP_12607202.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-4]
 gi|417969118|ref|ZP_12610080.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-co]
 gi|418015993|ref|ZP_12655558.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
           SFB-mouse-NYU]
 gi|418372854|ref|ZP_12964946.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
           SFB-mouse-SU]
 gi|342330055|dbj|BAK56697.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
           SFB-mouse-Japan]
 gi|345506328|gb|EGX28622.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
           SFB-mouse-NYU]
 gi|346984335|dbj|BAK80011.1| RNA modification enzyme, MiaB family [Candidatus Arthromitus sp.
           SFB-mouse-Yit]
 gi|380335944|gb|EIA26026.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-4]
 gi|380338487|gb|EIA27374.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-co]
 gi|380342523|gb|EIA30968.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
           SFB-mouse-SU]
          Length = 434

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 124/399 (31%), Positives = 211/399 (52%), Gaps = 34/399 (8%)

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
           + T GC  N  D+E M   L    + +    E AD++ INTCTV + S       I+KCK
Sbjct: 5   ISTLGCRVNIYDTEIMISALKEDDFEVVSYDEFADVYCINTCTVTNTSDKKSRQFISKCK 64

Query: 123 SAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQ---QIDRVVEVVEETLKGHEVRLLH 175
                 ++A  GC PQ S+D + E++ V+I+ G +   Q+   + +  ET  G +V  + 
Sbjct: 65  KINPKAIIAMVGCYPQVSKDEVSEIKDVNIILGNRFKGQLPYYIRLFLET--GKQVIKVD 122

Query: 176 RKKLPALDLP----KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
              L  +       +  ++K    + I  GC   CTYC    ARG + S     +   VR
Sbjct: 123 DNILRNISFEDRSIRTLKDKHRAFIKIQDGCNKFCTYCIIPFARGGVCSKEPRKIFDEVR 182

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPIL-LNAIVAELPPDGSTMLRIGMTNPPF--- 287
           +++++G KEV L+  +T +YG D+G+++ ++ L  ++ E+  DG   +R+G  +P F   
Sbjct: 183 SLVSNGYKEVVLTGINTTSYGDDLGIDINLVSLIELLDEI--DGLERIRVGSVDPEFFTT 240

Query: 288 -ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
            I+E + +I +++ H       H+ +QSG D+VL  M R+Y +S ++ VV+ L   +  +
Sbjct: 241 EIVERMSKIKKLMPH------FHLSLQSGCDSVLKRMRRKYDISLYKKVVEDLRREIEDV 294

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
            I TDII GFPGETD++FN+T N +K  K   +H+ ++  R GT AA M+ +V   + +K
Sbjct: 295 SITTDIIVGFPGETDDEFNETYNFLKNIKLQDMHVFKYSKRNGTKAAEMENQVDVHIKEK 354

Query: 406 RSRELTSV-----FEAFTPYLGMEGRVERIWITEIAADG 439
           RS+ L  +      +    YLG    ++ ++ TE++ + 
Sbjct: 355 RSKSLIDLNKLNKIDFQKKYLGQT--LDVLYCTELSDNN 391


>gi|228475022|ref|ZP_04059750.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
           SK119]
 gi|228271007|gb|EEK12395.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
           SK119]
          Length = 514

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 192/365 (52%), Gaps = 16/365 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L A  Y  TD+  EAD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V ++ G   I ++ E++EE    K
Sbjct: 129 NLKHLKKNRPETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   + ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G KE+ L  ++  +YG+DI  +L   L+ ++ ++       +R   ++P  
Sbjct: 249 EEVRELAREGYKEITLLGQNVNSYGKDIK-DLDYGLSDLLEDISKIDIPRVRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  + +   +   +H+PVQSG++AVL  M R+Y+   +  +VD + E +P + 
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNAVLKIMGRKYSRESYLDLVDRIKEAIPNVA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T++L  E +F   +   +  R GTPAA+MK  VP+ V K R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKDR 425

Query: 407 SRELT 411
            + L 
Sbjct: 426 LQRLN 430


>gi|254431186|ref|ZP_05044889.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobium sp. PCC 7001]
 gi|197625639|gb|EDY38198.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobium sp. PCC 7001]
          Length = 476

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 129/392 (32%), Positives = 194/392 (49%), Gaps = 23/392 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           + ++ TFGC  N++DSE MAG L A GY       EAD+ L NTCT++  ++  + + + 
Sbjct: 33  SYWITTFGCQMNKADSERMAGILEAMGYREAGAELEADLVLYNTCTIRDNAEQKVYSYLG 92

Query: 120 KCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
           +    K+      LVVAGCV Q  G   L+ +  + +V G Q  +R+  ++ +  +G +V
Sbjct: 93  RQAQRKRANPNLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLETLLSQVEQGQQV 152

Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
                  +   D+   RR+  V    +NV  GC   CTYC     RG   S   E++   
Sbjct: 153 VATEEHHILE-DITTARRDSSV-CAWVNVIYGCNERCTYCVVPSVRGQEQSRLPEAIRLE 210

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMT 283
           +  + A G KE  L  ++  AYGRD+      G     L + +      +G   +R   +
Sbjct: 211 MEGLAARGFKETTLLGQNIDAYGRDLPGITPEGRRRHTLTDLLQFVHDVEGIERIRFATS 270

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           +P +  E L +    L  P V    H+P QSG DAVL AM R YT+  +R +V  + E +
Sbjct: 271 HPRYFTERLIDACAAL--PKVCEHFHIPFQSGDDAVLKAMARGYTVERYRRIVHRIRERM 328

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
           P   I+ D+I  FPGETD  F  T+ L++E  F QV+ + + PRP TPAA      S  V
Sbjct: 329 PDAAISADVIVAFPGETDAQFRNTLRLVEEIGFDQVNTAAYSPRPNTPAADWPDQLSEAV 388

Query: 404 K-KRSRELTSVFE--AFTPYLGMEGRVERIWI 432
           K +R REL ++ E  A        GR E++ +
Sbjct: 389 KVERLRELNALVEQQARRRSARYAGRTEQVLV 420


>gi|196247551|ref|ZP_03146253.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. G11MC16]
 gi|229890686|sp|A4IMH7.2|MIAB_GEOTN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|196212335|gb|EDY07092.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. G11MC16]
          Length = 523

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 191/368 (51%), Gaps = 16/368 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  TD  E+A++ L+NTC ++  +++ +   +  
Sbjct: 82  FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGELGY 141

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K  K       L V GC+ Q     ++ LK+ + V ++ G   I R+  ++ E     E
Sbjct: 142 LKPLKTTNPDLLLGVCGCMSQEEAVVNKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 201

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVR+      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 202 MVVEVWSKEGDVVENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 262 EVRQLAAQGYKEITLLGQNVNAYGKDFN-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 320

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+  + +   +   +H+PVQSGS  +L  M R+YT  ++  +V  +   +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVAL 378

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA+M   VP  V K+R 
Sbjct: 379 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMNDNVPMEVKKERL 438

Query: 408 RELTSVFE 415
           + L ++ +
Sbjct: 439 QRLNALVQ 446


>gi|357058521|ref|ZP_09119372.1| MiaB-like tRNA modifying enzyme [Selenomonas infelix ATCC 43532]
 gi|355373849|gb|EHG21157.1| MiaB-like tRNA modifying enzyme [Selenomonas infelix ATCC 43532]
          Length = 438

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 130/403 (32%), Positives = 201/403 (49%), Gaps = 31/403 (7%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
           G +  +M T GC  NQ ++E M G     GY +    E AD+++INTC+V   S      
Sbjct: 8   GVKAAFM-TLGCKVNQFETETMEGLFRVRGYDIVPFEERADVYVINTCSVTHLSDRKSRQ 66

Query: 117 LIAKCKSAKKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH--- 169
           LI +         + V GC  Q    +++ L+GV +V G ++  R+V+ VE +L+     
Sbjct: 67  LIRRAARTNPAACIAVTGCYAQVAPEEIRALDGVRVVIGTKERARIVDYVEASLRADTGA 126

Query: 170 --------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
                   + R+   + +P   LP   R      L I  GC   CT+C   +ARG + S 
Sbjct: 127 FGTITDIMQARVF--EDIPLHALPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSR 180

Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
            + ++   +R ++  G  EV L+    GAYG D+    P L +A    L   G   LR+G
Sbjct: 181 ELSAVAREMRLLVDAGFHEVVLTGIHLGAYGIDLA-ERPTLADACRTALAERGLRRLRLG 239

Query: 282 MTNPPFILEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
                  +E   ++ E++R  P   + LH+P+Q+GSDAVL AMNR YT + F  +V  + 
Sbjct: 240 SLES---VELSADLLELMRTEPRFAAHLHLPLQAGSDAVLRAMNRHYTTAQFAQLVMEVR 296

Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVP 399
             VPG+ I+TDII GFPGET+ DF   ++ ++   F ++H+  +  R GTPAA R  +VP
Sbjct: 297 AAVPGVAISTDIIVGFPGETEADFAAGMDFVRRMGFARMHVFPYSARRGTPAARRTDQVP 356

Query: 400 SAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWITEIAADGI 440
             V K+R+  + ++ E      +  M G V  +   E   DG+
Sbjct: 357 PMVRKERAARMQALAEELAEGYHRSMLGSVAEVLF-ETQEDGV 398


>gi|42783437|ref|NP_980684.1| hypothetical protein BCE_4391 [Bacillus cereus ATCC 10987]
 gi|206978420|ref|ZP_03239289.1| RNA modification enzyme, MiaB family [Bacillus cereus H3081.97]
 gi|217961800|ref|YP_002340370.1| MiaB family RNA modification protein [Bacillus cereus AH187]
 gi|222097755|ref|YP_002531812.1| fe-s oxidoreductase [Bacillus cereus Q1]
 gi|229141048|ref|ZP_04269590.1| hypothetical protein bcere0013_41420 [Bacillus cereus BDRD-ST26]
 gi|229198438|ref|ZP_04325142.1| hypothetical protein bcere0001_39660 [Bacillus cereus m1293]
 gi|375286316|ref|YP_005106755.1| hypothetical protein BCN_4222 [Bacillus cereus NC7401]
 gi|384182130|ref|YP_005567892.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar finitimus
           YBT-020]
 gi|402555555|ref|YP_006596826.1| Fe-S oxidoreductase [Bacillus cereus FRI-35]
 gi|423354803|ref|ZP_17332428.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           IS075]
 gi|423373811|ref|ZP_17351150.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           AND1407]
 gi|423570550|ref|ZP_17546795.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           MSX-A12]
 gi|423574010|ref|ZP_17550129.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           MSX-D12]
 gi|423604040|ref|ZP_17579933.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD102]
 gi|42739366|gb|AAS43292.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gi|206743376|gb|EDZ54814.1| RNA modification enzyme, MiaB family [Bacillus cereus H3081.97]
 gi|217065337|gb|ACJ79587.1| RNA modification enzyme, MiaB family [Bacillus cereus AH187]
 gi|221241813|gb|ACM14523.1| Fe-S oxidoreductase [Bacillus cereus Q1]
 gi|228584941|gb|EEK43055.1| hypothetical protein bcere0001_39660 [Bacillus cereus m1293]
 gi|228642326|gb|EEK98615.1| hypothetical protein bcere0013_41420 [Bacillus cereus BDRD-ST26]
 gi|324328214|gb|ADY23474.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar finitimus
           YBT-020]
 gi|358354843|dbj|BAL20015.1| conserved hypothetical protein [Bacillus cereus NC7401]
 gi|401085807|gb|EJP94041.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           IS075]
 gi|401095212|gb|EJQ03272.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           AND1407]
 gi|401203746|gb|EJR10581.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           MSX-A12]
 gi|401212579|gb|EJR19322.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           MSX-D12]
 gi|401245726|gb|EJR52079.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD102]
 gi|401796765|gb|AFQ10624.1| Fe-S oxidoreductase [Bacillus cereus FRI-35]
          Length = 450

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/363 (34%), Positives = 194/363 (53%), Gaps = 18/363 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+  DG   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--DGLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 REL 410
             L
Sbjct: 357 HRL 359


>gi|428778989|ref|YP_007170775.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Dactylococcopsis salina PCC 8305]
 gi|428693268|gb|AFZ49418.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Dactylococcopsis salina PCC 8305]
          Length = 447

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 194/362 (53%), Gaps = 26/362 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
           ++ TFGC  N++DSE MAG L A GY   ++   AD+ + NTCT++  ++  + + +   
Sbjct: 10  HITTFGCQMNKADSERMAGILDAMGYQAEEDPYLADLVVYNTCTIRDNAEQKVYSYLGRQ 69

Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K KSA   LVVAGCV Q  G + L+ +  + +V G Q  +R+ +++E+  +G++V +
Sbjct: 70  AKRKQKSADLTLVVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLGDLLEQVQEGNQV-V 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                    D+ K RR+  +    +NV  GC   C+YC   + RG   S T E++   + 
Sbjct: 129 ATEPIYIMEDITKPRRDSDISAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAIREEME 187

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMT 283
           T+ A G +EV L  ++  AYGRD+  + P          L   V ++P  G   +R   +
Sbjct: 188 TLAAQGYQEVTLLGQNIDAYGRDLPGSTPEGRHKHTFTDLLYYVHDVP--GIERIRFATS 245

Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
           +P +  E L K  AE+   P V    H+P QSG + +L AM+R YT   +R +VD +   
Sbjct: 246 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNEILKAMSRGYTHEKYRRIVDKIRHY 302

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
           +P   I+ D I  FPGET+E F  T+ L+ + +F Q++ + + PRPGTPAA  +   S  
Sbjct: 303 LPDAAISADAIVAFPGETEEQFQNTLKLVDDVEFDQLNTAAYSPRPGTPAANWEDQLSDE 362

Query: 403 VK 404
           VK
Sbjct: 363 VK 364


>gi|308233434|ref|ZP_07664171.1| RNA modification enzyme, MiaB family protein [Atopobium vaginae DSM
           15829]
          Length = 455

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 195/371 (52%), Gaps = 18/371 (4%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS----AM 114
           +T  +KTFGC  N  DSE +AG L   G       EEADI +  TC+V+  + +    A+
Sbjct: 10  KTYLIKTFGCQMNLHDSERVAGLLDDCGANEVATFEEADIVIFMTCSVREKADTHLYGAV 69

Query: 115 DTLIAKCKS--AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
             L+    S   K+ + V GC+ Q  G++  + +  V +V G   +  V E++ E  + +
Sbjct: 70  SNLVTLPPSPCGKRVIAVGGCIAQRDGAKLREHVPNVDVVFGTSALASVPELLCEAFESN 129

Query: 170 E----VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
           +    V  + + +  + DLP  R   F   +PI  GC   CT+C   + RG   S  +E 
Sbjct: 130 DDEVFVDTIEKNRGFSTDLPSKRDQSFHAWVPIMTGCNNFCTFCIVPYVRGRERSRVLER 189

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
           +V  VR +  DGV+EV L  ++  +YGRD+    P     ++ ++   G   +R   +NP
Sbjct: 190 VVDEVRRLKDDGVREVTLLGQNVNSYGRDL-YKKPCFAE-LLRKVGEVGIERIRFTSSNP 247

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             + +  + IA +   P V   LH+ VQSGS  +L AM+R YT   +  V+D L   +P 
Sbjct: 248 KDLSD--ETIAAMAETPAVMPQLHLAVQSGSTRILKAMHRSYTREKYLEVIDHLKSAMPD 305

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVK 404
           + ++TDII GFPGET+EDF +T++L++E ++       +  RPGTPAA ++   P  V++
Sbjct: 306 IALSTDIIVGFPGETEEDFEETLSLVREVEYSSAFTFIYSKRPGTPAANIEDTTPHEVIQ 365

Query: 405 KRSRELTSVFE 415
           +R   LT + E
Sbjct: 366 QRFNRLTDLIE 376


>gi|188589299|ref|YP_001920259.1| hypothetical protein CLH_0864 [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499580|gb|ACD52716.1| conserved hypothetical protein [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 434

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 114/360 (31%), Positives = 192/360 (53%), Gaps = 16/360 (4%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  NQ ++E M  +    GY++TD  + AD+++INTCTV +        +I+K +  
Sbjct: 7   TLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIISKARRT 66

Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLKGHEVRLLH 175
               ++A  GC  Q    ++ ++EGV +V G +    +V  V     E+ ++     +L 
Sbjct: 67  NSNAIIAVVGCYSQIAPEEVSKIEGVDVVLGTRNKGDIVYFVNKARDEKAIQVSVNEVLK 126

Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
            K+   L++ + + +K    L I  GC   CT+C   +ARG   S   E ++  V+ +  
Sbjct: 127 NKEFEELNIEEYQ-DKTRAFLKIQDGCNRFCTFCLIPYARGATCSKKPEKVIEEVKKLAE 185

Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 294
            G KEV LS   T +YG D+G  + ++  +++ ++   DG   +RIG   P F  + +  
Sbjct: 186 HGFKEVILSGIHTASYGVDLGAGVTLI--SLLEDIEKIDGIDRVRIGSIEPAFFTDEVIN 243

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
             + ++  C +   H+ +QSGSDA L  MNR YT  ++   V TL + +  + I TD+I 
Sbjct: 244 KIKNMKKLCPH--FHLSLQSGSDATLKRMNRRYTADEYAKTVQTLRDNIQDVSITTDLIV 301

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV 413
           GFPGET+E+FN+T   +K+ K  +VH+ ++ PR GT AA M  ++   +  KRS+ L+ +
Sbjct: 302 GFPGETEEEFNETYEYLKKLKLTKVHLFKYSPRKGTKAAEMPNQIDGTIKDKRSKILSEL 361


>gi|394994048|ref|ZP_10386784.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
           916]
 gi|393805127|gb|EJD66510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
           916]
          Length = 509

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 195/371 (52%), Gaps = 16/371 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  T++ ++A++ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ KK      L V GC+ Q     +R LK+   V ++ G   I R+ E++ E     E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             + +  ++     +LPKVR  K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + ++G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS A+L  M R+Y    +  +V  +   +P   +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424

Query: 408 RELTSVFEAFT 418
           + L  + +  +
Sbjct: 425 QRLNDLVKEIS 435


>gi|206969427|ref|ZP_03230381.1| RNA modification enzyme, MiaB family [Bacillus cereus AH1134]
 gi|229180587|ref|ZP_04307929.1| hypothetical protein bcere0005_39320 [Bacillus cereus 172560W]
 gi|229192521|ref|ZP_04319483.1| hypothetical protein bcere0002_41730 [Bacillus cereus ATCC 10876]
 gi|365158901|ref|ZP_09355090.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus sp.
           7_6_55CFAA_CT2]
 gi|423411893|ref|ZP_17389013.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG3O-2]
 gi|423432321|ref|ZP_17409325.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG4O-1]
 gi|206735115|gb|EDZ52283.1| RNA modification enzyme, MiaB family [Bacillus cereus AH1134]
 gi|228590945|gb|EEK48802.1| hypothetical protein bcere0002_41730 [Bacillus cereus ATCC 10876]
 gi|228603011|gb|EEK60490.1| hypothetical protein bcere0005_39320 [Bacillus cereus 172560W]
 gi|363626189|gb|EHL77190.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus sp.
           7_6_55CFAA_CT2]
 gi|401103961|gb|EJQ11938.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG3O-2]
 gi|401117077|gb|EJQ24915.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG4O-1]
          Length = 450

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 125/363 (34%), Positives = 194/363 (53%), Gaps = 18/363 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+  DG   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--DGLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 REL 410
             L
Sbjct: 357 HRL 359


>gi|375362347|ref|YP_005130386.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
           amyloliquefaciens subsp. plantarum CAU B946]
 gi|421731627|ref|ZP_16170750.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           amyloliquefaciens subsp. plantarum M27]
 gi|451346926|ref|YP_007445557.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           amyloliquefaciens IT-45]
 gi|371568341|emb|CCF05191.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           amyloliquefaciens subsp. plantarum CAU B946]
 gi|407073840|gb|EKE46830.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           amyloliquefaciens subsp. plantarum M27]
 gi|449850684|gb|AGF27676.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           amyloliquefaciens IT-45]
          Length = 509

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 195/371 (52%), Gaps = 16/371 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  T++ ++A++ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ KK      L V GC+ Q     +R LK+   V ++ G   I R+ E++ E     E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             + +  ++     +LPKVR  K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + ++G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS A+L  M R+Y    +  +V  +   +P   +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424

Query: 408 RELTSVFEAFT 418
           + L  + +  +
Sbjct: 425 QRLNDLVKEIS 435


>gi|291279773|ref|YP_003496608.1| tRNA-i(6)A37 thiotransferase enzyme [Deferribacter desulfuricans
           SSM1]
 gi|290754475|dbj|BAI80852.1| tRNA-i(6)A37 thiotransferase enzyme [Deferribacter desulfuricans
           SSM1]
          Length = 439

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 198/386 (51%), Gaps = 20/386 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +++KTFGC  N+ DSE +A      GY+LTDN EEA   +INTC+V+      +++ + +
Sbjct: 3   LFIKTFGCQMNEYDSERIAAIFQERGYSLTDNLEEASFAVINTCSVREKPYHKVESELGR 62

Query: 121 CKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
            K  KK      + V GCV Q  G + L   + V +V G   IDR+  +++   KG  + 
Sbjct: 63  LKKFKKLNPDFKIAVCGCVAQQDGEKFLDRFDYVDLVFGTSAIDRLHSLIDLVEKGERI- 121

Query: 173 LLHRKKLPALDLPKVRRNKFVE-ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
               +    L +P   R K V   + I  GC   C+YC   + RG   S     ++  ++
Sbjct: 122 CDTSEGDDELSIPVFGRGKKVSAFVTIMKGCDNFCSYCIVPYVRGREKSRKPSEILDEIK 181

Query: 232 TVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
            ++ +GVKEV L  ++  +YG+  D  +N P LL  +      +G   +R   ++P    
Sbjct: 182 YLVNNGVKEVTLLGQNVNSYGKGLDEDINFPKLLYKV---HDINGLERIRFVTSHPKDFD 238

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           + L  I  +   P V  +LH+P+Q+GS+ VL  MNR+YT  ++R  V    E++P + ++
Sbjct: 239 DEL--IFAIRDLPKVCEYLHLPLQAGSNKVLKMMNRKYTYEEYRDKVLKAKEMIPDLALS 296

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MKKVPSAVVKKRSR 408
           +D I GFPGET EDF +T+  IKE ++  +   ++ PRP T A+  +  +      +R  
Sbjct: 297 SDFIVGFPGETVEDFAETLKAIKEIRYESIFAFKYSPRPKTKASNFVDDITDDEKSRRLN 356

Query: 409 ELTSVFEAFTPYLGME--GRVERIWI 432
           EL S+    T  +     G+V+ I +
Sbjct: 357 ELLSIQSKITEEINKSYVGKVQEILV 382


>gi|328944037|ref|ZP_08241502.1| tRNA-I(6)A37 thiotransferase [Atopobium vaginae DSM 15829]
 gi|327492006|gb|EGF23780.1| tRNA-I(6)A37 thiotransferase [Atopobium vaginae DSM 15829]
          Length = 460

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 195/371 (52%), Gaps = 18/371 (4%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS----AM 114
           +T  +KTFGC  N  DSE +AG L   G       EEADI +  TC+V+  + +    A+
Sbjct: 15  KTYLIKTFGCQMNLHDSERVAGLLDDCGANEVATFEEADIVIFMTCSVREKADTHLYGAV 74

Query: 115 DTLIAKCKS--AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
             L+    S   K+ + V GC+ Q  G++  + +  V +V G   +  V E++ E  + +
Sbjct: 75  SNLVTLPPSPCGKRVIAVGGCIAQRDGAKLREHVPNVDVVFGTSALASVPELLCEAFESN 134

Query: 170 E----VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
           +    V  + + +  + DLP  R   F   +PI  GC   CT+C   + RG   S  +E 
Sbjct: 135 DDEVFVDTIEKNRGFSTDLPSKRDQSFHAWVPIMTGCNNFCTFCIVPYVRGRERSRVLER 194

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
           +V  VR +  DGV+EV L  ++  +YGRD+    P     ++ ++   G   +R   +NP
Sbjct: 195 VVDEVRRLKDDGVREVTLLGQNVNSYGRDL-YKKPCFAE-LLRKVGEVGIERIRFTSSNP 252

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             + +  + IA +   P V   LH+ VQSGS  +L AM+R YT   +  V+D L   +P 
Sbjct: 253 KDLSD--ETIAAMAETPAVMPQLHLAVQSGSTRILKAMHRSYTREKYLEVIDHLKSAMPD 310

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVK 404
           + ++TDII GFPGET+EDF +T++L++E ++       +  RPGTPAA ++   P  V++
Sbjct: 311 IALSTDIIVGFPGETEEDFEETLSLVREVEYSSAFTFIYSKRPGTPAANIEDTTPHEVIQ 370

Query: 405 KRSRELTSVFE 415
           +R   LT + E
Sbjct: 371 QRFNRLTDLIE 381


>gi|399577306|ref|ZP_10771059.1| miab-like tRNA modifying enzyme [Halogranum salarium B-1]
 gi|399237689|gb|EJN58620.1| miab-like tRNA modifying enzyme [Halogranum salarium B-1]
          Length = 416

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 120/377 (31%), Positives = 195/377 (51%), Gaps = 19/377 (5%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S ++   L   G+       +AD+ ++NTCTV   ++  M T   + 
Sbjct: 5   HIETYGCTSNRGESRHIEQALRDGGHHPASGPGDADVAILNTCTVVEKTERNMLTRAKEL 64

Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
           +     L++ GC+      L + E     GV       + V +     E   +     P 
Sbjct: 65  EEETADLIITGCMA-----LAQGEEFREAGVDADVLHWDDVPQAAMNGECPTVTPDTEPV 119

Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 241
           LD         V ILPI  GC+  C+YC TK A G + S +VE  V + R ++  G KE+
Sbjct: 120 LD-------GTVGILPIARGCMSNCSYCITKFATGRIDSPSVEENVRKARALVHAGAKEL 172

Query: 242 WLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
            ++ +DTG YG D G   LP LL+ I      +G   +R+GM NP  I    +E+ EV  
Sbjct: 173 RITGQDTGVYGWDKGDRKLPELLDRIC---DIEGDFRVRVGMANPGGIHGIQEELVEVFA 229

Query: 301 -HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
            +  +Y+F+H+PVQSGSD VL  M R++ +  F  +V+   + +    ++TD I GFP E
Sbjct: 230 ANEKLYNFIHLPVQSGSDDVLEDMRRQHRVDKFLDIVEVFDDRLDYWTLSTDFIVGFPTE 289

Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT- 418
           TDED   ++ L+KE +  ++++++F  RPGT AA MK +   + K+RS+E++S       
Sbjct: 290 TDEDHAMSMALMKEVRPEKINVTRFSKRPGTDAADMKGLGGTLKKERSKEMSSAKMDIVA 349

Query: 419 -PYLGMEGRVERIWITE 434
             Y  M G  + + + E
Sbjct: 350 DAYESMVGTTQNVLVVE 366


>gi|418620502|ref|ZP_13183306.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
           VCU122]
 gi|374822632|gb|EHR86652.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
           VCU122]
          Length = 514

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 116/366 (31%), Positives = 191/366 (52%), Gaps = 16/366 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L A  Y  TD+  EAD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V ++ G   I ++ E++EE    K
Sbjct: 129 NLKHLKKNRPETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   + ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G KE+ L  ++  +YG+DI  +L   L  ++ ++       +R   ++P  
Sbjct: 249 EEVRELAREGYKEITLLGQNVNSYGKDIK-DLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  + +   +   +H+PVQSG++AVL  M R+Y+   +  +VD + E +P + 
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNAVLKIMGRKYSRESYLDLVDRIKEAIPNVA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T++L  E +F   +   +  R GTPAA+MK  VP+ V K R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKDR 425

Query: 407 SRELTS 412
            + L  
Sbjct: 426 LQRLNK 431


>gi|154686118|ref|YP_001421279.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           amyloliquefaciens FZB42]
 gi|429505255|ref|YP_007186439.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           amyloliquefaciens subsp. plantarum AS43.3]
 gi|229890448|sp|A7Z4X2.1|MIAB_BACA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|154351969|gb|ABS74048.1| YmcB [Bacillus amyloliquefaciens FZB42]
 gi|429486845|gb|AFZ90769.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           amyloliquefaciens subsp. plantarum AS43.3]
          Length = 509

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 195/371 (52%), Gaps = 16/371 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  T++ ++A++ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ KK      L V GC+ Q     +R LK+   V ++ G   I R+ E++ E     E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             + +  ++     +LPKVR  K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + ++G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS A+L  M R+Y    +  +V  +   +P   +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424

Query: 408 RELTSVFEAFT 418
           + L  + +  +
Sbjct: 425 QRLNDLVKEIS 435


>gi|150400142|ref|YP_001323909.1| MiaB-like tRNA modifying protein [Methanococcus vannielii SB]
 gi|150012845|gb|ABR55297.1| MiaB-like tRNA modifying enzyme [Methanococcus vannielii SB]
          Length = 421

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 109/354 (30%), Positives = 188/354 (53%), Gaps = 5/354 (1%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           IY++ +GC+ N +D+E +   +  F  + +T +  ++DI ++NTC V+  ++  M + I 
Sbjct: 7   IYIEGYGCTLNTADTEIIKNSIKEFQNFEITTDLNDSDIIVVNTCIVRQETEHRMISRIE 66

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
             KS  K +VVAGC+ +      E     +V  ++      ++ +    ++ +      L
Sbjct: 67  YFKSLNKKVVVAGCMAKALPKKIEYFSDCMVLPREAQNSGNILFKKFIENKEKTNFENNL 126

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
               L K+     +  +PI+ GCLG C+YC  K ARG L SY  + +V +    I  G K
Sbjct: 127 SE-KLNKLSSKGLISPMPISEGCLGNCSYCIVKKARGTLESYDRKLIVKKAMEFINSGTK 185

Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
            + ++++DT  YG D   NL  L++ I +E+P   +  +RIGM +  F    L E+ E  
Sbjct: 186 CLLITAQDTACYGYDNNDNLSNLIDDI-SEIPEKFA--MRIGMMHAKFAEPILDELVESF 242

Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
           +   V  FLH+P+QSG + VL  M R YT+ +F +V++     +  +   TD+I GFP E
Sbjct: 243 KSEKVVKFLHLPIQSGDNQVLKDMGRNYTVDEFISVLNEFKRKIKDLNFTTDVIVGFPSE 302

Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           T++ FN T+ ++K+ K    H +++  R  T AA +K+V + + K+RS  L  +
Sbjct: 303 TEDAFNNTLEVLKKIKPDFTHGAKYSQRKYTKAALLKQVDTKIRKERSEILNEL 356


>gi|225865753|ref|YP_002751131.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB102]
 gi|225786232|gb|ACO26449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB102]
          Length = 509

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 197/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R ++A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLVANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNAL 430


>gi|452855648|ref|YP_007497331.1| enzyme for ms(2)i(6)A formation for tRNA modification [Bacillus
           amyloliquefaciens subsp. plantarum UCMB5036]
 gi|452079908|emb|CCP21666.1| enzyme for ms(2)i(6)A formation for tRNA modification [Bacillus
           amyloliquefaciens subsp. plantarum UCMB5036]
          Length = 509

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 195/371 (52%), Gaps = 16/371 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  T++ ++A++ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ KK      L V GC+ Q     +R LK+   V ++ G   I R+ E++ E     E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             + +  ++     +LPKVR  K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + ++G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS A+L  M R+Y    +  +V  +   +P   +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424

Query: 408 RELTSVFEAFT 418
           + L  + +  +
Sbjct: 425 QRLNDLVKEIS 435


>gi|323703565|ref|ZP_08115210.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531468|gb|EGB21362.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum
           nigrificans DSM 574]
          Length = 459

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 114/377 (30%), Positives = 199/377 (52%), Gaps = 25/377 (6%)

Query: 54  KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
           K  G +  ++ TFGC  N+ DSE +AG L   GY  T++ EEADI ++NTC V+  ++S 
Sbjct: 13  KSEGQKFYHVITFGCQMNERDSESLAGMLEDMGYLPTESREEADIIILNTCCVRETAESK 72

Query: 114 MDTLIAKCKSAK--KP---LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVE 163
           +  L+ + +  K  KP   + VAGC+ Q     K++      V I+ G   I  +  +++
Sbjct: 73  VFGLLGRLRQLKVAKPDLIIGVAGCMSQQEEVAKKIRHSFPFVDIIFGTHNIHELPRMIQ 132

Query: 164 ETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
           +  +  E  + +   +K  A ++P  R++K    + I  GC   CTYC   + RG   S 
Sbjct: 133 QVRENQEAVLEVWATEKGIAENVPVRRKDKLKAWVTIMYGCNNFCTYCIVPYVRGRERSR 192

Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN-----LPILLNAIVAELPPDGST 276
             E+++  ++ ++A G KEV L  ++  +YG+D+ ++     L + L+ I       G  
Sbjct: 193 NPENIIEEIKGLVAQGYKEVTLLGQNVNSYGKDLQMDYRFADLLLDLDKIT------GLK 246

Query: 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
            +R   ++P    + L ++       C +   H+P Q+GS+ +L  MNR YT   +  ++
Sbjct: 247 RIRFMTSHPRDFDQRLIDVIASTNKVCEH--FHLPAQAGSNRILKLMNRGYTREHYLQLI 304

Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396
           D + + +PG  I +DI+ GFPGET+EDF  T++L++  ++       +  R GTPAA+M+
Sbjct: 305 DNIRKAIPGASITSDIMVGFPGETEEDFADTLDLVRRVRYDSAFTFVYNIRSGTPAAKME 364

Query: 397 KVPSAVVKKRSRELTSV 413
           +VP  V   R ++L  +
Sbjct: 365 QVPEEVKSARIQKLIDL 381


>gi|314936546|ref|ZP_07843893.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
           subsp. hominis C80]
 gi|313655165|gb|EFS18910.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
           subsp. hominis C80]
          Length = 514

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 116/366 (31%), Positives = 191/366 (52%), Gaps = 16/366 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L A  Y  TD+  EAD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V ++ G   I ++ E++EE    K
Sbjct: 129 NLKHLKKNRPETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   + ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G KE+ L  ++  +YG+DI  +L   L  ++ ++       +R   ++P  
Sbjct: 249 EEVRELAREGYKEITLLGQNVNSYGKDIK-DLDYGLGDLLEDISNIDIPRVRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  + +   +   +H+PVQSG++AVL  M R+Y+   +  +VD + E +P + 
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNAVLKIMGRKYSRESYLDLVDRIKEAIPNVA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T++L  E +F   +   +  R GTPAA+MK  VP+ V K R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKDR 425

Query: 407 SRELTS 412
            + L  
Sbjct: 426 LQRLNK 431


>gi|429727800|ref|ZP_19262556.1| tRNA methylthiotransferase YqeV [Peptostreptococcus anaerobius VPI
           4330]
 gi|429151534|gb|EKX94398.1| tRNA methylthiotransferase YqeV [Peptostreptococcus anaerobius VPI
           4330]
          Length = 442

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 180/347 (51%), Gaps = 26/347 (7%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI--AKCK 122
           T GC  NQ ++E M       GY    + E AD+++INTCTV   S       I   K K
Sbjct: 8   TLGCKVNQYETEAMLEMFEKKGYTNVGSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKK 67

Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
           + K  + V GC  Q S  ++ E+E V++V G      +V+ +EE        L    KL 
Sbjct: 68  NPKSIIAVVGCYSQVSPEEILEIEDVNLVMGTNDRRTIVDRIEE--------LDSNSKLS 119

Query: 181 ALD-LPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
            +D + KVR  + +EI          + I  GC   CTYC   +ARG + S  ++ +   
Sbjct: 120 TVDDIMKVREFESIEISQNNGKTRAFIKIQDGCDRYCTYCIIPYARGRIRSRNIDDIREE 179

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + T+  +G KEV L+     +YG+D+  ++ IL + I A    DG   +R+    P    
Sbjct: 180 ITTLAKNGYKEVVLTGIHVASYGKDLKEDIGIL-DVIKAVNDIDGIERIRLSSVEPVLFT 238

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           +    I E+ +   +    H+ +QSG+D+ L  MNR YT ++++  VDTL + +  + + 
Sbjct: 239 DEF--IDEICKIDKLVPHFHLSLQSGTDSTLKRMNRRYTAAEYKRTVDTLRDRIKDVMLT 296

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396
           TD+I GFPGET+EDF++T+  +KE K   +H+ ++ PR GTPAA MK
Sbjct: 297 TDVIVGFPGETNEDFSETLRFLKEIKLMHMHVFKYSPRKGTPAASMK 343


>gi|415886653|ref|ZP_11548433.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           methanolicus MGA3]
 gi|387587340|gb|EIJ79663.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           methanolicus MGA3]
          Length = 514

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 194/371 (52%), Gaps = 16/371 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG     GY  TD  E+A++ L+NTC ++  +++ +   I  
Sbjct: 71  FYIRTYGCQMNEHDTEVMAGIFMGLGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 130

Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ K  KP   L V GC+ Q     ++ LK+ + V ++ G   I R+  ++ E     E
Sbjct: 131 LKALKMEKPDLLLGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPNILHEAYMSKE 190

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 191 MVVEVWSKEGDIIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A G KE+ L  ++  AYG+D   ++   L  ++ E+       +R   ++P   
Sbjct: 251 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYGLGDLMEEIRKIDIPRVRFTTSHPRDF 309

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  VL  M R+YT  ++  +V  +   +P + +
Sbjct: 310 DDHLIEV--LAKGGNLMPHIHLPVQSGSTDVLKIMARKYTREEYLELVRKIKAAIPDVAL 367

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII G+P ET+E F +T++L +E  F   +   + PR GTPAA+M+  VP  V K+R 
Sbjct: 368 TTDIIVGYPNETEEQFEETLSLYREVGFESAYTFIYSPREGTPAAKMQDNVPMEVKKERL 427

Query: 408 RELTSVFEAFT 418
           + L ++    +
Sbjct: 428 QRLNALVNELS 438


>gi|4104517|gb|AAD02057.1| unknown [Clostridium acetobutylicum DSM 1731]
          Length = 386

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 121/359 (33%), Positives = 188/359 (52%), Gaps = 14/359 (3%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  N  +SE MA +    G+ + DN E+AD ++INTCTV +        +I++ + A
Sbjct: 7   TLGCRVNSYESEAMAEKFIKSGWEIVDNDEKADAYVINTCTVTNMGDRKSRQMISRARKA 66

Query: 125 KKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQ----IDRVVEVVEETLKGHEVR-LLH 175
            K  V+A  GC  Q     + E+EGV IV G +     I  V + +EE  +   V+ +  
Sbjct: 67  NKDAVIAAVGCYSQVEPEKVAEIEGVDIVLGTKNKGDIIHYVNKFIEERNQIVNVKDVFT 126

Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
            KK   L++ + + +K    L I  GC   C+YC   +ARG + S   E ++G ++ +  
Sbjct: 127 DKKFEDLNIDEYQ-DKTRAFLKIQDGCNRFCSYCLIPYARGGVCSKNPEKVIGEIKRLAE 185

Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
            G KE+ LS     +YG D+  +   L++ I      DG   +RIG   P F  E     
Sbjct: 186 HGFKEIILSGIHIASYGDDLKGDWN-LISIIEKAEQIDGIERIRIGSIEPRFFDEDTISK 244

Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
            + ++  C +   H+ +QSG    L  MNR+YT  +++ +V  L E +  + I TD+I G
Sbjct: 245 IKNMKKMCPH--FHLSLQSGCTETLERMNRKYTAEEYKEIVYKLRENISDVSITTDVIVG 302

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK-KRSRELTSV 413
           FPGETDE+F +T + +KE +  ++H+ ++ PR GT AA MK   +  VK KRS EL  +
Sbjct: 303 FPGETDEEFEKTYDFLKEIELAKMHVFKYSPREGTKAAAMKNQINGNVKDKRSAELIEL 361


>gi|374708575|ref|ZP_09713009.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Sporolactobacillus inulinus CASD]
          Length = 494

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 122/369 (33%), Positives = 192/369 (52%), Gaps = 15/369 (4%)

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
           ++T+GC  N+ D+E MAG L   GY  TD+ + AD+ LINTC ++  +++ +   I   K
Sbjct: 54  IETYGCQMNEHDTEVMAGILEKMGYHETDDPKLADVILINTCAIRENAENKVFGHIGTLK 113

Query: 123 SAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
           + K  KP   L V GC+ Q     ++ L +   V ++ G   I R+ ++++E L   E  
Sbjct: 114 TLKLEKPGLILGVCGCMAQEEVVVNKILAKHPQVDLIFGTHNIHRLPQLLKEALFSKEMV 173

Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           V +  ++     +LP+ RR  F   + I  GC   CTYC   + RG   S   E +V  V
Sbjct: 174 VEVWSKEGDIVENLPQSRRGHFQAWVNIMYGCDKFCTYCIVPYTRGKERSRHPEEIVQEV 233

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           R +   G KE+ L  ++  AYG+D+       L  ++ E+   G   +R   ++P    +
Sbjct: 234 RELARQGYKEITLLGQNVNAYGKDLPDLENYGLGNLMDEIRQIGIPRVRFTTSHPKDFDD 293

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
           HL E+     + C +  +H+PVQSGS  +L  M R YT   +  +   + + VP     T
Sbjct: 294 HLIEVLAKGGNLCEH--IHLPVQSGSSDILKIMGRGYTRERYLELFHKIKDAVPNASFTT 351

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
           DII GFP ETDE F +T++L++E +F       + PR GTPAARMK  +P  V K+R + 
Sbjct: 352 DIIVGFPNETDEQFEETLSLVRECEFDGGFTFIYSPRAGTPAARMKDNIPMDVKKERLQR 411

Query: 410 LTSVFEAFT 418
           L  + + F+
Sbjct: 412 LNKLMDEFS 420


>gi|47568277|ref|ZP_00238980.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241]
 gi|47555105|gb|EAL13453.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241]
          Length = 509

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/366 (31%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V KKR 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKKRL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNAL 430


>gi|443478976|ref|ZP_21068653.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudanabaena biceps PCC
           7429]
 gi|443015642|gb|ELS30506.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudanabaena biceps PCC
           7429]
          Length = 453

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 130/392 (33%), Positives = 197/392 (50%), Gaps = 25/392 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   GY  T+ SEEAD+ L NTC+++  ++  + + + + 
Sbjct: 10  HIVTFGCQMNKADSERMAGVLEDMGYHSTEESEEADLILYNTCSIRDNAEQKVYSYLGRQ 69

Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K+      LVVAGCV Q  G   L+ +  + +V G Q ++R+  ++E+   G++V  
Sbjct: 70  AKRKRDNPNLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHVNRLGHLLEQVFNGNQVAA 129

Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
                +   D+   RRN  V   + I  GC   CTYC     RG   S T ES+   +  
Sbjct: 130 TEEAYIEE-DITTPRRNSSVAAWVNIIYGCNENCTYCIVPSVRGREQSRTPESIRQEIEK 188

Query: 233 VIADGVKEVWLSSEDTGAYGRDI-------GVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
           + A G KE+ L  ++  AYGRD+       GV   I    ++  +   +G   +R   ++
Sbjct: 189 LAAQGYKEITLLGQNIDAYGRDLPAGGIGAGVGGKITFTDLLYYVHDIEGIDRIRYATSH 248

Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           P +    L K  AE+   P +    H+P QSG + +L AM R YT   +R +++ + E++
Sbjct: 249 PRYFSSRLIKACAEL---PKICEHFHIPFQSGDNDILKAMARGYTHERYRRIIEDIREIM 305

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
           P   I  D I  FPGET+E F +TV L+ +  F  V+ + + PRPGTPAA      S  V
Sbjct: 306 PDAAITADAIVAFPGETEEQFERTVQLVNDIGFDLVNTAAYSPRPGTPAAVWDDQLSETV 365

Query: 404 KK-RSRELTSVF--EAFTPYLGMEGRVERIWI 432
           K  R + L  V    A        GR+E I I
Sbjct: 366 KSDRLQRLNHVVNQNAAERSQRYAGRIEEIMI 397


>gi|188585813|ref|YP_001917358.1| MiaB family RNA modification protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350500|gb|ACB84770.1| RNA modification enzyme, MiaB family [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 446

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 184/368 (50%), Gaps = 23/368 (6%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTD-NSEE---ADIWLINTCTVKSPSQSAMDTLIAK 120
           TFGC  NQ DSE +       G+ ++D N +E    D+ +INTCTV   +       I K
Sbjct: 11  TFGCKVNQYDSEALKELFQDRGFEISDWNPQELDNIDVAIINTCTVTHLADRKARQHIRK 70

Query: 121 CKSAKKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL--- 173
            K      V+A  GC PQ   + +K LEGV IV G++    +VE+VE+ L    +     
Sbjct: 71  LKRRNPNCVIAVTGCYPQTDPQTVKALEGVDIVHGIEDRSGLVELVEQALSKENIWQGAI 130

Query: 174 -LHRKKLPALDLPKVRRNKFVE------ILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
            LH  + P  +   ++   F +       L I  GC   C+YC   +ARGHL S   E +
Sbjct: 131 HLHDSR-PKGEFENLKIKNFKKHDRTRHFLKIQEGCDQFCSYCIIPYARGHLRSRPPEDV 189

Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
           +  ++  +++G KE+ L+  + GAYGR+   NLP L   +   +   G   +R+    P 
Sbjct: 190 ISEIKQAVSNGFKEIVLTGINLGAYGRE-NSNLPNLATLLDKIIHLKGDYRIRLSSCEPQ 248

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
            I   L E+       C +  LH+P+QSG + +L AMNR+Y+  D+R +V    E  P +
Sbjct: 249 EITIGLLELVTNSEKICKH--LHIPLQSGDNEILKAMNRDYSKEDYRKIVMAAREKSPSI 306

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
            I TDII GFPGE+   F  T   +K+  F  +HI Q+ PR  TPA     +V S   K 
Sbjct: 307 AITTDIIVGFPGESANHFRNTKEFVKKIGFSDIHIFQYSPRKNTPAQEFSDQVHSKEKKA 366

Query: 406 RSRELTSV 413
           RS+EL  +
Sbjct: 367 RSQELIEI 374


>gi|453052257|gb|EME99743.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           mobaraensis NBRC 13819 = DSM 40847]
          Length = 507

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 123/381 (32%), Positives = 194/381 (50%), Gaps = 17/381 (4%)

Query: 52  SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSEE--ADIWLINTCTVKS 108
           S  +P T+T  ++T+GC  N  DSE ++G L   GY    +N+ E  AD+ + NTC V+ 
Sbjct: 7   SHDVPSTKTYLIRTYGCQMNVHDSERLSGLLEDAGYVRAPENTTEGDADVVVFNTCAVRE 66

Query: 109 PSQSAMDTLIAKCKSAK--KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVE 160
            + + +   + +    K  +P   + V GC+ Q  RD  +K+   V +V G   I ++  
Sbjct: 67  NADNKLYGNLGRLAPMKTRRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPV 126

Query: 161 VVEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
           ++E      E ++   + L A    LP  R + +   + I+VGC   CT+C     RG  
Sbjct: 127 LLERARIQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKE 186

Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTML 278
                  ++  V  ++A+GV E+ L  ++  AYG DIG +       + A    +G   +
Sbjct: 187 KDRRPGDILAEVEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERV 245

Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
           R    +P    + +  IA +   P V   LH+P+QSGSD VL AM R Y    F  ++D 
Sbjct: 246 RFTSPHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERFLGIIDK 303

Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-K 397
           +   +P   I+TDII GFPGET+EDF QT+++++E +F Q    Q+  RPGTPAA M  +
Sbjct: 304 VRAAMPDAAISTDIIVGFPGETEEDFEQTMHVVREARFAQAFTFQYSKRPGTPAATMDGQ 363

Query: 398 VPSAVVKKRSRELTSVFEAFT 418
           +P  VV+ R   L  + E  +
Sbjct: 364 IPKEVVQARYERLVELQERIS 384


>gi|383786187|ref|YP_005470756.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Fervidobacterium pennivorans DSM 9078]
 gi|383109034|gb|AFG34637.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Fervidobacterium pennivorans DSM 9078]
          Length = 430

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 187/340 (55%), Gaps = 13/340 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +++ T+GC  N++D+E     L   G+ + D+ +EADI ++NTC V+  S+  + + I K
Sbjct: 3   VHIYTYGCQMNENDTEIAKQLLLDGGFEVVDSEDEADIVILNTCAVRKKSEDKVYSHIGK 62

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
            +   K + + GCV    ++     GVS ++G + I +V E V     G + ++     L
Sbjct: 63  LRKKGKRIGIMGCVADKEKENLFKRGVSFVIGTRAIAKVPEAVLNAKNGAK-QIYLDDTL 121

Query: 180 PALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
             +D  KV  R +K    + I  GC   CTYC   + RG   S  +ES++  VRT++  G
Sbjct: 122 DEIDYHKVETRSSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRPMESVLLEVRTLVEKG 181

Query: 238 VKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHLKE 294
            KE     ++  AYG+D+  G +L  LL    A++  DG   L    + P  F LE  + 
Sbjct: 182 YKEFTFLGQNVDAYGKDLNDGTSLAKLLRE-TAQI--DGVKRLWFLTSYPTDFSLEIPQA 238

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           + E   +P +   +H+PVQ GSD +L AMNR YT  ++  +++ +  +VP   I++DII 
Sbjct: 239 MVE---NPKIAKSIHLPVQHGSDKILRAMNRRYTREEYIDLINNIRNIVPDASISSDIIV 295

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394
           GFPGETDEDF  TV L+K+ KF +++++ + PR GT A +
Sbjct: 296 GFPGETDEDFEATVKLVKDIKFERLNLAIYSPREGTVAWK 335


>gi|138894823|ref|YP_001125276.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266336|gb|ABO66531.1| tRNA 2-methylthioadenosine synthase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 580

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 191/368 (51%), Gaps = 16/368 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  TD  E+A++ L+NTC ++  +++ +   +  
Sbjct: 139 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGELGY 198

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K  K       L V GC+ Q     ++ LK+ + V ++ G   I R+  ++ E     E
Sbjct: 199 LKPLKTTNPDLLLGVCGCMSQEEAVVNKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 258

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVR+      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 259 MVVEVWSKEGDVVENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 318

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 319 EVRQLAAQGYKEITLLGQNVNAYGKDFN-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 377

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+  + +   +   +H+PVQSGS  +L  M R+YT  ++  +V  +   +P + +
Sbjct: 378 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVAL 435

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA+M   VP  V K+R 
Sbjct: 436 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMNDNVPMEVKKERL 495

Query: 408 RELTSVFE 415
           + L ++ +
Sbjct: 496 QRLNALVQ 503


>gi|312143592|ref|YP_003995038.1| MiaB family RNA modification protein [Halanaerobium
           hydrogeniformans]
 gi|311904243|gb|ADQ14684.1| RNA modification enzyme, MiaB family [Halanaerobium
           hydrogeniformans]
          Length = 442

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 119/390 (30%), Positives = 200/390 (51%), Gaps = 30/390 (7%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T+GC  N+ DSE +AG L   GY  T+  E ADI L+NTCT++  ++  +   + + K  
Sbjct: 11  TYGCQMNEHDSEKLAGMLENIGYNNTNKLENADIVLLNTCTIRENAELKVFGKLGQLKEY 70

Query: 125 KKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE--VR 172
           K+      + + GC+ Q    ++E+         I G   I +V E++++  K  E  V 
Sbjct: 71  KRKNPDLIIGIGGCMMQLEEPVEEIYKKYRHVDLIFGTHNIHQVPELIKKIEKNRERVVE 130

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           +  +++    DLP  R ++    + I  GC   CTYC   + RG   S  +E+++     
Sbjct: 131 VWDQEEGLIPDLPSQRESEHSAWISIIQGCDNFCTYCIVPYVRGRERSRPLEAIIKEAEK 190

Query: 233 VIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           + A+GVKEV L  ++  +YG D+   ++ P+LL  +      D    +R   ++P    E
Sbjct: 191 LAAEGVKEVTLLGQNVNSYGNDLAEEIDFPLLLEELNK---VDSLARIRFMTSHPRDFSE 247

Query: 291 HL----KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
            L    K + +V +H      +H+P+QSGS+ +L  MNR Y+   +   V  +   +P  
Sbjct: 248 KLLLAIKNLEKVAKH------IHLPIQSGSNKILKEMNRGYSREYYIDTVKEIQNKMPEA 301

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKK 405
            I+TD I GFPGE+DEDF QT+ L+KE +F   +   + PR GTPAA R  ++   V K+
Sbjct: 302 AISTDFIVGFPGESDEDFEQTLKLVKELRFDMAYTFIYSPRSGTPAAKREDQIAEEVKKE 361

Query: 406 RSRELTSVFE--AFTPYLGMEGRVERIWIT 433
           R  +L  +    ++     + G++++I +T
Sbjct: 362 RLNKLMDIQNRISYQKNQKLIGKIQKILVT 391


>gi|308173664|ref|YP_003920369.1| tRNA modification protein [Bacillus amyloliquefaciens DSM 7]
 gi|384159316|ref|YP_005541389.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           amyloliquefaciens TA208]
 gi|384164249|ref|YP_005545628.1| AdoMet radical enzyme for tRNA modification [Bacillus
           amyloliquefaciens LL3]
 gi|384168363|ref|YP_005549741.1| (dimethylallyl)adenosine tRNA [Bacillus amyloliquefaciens XH7]
 gi|385264828|ref|ZP_10042915.1| MiaB [Bacillus sp. 5B6]
 gi|307606528|emb|CBI42899.1| putative conserved AdoMet radical enzyme for tRNA modification
           [Bacillus amyloliquefaciens DSM 7]
 gi|328553404|gb|AEB23896.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           amyloliquefaciens TA208]
 gi|328911804|gb|AEB63400.1| putative AdoMet radical enzyme for tRNA modification [Bacillus
           amyloliquefaciens LL3]
 gi|341827642|gb|AEK88893.1| (dimethylallyl)adenosine tRNA [Bacillus amyloliquefaciens XH7]
 gi|385149324|gb|EIF13261.1| MiaB [Bacillus sp. 5B6]
          Length = 509

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 195/371 (52%), Gaps = 16/371 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  T++ ++A++ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ KK      L V GC+ Q     +R LK+   V ++ G   I R+ E++ E     E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             + +  ++     +LPKVR  K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + ++G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DITYGLGDLMDELRKIDIPRIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS A+L  M R+Y    +  +V  +   +P   +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424

Query: 408 RELTSVFEAFT 418
           + L  + +  +
Sbjct: 425 QRLNDLVKEIS 435


>gi|251780327|ref|ZP_04823247.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243084642|gb|EES50532.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 434

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 193/360 (53%), Gaps = 16/360 (4%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  NQ ++E M  +    GY++TD  + AD+++INTCTV +        +I+K +  
Sbjct: 7   TLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIISKARRT 66

Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLKGHEVRLLH 175
               ++A  GC  Q    ++ ++EGV +V G +    +V  V     E+ ++     +L 
Sbjct: 67  NSNAIIAVVGCYSQIAPEEVSKIEGVDVVLGTRNKGDIVYFVNKARDEKAIQVSVNEVLK 126

Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
            K+   L++ + + +K    L I  GC   CT+C   +ARG   S   E ++  V+ +  
Sbjct: 127 NKEFEELNIEEYQ-DKTRAFLKIQDGCNRFCTFCLIPYARGATCSKKPEKVIEEVKKLAE 185

Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 294
            G KEV LS   T +YG D+G ++ ++  +++ ++   DG   +RIG   P F  + +  
Sbjct: 186 HGFKEVILSGIHTASYGVDLGTDVTLI--SLLEDIEKIDGIDRVRIGSIEPAFFTDEVIN 243

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
             + ++  C +   H+ +QSGSDA L  MNR YT  ++   V TL + +  + I TD+I 
Sbjct: 244 KIKNMKKLCPH--FHLSLQSGSDATLKRMNRRYTADEYAKTVQTLRDNIQDVSITTDLIV 301

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV 413
           GFPGET+++FN+T   +K+ K  +VH+ ++ PR GT AA M  ++   +  KRS+ L+ +
Sbjct: 302 GFPGETEDEFNETYEYLKKLKLTKVHLFKYSPRKGTKAAEMPNQIDGTIKDKRSKILSEL 361


>gi|389573169|ref|ZP_10163244.1| tRNA 2-methylthioadenine synthetase [Bacillus sp. M 2-6]
 gi|388426866|gb|EIL84676.1| tRNA 2-methylthioadenine synthetase [Bacillus sp. M 2-6]
          Length = 508

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/366 (31%), Positives = 195/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  T+++E+A++ L+NTC ++  +++ +   +  
Sbjct: 67  FYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGELGH 126

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ K+      L V GC+ Q     +R LK+   V ++ G   I R+ E++ E     E
Sbjct: 127 LKALKREKPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSECYLSKE 186

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             + +  ++     +LP+ R+ K    + I  GC   CTYC   + RG   S   + ++ 
Sbjct: 187 MVIEVWSKEGDVIENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQ 246

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 247 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 305

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS +VL  M R+Y    +  +V  + E +P   +
Sbjct: 306 DDHLIEV--LAKGGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRKIKEAMPNASL 363

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA MK  VP  V K+R 
Sbjct: 364 TTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREGTPAANMKDNVPMRVKKERL 423

Query: 408 RELTSV 413
           + L ++
Sbjct: 424 QRLNAL 429


>gi|428215096|ref|YP_007088240.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Oscillatoria acuminata PCC 6304]
 gi|428003477|gb|AFY84320.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Oscillatoria acuminata PCC 6304]
          Length = 452

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 132/402 (32%), Positives = 206/402 (51%), Gaps = 43/402 (10%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  +++  +AD+ L NTC+++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILENMGFQFSEDPNQADLILYNTCSIRDNAEHKVYSYLGRQ 68

Query: 122 KSAK--KP---LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
              K  +P   L+VAGCV Q       R + EL+ V  +G Q  +R+ +++E+   G++V
Sbjct: 69  AKRKLQQPNLTLIVAGCVAQQEGEALLRRVPELDMV--MGPQHANRLEDLLEQVFAGNQV 126

Query: 172 ---RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESL 226
                LH  +    D+ K RR   V    +NV  GC   CTYC     RG   S T E++
Sbjct: 127 VATEALHIME----DITKPRRESQVTAW-VNVIYGCNERCTYCIVPSVRGIEQSRTPEAI 181

Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTML 278
              +  +   G KEV L  ++  AYGRD+      G NL  L + +  V ++P  G   +
Sbjct: 182 RAEMEELGRQGYKEVTLLGQNIDAYGRDLPGTTPEGRNLHTLTDLLYFVHDVP--GIERI 239

Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
           R   ++P +  E L    + L  P V    H+P QSG + +L AM R YT   +R ++D 
Sbjct: 240 RFATSHPRYFTERLIRACQEL--PKVCEHFHIPFQSGDNDILKAMARGYTQEKYRRIIDM 297

Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 398
           +   +P   I+ D I GFPGET+E F  T+ L++E  F  ++ + + PRPGTPAA  +  
Sbjct: 298 IRHYMPDASISADAIVGFPGETEEQFENTLKLLEEISFDMLNTAAYSPRPGTPAAVWENQ 357

Query: 399 PSAVVK----KRSRELTSV--FEAFTPYLGMEGRVERIWITE 434
            S  VK    +R   L S+   E    YL   GR+E + + E
Sbjct: 358 LSEEVKSDRLQRLNHLVSIKAAERSQRYL---GRIEEVLVEE 396


>gi|321315467|ref|YP_004207754.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis BSn5]
 gi|386758424|ref|YP_006231640.1| tRNA-i(6)A37 methylthiotransferase [Bacillus sp. JS]
 gi|430758878|ref|YP_007209599.1| hypothetical protein A7A1_3386 [Bacillus subtilis subsp. subtilis
           str. BSP1]
 gi|320021741|gb|ADV96727.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis BSn5]
 gi|384931706|gb|AFI28384.1| tRNA-i(6)A37 methylthiotransferase [Bacillus sp. JS]
 gi|430023398|gb|AGA24004.1| Hypothetical protein YmcB [Bacillus subtilis subsp. subtilis str.
           BSP1]
          Length = 509

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 118/366 (32%), Positives = 193/366 (52%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  T++ ++A++ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ KK      L V GC+ Q     +R LK+   V ++ G   I R+ E++ E     E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVR  K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + ++G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+  + +   +   +H+PVQSGS  VL  M R+Y    +  +V  + E +P   +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNAL 430


>gi|15894568|ref|NP_347917.1| Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824]
 gi|337736504|ref|YP_004635951.1| Fe-S oxidoreductase [Clostridium acetobutylicum DSM 1731]
 gi|384458011|ref|YP_005670431.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018]
 gi|15024215|gb|AAK79257.1|AE007641_3 Fe-S oxidoreductases [Clostridium acetobutylicum ATCC 824]
 gi|325508700|gb|ADZ20336.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018]
 gi|336292009|gb|AEI33143.1| Fe-S oxidoreductase [Clostridium acetobutylicum DSM 1731]
          Length = 436

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 121/359 (33%), Positives = 188/359 (52%), Gaps = 14/359 (3%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  N  +SE MA +    G+ + DN E+AD ++INTCTV +        +I++ + A
Sbjct: 7   TLGCRVNSYESEAMAEKFIKSGWEIVDNDEKADAYVINTCTVTNMGDRKSRQMISRARKA 66

Query: 125 KKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQ----IDRVVEVVEETLKGHEVR-LLH 175
            K  V+A  GC  Q     + E+EGV IV G +     I  V + +EE  +   V+ +  
Sbjct: 67  NKDAVIAAVGCYSQVEPEKVAEIEGVDIVLGTKNKGDIIHYVNKFIEERNQIVNVKDVFT 126

Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
            KK   L++ + + +K    L I  GC   C+YC   +ARG + S   E ++G ++ +  
Sbjct: 127 DKKFEDLNIDEYQ-DKTRAFLKIQDGCNRFCSYCLIPYARGGVCSKNPEKVIGEIKRLAE 185

Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
            G KE+ LS     +YG D+  +   L++ I      DG   +RIG   P F  E     
Sbjct: 186 HGFKEIILSGIHIASYGDDLKGDWN-LISIIEKAEQIDGIERIRIGSIEPRFFDEDTISK 244

Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
            + ++  C +   H+ +QSG    L  MNR+YT  +++ +V  L E +  + I TD+I G
Sbjct: 245 IKNMKKMCPH--FHLSLQSGCTETLERMNRKYTAEEYKEIVYKLRENISDVSITTDVIVG 302

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK-KRSRELTSV 413
           FPGETDE+F +T + +KE +  ++H+ ++ PR GT AA MK   +  VK KRS EL  +
Sbjct: 303 FPGETDEEFEKTYDFLKEIELAKMHVFKYSPREGTKAAAMKNQINGNVKDKRSAELIEL 361


>gi|410729530|ref|ZP_11367607.1| MiaB-like tRNA modifying enzyme [Clostridium sp. Maddingley
           MBC34-26]
 gi|410595632|gb|EKQ50333.1| MiaB-like tRNA modifying enzyme [Clostridium sp. Maddingley
           MBC34-26]
          Length = 467

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 123/385 (31%), Positives = 192/385 (49%), Gaps = 21/385 (5%)

Query: 42  DNHLSKTGSLSPKIPGTET-----IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEA 96
           DN  +K   LS K P   T     +   T GC  N  ++E MA +    GY +TD +  A
Sbjct: 12  DNDKTKLEKLSNKEPAKNTEGKSLVAFATLGCRVNHYETEAMAEKFIREGYEVTDFNNFA 71

Query: 97  DIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GV 152
           D+++INTC+V + S      +I++ + A K  ++A  GC  Q    ++  +EGV +V G 
Sbjct: 72  DVYVINTCSVTNMSDKKSRQIISRARRANKNAIIAAVGCYSQVAPEEVSNIEGVDVVLGT 131

Query: 153 QQIDRVVEVVEETLKGHEVRL-----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 207
           +    +V  V +     + +L     L  K+   L++ + + +K    L I  GC   C 
Sbjct: 132 RNKGDIVYYVNKAKDEQKPQLMVGEVLKNKQFEELNIEEYQ-DKTRAFLKIQDGCNRFCA 190

Query: 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267
           YC   + RG   S   + ++  ++ +   G KE+ LS   T +YG D+  N+ ++   ++
Sbjct: 191 YCLIPYTRGTTCSKDPQKVLDEIKKLSEHGFKEIILSGIHTASYGVDLEGNITLI--TLL 248

Query: 268 AELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE 326
            E+   DG   +RIG   P F    + E    ++  C     H+ +QSG DA L  MNR 
Sbjct: 249 EEIEKMDGIERVRIGSIEPSFFTNEVIEKMRKMKKLCPQ--FHLSLQSGCDATLKRMNRR 306

Query: 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386
           YT  ++   V+ + E +    I TD+I GFPGETDE+F++T   +K+ K  + HI +F P
Sbjct: 307 YTAKEYEDAVNRIRENLKDASITTDVIVGFPGETDEEFSETYEYLKKLKLTKTHIFKFSP 366

Query: 387 RPGTPAARMKKVPSAVVK-KRSREL 410
           R GT AA M      VVK KRS+ L
Sbjct: 367 RKGTKAADMPNQVDGVVKDKRSKAL 391


>gi|334340539|ref|YP_004545519.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum ruminis
           DSM 2154]
 gi|334091893|gb|AEG60233.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum ruminis
           DSM 2154]
          Length = 449

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 192/362 (53%), Gaps = 17/362 (4%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA---KC 121
           TFGC  N+ DSE ++G L   GY+ T++ E+ADI ++NTC V+  ++S +  L+    K 
Sbjct: 12  TFGCQMNERDSESLSGMLEDLGYSPTESQEDADIIILNTCCVRETAESKVFGLLGRLRKR 71

Query: 122 KSAKKPLV--VAGCVPQGSRDLKELEG----VSIV----GVQQIDRVVEVVEETLKGHEV 171
           K+A   L+  V GC+ Q     K +      V ++     V ++ R+++ V+E  K   +
Sbjct: 72  KTANPNLIIGVCGCMTQQEDAAKRIRHSFPFVDLIFGTHNVHELPRMLQQVQEN-KEAVL 130

Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
            +   +K  A D+P  R++K    + I  GC   C+YC   + RG   S   E +   ++
Sbjct: 131 EIWTSEKGIAEDVPVRRKDKLKAWVTIMYGCNNFCSYCIVPYVRGRERSRKPEDIFKEIK 190

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
            ++ +G KEV L  ++  +YG+D+  N     + ++     +G   +R   ++P      
Sbjct: 191 ELVKEGYKEVTLLGQNVNSYGKDLE-NTYRFADLLLDLDQIEGLERIRFMTSHPRDFDRR 249

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           L ++    R  C +   H+PVQ+GS+ VL  MNR YT   +  ++  +   VPG  I  D
Sbjct: 250 LIQVIASCRKVCEH--YHLPVQAGSNRVLKQMNRGYTREHYLELIREIRRAVPGASITAD 307

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
           I+ GFPGET+EDF QT++L+++ +F       +  R GTPAA+M++VP A+  +R + L 
Sbjct: 308 IMVGFPGETEEDFEQTLDLVQQVRFDSAFTFIYNTRSGTPAAKMEQVPEAIKSERIQRLI 367

Query: 412 SV 413
            +
Sbjct: 368 EL 369


>gi|157692385|ref|YP_001486847.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           pumilus SAFR-032]
 gi|229890424|sp|A8FDH0.1|MIAB_BACP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|157681143|gb|ABV62287.1| tRNA 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032]
          Length = 508

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  T+++E+A++ L+NTC ++  +++ +   +  
Sbjct: 67  FYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGELGH 126

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ K+      L V GC+ Q     +R LK+   V ++ G   I R+ E++ E     E
Sbjct: 127 LKALKREKPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSECYLSKE 186

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             + +  ++     +LP+ R+ K    + I  GC   CTYC   + RG   S   + ++ 
Sbjct: 187 MVIEVWSKEGDVIENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQ 246

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 247 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 305

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS +VL  M R+Y    +  +V  + E +P   +
Sbjct: 306 DDHLIEV--LAKGGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRKIKEAMPNASL 363

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA+M+  VP  V K+R 
Sbjct: 364 TTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREGTPAAKMQDNVPMHVKKERL 423

Query: 408 RELTSV 413
           + L ++
Sbjct: 424 QRLNAL 429


>gi|402775944|ref|YP_006629888.1| tRNA modification protein [Bacillus subtilis QB928]
 gi|418033152|ref|ZP_12671629.1| hypothetical protein BSSC8_25730 [Bacillus subtilis subsp. subtilis
           str. SC-8]
 gi|351469300|gb|EHA29476.1| hypothetical protein BSSC8_25730 [Bacillus subtilis subsp. subtilis
           str. SC-8]
 gi|402481125|gb|AFQ57634.1| Enzyme for ms(2)i(6)A formation for tRNAmodification [Bacillus
           subtilis QB928]
          Length = 520

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 118/366 (32%), Positives = 193/366 (52%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  T++ ++A++ L+NTC ++  +++ +   +  
Sbjct: 79  FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 138

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ KK      L V GC+ Q     +R LK+   V ++ G   I R+ E++ E     E
Sbjct: 139 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 198

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVR  K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 199 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 258

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + ++G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 259 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 317

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+  + +   +   +H+PVQSGS  VL  M R+Y    +  +V  + E +P   +
Sbjct: 318 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASL 375

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA+MK  VP  V K+R 
Sbjct: 376 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 435

Query: 408 RELTSV 413
           + L ++
Sbjct: 436 QRLNAL 441


>gi|419718717|ref|ZP_14246023.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnoanaerobaculum
           saburreum F0468]
 gi|383305057|gb|EIC96436.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnoanaerobaculum
           saburreum F0468]
          Length = 475

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 114/384 (29%), Positives = 200/384 (52%), Gaps = 24/384 (6%)

Query: 43  NHLSKTGSLSP-KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101
           N +  TG++   K P  + +   TFGC  N  DSE ++G LS  GY    + E+AD+ L 
Sbjct: 21  NDIIHTGAIDRGKYPTYKVV---TFGCQMNARDSEKLSGILSGIGYTEAKSEEDADLVLF 77

Query: 102 NTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVG 151
           NTCTV+  +   +   + + K +K+      + + GC+ Q + ++++++        + G
Sbjct: 78  NTCTVRENANDRLYGRVGQLKKSKEKNPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFG 137

Query: 152 VQQIDRVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 209
              I ++ E++ + LK  +  V ++    +    LP  R+  F   + I  GC   C+YC
Sbjct: 138 THNIYKLAEILFDHLKTKKQIVDVMESADMIVEKLPNKRQYAFKSGVNITFGCNNFCSYC 197

Query: 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIV 267
              + RG   S   E +   ++ ++ADGVKEV L  ++  +YG+  D  +N  +LL+ + 
Sbjct: 198 IVPYVRGKERSRKPEEITDEIKGLVADGVKEVMLLGQNVNSYGKGLDEKINFAMLLDEVA 257

Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 327
                DG   LR    +P  + + + E+ +  +  C +  LH+P+QSGS A+L  MNR Y
Sbjct: 258 ---KIDGLERLRFMTPHPKDLSDEVIEVMKNNKKICKH--LHLPLQSGSSAILKKMNRVY 312

Query: 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
           T   +  +V  +   +P + + TDII GFPGET+EDF  T++++K+ ++       +  R
Sbjct: 313 TKESYLDLVKRIKAAIPDISLTTDIIVGFPGETEEDFLDTLDVVKQVRYDSAFTFIYSKR 372

Query: 388 PGTPAARMK-KVPSAVVKKRSREL 410
            GTPAA+M+ ++   ++K R   L
Sbjct: 373 SGTPAAKMEDQIDPDIIKDRFDRL 396


>gi|222100720|ref|YP_002535288.1| MiaB-like tRNA modifying enzyme [Thermotoga neapolitana DSM 4359]
 gi|221573110|gb|ACM23922.1| MiaB-like tRNA modifying enzyme [Thermotoga neapolitana DSM 4359]
          Length = 434

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 125/372 (33%), Positives = 200/372 (53%), Gaps = 26/372 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+ ++TFGC  NQ +SEYMA QL   GY +   + EA  ++IN+C V    +  +  L+ 
Sbjct: 3   TVRIETFGCKVNQYESEYMAEQLEKAGYTVLP-AGEASYYIINSCVVTQEVEKKVKRLVK 61

Query: 120 --KCKSAKKPLVVAGCVPQ-GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
             + K+    +++ GC  Q    + K+L    ++G+ +   +V+ +  +L G +  ++  
Sbjct: 62  SIRRKNRDAKIILTGCFAQLFPEEAKKLPVNMVLGISEKKNIVDHLL-SLNGEQKLVVSA 120

Query: 177 KKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRT 232
              P  +  KV+    ++    + +  GC   CTYC  + ARG  + S  +E        
Sbjct: 121 PDSPVYE--KVKGSFEDRTRAYIKVEDGCDNGCTYCAIRFARGTKVRSKPLELFKEEFEK 178

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
           ++  G KE+ ++  + G YG+DIG  L  LL  IV  +P  G   +R+   N   I +  
Sbjct: 179 MVIKGYKEIVITGVNLGKYGKDIGTTLVDLLK-IVEHVP--GDYRVRLSSLNVEDITD-- 233

Query: 293 KEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
            E+ EV R +P +   LH+ VQSGSD VL  M R Y+ SDF  VV+ L  + P   I TD
Sbjct: 234 -ELVEVFRDNPRLCPHLHISVQSGSDRVLKRMGRRYSSSDFLKVVEKLRSINPDFSITTD 292

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--------KKVPSAVV 403
           II GFPGETDEDF +TV L++E +F +VHI ++ PRPGTPA+          KK    ++
Sbjct: 293 IIVGFPGETDEDFLKTVKLLEEVEFSRVHIFRYSPRPGTPASTFSDAVPEHKKKERLNIL 352

Query: 404 KKRSRELTSVFE 415
           K++++E++  ++
Sbjct: 353 KEKAKEVSHRYK 364


>gi|448732069|ref|ZP_21714352.1| MiaB-like tRNA modifying enzyme [Halococcus salifodinae DSM 8989]
 gi|445805347|gb|EMA55570.1| MiaB-like tRNA modifying enzyme [Halococcus salifodinae DSM 8989]
          Length = 414

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 125/358 (34%), Positives = 199/358 (55%), Gaps = 23/358 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           + +++T+GC+ N+ +S  +  +L   G+   D  + AD+ ++NTCTV   +++ M +   
Sbjct: 3   SYHLETYGCTANRGESRAIERRLRDGGHHPVDGPKAADVAILNTCTVVETTETNMLSRAR 62

Query: 120 KCKSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
           + +S    LVV GC  + QG  +  +L+  ++ G  ++  VV      L G E       
Sbjct: 63  ELESETADLVVTGCMALAQGE-EFADLD-ATVCGWDEVPEVV------LNG-ECPTATPG 113

Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
             P LD         V ILPI  GC+  C+YC TKHA G + S  VE  V + R ++  G
Sbjct: 114 TEPILD-------GKVGILPIARGCMSDCSYCITKHATGKIDSPPVEENVEKARALVHAG 166

Query: 238 VKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
            KE+ ++ +DTG YG D G   L  LL+ I A    DG   +R+GM NP  +    +E+A
Sbjct: 167 AKEIRVTGQDTGVYGWDDGERKLHELLDRICA---IDGDFRVRVGMANPKGVHGIREELA 223

Query: 297 EVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
           +V   +  +Y+FLH PVQSGSD VL  M R++ + +FR VV+T  + +    +ATD I G
Sbjct: 224 DVFAANEKLYNFLHAPVQSGSDDVLGEMRRQHQVREFREVVETFDDRLDHWTLATDFITG 283

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           FP ETD D  ++++L++E +  ++++++F  RPGT AA MK +     K+RS  +T +
Sbjct: 284 FPTETDADHEESMDLLRETQPERINVTRFSKRPGTDAAEMKGLGGTKKKERSSAMTDL 341


>gi|152976138|ref|YP_001375655.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           cytotoxicus NVH 391-98]
 gi|229890423|sp|A7GRA2.1|MIAB_BACCN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|152024890|gb|ABS22660.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cytotoxicus NVH
           391-98]
          Length = 509

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 196/371 (52%), Gaps = 16/371 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +  GY  T  +E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFTTEDADVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 168
            K  K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +  K 
Sbjct: 128 LKPLKQKNPDLLIGVCGCMSQEESVVNKIMQKHQHVDMVFGTHNIHRLPYILKDAMFSKA 187

Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A+G KE+ L  ++  AYG+D   +L   L  ++ EL       +R   ++P   
Sbjct: 248 EVRHLAANGYKEITLLGQNVNAYGKDFD-DLEYGLGDLMDELRKIDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+YT   +  +V  + + +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYTREQYLELVRKIKKTIPNVVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F       + PR GTPAA+MK  +P  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAFTFIYSPREGTPAAKMKDNIPMEVKKERL 424

Query: 408 RELTSVFEAFT 418
           + L  +   F+
Sbjct: 425 QRLNELVNEFS 435


>gi|16078764|ref|NP_389583.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221309576|ref|ZP_03591423.1| hypothetical protein Bsubs1_09356 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313900|ref|ZP_03595705.1| hypothetical protein BsubsN3_09287 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318823|ref|ZP_03600117.1| hypothetical protein BsubsJ_09216 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323095|ref|ZP_03604389.1| hypothetical protein BsubsS_09327 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|452913965|ref|ZP_21962592.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis MB73/2]
 gi|6226482|sp|O31778.1|MIAB_BACSU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|2634073|emb|CAB13574.1| enzyme for ms(2)i(6)A formation for tRNA modification [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|407959107|dbj|BAM52347.1| (dimethylallyl)adenosine tRNAmethylthiotransferase [Synechocystis
           sp. PCC 6803]
 gi|407964684|dbj|BAM57923.1| (dimethylallyl)adenosine tRNAmethylthiotransferase [Bacillus
           subtilis BEST7003]
 gi|452116385|gb|EME06780.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis MB73/2]
          Length = 509

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 118/366 (32%), Positives = 193/366 (52%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  T++ ++A++ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ KK      L V GC+ Q     +R LK+   V ++ G   I R+ E++ E     E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVR  K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + ++G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+  + +   +   +H+PVQSGS  VL  M R+Y    +  +V  + E +P   +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNAL 430


>gi|449020016|dbj|BAM83418.1| 2-methylthioadenine synthetase [Cyanidioschyzon merolae strain 10D]
          Length = 707

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 133/420 (31%), Positives = 219/420 (52%), Gaps = 45/420 (10%)

Query: 47  KTGSLSPKI-----PGTET---IY-MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEAD 97
           ++G L P++     P + T   +Y ++TFGC  N +DSE MAG+L   GY  T +  EAD
Sbjct: 243 RSGELVPQLYARENPNSRTRRRLYNVQTFGCQMNLADSERMAGELERCGYRHTPDPYEAD 302

Query: 98  IWLINTCTVKSPSQSAMDTLIA---KCKSAKKP---LVVAGCVPQ--GSRDLKELEGVSI 149
           + L+NTC+++  ++  + + +    + K    P   L+VAGCV Q  G + L+ +  + +
Sbjct: 303 LILLNTCSIRDHAEQKVYSFLGPFVRMKEKSNPGLKLIVAGCVAQQEGVKMLRRIPALDL 362

Query: 150 V-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFV-EILPINVGCLGACT 207
           V G Q  +R+ +++E+   G++V       +   D+ K RR   V   + I+ GC   CT
Sbjct: 363 VMGPQYANRLADLLEDVENGNQVVATEPIHI-MEDISKPRRQSQVCAWVNISYGCNERCT 421

Query: 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNA 265
           YC   + RG   S +VES+V  V  +  +G +EV L  ++  AYGRD+   V    LL  
Sbjct: 422 YCVVPYTRGLEQSRSVESIVNEVVQLKNEGYREVTLLGQNIDAYGRDMRPRVTFAQLLRH 481

Query: 266 IVAELPPDGSTMLRIGMTNP----PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
           + A     G   +R    +P    P +++   E+      P +  + H+P Q+G D VL 
Sbjct: 482 VSA----TGIDRIRAITAHPRYWSPRVIQATAEL------PNIMPYFHIPFQAGDDEVLK 531

Query: 322 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
           AM R YT   +R +++ + E +P   I  D I GFPGET+E F +T+ L++  +   V+ 
Sbjct: 532 AMGRGYTAKRYRRIIEMIREYLPDAAITADAIVGFPGETEEQFQRTLELMEALQLDNVNT 591

Query: 382 SQFYPRPGTPAARMK-KVPSAVVKKRSRELTS----VFEAFTP-YLGMEGRVERIWITEI 435
           + + PRP TPAA  + +VP AV  +R   +      + +A +  YL   GR+E + + E+
Sbjct: 592 AAYSPRPFTPAASWENQVPEAVKMERLHRINELNMRIVDARSQRYL---GRIEEVLVEEV 648


>gi|340354922|ref|ZP_08677618.1| tRNA-I(6)A37 modification enzyme MiaB [Sporosarcina newyorkensis
           2681]
 gi|339622936|gb|EGQ27447.1| tRNA-I(6)A37 modification enzyme MiaB [Sporosarcina newyorkensis
           2681]
          Length = 515

 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 125/412 (30%), Positives = 203/412 (49%), Gaps = 29/412 (7%)

Query: 32  KYNKNKPRLHDNHLSKTGSLSPKIPGT---ETIYMKTFGCSHNQSDSEYMAGQLSAFGYA 88
           K  K +   HDN       +  +  G       Y++T+GC  N+ D+E MAG   A GY 
Sbjct: 44  KRGKEEVEYHDNF-----QIEQRFKGMGQGRKFYIRTYGCQMNEHDTEVMAGIFMALGYE 98

Query: 89  LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KP---LVVAGCVPQG----SR 139
            TD  ++AD+ L+NTC ++  +++ +   +   K  K  +P   + V GC+ Q     ++
Sbjct: 99  ATDTVKDADVILLNTCAIRENAENKVFGELGHLKPLKLERPDLLIGVCGCMSQEESVVNK 158

Query: 140 DLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEIL 196
            LK  + V ++ G   I R+  ++ E     E  + +  ++     +LPKVR  K    +
Sbjct: 159 ILKTYDQVDMIFGTHNIHRLPHILHEAYMSKEMVIEVWSKEGDVIENLPKVRHGKIKAWV 218

Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
            I  GC   CTYC   + RG   S   E ++  VR + A+G KE+ L  ++  AYG+D  
Sbjct: 219 NIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRQLAAEGYKEITLLGQNVNAYGKDFD 278

Query: 257 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 316
            ++   L  ++ +L       +R   ++P    +HL E+  + +   +   +H+PVQSGS
Sbjct: 279 -DITYRLGDLMDDLRKIDIPRIRFTTSHPRDFDDHLIEV--LAKGGNLVDHIHLPVQSGS 335

Query: 317 DAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376
             +L  M R+YT   +  +V+ +   +P   + TDII GFP ETDE F +T++L +E  F
Sbjct: 336 SDMLKIMARKYTRESYLELVNKIRTAIPTASLTTDIIVGFPNETDEQFEETMSLYREVGF 395

Query: 377 PQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF-----EAFTPYLG 422
                  +  R GTPAA+M+  VP  V K+R + L  +      EA  PY G
Sbjct: 396 DMAFTYIYSAREGTPAAKMQDNVPMEVKKERLQRLNKLVNDMSAEAMKPYKG 447


>gi|22298858|ref|NP_682105.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Thermosynechococcus elongatus BP-1]
 gi|81743104|sp|Q8DJB2.1|MIAB_THEEB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|22295039|dbj|BAC08867.1| tlr1315 [Thermosynechococcus elongatus BP-1]
          Length = 450

 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 125/386 (32%), Positives = 194/386 (50%), Gaps = 28/386 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           Y+ TFGC  N++DSE MAG L A G  L    +EAD+ L NTCT++  ++  + + + + 
Sbjct: 6   YITTFGCQMNKADSERMAGILEAMGLELAAEPDEADVLLYNTCTIRDNAEQKLYSYLGRQ 65

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K       L+VAGCV Q  G + L+ +  V +V G Q  +R+ E++E+   G +V  
Sbjct: 66  AKRKHQDPNLTLIVAGCVAQQEGEQLLRRVPEVDLVMGPQYANRLGELLEQVWNGSQVVA 125

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
               ++   D+ K RR+  V    +NV  GC   CTYC     RG   S   E++   + 
Sbjct: 126 TEPLQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPGVRGQEQSRRPEAIRAEIE 183

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
            + A G KEV L  ++  AYGRD+      G       + +       G   +R   ++P
Sbjct: 184 ELAAQGYKEVTLLGQNIDAYGRDLPGITPEGRRQHTFTDLLYYIHDVAGIERIRFATSHP 243

Query: 286 PFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
            +  E L +  AE+   P V    H+P QSG + +L AM R YT   +  +++T+   +P
Sbjct: 244 RYFTERLIRACAEL---PKVCKHFHIPFQSGDNEILKAMARGYTRERYLHIIETIRRYMP 300

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
              I+ D I GFPGET+E F +T++L+    F Q++ + + PRP TPAA  + +VP A+ 
Sbjct: 301 DAAISADAIVGFPGETEEQFQRTLDLVAAVGFDQLNTAAYSPRPNTPAATWENQVPEAIK 360

Query: 404 KKRSRELTSVFEAFT-----PYLGME 424
           + R + L  +           YLG E
Sbjct: 361 EDRLQRLNHLVAKIAGDRSQRYLGRE 386


>gi|336253288|ref|YP_004596395.1| MiaB-like tRNA modifying protein [Halopiger xanaduensis SH-6]
 gi|335337277|gb|AEH36516.1| MiaB-like tRNA modifying enzyme [Halopiger xanaduensis SH-6]
          Length = 417

 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 129/387 (33%), Positives = 201/387 (51%), Gaps = 25/387 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D  E AD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHYRVDGPEVADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
                 L + GC  + QG    +E     I G  Q+    EV E    G E         
Sbjct: 65  ADETADLFITGCMALAQG----EEFRAADIDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P LD         V ILPI  GC+  C+YC TK A G + S  VE  V + R +I  G K
Sbjct: 118 PILD-------GVVGILPIARGCMSNCSYCITKEATGKIDSPPVEENVEKARALIHAGAK 170

Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
           E+ ++ +DTG YG D G      L   + E+  +G   +R+GM NP  +    +E+AEV 
Sbjct: 171 EIRITGQDTGVYGWDTGERKLHELLERICEI--EGDFRVRVGMANPKGVHGIREELAEVF 228

Query: 300 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
             H  +Y FLH PVQSGSD VL  M R++ + ++  VV+T  + +    ++TD I GFP 
Sbjct: 229 AEHDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYVEVVETFDDRLDYWTLSTDFIVGFPT 288

Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----V 413
           ET+ D  Q++ L++E +  ++++++F  RPGT AA MK +   V K+RS+E++      V
Sbjct: 289 ETEHDHEQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSELKREIV 348

Query: 414 FEAFTPYLGMEGRVERIWITEIAADGI 440
            +A+   +G E R + + + E  AD +
Sbjct: 349 ADAYEDMVG-ERREDCLVVEEGTADSV 374


>gi|194014848|ref|ZP_03053465.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus pumilus ATCC
           7061]
 gi|194013874|gb|EDW23439.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus pumilus ATCC
           7061]
          Length = 508

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 195/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  T+++E+A++ L+NTC ++  +++ +   +  
Sbjct: 67  FYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGELGH 126

Query: 121 CKSAKKP-----LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ K+      L V GC+ Q      R LK+   V ++ G   I R+ E++ E     E
Sbjct: 127 LKALKREKPDLILGVCGCMSQEESVVKRILKKHPFVDLIFGTHNIHRLPELLSECYLSKE 186

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             + +  ++     +LP+ R+ K    + I  GC   CTYC   + RG   S   + ++ 
Sbjct: 187 MVIEVWSKEGDVIENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQ 246

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 247 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 305

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS +VL  M R+Y    +  +V  + E +P   +
Sbjct: 306 DDHLIEV--LAKGGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRKIKEAMPNASL 363

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA+M+  VP  V K+R 
Sbjct: 364 TTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREGTPAAKMQDNVPMHVKKERL 423

Query: 408 RELTSV 413
           + L ++
Sbjct: 424 QRLNAL 429


>gi|428775987|ref|YP_007167774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halothece sp. PCC 7418]
 gi|428690266|gb|AFZ43560.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halothece sp. PCC 7418]
          Length = 447

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 195/362 (53%), Gaps = 26/362 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
           ++ TFGC  N++DSE MAG L A GY   D+   AD+ + NTCT++  ++  + + +   
Sbjct: 10  HITTFGCQMNKADSERMAGILDAMGYQAEDDPYLADVVVYNTCTIRDNAEQKVYSYLGRQ 69

Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K KSA   L+VAGCV Q  G + L+ +  + +V G Q  +R+ +++E+  +G+++ +
Sbjct: 70  AKRKQKSADVTLIVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLGDLLEQVQEGNQI-V 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                    D+ K RR+  +    +NV  GC   C+YC   + RG   S T E++   + 
Sbjct: 129 ATEPIYIMEDITKPRRDSDITAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAIREEME 187

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMT 283
            +   G +EV L  ++  AYGRD+  + P          L   V ++P  G   +R   +
Sbjct: 188 ILAEQGYQEVTLLGQNIDAYGRDLPGSTPEGRHKHTFTDLLYYVHDVP--GIERIRFATS 245

Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
           +P +  E L +  AE+   P V    H+P QSG + VL AM+R YT   +R +VD +   
Sbjct: 246 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNEVLKAMSRGYTHEKYRRIVDKIRHY 302

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
           +P   I+ D I GFPGET+E F  T+ L+++ +F Q++ + + PRPGTP+A+ +   S  
Sbjct: 303 LPDAAISADAIVGFPGETEEQFQNTLRLVEDVEFDQLNTAAYSPRPGTPSAKWENQLSDE 362

Query: 403 VK 404
           VK
Sbjct: 363 VK 364


>gi|423395390|ref|ZP_17372591.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG2X1-1]
 gi|423406265|ref|ZP_17383414.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG2X1-3]
 gi|401654801|gb|EJS72340.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG2X1-1]
 gi|401660259|gb|EJS77741.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG2X1-3]
          Length = 450

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 131/394 (33%), Positives = 202/394 (51%), Gaps = 20/394 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  +++D+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+  DG   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--DGLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADG 439
             L  +            EG V  I   E   DG
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKDG 390


>gi|289423896|ref|ZP_06425689.1| conserved hypothetical protein [Peptostreptococcus anaerobius
           653-L]
 gi|289155673|gb|EFD04345.1| conserved hypothetical protein [Peptostreptococcus anaerobius
           653-L]
          Length = 442

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 180/347 (51%), Gaps = 26/347 (7%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI--AKCK 122
           T GC  NQ ++E M       GY    + E AD+++INTCTV   S       I   K K
Sbjct: 8   TLGCKVNQYETEAMLEMFEKKGYTNVGSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKK 67

Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
           + K  + V GC  Q S  ++ E+E V++V G      +V+ +EE        L    KL 
Sbjct: 68  NPKSIIAVVGCYSQVSPEEILEIEDVNLVMGTNDRRTIVDRIEE--------LDSNSKLS 119

Query: 181 ALD-LPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
            +D + KVR  + +EI          + I  GC   CTYC   +ARG + S  ++ +   
Sbjct: 120 TVDDIMKVREFESIEISQNNGKTRAFIKIQDGCDRYCTYCIIPYARGRIRSRNIDEIREE 179

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + T+  +G KEV L+     +YG+D+  ++ IL + I A    DG   +R+    P    
Sbjct: 180 IITLANNGYKEVVLTGIHVASYGKDLKEDIGIL-DVIKAVNDIDGIERIRLSSVEPVLFT 238

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           +    I E+ +   +    H+ +QSG+D+ L  MNR YT ++++  VDTL + +  + + 
Sbjct: 239 DEF--IDEICKIDKLVPHFHLSLQSGTDSTLKRMNRRYTAAEYKRTVDTLRDRIKDVMLT 296

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396
           TD+I GFPGET+EDF++T+  +KE K   +H+ ++ PR GTPAA MK
Sbjct: 297 TDVIVGFPGETNEDFSETLRFLKEIKLMHMHVFKYSPRKGTPAASMK 343


>gi|374327055|ref|YP_005085255.1| MiaB family RNA modification protein [Pyrobaculum sp. 1860]
 gi|356642324|gb|AET33003.1| RNA modification enzyme, MiaB family [Pyrobaculum sp. 1860]
          Length = 417

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 193/363 (53%), Gaps = 34/363 (9%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           Y++T+GC   ++D+E +  +L   G    D+  EAD+ LI TC V+   +      I + 
Sbjct: 5   YVETYGCWLAKADAEIIRQRL---GLTPVDSLREADVVLIYTCAVREDGEVRQLARIREL 61

Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE-ETLKGHEVRLLHRKKLP 180
            ++   L+VAGC       L  L   +I        ++   E E  +G E+++L R    
Sbjct: 62  AASGGRLIVAGC-------LARLRPYTIKSAAPHAELIYPGEVEGGRGREMKILPRYS-- 112

Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADG 237
                       +  +P+ VGCLG C +C TK  RG  G   S   + +V  V+  +  G
Sbjct: 113 ---------GGVIYTVPLQVGCLGNCAFCATKFTRGGAGYVKSADPDDVVRHVKEAVGRG 163

Query: 238 VKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
            +E++L+ +D   YG D+    G  LP +L  I+ E+  +G   +RIGM+ P    +   
Sbjct: 164 AREIFLTGQDVITYGFDMRWKPGWTLPDILERILKEV--EGEYRIRIGMSEPWVFEKFAD 221

Query: 294 EIAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IATD 351
            + +V++    VY + H+PVQSGSD VL AM R YT  ++R +V  +  ++     IATD
Sbjct: 222 RLLDVVKSDGRVYRYFHLPVQSGSDRVLKAMGRRYTADEYRELVRKIRRVLGETTFIATD 281

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSREL 410
           II GFPGE +EDF  TV L++E +F +VH+++F PRP T AA + ++VP A  K+RS+ L
Sbjct: 282 IIVGFPGEGEEDFWATVKLVEELQFDKVHVARFSPRPFTEAAVIPRQVPDADKKRRSKIL 341

Query: 411 TSV 413
           + +
Sbjct: 342 SEL 344


>gi|294496305|ref|YP_003542798.1| MiaB-like tRNA modifying enzyme [Methanohalophilus mahii DSM 5219]
 gi|292667304|gb|ADE37153.1| MiaB-like tRNA modifying enzyme [Methanohalophilus mahii DSM 5219]
          Length = 406

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 179/334 (53%), Gaps = 12/334 (3%)

Query: 85  FGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRD--LK 142
            G+ L  +  EA + + NTCTVK  ++  +   I +     + ++V GC+PQ   D  L+
Sbjct: 3   LGHRLV-SEREAKVIICNTCTVKDTTEQKILHKIKEWGLQGREVIVTGCMPQVQLDEILE 61

Query: 143 ELEGVSIVGVQQIDR---VVEVVEETLKGHEVR---LLHRKKLPALDLPKVRRNKFVEIL 196
               V ++G+  + +   ++  V E L+G+ +R   +        L++P+ R +  + I 
Sbjct: 62  NNPEVHVLGMNSLLKLGVILNRVHERLEGYSLRPMSVFEDSPEGLLNVPRKRFSPNIHIC 121

Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
            I+ GC   C+YC    ARG L S+  +S+V  +   + +G  EVWL+S+D   YG D  
Sbjct: 122 QISQGCNNRCSYCIVTLARGPLYSFDADSIVTDIEQAVYEGCSEVWLTSQDNAQYGMDKE 181

Query: 257 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 316
           ++LP LL  I A +P  G   +R+GM NP   L  L E+        VY  LH+P+QS S
Sbjct: 182 IHLPALLERITA-IP--GDFRVRVGMMNPASTLGILDELLRAYSSEKVYKVLHLPIQSAS 238

Query: 317 DAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376
           D +L  M R++T+     +V+      P   + TDII GFPGE +EDF  T++ I+ Y  
Sbjct: 239 DKILEKMRRKHTMEQANFIVEKFRNAFPESTLFTDIIVGFPGEDEEDFELTLDWIRTYHP 298

Query: 377 PQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 410
            +V+IS++ PRP T A + + + + +V +RS +L
Sbjct: 299 DKVNISRYTPRPHTEALQFRNIDTRIVVERSGKL 332


>gi|423612521|ref|ZP_17588382.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD107]
 gi|401246110|gb|EJR52462.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD107]
          Length = 450

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 131/394 (33%), Positives = 202/394 (51%), Gaps = 20/394 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  +++D+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADG 439
             L  +          G EG V  I   E   DG
Sbjct: 357 HRLIELSNQLAKEYASGFEGEVLEIIPEETFKDG 390


>gi|443632630|ref|ZP_21116809.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis subsp. inaquosorum KCTC 13429]
 gi|443347453|gb|ELS61511.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis subsp. inaquosorum KCTC 13429]
          Length = 509

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 193/366 (52%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  T++ ++A++ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ KK      L V GC+ Q     +R LK+   V ++ G   I R+ E++ E     E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             + +  ++     +LPKVR  K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + ++G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+  + +   +   +H+PVQSGS  VL  M R+Y    +  +V  + E +P   +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNAL 430


>gi|423418319|ref|ZP_17395408.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG3X2-1]
 gi|401106592|gb|EJQ14553.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG3X2-1]
          Length = 509

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 194/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   +    L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P    
Sbjct: 307 DDHLIEV--LGKAGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVF 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETISLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|42782856|ref|NP_980103.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           cereus ATCC 10987]
 gi|81409496|sp|Q732V4.1|MIAB_BACC1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|42738783|gb|AAS42711.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 509

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++EEAD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNAL 430


>gi|333978768|ref|YP_004516713.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Desulfotomaculum kuznetsovii DSM 6115]
 gi|333822249|gb|AEG14912.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Desulfotomaculum kuznetsovii DSM 6115]
          Length = 445

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/398 (31%), Positives = 209/398 (52%), Gaps = 23/398 (5%)

Query: 51  LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
           +  +IP  E I   TFGC  N  DSE +AG L + GY    ++ EAD+ L+NTC V+  +
Sbjct: 1   MKERIPTYEVI---TFGCQMNDHDSEVIAGMLESLGYEPAASTGEADVILVNTCCVRETA 57

Query: 111 QSAMDTLI---AKCKSAKKPLVV--AGCVPQG---SRDLKEL--EGVSIVGVQQIDRVVE 160
           ++ +  L+   A  K  K  L++  AGC+ Q    +R +K    +   I+G   + R+ E
Sbjct: 58  ENKIYGLLGRLAHLKDKKGDLIIGIAGCMTQQPGVARKIKNRFPQVDLILGTHNLHRLPE 117

Query: 161 VVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
           ++ +  +  E  + +  +      +LP  R ++    + I  GC   CTYC   + RG  
Sbjct: 118 LLLQARECRERVMEVWDQAGEIVENLPIRRASRVKAWVNITYGCNNFCTYCIVPYVRGRE 177

Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTM 277
            S   E ++  +R ++ +G +EV L  ++  +YG+D+ G      L A V ++P  G   
Sbjct: 178 RSRRPEDILNEIRQLVQEGYREVTLLGQNVNSYGKDLPGPTSFARLLAEVDQIP--GLWR 235

Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
           +R   ++P    + L  I  + R P V   +H+PVQ+GS+ +L  MNR Y    +  +V+
Sbjct: 236 IRFTTSHPRDFTQEL--IDTIARCPHVCEHIHLPVQAGSNRILKLMNRGYDRDYYLDLVE 293

Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-K 396
            +   +PG+ I TDI+ GFPGET+EDF QT++L++  +F       + PRPGTPAAR+ +
Sbjct: 294 RIRRAIPGVAITTDIMVGFPGETEEDFAQTMDLVERVRFDGAFTFVYNPRPGTPAARLPE 353

Query: 397 KVPSAVVKKRSRELTSVFEAFT--PYLGMEGRVERIWI 432
           +VP  +  +R ++L       T      + GRVE++ +
Sbjct: 354 QVPDGIKSERIQKLIERQNEITLAHNQALVGRVEQVLV 391


>gi|239617912|ref|YP_002941234.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239506743|gb|ACR80230.1| RNA modification enzyme, MiaB family [Kosmotoga olearia TBF 19.5.1]
          Length = 440

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/407 (29%), Positives = 206/407 (50%), Gaps = 45/407 (11%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I  +TFGC  N +D+E MAG L + GY + DN EEAD+ ++NTC V+  ++  +   + +
Sbjct: 3   IAFRTFGCQMNVNDTETMAGILKSNGYVIVDNEEEADVVIVNTCAVREKAEKKLYGKLGR 62

Query: 121 CKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHE-VR 172
            +S KK      + V+GCV +  ++  LK  E   + G + I RV E +E  +KG   V 
Sbjct: 63  LRSLKKKNRNLIIGVSGCVAEKEKEALLKREEVNFVFGTRSISRVNEFLERAIKGERFVE 122

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           L           P++R ++    + I  GC   C+YC   + RG   S ++E ++  V+ 
Sbjct: 123 LSDFIDEINSSTPRLRTSRHHAWVTIIYGCNKFCSYCIVPYTRGREKSRSMEDILNEVKR 182

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
           + + G +EV    ++  +YG+D+                 DGST+ +  +      +E +
Sbjct: 183 LASKGYREVTYLGQNVDSYGKDLA----------------DGSTLAK--LIRETLKIEQI 224

Query: 293 KEIAEVLRHPCVYS---------------FLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
           + I  +  +P  +S                +H+P+QSGS+ +L AMNR YT  ++  ++ 
Sbjct: 225 ERIWYLTSYPKDFSDELIDVIATSKRVSRSIHLPIQSGSNRILKAMNRGYTREEYLDLIR 284

Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK 397
            +   VP   I+TDII GFPGE+++D+ QT +L++E  F +V+++ + PR GT +A+  K
Sbjct: 285 RIRTKVPDASISTDIIVGFPGESEDDYLQTKSLLEEVIFERVNLAIYSPREGTISAKYMK 344

Query: 398 --VPSAVVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAADGI 440
             VP  +  +R +EL  + +     +  E  G+   I +     DG+
Sbjct: 345 DDVPHEIKVRRLQELLELQKCLNRKINSEYIGKTVEIIVEAKHKDGM 391


>gi|423604599|ref|ZP_17580492.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD102]
 gi|401245219|gb|EJR51577.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD102]
          Length = 509

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++EEAD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNAL 430


>gi|218437115|ref|YP_002375444.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
           PCC 7424]
 gi|229890508|sp|B7K993.1|MIAB_CYAP7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|218169843|gb|ACK68576.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7424]
          Length = 454

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/402 (32%), Positives = 209/402 (51%), Gaps = 41/402 (10%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   GY  +D+  EAD+ L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEDIGYQWSDDPNEADLVLYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAK--KP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K  KP   L+VAGCV Q  G + L+ +  + +V G Q  +R+ ++++E L G++V  
Sbjct: 69  AKRKHEKPDLTLIVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLQDLLQEVLAGNQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ K RR   V    +NV  GC   CTYC   + RG   S T +++   + 
Sbjct: 129 TEPIHI-VEDITKPRRESTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPQAIRAEMV 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
            +   G KE+ L  ++  AYGRD+      G +   L + +  V ++P  G   +R   +
Sbjct: 187 ELGQQGYKEITLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYYVNDVP--GIERIRFATS 244

Query: 284 NPPFILEHL----KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
           +P +  E L    KE+ +V  H       H+P QSG + +L AM R YT   +R ++D +
Sbjct: 245 HPRYFTERLIVACKELPKVCEH------FHIPFQSGDNDLLKAMKRGYTHERYRQIIDKI 298

Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 399
            E +P   I+ D I GFPGET+  F  T+ L+++  F Q++ + + PRPGTPAA      
Sbjct: 299 REYMPDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPAALWDNQL 358

Query: 400 SAVVK----KRSRELTSV--FEAFTPYLGMEGRVERIWITEI 435
           S  VK    +R   L ++   E    YL   GR+E + + ++
Sbjct: 359 SEEVKSDRLQRLNHLVAIKAAERSQRYL---GRIEEVLVEDV 397


>gi|206977875|ref|ZP_03238763.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus H3081.97]
 gi|217961193|ref|YP_002339761.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           cereus AH187]
 gi|222097218|ref|YP_002531275.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           cereus Q1]
 gi|229140413|ref|ZP_04268968.1| hypothetical protein bcere0013_35120 [Bacillus cereus BDRD-ST26]
 gi|229197883|ref|ZP_04324599.1| hypothetical protein bcere0001_34190 [Bacillus cereus m1293]
 gi|375285694|ref|YP_005106133.1| hypothetical protein BCN_3600 [Bacillus cereus NC7401]
 gi|384181582|ref|YP_005567344.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           thuringiensis serovar finitimus YBT-020]
 gi|423353474|ref|ZP_17331101.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus IS075]
 gi|423374431|ref|ZP_17351769.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus AND1407]
 gi|423567333|ref|ZP_17543580.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus MSX-A12]
 gi|423574621|ref|ZP_17550740.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus MSX-D12]
 gi|229890422|sp|B7HLA6.1|MIAB_BACC7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|206743875|gb|EDZ55294.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus H3081.97]
 gi|217064945|gb|ACJ79195.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH187]
 gi|221241276|gb|ACM13986.1| conserved hypothetical protein [Bacillus cereus Q1]
 gi|228585601|gb|EEK43703.1| hypothetical protein bcere0001_34190 [Bacillus cereus m1293]
 gi|228642974|gb|EEK99250.1| hypothetical protein bcere0013_35120 [Bacillus cereus BDRD-ST26]
 gi|324327666|gb|ADY22926.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           thuringiensis serovar finitimus YBT-020]
 gi|358354221|dbj|BAL19393.1| conserved hypothetical protein [Bacillus cereus NC7401]
 gi|401089287|gb|EJP97458.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus IS075]
 gi|401094343|gb|EJQ02425.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus AND1407]
 gi|401212146|gb|EJR18892.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus MSX-D12]
 gi|401214421|gb|EJR21151.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus MSX-A12]
          Length = 509

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++EEAD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNAL 430


>gi|421507314|ref|ZP_15954234.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           anthracis str. UR-1]
 gi|401822448|gb|EJT21598.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           anthracis str. UR-1]
          Length = 455

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 14  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 73

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 74  LKSLKRRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 133

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 134 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 193

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 194 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 252

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 253 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 310

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 311 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 370

Query: 408 RELTSV 413
           + L ++
Sbjct: 371 QRLNAL 376


>gi|302335738|ref|YP_003800945.1| MiaB family RNA modification protein [Olsenella uli DSM 7084]
 gi|301319578|gb|ADK68065.1| RNA modification enzyme, MiaB family [Olsenella uli DSM 7084]
          Length = 455

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 133/405 (32%), Positives = 197/405 (48%), Gaps = 34/405 (8%)

Query: 45  LSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC 104
           +++ G L  K     T +++TFGC  N  DSE +AG L   G       +EADI +  TC
Sbjct: 1   MARVGELVGK-----TYFVRTFGCQMNLHDSERVAGLLDDCGCVAVQGPDEADIVVFMTC 55

Query: 105 TVKSPSQSAMD------TLIAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQI 155
           +V+  + + +         + +  S ++ + V GC+ Q  G R  + +  V +V G   +
Sbjct: 56  SVREKADTHLFGEASNLVRLPRPPSGRRVVAVGGCIAQRDGDRLREHIPNVDVVFGTSAL 115

Query: 156 DRV----VEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKT 211
             V    VE +EE      V      +  + +LP  R   F   +PI  GC   CTYC  
Sbjct: 116 ASVPALLVEALEEGGGRVHVDTSEEGRGFSAELPSHREQDFHAWVPIMTGCDNFCTYCIV 175

Query: 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAE 269
            H RG   S   E +V     ++ADGV+E+ L  ++  +YGRD+        LL A+   
Sbjct: 176 PHVRGRERSRAFERVVDECARLVADGVREITLLGQNVNSYGRDLYGEPRFAELLQAV--- 232

Query: 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTL 329
               G   +R   +NP  +    + IA +   P V   LH+ VQSGS  +L AMNR YT 
Sbjct: 233 -GETGVERIRFTSSNPKDL--SAETIAAMAGTPNVMPHLHLAVQSGSTRILKAMNRSYTR 289

Query: 330 SDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
             +  V+  +   +PG+ ++TDII GFPGET+EDF  T++L++E  F   +   +  RPG
Sbjct: 290 EGYLDVIRDIKAAIPGIALSTDIIVGFPGETEEDFLDTLSLVEEVGFASAYTFIYSRRPG 349

Query: 390 TPAARM-KKVPSAVVKKRSRELTSVF-----EAFTPYLGMEGRVE 428
           TPAAR+    P  V++ R   L S+      EA  PY G   RVE
Sbjct: 350 TPAARITDDTPREVIQGRFDRLASLVERLAHEANVPYQG--SRVE 392


>gi|65321098|ref|ZP_00394057.1| COG0621: 2-methylthioadenine synthetase [Bacillus anthracis str.
           A2012]
          Length = 524

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 83  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 142

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 143 LKSLKRRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 202

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 203 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 262

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 263 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 321

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 322 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 379

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 380 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 439

Query: 408 RELTSV 413
           + L ++
Sbjct: 440 QRLNAL 445


>gi|229071269|ref|ZP_04204493.1| hypothetical protein bcere0025_34430 [Bacillus cereus F65185]
 gi|229081024|ref|ZP_04213537.1| hypothetical protein bcere0023_36650 [Bacillus cereus Rock4-2]
 gi|228702338|gb|EEL54811.1| hypothetical protein bcere0023_36650 [Bacillus cereus Rock4-2]
 gi|228711890|gb|EEL63841.1| hypothetical protein bcere0025_34430 [Bacillus cereus F65185]
          Length = 509

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 197/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMQVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|206972613|ref|ZP_03233555.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH1134]
 gi|229180049|ref|ZP_04307393.1| hypothetical protein bcere0005_33950 [Bacillus cereus 172560W]
 gi|229191897|ref|ZP_04318867.1| hypothetical protein bcere0002_35540 [Bacillus cereus ATCC 10876]
 gi|365159451|ref|ZP_09355631.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           sp. 7_6_55CFAA_CT2]
 gi|423412423|ref|ZP_17389543.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG3O-2]
 gi|423431792|ref|ZP_17408796.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG4O-1]
 gi|206732426|gb|EDZ49606.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH1134]
 gi|228591448|gb|EEK49297.1| hypothetical protein bcere0002_35540 [Bacillus cereus ATCC 10876]
 gi|228603258|gb|EEK60735.1| hypothetical protein bcere0005_33950 [Bacillus cereus 172560W]
 gi|363625163|gb|EHL76208.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           sp. 7_6_55CFAA_CT2]
 gi|401104491|gb|EJQ12468.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG3O-2]
 gi|401116548|gb|EJQ24386.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG4O-1]
          Length = 509

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 197/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|237735920|ref|ZP_04566401.1| 2-methylthioadenine synthetase [Mollicutes bacterium D7]
 gi|229381665|gb|EEO31756.1| 2-methylthioadenine synthetase [Coprobacillus sp. D7]
          Length = 428

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 191/362 (52%), Gaps = 16/362 (4%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T+   T GC  N  +S  M    +  GY   D  + AD+++INTCTV +   S    +I
Sbjct: 2   KTVAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKSRQMI 61

Query: 119 AKC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV--- 171
            K   K+ K  + V GC  Q +  +++++EGV +V G Q    +V+ V+E L+  E+   
Sbjct: 62  RKAIRKNPKATICVVGCYSQTAPEEIEKIEGVGVVLGTQYRSDIVKYVDEHLETGEMVIK 121

Query: 172 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
              +++ +K   L++ + +  +    L I  GC   CTYC   +ARG + S   ES++ +
Sbjct: 122 VDNVMNLRKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRQKESVLNQ 179

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
            + ++ +G  E+ L+   T  YG D+  +       +V  +   G   LRI       I 
Sbjct: 180 AQKLVDNGYVEIVLTGIHTAGYGEDL--DDYSFYELLVDLVKIKGLKRLRISSIETSQIS 237

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           + + ++  +  +  +   LHVP+Q+GSDA L  MNR+YT +++   ++ +   +P +   
Sbjct: 238 DEIIDL--IGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYLPNIAFT 295

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
           TD+I GFPGETDE+F +T N IK+  + ++H+  + PR  TPAA+MK +V   +  +R+ 
Sbjct: 296 TDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKDQVNDQIKHERAN 355

Query: 409 EL 410
            L
Sbjct: 356 RL 357


>gi|218234533|ref|YP_002368575.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           cereus B4264]
 gi|229890421|sp|B7HDP7.1|MIAB_BACC4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|218162490|gb|ACK62482.1| conserved hypothetical protein [Bacillus cereus B4264]
          Length = 509

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 197/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|331697733|ref|YP_004333972.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           [Pseudonocardia dioxanivorans CB1190]
 gi|326952422|gb|AEA26119.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Pseudonocardia dioxanivorans CB1190]
          Length = 490

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/396 (31%), Positives = 198/396 (50%), Gaps = 30/396 (7%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
           T +  ++T+GC  N  DSE MAG L + GY   + +++AD+ ++NTC V+  + + +   
Sbjct: 2   TRSYTIRTYGCQMNVHDSERMAGLLESAGYVRAEATDDADVVVLNTCAVRENADNKLYGN 61

Query: 118 IAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
           +     + A +P   + V GC+ Q  RD  + +   V +V G   +  +  ++E      
Sbjct: 62  LGHLAPRKAARPGMQIAVGGCLAQKDRDTIVAKAPWVDVVFGTHNVGALPTLLERARHNE 121

Query: 170 EVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              +  R+ L      LP  R + +   + I+VGC   CT+C     RG         ++
Sbjct: 122 RAEVEIRESLEVFPSTLPARRESAYAGWVSISVGCNNTCTFCIVPSLRGKERDRRPGDVL 181

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNP 285
             V  + ADGV EV L  ++  AYG + G       LL A       D   + R+  T+P
Sbjct: 182 AEVSALAADGVLEVTLLGQNVNAYGVEFGDREAFSKLLRAC-----GDVEGLERVRFTSP 236

Query: 286 PFILEHLKE-----IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
                H +E     IA +   P V   LH+P+QSGSD VL  M R Y  S F  ++D + 
Sbjct: 237 -----HPREFSSDVIAAMAETPNVCPQLHMPLQSGSDRVLREMRRSYRSSRFLAILDEVR 291

Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVP 399
             +P   I+TDII GFPGET+EDF  T+++++  +F Q    Q+ PRPGTPAA +  ++P
Sbjct: 292 GSIPDAAISTDIIVGFPGETEEDFRATLDVVERARFAQAFTFQYSPRPGTPAATLPDQLP 351

Query: 400 SAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWIT 433
            AVV++R   L  + E  ++     +EGRV  + ++
Sbjct: 352 KAVVQERYERLVELQERISWEQNRALEGRVVEVLVS 387


>gi|257056745|ref|YP_003134577.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Saccharomonospora viridis DSM 43017]
 gi|256586617|gb|ACU97750.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Saccharomonospora viridis
           DSM 43017]
          Length = 494

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 188/370 (50%), Gaps = 20/370 (5%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
           T T  ++TFGC  N  DSE +AGQL   GY+L    E+AD+ ++NTC V+  + + +   
Sbjct: 2   TRTYTIRTFGCQMNVHDSERLAGQLEEAGYSLAAEGEQADVVVLNTCAVRENADNKLYGH 61

Query: 118 IAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
           +   ++AK       + V GC+ Q  R   ++    V +V G   +  +  ++E      
Sbjct: 62  LGHLRAAKAANPGMQIAVGGCLAQKDRGEIVRRAPWVDVVFGTHNLGSLPVLLERARHNA 121

Query: 170 EVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           E ++   + L      LP  R + +   + I+VGC   CT+C     RG         ++
Sbjct: 122 EAQVEIVEALETFPSTLPARRESAYSGWVSISVGCNNTCTFCIVPSLRGKERDRRPGEIL 181

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNP 285
             V  ++A+GV EV L  ++  +YG + G       LL +  +    DG   +R    +P
Sbjct: 182 AEVEALVAEGVLEVTLLGQNVNSYGVEFGDRYAFGKLLRSCGS---IDGLERVRFTSPHP 238

Query: 286 P-FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
             F  + +  +AE    P V   LH+P+QSGSD VL AM R Y  + F +++D +   +P
Sbjct: 239 AAFTDDVIDAMAET---PNVCHQLHMPLQSGSDRVLKAMRRSYRSARFLSILDKVRAAMP 295

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVV 403
              I TDII GFPGET+EDF QT+ ++++ +F      Q+ PRPGTPAA M  +VP  VV
Sbjct: 296 DAAITTDIIVGFPGETEEDFQQTLEVVRQARFSSAFTFQYSPRPGTPAAEMPDQVPKEVV 355

Query: 404 KKRSRELTSV 413
           ++R   L  +
Sbjct: 356 QERYDRLVEL 365


>gi|228954049|ref|ZP_04116078.1| hypothetical protein bthur0006_34210 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|423425910|ref|ZP_17402941.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG3X2-2]
 gi|423503549|ref|ZP_17480141.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus HD73]
 gi|449090716|ref|YP_007423157.1| hypothetical protein HD73_4058 [Bacillus thuringiensis serovar
           kurstaki str. HD73]
 gi|228805615|gb|EEM52205.1| hypothetical protein bthur0006_34210 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|401110657|gb|EJQ18556.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG3X2-2]
 gi|402458903|gb|EJV90643.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus HD73]
 gi|449024473|gb|AGE79636.1| hypothetical protein HD73_4058 [Bacillus thuringiensis serovar
           kurstaki str. HD73]
          Length = 509

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 197/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|196034172|ref|ZP_03101582.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus W]
 gi|196044479|ref|ZP_03111714.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB108]
 gi|218904900|ref|YP_002452734.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           cereus AH820]
 gi|228916410|ref|ZP_04079977.1| hypothetical protein bthur0012_36250 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228928822|ref|ZP_04091854.1| hypothetical protein bthur0010_35140 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935069|ref|ZP_04097899.1| hypothetical protein bthur0009_35230 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228947493|ref|ZP_04109783.1| hypothetical protein bthur0007_36210 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229123286|ref|ZP_04252490.1| hypothetical protein bcere0016_35750 [Bacillus cereus 95/8201]
 gi|229186011|ref|ZP_04313181.1| hypothetical protein bcere0004_35580 [Bacillus cereus BGSC 6E1]
 gi|301055262|ref|YP_003793473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus biovar
           anthracis str. CI]
 gi|376267665|ref|YP_005120377.1| tRNA-i(6)A37 methylthiotransferase [Bacillus cereus F837/76]
 gi|423550478|ref|ZP_17526805.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus ISP3191]
 gi|229890419|sp|B7JJ50.1|MIAB_BACC0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229890697|sp|A0RHE4.2|MIAB_BACAH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|195993246|gb|EDX57204.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus W]
 gi|196024514|gb|EDX63186.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB108]
 gi|218534759|gb|ACK87157.1| conserved hypothetical protein [Bacillus cereus AH820]
 gi|228597430|gb|EEK55080.1| hypothetical protein bcere0004_35580 [Bacillus cereus BGSC 6E1]
 gi|228660062|gb|EEL15698.1| hypothetical protein bcere0016_35750 [Bacillus cereus 95/8201]
 gi|228812013|gb|EEM58344.1| hypothetical protein bthur0007_36210 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228824639|gb|EEM70441.1| hypothetical protein bthur0009_35230 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830629|gb|EEM76234.1| hypothetical protein bthur0010_35140 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228843213|gb|EEM88294.1| hypothetical protein bthur0012_36250 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300377431|gb|ADK06335.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus biovar
           anthracis str. CI]
 gi|364513465|gb|AEW56864.1| tRNA-i(6)A37 methylthiotransferase [Bacillus cereus F837/76]
 gi|401190094|gb|EJQ97144.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus ISP3191]
          Length = 509

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNAL 430


>gi|345005921|ref|YP_004808774.1| MiaB-like tRNA modifying enzyme [halophilic archaeon DL31]
 gi|344321547|gb|AEN06401.1| MiaB-like tRNA modifying enzyme [halophilic archaeon DL31]
          Length = 416

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/378 (30%), Positives = 193/378 (51%), Gaps = 42/378 (11%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +   L   G+   D  + AD+ ++N+CTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESRQIESALRDAGHYRVDGPKAADVAILNSCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
                 L+V GC+             ++   Q+ D           G + ++LH  ++P 
Sbjct: 65  AEETADLIVTGCM-------------ALAQGQEFDEA---------GLDAQVLHWDEVPE 102

Query: 182 LDL--------PKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                      P V    +  + ILPI  GC+  C+YC TK A G + S ++E  V + R
Sbjct: 103 AVTNGECPTPGPGVEPVLDGVIGILPIARGCMSNCSYCITKQATGRIDSPSIEENVEKAR 162

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
            ++  G KE+ ++ +DTG YG D G  +LP LL+ I      +G   +R+GM NP  I  
Sbjct: 163 ALVHAGAKELRVTGQDTGVYGWDDGERDLPELLDRICN---IEGEFRVRLGMANPGGIHG 219

Query: 291 HLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
             +E+A+V  R+  +Y+F+H PVQSGS+ VL  M R++ +  F  +++T    +    ++
Sbjct: 220 IREELADVFARNEKLYTFIHAPVQSGSNEVLEEMRRQHRVDKFLEIIETFDTKLDHWTLS 279

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 409
           TD I GFP ETD D  Q++ L +E +  +V+I++F  RPGT AA MK +     K RS+ 
Sbjct: 280 TDFIVGFPTETDADHEQSMALFRETRPEKVNITRFSKRPGTDAAEMKGLGGQTKKDRSKA 339

Query: 410 LTS-----VFEAFTPYLG 422
           ++      V EA+   +G
Sbjct: 340 MSELKHEIVAEAYEELIG 357


>gi|429736625|ref|ZP_19270517.1| tRNA methylthiotransferase YqeV [Selenomonas sp. oral taxon 138
           str. F0429]
 gi|429154646|gb|EKX97368.1| tRNA methylthiotransferase YqeV [Selenomonas sp. oral taxon 138
           str. F0429]
          Length = 439

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 192/374 (51%), Gaps = 28/374 (7%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
           G    +M T GC  NQ ++E M G   A GY +    E A++++INTC+V   S      
Sbjct: 7   GLRAAFM-TLGCKVNQFETETMEGLFRARGYEVVPFEERAEVYVINTCSVTHLSDRKSRQ 65

Query: 117 LIAKCKSAKKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH--- 169
           LI +         + V GC  Q    +++ LEGV +V G ++  R+V+ VEE L+     
Sbjct: 66  LIRRAARTNPSACIAVTGCYAQVAPEEIRALEGVRVVIGTKERARIVDYVEEALRADTGA 125

Query: 170 --------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
                   + R+   + +P   LP   R      L I  GC   CT+C   +ARG + S 
Sbjct: 126 IGTITDIMQARVF--EDIPLHSLPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSR 179

Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
            + ++   ++ +   G  EV L+    GAYG D+  + P L +A    L  +    LR+G
Sbjct: 180 ELSAVAREMKLLTEAGFHEVVLTGIHLGAYGIDLR-DRPTLADACRTALAEEDLRRLRLG 238

Query: 282 MTNPPFILEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
                  +E   E+ E++R  P   + LH+P+Q+GSD VL AMNR Y  + F T+++ + 
Sbjct: 239 SLES---VELSAELLELMRTEPRFAAHLHLPLQAGSDNVLRAMNRHYDTAAFATLLEDVR 295

Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVP 399
             VPG+ I+TDII GFPGET+EDF   ++ ++   F ++H+  + PR GTPAAR   +V 
Sbjct: 296 RAVPGVAISTDIIVGFPGETEEDFAAGLDFVRAMGFARMHVFPYSPRKGTPAARRSDQVL 355

Query: 400 SAVVKKRSRELTSV 413
             V K+R+  + ++
Sbjct: 356 PMVRKERAARMQAL 369


>gi|30263778|ref|NP_846155.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           anthracis str. Ames]
 gi|47529199|ref|YP_020548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49186622|ref|YP_029874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           anthracis str. Sterne]
 gi|165872391|ref|ZP_02217026.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167635860|ref|ZP_02394169.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|167639855|ref|ZP_02398124.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170687836|ref|ZP_02879050.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|170706889|ref|ZP_02897347.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|177652051|ref|ZP_02934597.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190568422|ref|ZP_03021329.1| conserved hypothetical protein [Bacillus anthracis str.
           Tsiankovskii-I]
 gi|227813320|ref|YP_002813329.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           anthracis str. CDC 684]
 gi|229602893|ref|YP_002868014.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           anthracis str. A0248]
 gi|254683519|ref|ZP_05147379.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           CNEVA-9066]
 gi|254722040|ref|ZP_05183829.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           A1055]
 gi|254735812|ref|ZP_05193518.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           Western North America USA6153]
 gi|254739662|ref|ZP_05197356.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           Kruger B]
 gi|254751058|ref|ZP_05203097.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           Vollum]
 gi|254759376|ref|ZP_05211401.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           Australia 94]
 gi|386737595|ref|YP_006210776.1| TRNA 2-methylthioadenosine synthase [Bacillus anthracis str. H9401]
 gi|421639527|ref|ZP_16080118.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           anthracis str. BF1]
 gi|81583703|sp|Q81WR0.1|MIAB_BACAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|30258422|gb|AAP27641.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|47504347|gb|AAT33023.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180549|gb|AAT55925.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|164711829|gb|EDR17371.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167512256|gb|EDR87633.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|167528817|gb|EDR91575.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170128307|gb|EDS97176.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|170668152|gb|EDT18901.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|172082420|gb|EDT67485.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190560426|gb|EDV14404.1| conserved hypothetical protein [Bacillus anthracis str.
           Tsiankovskii-I]
 gi|227004716|gb|ACP14459.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           CDC 684]
 gi|229267301|gb|ACQ48938.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
           A0248]
 gi|384387447|gb|AFH85108.1| TRNA 2-methylthioadenosine synthase [Bacillus anthracis str. H9401]
 gi|403393192|gb|EJY90437.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           anthracis str. BF1]
          Length = 509

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNAL 430


>gi|294791811|ref|ZP_06756959.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 6_1_27]
 gi|294793672|ref|ZP_06758809.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 3_1_44]
 gi|416999213|ref|ZP_11939882.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula
           ACS-068-V-Sch12]
 gi|294455242|gb|EFG23614.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 3_1_44]
 gi|294457041|gb|EFG25403.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 6_1_27]
 gi|333977366|gb|EGL78225.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula
           ACS-068-V-Sch12]
          Length = 437

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/385 (31%), Positives = 202/385 (52%), Gaps = 23/385 (5%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           ++ Y+ T+GC  N +DSE ++ QL + GY  T+N E AD+ L+NTC V+  +++ +   I
Sbjct: 2   KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61

Query: 119 AKCKSAK---KPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            + K  K   K L++A  GC+ Q ++    K    + IV G   I  + E++EE   GH 
Sbjct: 62  GELKRLKRNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQHGHT 121

Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            ++   +    LP L+        F   +PI  GC   CTYC   H RG   S  VE++V
Sbjct: 122 HQISVDMDNSVLPELEAKP--NGSFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
             V  +   G KE+ L  ++  +YG D   G +   L++A+   +P  G   +R   ++P
Sbjct: 180 KEVTDLGVKGFKEITLLGQNVNSYGLDFKDGTDFGTLIDALDG-IP--GIERIRYMTSHP 236

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             + + +  I  + R   + + LH+P+QSGS+ +L  MNR YT+  ++ ++    E +  
Sbjct: 237 QDMSKSM--IDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCREKIKD 294

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
           + + TDII GFPGET+EDF  T+ L+K+ ++   +   +  R GTPAA M  ++P  + +
Sbjct: 295 VVVTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQIPEEIKR 354

Query: 405 KRSRELTSVFEAFTPYLG--MEGRV 427
            R + L  V    +  L   MEG+V
Sbjct: 355 VRLQTLMDVQNEISYELNKPMEGQV 379


>gi|374626085|ref|ZP_09698499.1| MiaB-like tRNA modifying enzyme [Coprobacillus sp. 8_2_54BFAA]
 gi|373914611|gb|EHQ46426.1| MiaB-like tRNA modifying enzyme [Coprobacillus sp. 8_2_54BFAA]
          Length = 428

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 191/362 (52%), Gaps = 16/362 (4%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T+   T GC  N  +S  M    +  GY   D  + AD+++INTCTV +   S    +I
Sbjct: 2   KTVAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKSRQMI 61

Query: 119 AKC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV--- 171
            K   K+ K  + V GC  Q +  +++++EGV +V G Q    +V+ V+E L+  E+   
Sbjct: 62  RKAIRKNPKATICVVGCYSQTAPEEIEKIEGVGVVLGTQYRSDIVKYVDEHLETGEMVIK 121

Query: 172 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
              +++ +K   L++ + +  +    L I  GC   CTYC   +ARG + S   ES++ +
Sbjct: 122 VDNVMNLRKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRQKESVLNQ 179

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
            + ++ +G  E+ L+   T  YG D+  +       +V  +   G   LRI       I 
Sbjct: 180 AQRLVDNGYVEIVLTGIHTAGYGEDL--DDYSFYELLVDLVKIKGLKRLRISSIETSQIS 237

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           + + ++  +  +  +   LHVP+Q+GSDA L  MNR+YT +++   ++ +   +P +   
Sbjct: 238 DEIIDL--IGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYLPNIAFT 295

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
           TD+I GFPGETDE+F +T N IK+  + ++H+  + PR  TPAA+MK +V   +  +R+ 
Sbjct: 296 TDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKGQVNDQIKHERAN 355

Query: 409 EL 410
            L
Sbjct: 356 RL 357


>gi|118478993|ref|YP_896144.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           thuringiensis str. Al Hakam]
 gi|118418218|gb|ABK86637.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus thuringiensis
           str. Al Hakam]
          Length = 524

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 83  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 142

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 143 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 202

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 203 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 262

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 263 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 321

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 322 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 379

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 380 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 439

Query: 408 RELTSV 413
           + L ++
Sbjct: 440 QRLNAL 445


>gi|402556105|ref|YP_006597376.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           cereus FRI-35]
 gi|401797315|gb|AFQ11174.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           cereus FRI-35]
          Length = 509

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++EEAD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPDAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNAL 430


>gi|229018968|ref|ZP_04175810.1| hypothetical protein bcere0030_34820 [Bacillus cereus AH1273]
 gi|228742296|gb|EEL92454.1| hypothetical protein bcere0030_34820 [Bacillus cereus AH1273]
          Length = 509

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 194/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   +    L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P    
Sbjct: 307 DDHLIEV--LGKAGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVF 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|423437227|ref|ZP_17414208.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG4X12-1]
 gi|401120382|gb|EJQ28178.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG4X12-1]
          Length = 509

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 197/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|160903280|ref|YP_001568861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Petrotoga
           mobilis SJ95]
 gi|229890590|sp|A9BGV7.1|MIAB_PETMO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|160360924|gb|ABX32538.1| RNA modification enzyme, MiaB family [Petrotoga mobilis SJ95]
          Length = 439

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/364 (31%), Positives = 186/364 (51%), Gaps = 13/364 (3%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA- 119
            Y++TFGC  N ++SE MAG L   G+  T+N +EADI LIN+C V+  +++ M   I  
Sbjct: 3   FYIRTFGCQMNINESEIMAGLLKEEGFEWTENPKEADIILINSCAVREKAENKMYGAIGG 62

Query: 120 --KCKSAKKPLV--VAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
             K K   K L+  V GC  +  R+  L+  + +  V G + +  +  +V+  L G    
Sbjct: 63  YGKLKDENKNLILGVGGCSAEKERENLLERFKNIDFVFGTRNVVDIGNLVKRALNGKRFA 122

Query: 173 LLHRK-KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
               K      D+PK+  +K    + I  GC   C+YC   + RG   S  +E ++  V 
Sbjct: 123 DFSDKLNDVNYDIPKMPISKHHAWITIIYGCNKYCSYCIVPYTRGFEKSRPMEDIIREVE 182

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
           +    G KE+    ++  +YG+D G     L   I      D    +    + P  I + 
Sbjct: 183 SYAKKGYKEITFLGQNVDSYGKDFGDKKSKLDLLIQKAAEFDSIKRIWFLTSYPSDITDS 242

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           L  I  V       ++ H+P QSGS+ +L AMNR+YT  +F  +V+ + + V  + +++D
Sbjct: 243 L--IQTVANEEKAANYFHLPAQSGSNKILKAMNRKYTREEFIELVNKVKKEVANVTVSSD 300

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRE 409
            I GFP ETDEDF +TV+LIK+ +F +++I+++ PR GT A + +   VP  +  KR + 
Sbjct: 301 FITGFPSETDEDFEETVDLIKQCRFERINIAEYSPREGTIAYKYQNDDVPKHIKNKRLQY 360

Query: 410 LTSV 413
           L  +
Sbjct: 361 LMEL 364


>gi|21224132|ref|NP_629911.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           coelicolor A3(2)]
 gi|81344644|sp|O69963.1|MIAB_STRCO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|2995295|emb|CAA18324.1| conserved hypothetical protein SC4H2.08 [Streptomyces coelicolor
           A3(2)]
          Length = 505

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/375 (32%), Positives = 190/375 (50%), Gaps = 16/375 (4%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQSAM 114
           GT T  ++T+GC  N  DSE ++G L   GY  A      +AD+ + NTC V+  + + +
Sbjct: 12  GTRTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVRENADNKL 71

Query: 115 DTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL 166
              +     K A +P   + V GC+ Q  RD  +K    V +V G   I ++  ++E   
Sbjct: 72  YGNLGHLAPKKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERAR 131

Query: 167 KGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
              E ++   + L A    LP  R + +   + I+VGC   CT+C     RG        
Sbjct: 132 VQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPG 191

Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
            ++  V  ++A+GV E+ L  ++  AYG DIG +       + A    DG   +R    +
Sbjct: 192 DILAEVEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGNIDGLERVRFTSPH 250

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           P    + +  IA +   P     LH+P+QSGSD VL AM R Y    +  +++ +   +P
Sbjct: 251 PRDFTDDV--IAAMAETPNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKVRAAIP 308

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
              I TDII GFPGET+EDF QT+++++E +F Q    Q+  RPGTPAA M+ ++P AVV
Sbjct: 309 HAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMENQIPKAVV 368

Query: 404 KKRSRELTSVFEAFT 418
           ++R   L ++ E  +
Sbjct: 369 QERYERLVALQEEIS 383


>gi|365830337|ref|ZP_09371918.1| MiaB-like tRNA modifying enzyme [Coprobacillus sp. 3_3_56FAA]
 gi|365263441|gb|EHM93274.1| MiaB-like tRNA modifying enzyme [Coprobacillus sp. 3_3_56FAA]
          Length = 428

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 191/362 (52%), Gaps = 16/362 (4%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T+   T GC  N  +S  M    +  GY   D  + AD+++INTCTV +   S    +I
Sbjct: 2   KTVAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKSRQMI 61

Query: 119 AKC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV--- 171
            K   K+ K  + V GC  Q +  +++++EGV +V G Q    +V+ V+E L+  E+   
Sbjct: 62  RKAIRKNPKATICVVGCYSQTAPEEIEKIEGVGVVLGTQYRSDIVKYVDEHLETGEMVIK 121

Query: 172 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
              +++ +K   L++ + +  +    L I  GC   CTYC   +ARG + S   ES++ +
Sbjct: 122 VDNVMNLRKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRQKESVLNQ 179

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
            + ++ +G  E+ L+   T  YG D+  +       +V  +   G   LRI       I 
Sbjct: 180 AQRLVDNGYVEIVLTGIHTAGYGEDL--DDYSFYELLVDLVKIKGLKRLRISSIETSQIS 237

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           + + ++  +  +  +   LHVP+Q+GSDA L  MNR+YT +++   ++ +   +P +   
Sbjct: 238 DEIIDL--IGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYLPNIAFT 295

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
           TD+I GFPGETDE+F +T N IK+  + ++H+  + PR  TPAA+MK +V   +  +R+ 
Sbjct: 296 TDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKDQVNDQIKHERAN 355

Query: 409 EL 410
            L
Sbjct: 356 RL 357


>gi|229162708|ref|ZP_04290665.1| hypothetical protein bcere0009_34780 [Bacillus cereus R309803]
 gi|228620590|gb|EEK77459.1| hypothetical protein bcere0009_34780 [Bacillus cereus R309803]
          Length = 509

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 195/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   +    L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|423401401|ref|ZP_17378574.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG2X1-2]
 gi|423477894|ref|ZP_17454609.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG6X1-1]
 gi|401654391|gb|EJS71934.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG2X1-2]
 gi|402428819|gb|EJV60911.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG6X1-1]
          Length = 509

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 194/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   +    L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P    
Sbjct: 307 DDHLIEV--LGKAGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVF 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|315651392|ref|ZP_07904417.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnoanaerobaculum
           saburreum DSM 3986]
 gi|315486351|gb|EFU76708.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnoanaerobaculum
           saburreum DSM 3986]
          Length = 485

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/384 (29%), Positives = 199/384 (51%), Gaps = 24/384 (6%)

Query: 43  NHLSKTGSLSP-KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101
           N +  TG++   K P  + +   TFGC  N  DSE ++G LS  GY    + E+AD+ L 
Sbjct: 31  NDIIHTGAIDRGKYPTYKVV---TFGCQMNARDSEKLSGILSGIGYTEAKSEEDADLVLF 87

Query: 102 NTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVG 151
           NTCTV+  +   +   + + K +K+      + + GC+ Q + ++++++        + G
Sbjct: 88  NTCTVRENANDRLYGRVGQLKKSKEKNPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFG 147

Query: 152 VQQIDRVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 209
              I ++ E++ + LK  +  V ++    +    LP  R+  F   + I  GC   C+YC
Sbjct: 148 THNIYKLAEILFDHLKTKKQIVDVMESADMIVEKLPNKRQYAFKSGVNITFGCNNFCSYC 207

Query: 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIV 267
              + RG   S   E +   ++ ++ADGVKEV L  ++  +YG+  D   N  +LL+ + 
Sbjct: 208 IVPYVRGKERSRKPEEITDEIKGLVADGVKEVMLLGQNVNSYGKGLDEKTNFAMLLDEVA 267

Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 327
                DG   LR    +P  + + + E+ +  +  C +  LH+P+QSGS A+L  MNR Y
Sbjct: 268 ---KIDGLERLRFMTPHPKDLSDEVIEVMKNNKKICKH--LHLPLQSGSSAILKKMNRVY 322

Query: 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
           T   +  +V  +   +P + + TDII GFPGET+EDF  T++++K+ ++       +  R
Sbjct: 323 TKESYLDLVKRIKAAIPDISLTTDIIVGFPGETEEDFLDTLDVVKQVRYDSAFTFIYSKR 382

Query: 388 PGTPAARM-KKVPSAVVKKRSREL 410
            GTPAA+M +++   ++K R   L
Sbjct: 383 SGTPAAKMEEQIDPDIIKDRFDRL 406


>gi|228986916|ref|ZP_04147043.1| hypothetical protein bthur0001_35910 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229157351|ref|ZP_04285429.1| hypothetical protein bcere0010_35340 [Bacillus cereus ATCC 4342]
 gi|228626078|gb|EEK82827.1| hypothetical protein bcere0010_35340 [Bacillus cereus ATCC 4342]
 gi|228772865|gb|EEM21304.1| hypothetical protein bthur0001_35910 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 509

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNAL 430


>gi|75909246|ref|YP_323542.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anabaena
           variabilis ATCC 29413]
 gi|123758760|sp|Q3M8N9.1|MIAB_ANAVT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|75702971|gb|ABA22647.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anabaena variabilis ATCC
           29413]
          Length = 454

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/396 (32%), Positives = 202/396 (51%), Gaps = 31/396 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  +++   AD+ L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEDMGFEFSEDPNNADVILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K       LVVAGCV Q  G   L+ +  + +V G Q  +R+ +++E    G++V  
Sbjct: 69  AKRKHEQPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ + RR+  V    +NV  GC   CTYC   + RG   S T E++   + 
Sbjct: 129 TEAVHIME-DITQARRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAVRAEME 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
            +   G KE+ L  ++  AYGRD+      G +L    + +  V ++P  G   +R   +
Sbjct: 187 ELGRQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTFTDLLYYVHDVP--GIERIRFATS 244

Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
           +P +  E L K  AE+   P V    H+P QSG + +L AM R YT   +R ++DT+   
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNQLLKAMARGYTQEKYRRIIDTIRRY 301

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
           +P   I+ D I GFPGET+E F  T+ L+ +  F Q++ + + PRPGTPAA  +   S  
Sbjct: 302 MPDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWENQLSEE 361

Query: 403 VK----KRSRELTSVFEAFTPYLGMEGRVERIWITE 434
            K    +R   L +V  A      M GR+E + + E
Sbjct: 362 TKSDRLQRLNHLVNVKAAERSQRYM-GRIEEVLVEE 396


>gi|30021864|ref|NP_833495.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           cereus ATCC 14579]
 gi|81432671|sp|Q812Y0.1|MIAB_BACCR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|29897420|gb|AAP10696.1| tRNA 2-methylthioadenosine synthase [Bacillus cereus ATCC 14579]
          Length = 509

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDFLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|359148544|ref|ZP_09181685.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           sp. S4]
          Length = 513

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/394 (31%), Positives = 198/394 (50%), Gaps = 19/394 (4%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSEE--ADIWLINTCTVKSPSQSA 113
           G +T  ++T+GC  N  DSE +AG L   GY  + + +EE  AD+ + NTC V+  + + 
Sbjct: 20  GVKTYEVRTYGCQMNVHDSERLAGLLEGAGYVRSPEGTEEGDADVVVFNTCAVRENADNR 79

Query: 114 MDTLIAKCK--SAKKP---LVVAGCVPQGSRDL--KELEGVSIV-GVQQIDRVVEVVEET 165
           +   + +      K+P   + V GC+ Q  RD   K    V +V G   I ++  ++E  
Sbjct: 80  LYGNLGRLAPMKTKRPGMQIAVGGCLAQKDRDTITKRAPWVDVVFGTHNIGKLPVLLERA 139

Query: 166 LKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
               E ++   + L A    LP  R + +   + ++VGC   CT+C     RG       
Sbjct: 140 RVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSVSVGCNNTCTFCIVPALRGKEKDRRT 199

Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
             ++  V  ++A+GV E+ L  ++  AYG DIG +       + A    +G   +R    
Sbjct: 200 GDILAEVEALVAEGVSEITLLGQNVNAYGSDIG-DRQAFSKLLRACGKIEGLERVRFTSP 258

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           +P    + +  IA +   P V   LH+P+QSGSD VL AM R Y    F ++++ +   +
Sbjct: 259 HPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQERFLSIIEKVRAAI 316

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402
           P   I TDII GFPGET+EDF QT++ ++E +F Q    Q+  RPGTPAA M  ++P  V
Sbjct: 317 PEAAITTDIIVGFPGETEEDFQQTLHTVREARFAQAFTFQYSKRPGTPAAEMDGQIPKEV 376

Query: 403 VKKRSRELTSVFE--AFTPYLGMEGRVERIWITE 434
           V++R   L ++ E  ++       GRV  + + E
Sbjct: 377 VQERYMRLVALQEEISWEENKKQTGRVLEVMVAE 410


>gi|423649637|ref|ZP_17625207.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD169]
 gi|401282917|gb|EJR88814.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD169]
          Length = 509

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|423582518|ref|ZP_17558629.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD014]
 gi|401213397|gb|EJR20138.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD014]
          Length = 450

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/394 (33%), Positives = 202/394 (51%), Gaps = 20/394 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADG 439
             L  +          G EG V  I   E   +G
Sbjct: 357 HRLIELSNQLAKEYASGFEGEVLEIIPEEQFKEG 390


>gi|228959979|ref|ZP_04121644.1| hypothetical protein bthur0005_34510 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|423628853|ref|ZP_17604602.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD154]
 gi|228799722|gb|EEM46674.1| hypothetical protein bthur0005_34510 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|401268398|gb|EJR74446.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD154]
          Length = 509

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|365840341|ref|ZP_09381533.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaeroglobus geminatus
           F0357]
 gi|364561545|gb|EHM39437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaeroglobus geminatus
           F0357]
          Length = 448

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/378 (33%), Positives = 195/378 (51%), Gaps = 23/378 (6%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T+GC  N SDSE  AGQL   GY +T+++E AD+ L+NTC V+  ++  +   I + K  
Sbjct: 13  TYGCQMNSSDSERYAGQLEELGYTMTEDAELADVILMNTCCVRETAEDKVLGKIGEFKHL 72

Query: 125 KKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEE--TLKGHEVRLL 174
           K       + V GC+ Q    R  K    + +V G   I +++++++E    +GH +   
Sbjct: 73  KARNNDLIIAVTGCMAQEWQERLFKRAPHLDLVIGTHNIHKLIDLIKEREEKRGHALATD 132

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
               +   D+P  R  KF   +PI  GC   CTYC   + RG   S  +E +V  VR + 
Sbjct: 133 MDGNV-FYDIPTRRFQKFFAWVPIMNGCNKFCTYCIVPYVRGREVSRPLEEIVEEVRNLA 191

Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEH 291
            +G KE+ L  ++  +YG D   G +   LL A V E+  DG   +R   ++P       
Sbjct: 192 DEGYKEITLLGQNVNSYGLDFKDGTDFSALLYA-VEEI--DGIERVRYMTSHPKDMTFAM 248

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           +  IA+  +   V + LH+PVQSGS  +L  MNR Y+   +  +++ + E +P + + TD
Sbjct: 249 VDAIAQCSK---VVTHLHLPVQSGSTELLKKMNRGYSAEHYLELIEYVREKIPDVALTTD 305

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSREL 410
           +I GFPGET++ F  T+ L+K+ ++   +   + PR GTPAA M  +VP  V   R R L
Sbjct: 306 LIVGFPGETEDMFQDTLKLLKKVRYDMAYTFIYSPRTGTPAATMGNQVPQEVKSDRLRRL 365

Query: 411 TSVFEAFTPYLG--MEGR 426
            +V    +      MEGR
Sbjct: 366 MAVQNEISLACNKEMEGR 383


>gi|229151973|ref|ZP_04280169.1| hypothetical protein bcere0011_35140 [Bacillus cereus m1550]
 gi|228631528|gb|EEK88161.1| hypothetical protein bcere0011_35140 [Bacillus cereus m1550]
          Length = 509

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|229051301|ref|ZP_04194819.1| hypothetical protein bcere0027_52370 [Bacillus cereus AH676]
 gi|229111783|ref|ZP_04241330.1| hypothetical protein bcere0018_40280 [Bacillus cereus Rock1-15]
 gi|229148157|ref|ZP_04276463.1| hypothetical protein bcere0012_52520 [Bacillus cereus BDRD-ST24]
 gi|228635297|gb|EEK91821.1| hypothetical protein bcere0012_52520 [Bacillus cereus BDRD-ST24]
 gi|228671657|gb|EEL26954.1| hypothetical protein bcere0018_40280 [Bacillus cereus Rock1-15]
 gi|228722059|gb|EEL73486.1| hypothetical protein bcere0027_52370 [Bacillus cereus AH676]
          Length = 450

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/363 (34%), Positives = 194/363 (53%), Gaps = 18/363 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E++PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEVLPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 REL 410
             L
Sbjct: 357 HRL 359


>gi|423389967|ref|ZP_17367193.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG1X1-3]
 gi|401640883|gb|EJS58609.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG1X1-3]
          Length = 509

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 194/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   +    L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P    
Sbjct: 307 DDHLIEV--LGKAGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVF 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|229111245|ref|ZP_04240799.1| hypothetical protein bcere0018_34910 [Bacillus cereus Rock1-15]
 gi|229129049|ref|ZP_04258022.1| hypothetical protein bcere0015_34940 [Bacillus cereus BDRD-Cer4]
 gi|229146344|ref|ZP_04274715.1| hypothetical protein bcere0012_34870 [Bacillus cereus BDRD-ST24]
 gi|296504271|ref|YP_003665971.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis BMB171]
 gi|423585817|ref|ZP_17561904.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD045]
 gi|423641145|ref|ZP_17616763.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD166]
 gi|423656633|ref|ZP_17631932.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD200]
 gi|228636977|gb|EEK93436.1| hypothetical protein bcere0012_34870 [Bacillus cereus BDRD-ST24]
 gi|228654286|gb|EEL10151.1| hypothetical protein bcere0015_34940 [Bacillus cereus BDRD-Cer4]
 gi|228672239|gb|EEL27529.1| hypothetical protein bcere0018_34910 [Bacillus cereus Rock1-15]
 gi|296325323|gb|ADH08251.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis BMB171]
 gi|401233163|gb|EJR39659.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD045]
 gi|401280206|gb|EJR86128.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD166]
 gi|401290374|gb|EJR96068.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD200]
          Length = 509

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|383753488|ref|YP_005432391.1| putative MiaB-like tRNA modifying enzyme family protein
           [Selenomonas ruminantium subsp. lactilytica TAM6421]
 gi|381365540|dbj|BAL82368.1| putative MiaB-like tRNA modifying enzyme family protein
           [Selenomonas ruminantium subsp. lactilytica TAM6421]
          Length = 432

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 191/370 (51%), Gaps = 28/370 (7%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           + + T GC  NQ ++E M G     GY +    E+AD ++INTC+V S        +I +
Sbjct: 4   VALTTLGCKVNQFETETMEGLFKKSGYDIVPFEEKADFYVINTCSVTSLGDRKSRQIIRR 63

Query: 121 CKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK--------G 168
            +   +  ++A  GC  Q    ++K +EGV +V G ++  R+VE VE+  +        G
Sbjct: 64  AQRTNENAIIAVCGCYSQVHPEEIKAIEGVRVVLGTKERSRIVEYVEQAAREDGILDEVG 123

Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
           + +     + +P  D+P+  R      L I  GC   C+YC   +ARG + S  ++ +  
Sbjct: 124 NIMEAHEFEDIPIYDMPQRTRA----FLKIEDGCQNFCSYCIIPYARGPVKSRHLDKIHS 179

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP--- 285
             + ++  G KE+ L+    GAYG+D+   +  L +A    L  +G   LR+G       
Sbjct: 180 EAKKLVDAGFKEIVLTGIHLGAYGKDLDGEV-TLADACREVLKVEGLKRLRLGSLESIEL 238

Query: 286 -PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
            P +   ++E      H      LH+P+Q+GSDAVL  MNR Y  ++F  +++ +   VP
Sbjct: 239 SPDLFALIREDDRFCAH------LHLPLQAGSDAVLKDMNRHYDTAEFGRLIEQVEREVP 292

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVV 403
           G+ ++TDII GFPGET+E F  ++  +++  F ++H+  +  R GTPAA R  ++P  V 
Sbjct: 293 GVAVSTDIIVGFPGETEEQFTDSLKFVEKMNFSRMHVFPYSKRSGTPAAERKDQIPDPVK 352

Query: 404 KKRSRELTSV 413
           K R++ +  +
Sbjct: 353 KDRAKRMQEL 362


>gi|146297053|ref|YP_001180824.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|229890495|sp|A4XL48.1|MIAB_CALS8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|145410629|gb|ABP67633.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 471

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 126/392 (32%), Positives = 201/392 (51%), Gaps = 22/392 (5%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
            +T ++ T+GC  N  DSE +AG L+A GY  T N EEAD+ + NTC V+  ++S +   
Sbjct: 35  NKTYHIITYGCQMNVHDSEKLAGMLNAMGYVETQNLEEADLIIFNTCAVREHAESRVYGN 94

Query: 118 IAKCK--SAKKP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--T 165
           I   K    KKP   + V GC+PQ     ++L  V      I G + + +  +++ +  T
Sbjct: 95  IGPLKRLKDKKPELIIGVCGCMPQQLEVAQKLAKVFPFLDIIFGTKSLHKFPQLLYKAIT 154

Query: 166 LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
            K   + +   + +    +P  RR      + I  GC   C+YC   + RG   S   E 
Sbjct: 155 TKKTVIDVAEDEDVVVEGIPTARREGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRRPEE 214

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMT 283
           ++  ++ + A+GVKEV L  ++  +YG+D+   +P   LL  + A    +G   +R   +
Sbjct: 215 IIFEIQQLAANGVKEVTLLGQNVNSYGKDLPDGIPFYKLLEKVNA---IEGIERIRFVTS 271

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           +P  + + L      L   C +  +H+PVQSGS  +L  MNR YT  D+  +V+ L E +
Sbjct: 272 HPKDLSDELIFAMRDLEKVCEH--IHLPVQSGSTRILRQMNRHYTKEDYLRLVEKLKENI 329

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 402
           P + I TDII GFPGET+EDF  T++++++ +F   +   +  R GT AA+M  +VP  V
Sbjct: 330 PDIAITTDIIVGFPGETEEDFEDTLDVVRKVEFDSAYTFIYSKRKGTKAAQMPNQVPDEV 389

Query: 403 VKKRSRELTSVFE--AFTPYLGMEGRVERIWI 432
             +R + L  + E  A      M G+V  I I
Sbjct: 390 KHERFQRLVKLVEEIALKKNQQMLGKVCEILI 421


>gi|346310403|ref|ZP_08852419.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Collinsella tanakaei YIT
           12063]
 gi|345897693|gb|EGX67604.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Collinsella tanakaei YIT
           12063]
          Length = 452

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/378 (32%), Positives = 189/378 (50%), Gaps = 18/378 (4%)

Query: 51  LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
           ++  I   +T +++TFGC  N  DSE ++G L + G        +ADI +  TC V+  +
Sbjct: 1   MNSSILSGKTYFIRTFGCQMNLHDSERVSGLLDSLGCLEVGEPSDADIVIFMTCCVREAA 60

Query: 111 QSAMDTLIAKCKS------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEV 161
            + +    + CKS       ++ + V GC+ Q  G   L  L+ V ++ G   I  V E+
Sbjct: 61  DTRLYGQCSSCKSLPKSPSGRRVIAVGGCIAQRDGEGLLTNLDNVDVIFGTHSIAHVGEL 120

Query: 162 VEETLKG--HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
           + +  +   H VR    +   A  +P  R   F   +PI  GC   C+YC   + RG   
Sbjct: 121 IAQAFEDGDHHVRCEEIEDKGATSMPWHRATTFHSWVPIMTGCNNFCSYCIVPYVRGREK 180

Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279
           S   E +V  V  ++   V+E+ L  ++  +YGRDI    P   + + A +   G   +R
Sbjct: 181 SRPFEQIVDEVAGLVRSDVREITLLGQNVNSYGRDI-FGKPRFADLLRA-VGETGIERIR 238

Query: 280 IGMTNPPFIL-EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
              ++P  +L E +  +A+V   P V   LH+ VQSGS  VL  MNR YT   +  +V +
Sbjct: 239 FTSSHPKDLLPETINAMADV---PAVMPHLHLAVQSGSTRVLKEMNRRYTREQYIDLVRS 295

Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK- 397
           + E +PG+ + TDII GFPGET+EDF QT++L +E ++ Q     +  R GTPAA +   
Sbjct: 296 IREKIPGIALTTDIIVGFPGETEEDFLQTLSLAEEVRYAQAFTFIYSKREGTPAAMIDDP 355

Query: 398 VPSAVVKKRSRELTSVFE 415
            P  V+  R   L SV E
Sbjct: 356 TPHDVILDRFNRLVSVIE 373


>gi|229098241|ref|ZP_04229188.1| hypothetical protein bcere0020_34750 [Bacillus cereus Rock3-29]
 gi|229104336|ref|ZP_04235005.1| hypothetical protein bcere0019_34840 [Bacillus cereus Rock3-28]
 gi|229117258|ref|ZP_04246636.1| hypothetical protein bcere0017_35380 [Bacillus cereus Rock1-3]
 gi|407706177|ref|YP_006829762.1| uridylate kinase [Bacillus thuringiensis MC28]
 gi|423378442|ref|ZP_17355726.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG1O-2]
 gi|423441498|ref|ZP_17418404.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG4X2-1]
 gi|423448276|ref|ZP_17425155.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG5O-1]
 gi|423464572|ref|ZP_17441340.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG6O-1]
 gi|423533914|ref|ZP_17510332.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus HuB2-9]
 gi|423540817|ref|ZP_17517208.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus HuB4-10]
 gi|423547056|ref|ZP_17523414.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus HuB5-5]
 gi|423615966|ref|ZP_17591800.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD115]
 gi|423623153|ref|ZP_17598931.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD148]
 gi|228666158|gb|EEL21622.1| hypothetical protein bcere0017_35380 [Bacillus cereus Rock1-3]
 gi|228679034|gb|EEL33242.1| hypothetical protein bcere0019_34840 [Bacillus cereus Rock3-28]
 gi|228685139|gb|EEL39070.1| hypothetical protein bcere0020_34750 [Bacillus cereus Rock3-29]
 gi|401128870|gb|EJQ36553.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG5O-1]
 gi|401172005|gb|EJQ79226.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus HuB4-10]
 gi|401178777|gb|EJQ85950.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus HuB5-5]
 gi|401259926|gb|EJR66100.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD148]
 gi|401260503|gb|EJR66676.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD115]
 gi|401635209|gb|EJS52965.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG1O-2]
 gi|402418159|gb|EJV50459.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG4X2-1]
 gi|402420839|gb|EJV53110.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG6O-1]
 gi|402464133|gb|EJV95833.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus HuB2-9]
 gi|407383862|gb|AFU14363.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis MC28]
          Length = 509

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 195/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +  GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   +L   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DLEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPSAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|187932620|ref|YP_001885098.1| hypothetical protein CLL_A0897 [Clostridium botulinum B str. Eklund
           17B]
 gi|187720773|gb|ACD21994.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 434

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 192/360 (53%), Gaps = 16/360 (4%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  NQ ++E M  +    GY++TD  + AD+++INTCTV +        +I+K +  
Sbjct: 7   TLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIISKARRT 66

Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLKGHEVRLLH 175
               ++A  GC  Q    ++ ++EGV +V G +    +V  V     E+ ++     +L 
Sbjct: 67  NSDAIIAVVGCYSQIAPEEVSKIEGVDVVLGTRNKGDIVYFVNKARDEKAIQVSVNEVLR 126

Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
            K+   L++ + + +K    L I  GC   CT+C   +ARG   S   E ++  V+ +  
Sbjct: 127 NKEFEELNIEEYQ-DKTRAFLKIQDGCNRFCTFCLIPYARGATCSKKPEKVLEEVKKLAE 185

Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 294
            G KEV LS   T +YG D+G  + ++  +++ ++   +G   +RIG   P F  + +  
Sbjct: 186 HGFKEVILSGIHTASYGVDLGTGVTLI--SLLEDIEKIEGIDRVRIGSIEPAFFTDEVIN 243

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
             + ++  C +   H+ +QSGSDA L  MNR YT  ++   V TL + +  + I TD+I 
Sbjct: 244 KIKNMKKLCPH--FHLSLQSGSDATLKRMNRRYTADEYAKTVQTLRDNIQDVSITTDLIV 301

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV 413
           GFPGET+E+FN+T   +K+ K  +VH+ ++ PR GT AA M  ++   +  KRS+ L+ +
Sbjct: 302 GFPGETEEEFNETYEYLKKLKLTKVHLFKYSPRKGTKAAEMPNQIDGNIKDKRSKILSEL 361


>gi|145590038|ref|YP_001156635.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|229890594|sp|A4T007.1|MIAB_POLSQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|145048444|gb|ABP35071.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 448

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 124/400 (31%), Positives = 210/400 (52%), Gaps = 22/400 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           +Y+KTFGC  N+ DS  MA  L A  G  +TD  E+AD+ L+NTC+++  ++  + + + 
Sbjct: 4   LYIKTFGCQMNEYDSGKMADLLHADEGMVMTDTPEDADVVLLNTCSIREKAEDKVFSDLG 63

Query: 120 KCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLK-GHE 170
           + +  KK      + V GCV   +G + +     V +V G Q + R+ +++ +  K G  
Sbjct: 64  RLRELKKTKPHMLIGVGGCVASQEGRQIVSRAPYVDVVFGPQTLHRLSDLIAQRRKTGLS 123

Query: 171 VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
              +   ++   D LP  R+ +    + I  GC   C+YC   + RG   S   + ++  
Sbjct: 124 QVDISFPEIEKFDHLPASRQTRGSAYVSIMEGCSKYCSYCVVPYTRGEEVSRPFDDVLTE 183

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGMTNP 285
           V  + + GVKE+ L  ++  AY   +G    I    LL   +AE+P  G   +R   ++P
Sbjct: 184 VAGLASKGVKEIVLLGQNVNAYLGKMGDAEEIADFALLIEYIAEIP--GVERIRFTTSHP 241

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
               + L ++    + P + S LH+PVQ GSD++LSAM R YT  ++++++  +  + P 
Sbjct: 242 KEFTQRLIDV--YAKVPKLVSHLHLPVQHGSDSILSAMKRGYTALEYKSIIRKMRAVRPD 299

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
           + +++D I GFPGETD DF + + +++E  F       F PRPGTPAA +    P  V  
Sbjct: 300 LTLSSDFIVGFPGETDADFEKLLKMVQELDFDNSFCFIFSPRPGTPAANLSDDTPYEVKL 359

Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHL 442
           KR + L ++ E  +  +   M G+ ER+ I  +A DG++L
Sbjct: 360 KRLQTLLALIEGQSNQISQKMLGKTERVLIEGLAKDGVNL 399


>gi|171464142|ref|YP_001798255.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|229890593|sp|B1XS06.1|MIAB_POLNS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|171193680|gb|ACB44641.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 448

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 126/403 (31%), Positives = 209/403 (51%), Gaps = 28/403 (6%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           +Y+KTFGC  N+ DS  MA  L A  G  +TD  E+AD+ L+NTC+++  ++  + + + 
Sbjct: 4   LYIKTFGCQMNEYDSGKMADLLHADEGMVMTDRPEDADVVLLNTCSIREKAEDKVFSDLG 63

Query: 120 KCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
           + +  KK      + V GCV   +G + +     V +V G Q + R+ +++    K  E 
Sbjct: 64  RLRELKKTKPNLLIGVGGCVASQEGQQIVSHAPYVDVVFGPQTLHRLSDLIA---KRRET 120

Query: 172 RLLHRK-KLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
            L       P ++    LP  R+ +    + I  GC   C+YC   + RG   S + + +
Sbjct: 121 GLFQVDISFPEIEKFDHLPASRQTRGSAYVSIMEGCSKYCSYCVVPYTRGEEVSRSFDDV 180

Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGM 282
           +  V  + + GVKE+ L  ++  AY   +G    I    LL   + E+P  G   +R   
Sbjct: 181 LTEVAGLASKGVKEIVLLGQNVNAYLGKMGDRQEIADFALLIEYIVEIP--GVERIRFTT 238

Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
           ++P    + L ++    + P + S LH+PVQ GSDA+LSAM R YT  +F++++  +  +
Sbjct: 239 SHPKEFTQRLIDV--YTKVPKLVSHLHLPVQHGSDAMLSAMKRGYTALEFKSIIRKMRAV 296

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSA 401
            P + +++D I GFPGET+ DF + + +++E  F       F PRPGTPAA +    P  
Sbjct: 297 RPDLTLSSDFIVGFPGETEADFEKLLKMVEELNFDNSFCFIFSPRPGTPAANLHDDTPYE 356

Query: 402 VVKKRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHL 442
           V  KR + L ++ E+    +   M G +ER+ I  +A DGI+L
Sbjct: 357 VKLKRLQTLLALVESQANQISQKMLGNIERVLIEGLAKDGINL 399


>gi|438002158|ref|YP_007271901.1| MiaB family protein, possibly involved in tRNA or rRNA modification
           [Tepidanaerobacter acetatoxydans Re1]
 gi|432178952|emb|CCP25925.1| MiaB family protein, possibly involved in tRNA or rRNA modification
           [Tepidanaerobacter acetatoxydans Re1]
          Length = 435

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 188/365 (51%), Gaps = 21/365 (5%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC--K 122
           T GC  NQ +S  +A      GY + D   +AD+++INTC V + S      +I K    
Sbjct: 8   TLGCKVNQYESAAIAELFENKGYEIVDFDTKADVYVINTCNVTNESARKSRQIIRKAIRN 67

Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHE-----VRLLH 175
           +    + V GC  Q +  ++  ++GVS+ VG +   R+V++VE+  +  +       ++ 
Sbjct: 68  NPSAKVAVVGCYVQMALHEVLNIKGVSVAVGTKDRHRIVDLVEKAEQCSKPIVTVGNIMK 127

Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
           ++    + L K  R K    L I  GC   C+YC   +ARG + S ++++++   +++  
Sbjct: 128 QQTFEEIAL-KGHRQKTRAFLKIQDGCNMFCSYCIIPYARGPVRSRSIDNIIDEAQSLAK 186

Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
           DG KE+ L+    G YGRD       LL+ I      +G   +R+        +E ++  
Sbjct: 187 DGFKEIVLTGIHLGLYGRDFKDENIHLLDVISRIADIEGIERIRLSS------IEAMELT 240

Query: 296 AEVLRHPC----VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
            E L+  C    +    HVP+QSG D VL  MNR YT  +FR  +D + +L+P   I TD
Sbjct: 241 DEFLKSLCGIKKICHHFHVPLQSGCDTVLRRMNRRYTTDEFRDRIDYIRQLMPDASITTD 300

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSREL 410
           +I GFPGET+E+F QT N IKE  F ++H+  F PR GT A  M  ++  +V  +RS  L
Sbjct: 301 VIVGFPGETEEEFKQTENFIKEINFSRLHVFPFSPRKGTLADDMPNQIEKSVKVERSHRL 360

Query: 411 TSVFE 415
            S+ E
Sbjct: 361 ISLSE 365


>gi|228923063|ref|ZP_04086355.1| hypothetical protein bthur0011_40430 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|423634866|ref|ZP_17610519.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD156]
 gi|228836561|gb|EEM81910.1| hypothetical protein bthur0011_40430 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|401278852|gb|EJR84782.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD156]
          Length = 450

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 131/394 (33%), Positives = 202/394 (51%), Gaps = 20/394 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADG 439
             L  +          G EG V  I   E   +G
Sbjct: 357 HRLIELSNQLAKEYASGFEGEVLEIIPEEQFKEG 390


>gi|423458045|ref|ZP_17434842.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG5X2-1]
 gi|401148429|gb|EJQ55922.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG5X2-1]
          Length = 509

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 194/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   +    L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P    
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVF 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|167754793|ref|ZP_02426920.1| hypothetical protein CLORAM_00297 [Clostridium ramosum DSM 1402]
 gi|167705625|gb|EDS20204.1| tRNA methylthiotransferase YqeV [Clostridium ramosum DSM 1402]
          Length = 428

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 190/362 (52%), Gaps = 16/362 (4%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T+   T GC  N  +S  M    +  GY   D  + AD+++INTCTV +   S    +I
Sbjct: 2   KTVAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKSRQMI 61

Query: 119 AKC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV--- 171
            K   K+ K  + V GC  Q +  +++++EGV +V G Q    +V+ V+E L   E+   
Sbjct: 62  RKAIRKNPKATICVVGCYSQTAPEEIEKIEGVGVVLGTQYRSDIVKYVDEHLGTGEMVIK 121

Query: 172 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
              +++ +K   L++ + +  +    L I  GC   CTYC   +ARG + S   ES++ +
Sbjct: 122 VDNVMNLRKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRQKESVLNQ 179

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
            + ++ +G  E+ L+   T  YG D+  +       +V  +   G   LRI       I 
Sbjct: 180 AQKLVDNGYVEIVLTGIHTAGYGEDL--DDYSFYELLVDLVKIKGLKRLRISSIETSQIS 237

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           + + ++  +  +  +   LHVP+Q+GSDA L  MNR+YT +++   ++ +   +P +   
Sbjct: 238 DEIIDL--IGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYLPNIAFT 295

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
           TD+I GFPGETDE+F +T N IK+  + ++H+  + PR  TPAA+MK +V   +  +R+ 
Sbjct: 296 TDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKDQVNDQIKHERAN 355

Query: 409 EL 410
            L
Sbjct: 356 RL 357


>gi|399924401|ref|ZP_10781759.1| Fe-S oxidoreductase [Peptoniphilus rhinitidis 1-13]
          Length = 432

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 197/384 (51%), Gaps = 29/384 (7%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T  + T GC  NQ +SE M+      GY   DN E +D++++NTCTV + S       I
Sbjct: 3   KTFSILTLGCKVNQYESEAMSELFEKRGYKEVDNDEFSDVYIVNTCTVTNLSDRKSRQFI 62

Query: 119 AKCKSAKKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
            K K  K P   +VV GC  Q S  ++K +EGV +V G  + +++V+++EE    H    
Sbjct: 63  RKSKK-KNPDSVVVVVGCYSQVSPEEVKNIEGVDVVIGTTERNKIVDLIEEFKDSH---- 117

Query: 174 LHRKKLPAL-DLPKVRR----------NKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
              KK+  + DL  VR           N+    + +  GC   CTYC    ARG + S  
Sbjct: 118 ---KKINIVKDLKDVREFANTTNFDNNNRTRAYMKVQDGCNRFCTYCIIPFARGPIRSRE 174

Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
           ++  V   R +  +G KE+ L+    G++G D+G    I L   +AE+  DG   +R+  
Sbjct: 175 IDDAVREARILADNGFKEIVLTGIHIGSFGMDMGDMRLIDLIENIAEI--DGIKRIRLSS 232

Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
             P  I +   E +  L+   +    H+ +QSGS+ +L AMNR YT  ++    + + + 
Sbjct: 233 VEPIIITDEFMERS--LKTEKLCDHFHLSLQSGSNNILKAMNRRYTREEYIEKANIIRKY 290

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 401
           +P   + TDII GFPGE++EDF  +++++++  F ++H+ ++  R  T AA MK ++   
Sbjct: 291 MPYAGLTTDIIVGFPGESEEDFEDSMSIVRKVGFSRIHVFKYSKRKNTKAAAMKNQIDGN 350

Query: 402 VVKKRSRELTSVFEAFTPYLGMEG 425
           + K+RS +L ++ E +      E 
Sbjct: 351 IKKERSEKLIALGEEYQKIFEREN 374


>gi|17228807|ref|NP_485355.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Nostoc sp. PCC
           7120]
 gi|81772425|sp|Q8YXA3.1|MIAB_NOSS1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|17130659|dbj|BAB73269.1| alr1312 [Nostoc sp. PCC 7120]
          Length = 454

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/396 (32%), Positives = 202/396 (51%), Gaps = 31/396 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  +++   AD+ L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEDMGFKFSEDPNNADLILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K       LVVAGCV Q  G   L+ +  + +V G Q  +R+ +++E    G++V  
Sbjct: 69  AKRKHEQPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ + RR+  V    +NV  GC   CTYC   + RG   S T  ++   + 
Sbjct: 129 TEAVHIME-DITQARRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPAAVRAEME 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
            +   G KE+ L  ++  AYGRD+      G +L    + +  V ++P  G   +R   +
Sbjct: 187 ELGRQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTFTDLLYYVHDVP--GVERIRFATS 244

Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
           +P +  E L K  AE+   P V    H+P QSG + +L AM R YT   +R ++DT+   
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNQLLKAMARGYTQEKYRRIIDTIRRY 301

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
           +P   I+ D I GFPGET+E F  T+ L+ +  F Q++ + + PRPGTPAA  +   S  
Sbjct: 302 MPDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWENQLSEE 361

Query: 403 VK----KRSRELTSVFEAFTPYLGMEGRVERIWITE 434
           VK    +R   L +V  A      M GR+E + + E
Sbjct: 362 VKSDRLQRLNHLVNVKAAERSQRYM-GRIEEVLVEE 396


>gi|375101866|ref|ZP_09748129.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Saccharomonospora cyanea NA-134]
 gi|374662598|gb|EHR62476.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Saccharomonospora cyanea NA-134]
          Length = 498

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/372 (33%), Positives = 190/372 (51%), Gaps = 24/372 (6%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
           T T  ++TFGC  N  DSE +AGQL   GYAL  + E+ D+ ++NTC V+  + + +   
Sbjct: 2   TRTYAIRTFGCQMNVHDSERLAGQLEDAGYALATDGEDPDVVVLNTCAVRENADNKLYGH 61

Query: 118 IAKCKSAK--KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
           +   ++AK  KP   + V GC+ Q  R   +K    V +V G   I  +  ++E      
Sbjct: 62  LGHLRAAKTSKPGMQIAVGGCLAQKDRGEIVKRAPWVDVVFGTHNISSLPVLLERARHNA 121

Query: 170 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           E  V +L   +     LP  R + +   + I+VGC   CT+C     RG         ++
Sbjct: 122 EAQVEILESLETFPSTLPARRESAYSGWVSISVGCNNTCTFCIVPSLRGKERDRRPGEIL 181

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNP 285
             V  ++A+GV EV L  ++  +YG + G       +A    L   GS   + R+  T+P
Sbjct: 182 AEVEALVAEGVLEVTLLGQNVNSYGVEFGDR-----HAFGKLLRACGSVEGLERVRFTSP 236

Query: 286 ---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
               F  + +  +AE    P V   LH+P+QSGSD VL AM R Y  + F +++D +   
Sbjct: 237 HPAAFTDDVIDAMAET---PNVCHQLHMPLQSGSDRVLKAMRRSYRSTRFLSILDRVRAA 293

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSA 401
           +P   I TDII GFPGET+EDF QT+ ++++ +F      Q+  RPGTPAA M  +VP  
Sbjct: 294 MPDAAITTDIIVGFPGETEEDFEQTLQVVRQARFSSAFTFQYSQRPGTPAADMPGQVPKE 353

Query: 402 VVKKRSRELTSV 413
           VV++R   L  +
Sbjct: 354 VVQERYDRLVEL 365


>gi|229174437|ref|ZP_04301969.1| hypothetical protein bcere0006_35300 [Bacillus cereus MM3]
 gi|228608997|gb|EEK66287.1| hypothetical protein bcere0006_35300 [Bacillus cereus MM3]
          Length = 509

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 194/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   +    L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P    
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVF 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|229092810|ref|ZP_04223948.1| hypothetical protein bcere0021_35610 [Bacillus cereus Rock3-42]
 gi|228690608|gb|EEL44389.1| hypothetical protein bcere0021_35610 [Bacillus cereus Rock3-42]
          Length = 457

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNAL 430


>gi|222098978|ref|YP_002533546.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
           neapolitana DSM 4359]
 gi|221571368|gb|ACM22180.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga neapolitana
           DSM 4359]
          Length = 443

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 126/397 (31%), Positives = 211/397 (53%), Gaps = 19/397 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA- 119
            Y+KTFGC  N++DSE MAG L   G+      EEAD+ +INTC V+  S+    + +  
Sbjct: 3   FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62

Query: 120 --KCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 174
             K K  +K +V VAGCV +  R+ L E     ++G + + RV E V++ L+G +V L  
Sbjct: 63  MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVPRVTEAVKKALEGEKVALFE 122

Query: 175 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
            H  +    +LP++R ++    + I  GC   CTYC   + RG   S  +  ++  V+ +
Sbjct: 123 DHLDEYTH-ELPRIRTSRHHAWVTIIHGCDRFCTYCIVPYTRGRERSRPMADILEEVKKL 181

Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
              G +EV    ++  AYG+D+  G +L  LL         +G   +    + P    + 
Sbjct: 182 AEQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS---KIEGIERIWFLTSYPTDFSDE 238

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           L E+  + ++P V   +H+PVQSGS+ +L  MNR YT  ++  +++ +   VP + I++D
Sbjct: 239 LIEV--IAKNPKVAKSVHLPVQSGSNRILKLMNRRYTKEEYLALLEKIRSKVPEVAISSD 296

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRE 409
           II GFP ET+EDF +TV+L+++ +F +++++ + PR GT A +  K  VP     +R + 
Sbjct: 297 IIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVPYEEKVRRMQF 356

Query: 410 LTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVR 444
           L ++ +     L     G+  RI +   A +G+   R
Sbjct: 357 LMNLQKRINRKLNERYRGKTVRIIVEAQAKNGLFYGR 393


>gi|342213682|ref|ZP_08706404.1| MiaB-like protein [Veillonella sp. oral taxon 780 str. F0422]
 gi|341597707|gb|EGS40249.1| MiaB-like protein [Veillonella sp. oral taxon 780 str. F0422]
          Length = 433

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/373 (34%), Positives = 190/373 (50%), Gaps = 14/373 (3%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T+   T GC  NQ D++ M G     GY      EEA I++INTC+V +  +     LI
Sbjct: 2   KTVAFTTLGCRVNQYDTDAMKGLFIKAGYTPVGFDEEAAIYVINTCSVTNMGEKKSRQLI 61

Query: 119 --AKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHE---- 170
             AK ++ +  +VV GC  Q + + +  ++GV++V G    +++VE+VE      E    
Sbjct: 62  RQAKRRNPEAFIVVTGCYAQLAPEVISAIDGVNLVIGTANRNKIVELVENIPSTEEQISI 121

Query: 171 VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           VR ++       + L      K    + I  GC   C++C   + RG L S  +E +V  
Sbjct: 122 VRNVMEESTFEEMPLFGNEIEKCRAFMKIQEGCNNFCSFCIIPYTRGKLKSRKIEDIVEE 181

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
            + ++A G KEV L+    G YG ++    P L   +   L  DG   +R G      + 
Sbjct: 182 AKRLVAYGYKEVVLTGIHLGNYGIELP-ERPTLGRVVRELLTIDGLERIRFGSIESVEVS 240

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           E L E+  +  +P V   LH+P+Q+GSD VL +MNR Y L  ++ +V  L   +P + I 
Sbjct: 241 EELIEL--MATNPRVCPNLHLPLQAGSDPVLKSMNRHYNLQQYKDLVKYLRSRIPNLSIT 298

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
           TDII GFPGETDE F +T+  +KE  F  +H   +  R GTPAA+M+ +VP AV K R  
Sbjct: 299 TDIIAGFPGETDELFEETMRTVKEVGFTHIHAFPYSIREGTPAAKMEDQVPEAVKKTRVA 358

Query: 409 ELTSV-FEAFTPY 420
            L  +  E F  Y
Sbjct: 359 LLNQLGKEGFKAY 371


>gi|291454555|ref|ZP_06593945.1| RNA modification enzyme [Streptomyces albus J1074]
 gi|291357504|gb|EFE84406.1| RNA modification enzyme [Streptomyces albus J1074]
          Length = 505

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 124/394 (31%), Positives = 198/394 (50%), Gaps = 19/394 (4%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSEE--ADIWLINTCTVKSPSQSA 113
           G +T  ++T+GC  N  DSE +AG L   GY  + + +EE  AD+ + NTC V+  + + 
Sbjct: 40  GVKTYEVRTYGCQMNVHDSERLAGLLEGAGYVRSPEGTEEGDADVVVFNTCAVRENADNR 99

Query: 114 MDTLIAKCKSAK--KP---LVVAGCVPQGSRDL--KELEGVSIV-GVQQIDRVVEVVEET 165
           +   + +    K  +P   + V GC+ Q  RD   K    V +V G   I ++  ++E  
Sbjct: 100 LYGNLGRLAPMKTRRPGMQIAVGGCLAQKDRDTITKRAPWVDVVFGTHNIGKLPVLLERA 159

Query: 166 LKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
               E ++   + L A    LP  R + +   + ++VGC   CT+C     RG       
Sbjct: 160 RVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSVSVGCNNTCTFCIVPALRGKEKDRRT 219

Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
             ++  V  ++A+GV E+ L  ++  AYG DIG +       + A    +G   +R    
Sbjct: 220 GDILAEVEALVAEGVSEITLLGQNVNAYGSDIG-DRQAFSKLLRACGKIEGLERVRFTSP 278

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           +P    + +  IA +   P V   LH+P+QSGSD VL AM R Y    F ++++ +   +
Sbjct: 279 HPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQERFLSIIEKVRAAI 336

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402
           P   I TDII GFPGET+EDF QT++ ++E +F Q    Q+  RPGTPAA M  ++P  V
Sbjct: 337 PDAAITTDIIVGFPGETEEDFQQTLHTVREARFAQAFTFQYSKRPGTPAAEMDGQIPKEV 396

Query: 403 VKKRSRELTSVFE--AFTPYLGMEGRVERIWITE 434
           V++R   L ++ E  ++       GRV  + + E
Sbjct: 397 VQERYMRLVALQEEISWEENKKQTGRVLEVMVAE 430


>gi|423470532|ref|ZP_17447276.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG6O-2]
 gi|402436198|gb|EJV68230.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG6O-2]
          Length = 450

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 130/394 (32%), Positives = 202/394 (51%), Gaps = 20/394 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  +++D+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  +  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRQERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADG 439
             L  +          G EG V  I   E   DG
Sbjct: 357 HRLIELSNQLAKEYASGFEGEVLEIIPEETFKDG 390


>gi|384265286|ref|YP_005420993.1| (Dimethylallyl)adenosine tRNA methylthiotransferase ymcB [Bacillus
           amyloliquefaciens subsp. plantarum YAU B9601-Y2]
 gi|387898282|ref|YP_006328578.1| tRNA-i(6)A37 methylthiotransferase [Bacillus amyloliquefaciens Y2]
 gi|380498639|emb|CCG49677.1| (Dimethylallyl)adenosine tRNA methylthiotransferase ymcB [Bacillus
           amyloliquefaciens subsp. plantarum YAU B9601-Y2]
 gi|387172392|gb|AFJ61853.1| tRNA-i(6)A37 methylthiotransferase [Bacillus amyloliquefaciens Y2]
          Length = 509

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 194/371 (52%), Gaps = 16/371 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  T++ ++A++ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ KK      L V GC+ Q     +R LK+   V ++ G   I R+ E++ E     E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             + +  ++     +LPKVR  K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + ++G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFD-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+  + +   +   +H+PVQSGS A+L  M R+Y    +  +V  +   +P   +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424

Query: 408 RELTSVFEAFT 418
           + L  + +  +
Sbjct: 425 QRLNDLVKEIS 435


>gi|381210061|ref|ZP_09917132.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lentibacillus
           sp. Grbi]
          Length = 526

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/364 (32%), Positives = 191/364 (52%), Gaps = 16/364 (4%)

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
           ++T+GC  N+ D+E MAG L+  GY  T+++++ADI L+NTC ++  +++ +   I   K
Sbjct: 87  IRTYGCQMNEHDTEVMAGILNEMGYESTNDTKDADIILLNTCAIRENAENKVFGEIGHLK 146

Query: 123 SAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
           + K+      L V GC+ Q     +R +K+   V ++ G   I R+  +V+E + G E  
Sbjct: 147 ALKREKPDLILGVCGCMSQEEKVVNRIMKKHPQVDLIFGTHNIHRLPHLVKEAMFGKEKV 206

Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           V +  ++     +LPK R+ K    + I  GC   CTYC     RG   S   E ++  V
Sbjct: 207 VEVWSKEGDIIENLPKARKGKVKAWVNIMYGCDKFCTYCIVPMTRGKERSRLPEDIIQEV 266

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           R + A G KE+ L  ++  AYG+D   +    L  ++ +L       +R   ++P    +
Sbjct: 267 RHLTAQGYKEITLLGQNVNAYGKDFE-DSDYGLGDLMDDLHKIDIPRIRFTTSHPRDFDD 325

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
            L E+  + +   +   +H+PVQSGS  VL  MNR YT  ++  +V  + E +P   + T
Sbjct: 326 RLIEV--LAKGGNLLDHIHLPVQSGSSEVLKKMNRRYTREEYLELVRKIREAMPNATLTT 383

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
           DII GFP ET+E F +T++L++E  F       + PR GTPAAR +  VP  V K+R   
Sbjct: 384 DIIVGFPNETEEQFEETMSLVEEVGFESAFTFIYSPREGTPAARKQDDVPEEVKKQRLYR 443

Query: 410 LTSV 413
           L  +
Sbjct: 444 LNEL 447


>gi|319764320|ref|YP_004128257.1| tRNA-i(6)a37 thiotransferase enzyme miab [Alicycliphilus
           denitrificans BC]
 gi|330826382|ref|YP_004389685.1| MiaB family RNA modification protein [Alicycliphilus denitrificans
           K601]
 gi|317118881|gb|ADV01370.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alicycliphilus
           denitrificans BC]
 gi|329311754|gb|AEB86169.1| RNA modification enzyme, MiaB family [Alicycliphilus denitrificans
           K601]
          Length = 449

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 133/396 (33%), Positives = 203/396 (51%), Gaps = 22/396 (5%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
           ++ +++KTFGC  N+ DS  MA  L +A  Y  TDN EEAD+ L NTC+V+  +Q  + +
Sbjct: 2   SKKVFIKTFGCQMNEYDSAKMADVLGAAQDYQSTDNPEEADLILFNTCSVREKAQEKVFS 61

Query: 117 LIAKCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            + + K  K+  V   V GCV   +G   +K    V +V G Q + R+ E++    K H+
Sbjct: 62  DLGRVKHLKEKGVLIGVGGCVASQEGEEIIKRAPFVDVVFGPQTLHRLPELLSAREKQHK 121

Query: 171 VRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
            ++ +   ++   D LP  R       + I  GC   C+YC   + RG   S   E ++ 
Sbjct: 122 PQVDISFPEIEKFDHLPPARVEGASAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDVLV 181

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMT 283
            V  +   GVKEV L  ++  AY   +G      +  +LL   VAE+P  G   +R   +
Sbjct: 182 EVAGLADQGVKEVTLLGQNVNAYLGTMGDTAEKADFALLLE-YVAEIP--GIERIRYTTS 238

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           +P      L  I    R P + S LH+PVQ GSD +L AM R YT  ++++ V  L  + 
Sbjct: 239 HPNEFTPRL--IEAYARIPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTVRKLKAIR 296

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 402
           PGM +++D I GFPGET+EDF + + LI + +F       F PRPGTPAA +    P  V
Sbjct: 297 PGMAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDDTPHDV 356

Query: 403 VKKRSRELTSVFEAFTPYLGME--GRVERIWITEIA 436
             +R +EL +V       +  E  G V+R+ +  ++
Sbjct: 357 KLRRLQELQAVINRNILEISQERVGTVQRLLVEGVS 392


>gi|410456328|ref|ZP_11310191.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           bataviensis LMG 21833]
 gi|409928242|gb|EKN65360.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           bataviensis LMG 21833]
          Length = 514

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 194/372 (52%), Gaps = 18/372 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  TD +E+A++ L+NTC ++  +++ +   +  
Sbjct: 71  FYIRTYGCQMNEHDTEVMAGIFLALGYEPTDRTEDANVILLNTCAIRENAENKVFGELGH 130

Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ K  KP   + V GC+ Q     ++ LK  + V ++ G   I R+  ++ E     E
Sbjct: 131 LKALKLEKPDLLIGVCGCMSQEESVVNKILKTYQQVDMIFGTHNIHRLPNILHEAYMSKE 190

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR K    + I  GC   CTYC     RG   S   E ++ 
Sbjct: 191 MVVEVWSKEGDVIENLPKVRRGKIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEEIIQ 250

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            VR + A G +EV L  ++  AYG+D+ GVN    L  ++ +L       +R   ++P  
Sbjct: 251 EVRQLAAQGYQEVTLLGQNVNAYGKDLEGVNYG--LGELMDDLRKIDIPRIRFTTSHPRD 308

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + L E+  + +   +   +H+PVQSGS  VL  M R+YT   +  +V  +   +P + 
Sbjct: 309 FDDRLIEV--LAKGGNLMDHIHLPVQSGSTDVLKIMARKYTREQYLELVRKIKAAIPNVA 366

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ETDE F +T++L +E  +   +   + PR GTPAA+M+  VP  V K R
Sbjct: 367 LTTDIIVGYPNETDEQFEETMSLYREVGYELAYTFIYSPREGTPAAKMEDNVPMEVKKAR 426

Query: 407 SRELTSVFEAFT 418
            + L ++    +
Sbjct: 427 LQRLNALVNELS 438


>gi|386358193|ref|YP_006056439.1| hypothetical protein SCATT_45450 [Streptomyces cattleya NRRL 8057 =
           DSM 46488]
 gi|365808700|gb|AEW96916.1| hypothetical protein SCATT_45450 [Streptomyces cattleya NRRL 8057 =
           DSM 46488]
          Length = 535

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/373 (32%), Positives = 191/373 (51%), Gaps = 15/373 (4%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE-ADIWLINTCTVKSPSQSAMDT 116
            +T  ++T+GC  N  DSE +AG L   GY      E+ AD+ + NTC V+  + + +  
Sbjct: 6   AKTYEVRTYGCQMNVHDSERLAGLLEDAGYVRAPGGEDTADVIVFNTCAVRENADNRLYG 65

Query: 117 LIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKG 168
            + +   K A +P   + V GC+ Q  RD  +++   V +V G   I R+  ++E     
Sbjct: 66  NLGRLAPKKAARPGMQIAVGGCLAQKDRDTIVRKAPWVDVVFGTHNIGRLPVLLERARIA 125

Query: 169 HEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
            E ++   + L A    LP  R + +   + I+VGC   CT+C     RG         +
Sbjct: 126 EEAQVEIAESLEAFPSTLPTRRESAYAAWVAISVGCNNTCTFCIVPALRGKEKDRRPGDI 185

Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
           +  V  ++ADGV EV L  ++  AYG DIG +       + A    +G   +R    +P 
Sbjct: 186 LAEVEALVADGVIEVTLLGQNVNAYGSDIG-DREAFSKLLRACGNVEGLERVRFTSPHPR 244

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
              + +  IA +   P V   LH+P+QSGSDAVL +M R Y    +  +++ +   +P  
Sbjct: 245 DFTDDV--IAAMAETPNVMHQLHMPLQSGSDAVLKSMRRSYRQDRYLGIIEKVRAAMPDA 302

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
            I+TDII GFPGET+ DF QT+++++E +F Q    Q+  RPGTPAA M  ++P  VV++
Sbjct: 303 AISTDIIVGFPGETEADFEQTLHVVREARFAQAFTFQYSKRPGTPAATMDGQIPKEVVQE 362

Query: 406 RSRELTSVFEAFT 418
           R   L ++ E  +
Sbjct: 363 RYERLVALQEEIS 375


>gi|282850159|ref|ZP_06259538.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula ATCC
           17745]
 gi|282579652|gb|EFB85056.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula ATCC
           17745]
          Length = 437

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 123/385 (31%), Positives = 202/385 (52%), Gaps = 23/385 (5%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           ++ Y+ T+GC  N +DSE ++ QL + GY  T+N E AD+ L+NTC V+  +++ +   I
Sbjct: 2   KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61

Query: 119 AKCKSAK---KPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            + K  K   K L++A  GC+ Q ++    K    + IV G   I  + E++EE   GH 
Sbjct: 62  GELKRLKRNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQHGHT 121

Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            ++   +    LP L+        F   +PI  GC   CTYC   H RG   S  VE++V
Sbjct: 122 HQISVDMDNSVLPELEAKP--NGSFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
             V  +   G KE+ L  ++  +YG D   G +   L++A+   +P  G   +R   ++P
Sbjct: 180 KEVTDLGVKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDALDG-IP--GIERIRYMTSHP 236

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             + + +  I  + R   + + LH+P+QSGS+ +L  MNR YT+  ++ ++    E +  
Sbjct: 237 QDMSKSM--IDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCREKIKD 294

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
           + + TDII GFPGET+EDF  T+ L+K+ ++   +   +  R GTPAA M  ++P  + +
Sbjct: 295 VVVTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQIPEEIKR 354

Query: 405 KRSRELTSVFEAFTPYLG--MEGRV 427
            R + L  V    +  L   MEG+V
Sbjct: 355 VRLQILMDVQNEISYELNKPMEGQV 379


>gi|334117224|ref|ZP_08491316.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcoleus vaginatus FGP-2]
 gi|333462044|gb|EGK90649.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcoleus vaginatus FGP-2]
          Length = 447

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 191/361 (52%), Gaps = 24/361 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  +++  EA + L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILENMGFEFSEDPNEASLILYNTCTIRDNAEQRVYSNLGRQ 68

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K+      L+VAGCV Q  G   L+ +  + +V G Q  +R+ +++E+  +G++V  
Sbjct: 69  AHRKRQEPGLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLEDLLEQVFEGNQVVA 128

Query: 174 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
               ++   D+ K RR+ K    + +  GC   CTYC   + RG   S   E++   +  
Sbjct: 129 TEAVEIME-DITKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRMPEAIRAEMED 187

Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
           +   G KEV L  ++  AYGRD+      G N   L + +  V ++P  G   LR   ++
Sbjct: 188 LGRQGYKEVTLLGQNIDAYGRDLPGTKPDGSNQHTLTDLLYFVQDVP--GVDRLRFATSH 245

Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           P +  E L K  AE+   P V    H+P QSG + +L AM+R YT   +R ++DT+   +
Sbjct: 246 PRYFTERLIKACAEL---PQVCEHFHIPFQSGDNDILKAMSRGYTQEKYRRIIDTIRRYM 302

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
           P   I  D I GFPGET+  F +T+ LI++  F  V+ + + PRPGTPAA  +   S  V
Sbjct: 303 PDASITADAIVGFPGETEAQFEKTLKLIEDVGFDLVNTAAYSPRPGTPAALWENQLSEEV 362

Query: 404 K 404
           K
Sbjct: 363 K 363


>gi|229086881|ref|ZP_04219040.1| hypothetical protein bcere0022_34550 [Bacillus cereus Rock3-44]
 gi|228696391|gb|EEL49217.1| hypothetical protein bcere0022_34550 [Bacillus cereus Rock3-44]
          Length = 450

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 18/363 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIHQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVS--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ ++P  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQIPEEVKNDRV 356

Query: 408 REL 410
             L
Sbjct: 357 HRL 359


>gi|423452386|ref|ZP_17429239.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG5X1-1]
 gi|401140024|gb|EJQ47581.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG5X1-1]
          Length = 450

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 130/394 (32%), Positives = 202/394 (51%), Gaps = 20/394 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  +++D+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  +  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRQERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADG 439
             L  +          G EG V  I   E   DG
Sbjct: 357 HRLIELSNQLAKEYASGFEGEVLEIIPEETFKDG 390


>gi|401679764|ref|ZP_10811688.1| MiaB-like protein [Veillonella sp. ACP1]
 gi|400218891|gb|EJO49762.1| MiaB-like protein [Veillonella sp. ACP1]
          Length = 431

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 184/367 (50%), Gaps = 13/367 (3%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T+   T GC  NQ D++ M G      Y   D   +ADI++INTC+V +  +     LI
Sbjct: 2   KTVAFTTLGCRVNQYDTDAMKGLFLQHDYEAVDFDSKADIYVINTCSVTNMGEKKSRQLI 61

Query: 119 AKCKSAKKP--LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEE----TLKGHE 170
            K K   +   ++V GC  Q   D +  ++GV++V G     ++VE+VE+      + + 
Sbjct: 62  RKAKRQNQDAYVIVTGCYAQLDADAIAAIDGVNLVIGTNNRSKIVELVEQLETTERQINA 121

Query: 171 VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           VR ++       + L     +K    + I  GC   C +C   + RG L S  V+ +V  
Sbjct: 122 VRDIMKESNFEEMPLFGNESDKSRAFMKIQEGCNNYCAFCIIPYTRGKLKSRKVDDIVNE 181

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
            + ++  G  E+ L+    G YG ++    P L + + A L       +R G      + 
Sbjct: 182 AKRLVEHGFHEIVLTGIHLGNYGVELP-ERPTLADVVKALLEIPNLHRIRFGSIESVEVS 240

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           + L E+    +  C +  LH+P+Q+GSD VL+ M R YTL +++ ++  L   +P + I 
Sbjct: 241 DELIELMATDKRVCPH--LHLPLQAGSDHVLTLMKRHYTLQEYKDLIKNLRNRIPDLSIT 298

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 408
           TDII GFP ETDEDF++T+N +KE  F  +H   +  R GTPAA M  +VP AV K R  
Sbjct: 299 TDIIAGFPQETDEDFDETMNTVKEIGFTHIHAFPYSIREGTPAATMPNQVPEAVKKARVA 358

Query: 409 ELTSVFE 415
            L  + E
Sbjct: 359 LLNDLSE 365


>gi|49478367|ref|YP_037833.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52141716|ref|YP_085113.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           cereus E33L]
 gi|196038441|ref|ZP_03105750.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
 gi|81395139|sp|Q6HF43.1|MIAB_BACHK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81686624|sp|Q636Q4.1|MIAB_BACCZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|49329923|gb|AAT60569.1| conserved hypothetical protein, possible tRNA 2-methylthioadenine
           synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|51975185|gb|AAU16735.1| conserved hypothetical protein; possible tRNA 2-methylthioadenine
           synthetase [Bacillus cereus E33L]
 gi|196030849|gb|EDX69447.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
          Length = 509

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNAL 430


>gi|312111583|ref|YP_003989899.1| MiaB family RNA modification protein [Geobacillus sp. Y4.1MC1]
 gi|336235965|ref|YP_004588581.1| MiaB family RNA modification protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|423720511|ref|ZP_17694693.1| RNA modification protein, miaB family [Geobacillus
           thermoglucosidans TNO-09.020]
 gi|311216684|gb|ADP75288.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y4.1MC1]
 gi|335362820|gb|AEH48500.1| RNA modification enzyme, MiaB family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|383366566|gb|EID43856.1| RNA modification protein, miaB family [Geobacillus
           thermoglucosidans TNO-09.020]
          Length = 523

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 188/366 (51%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG     GY  TD  E+A++ L+NTC ++  +++ +   I  
Sbjct: 82  FYIRTYGCQMNEHDTEVMAGIFMELGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 141

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K  K+      L V GC+ Q     ++ LK+ + V ++ G   I R+  ++ E     E
Sbjct: 142 LKQLKQDNPDLLLGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPHILHEAYMSKE 201

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPK R+      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 202 MVVEVWSKEGDVIENLPKARKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A G KEV L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 262 EVRHLAAQGYKEVTLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIARIRFTTSHPRDF 320

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+  + +   +   +H+PVQSGS  +L  M R+YT  ++  +V  +   +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKLMGRKYTREEYLELVRKIKAAIPDVAL 378

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
            TDII GFP ET+E F +T++L +E +F   +   + PR GTPAA+M   VP  V K+R 
Sbjct: 379 TTDIIVGFPNETEEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMVDNVPMEVKKERL 438

Query: 408 RELTSV 413
             L ++
Sbjct: 439 HRLNAL 444


>gi|30264381|ref|NP_846758.1| hypothetical protein BA_4535 [Bacillus anthracis str. Ames]
 gi|47529832|ref|YP_021181.1| hypothetical protein GBAA_4535 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187205|ref|YP_030457.1| hypothetical protein BAS4209 [Bacillus anthracis str. Sterne]
 gi|65321683|ref|ZP_00394642.1| COG0621: 2-methylthioadenine synthetase [Bacillus anthracis str.
           A2012]
 gi|165872059|ref|ZP_02216699.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167638687|ref|ZP_02396963.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170707478|ref|ZP_02897932.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|177653235|ref|ZP_02935487.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190566951|ref|ZP_03019867.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
           Tsiankovskii-I]
 gi|227817086|ref|YP_002817095.1| MiaB family RNA modification protein [Bacillus anthracis str. CDC
           684]
 gi|229600003|ref|YP_002868599.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
           A0248]
 gi|254736415|ref|ZP_05194121.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
           str. Western North America USA6153]
 gi|254750891|ref|ZP_05202930.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
           str. Vollum]
 gi|254757781|ref|ZP_05209808.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
           str. Australia 94]
 gi|386738199|ref|YP_006211380.1| MiaB family RNA modification protein [Bacillus anthracis str.
           H9401]
 gi|421506565|ref|ZP_15953488.1| MiaB family RNA modification protein [Bacillus anthracis str. UR-1]
 gi|30259039|gb|AAP28244.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|47504980|gb|AAT33656.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181132|gb|AAT56508.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|164712190|gb|EDR17727.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167513535|gb|EDR88905.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170127722|gb|EDS96595.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|172081517|gb|EDT66589.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190561942|gb|EDV15911.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
           Tsiankovskii-I]
 gi|227006018|gb|ACP15761.1| RNA modification enzyme, MiaB family [Bacillus anthracis str. CDC
           684]
 gi|229264411|gb|ACQ46048.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
           A0248]
 gi|384388051|gb|AFH85712.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
           H9401]
 gi|401823558|gb|EJT22705.1| MiaB family RNA modification protein [Bacillus anthracis str. UR-1]
          Length = 450

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/366 (33%), Positives = 194/366 (53%), Gaps = 18/366 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 RELTSV 413
             L  +
Sbjct: 357 HRLIEL 362


>gi|229093380|ref|ZP_04224485.1| hypothetical protein bcere0021_41060 [Bacillus cereus Rock3-42]
 gi|228689974|gb|EEL43777.1| hypothetical protein bcere0021_41060 [Bacillus cereus Rock3-42]
          Length = 478

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/363 (34%), Positives = 193/363 (53%), Gaps = 18/363 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 REL 410
             L
Sbjct: 357 HRL 359


>gi|357402124|ref|YP_004914049.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           cattleya NRRL 8057 = DSM 46488]
 gi|337768533|emb|CCB77246.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Streptomyces cattleya NRRL 8057 = DSM 46488]
          Length = 519

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 120/373 (32%), Positives = 191/373 (51%), Gaps = 15/373 (4%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE-ADIWLINTCTVKSPSQSAMDT 116
            +T  ++T+GC  N  DSE +AG L   GY      E+ AD+ + NTC V+  + + +  
Sbjct: 3   AKTYEVRTYGCQMNVHDSERLAGLLEDAGYVRAPGGEDTADVIVFNTCAVRENADNRLYG 62

Query: 117 LIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKG 168
            + +   K A +P   + V GC+ Q  RD  +++   V +V G   I R+  ++E     
Sbjct: 63  NLGRLAPKKAARPGMQIAVGGCLAQKDRDTIVRKAPWVDVVFGTHNIGRLPVLLERARIA 122

Query: 169 HEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
            E ++   + L A    LP  R + +   + I+VGC   CT+C     RG         +
Sbjct: 123 EEAQVEIAESLEAFPSTLPTRRESAYAAWVAISVGCNNTCTFCIVPALRGKEKDRRPGDI 182

Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
           +  V  ++ADGV EV L  ++  AYG DIG +       + A    +G   +R    +P 
Sbjct: 183 LAEVEALVADGVIEVTLLGQNVNAYGSDIG-DREAFSKLLRACGNVEGLERVRFTSPHPR 241

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
              + +  IA +   P V   LH+P+QSGSDAVL +M R Y    +  +++ +   +P  
Sbjct: 242 DFTDDV--IAAMAETPNVMHQLHMPLQSGSDAVLKSMRRSYRQDRYLGIIEKVRAAMPDA 299

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
            I+TDII GFPGET+ DF QT+++++E +F Q    Q+  RPGTPAA M  ++P  VV++
Sbjct: 300 AISTDIIVGFPGETEADFEQTLHVVREARFAQAFTFQYSKRPGTPAATMDGQIPKEVVQE 359

Query: 406 RSRELTSVFEAFT 418
           R   L ++ E  +
Sbjct: 360 RYERLVALQEEIS 372


>gi|228910147|ref|ZP_04073966.1| hypothetical protein bthur0013_42950 [Bacillus thuringiensis IBL
           200]
 gi|228849430|gb|EEM94265.1| hypothetical protein bthur0013_42950 [Bacillus thuringiensis IBL
           200]
          Length = 450

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/363 (34%), Positives = 193/363 (53%), Gaps = 18/363 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 REL 410
             L
Sbjct: 357 HRL 359


>gi|449094387|ref|YP_007426878.1| putative conserved AdoMet radical enzyme for tRNA modification
           [Bacillus subtilis XF-1]
 gi|449028302|gb|AGE63541.1| putative conserved AdoMet radical enzyme for tRNA modification
           [Bacillus subtilis XF-1]
          Length = 520

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 192/366 (52%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  T++ ++A++ L+NTC ++  +++ +   +  
Sbjct: 79  FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 138

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ KK      L V GC+ Q     +R LK+   V ++ G   I R+ E++ E     E
Sbjct: 139 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 198

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVR  K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 199 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 258

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + ++G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 259 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 317

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+  + +   +   +H+PVQSGS  VL  M R+Y    +  +V  +   +P   +
Sbjct: 318 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKAAMPNASL 375

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA+MK  VP  V K+R 
Sbjct: 376 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 435

Query: 408 RELTSV 413
           + L ++
Sbjct: 436 QRLNAL 441


>gi|329939964|ref|ZP_08289246.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           griseoaurantiacus M045]
 gi|329300790|gb|EGG44686.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           griseoaurantiacus M045]
          Length = 499

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/382 (31%), Positives = 197/382 (51%), Gaps = 26/382 (6%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQS 112
           +P  ++  ++T+GC  N  DSE ++G L   GY  A  D+  +AD+ + NTC V+  + +
Sbjct: 3   VPAPKSYEIRTYGCQMNVHDSERLSGLLEDAGYVRAPEDSDGDADVVVFNTCAVRENADN 62

Query: 113 AMDTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEE 164
            +   + +   + A +P   + V GC+ Q  RD  +K+   V +V G   I ++  ++E 
Sbjct: 63  RLYGNLGRLAPRKASRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLER 122

Query: 165 TLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
                E ++   + L A    LP  R + +   + I+VGC   CT+C     RG      
Sbjct: 123 ARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRR 182

Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRI 280
              ++  V  ++A+GV E+ L  ++  AYG DIG       LL A       +   + R+
Sbjct: 183 PGDVLAEVEALVAEGVSEITLLGQNVNAYGSDIGDREAFSKLLRAC-----GNIEGLERV 237

Query: 281 GMTNP---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
             T+P    F  + ++ +AE    P V   LH+P+QSGSD VL AM R Y    +  +++
Sbjct: 238 RFTSPHPRDFTDDVIEAMAET---PNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIE 294

Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK- 396
            +   +P   I TDII GFPGET+EDF QT+++++E +F Q    Q+  RPGTPAA M+ 
Sbjct: 295 KVRAAIPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAATMED 354

Query: 397 KVPSAVVKKRSRELTSVFEAFT 418
           ++P  VV+ R   L ++ E  +
Sbjct: 355 QIPKKVVQARYERLVALQEEIS 376


>gi|228941477|ref|ZP_04104027.1| hypothetical protein bthur0008_41150 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974407|ref|ZP_04134975.1| hypothetical protein bthur0003_41610 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981002|ref|ZP_04141304.1| hypothetical protein bthur0002_41640 [Bacillus thuringiensis Bt407]
 gi|384188384|ref|YP_005574280.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar chinensis
           CT-43]
 gi|410676699|ref|YP_006929070.1| putative methylthiotransferase YqeV [Bacillus thuringiensis Bt407]
 gi|452200776|ref|YP_007480857.1| MiaB family protein [Bacillus thuringiensis serovar thuringiensis
           str. IS5056]
 gi|228778662|gb|EEM26927.1| hypothetical protein bthur0002_41640 [Bacillus thuringiensis Bt407]
 gi|228785243|gb|EEM33254.1| hypothetical protein bthur0003_41610 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818127|gb|EEM64202.1| hypothetical protein bthur0008_41150 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326942093|gb|AEA17989.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar chinensis
           CT-43]
 gi|409175828|gb|AFV20133.1| putative methylthiotransferase YqeV [Bacillus thuringiensis Bt407]
 gi|452106169|gb|AGG03109.1| MiaB family protein [Bacillus thuringiensis serovar thuringiensis
           str. IS5056]
          Length = 450

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 131/394 (33%), Positives = 201/394 (51%), Gaps = 20/394 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADG 439
             L  +            EG V  I   E   DG
Sbjct: 357 HRLIELSNQLAKEYASAFEGEVLEIIPEEQFKDG 390


>gi|47567875|ref|ZP_00238583.1| MiaB-like tRNA modifying enzyme [Bacillus cereus G9241]
 gi|49478605|ref|YP_038365.1| hypothetical protein BT9727_4047 [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141194|ref|YP_085636.1| hypothetical protein BCZK4057 [Bacillus cereus E33L]
 gi|167634590|ref|ZP_02392910.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170687423|ref|ZP_02878640.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|196034518|ref|ZP_03101927.1| RNA modification enzyme, MiaB family [Bacillus cereus W]
 gi|196039288|ref|ZP_03106594.1| RNA modification enzyme, MiaB family [Bacillus cereus NVH0597-99]
 gi|225866291|ref|YP_002751669.1| RNA modification enzyme, MiaB family [Bacillus cereus 03BB102]
 gi|228929354|ref|ZP_04092378.1| hypothetical protein bthur0010_40400 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935630|ref|ZP_04098444.1| hypothetical protein bthur0009_40760 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228948023|ref|ZP_04110308.1| hypothetical protein bthur0007_41500 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228987561|ref|ZP_04147679.1| hypothetical protein bthur0001_42320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229031959|ref|ZP_04187945.1| hypothetical protein bcere0028_40050 [Bacillus cereus AH1271]
 gi|229123849|ref|ZP_04253042.1| hypothetical protein bcere0016_41350 [Bacillus cereus 95/8201]
 gi|229157924|ref|ZP_04285997.1| hypothetical protein bcere0010_41050 [Bacillus cereus ATCC 4342]
 gi|254684067|ref|ZP_05147927.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
           str. CNEVA-9066]
 gi|254721901|ref|ZP_05183690.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
           str. A1055]
 gi|254741453|ref|ZP_05199140.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
           str. Kruger B]
 gi|300118700|ref|ZP_07056428.1| RNA modification enzyme, MiaB family protein [Bacillus cereus SJ1]
 gi|421638385|ref|ZP_16078981.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
           str. BF1]
 gi|423400843|ref|ZP_17378016.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG2X1-2]
 gi|423478452|ref|ZP_17455167.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG6X1-1]
 gi|47555552|gb|EAL13895.1| MiaB-like tRNA modifying enzyme [Bacillus cereus G9241]
 gi|49330161|gb|AAT60807.1| conserved hypothetical protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974663|gb|AAU16213.1| conserved hypothetical protein [Bacillus cereus E33L]
 gi|167530042|gb|EDR92777.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170668618|gb|EDT19364.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|195993060|gb|EDX57019.1| RNA modification enzyme, MiaB family [Bacillus cereus W]
 gi|196029915|gb|EDX68516.1| RNA modification enzyme, MiaB family [Bacillus cereus NVH0597-99]
 gi|225790885|gb|ACO31102.1| RNA modification enzyme, MiaB family [Bacillus cereus 03BB102]
 gi|228625532|gb|EEK82286.1| hypothetical protein bcere0010_41050 [Bacillus cereus ATCC 4342]
 gi|228659563|gb|EEL15210.1| hypothetical protein bcere0016_41350 [Bacillus cereus 95/8201]
 gi|228729349|gb|EEL80340.1| hypothetical protein bcere0028_40050 [Bacillus cereus AH1271]
 gi|228772159|gb|EEM20607.1| hypothetical protein bthur0001_42320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228811609|gb|EEM57945.1| hypothetical protein bthur0007_41500 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228823990|gb|EEM69808.1| hypothetical protein bthur0009_40760 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830305|gb|EEM75918.1| hypothetical protein bthur0010_40400 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|298723949|gb|EFI64663.1| RNA modification enzyme, MiaB family protein [Bacillus cereus SJ1]
 gi|401653833|gb|EJS71376.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG2X1-2]
 gi|402428614|gb|EJV60711.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG6X1-1]
 gi|403394811|gb|EJY92051.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
           str. BF1]
          Length = 450

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/363 (34%), Positives = 193/363 (53%), Gaps = 18/363 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 REL 410
             L
Sbjct: 357 HRL 359


>gi|269797930|ref|YP_003311830.1| MiaB family RNA modification protein [Veillonella parvula DSM 2008]
 gi|269094559|gb|ACZ24550.1| RNA modification enzyme, MiaB family [Veillonella parvula DSM 2008]
          Length = 437

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 202/385 (52%), Gaps = 23/385 (5%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           ++ Y+ T+GC  N +DSE ++ QL + GY  T+N E AD+ L+NTC V+  +++ +   I
Sbjct: 2   KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61

Query: 119 AKCKSAK---KPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            + K  K   K L++A  GC+ Q ++    K    + IV G   I  + E++EE   GH 
Sbjct: 62  GELKRLKRNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQHGHT 121

Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            ++   +    LP L+        F   +PI  GC   CTYC   H RG   S  VE++V
Sbjct: 122 HQISVDMDNTVLPELEAKP--NGSFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
             V  +   G KE+ L  ++  +YG D   G +   L++A+   +P  G   +R   ++P
Sbjct: 180 KEVTDLGVKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDALDG-IP--GIERIRYMTSHP 236

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             + + +  I  + R   + + LH+P+QSGS+ +L  MNR YT+  ++ ++    E +  
Sbjct: 237 QDMSKSM--IDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCREKIKD 294

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
           + + TDII GFPGET++DF  T+ L+K+ ++   +   +  R GTPAA M  ++P  + +
Sbjct: 295 VVVTTDIIVGFPGETEDDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQIPEEIKR 354

Query: 405 KRSRELTSVFEAFTPYLG--MEGRV 427
            R + L  V    +  L   MEG+V
Sbjct: 355 VRLQTLMDVQNEISYELNKPMEGQV 379


>gi|118479478|ref|YP_896629.1| 2-methylthioadenine synthetase [Bacillus thuringiensis str. Al
           Hakam]
 gi|229186550|ref|ZP_04313711.1| hypothetical protein bcere0004_40930 [Bacillus cereus BGSC 6E1]
 gi|376268207|ref|YP_005120919.1| MiaB family protein, possibly involved in tRNA or rRNA modification
           [Bacillus cereus F837/76]
 gi|118418703|gb|ABK87122.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|228596809|gb|EEK54468.1| hypothetical protein bcere0004_40930 [Bacillus cereus BGSC 6E1]
 gi|364514007|gb|AEW57406.1| MiaB family protein, possibly involved in tRNA or rRNA modification
           [Bacillus cereus F837/76]
          Length = 450

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/363 (34%), Positives = 193/363 (53%), Gaps = 18/363 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 REL 410
             L
Sbjct: 357 HRL 359


>gi|373469162|ref|ZP_09560371.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
           oral taxon 082 str. F0431]
 gi|371765044|gb|EHO53408.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
           oral taxon 082 str. F0431]
          Length = 475

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 190/361 (52%), Gaps = 20/361 (5%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           TFGC  N  DSE ++G LS  GY   +N E+AD+ L NTCTV+  +   +   + + K  
Sbjct: 41  TFGCQMNARDSEKLSGILSGIGYLEAENEEDADLVLFNTCTVRENANDRLYGRVGQLKKN 100

Query: 125 KKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE--VR 172
           K+      + + GC+ Q + ++++++        + G   I ++ E++ + LK  +  V 
Sbjct: 101 KEKNPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFGTHNIYKLAEILFDHLKTKKQVVD 160

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           ++    +    LP  R+  F   + I  GC   C+YC   + RG   S   E ++  ++ 
Sbjct: 161 VMESADMIVEKLPNKRQFAFKSGVNITFGCNNFCSYCIVPYVRGRERSRKPEEIIDEIKG 220

Query: 233 VIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           ++ADGVKEV L  ++  +YG+  D   N  +LL+ +      +G   LR    +P  + +
Sbjct: 221 LVADGVKEVMLLGQNVNSYGKGLDEKTNFAMLLDEVS---KIEGLERLRFMTPHPKDLSD 277

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
            + E+ +  +  C +  LH+P+QSGS ++L  MNR YT   +  +V  +   +P + + T
Sbjct: 278 EVIEVMKKNKKICKH--LHLPLQSGSSSILKKMNRVYTKEGYLDLVRRIKAAIPDISLTT 335

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
           DII GFPGE++EDF  T++++KE ++       +  R GTPAA+M+ ++   V+K R   
Sbjct: 336 DIIVGFPGESEEDFLDTLDVVKEVRYDSAFTFIYSKRSGTPAAKMEDQIDPKVIKDRFDR 395

Query: 410 L 410
           L
Sbjct: 396 L 396


>gi|30022389|ref|NP_834020.1| Fe-S oxidoreductase [Bacillus cereus ATCC 14579]
 gi|218232497|ref|YP_002369119.1| hypothetical protein BCB4264_A4429 [Bacillus cereus B4264]
 gi|218899478|ref|YP_002447889.1| MiaB family RNA modification protein [Bacillus cereus G9842]
 gi|228902835|ref|ZP_04066979.1| hypothetical protein bthur0014_40060 [Bacillus thuringiensis IBL
           4222]
 gi|228954596|ref|ZP_04116620.1| hypothetical protein bthur0006_39650 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229071815|ref|ZP_04205029.1| hypothetical protein bcere0025_39840 [Bacillus cereus F65185]
 gi|229081572|ref|ZP_04214069.1| hypothetical protein bcere0023_42040 [Bacillus cereus Rock4-2]
 gi|229129590|ref|ZP_04258559.1| hypothetical protein bcere0015_40320 [Bacillus cereus BDRD-Cer4]
 gi|229152512|ref|ZP_04280703.1| hypothetical protein bcere0011_40490 [Bacillus cereus m1550]
 gi|423358653|ref|ZP_17336156.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD022]
 gi|423385812|ref|ZP_17363068.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG1X1-2]
 gi|423426443|ref|ZP_17403474.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG3X2-2]
 gi|423437756|ref|ZP_17414737.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG4X12-1]
 gi|423503004|ref|ZP_17479596.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           HD73]
 gi|423527831|ref|ZP_17504276.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           HuB1-1]
 gi|423561222|ref|ZP_17537498.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           MSX-A1]
 gi|434377478|ref|YP_006612122.1| MiaB family RNA modification protein [Bacillus thuringiensis
           HD-789]
 gi|449091273|ref|YP_007423714.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar kurstaki str.
           HD73]
 gi|29897947|gb|AAP11221.1| Fe-S oxidoreductase [Bacillus cereus ATCC 14579]
 gi|218160454|gb|ACK60446.1| conserved hypothetical protein [Bacillus cereus B4264]
 gi|218544457|gb|ACK96851.1| RNA modification enzyme, MiaB family [Bacillus cereus G9842]
 gi|228630943|gb|EEK87581.1| hypothetical protein bcere0011_40490 [Bacillus cereus m1550]
 gi|228653858|gb|EEL09727.1| hypothetical protein bcere0015_40320 [Bacillus cereus BDRD-Cer4]
 gi|228701728|gb|EEL54217.1| hypothetical protein bcere0023_42040 [Bacillus cereus Rock4-2]
 gi|228711294|gb|EEL63255.1| hypothetical protein bcere0025_39840 [Bacillus cereus F65185]
 gi|228805042|gb|EEM51637.1| hypothetical protein bthur0006_39650 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228856791|gb|EEN01307.1| hypothetical protein bthur0014_40060 [Bacillus thuringiensis IBL
           4222]
 gi|401084525|gb|EJP92771.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD022]
 gi|401111190|gb|EJQ19089.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG3X2-2]
 gi|401120911|gb|EJQ28707.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG4X12-1]
 gi|401201479|gb|EJR08344.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           MSX-A1]
 gi|401635868|gb|EJS53623.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG1X1-2]
 gi|401876035|gb|AFQ28202.1| MiaB family RNA modification protein [Bacillus thuringiensis
           HD-789]
 gi|402451494|gb|EJV83313.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           HuB1-1]
 gi|402459225|gb|EJV90962.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           HD73]
 gi|449025030|gb|AGE80193.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar kurstaki str.
           HD73]
          Length = 450

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 131/394 (33%), Positives = 201/394 (51%), Gaps = 20/394 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADG 439
             L  +            EG V  I   E   DG
Sbjct: 357 HRLIELSNQLAKEYASAFEGEVLEIIPEEQFKDG 390


>gi|228960578|ref|ZP_04122226.1| hypothetical protein bthur0005_40430 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|296504804|ref|YP_003666504.1| Fe-S oxidoreductase [Bacillus thuringiensis BMB171]
 gi|423585210|ref|ZP_17561297.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD045]
 gi|423631033|ref|ZP_17606780.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD154]
 gi|423640609|ref|ZP_17616227.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD166]
 gi|423650175|ref|ZP_17625745.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD169]
 gi|423657266|ref|ZP_17632565.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD200]
 gi|228799091|gb|EEM46060.1| hypothetical protein bthur0005_40430 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|296325856|gb|ADH08784.1| Fe-S oxidoreductase [Bacillus thuringiensis BMB171]
 gi|401233853|gb|EJR40339.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD045]
 gi|401264400|gb|EJR70512.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD154]
 gi|401279670|gb|EJR85592.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD166]
 gi|401282593|gb|EJR88492.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD169]
 gi|401290009|gb|EJR95713.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD200]
          Length = 450

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/363 (34%), Positives = 193/363 (53%), Gaps = 18/363 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 REL 410
             L
Sbjct: 357 HRL 359


>gi|423669894|ref|ZP_17644923.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VDM034]
 gi|423673900|ref|ZP_17648839.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VDM062]
 gi|401299021|gb|EJS04621.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VDM034]
 gi|401310266|gb|EJS15591.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VDM062]
          Length = 450

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 130/394 (32%), Positives = 202/394 (51%), Gaps = 20/394 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  +++D+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V  +R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNERV 356

Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADG 439
             L  +            EG V  I   E   DG
Sbjct: 357 HRLIELSNQLAKEYASRFEGEVLEIIPEETFKDG 390


>gi|229174985|ref|ZP_04302504.1| hypothetical protein bcere0006_40680 [Bacillus cereus MM3]
 gi|228608446|gb|EEK65749.1| hypothetical protein bcere0006_40680 [Bacillus cereus MM3]
          Length = 450

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/363 (34%), Positives = 193/363 (53%), Gaps = 18/363 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 REL 410
             L
Sbjct: 357 HRL 359


>gi|332799055|ref|YP_004460554.1| MiaB-like tRNA modifying protein [Tepidanaerobacter acetatoxydans
           Re1]
 gi|332696790|gb|AEE91247.1| MiaB-like tRNA modifying enzyme [Tepidanaerobacter acetatoxydans
           Re1]
          Length = 435

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 120/365 (32%), Positives = 189/365 (51%), Gaps = 21/365 (5%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC--K 122
           T GC  NQ +S  +A      GY + D   +AD+++INTC V + S      +I K    
Sbjct: 8   TLGCKVNQYESAAIAELFENKGYEIVDFDTKADVYVINTCNVTNESARKSRQIIRKAIRN 67

Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHE-----VRLLH 175
           +    + V GC  Q +  ++  ++GVS+ VG +   R+V++VE+  +  +       ++ 
Sbjct: 68  NPSAKVAVVGCYVQMALHEVLNIKGVSVAVGTKDRHRIVDLVEKAEQCSKPIVTVGNIMK 127

Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
           ++    + L K  R K    L I  GC   C+YC   +ARG + S ++++++   +++  
Sbjct: 128 QQTFEEIAL-KGHRQKTRAFLKIQDGCNMFCSYCIIPYARGPVRSRSIDNIIDEAQSLAK 186

Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
           DG KE+ L+    G YGRD       LL+ I      +G   +R+        +E ++  
Sbjct: 187 DGFKEIVLTGIHLGLYGRDFKDENIHLLDVISRIADIEGIERIRLSS------IEAMELT 240

Query: 296 AEVLRHPC-VYSF---LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
            E L+  C +  F    HVP+QSG D VL  MNR YT  +FR  +D + +L+P   I TD
Sbjct: 241 DEFLKSLCGIKKFCHHFHVPLQSGCDTVLRRMNRRYTTDEFRDRIDYIRQLMPDASITTD 300

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSREL 410
           +I GFPGET+E+F QT N IKE  F ++H+  F PR GT A  M  ++  +V  +RS  L
Sbjct: 301 VIVGFPGETEEEFKQTENFIKEINFSRLHVFPFSPRKGTLADDMPNQIEKSVKVERSHRL 360

Query: 411 TSVFE 415
            S+ E
Sbjct: 361 ISLSE 365


>gi|303233246|ref|ZP_07319918.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium vaginae
           PB189-T1-4]
 gi|302480636|gb|EFL43724.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium vaginae
           PB189-T1-4]
          Length = 459

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 125/373 (33%), Positives = 194/373 (52%), Gaps = 22/373 (5%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T  +KTFGC  N  DSE +AG L   G       EEADI +  TC+V+  + + +   +
Sbjct: 14  KTYLIKTFGCQMNLHDSERVAGLLDDCGCNEVQTVEEADIVVFMTCSVREKADTHLYGAV 73

Query: 119 AKC------KSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK-- 167
           +           K+ + V GC+ Q  G+R  K +  V +V G   +  V E++ E  +  
Sbjct: 74  SNLVVVPAPPCGKRVIAVGGCIAQRDGARLKKHIPNVDVVFGTSALASVPELLCEAFESD 133

Query: 168 GHEVRL--LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
           G EV +  + + +  + +LP  R   F   +PI  GC   CT+C     RG   S   E 
Sbjct: 134 GSEVFVDTVEKNRGFSCELPSKREQYFHAWVPIMTGCNNFCTFCIVPLVRGRERSRVFER 193

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
           +V  V  ++ DGV+EV L  ++  +YGRD+    P   + ++ E+   G   +R   +NP
Sbjct: 194 VVAEVARLVDDGVREVTLLGQNVNSYGRDL-YGKP-RFSELLREVGKTGIERIRFTSSNP 251

Query: 286 PFILEH--LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
              L H  ++ +AE    P V   LH+ VQSGS+ +L AM+R Y    + +V+  L E +
Sbjct: 252 K-DLSHDTIRAMAET---PNVMPQLHLAVQSGSNRILRAMHRAYNREKYLSVIAELKEAI 307

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 402
           PG+ ++TDII GFPGET+EDF QT++L+ E  +   +   +  RPGTPAA++    P  V
Sbjct: 308 PGIALSTDIIVGFPGETEEDFLQTMSLVDEVGYASAYTFIYSKRPGTPAAKIVDTTPHEV 367

Query: 403 VKKRSRELTSVFE 415
           +++R   LT   E
Sbjct: 368 IQERFERLTKRIE 380


>gi|433637940|ref|YP_007283700.1| MiaB-like tRNA modifying enzyme [Halovivax ruber XH-70]
 gi|433289744|gb|AGB15567.1| MiaB-like tRNA modifying enzyme [Halovivax ruber XH-70]
          Length = 449

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 132/418 (31%), Positives = 210/418 (50%), Gaps = 27/418 (6%)

Query: 34  NKNKPRLHDNHLSKTGSLSPKIPGTET----IYMKTFGCSHNQSDSEYMAGQLSAFGYAL 89
           ++ +PR      ++T    P  P   T     +++T+GC+ N+ +S  +  +L   G+  
Sbjct: 5   SRTQPRGALCEQAETSGFWPAGPQYPTNMARYHIETYGCTSNRGESRQIERRLRDAGHHR 64

Query: 90  TDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSI 149
            D  +EAD+ ++NTCTV   ++  M     +       L V GC+      L + E    
Sbjct: 65  VDGVDEADVAILNTCTVVEKTERNMLRRAEELADETADLYVTGCMA-----LAQGEEFVN 119

Query: 150 VGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 209
            GV       + V E +   E         P LD         V ILPI  GC+  C+YC
Sbjct: 120 AGVDADVLHWDEVPEAVTNGECPTTTPDAEPILD-------GVVGILPIARGCMSDCSYC 172

Query: 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV-NLPILLNAIVA 268
            TKHA G + S ++E  V + R ++  G KE+ ++ +DTG YG D G   L  LL  I A
Sbjct: 173 ITKHATGKIDSPSIEENVEKARALVHAGAKELRITGQDTGVYGWDDGERKLHRLLERICA 232

Query: 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREY 327
               +G   +RIGM NP  +    +++A V   +  +Y FLH PVQSGSD VL  M R++
Sbjct: 233 ---IEGDFRVRIGMANPKGVHGIREKLASVFADNEELYDFLHAPVQSGSDDVLGDMRRQH 289

Query: 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
            + ++  VV+T  + +    ++TD I GFP ETD D  Q++ L++E +  ++++++F  R
Sbjct: 290 QVEEYVEVVETFDDALEYWTLSTDFIVGFPTETDHDHAQSMALLRETRPEKINVTRFSKR 349

Query: 388 PGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEGRVERIWITEIAADGI 440
           PGT AA MK +   + K+RS E++      V EA+   +G E R + + + E   D +
Sbjct: 350 PGTDAADMKGLGGTIKKERSSEMSEVKRELVREAYADMVG-ETREDVLVVEEGTGDSV 406


>gi|402564224|ref|YP_006606948.1| MiaB family RNA modification protein [Bacillus thuringiensis
           HD-771]
 gi|401792876|gb|AFQ18915.1| MiaB family RNA modification protein [Bacillus thuringiensis
           HD-771]
          Length = 450

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 131/394 (33%), Positives = 201/394 (51%), Gaps = 20/394 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINVV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADG 439
             L  +            EG V  I   E   DG
Sbjct: 357 HRLIELSNQLAKEYASAFEGEVLEIIPEEQFKDG 390


>gi|317050742|ref|YP_004111858.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfurispirillum
           indicum S5]
 gi|316945826|gb|ADU65302.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfurispirillum
           indicum S5]
          Length = 441

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 206/382 (53%), Gaps = 28/382 (7%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
           T+  ++KT+GC  N  DSE + G L A GY +  + +EAD+ + NTC+V+  ++  + + 
Sbjct: 2   TQRAFIKTYGCQMNSGDSERIRGILVAHGYEMVSDVKEADLAIFNTCSVREKAEQKVFSD 61

Query: 118 IAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
           I + +  K+      + + GC+PQ  R+  L++   + IV GV  I  +++ + E  +G 
Sbjct: 62  IGRLRGQKERHPGFRIALCGCIPQVQREGILRKNPLIDIVFGVNNISGLMDFIAEAQQGK 121

Query: 170 EVRLLHRKKLPA-LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
               +  +   +  D+P  R +     + I  GC   C+YC   + RG   S +  S++ 
Sbjct: 122 RTCRVEDEFFESEYDMPSQREDAMKAFVTIMNGCDNYCSYCIVPYTRGRERSRSAPSILA 181

Query: 229 RVRTVIADGVKEVWLSSEDTGAY-GRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTN 284
            +R ++ DGV+EV L  ++  +Y  +D     V+ P LL+ +V ++P     + RI    
Sbjct: 182 EIRQLVDDGVREVTLLGQNVNSYRWQDKAGALVDFPQLLH-LVHDIPE----LQRI---- 232

Query: 285 PPFILEHLKEIAEVLRH----PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
             F+  H K+ +E +      P V  +LH+P+Q+GS+ +L  MNR YT  ++   +  L 
Sbjct: 233 -RFVTSHPKDFSEAMMEAMALPRVCKYLHLPIQAGSNRILKLMNRGYTREEYLAKIARLK 291

Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVP 399
           E +PG+ +++D + GFPGET+EDF QT++++++ ++ Q+    +  RP T AA M  +VP
Sbjct: 292 ERIPGVALSSDFLVGFPGETEEDFLQTMDILEQVEYKQIFGFNYSVRPETKAATMADQVP 351

Query: 400 SAVVKKRSRELTSVFEAFTPYL 421
             V+ +R   L +  ++ +  L
Sbjct: 352 FEVMNERLNRLFAAQQSISHRL 373


>gi|76802239|ref|YP_327247.1| hypothetical protein NP3198A [Natronomonas pharaonis DSM 2160]
 gi|76558104|emb|CAI49690.1| MiaB-like tRNA modifying enzyme [Natronomonas pharaonis DSM 2160]
          Length = 414

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 184/359 (51%), Gaps = 25/359 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T +++T+GC+ N+ +S  +  +L   G+   D  E+AD+ ++NTCTV   ++  M     
Sbjct: 3   TYHIETYGCTSNRGESRQIERKLRDAGHYRVDTPEKADVAILNTCTVVEKTERNMLRRAE 62

Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV---EVVEETLKGHEVRLLHR 176
           + ++    L+V GC+     D              ID  V   E V   +   E      
Sbjct: 63  ELEAETADLIVTGCMALAQGD----------EFGDIDAQVLHWEDVPTAVTNGECPTTTP 112

Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
              P LD         V ILPI  GC+  C+YC TK A G + S  V   V + R ++  
Sbjct: 113 DAEPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPPVAENVEKARALVHA 165

Query: 237 GVKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
           G KE+ ++ +DTG YG D G   LP LL+ I      DG   +R+GM NP  +    +E+
Sbjct: 166 GAKELRITGQDTGVYGWDTGERKLPELLDRIC---DIDGEFRVRLGMANPGGVHGIHEEL 222

Query: 296 AEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           A+V   +  +Y+F+H PVQSGSD VL  M R++ +  F+ +VD   E +    ++TD I 
Sbjct: 223 ADVFAENEKLYNFIHAPVQSGSDDVLEDMRRQHRVEKFKDIVDAFDERLDHWTLSTDFIV 282

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           GFP E + D   ++ L+ E +  ++++++F  RPGT AA MK +   + K+RS+ +T +
Sbjct: 283 GFPTEDEADHELSMELLAEVRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKAMTDL 341


>gi|417908008|ref|ZP_12551775.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
           VCU116]
 gi|341595095|gb|EGS37773.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
           VCU116]
          Length = 514

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/381 (30%), Positives = 196/381 (51%), Gaps = 21/381 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L A GY+ T +  +AD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILKALGYSATTDINQADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V ++ G   I  + E++EE    K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G +E+ L  ++  +YG+DI  +L   L  ++ ++       +R   ++P  
Sbjct: 249 NEVRELAREGYQEITLLGQNVNSYGKDIE-DLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  +     +   +H+PVQSG++AVL  M R+YT   +  +V+ +   +P + 
Sbjct: 308 FTDRMIEV--IANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIKTAIPNIA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T++L  E +F   +   +  R GTPAA+MK  VP+ V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKER 425

Query: 407 SRELTSVF-----EAFTPYLG 422
            + L         +A + Y+G
Sbjct: 426 LQRLNKKVGEYSQKAMSKYVG 446


>gi|428279299|ref|YP_005561034.1| hypothetical protein BSNT_02749 [Bacillus subtilis subsp. natto
           BEST195]
 gi|291484256|dbj|BAI85331.1| hypothetical protein BSNT_02749 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 509

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 192/366 (52%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  T++ ++A++ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ KK      L V GC+ Q     +R LK+   V ++ G   I R+ E++ E     E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVR  K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + ++G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+  + +   +   +H+PVQSGS  VL  M R+Y    +  +V  +   +P   +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKTAMPNASL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNAL 430


>gi|423521831|ref|ZP_17498304.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           HuA4-10]
 gi|401176493|gb|EJQ83688.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           HuA4-10]
          Length = 450

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 130/394 (32%), Positives = 202/394 (51%), Gaps = 20/394 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  +++D+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + A++   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAKVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADG 439
             L  +          G EG V  I   E   DG
Sbjct: 357 HRLIELSNQLAKEYASGFEGEVLEIIPEETFKDG 390


>gi|256827172|ref|YP_003151131.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Cryptobacterium curtum DSM 15641]
 gi|256583315|gb|ACU94449.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Cryptobacterium curtum DSM 15641]
          Length = 448

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 193/371 (52%), Gaps = 23/371 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  + TFGC  N+ DSE +AG L + G     +  EAD  +  TC V+  +   +   +A
Sbjct: 6   TFSITTFGCQMNKHDSERIAGLLESLGSIAVSSPAEADFSIFMTCCVREKADERLMGQVA 65

Query: 120 KCKS---------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
             K+          ++ + + GC+ Q  G + L +L+ V +V G   ++ + +++E  ++
Sbjct: 66  TMKNDAPRKGSPFGRRFVAIGGCIGQRDGEKLLTQLDNVDVVFGTHNMETLPQLLESAIE 125

Query: 168 GHEVR--LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
               R  ++  +     +LP+ R + +   LPI VGC   CT+C   + RG   S  ++ 
Sbjct: 126 KGSRRAEIIDGRAEFHDELPEDREHPWAAWLPITVGCNNFCTFCIVPYVRGREISRPLDE 185

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMT 283
           +  + R  +  GVKE+ L  ++  +YGRD+        +L+A+ A     G   +R   +
Sbjct: 186 IADQARAYVQQGVKEITLLGQNVNSYGRDLYGSPRFDAVLDAVAAS----GIERIRFATS 241

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           +P  + + + E    L  P +   LH+P QSGS+ +L+AMNR YT+  +  +++ L  + 
Sbjct: 242 HPKDLTDGVIERFATL--PNLMPALHLPAQSGSNRILAAMNRRYTIEHYEGLIEKLRVVR 299

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 402
           P + ++TDII GFPGET++DF QT  L+K   + QV    +  R GTPAAR+    P +V
Sbjct: 300 PYIALSTDIIVGFPGETEDDFEQTCELVKRVGYNQVFTFIYSRRDGTPAARLPDDTPRSV 359

Query: 403 VKKRSRELTSV 413
           +++R   L S+
Sbjct: 360 IQERFDRLVSI 370


>gi|119489699|ref|ZP_01622458.1| tRNA-i(6)A37 modification enzyme MiaB [Lyngbya sp. PCC 8106]
 gi|119454436|gb|EAW35585.1| tRNA-i(6)A37 modification enzyme MiaB [Lyngbya sp. PCC 8106]
          Length = 452

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 124/372 (33%), Positives = 199/372 (53%), Gaps = 27/372 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G   T +  EAD+ L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEEMGLLFTADPNEADVVLYNTCTIRDNAEHKVYSYLGRQ 68

Query: 122 --KSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
             +  K+P   L++AGCV Q  G   L+ +  + +V G Q  +R+ E++E+  +G++V  
Sbjct: 69  AKRKHKQPNLTLILAGCVAQQEGQTLLRRVPELDLVMGPQHANRLQELLEQVDEGNQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ K RR+  V    +NV  GC   CTYC   + RG   S T E++   + 
Sbjct: 129 TEPIHI-VEDITKPRRDSNVTAW-VNVIYGCNERCTYCVVPNVRGIEQSRTPEAIRSEME 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMT 283
            +   G KE+ L  ++  AYGRD+  + P          L + V ++P  G   LR   +
Sbjct: 187 ELGRLGYKEITLLGQNIDAYGRDLPGSTPEGRHKHTLTDLLSFVHDVP--GIERLRFATS 244

Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
           +P +  E L K  AE+   P V    H+P QSG + +L AM+R YT   +R +++T+ E 
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNQILKAMSRGYTHEKYRRIINTVREY 301

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 401
           +P   I+ D I GFPGET+E F  T+ L+ +  F  ++ + + PRPGTPAA  + +VP  
Sbjct: 302 MPDASISADAIVGFPGETEEQFENTLKLVDDIGFDLLNTAAYSPRPGTPAALWENQVPDD 361

Query: 402 VVKKRSRELTSV 413
           V   R ++L  +
Sbjct: 362 VKADRLQQLNHL 373


>gi|336114420|ref|YP_004569187.1| MiaB family RNA modification protein [Bacillus coagulans 2-6]
 gi|335367850|gb|AEH53801.1| RNA modification enzyme, MiaB family [Bacillus coagulans 2-6]
          Length = 450

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 183/348 (52%), Gaps = 17/348 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  TD    AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQAGYERTDFETNADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 170
           +   ++    + V GC  Q S  ++ E+ GV +V G Q   +++  +E+ LK  +     
Sbjct: 63  RAVRQNPDAVVCVTGCYAQTSPGEILEIPGVDVVVGTQDRTKMLGYIEQYLKERKPVNAV 122

Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
             ++  +    +++P    ++    L I  GC   CT+C    ARG + S   E ++ + 
Sbjct: 123 KNIMKNRVYEEMEVPYFT-DRHRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVIAQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG+D+   NL +LL  +  E    G   +RI       + 
Sbjct: 182 QQLVDAGYKELVLTGIHTGGYGQDLKDYNLAMLLRDL--EEKVQGLKRVRISSIEASQLT 239

Query: 290 EHLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+  V++H   V   +HVP+QSGSD VL  M R+YT+  F   +  L E +PG+ +
Sbjct: 240 D---EVIGVIKHSKVVVRHMHVPIQSGSDTVLKRMRRKYTMDQFAERITKLKEALPGLAL 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396
            +D+I GFPGET+E+F +T N IKE++F ++H+  + PR GTPAARMK
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHRFAELHVFPYSPRTGTPAARMK 344


>gi|384428234|ref|YP_005637593.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Xanthomonas campestris
           pv. raphani 756C]
 gi|341937336|gb|AEL07475.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Xanthomonas campestris
           pv. raphani 756C]
          Length = 485

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 135/403 (33%), Positives = 213/403 (52%), Gaps = 44/403 (10%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           +Y+KT GC  N+ DS  MA  L+A  G  LTDN E+AD+ L+NTC+++  +Q  + + + 
Sbjct: 39  LYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKAQEKVFSQLG 98

Query: 120 KCKSAK---KPLV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVE---ETLKG 168
           + K+ K   KP++  V GCV   +G   +K    V +V G Q + R+ E++    E+ K 
Sbjct: 99  RWKALKAGGKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARRESGKS 158

Query: 169 H------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
                  E+    R   P  D P    + FV I+    GC   C++C   + RG   S  
Sbjct: 159 QVDISFPEIEKFDRLPEPRADGP----SAFVSIME---GCSKYCSFCVVPYTRGEEVSRP 211

Query: 223 VESLVGRVRTVIADGVKEVWLSSEDT----GAYGRDIG-----VNLPILLNAIVAELPPD 273
            E ++  V  + A GV+E+ L  ++     GAYG D G      +L +L+  I A++  D
Sbjct: 212 FEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGEPAQYADLGLLIRTI-AQI--D 268

Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 332
           G   +R   ++P   LE    + +  R  P + ++LH+PVQ+GSD +LSAM R YT  +F
Sbjct: 269 GIGRIRFTTSHP---LEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTALEF 325

Query: 333 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392
           ++ +  L  + PG+ I++D I GFPGETD DF++T+ LI++  F Q     +  RPGTPA
Sbjct: 326 KSKIRKLRAVRPGISISSDFIVGFPGETDADFDKTMKLIEDVGFDQSFSFIYSRRPGTPA 385

Query: 393 ARMK-KVPSAVVKKRSRELTSVFEAFTPYLG--MEGRVERIWI 432
           + ++   P AV + R   L +   A    +   M G V+R+ +
Sbjct: 386 SDLEDDTPDAVKQARLARLQAHINAHAAGISQRMVGSVQRVLV 428


>gi|347753703|ref|YP_004861268.1| MiaB family RNA modification protein [Bacillus coagulans 36D1]
 gi|347586221|gb|AEP02488.1| RNA modification enzyme, MiaB family [Bacillus coagulans 36D1]
          Length = 515

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 192/371 (51%), Gaps = 16/371 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG     GY  T+  E+AD+ L+NTC ++  +++ +   I  
Sbjct: 71  FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTETVEDADVVLLNTCAIRENAENKVFGEIGH 130

Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 168
            K  K  KP   + V GC+ Q     ++ L++   V +V G   I R+  +++E    K 
Sbjct: 131 LKPLKTEKPDMLIGVCGCMSQEESVVNKILQKHPHVDMVFGTHNIHRLPHILKEAYMSKA 190

Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++      LPKVR+      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 191 MVVEVWSKEGDVIESLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A G KE+ L  ++  AYG+D   +L   L  ++ +L       +R   ++P   
Sbjct: 251 EVRELAAKGYKEITLLGQNVNAYGKDFD-DLEYGLGDLMDDLRKINIPRIRFTTSHPRDF 309

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+  + +   +   +H+PVQSGS  +L  M R+YT   +  +V  +   +P + +
Sbjct: 310 DDRLIEV--LAKKGNLVEHIHLPVQSGSSEILKIMGRKYTREQYLELVRKIKAAIPDVAL 367

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
           +TDII GFP ET+E F +T++L KE  F   +   + PR GTPAARMK  +P  V K+R 
Sbjct: 368 STDIIVGFPNETEEQFEETLSLYKEVGFETAYTFIYSPREGTPAARMKDNIPMEVKKERL 427

Query: 408 RELTSVFEAFT 418
           + L  +  A++
Sbjct: 428 QRLNELVNAYS 438


>gi|228993053|ref|ZP_04152976.1| hypothetical protein bpmyx0001_37900 [Bacillus pseudomycoides DSM
           12442]
 gi|228999103|ref|ZP_04158685.1| hypothetical protein bmyco0003_36600 [Bacillus mycoides Rock3-17]
 gi|229006651|ref|ZP_04164285.1| hypothetical protein bmyco0002_35530 [Bacillus mycoides Rock1-4]
 gi|228754512|gb|EEM03923.1| hypothetical protein bmyco0002_35530 [Bacillus mycoides Rock1-4]
 gi|228760720|gb|EEM09684.1| hypothetical protein bmyco0003_36600 [Bacillus mycoides Rock3-17]
 gi|228766701|gb|EEM15341.1| hypothetical protein bpmyx0001_37900 [Bacillus pseudomycoides DSM
           12442]
          Length = 450

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 193/363 (53%), Gaps = 18/363 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIHQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG D+   NL  LL  + AE+  +G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKNYNLAGLLRDMEAEV--NGLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM  ++P  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMDDQIPEEVKNDRV 356

Query: 408 REL 410
             L
Sbjct: 357 HRL 359


>gi|406888093|gb|EKD34682.1| hypothetical protein ACD_75C02237G0006 [uncultured bacterium]
          Length = 461

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 126/391 (32%), Positives = 200/391 (51%), Gaps = 45/391 (11%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA- 119
            ++KTFGC  N+ DSE MA  LS +GY       EAD+ ++NTC++++ ++  + +L+  
Sbjct: 6   FFIKTFGCQMNERDSEIMAQSLSGYGYIEGMEMNEADLVILNTCSIRAKAEQKVLSLLGY 65

Query: 120 ----KCKSAKKPLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLK-GHEV 171
               K K     + VAGCV Q  G+R L  +  V  +VG Q I  +  +++   K G  V
Sbjct: 66  LRKTKLKRPAMKICVAGCVAQQEGNRLLDRMPHVDLVVGTQNIYNIGPLLQRAEKDGSRV 125

Query: 172 RLLHR------KKLPALDL-------------PKVRRNKFVEILPINVGCLGACTYCKTK 212
               R      K LPA                  V+ +KFV I+    GC   CTYC   
Sbjct: 126 VTELRDDYAIPKFLPAFSPMTTDQAGSDRITPSSVQFSKFVTIMQ---GCNNYCTYCVVP 182

Query: 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNL---PILLNAIVAE 269
           + RG   S  V+ ++  V  ++  GVKE+ L  ++  +YG+   V     P   + ++ E
Sbjct: 183 YTRGREISRNVDDIIEEVNILVKAGVKEITLLGQNVNSYGKANAVTADRRPYNFSDLLRE 242

Query: 270 LPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 328
           +   +G   LR   +NP  + + L +    +R+ C     H+PVQSGS+ +L +MNR+YT
Sbjct: 243 VSSVEGLARLRFTTSNPKDLTDALMKSFRDVRNLCPQ--FHLPVQSGSNRILKSMNRKYT 300

Query: 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
            + +   V+ L E +PG+ + TDII GFPGE+DEDF  T+NL+++ +F      ++  RP
Sbjct: 301 AAQYLEKVEKLREYMPGIALTTDIIVGFPGESDEDFQDTMNLLEDIRFHGSFSFKYSDRP 360

Query: 389 GTPAA--------RMKKVPSAVVKKRSRELT 411
           GT A+        R+K    AV ++R  E++
Sbjct: 361 GTQASKLAEKVDERVKMERLAVFQQRQDEIS 391


>gi|425469267|ref|ZP_18848217.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcystis aeruginosa PCC 9701]
 gi|389882035|emb|CCI37463.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcystis aeruginosa PCC 9701]
          Length = 446

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 126/396 (31%), Positives = 199/396 (50%), Gaps = 29/396 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  ++++ EAD+ L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
              K+      LVVAGCV Q  G + L+ +  V  I+G Q  +R+ +++++   G +V  
Sbjct: 69  AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ K RR+  +    +NV  GC   CTYC     RG   S T  ++   + 
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
            +   G KE+ L  ++  AYGRD+      G +L    + +       G   LR   ++P
Sbjct: 187 QLGQQGYKEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
            +  E L +  + L  P V    H+P QSG + +L AM R YT   +R ++  + +L+P 
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRDLMPD 304

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
             I+ D I GFPGET+  F  T+ L+ E  F Q++ + + PRPGTPAA      S  VK 
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKS 364

Query: 405 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEI 435
              +R   L  T   E    YL   GR+E I + E+
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEEV 397


>gi|403384177|ref|ZP_10926234.1| hypothetical protein KJC30_05724 [Kurthia sp. JC30]
          Length = 447

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 122/361 (33%), Positives = 193/361 (53%), Gaps = 18/361 (4%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC--K 122
           T GC  N  ++E +       GY  TD   ++D+++INTCTV +        +I +   K
Sbjct: 8   TLGCKVNHYETEAIWQLFKEAGYERTDFDHQSDVYVINTCTVTNSGDKKSRQVIRRAVRK 67

Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVE----ETLKGHEVRLLHR 176
           +    + V GC  Q S  ++  + GV IV G Q   +++ ++E    E    + VR + +
Sbjct: 68  NPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRQKLLGLIEDYKVERQPINAVRNIMK 127

Query: 177 KKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
            ++   LD+P    ++    L I  GC   CT+C    ARG + S   E +V + + ++ 
Sbjct: 128 NRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEQVVKQAQQLVD 186

Query: 236 DGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
            G KE+ L+   TG YG+D+   NL +LL A+  E    G   LRI       I +   E
Sbjct: 187 AGYKEIVLTGIHTGGYGQDLKDYNLAMLLRAL--ETKVKGLKRLRISSIEASQITD---E 241

Query: 295 IAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           + +VLR+   + + LH+P+QSGSD VL  M R+YT+  F   +  L E++P + I +D+I
Sbjct: 242 VLDVLRNSKIIVNHLHIPIQSGSDTVLKRMRRKYTMEFFGQRLTQLKEVLPDLAITSDVI 301

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 412
            GFPGET+E+F +T N I++Y+F ++H+  F  R GTPAARM+ +V   V  +R   L S
Sbjct: 302 VGFPGETEEEFMETYNFIRDYEFAELHVFPFSKRTGTPAARMEDQVDEDVKNERVHRLLS 361

Query: 413 V 413
           +
Sbjct: 362 L 362


>gi|229062008|ref|ZP_04199334.1| hypothetical protein bcere0026_40810 [Bacillus cereus AH603]
 gi|228717317|gb|EEL68990.1| hypothetical protein bcere0026_40810 [Bacillus cereus AH603]
          Length = 450

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 130/394 (32%), Positives = 201/394 (51%), Gaps = 20/394 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  +++D+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADG 439
             L  +            EG V  I   E   DG
Sbjct: 357 HRLIELSNQLAKEYASKFEGEVLEIIPEETFKDG 390


>gi|303232181|ref|ZP_07318884.1| MiaB-like protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302513287|gb|EFL55326.1| MiaB-like protein [Veillonella atypica ACS-049-V-Sch6]
          Length = 431

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 184/367 (50%), Gaps = 13/367 (3%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T+   T GC  NQ D++ M G      Y   D   +ADI++INTC+V +  +     LI
Sbjct: 2   KTVAFTTLGCRVNQYDTDAMKGLFLQHDYEAVDFDSKADIYVINTCSVTNMGEKKSRQLI 61

Query: 119 AKCKSAKKP--LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEE----TLKGHE 170
            K K   +   ++V GC  Q   D +  ++GV++V G     ++VE+VE+      + + 
Sbjct: 62  RKAKRQNQDAYVIVTGCYAQLDPDAIAAIDGVNLVIGTNNRSKIVELVEQLETTERQINA 121

Query: 171 VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           VR ++       + L     +K    + I  GC   C +C   + RG L S  V+ +V  
Sbjct: 122 VRDIMKESNFEEMPLFGNESDKSRAFMKIQEGCNNYCAFCIIPYTRGKLKSRKVDDIVNE 181

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
            + ++  G  E+ L+    G YG ++    P L + + A L       +R G      + 
Sbjct: 182 AKRLVEHGFHEIVLTGIHLGNYGVELP-GRPTLADVVKALLEIPNLHRIRFGSIESVEVS 240

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           + L E+    +  C +  LH+P+Q+GSD VL+ M R YTL +++ ++  L   +P + I 
Sbjct: 241 DELIELMATDKRVCPH--LHLPLQAGSDHVLTLMKRHYTLQEYKDLIKNLRNRIPDLSIT 298

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 408
           TDII GFP ETDEDF++T+N +KE  F  +H   +  R GTPAA M  +VP AV K R  
Sbjct: 299 TDIIAGFPQETDEDFDETMNTVKEIGFTHIHAFPYSIREGTPAATMPNQVPEAVKKARVA 358

Query: 409 ELTSVFE 415
            L  + E
Sbjct: 359 LLNDLSE 365


>gi|224476428|ref|YP_002634034.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222421035|emb|CAL27849.1| putative radical SAM superfamily protein [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 513

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 197/383 (51%), Gaps = 18/383 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T ++KTFGC  N  D+E MAG   A GY L ++  +AD+ L+NTC ++  +++ + + I 
Sbjct: 68  TFFIKTFGCQMNAHDTEVMAGIFEALGYTLAEDILKADVILLNTCAIRENAENKVFSEIG 127

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  K+      + V GC+ Q     ++ LK  + V ++ G   I ++ E++EE    K
Sbjct: 128 NLKHLKRDRPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYMSK 187

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              + +  ++     +LPKVR + F   + I  GC   CTYC     RG   S   + ++
Sbjct: 188 AMVIDVWSKEGDVIENLPKVRDDYFKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDII 247

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +   G +E+ L  ++  +YG+D+  ++   L  +  ++       +R   ++P  
Sbjct: 248 DEVRDLARQGYQEITLLGQNVNSYGKDLK-DIEYDLGDLFEDISKIDIPRVRFTTSHPWD 306

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             +H+ ++  + +   +   +H+PVQSG+DAVL  M R+YT   +  +V+ +   +P + 
Sbjct: 307 FTDHMIDV--IAKGGNIVPHIHLPVQSGNDAVLKIMGRKYTRESYLDLVNRIKTAIPDVA 364

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T++L  E +F   +   +  R GTPAARMK  V   V K R
Sbjct: 365 LTTDIIVGYPNETEEQFQETLSLYDEVEFEHAYTYLYSQRDGTPAARMKDNVEKEVKKDR 424

Query: 407 SRELTSVFEAFTPYL--GMEGRV 427
            + L      ++     G EG+V
Sbjct: 425 LQRLNQKVGYYSERALKGYEGQV 447


>gi|303229106|ref|ZP_07315908.1| MiaB-like protein [Veillonella atypica ACS-134-V-Col7a]
 gi|302516230|gb|EFL58170.1| MiaB-like protein [Veillonella atypica ACS-134-V-Col7a]
          Length = 435

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 184/367 (50%), Gaps = 13/367 (3%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T+   T GC  NQ D++ M G      Y   D   +ADI++INTC+V +  +     LI
Sbjct: 6   KTVAFTTLGCRVNQYDTDAMKGLFLQHDYEAVDFDSKADIYVINTCSVTNMGEKKSRQLI 65

Query: 119 AKCKSAKKP--LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEE----TLKGHE 170
            K K   +   ++V GC  Q   D +  ++GV++V G     ++VE+VE+      + + 
Sbjct: 66  RKAKRQNQDAYVIVTGCYAQLDPDAIAAIDGVNLVIGTNNRSKIVELVEQLETTERQINA 125

Query: 171 VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           VR ++       + L     +K    + I  GC   C +C   + RG L S  V+ +V  
Sbjct: 126 VRDIMKESNFEEMPLFGNESDKSRAFMKIQEGCNNYCAFCIIPYTRGKLKSRKVDDIVNE 185

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
            + ++  G  E+ L+    G YG ++    P L + + A L       +R G      + 
Sbjct: 186 AKRLVEHGFHEIVLTGIHLGNYGVELP-GRPTLADVVKALLEIPNLHRIRFGSIESVEVS 244

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           + L E+    +  C +  LH+P+Q+GSD VL+ M R YTL +++ ++  L   +P + I 
Sbjct: 245 DELIELMATDKRVCPH--LHLPLQAGSDHVLTLMKRHYTLQEYKDLIKNLRNRIPDLSIT 302

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 408
           TDII GFP ETDEDF++T+N +KE  F  +H   +  R GTPAA M  +VP AV K R  
Sbjct: 303 TDIIAGFPQETDEDFDETMNTVKEIGFTHIHAFPYSIREGTPAATMPNQVPEAVKKARVA 362

Query: 409 ELTSVFE 415
            L  + E
Sbjct: 363 LLNDLSE 369


>gi|163942066|ref|YP_001646950.1| RNA modification protein [Bacillus weihenstephanensis KBAB4]
 gi|229013530|ref|ZP_04170664.1| hypothetical protein bmyco0001_39400 [Bacillus mycoides DSM 2048]
 gi|229169058|ref|ZP_04296774.1| hypothetical protein bcere0007_40100 [Bacillus cereus AH621]
 gi|423368361|ref|ZP_17345793.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD142]
 gi|423489494|ref|ZP_17466176.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BtB2-4]
 gi|423495217|ref|ZP_17471861.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           CER057]
 gi|423497989|ref|ZP_17474606.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           CER074]
 gi|423519010|ref|ZP_17495491.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           HuA2-4]
 gi|423591694|ref|ZP_17567725.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD048]
 gi|423598373|ref|ZP_17574373.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD078]
 gi|423660845|ref|ZP_17636014.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VDM022]
 gi|163864263|gb|ABY45322.1| RNA modification enzyme, MiaB family [Bacillus weihenstephanensis
           KBAB4]
 gi|228614467|gb|EEK71576.1| hypothetical protein bcere0007_40100 [Bacillus cereus AH621]
 gi|228747767|gb|EEL97636.1| hypothetical protein bmyco0001_39400 [Bacillus mycoides DSM 2048]
 gi|401080960|gb|EJP89241.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD142]
 gi|401151310|gb|EJQ58762.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           CER057]
 gi|401160065|gb|EJQ67444.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           HuA2-4]
 gi|401161276|gb|EJQ68643.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           CER074]
 gi|401231827|gb|EJR38329.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD048]
 gi|401236643|gb|EJR43100.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD078]
 gi|401300886|gb|EJS06475.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VDM022]
 gi|402431730|gb|EJV63794.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BtB2-4]
          Length = 450

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 130/394 (32%), Positives = 201/394 (51%), Gaps = 20/394 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  +++D+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADG 439
             L  +            EG V  I   E   DG
Sbjct: 357 HRLIELSNQLAKEYASRFEGEVLEIIPEETFKDG 390


>gi|313673797|ref|YP_004051908.1| tRNA-i(6)a37 thiotransferase enzyme miab [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940553|gb|ADR19745.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 438

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 181/355 (50%), Gaps = 17/355 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y+KTFGC  N+ DS+ +       GY  TD+ EEAD  +INTC+V+   +  + + I +
Sbjct: 5   VYIKTFGCQMNEYDSQRILSIFEESGYDKTDDPEEADFAVINTCSVREKPKEKVKSEIGR 64

Query: 121 CKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
            K  K       + +AGCV Q  G   LKE + V +V G   I ++ E +    KG  + 
Sbjct: 65  LKRYKNSNPDFKIAIAGCVAQEDGEAILKENKSVDLVIGTDGIPKLYEAISRVEKGERLA 124

Query: 173 LLHRKKLPALDLPKVRRNKFVE-ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
           +          +P   RN  V   + I  GC   C+YC   + RG   S   + ++  V+
Sbjct: 125 ITEFYH-DDFTVPIFNRNSSVSAFVTIMKGCDNFCSYCIVPYVRGREKSRHYKEILDEVK 183

Query: 232 TVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
            ++ +GV+EV    ++  +YG+  D  +N    L  + A++  DG   +R   ++P    
Sbjct: 184 FLVDNGVREVTFLGQNVNSYGKTLDEKINFTQFL-YMAAQI--DGLNRIRFVTSHPKDFN 240

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
             L ++    R  C Y  LH+P+Q+GS+ +L  MNR YT  ++   +    E + G+ ++
Sbjct: 241 NDLVDLIASERKICEY--LHLPLQAGSNDILKKMNRGYTFEEYEEKIFNAKEKIKGLALS 298

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
           +D I GFPGETDEDF QT+  +K  ++  +   ++ PRPGT A+ M+   S V K
Sbjct: 299 SDFIVGFPGETDEDFEQTLKAVKNIEYETIFAFKYSPRPGTKASSMQDNISDVEK 353


>gi|228992460|ref|ZP_04152388.1| hypothetical protein bpmyx0001_32010 [Bacillus pseudomycoides DSM
           12442]
 gi|229000596|ref|ZP_04160136.1| hypothetical protein bmyco0003_51290 [Bacillus mycoides Rock3-17]
 gi|229006018|ref|ZP_04163707.1| hypothetical protein bmyco0002_29390 [Bacillus mycoides Rock1-4]
 gi|228755217|gb|EEM04573.1| hypothetical protein bmyco0002_29390 [Bacillus mycoides Rock1-4]
 gi|228759151|gb|EEM08157.1| hypothetical protein bmyco0003_51290 [Bacillus mycoides Rock3-17]
 gi|228767281|gb|EEM15916.1| hypothetical protein bpmyx0001_32010 [Bacillus pseudomycoides DSM
           12442]
          Length = 509

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 120/393 (30%), Positives = 205/393 (52%), Gaps = 21/393 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +  GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 168
            K  K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +  K 
Sbjct: 128 LKPLKQRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKA 187

Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIN 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   +L   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DLEYGLGDLMDELRKIDIARVRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDSAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSVFEAFTPYLGME-GRVERIWITEIAADG 439
           + L ++   ++    ME  +  +  I E+  DG
Sbjct: 425 QRLNALVNEYS----MEKNKRYKGQIVEVLVDG 453


>gi|423469985|ref|ZP_17446729.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG6O-2]
 gi|402437237|gb|EJV69261.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG6O-2]
          Length = 509

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 204/397 (51%), Gaps = 29/397 (7%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +  GY  T ++EEAD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL ++  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+M+  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424

Query: 408 RELTSVFEAFT-----PYLGMEGRVERIWITEIAADG 439
           + L ++   +       Y+G         I E+  DG
Sbjct: 425 QRLNTLVNEYAVNKNKRYIGQ--------IVEVLVDG 453


>gi|423558106|ref|ZP_17534408.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           MC67]
 gi|401191374|gb|EJQ98396.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           MC67]
          Length = 450

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 129/394 (32%), Positives = 202/394 (51%), Gaps = 20/394 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  +++D+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + A++   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAKVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ ++P  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQIPEDVKNDRV 356

Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADG 439
             L  +          G EG V  I   E   DG
Sbjct: 357 HRLIELSNQLAKEYASGFEGEVLEIIPEETFKDG 390


>gi|418472250|ref|ZP_13042006.1| hypothetical protein SMCF_4988 [Streptomyces coelicoflavus ZG0656]
 gi|371547146|gb|EHN75550.1| hypothetical protein SMCF_4988 [Streptomyces coelicoflavus ZG0656]
          Length = 505

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 124/385 (32%), Positives = 194/385 (50%), Gaps = 26/385 (6%)

Query: 52  SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSP 109
           S  + GT T  ++T+GC  N  DSE ++G L   GY  A      +AD+ + NTC V+  
Sbjct: 7   SQSVGGTRTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVREN 66

Query: 110 SQSAMDTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEV 161
           + + +   +     K A +P   + V GC+ Q  RD  +K    V +V G   I ++  +
Sbjct: 67  ADNKLYGNLGHLAPKKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVL 126

Query: 162 VEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
           +E      E ++   + L A    LP  R + +   + I+VGC   CT+C     RG   
Sbjct: 127 LERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186

Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTM 277
                 ++  V  ++A+GV E+ L  ++  AYG DIG       LL A       +   +
Sbjct: 187 DRRPGDILAEVEALVAEGVSEITLLGQNVNAYGSDIGDREAFSKLLRAC-----GNIEGL 241

Query: 278 LRIGMTNP---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT 334
            R+  T+P    F  + +  +AE    P     LH+P+QSGSD VL AM R Y    +  
Sbjct: 242 ERVRFTSPHPRDFTDDVITAMAET---PNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLG 298

Query: 335 VVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394
           +++ +   +P   I TDII GFPGET+EDF QT+++++E +F Q    Q+  RPGTPAA 
Sbjct: 299 IIEKVRAAIPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAE 358

Query: 395 MK-KVPSAVVKKRSRELTSVFEAFT 418
           M+ ++P AVV++R   L ++ E  +
Sbjct: 359 MENQIPKAVVQERYERLVALQEEIS 383


>gi|296330914|ref|ZP_06873389.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305674432|ref|YP_003866104.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|350266015|ref|YP_004877322.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis subsp.
           spizizenii TU-B-10]
 gi|296151919|gb|EFG92793.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305412676|gb|ADM37795.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|349598902|gb|AEP86690.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis subsp.
           spizizenii TU-B-10]
          Length = 509

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 116/366 (31%), Positives = 192/366 (52%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   A GY  T++ ++A++ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K+ KK      L V GC+ Q     +R LK+   V ++ G   I R+ E++ E     E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             + +  ++     +LPKVR  K    + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + ++G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+  + +   +   +H+PVQSGS  VL  M R+Y    +  +V  +   +P   +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKAAMPNASL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E +F   +   + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNAL 430


>gi|452990394|emb|CCQ98409.1| tRNA N(6)-threonylcarbamoyladenosine (t(6)A) methylthiotransferase
           [Clostridium ultunense Esp]
          Length = 443

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 193/371 (52%), Gaps = 26/371 (7%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY   D  EEAD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNFYETEAIWQLFKNKGYTQVDFEEEADVYVINTCTVTNTGDKKSRQMIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 170
           +   K+    + V GC  Q S   + E+ GV IV G Q  DR+++ VEE           
Sbjct: 63  RAIRKNPNAVVAVTGCYAQTSPAKVLEIPGVDIVIGTQGRDRLLDYVEEYKNSRMPINAV 122

Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
             ++ +K+   L +P     K    L I  GC   CT+C    A+G   S   ES++ + 
Sbjct: 123 ANIMKQKEFEELSVPTFS-EKTRAFLKIQEGCNNFCTFCIIPWAKGLSRSRQPESVLQQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           RT+ A+G +E+ L+   TG YG D+   +LP LL  +  E+  +G   +RI       I 
Sbjct: 182 RTLAANGYREIVLTGIHTGGYGEDLEDYSLPRLLMDL-KEI--EGLHRIRISSIEASQIG 238

Query: 290 EHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           E   E+ EV R+ P +   LH+P+Q+G D +L +M+R+YT + ++  ++ + E +P + I
Sbjct: 239 E---EMIEVFRNNPKMCRHLHIPLQAGDDTILKSMHRKYTTAQYKEKIEKIKEALPHVAI 295

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR- 406
            TD+I GFPGET+E F  T + I+E  F ++H+  +  R GTPAAR   +VP  V K+R 
Sbjct: 296 TTDVIVGFPGETEEMFQNTYDYIREIGFAELHVFPYSKRTGTPAARFPNQVPEEVKKERV 355

Query: 407 ------SRELT 411
                 +RELT
Sbjct: 356 DRLLELNRELT 366


>gi|423512424|ref|ZP_17488955.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           HuA2-1]
 gi|402449395|gb|EJV81232.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           HuA2-1]
          Length = 450

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 130/394 (32%), Positives = 201/394 (51%), Gaps = 20/394 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  +++D+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADG 439
             L  +            EG V  I   E   DG
Sbjct: 357 HRLIELSNQLAKEYASRFEGEVLEIIPEETFKDG 390


>gi|302871702|ref|YP_003840338.1| tRNA-i(6)A37 thiotransferase protein MiaB [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574561|gb|ADL42352.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 471

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 124/396 (31%), Positives = 193/396 (48%), Gaps = 44/396 (11%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
           T+GC  N  DSE +AG L+A GY  T+N +EAD+ + NTC+V+  ++S +   I   K  
Sbjct: 42  TYGCQMNVHDSEKLAGMLNAMGYVETENIQEADLIIFNTCSVREHAESRVYGNIGPLKRL 101

Query: 123 SAKKP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVR 172
             KKP   + V GC+PQ     ++L  +      I G + + +  +++    T K   + 
Sbjct: 102 KDKKPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKKTVID 161

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           +   + +    +P  RR      + I  GC   CTYC   + RG   S   E ++  +  
Sbjct: 162 ISEDEDVVVEGIPTARRQGVSAFVNIIYGCNNFCTYCIVPYVRGRERSRRPEEIIYEIEQ 221

Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAI-----------VAELPPDGSTMLR 279
           ++ +GVKEV L  ++  +YG+D+  G+  P LL  +           V   P D S  L 
Sbjct: 222 LVQNGVKEVTLLGQNVNSYGKDLANGITFPKLLEKVNEIKGIERIRFVTSHPKDLSDELI 281

Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
           + M +   + EH+                H+PVQSGS  +L AMNR YT  D+  +V+ L
Sbjct: 282 VAMRDLDKVCEHI----------------HLPVQSGSTRILKAMNRHYTKEDYLRLVEKL 325

Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKV 398
              +P + I TDII GFPGETDEDF  T+++ ++ +F   +   +  R GTPA +M  +V
Sbjct: 326 KTNIPDIAITTDIIVGFPGETDEDFEDTLDVCQKVEFDSAYTFIYSKRRGTPAEKMPNQV 385

Query: 399 PSAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWI 432
           P  +  +R + L  + E  A      M G+   I I
Sbjct: 386 PEDIKHQRFQRLVKLVEEIALKKNKQMLGKTYEILI 421


>gi|228922487|ref|ZP_04085789.1| hypothetical protein bthur0011_34740 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228940850|ref|ZP_04103410.1| hypothetical protein bthur0008_34910 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973771|ref|ZP_04134348.1| hypothetical protein bthur0003_35260 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980326|ref|ZP_04140637.1| hypothetical protein bthur0002_34950 [Bacillus thuringiensis Bt407]
 gi|384187776|ref|YP_005573672.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
           chinensis CT-43]
 gi|410676093|ref|YP_006928464.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
           thuringiensis Bt407]
 gi|423581983|ref|ZP_17558094.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD014]
 gi|423635455|ref|ZP_17611108.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD156]
 gi|452200154|ref|YP_007480235.1| tRNA-i(6)A37 methylthiotransferase [Bacillus thuringiensis serovar
           thuringiensis str. IS5056]
 gi|228779431|gb|EEM27687.1| hypothetical protein bthur0002_34950 [Bacillus thuringiensis Bt407]
 gi|228785923|gb|EEM33925.1| hypothetical protein bthur0003_35260 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818864|gb|EEM64929.1| hypothetical protein bthur0008_34910 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228837201|gb|EEM82540.1| hypothetical protein bthur0011_34740 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|326941485|gb|AEA17381.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
           chinensis CT-43]
 gi|401212862|gb|EJR19603.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD014]
 gi|401278206|gb|EJR84142.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD156]
 gi|409175222|gb|AFV19527.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
           thuringiensis Bt407]
 gi|452105547|gb|AGG02487.1| tRNA-i(6)A37 methylthiotransferase [Bacillus thuringiensis serovar
           thuringiensis str. IS5056]
          Length = 509

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 195/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +  GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|390440335|ref|ZP_10228674.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcystis sp. T1-4]
 gi|389836262|emb|CCI32800.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcystis sp. T1-4]
          Length = 446

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 126/396 (31%), Positives = 199/396 (50%), Gaps = 29/396 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  ++++ EAD+ L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
              K+      LVVAGCV Q  G + L+ +  V  I+G Q  +R+ +++++   G +V  
Sbjct: 69  AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ K RR+  +    +NV  GC   CTYC     RG   S T  ++   + 
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEME 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
            +   G KE+ L  ++  AYGRD+      G +L    + +       G   LR   ++P
Sbjct: 187 QLGQQGYKEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
            +  E L +  + L  P V    H+P QSG + VL AM R YT   +R ++  + +L+P 
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTQEKYRQIIANIRDLMPD 304

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
             I+ D I GFPGET+  F  T+ L+ E  F Q++ + + PRPGTPAA      S  VK 
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDDQLSEQVKS 364

Query: 405 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEI 435
              +R   L  T   E    YL   GR+E I + ++
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDV 397


>gi|229086321|ref|ZP_04218499.1| hypothetical protein bcere0022_29080 [Bacillus cereus Rock3-44]
 gi|228697016|gb|EEL49823.1| hypothetical protein bcere0022_29080 [Bacillus cereus Rock3-44]
          Length = 509

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 197/371 (53%), Gaps = 16/371 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++++AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTKDADVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 168
            K  K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +  K 
Sbjct: 128 LKPLKQRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKA 187

Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIN 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   +L   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DLEYGLGDLMDELRKIDIARVRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDSAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSVFEAFT 418
           + L ++   ++
Sbjct: 425 QRLNALVNEYS 435


>gi|257060632|ref|YP_003138520.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
           PCC 8802]
 gi|256590798|gb|ACV01685.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 8802]
          Length = 446

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 112/359 (31%), Positives = 188/359 (52%), Gaps = 20/359 (5%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  +++  +AD+ L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILENMGFIWSEDPNQADLILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K       L+VAGCV Q  G + L+ +  + +V G Q  +R+ +++++   G++V  
Sbjct: 69  AKRKHENPDLTLIVAGCVAQQEGEQILRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ K RR+  +    +NV  GC   C+YC   + RG   S T E+++  + 
Sbjct: 129 TEPIHIIE-DITKPRRDSTITAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAILAEME 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
            +   G KEV L  ++  AYGRD+      G +   L + +       G   +R   ++P
Sbjct: 187 LLGKQGYKEVTLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYTVHDVVGIERIRFATSHP 246

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
            +  E L    + L   C +   H+P QSG + +L AM R YT   +R ++D + + +P 
Sbjct: 247 RYFTERLIAACQELSKVCEH--FHIPFQSGDNDILKAMKRGYTHEKYRQIIDKIRDYMPD 304

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
             I+ D I GFPGET+E F  T+NL+++  F Q++ + + PRPGTPAA      S  VK
Sbjct: 305 ASISADAIVGFPGETEEQFENTLNLVEDIGFDQLNTAAYSPRPGTPAALWDNQLSEEVK 363


>gi|433654786|ref|YP_007298494.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacterium
           thermosaccharolyticum M0795]
 gi|433292975|gb|AGB18797.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacterium
           thermosaccharolyticum M0795]
          Length = 452

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 189/362 (52%), Gaps = 17/362 (4%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV--KSPSQSAMDTLIAKCK 122
           T GC  NQ ++E M       GY + D  E AD+++INTCTV  +   +S  +   AK  
Sbjct: 27  TLGCKVNQYETEAMVEIFKNSGYDVVDFDEYADVYIINTCTVTGRGDMKSRQEIRKAKKI 86

Query: 123 SAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLH 175
           +    + V GC  Q  S ++  L  V+IV G +    VV++VE+     E       +  
Sbjct: 87  NPDSIIAVVGCYSQVASNEVLNLPEVNIVLGTKNKGEVVKLVEKVSGDKEKINAVENIFD 146

Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
            KK   L +   +       L I  GC   CTYC   +ARG + S   ++++  V+ +  
Sbjct: 147 NKKFEELKIS-AQEGHTRAYLKIQDGCNQFCTYCIIPYARGPVRSRRPDNILDEVKRLRD 205

Query: 236 DGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
           +G KEV L+     +YG+D+  +NL  ++  I      DG   +R+    P F+ E    
Sbjct: 206 NGYKEVILTGIHVASYGKDLENINLLDIIKMI---HEVDGIERIRMSSIEPTFLTEDF-- 260

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
           I EV   P      HV +QSGSD+ L  M R+YT S+++ ++D + E +  + I TDI+ 
Sbjct: 261 IKEVASLPKFCRHYHVSLQSGSDSTLKRMGRKYTTSEYKEIIDRIREHIKDVAITTDIMV 320

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV 413
           GFPGETDE+FN+T N +K  +F ++H+ ++  RPGT AA    +V ++V ++RS++L  +
Sbjct: 321 GFPGETDEEFNETFNFVKAIEFSKMHVFKYSRRPGTKAANYPDQVKNSVKEERSQKLIKL 380

Query: 414 FE 415
            E
Sbjct: 381 SE 382


>gi|314933472|ref|ZP_07840837.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus caprae
           C87]
 gi|313653622|gb|EFS17379.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus caprae
           C87]
          Length = 514

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 114/365 (31%), Positives = 190/365 (52%), Gaps = 16/365 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L A GY+ T +  +AD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILKALGYSATTDINQADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V ++ G   I  + E++EE    K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G +E+ L  ++  +YG+DI  +L   L  ++ ++       +R   ++P  
Sbjct: 249 NEVRELAREGYQEITLLGQNVNSYGKDIE-DLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  +     +   +H+PVQSG++AVL  M R+YT   +  +V+ +   +P + 
Sbjct: 308 FTDRMIEV--IANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIKTAIPNIA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T++L  E +F   +   +  R GTPAA+MK  VP+ V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKER 425

Query: 407 SRELT 411
            + L 
Sbjct: 426 LQRLN 430


>gi|336113897|ref|YP_004568664.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus coagulans 2-6]
 gi|335367327|gb|AEH53278.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus coagulans 2-6]
          Length = 515

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 192/371 (51%), Gaps = 16/371 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG     GY  T+  E+AD+ L+NTC ++  +++ +   I  
Sbjct: 71  FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTETVEDADVVLLNTCAIRENAENKVFGEIGH 130

Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 168
            K  K  KP   + V GC+ Q     ++ L++   V +V G   I R+  +++E    K 
Sbjct: 131 LKPLKTEKPDMLIGVCGCMSQEESVVNKILQKHPHVDMVFGTHNIHRLPYILKEAYMSKA 190

Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++      LPKVR+      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 191 MVVEVWSKEGDVIESLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A G KE+ L  ++  AYG+D   +L   L  ++ +L       +R   ++P   
Sbjct: 251 EVRELAAKGYKEITLLGQNVNAYGKDFD-DLEYGLGDLMDDLRKINIPRIRFTTSHPRDF 309

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+  + +   +   +H+PVQSGS  +L  M R+YT   +  +V  +   +P + +
Sbjct: 310 DDRLIEV--LAKKGNLVEHIHLPVQSGSSEILKIMGRKYTREQYLELVRKIKAAIPDVAL 367

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
           +TDII GFP ET+E F +T++L KE  F   +   + PR GTPAARMK  +P  V K+R 
Sbjct: 368 STDIIVGFPNETEEQFEETLSLYKEVGFETAYTFIYSPREGTPAARMKDNIPMEVKKERL 427

Query: 408 RELTSVFEAFT 418
           + L  +  A++
Sbjct: 428 QRLNELVNAYS 438


>gi|223044509|ref|ZP_03614536.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
           SK14]
 gi|222442106|gb|EEE48224.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
           SK14]
          Length = 514

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 114/365 (31%), Positives = 190/365 (52%), Gaps = 16/365 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L A GY+ T +  +AD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILKALGYSATTDINQADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V ++ G   I  + E++EE    K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G +E+ L  ++  +YG+DI  +L   L  ++ ++       +R   ++P  
Sbjct: 249 NEVRELAREGYQEITLLGQNVNSYGKDIE-DLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  +     +   +H+PVQSG++AVL  M R+YT   +  +V+ +   +P + 
Sbjct: 308 FTDRMIEV--IANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIKTAIPNIA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T++L  E +F   +   +  R GTPAA+MK  VP+ V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKER 425

Query: 407 SRELT 411
            + L 
Sbjct: 426 LQRLN 430


>gi|261416782|ref|YP_003250465.1| radical SAM protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|385791613|ref|YP_005822736.1| radical SAM domain-containing protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373238|gb|ACX75983.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327266|gb|ADL26467.1| radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 467

 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 184/354 (51%), Gaps = 28/354 (7%)

Query: 93  SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVVAGCVPQGSRD--LKELEGVS 148
           +E+ + + +N CTVK  +  AM  L+ K  S     P+ + GC P+  R+  L+ +  V 
Sbjct: 70  TEKPEAFYLNVCTVKG-NAGAMK-LLRKAASTFPGVPIYITGCAPKDFREEALRTVPHVQ 127

Query: 149 IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRN-----KFVEILPINVGCL 203
              ++++D    +  ++ +    ++  R      D  K  RN      FV I+ I  GCL
Sbjct: 128 FTSLKELDASAILPTQSAQSPSSQINARTP----DSNKASRNVLRESPFVGIVNIEEGCL 183

Query: 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILL 263
            AC +C T   +G L S+  +++V +V+ ++ DG  E+ L+ +D   YG DIG NL  L 
Sbjct: 184 DACAFCSTHLVKGRLHSFAPQTIVDQVQALVDDGCLEIQLTGQDCACYGFDIGTNLAELT 243

Query: 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM 323
             I+  +  +G+  +R+GM NP  +L + + +        +Y F+H+PVQSGS+ VL AM
Sbjct: 244 QRILTHV--NGNYRIRLGMGNPRHVLSYQEALLNCFTDDRIYKFIHIPVQSGSENVLKAM 301

Query: 324 NREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383
           NR +T  D+ T+     E      ++TD+I G+PGET  DFN T+ L+KE +    +I++
Sbjct: 302 NRRHTARDYATLAHAFTERFRKFTLSTDLIVGYPGETAADFNDTLTLLKETRPTVCNITR 361

Query: 384 FYPRPGTPAARMKKVPSAVVK-----KRSRELTSVFEAFTPYLGMEGRVERIWI 432
           F  RPGT AAR++   +  V      +RS  L   F+     + +E    R WI
Sbjct: 362 FVTRPGTVAARLETASNQAVSDDIKHERSAILAEAFQ----QIALEN--NREWI 409


>gi|373857373|ref|ZP_09600115.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus sp. 1NLA3E]
 gi|372453023|gb|EHP26492.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus sp. 1NLA3E]
          Length = 514

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 118/380 (31%), Positives = 190/380 (50%), Gaps = 21/380 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG   + GY  TD  E+A++ L+NTC ++  +++ +   I  
Sbjct: 71  FYIRTYGCQMNEHDTEVMAGICLSLGYQPTDTVEDANVILLNTCAIRENAENKVFGEIGH 130

Query: 121 CKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE 170
            K  KK      L V GC+ Q    + ++         I G   I R+  +++E     E
Sbjct: 131 LKVLKKERPDLLLGVCGCMSQEESVVNKILSKHPHIDMIFGTHNIHRLPNILQEAYMSKE 190

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC     RG   S   E ++ 
Sbjct: 191 MVVEVWSKEGDVIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIQ 250

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A G +E+ L  ++  AYG+D+   +   L  ++ E+   G   +R   ++P   
Sbjct: 251 EVRQLAAQGYQEITLLGQNVNAYGKDL-TEMNYGLGNLMDEIRLMGVPRIRFSTSHPRDF 309

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL  I  + +   +   +H+PVQSGS  VL  M R+YT   +  +V  +   +P + +
Sbjct: 310 DDHL--IKVLAKKGNLMEHIHLPVQSGSTDVLKIMARKYTREQYLELVQKIKAAIPDVTL 367

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
            TDII G+P ET+E F +T++L++E  F   +   + PR GTPAA+M   VP  V K+R 
Sbjct: 368 TTDIIVGYPNETEEQFEETMSLVREVGFEAAYTFIYSPREGTPAAKMHDNVPLEVKKERL 427

Query: 408 RELTSVF-----EAFTPYLG 422
           + L ++      EA   Y G
Sbjct: 428 QRLNTLVNEQSAEAMKQYKG 447


>gi|416390510|ref|ZP_11685519.1| tRNA-i(6)A37 methylthiotransferase [Crocosphaera watsonii WH 0003]
 gi|357264032|gb|EHJ12968.1| tRNA-i(6)A37 methylthiotransferase [Crocosphaera watsonii WH 0003]
          Length = 452

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 188/360 (52%), Gaps = 22/360 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
           ++ TFGC  N++DSE MAG L   G+  + +   AD+ L NTCT++  ++  + + +   
Sbjct: 9   HITTFGCQMNKADSERMAGILEDMGFKWSQDPNGADLILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K K+    LVVAGCV Q  G + L+ +  + +V G Q  +R+ +++ +   G++V  
Sbjct: 69  AKRKHKNPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLEDLLTQVFDGNQVIA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
                +   D+ K RR+  V   + I  GC   C+YC     RG   S T E++   +  
Sbjct: 129 TEPIHI-VEDITKPRRDSTVTAWVNIIYGCNEKCSYCVVPSVRGVEQSRTPEAIYAEMEL 187

Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
           +   G KEV L  ++  AYGRD+      G +   L + +  V ++P  G   LR   ++
Sbjct: 188 LAKQGYKEVTLLGQNIDAYGRDLPGVTASGRHKHTLTDLLYQVHDIP--GIERLRFATSH 245

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           P +  E L +  + L  P V    H+P QSG + VL AM R YT   +R ++D + E +P
Sbjct: 246 PRYFTERLIKACDEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTHQKYRKIIDKIREYMP 303

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
              I+ D I GFPGET+E F  T+ L+ +  F Q++ + + PRPGTPAA  ++  S  VK
Sbjct: 304 DASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWEQQLSEEVK 363


>gi|423483363|ref|ZP_17460053.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG6X1-2]
 gi|401140914|gb|EJQ48469.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG6X1-2]
          Length = 560

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 204/397 (51%), Gaps = 29/397 (7%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +  GY  T ++EEAD+ L+NTC ++  +++ +   +  
Sbjct: 119 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 178

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 179 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 238

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 239 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 298

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 299 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 357

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL ++  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 358 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 415

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+M+  VP  V K+R 
Sbjct: 416 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 475

Query: 408 RELTSVFEAFT-----PYLGMEGRVERIWITEIAADG 439
           + L ++   +       Y+G         I E+  DG
Sbjct: 476 QRLNTLVNEYAVNKNKRYIGQ--------IVEVLVDG 504


>gi|163941460|ref|YP_001646344.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           weihenstephanensis KBAB4]
 gi|229890426|sp|A9VS16.1|MIAB_BACWK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|163863657|gb|ABY44716.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus
           weihenstephanensis KBAB4]
          Length = 509

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 196/370 (52%), Gaps = 16/370 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +  GY  T ++EEAD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL ++  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+M+  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424

Query: 408 RELTSVFEAF 417
           + L ++   +
Sbjct: 425 QRLNTLVNEY 434


>gi|289768676|ref|ZP_06528054.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces lividans
           TK24]
 gi|289698875|gb|EFD66304.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces lividans
           TK24]
          Length = 505

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 120/375 (32%), Positives = 190/375 (50%), Gaps = 16/375 (4%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQSAM 114
           GT T  ++T+GC  N  DSE ++G L   GY  A      +AD+ + NTC V+  + + +
Sbjct: 12  GTRTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVRENADNKL 71

Query: 115 DTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL 166
              +     K A +P   + V GC+ Q  RD  +K    V +V G   I ++  ++E   
Sbjct: 72  YGNLGHLAPKKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERAR 131

Query: 167 KGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
              E ++   + L A    LP  R + +   + I+VGC   CT+C     RG        
Sbjct: 132 VQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPG 191

Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
            ++  V  ++A+GV E+ L  ++  AYG DIG +       + A    +G   +R    +
Sbjct: 192 DILAEVEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGNINGLERVRFTSPH 250

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           P    + +  IA +   P     LH+P+QSGSD VL AM R Y    +  +++ +   +P
Sbjct: 251 PRDFTDDV--IAAMAETPNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKVRAAIP 308

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
              I TDII GFPGET+EDF QT+++++E +F Q    Q+  RPGTPAA M+ ++P AVV
Sbjct: 309 HAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMENQIPKAVV 368

Query: 404 KKRSRELTSVFEAFT 418
           ++R   L ++ E  +
Sbjct: 369 QERYERLVALQEEIS 383


>gi|304438410|ref|ZP_07398350.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304368493|gb|EFM22178.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 437

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 122/369 (33%), Positives = 183/369 (49%), Gaps = 35/369 (9%)

Query: 66  FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
           +GC  N +D+E M GQL A GY  T+ + +AD+ LINTC V+  ++  +   I + K  K
Sbjct: 10  YGCQMNVADAERMEGQLQAAGYVRTEKTADADVILINTCCVRETAEDKVYGKIGEIKKVK 69

Query: 126 KP-----LVVAGCVPQ--GSRDLKELEGVSIV----GVQQIDRVVE--------VVEETL 166
           +        + GC+ Q  G   ++    +  V     VQ++ R+V         VV+  L
Sbjct: 70  EHHPQLIFGITGCMAQKEGENLMRRAPHIDFVLGTGKVQELGRIVAEIAAERAPVVDVAL 129

Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
             H V           DLP  R       +PI  GC   CTYC   + RG   S T E +
Sbjct: 130 DAHAVEE---------DLPIARGGTLSAWVPIMYGCNNYCTYCIVPYVRGRERSRTPEEV 180

Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNP 285
           V  VR   ADG +EV L  ++  +YG+D G  +   LL  + A    +G   +R   ++P
Sbjct: 181 VAEVRRAAADGYREVTLLGQNVNSYGKDHGQADFADLLRMVDA---VEGIRRVRFMTSHP 237

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             I + L +  +   H C    +H+PVQ GS+ +L AMNR YT+  +R     + E +PG
Sbjct: 238 KDISDKLIDTIKNGTHIC--EHIHLPVQYGSNRILKAMNRVYTVEQYRERARRVREALPG 295

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
             + TD+I GFPGET+EDF +T++ ++E ++   +   +  R GTPAA M  +VP  V  
Sbjct: 296 ASLTTDLIVGFPGETEEDFAETLDFLREMRYDAAYTFLYSKRSGTPAAAMAAQVPDEVKH 355

Query: 405 KRSRELTSV 413
            R   L +V
Sbjct: 356 ARLERLMAV 364


>gi|408500855|ref|YP_006864774.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium
           asteroides PRL2011]
 gi|408465679|gb|AFU71208.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium
           asteroides PRL2011]
          Length = 485

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 122/384 (31%), Positives = 194/384 (50%), Gaps = 26/384 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTD----NSEEADIWLINTCTVKSPSQSAMDTL 117
           Y++T GC  N+ DSE +AG L A GY         + E D+ ++NTC V+  +   M   
Sbjct: 34  YVRTLGCQMNEHDSERIAGVLRAQGYRQATPEQVRAREVDVMVLNTCAVRDNATQRMYGT 93

Query: 118 IAKCKSAK--KP---LVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGH 169
           I +    K  KP   + V GC+ Q  R+  +K    V ++ G + I  +  ++++  K  
Sbjct: 94  IGRWHRFKQHKPDTRIAVGGCMAQKDRERIVKAAPWVDAVFGTRDIGSLPGLLDKARKDG 153

Query: 170 EVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
             ++   ++L  L   LP VR ++    + I+VGC   CT+C     RG     +++ ++
Sbjct: 154 RPQVGVSQELRDLPGRLPAVRASRSQAWVSISVGCNNTCTFCIVPSVRGRERDRSMDDIL 213

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNP 285
             V   +  G ++V L  ++  +YG   G       LL A    +P  G   +R    +P
Sbjct: 214 QEVEDCVRSGARQVTLLGQNVNSYGWSTGDRYAFARLLRA-CGRVP--GLERIRFTSPHP 270

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
               + +  IA +   P V   LH+P+QSGSD +L AM R Y    F  ++D +   +P 
Sbjct: 271 AAFTDDV--IAAMAETPTVMHQLHMPLQSGSDRILRAMRRSYRSQRFLQILDKVRAAMPD 328

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
             I TDII GFPGET+EDF  T+++++  +F    I ++ PRPGTPAARM ++P AVV+ 
Sbjct: 329 ALITTDIIVGFPGETEEDFQATMDVVRRARFSSAFIFEYSPRPGTPAARMPQLPKAVVQD 388

Query: 406 RSRELTSVFEAFT-----PYLGME 424
           R   L ++ E+ T      +LG E
Sbjct: 389 RFERLQALQESITMEHMQAFLGKE 412


>gi|229075984|ref|ZP_04208957.1| hypothetical protein bcere0024_40230 [Bacillus cereus Rock4-18]
 gi|229104941|ref|ZP_04235597.1| hypothetical protein bcere0019_40790 [Bacillus cereus Rock3-28]
 gi|229117807|ref|ZP_04247171.1| hypothetical protein bcere0017_40780 [Bacillus cereus Rock1-3]
 gi|423377832|ref|ZP_17355116.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG1O-2]
 gi|423547613|ref|ZP_17523971.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           HuB5-5]
 gi|423622602|ref|ZP_17598380.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD148]
 gi|228665604|gb|EEL21082.1| hypothetical protein bcere0017_40780 [Bacillus cereus Rock1-3]
 gi|228678435|gb|EEL32656.1| hypothetical protein bcere0019_40790 [Bacillus cereus Rock3-28]
 gi|228707096|gb|EEL59296.1| hypothetical protein bcere0024_40230 [Bacillus cereus Rock4-18]
 gi|401179334|gb|EJQ86507.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           HuB5-5]
 gi|401260722|gb|EJR66890.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD148]
 gi|401636098|gb|EJS53852.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG1O-2]
          Length = 450

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 130/394 (32%), Positives = 201/394 (51%), Gaps = 20/394 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  +++D+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADG 439
             L  +            EG V  I   E   DG
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKDG 390


>gi|210633082|ref|ZP_03297649.1| hypothetical protein COLSTE_01557 [Collinsella stercoris DSM 13279]
 gi|210159236|gb|EEA90207.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Collinsella stercoris DSM
           13279]
          Length = 453

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 121/382 (31%), Positives = 193/382 (50%), Gaps = 23/382 (6%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T +++TFGC  N  DSE ++G L + G     + ++ADI +  TC V+  + + +    
Sbjct: 10  KTYFIRTFGCQMNLHDSERVSGLLDSLGCLQALDPKDADIVIFMTCCVREAADTRLYGQC 69

Query: 119 AKCKS------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG- 168
           + CKS       ++ + V GC+ Q  G   L  L+ V ++ G   I  V +++ +     
Sbjct: 70  SSCKSLPASPSGRRVVAVGGCIAQRDGEGLLTNLDNVDVIFGTHSIAHVGDLLADAFADG 129

Query: 169 -HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              VR+       A ++P  R   +   +PI  GC   C+YC   + RG   S  +E +V
Sbjct: 130 DRHVRVEEIDSGAATEMPWHRETAYHAWVPIMTGCNNFCSYCIVPYVRGREKSRPMEEIV 189

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             V  ++  GV+ V L  ++  +YGRD G + P     ++  +   G   +    ++P  
Sbjct: 190 DEVTGLVRQGVRSVTLLGQNVNSYGRDHG-SAPRFAE-LLRRVGETGVERIYFTSSHPKD 247

Query: 288 IL-EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
           +L E +  IAEV   P V   LH+ VQSGS  +L  MNR+YT   +  +VD + + +P +
Sbjct: 248 LLPETIDAIAEV---PAVMPQLHLAVQSGSSRILKLMNRKYTREQYLDLVDRVRDRIPDI 304

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVKK 405
            + TDII GFPGET+EDF QTV L+ E KF Q     +  R GTPAA +    P +V+++
Sbjct: 305 ALTTDIIVGFPGETEEDFEQTVTLVDEAKFAQAFTFIYSKRAGTPAAEIDDPTPRSVIQQ 364

Query: 406 RSREL-----TSVFEAFTPYLG 422
           R   L     T+ F+    +LG
Sbjct: 365 RFDRLVRHVETTAFDYNQRFLG 386


>gi|407706837|ref|YP_006830422.1| Holliday junction DNA helicase subunit RuvA [Bacillus thuringiensis
           MC28]
 gi|407384522|gb|AFU15023.1| RNA modification enzyme, MiaB family [Bacillus thuringiensis MC28]
          Length = 450

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 130/394 (32%), Positives = 201/394 (51%), Gaps = 20/394 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  +++D+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADG 439
             L  +            EG V  I   E   DG
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKDG 390


>gi|229031402|ref|ZP_04187403.1| hypothetical protein bcere0028_34560 [Bacillus cereus AH1271]
 gi|228729897|gb|EEL80876.1| hypothetical protein bcere0028_34560 [Bacillus cereus AH1271]
          Length = 509

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 194/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   +    L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P    
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVF 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ET+E F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETNEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|427723965|ref|YP_007071242.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptolyngbya sp. PCC
           7376]
 gi|427355685|gb|AFY38408.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptolyngbya sp. PCC
           7376]
          Length = 451

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 186/362 (51%), Gaps = 26/362 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   GY   ++  EAD+ L NTCT++  ++  + + + + 
Sbjct: 8   HITTFGCQMNKADSERMAGILEGMGYLFAEDPNEADLVLYNTCTIRDNAEQKVYSYLGRQ 67

Query: 122 KSAK--KP---LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
              K  KP   L+VAGCV Q  G   L+ +  V  I+G Q  +R+ E++E+   G ++  
Sbjct: 68  AKRKHSKPDLTLIVAGCVAQQEGESLLRRVPEVDLIMGPQHANRLQELLEQVDSGSQIVA 127

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ K RR+  V    +NV  GC   CTYC     RG   S   E++   + 
Sbjct: 128 TEPIHI-VEDITKPRRDSSVTAW-VNVIYGCNEHCTYCVVPGVRGTEQSRYPEAIYAEME 185

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI---------GVNLPILLNAIVAELPPDGSTMLRIGM 282
            +   G KEV L  ++  AYGRD+           NL  LL   V ++P  G   +R   
Sbjct: 186 ELGRQGFKEVTLLGQNIDAYGRDLPGTTPEGRNKYNLTDLL-YFVHDVP--GIERIRFAT 242

Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
           ++P +  E L +    L  P +    H+P QSG + VL AM R YT   +R ++D + + 
Sbjct: 243 SHPRYFTERLIKACHEL--PKICEHFHIPFQSGDNDVLKAMRRGYTHEKYRRIIDNVRKY 300

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
           +P   I+ D I  FPGET+E F  T+ L+++  F Q++ + + PRPGTPAA  +   S  
Sbjct: 301 MPDASISADAIVAFPGETEEQFENTLKLVEDIGFDQLNTAAYSPRPGTPAAVWEDQLSEE 360

Query: 403 VK 404
           VK
Sbjct: 361 VK 362


>gi|229098781|ref|ZP_04229719.1| hypothetical protein bcere0020_40070 [Bacillus cereus Rock3-29]
 gi|423440940|ref|ZP_17417846.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG4X2-1]
 gi|423448892|ref|ZP_17425771.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG5O-1]
 gi|423464005|ref|ZP_17440773.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG6O-1]
 gi|423533368|ref|ZP_17509786.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           HuB2-9]
 gi|423541377|ref|ZP_17517768.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           HuB4-10]
 gi|228684625|gb|EEL38565.1| hypothetical protein bcere0020_40070 [Bacillus cereus Rock3-29]
 gi|401129486|gb|EJQ37169.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG5O-1]
 gi|401172565|gb|EJQ79786.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           HuB4-10]
 gi|402417601|gb|EJV49901.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG4X2-1]
 gi|402420272|gb|EJV52543.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG6O-1]
 gi|402463587|gb|EJV95287.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           HuB2-9]
          Length = 450

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 130/394 (32%), Positives = 201/394 (51%), Gaps = 20/394 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  +++D+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADG 439
             L  +            EG V  I   E   DG
Sbjct: 357 HRLIELSNQLAKEYASRFEGEVLEIIPEEQFKDG 390


>gi|427406487|ref|ZP_18896692.1| MiaB-like tRNA modifying enzyme [Selenomonas sp. F0473]
 gi|425707917|gb|EKU70958.1| MiaB-like tRNA modifying enzyme [Selenomonas sp. F0473]
          Length = 434

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 114/361 (31%), Positives = 188/361 (52%), Gaps = 23/361 (6%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +   T GC  NQ ++E M G   A GY +    E AD++++NTC+V   S      LI +
Sbjct: 4   VAFMTLGCKVNQFETETMEGLFRARGYEVVPFEERADVYVVNTCSVTHLSDRKSRQLIRR 63

Query: 121 CKSA--KKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE------ 170
                 +  + V GC  Q    +++ LEGV +V G ++  ++V+ VEE L+  +      
Sbjct: 64  AARTNPRACIAVCGCYAQVAPEEIRALEGVRVVIGTKERAQIVDYVEEALRAEDHVAGRI 123

Query: 171 ---VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              ++    + +P   +P   R      L I  GC   CT+C   +ARG + S T+ ++ 
Sbjct: 124 TDIMQARTFEDIPLAYMPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSRTLPAVR 179

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
                ++A G +E+ L+    GAYG D+    P L +A    L   G   LR+       
Sbjct: 180 RETERLVAAGFREIVLTGIHLGAYGIDLA-ERPTLADACRTALSLPGLGRLRLSSLES-- 236

Query: 288 ILEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
            +E   ++ E++R  P   + LH+P+Q+GSD VL+AMNR Y  + F  +++ +   VPG+
Sbjct: 237 -VELSADLLELIRTEPRFAAHLHLPLQAGSDGVLAAMNRHYDTAAFARLIEDVRRAVPGV 295

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 405
            ++TD+I GFPGET+  F + ++ I+   F ++H+  + PR GTPAAR   ++P+ V K+
Sbjct: 296 AVSTDVIVGFPGETEAQFAEGMDFIRRMGFARMHVFPYSPRRGTPAARRPDQIPAPVRKE 355

Query: 406 R 406
           R
Sbjct: 356 R 356


>gi|374339750|ref|YP_005096486.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Marinitoga piezophila KA3]
 gi|372101284|gb|AEX85188.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Marinitoga piezophila KA3]
          Length = 450

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA- 119
            Y+KTFGC  N ++SE M G L   G+  T+N +EAD+ ++N+C V+  +++ +   I  
Sbjct: 3   FYIKTFGCQMNVNESEIMTGILEKEGFEWTENPQEADVIILNSCAVREKAENKLYGAIGS 62

Query: 120 --KCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
             K K  K+ L++A  GCV +  ++  ++    V+ V G +    + + ++   +  +  
Sbjct: 63  YGKLKKKKEDLIIAVGGCVAEKEKENIIQRFHEVNFVFGTRNYMNIKKFIDRAKRSKKRF 122

Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           V L       + DLPK   +K    + I  GC   CTYC   + R    S  VE ++  V
Sbjct: 123 VDLSDEIDKISADLPKHPYSKHHGWINIIYGCNKYCTYCIVPYTRHLEKSRPVEDIIKEV 182

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFIL 289
           +    +G +E+    ++  +YG+D G   P  LN ++ E    D    +    + P  I 
Sbjct: 183 KYYNDNGYREITFLGQNVDSYGKDFGDGKP-KLNILIKEAAKYDSIERIWFLTSYPSDIT 241

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           + L  I EV  +P      H+PVQ+GS+ +L AMNR+YT   +  +++ + + VP + I+
Sbjct: 242 DDL--IEEVANNPKAAKNFHLPVQAGSNNILRAMNRKYTREYYLELLEKIKKTVPKVTIS 299

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--KKVPSAVVKKRS 407
           +DII GFPGETDEDF +TV L+K+ ++ +++++++ PR GT +A+     +P  +  KR 
Sbjct: 300 SDIIVGFPGETDEDFEETVELVKKARYERLNLAEYSPREGTISAKYYEDNIPKRIKNKRF 359

Query: 408 RELTSV 413
           + L ++
Sbjct: 360 QYLMNI 365


>gi|229163255|ref|ZP_04291210.1| hypothetical protein bcere0009_40230 [Bacillus cereus R309803]
 gi|228620318|gb|EEK77189.1| hypothetical protein bcere0009_40230 [Bacillus cereus R309803]
          Length = 454

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 123/366 (33%), Positives = 194/366 (53%), Gaps = 18/366 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  +  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRQERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 RELTSV 413
             L  +
Sbjct: 357 HRLIEL 362


>gi|227824689|ref|ZP_03989521.1| RNA modification enzyme [Acidaminococcus sp. D21]
 gi|352685015|ref|YP_004897000.1| RNA modification enzyme [Acidaminococcus intestini RyC-MR95]
 gi|226905188|gb|EEH91106.1| RNA modification enzyme [Acidaminococcus sp. D21]
 gi|350279670|gb|AEQ22860.1| RNA modification enzyme [Acidaminococcus intestini RyC-MR95]
          Length = 435

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 132/358 (36%), Positives = 177/358 (49%), Gaps = 35/358 (9%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           +I   T GC  NQSD+  M       GY +    E +DI LINTC V +  Q     +I 
Sbjct: 4   SISFYTLGCKVNQSDTASMEKLFREAGYEIVPFGEASDICLINTCVVTNMGQGKSRRMIR 63

Query: 120 KC-KSAKKPL-VVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLH 175
           +  K   KPL VV GC PQ +  ++  LEGV + VG +   R+VE+VEE       RL  
Sbjct: 64  RTIKRDPKPLIVVTGCYPQTAPEEVAALEGVDLLVGNRDRARIVELVEE-------RLGE 116

Query: 176 RKKLPA---LDLP----------KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
           R   P    LDLP           V  ++    L I  GC   C+YC   +ARGHL S  
Sbjct: 117 RDAAPVNDVLDLPVGSEFEDLAASVDDSRDRAFLKIQEGCDQYCSYCIIPYARGHLRSRP 176

Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
           + S+   V  +  +G KEV L     G YG++   N   L +A+ A L       LR+G 
Sbjct: 177 LSSIRREVEHLTEEGYKEVVLLGIHLGCYGKETA-NGERLSDAVSAALSVPALCRLRLGS 235

Query: 283 TNPPFILEHLKEIAEVLR----HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
                 LE ++   E+LR     P     LH+P+QSG D +L AMNR Y  + F+ ++D 
Sbjct: 236 ------LESVEVQPELLRLMQEDPRFCCHLHLPLQSGCDKILKAMNRPYDTARFKELIDR 289

Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396
           +   VP + I TDII GFPGET+ DF QT+   +   F ++HI  +  R GTPAA  K
Sbjct: 290 IRAAVPDVAITTDIIVGFPGETEADFAQTLTFAEACGFAKIHIFPYSKRKGTPAAERK 347


>gi|302389477|ref|YP_003825298.1| MiaB family RNA modification protein [Thermosediminibacter oceani
           DSM 16646]
 gi|302200105|gb|ADL07675.1| RNA modification enzyme, MiaB family [Thermosediminibacter oceani
           DSM 16646]
          Length = 441

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 122/394 (30%), Positives = 194/394 (49%), Gaps = 26/394 (6%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC--K 122
           T GC  NQ +S+ MA      GY L    + AD+++INTCTV +        +I K   +
Sbjct: 15  TLGCKVNQYESDAMAELFKNRGYELVGFDDVADVYVINTCTVTNEGARKSRQIIRKAARR 74

Query: 123 SAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
           + +  + V GC  Q  + ++  + GV +V G +   ++V++VE+  K +E      K + 
Sbjct: 75  NPEATIAVVGCYAQLEAEEVSRIPGVDVVVGTKDRHKIVDLVEQAGKNNE------KIIE 128

Query: 181 ALDLPKVR----------RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
             D+ + R          R +    L I  GC   C+YC   + RG + S T+ES++   
Sbjct: 129 VEDIMQTRNFEEIAFRGHRQRTRAFLKIQEGCNMFCSYCIIPYVRGPVRSRTLESIIREA 188

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
             +  DG KE+ L+    G YG D     P L + I      +G   +R+       + +
Sbjct: 189 ENLAGDGFKEIVLTGIHLGLYGADFKGG-PTLYDVIERLSRIEGIKRIRLSSIEAMELSD 247

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
            L +    L + C +   H+P+QSGSD +L  MNR YT ++F   +  + +++P + I T
Sbjct: 248 DLIKKLASLDNFCHH--FHIPLQSGSDRILKLMNRRYTTAEFEERLRFIRDIMPDVGITT 305

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 409
           D+I GFPGETDEDF  T   I+   F ++H+ +F PR GTPAA M  ++P  V + RSRE
Sbjct: 306 DVIVGFPGETDEDFEITRKFIERAAFSRLHVFKFSPRKGTPAAEMPDQIPGPVKESRSRE 365

Query: 410 LTSVFEAFTPYL--GMEGRVERIWITEIAADGIH 441
           L  +          G+ G+V  +   E    G++
Sbjct: 366 LIRLSRRLERDFRDGLTGKVLDVLFEERDNRGLY 399


>gi|423528366|ref|ZP_17504811.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus HuB1-1]
 gi|402452029|gb|EJV83848.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus HuB1-1]
          Length = 509

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 195/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +  GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DVKYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|229019534|ref|ZP_04176351.1| hypothetical protein bcere0030_40370 [Bacillus cereus AH1273]
 gi|229025776|ref|ZP_04182175.1| hypothetical protein bcere0029_40670 [Bacillus cereus AH1272]
 gi|423389373|ref|ZP_17366599.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG1X1-3]
 gi|423417765|ref|ZP_17394854.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG3X2-1]
 gi|228735484|gb|EEL86080.1| hypothetical protein bcere0029_40670 [Bacillus cereus AH1272]
 gi|228741790|gb|EEL91973.1| hypothetical protein bcere0030_40370 [Bacillus cereus AH1273]
 gi|401106936|gb|EJQ14893.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG3X2-1]
 gi|401641464|gb|EJS59181.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG1X1-3]
          Length = 450

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 18/363 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  +++D+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 REL 410
             L
Sbjct: 357 HRL 359


>gi|218898872|ref|YP_002447283.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           cereus G9842]
 gi|228902275|ref|ZP_04066435.1| hypothetical protein bthur0014_34530 [Bacillus thuringiensis IBL
           4222]
 gi|228909596|ref|ZP_04073419.1| hypothetical protein bthur0013_37480 [Bacillus thuringiensis IBL
           200]
 gi|228966715|ref|ZP_04127759.1| hypothetical protein bthur0004_35210 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|402558900|ref|YP_006601624.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           thuringiensis HD-771]
 gi|423359242|ref|ZP_17336745.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD022]
 gi|423561820|ref|ZP_17538096.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus MSX-A1]
 gi|434376830|ref|YP_006611474.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           thuringiensis HD-789]
 gi|229890420|sp|B7ITM4.1|MIAB_BACC2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|218543596|gb|ACK95990.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9842]
 gi|228792814|gb|EEM40372.1| hypothetical protein bthur0004_35210 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228849885|gb|EEM94716.1| hypothetical protein bthur0013_37480 [Bacillus thuringiensis IBL
           200]
 gi|228857390|gb|EEN01890.1| hypothetical protein bthur0014_34530 [Bacillus thuringiensis IBL
           4222]
 gi|401085114|gb|EJP93360.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD022]
 gi|401202077|gb|EJR08942.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus MSX-A1]
 gi|401787552|gb|AFQ13591.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           thuringiensis HD-771]
 gi|401875387|gb|AFQ27554.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
           thuringiensis HD-789]
          Length = 509

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 195/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +  GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DVEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|423549948|ref|ZP_17526275.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           ISP3191]
 gi|401189564|gb|EJQ96614.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           ISP3191]
          Length = 450

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 192/363 (52%), Gaps = 18/363 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  +  E+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKNYNLAGLLRDMETEV--GGLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 REL 410
             L
Sbjct: 357 HRL 359


>gi|423483893|ref|ZP_17460583.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG6X1-2]
 gi|401141444|gb|EJQ48999.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG6X1-2]
          Length = 450

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 130/394 (32%), Positives = 201/394 (51%), Gaps = 20/394 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  +++D+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADG 439
             L  +            EG V  I   E   DG
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKDG 390


>gi|423615348|ref|ZP_17591182.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD115]
 gi|401261027|gb|EJR67194.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           VD115]
          Length = 450

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 18/363 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  +++D+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+  DG   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--DGLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GT AARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTAAARMEDQVPEDVKNDRV 356

Query: 408 REL 410
             L
Sbjct: 357 HRL 359


>gi|383753868|ref|YP_005432771.1| putative tRNA-thiotransferase [Selenomonas ruminantium subsp.
           lactilytica TAM6421]
 gi|381365920|dbj|BAL82748.1| putative tRNA-thiotransferase [Selenomonas ruminantium subsp.
           lactilytica TAM6421]
          Length = 446

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/375 (32%), Positives = 194/375 (51%), Gaps = 20/375 (5%)

Query: 55  IPGTETIYMK--TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
           I G    Y+K   +GC  N +D+E MAGQL+A GY  T++++ AD+ +INTC V+  ++ 
Sbjct: 4   IDGKAHRYVKFLVYGCQMNVADAERMAGQLAAIGYERTEDTDIADLLIINTCAVRETAED 63

Query: 113 AMDTLIAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEE 164
            +   I + K  K+        + GC+ Q   D  +K    +  V G  Q+  + +VV+E
Sbjct: 64  KVYGKIGEIKKLKRENPQLIFGITGCMAQKESDKLIKRAPHIDFVLGTGQVHELTKVVQE 123

Query: 165 TL--KGHEVRL-LHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
               +GH V   L  K  PA+    P  R       +PI  GC   CTYC   + RG   
Sbjct: 124 IQQERGHVVNTALDAKVAPAIAEGSPIAREGSLSAWVPIMYGCNNFCTYCIVPYVRGRER 183

Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279
           S   E +V  V   +A G KEV L  ++  +YG+D  +     L  +V ++  +G   +R
Sbjct: 184 SRRPEDVVKEVEQAVAQGYKEVTLLGQNVNSYGKDHKLATFAELLKMVDKV--EGIKRVR 241

Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
              ++P  + + + +      H C +  +H+PVQ GS+ +L AMNR YT+  +R +V  +
Sbjct: 242 FMTSHPKDLSDEVIDAIAEGEHLCEH--IHLPVQYGSNHLLKAMNRVYTVESYRELVKKI 299

Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KV 398
              +P   + TD+I GFPGET++DF Q ++ +KE ++   +   +  R GTPAA M+ +V
Sbjct: 300 RAKLPHASLTTDLIVGFPGETEDDFAQMLDFLKEIRYDSAYTFIYSKRSGTPAAEMENQV 359

Query: 399 PSAVVKKRSRELTSV 413
             AV K+R   L +V
Sbjct: 360 DDAVKKERLNALMAV 374


>gi|345848843|ref|ZP_08801861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           zinciresistens K42]
 gi|345639713|gb|EGX61202.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           zinciresistens K42]
          Length = 495

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/395 (31%), Positives = 196/395 (49%), Gaps = 22/395 (5%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQSAM 114
           G +T  ++T+GC  N  DSE ++G L   GY  A    + +AD+ + NTC V+  + + +
Sbjct: 2   GVKTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGANGDADVVVFNTCAVRENADNKL 61

Query: 115 DTLIA-----KCKSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL 166
              +      K +     + V GC+ Q  RD  ++    V +V G   I ++  ++E   
Sbjct: 62  YGNLGHLAPMKTRRPGMQIAVGGCLAQKDRDTIVRRAPWVDVVFGTHNIGKLPVLLERAR 121

Query: 167 KGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
              E ++   + L A    LP  R + +   + I+VGC   CT+C     RG        
Sbjct: 122 VQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTG 181

Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGM 282
            ++  V  ++A+GV E+ L  ++  AYG DIG       LL A  A    DG   +R   
Sbjct: 182 DILAEVEALVAEGVSEITLLGQNVNAYGSDIGDREAFGKLLRACGA---IDGLERVRFTS 238

Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
            +P    + +  IA +   P V   LH+P+QSGSD VL AM R Y    +  +++ +   
Sbjct: 239 PHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRAA 296

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 401
           +P   I TDII GFPGET+EDF QT+++++E +F Q    Q+  RPGTPAA M+ ++P  
Sbjct: 297 IPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAATMEDQIPKQ 356

Query: 402 VVKKRSRELTSVFE--AFTPYLGMEGRVERIWITE 434
           VV+ R   L ++ E  ++    G  GR   + + E
Sbjct: 357 VVQARYERLVALQEEISWEENRGQVGRTLELMVAE 391


>gi|423385277|ref|ZP_17362533.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG1X1-2]
 gi|401635333|gb|EJS53088.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG1X1-2]
          Length = 509

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 195/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +  GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DVKYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|420199076|ref|ZP_14704760.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM031]
 gi|394272762|gb|EJE17212.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM031]
          Length = 514

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 190/365 (52%), Gaps = 16/365 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L+A GY+ T + +EAD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDIDEADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V +V G   I  + E++EE    K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G +E+ L  ++  +YG+DI   L   L  ++ ++       +R   ++P  
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  + +   +   +H+PVQSG++ VL  M R+YT   +  +V  + E +P + 
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEAIPNVA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T++L  + +F   +   +  R GTPAA+MK  VP  V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVPLEVKKER 425

Query: 407 SRELT 411
            + L 
Sbjct: 426 LQRLN 430


>gi|291522428|emb|CBK80721.1| SSU ribosomal protein S12P methylthiotransferase [Coprococcus catus
           GD/7]
          Length = 454

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 190/360 (52%), Gaps = 12/360 (3%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI 118
           TI+  + GC  N  DSE M G L A G+ L D+  EADI ++NTC+ +    + ++ T++
Sbjct: 10  TIFFVSLGCDKNLVDSEVMLGILRAHGFTLVDDEIEADIIVVNTCSFIHDAKEESIQTIL 69

Query: 119 A----KCKSAKKPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEV 171
                K     K L+V GC+ +  +D  + E+E V +++G      + EVV E L+G +V
Sbjct: 70  EMAEMKHSCRCKALIVTGCMAERYKDEIMTEIEEVDAVIGTTSYQHIAEVVAEVLEGQKV 129

Query: 172 RLLHR-KKLPALDLPKVRRNK-FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           +     + +P +D+ ++     +   L I  GC   CTYC     RG   S++++ L+ +
Sbjct: 130 KQFDDLQAMPEVDVQRIMTTGGYSSYLKIAEGCDKHCTYCIIPKLRGSYRSHSMDYLIKQ 189

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
             ++ A GVKE+ + +++T  YG D+     +L   +      +G + +R+    P  I 
Sbjct: 190 AESLAAQGVKELNIVAQETTVYGTDLYNGQKMLPELLKRLCRIEGLSWIRVLYCYPEEIN 249

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           E L ++  +   P +  +L +P+Q GSDAVL  M R  T ++ R+++  L E +P + + 
Sbjct: 250 EELIQV--IKEEPKICHYLDLPIQHGSDAVLKRMGRRTTQAELRSIIGRLREEIPDIALR 307

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 409
           T +I GFPGET+ D  + +  +K+ +F ++ +  +    GTPAA+M       VK+  R+
Sbjct: 308 TTLIAGFPGETEADHQEALQFVKDMRFDRLGVFTYSEEEGTPAAQMPDQIDEAVKETRRD 367


>gi|451343574|ref|ZP_21912645.1| MiaB-like tRNA modifying enzyme [Eggerthia catenaformis OT 569 =
           DSM 20559]
 gi|449337671|gb|EMD16828.1| MiaB-like tRNA modifying enzyme [Eggerthia catenaformis OT 569 =
           DSM 20559]
          Length = 435

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 189/371 (50%), Gaps = 22/371 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI-- 118
           +  +T GC  N  +SE M       GY   D  E++DI++INTCTV +   +    +I  
Sbjct: 4   VAFQTLGCKVNSYESEGMLELFKKKGYESVDFKEKSDIYVINTCTVTNTGDAKSRQMIRR 63

Query: 119 AKCKSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG-------H 169
           A+ ++    + V GC  Q  S  + +++GV IV G Q  +++VE VE+ LK        H
Sbjct: 64  ARKRNPNSIIAVVGCYAQIASAAVADIDGVDIVIGTQNKNKIVEYVEDYLKNKQQIIDVH 123

Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           +V  L  K    L++     N+    + I  GC   CT+C   +ARG + S   E ++ +
Sbjct: 124 DVMKL--KSFEDLNIASFE-NRTRAFMKIQDGCNNFCTFCIIPYARGAIRSRDKEDVIRQ 180

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            + ++  G  E+ L+   T  YG D+   +   LL  +  ++   G   LRI       +
Sbjct: 181 AQELVDKGFVEIVLTGIHTAGYGIDLEDYSFYDLLKDLTNKVK--GLKRLRISSIEMSQV 238

Query: 289 LEHLKEIAEVLRHPCVY-SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
                +I  ++ H  +    LH+P+QSG+D +L  M R YT S+F   ++ L E +P + 
Sbjct: 239 TP---DIINLMAHSSIIVDHLHIPIQSGNDKILKKMARHYTTSEFEEKLNKLKEALPNLS 295

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 406
           + TD+I GFPGET+EDF  T   IK+  F Q+H+  +  R GTPAARM  ++P  + KKR
Sbjct: 296 VTTDVIVGFPGETEEDFESTYQWIKKNHFNQLHVFPYSARTGTPAARMPYQIPGDIKKKR 355

Query: 407 SRELTSVFEAF 417
            + L  + ++ 
Sbjct: 356 VKRLLQLSDSL 366


>gi|73662777|ref|YP_301558.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|123775346|sp|Q49X85.1|MIAB_STAS1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|72495292|dbj|BAE18613.1| putative 2-methylthioadenine synthetase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 513

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/373 (31%), Positives = 188/373 (50%), Gaps = 16/373 (4%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T  +KT+GC  N  D+E MAG L A GY  T++   AD+ LINTC ++  +++ + + I
Sbjct: 67  KTFLIKTYGCQMNAHDTEVMAGILGALGYTPTEDINHADVILINTCAIRENAENKVFSEI 126

Query: 119 AKCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL-- 166
              K  KK      + V GC+ Q     ++ LK  + V ++ G   I R+ E++EE    
Sbjct: 127 GNLKHLKKEKPETVIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAYLS 186

Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
           K   V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E +
Sbjct: 187 KAMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDI 246

Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
           +  VR +   G KE+ L  ++  AYG+DI   L   L  ++ ++       +R   ++P 
Sbjct: 247 IDEVRDLARQGYKEITLLGQNVNAYGKDID-GLAYGLGDLLEDISKIDIPRVRFTTSHPW 305

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
              + + E+  +     +   +H+PVQSG++AVL  M R+YT   +  +V+ +   +P +
Sbjct: 306 DFTDRMIEV--IANGGNIVPHVHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIKTHIPNV 363

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
            + TDII G+P ETDE F +T+ L  E +F   +   +  R GTPAA+M   VP  V K 
Sbjct: 364 ALTTDIIVGYPNETDEQFEETLTLYDEVEFEHAYTYIYSQRDGTPAAKMNDNVPLDVKKD 423

Query: 406 RSRELTSVFEAFT 418
           R ++L      ++
Sbjct: 424 RLQQLNKKVACYS 436


>gi|418576319|ref|ZP_13140465.1| putative 2-methylthioadenine synthetase [Staphylococcus
           saprophyticus subsp. saprophyticus KACC 16562]
 gi|379325381|gb|EHY92513.1| putative 2-methylthioadenine synthetase [Staphylococcus
           saprophyticus subsp. saprophyticus KACC 16562]
          Length = 513

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 186/366 (50%), Gaps = 16/366 (4%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T  +KT+GC  N  D+E MAG L A GY  T++   AD+ LINTC ++  +++ + + I
Sbjct: 67  KTFLIKTYGCQMNAHDTEVMAGILGALGYTPTEDINHADVILINTCAIRENAENKVFSEI 126

Query: 119 AKCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL-- 166
              K  KK      + V GC+ Q     ++ LK  + V ++ G   I R+ E++EE    
Sbjct: 127 GNLKHLKKEKPETVIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAYLS 186

Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
           K   V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E +
Sbjct: 187 KAMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDI 246

Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
           +  VR +   G KE+ L  ++  AYG+DI   L   L  ++ ++       +R   ++P 
Sbjct: 247 IDEVRDLARQGYKEITLLGQNVNAYGKDID-GLAYGLGDLLEDISKIDIPRVRFTTSHPW 305

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
              + + E+  +     +   +H+PVQSG++AVL  M R+YT   +  +V+ +   +P +
Sbjct: 306 DFTDRMIEV--IANGGNIVPHVHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIKTHIPNV 363

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
            + TDII G+P ETDE F +T+ L  E +F   +   +  R GTPAA+M   VP  V K 
Sbjct: 364 ALTTDIIVGYPNETDEQFEETLTLYDEVEFEHAYTYIYSQRDGTPAAKMNDNVPLDVKKD 423

Query: 406 RSRELT 411
           R ++L 
Sbjct: 424 RLQQLN 429


>gi|260907232|ref|ZP_05915554.1| RNA modification enzyme, MiaB family protein [Brevibacterium linens
           BL2]
          Length = 498

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/384 (31%), Positives = 194/384 (50%), Gaps = 31/384 (8%)

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
           +KT+GC  N  DSE ++G L   GY   D  ++AD+ + NTC V+  + + +   + +  
Sbjct: 20  VKTYGCQMNVHDSERLSGLLDDAGYVPADTDDQADVIVFNTCAVRENADNRLYGNLGQLA 79

Query: 123 SAKK-----PLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VR 172
             K+      + V GC+ Q  RD  +K+   V +V G   +  +  ++E      E  V 
Sbjct: 80  HVKERNPDFQIAVGGCMAQKDRDTIVKKAPWVDVVFGTHNMGSLPALLERARHNQEAQVE 139

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           +L    +    LP  R ++    + I+VGC  +CT+C     RG         ++  V  
Sbjct: 140 ILESLDVFPSTLPSRRESQHSGWVSISVGCNNSCTFCIVPSLRGKEKDRRPGDILAEVEA 199

Query: 233 VIADGVKEVWLSSEDTGAYG---RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP---P 286
           ++ADGV EV L  ++  +YG   RD G    +L      E       + R+  T+P    
Sbjct: 200 LVADGVVEVTLLGQNVNSYGSEFRDKGAFAKLLRAVGKVE------GIERVRFTSPHPAS 253

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
           F  + +  +AE    P V   LH+P+QSGSD++L +M R Y  S F  ++D++ E +P  
Sbjct: 254 FSDDVIDAMAET---PAVMPQLHMPLQSGSDSILKSMRRSYRTSRFMRILDSVREKIPNA 310

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 405
            I TDII GFPGET+EDF  T+++++  +F Q    Q+  RPGTPAA M  +VP  +V++
Sbjct: 311 AITTDIIVGFPGETEEDFLGTMDIVRRARFSQAFTFQYSIRPGTPAATMDDQVPKHIVQE 370

Query: 406 RSRELTSV-----FEAFTPYLGME 424
           R   LT++     +E  T  +G E
Sbjct: 371 RFERLTALQDEISWEENTAQIGRE 394


>gi|147677673|ref|YP_001211888.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pelotomaculum
           thermopropionicum SI]
 gi|229890589|sp|A5D2K1.1|MIAB_PELTS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|146273770|dbj|BAF59519.1| 2-methylthioadenine synthetase [Pelotomaculum thermopropionicum SI]
          Length = 448

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/368 (31%), Positives = 192/368 (52%), Gaps = 29/368 (7%)

Query: 66  FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
           FGC  N+ DSE +AG L + GY    NSE+ DI LINTC V+  +++ + +L+ + +  K
Sbjct: 9   FGCQMNEHDSEVLAGILESMGYCQAGNSEDPDIILINTCCVRKTAENKVFSLLGRLRRQK 68

Query: 126 KP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEVRLLH 175
                  + V GC+PQ     + ++ +      I G   + ++ E++ + ++G +  L  
Sbjct: 69  AQNPNLIIGVCGCMPQQEGMAERIKQLFPHVDLIFGTHNVHQLPELIGKVIEGQKQVL-- 126

Query: 176 RKKLPAL------DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
            +  P        +LP  R+      + I  GC   CTYC   + RG   S + E++   
Sbjct: 127 -EIWPGYGGELREELPVKRKEGVRAWVTIMYGCNNFCTYCIVPYVRGREKSRSPEAVYEE 185

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGV--NLPILLNAIVAELPPDGSTMLRIGMTNP-P 286
           V  +  +G KEV L  ++  +YG+D+GV  +   LL ++      DG   +R   ++P  
Sbjct: 186 VARLAGEGFKEVILLGQNVNSYGKDLGVKTDFASLLESLEN---IDGIDRIRYMTSHPRD 242

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
           F L  ++ IA   +   V    H+PVQ+GS+ +L  MNR YT  ++  ++  +  L+P  
Sbjct: 243 FSLRLVEAIAASKK---VCEHFHLPVQAGSNRILKKMNRGYTREEYVDLIRYIKSLIPHA 299

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 405
            + TDI+ GFPGETDEDFN T++L++E +F   +   +  RPGTPAA M  +V   V K+
Sbjct: 300 TVTTDIMVGFPGETDEDFNDTLDLVREIRFDSAYTFVYNIRPGTPAAEMPDQVAENVKKE 359

Query: 406 RSRELTSV 413
           R + L  +
Sbjct: 360 RIQALIKL 367


>gi|221194392|ref|ZP_03567449.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium rimae ATCC
           49626]
 gi|221185296|gb|EEE17686.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium rimae ATCC
           49626]
          Length = 455

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/377 (32%), Positives = 190/377 (50%), Gaps = 23/377 (6%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T ++KTFGC  N  DSE + G L   G    +++++ADI +  TC+V+  +   +    
Sbjct: 10  KTYHIKTFGCQMNLHDSERVRGLLDVCGCNEVESTDDADIVIFMTCSVRENADQRLYGQA 69

Query: 119 AKCKSA------KKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
           +   SA      K+ + + GC+ Q  G    K++  V +V G   +  V  ++       
Sbjct: 70  SAMVSAPTPPSGKRVVAIGGCIAQRDGEALKKKVPAVDVVFGTSALASVPSLLSAAFADD 129

Query: 170 E----VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
           +    V      K  + DLP  R   F   +PI  GC   CTYC   + RG   S T E+
Sbjct: 130 DDSVKVDTSEEHKGFSTDLPSHRDQVFHAWVPIMTGCNNFCTYCIVPYVRGRERSRTFEA 189

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
           +VG    ++ADGV+E+ L  ++  +YGRD+    P     + A +   G   LR   +NP
Sbjct: 190 VVGECERLVADGVREITLLGQNVNSYGRDL-YGTPRFAELLRA-VGKTGIERLRFTSSNP 247

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             + +  + IA +   P V   LH+ VQSGS  +L  MNR YT  ++  +V  L   +P 
Sbjct: 248 KDLTD--ETIAAMKETPAVMPHLHLAVQSGSTRILKKMNRSYTREEYLDLVHRLKAAMPD 305

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS-AVVK 404
           +  +TDII GFPGET+EDF QT++L+KE  +   +   +  RPGTPAA+ +   S  V++
Sbjct: 306 IAFSTDIIVGFPGETEEDFEQTLSLVKEAAYSSAYTFIYSKRPGTPAAKFEDNTSHEVIQ 365

Query: 405 KRSRELTSV-----FEA 416
           +R   LT +     FEA
Sbjct: 366 ERFNRLTDLVAKQAFEA 382


>gi|194476570|ref|YP_002048749.1| hypothetical protein PCC_0084 [Paulinella chromatophora]
 gi|171191577|gb|ACB42539.1| hypothetical protein PCC_0084 [Paulinella chromatophora]
          Length = 470

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 195/393 (49%), Gaps = 25/393 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T ++ TFGC  N++DSE MAG L + GY +  +  EAD+ L NTCT++  ++  + + + 
Sbjct: 27  TYWITTFGCQMNKADSERMAGILESIGYQIAPSEHEADLVLYNTCTIRDSAEQKVYSYLG 86

Query: 120 KCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
           +    K+      L+VAGCV Q  G+  L+ +  + +V G QQ +R+  ++ +   G +V
Sbjct: 87  RQAQRKRTNPHIILIVAGCVAQQEGASLLRRVPEIDLVMGPQQTNRLSYLLSQVENGQQV 146

Query: 172 RLLHRKKLPALDLPKVRRNKFV-EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
            +   +     D+   RR   V   + +  GC   CTYC     RG   S   ES+   +
Sbjct: 147 -IATEESYILEDITNARRESSVCGWVNVVYGCNERCTYCVVPSVRGKEQSRLPESIKMEM 205

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GV-------NLPILLNAIVAELPPDGSTMLRIGM 282
             +   G +EV L  ++  AYGRD+ G+       N    L   V E+   G   +R   
Sbjct: 206 EILATQGFREVTLLGQNVDAYGRDLAGISPEGRRHNTLTALLYFVHEVK--GINRIRFAT 263

Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
           ++P +  E L E    L   C +   H+P QSG D VL  M R Y +  +  +VD +   
Sbjct: 264 SHPRYFTERLIEACSNLSKVCEH--FHIPCQSGDDEVLKTMARGYNVDRYYRIVDRIRSR 321

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 401
           +P   I+ DII  FPGETD  + +T+ L+++  F QV+ + + PRP TPA+    +V   
Sbjct: 322 MPDASISADIIVAFPGETDTQYQRTLELVEKVGFDQVNTAAYSPRPNTPASNWSIQVDER 381

Query: 402 VVKKRSRELTSVFE--AFTPYLGMEGRVERIWI 432
           +  +R ++L S+ E  AF        R+E I I
Sbjct: 382 IKVERLQQLNSLVEKKAFERSKRYLNRIEEILI 414


>gi|410667735|ref|YP_006920106.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           [Thermacetogenium phaeum DSM 12270]
 gi|409105482|gb|AFV11607.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           [Thermacetogenium phaeum DSM 12270]
          Length = 459

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/380 (31%), Positives = 185/380 (48%), Gaps = 34/380 (8%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            ++ T+GC  N  DSE M   L   GY  T+  EEADI+++NTC+V+  ++      +  
Sbjct: 9   FFIATWGCQMNSHDSEIMRAILEKNGYQWTERQEEADIFILNTCSVRRHAEQRAIGFLGN 68

Query: 121 CKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE 170
            K+ K+      + V GC PQ     + LE  +     I G +   R+ E +   +    
Sbjct: 69  LKNLKERNPELIIAVGGCAPQNPEVREYLEKKAPHVDIIFGTRNYHRLPEFLNRVM---- 124

Query: 171 VRLLHRKKLPALD---------LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
              + R ++ ALD         LP    +     + I  GC   C+YC   + RG   S 
Sbjct: 125 ---VKRSRVIALDGEDEDLPGLLPAHHTSTVKAYVTIMYGCNNFCSYCIVPYTRGREKSR 181

Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLR 279
            +E +   V+ + A G KEV L  ++  +YG+D+   +N   LL A + ++P  G   +R
Sbjct: 182 PLEEIYQEVQELAAKGYKEVMLLGQNVNSYGKDLPGAINFAKLL-AHLDKIP--GLARIR 238

Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
              ++P    + L E     R  C +   H+P+Q+GS+ +L  MNR YT   +  + D +
Sbjct: 239 YMTSHPRDFDDELIETIAATRKVCEH--FHLPLQAGSNRILQLMNRGYTREKYIQLTDKI 296

Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KV 398
              +PG  I TDII GFPGET++DF  T++L++  +F   +   + PR GTPAA M+ +V
Sbjct: 297 KNKIPGASITTDIIVGFPGETEDDFLDTLDLVQTVRFDAAYTFMYSPRRGTPAAEMENQV 356

Query: 399 PSAVVKKRSRELTSVFEAFT 418
           PS + K R   L  V    T
Sbjct: 357 PSEIKKDRLNRLVDVQNRIT 376


>gi|423452926|ref|ZP_17429779.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG5X1-1]
 gi|423522397|ref|ZP_17498870.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus HuA4-10]
 gi|401139485|gb|EJQ47047.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BAG5X1-1]
 gi|401175091|gb|EJQ82294.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus HuA4-10]
          Length = 509

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/397 (29%), Positives = 204/397 (51%), Gaps = 29/397 (7%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +  GY  T ++EEAD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G +E+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYREITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL ++  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+M+  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424

Query: 408 RELTSVFEAFT-----PYLGMEGRVERIWITEIAADG 439
           + L ++   +       Y+G         I E+  DG
Sbjct: 425 QRLNTLVNEYAVNKNKRYIGQ--------IVEVLVDG 453


>gi|427727572|ref|YP_007073809.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Nostoc sp. PCC 7524]
 gi|427363491|gb|AFY46212.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Nostoc sp. PCC 7524]
          Length = 454

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/396 (31%), Positives = 201/396 (50%), Gaps = 31/396 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+   ++   AD+ L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEDMGFEFCEDPNHADVILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K       LVVAGCV Q  G   L+ +  + +V G Q  +R+ +++E    G++V  
Sbjct: 69  AKRKHEQPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ + RR+  V    +NV  GC   CTYC   + RG   S T E++   + 
Sbjct: 129 TEAVHIME-DITQARRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRTEME 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
            +   G KE+ L  ++  AYGRD+      G +L    + +  V ++P  G   LR   +
Sbjct: 187 QLGQQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTFTDLLYYVHDVP--GVERLRFATS 244

Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
           +P +  E L K  AE+   P V    H+P QSG + +L AM R YT   +R ++DT+   
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNELLKAMARGYTHEKYRRIIDTIRHY 301

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
           +P   I+ D I GFPGET+  F  T+ L+ +  F Q++ + + PRPGTPAA      S  
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWSNQLSEE 361

Query: 403 VK----KRSRELTSVFEAFTPYLGMEGRVERIWITE 434
           VK    +R   L +V +A       +GR+E + + +
Sbjct: 362 VKSDRLQRLNHLVNV-KAAERSQRYQGRIEEVLVED 396


>gi|228916942|ref|ZP_04080503.1| hypothetical protein bthur0012_41550 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|301055802|ref|YP_003794013.1| hypothetical protein BACI_c42790 [Bacillus cereus biovar anthracis
           str. CI]
 gi|228842663|gb|EEM87750.1| hypothetical protein bthur0012_41550 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300377971|gb|ADK06875.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 450

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 192/363 (52%), Gaps = 18/363 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  +  E+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMETEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 REL 410
             L
Sbjct: 357 HRL 359


>gi|392971900|ref|ZP_10337292.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus equorum
           subsp. equorum Mu2]
 gi|403046776|ref|ZP_10902245.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           sp. OJ82]
 gi|392509613|emb|CCI60582.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus equorum
           subsp. equorum Mu2]
 gi|402763472|gb|EJX17565.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           sp. OJ82]
          Length = 513

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/366 (31%), Positives = 187/366 (51%), Gaps = 16/366 (4%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T  +KT+GC  N  D+E MAG L A GY  T++   AD+ LINTC ++  ++S + + I
Sbjct: 67  KTFLIKTYGCQMNAHDTEVMAGILGALGYTATEDINHADVILINTCAIRENAESKVFSEI 126

Query: 119 AKCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL-- 166
              K  K+      + V GC+ Q     ++ LK  + V I+ G   I R+ E++EE    
Sbjct: 127 GNLKHLKREKPETVIGVCGCMSQEESVVNKILKSYQNVDIIFGTHNIHRLPEILEEAYLS 186

Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
           K   V +  ++     +LPKVR+      + I  GC   CTYC     RG   S   E +
Sbjct: 187 KAMVVEVWSKEGDVIENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDI 246

Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
           +  VR +   G +E+ L  ++  AYG+DI   L   L  ++ ++       +R   ++P 
Sbjct: 247 IAEVRDLARQGYQEITLLGQNVNAYGKDIE-GLEYGLGDLLEDITQIDIPRVRFTTSHPW 305

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
              + + E+  +     +   +H+PVQSG++AVL  M R+YT   +  +V+ +   +P +
Sbjct: 306 DFTDRMIEV--IANGGNIVPHVHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIKTKIPNV 363

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
            + TDII G+P ET+  F +T+ L  E +F   +   +  R GTPAA+MK  VP  V K 
Sbjct: 364 ALTTDIIVGYPNETEAQFEETLTLYDEVEFEHAYTYIYSQRDGTPAAKMKDNVPLEVKKD 423

Query: 406 RSRELT 411
           R ++L 
Sbjct: 424 RLQQLN 429


>gi|75760978|ref|ZP_00740984.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491542|gb|EAO54752.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 515

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 195/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +  GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 83  FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 142

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 143 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 202

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 203 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 262

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 263 EIRHLAANGYKEITLLGQNVNAYGKDFE-DVEYGLGDLMDELRKVDIARIRFTTSHPRDF 321

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 322 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 379

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 380 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 439

Query: 408 RELTSV 413
           + L ++
Sbjct: 440 QRLNTL 445


>gi|89100455|ref|ZP_01173317.1| hypothetical protein B14911_05476 [Bacillus sp. NRRL B-14911]
 gi|89084798|gb|EAR63937.1| hypothetical protein B14911_05476 [Bacillus sp. NRRL B-14911]
          Length = 450

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 190/365 (52%), Gaps = 16/365 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  TD    +D+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQEGYERTDFESASDVYIINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
           +   K+    + V GC  Q S  ++  + GV IV G Q   +++E +E+  +  +     
Sbjct: 63  RAIRKNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRVKMLEYIEQYKQERQPINAV 122

Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
             ++  +    LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 GNIMKNRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEVIRQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG D+   NL +LL  + A++   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNLAMLLRDLEAQVK--GLKRLRISSIEASQIT 239

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           + + E+ +  +   V   LH+P+QSGS+ VL  M R+YT+  F   +D L E +PG+ + 
Sbjct: 240 DEVIEVMD--KSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLDRLKEALPGLAVT 297

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
           +D+I GFPGET+E+F +T N IKE+KF ++H+  +  R GTPAARM+ ++   +  +R  
Sbjct: 298 SDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQIDEEIKNERVH 357

Query: 409 ELTSV 413
            L S+
Sbjct: 358 RLISL 362


>gi|404482175|ref|ZP_11017402.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridiales bacterium
           OBRC5-5]
 gi|404344336|gb|EJZ70693.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridiales bacterium
           OBRC5-5]
          Length = 475

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 186/360 (51%), Gaps = 26/360 (7%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           TFGC  N  DSE ++G L+  GY   +N E+AD+ L NTCTV+  +   +   +   K +
Sbjct: 41  TFGCQMNARDSEKLSGILTGIGYMEAENEEDADLVLFNTCTVRENANDRLYGRVGHLKKS 100

Query: 125 KKP-----LVVAGCVPQGSRDLKELEGVS--------IVGVQQIDRVVEVVEE--TLKGH 169
           K+      + + GC+ Q   +++E+E +         + G   I ++ E++ E  T K  
Sbjct: 101 KEKNPDMIIGICGCMMQ---EVEEVEKIKKSYRHVDLVFGTHNIYKLAEILFEHLTTKKQ 157

Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
            V ++   ++    LP  R   F   + I  GC   C+YC   + RG   S   E ++  
Sbjct: 158 VVNVMESAEMIVEKLPNKREFAFKSGVNITFGCNNFCSYCIVPYVRGRERSRKPEEIIDE 217

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
           ++ ++ADGVKE+ L  ++  +YGR +   ++   LL+ I      DG   LR    +P  
Sbjct: 218 IKGLVADGVKEIMLLGQNVNSYGRGLEEEISFATLLDRIAQ---IDGLERLRFMTPHPKD 274

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           + + + E+ +  +  C +  LH+P+QSGS  +L  MNR YT   +  +V  +   +P + 
Sbjct: 275 LSDEVIEVMKKNKKICKH--LHLPLQSGSSDILKKMNRVYTKEGYLDLVRRIKAAIPDIS 332

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII GFPGET+ DF  T++++KE ++       +  R GTPAA+M+ ++   V+K R
Sbjct: 333 LTTDIIVGFPGETERDFLDTLDVVKEVRYDSAFTFIYSKRSGTPAAKMEDQIDPKVIKDR 392


>gi|434386620|ref|YP_007097231.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Chamaesiphon minutus PCC 6605]
 gi|428017610|gb|AFY93704.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Chamaesiphon minutus PCC 6605]
          Length = 450

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/356 (32%), Positives = 183/356 (51%), Gaps = 24/356 (6%)

Query: 56  PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
           P   + ++ TFGC  N++DSE M G L   G+  +D+   AD+ L NTCT++  ++  + 
Sbjct: 3   PIDRSYHITTFGCQMNKADSERMGGILEDMGFQWSDDPFTADLVLYNTCTIRDLAEQKVY 62

Query: 116 TLIAKCKSAKKP-----LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEET 165
           + + K    KK      L++AGCV Q       R + EL+   I+G Q  +R+ +++++ 
Sbjct: 63  SYLGKQTRRKKDNPDLVLIMAGCVAQQEGEALLRRIPELD--LIMGPQHANRLEDLLQQV 120

Query: 166 LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTV 223
             G +V       +   D+ K RR+  V    +NV  GC   CTYC   + RG   S T 
Sbjct: 121 FSGAQVVATEPIHIIE-DITKPRRDSSVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTP 178

Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTM 277
           E++   ++ +   G KEV L  ++  AYGRD+      G +   L + +      +G   
Sbjct: 179 EAIRAEIKELARQGYKEVTLLGQNIDAYGRDLPGSTVEGRHSHTLTDLLYYIHDIEGIER 238

Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
           +R   ++P +  E L  I      P V    HVP QSG + +L AM+R YT   +R +VD
Sbjct: 239 IRFATSHPRYFTERL--IKACTELPKVCEHFHVPFQSGDNDILKAMSRGYTHEKYRRIVD 296

Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393
           T+ + +P   I+ D I GFPGET+E F +T+ LI +  F  V+ + + PRP TPAA
Sbjct: 297 TIRKYMPDASISADAIVGFPGETEEQFERTLELIADVGFDMVNTAAYSPRPNTPAA 352


>gi|322689418|ref|YP_004209152.1| hypothetical protein BLIF_1234 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460754|dbj|BAJ71374.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 480

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/397 (30%), Positives = 196/397 (49%), Gaps = 27/397 (6%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTD--NSEEADIWLINTCTVKSPSQS 112
           G    ++ T GC  N  DSE +AG L A GY  A  D  N  + D+ ++NTC V+  +  
Sbjct: 23  GKGVFHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQINDNDLDLLVLNTCAVRENAAE 82

Query: 113 AMDTLIAKCKSAK--KP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVV 162
            M   I +    K  +P   + V GC+ Q  R  K++   +     + G + I+ + +++
Sbjct: 83  RMYGTIGRFNRVKLVRPNLQIAVGGCMAQLDR--KKIADTAPWVSAVFGTKNIEDLPKLL 140

Query: 163 EETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
           ++     + ++   ++L      LP  R ++    + I+VGC   CT+C     RG    
Sbjct: 141 DQNRATGKAQVQVTEQLRQFPSQLPAARASRISSWVAISVGCNNTCTFCIVPTTRGKEKD 200

Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTML 278
                ++  +R  +ADG KEV L  ++  ++G  IG       LL A       DG   +
Sbjct: 201 RRPGDILDEIRQCVADGAKEVTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERV 257

Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
           R    +P    + +  IA +   P +   LH P+QSGSD +L AM R Y  + F  ++  
Sbjct: 258 RFTSPHPAAFTDDV--IAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 315

Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 398
           + E +P  QI+TDII GFPGET+EDF QT++++++ +F       + PRPGTPAA M+++
Sbjct: 316 IREAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAMEQI 375

Query: 399 PSAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWIT 433
           P  VV+ R   L ++ E  T       EGR   + IT
Sbjct: 376 PRDVVQDRFDRLVALQEQITEENLATFEGRDVEVMIT 412


>gi|229061375|ref|ZP_04198721.1| hypothetical protein bcere0026_34620 [Bacillus cereus AH603]
 gi|228717914|gb|EEL69560.1| hypothetical protein bcere0026_34620 [Bacillus cereus AH603]
          Length = 509

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 195/370 (52%), Gaps = 16/370 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +  GY  T ++EEAD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPALIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
             HL ++  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DNHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+M+  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424

Query: 408 RELTSVFEAF 417
           + L ++   +
Sbjct: 425 QRLNTLVNEY 434


>gi|423558664|ref|ZP_17534966.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus MC67]
 gi|401191932|gb|EJQ98954.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus MC67]
          Length = 509

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 203/397 (51%), Gaps = 29/397 (7%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y +T+GC  N+ D+E MAG  +  GY  T ++EEAD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYTRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL ++  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+M+  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424

Query: 408 RELTSVFEAFT-----PYLGMEGRVERIWITEIAADG 439
           + L ++   +       Y+G         I E+  DG
Sbjct: 425 QRLNTLVNEYAVNKNKRYIGQ--------IVEVLVDG 453


>gi|423598916|ref|ZP_17574916.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD078]
 gi|401237186|gb|EJR43643.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD078]
          Length = 509

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 195/370 (52%), Gaps = 16/370 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +  GY  T ++EEAD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
             HL ++  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DNHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+M+  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424

Query: 408 RELTSVFEAF 417
           + L ++   +
Sbjct: 425 QRLNTLVNEY 434


>gi|423457441|ref|ZP_17434238.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG5X2-1]
 gi|401147825|gb|EJQ55318.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
           BAG5X2-1]
          Length = 450

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 18/363 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE  K  +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ +VL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIKVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 REL 410
             L
Sbjct: 357 HRL 359


>gi|229012956|ref|ZP_04170121.1| hypothetical protein bmyco0001_33940 [Bacillus mycoides DSM 2048]
 gi|423661388|ref|ZP_17636557.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VDM022]
 gi|228748210|gb|EEL98070.1| hypothetical protein bmyco0001_33940 [Bacillus mycoides DSM 2048]
 gi|401301429|gb|EJS07018.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VDM022]
          Length = 509

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 195/370 (52%), Gaps = 16/370 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +  GY  T ++EEAD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
             HL ++  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DNHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+M+  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424

Query: 408 RELTSVFEAF 417
           + L ++   +
Sbjct: 425 QRLNTLVNEY 434


>gi|423511805|ref|ZP_17488336.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus HuA2-1]
 gi|402450066|gb|EJV81900.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus HuA2-1]
          Length = 509

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 195/370 (52%), Gaps = 16/370 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +  GY  T ++EEAD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
             HL ++  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DNHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+M+  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424

Query: 408 RELTSVFEAF 417
           + L ++   +
Sbjct: 425 QRLNTLVNEY 434


>gi|429759405|ref|ZP_19291904.1| tRNA methylthiotransferase YqeV [Veillonella atypica KON]
 gi|429179681|gb|EKY20920.1| tRNA methylthiotransferase YqeV [Veillonella atypica KON]
          Length = 435

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 183/367 (49%), Gaps = 13/367 (3%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T+   T GC  NQ D++ M G      Y   D   +ADI++INTC+V +  +     LI
Sbjct: 6   KTVAFTTLGCRVNQYDTDAMKGLFLQHDYEAVDFDSKADIYVINTCSVTNMGEKKSRQLI 65

Query: 119 AKCKSAKKP--LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEE----TLKGHE 170
            K K   +   ++V GC  Q   D +  ++GV++V G     ++VE+VE+      + + 
Sbjct: 66  RKAKRQNQDAYVIVTGCYAQLDPDAIAAIDGVNLVIGTNNRSKIVELVEQLETTERQINA 125

Query: 171 VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           VR ++       + L     +K    + I  GC   C +C   + RG L S  V  +V  
Sbjct: 126 VRDIMKESNFEEMPLFGNESDKSRAFMKIQEGCNNYCAFCIIPYTRGKLKSRKVADIVNE 185

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
            + ++  G  E+ L+    G YG ++    P L + + A L       +R G      + 
Sbjct: 186 AKRLVEHGFHEIVLTGIHLGNYGVELP-GRPTLADVVKALLEIPNLHRIRFGSIESVEVS 244

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           + L E+    +  C +  LH+P+Q+GSD VL+ M R YTL +++ ++  L   +P + I 
Sbjct: 245 DELIELMATDKRVCPH--LHLPLQAGSDHVLTLMKRHYTLQEYKDLIKNLRNRIPDLSIT 302

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 408
           TDII GFP ETDEDF++T+N +KE  F  +H   +  R GTPAA M  +VP AV K R  
Sbjct: 303 TDIIAGFPQETDEDFDETMNTVKEIGFTHIHAFPYSIREGTPAATMPNQVPEAVKKARVA 362

Query: 409 ELTSVFE 415
            L  + E
Sbjct: 363 LLNDLSE 369


>gi|312135098|ref|YP_004002436.1| RNA modification enzyme, miab family [Caldicellulosiruptor
           owensensis OL]
 gi|311775149|gb|ADQ04636.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
           owensensis OL]
          Length = 434

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 198/369 (53%), Gaps = 26/369 (7%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I   T GC  NQ +++ +A      G+ + D   +AD+++INTCTV + S       I K
Sbjct: 3   IAFYTLGCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNMSDRKSRQAIKK 62

Query: 121 CK--SAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
            K  S +  +VV GC PQ    +++++  + I+ G +   ++V+ V+E L+       ++
Sbjct: 63  AKKLSPESIVVVMGCYPQVYPHEVEKIRDIDIIIGTKDRQKIVDYVKEYLE-------NK 115

Query: 177 KKLPALD-------LPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVES 225
           KK+ A+D         +++ ++F E     + I  GC   C+YC   +ARG + S ++ES
Sbjct: 116 KKIVAIDEGYKRGTFEELKISEFNERSRAFIKIEEGCDQFCSYCIIPYARGAVRSRSLES 175

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
           +   VR ++++G KE  ++  +  AYG+D+   +  L++ I      +G   +R+    P
Sbjct: 176 IEEEVRRLVSNGYKEFVITGINISAYGKDLDGKIT-LIDVIERINEIEGVKRIRLSSLEP 234

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             + E    I+ +L    +   LH+ +QSGSD +L  MNR YT + ++ +VD + E    
Sbjct: 235 LIMSEQF--ISRLLSFDKLCHHLHLSLQSGSDKILKFMNRHYTTAQYQDIVDRIKEKWDD 292

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
           +   TDII GFPGET+EDFN T+  +++  F ++H+ +F P+ GT A  M  +V S   +
Sbjct: 293 VAFTTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKGTKAYDMPNQVDSKEKE 352

Query: 405 KRSRELTSV 413
           +RS+ +  V
Sbjct: 353 RRSKVMKEV 361


>gi|417656560|ref|ZP_12306243.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU028]
 gi|329736221|gb|EGG72493.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU028]
          Length = 514

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 189/365 (51%), Gaps = 16/365 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L+A GY+ T +  EAD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V +V G   I  + E++EE    K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G +E+ L  ++  +YG+DI   L   L  ++ ++       +R   ++P  
Sbjct: 249 DEVRELAREGYQEITLLDQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  + +   +   +H+PVQSG++ VL  M R+YT   +  +V  + E +P + 
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEAIPNVA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T++L  + +F   +   +  R GTPAA+MK  VP  V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVPLEVKKER 425

Query: 407 SRELT 411
            + L 
Sbjct: 426 LQRLN 430


>gi|302871917|ref|YP_003840553.1| MiaB family RNA modification protein [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574776|gb|ADL42567.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 433

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 194/366 (53%), Gaps = 28/366 (7%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
           T GC  NQ +++ +A      G+ + D   +AD+++INTCTV + S       I K K  
Sbjct: 7   TLGCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNMSDRKSRQAIKKAKKL 66

Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
           S +  +VV GC PQ    +++++  + I+ G +   ++V+ V+E L        ++KK+ 
Sbjct: 67  SPESIVVVMGCYPQVYPHEVEKIRDIDIIIGTKDRQKIVDYVKEYLD-------NKKKIV 119

Query: 181 ALDLPKVRRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
           A+D    +R  F E+            + I  GC   C+YC   +ARG + S ++ES+  
Sbjct: 120 AID-EGYKRESFEELKISEFNERSRAFIKIEEGCDQFCSYCIIPYARGAVRSRSLESIEE 178

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR ++++G KE  ++  +  AYG+D+   +  L++ I      +G   +R+    P  +
Sbjct: 179 EVRRLVSNGYKEFVITGINISAYGKDLDGKIT-LIDVIERINEIEGVKRIRLSSLEPLIM 237

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            E    I+ +L    +   LH+ +QSGSD +L  MNR YT + ++ +V+ + E    +  
Sbjct: 238 SEQF--ISRLLSFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQGIVERIKEKWDDVAF 295

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
            TDII GFPGET+EDFN TV  ++E  F ++H+ +F P+ GT A  M  ++ S   ++RS
Sbjct: 296 TTDIIVGFPGETEEDFNDTVKFVQEIGFSRIHVFRFSPKKGTKAYDMPNQIDSKEKERRS 355

Query: 408 RELTSV 413
           + +  V
Sbjct: 356 KVMKEV 361


>gi|242373585|ref|ZP_04819159.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348948|gb|EES40550.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
           M23864:W1]
          Length = 514

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/365 (31%), Positives = 188/365 (51%), Gaps = 16/365 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L A GY+ T +  +AD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILKALGYSATSDINQADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V ++ G   I  + E++EE    K
Sbjct: 129 NLKHLKKERPECLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G +E+ L  ++  +YG+DI   L   L  ++ ++       +R   ++P  
Sbjct: 249 NEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  +     +   +H+PVQSG++AVL  M R+YT   +  +V  +   +P + 
Sbjct: 308 FTDRMIEV--IANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVSRIKNAIPDIA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T++L  E +F   +   +  R GTPAA+MK  VP+ V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKER 425

Query: 407 SRELT 411
            + L 
Sbjct: 426 LQRLN 430


>gi|428316469|ref|YP_007114351.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oscillatoria
           nigro-viridis PCC 7112]
 gi|428240149|gb|AFZ05935.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oscillatoria
           nigro-viridis PCC 7112]
          Length = 466

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 191/361 (52%), Gaps = 24/361 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  +++  EA + L NTCT++  ++  + + + + 
Sbjct: 29  HITTFGCQMNKADSERMAGILENMGFEFSEDPNEASLILYNTCTIRDNAEQRVYSNLGRQ 88

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K+      LVVAGCV Q  G   L+ +  + +V G Q  +R+ +++E+  +G++V  
Sbjct: 89  AHRKRQEPGLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLEDLLEQVFEGNQVVA 148

Query: 174 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
               ++   D+ K RR+ K    + +  GC   CTYC   + RG   S   E++   +  
Sbjct: 149 TEAVEIME-DITKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRMPEAIRAEMED 207

Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
           +   G KEV L  ++  AYGRD+      G +   L + +  V ++P  G   LR   ++
Sbjct: 208 LGRQGYKEVTLLGQNIDAYGRDLPGTKPDGSHQHTLTDLLYFVQDVP--GVDRLRFATSH 265

Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           P +  E L K  AE+   P V    H+P QSG + +L AM+R YT   +R ++DT+   +
Sbjct: 266 PRYFTERLIKACAEL---PQVCEHFHIPFQSGDNDILKAMSRGYTQEKYRRIIDTIRRYM 322

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
           P   I  D I GFPGET+  F +T+ LI++  F  V+ + + PRPGTPAA  +   S  V
Sbjct: 323 PDASITADAIVGFPGETEAQFEKTLKLIEDVGFDLVNTAAYSPRPGTPAALWENQLSEEV 382

Query: 404 K 404
           K
Sbjct: 383 K 383


>gi|423669348|ref|ZP_17644377.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VDM034]
 gi|423674524|ref|ZP_17649463.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VDM062]
 gi|401298475|gb|EJS04075.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VDM034]
 gi|401310075|gb|EJS15408.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VDM062]
          Length = 509

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/370 (30%), Positives = 196/370 (52%), Gaps = 16/370 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +  GY  T ++EEAD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G +E+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYREITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL ++  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+M+  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424

Query: 408 RELTSVFEAF 417
           + L ++   +
Sbjct: 425 QRLNTLVNEY 434


>gi|229134580|ref|ZP_04263390.1| hypothetical protein bcere0014_34890 [Bacillus cereus BDRD-ST196]
 gi|229168512|ref|ZP_04296235.1| hypothetical protein bcere0007_34690 [Bacillus cereus AH621]
 gi|423518409|ref|ZP_17494890.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus HuA2-4]
 gi|423592285|ref|ZP_17568316.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD048]
 gi|228614918|gb|EEK72020.1| hypothetical protein bcere0007_34690 [Bacillus cereus AH621]
 gi|228648841|gb|EEL04866.1| hypothetical protein bcere0014_34890 [Bacillus cereus BDRD-ST196]
 gi|401161136|gb|EJQ68504.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus HuA2-4]
 gi|401230527|gb|EJR37034.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD048]
          Length = 509

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/370 (30%), Positives = 196/370 (52%), Gaps = 16/370 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +  GY  T ++EEAD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G +E+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYREITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL ++  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+M+  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424

Query: 408 RELTSVFEAF 417
           + L ++   +
Sbjct: 425 QRLNTLVNEY 434


>gi|255659203|ref|ZP_05404612.1| tRNA-I(6)A37 modification enzyme MiaB [Mitsuokella multacida DSM
           20544]
 gi|260848655|gb|EEX68662.1| tRNA-I(6)A37 modification enzyme MiaB [Mitsuokella multacida DSM
           20544]
          Length = 430

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 130/399 (32%), Positives = 204/399 (51%), Gaps = 31/399 (7%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           + + T GC  NQ ++E M G     GY +      AD+++INTC+V S        +I +
Sbjct: 3   VALTTLGCKVNQFETETMEGLFKQRGYEVVPFEARADVYVINTCSVTSLGDRKSRQIIRR 62

Query: 121 CKSAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLK-----GHEV 171
                   +VA  GC  Q + D +K +EGV +V G ++   +V+ VE+ ++     G   
Sbjct: 63  AHRENPQAIVAVCGCYAQVAPDEIKAIEGVRVVLGTKERAHIVDYVEKAMQEDGIQGTIT 122

Query: 172 RLLHRK---KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
            ++  K    +P  D P+  R      L I  GC   C+YC   +ARG + S   E +  
Sbjct: 123 DIMKAKTFEDIPLYDSPERTRA----FLKIEDGCQNFCSYCIIPYARGPVKSRLPEHVHR 178

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
               ++A G KE+ L+    GAYGRD+  ++  L +A    L   G   LR+G       
Sbjct: 179 EAEKLVAMGFKEIVLTGIHLGAYGRDLPGDIT-LADACREVLSVPGLKRLRLGSLES--- 234

Query: 289 LEHLKEIAEVLRHPCVY-SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           +E   E+  ++R    + + LH+P+Q+GSD VL  MNR Y   +F  +++ + E VPG+ 
Sbjct: 235 IELSPELFALIREDERFCAHLHLPLQAGSDKVLKDMNRHYDTQEFARLIEHIEEEVPGVA 294

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP-AARMKKVPSAVVKKR 406
           I+TDII GFPGET+EDF Q ++ +++  F ++H+  +  R GTP AAR  +V  AV K+R
Sbjct: 295 ISTDIIVGFPGETEEDFEQGLSFVEKMNFARMHVFPYSRRTGTPAAARKDQVDEAVKKER 354

Query: 407 SRELTSVF-----EAFTPYLGMEGRVERIWITEIAADGI 440
              + ++      E    ++G E RV    + E A DGI
Sbjct: 355 VHRMQALADRKAEEFHRSFIGREMRV----LFETAKDGI 389


>gi|423367759|ref|ZP_17345191.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD142]
 gi|401083412|gb|EJP91670.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD142]
          Length = 510

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 195/370 (52%), Gaps = 16/370 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +  GY  T ++EEAD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
             HL ++  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DNHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+M+  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424

Query: 408 RELTSVFEAF 417
           + L ++   +
Sbjct: 425 QRLNTLVNEY 434


>gi|428200507|ref|YP_007079096.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Pleurocapsa sp. PCC 7327]
 gi|427977939|gb|AFY75539.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Pleurocapsa sp. PCC 7327]
          Length = 451

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/397 (31%), Positives = 202/397 (50%), Gaps = 33/397 (8%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  +++  +AD+ L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEEMGFVRSEDPNQADLILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K       L+VAGCV Q  G + L+ +  + +V G Q  +R+ +++EE   G +V  
Sbjct: 69  AKRKHEQPNLTLIVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLHDLLEEVFAGSQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ K RR   V    +NV  GC   CTYC     RG   S T E++   + 
Sbjct: 129 TEPVHIME-DITKPRRESAVTAW-VNVIYGCNERCTYCVVPSVRGIEQSRTPEAIRAEME 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
            +     KEV L  ++  AYGRD+      G +   L + +  V ++P  G   +R   +
Sbjct: 187 ELARQDYKEVTLLGQNIDAYGRDLPGVTETGRHQHTLTDLLYYVHDVP--GIERIRFATS 244

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           +P +  E L +  + L  P V    H+P QSG + +L AM R YT   +R +++ + E +
Sbjct: 245 HPRYFTERLIKACQEL--PKVCEHFHIPFQSGDNEILKAMKRGYTHQRYRQIIEKIRECM 302

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
           P   I+ D I GFPGET+E F  T+ L+++  F Q++ + + PRPGTPAA  +   S  V
Sbjct: 303 PDASISADAIVGFPGETEEQFENTLQLVEDLGFDQLNTAAYSPRPGTPAAIWENQVSEEV 362

Query: 404 K----KRSREL--TSVFEAFTPYLGMEGRVERIWITE 434
           K    +R   L  T   E    YL   GR+E + + +
Sbjct: 363 KSDRLQRLNHLVATKAAERTQRYL---GRIEEVLVED 396


>gi|398781992|ref|ZP_10545860.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           auratus AGR0001]
 gi|396997054|gb|EJJ08029.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           auratus AGR0001]
          Length = 495

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/368 (32%), Positives = 190/368 (51%), Gaps = 15/368 (4%)

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++T+GC  N  DSE ++G L   GY     + E AD+ + NTC V+  + + +   + + 
Sbjct: 9   IRTYGCQMNVHDSERLSGLLEEAGYVPAPKDGEGADVVVFNTCAVRENADNRLYGNLGQL 68

Query: 122 --KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
             K A +P   + V GC+ Q  RD  +K+   V +V G   I ++  ++E      E ++
Sbjct: 69  APKKAARPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARIQEEAQV 128

Query: 174 LHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
              + L A    LP  R + +   + I+VGC   CT+C     RG         ++  V 
Sbjct: 129 EIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEVE 188

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
            ++A+GV E+ L  ++  AYG DIG +       + A    +G   +R    +P    + 
Sbjct: 189 ALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGTIEGLERVRFTSPHPRDFTDD 247

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           +  IA +   P V   LH+P+QSGSD VL AM R Y    F  +++ +   +P   I+TD
Sbjct: 248 V--IAAMAETPNVMPQLHMPLQSGSDRVLKAMRRSYRQERFLGILEKVRAAMPDAAISTD 305

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL 410
           II GFPGET+EDF QT++ ++E +F Q    Q+  RPGTPAA M+ ++P AVV++R   L
Sbjct: 306 IIVGFPGETEEDFAQTLHTVRESRFAQAFTFQYSKRPGTPAADMEGQIPKAVVQERYERL 365

Query: 411 TSVFEAFT 418
            ++ E  +
Sbjct: 366 VALQEEIS 373


>gi|418325516|ref|ZP_12936722.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU071]
 gi|365228118|gb|EHM69303.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU071]
          Length = 514

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 189/365 (51%), Gaps = 16/365 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L+A GY+ T +  EAD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V +V G   I  + E++EE    K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G +E+ L  ++  +YG+DI   L   L  ++ ++       +R   ++P  
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  + +   +   +H+PVQSG++ VL  M R+YT   +  +V  + E +P + 
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEAIPNVA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T++L  + +F   +   +  R GTPAA+MK  VP  V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVPLEVKKER 425

Query: 407 SRELT 411
            + L 
Sbjct: 426 LQRLN 430


>gi|224541752|ref|ZP_03682291.1| hypothetical protein CATMIT_00924 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525356|gb|EEF94461.1| tRNA methylthiotransferase YqeV [Catenibacterium mitsuokai DSM
           15897]
          Length = 435

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/361 (33%), Positives = 181/361 (50%), Gaps = 14/361 (3%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  +SE M       GY   D    AD+++INTCTV +   S    +I 
Sbjct: 3   TVAFHTLGCKVNSYESEAMLEIFKKRGYETIDFESPADVYVINTCTVTNTGDSKSRQMIR 62

Query: 120 KCKSAKKPLV--VAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRL 173
           K        V  V GC  Q  S ++  +EGVS+V G Q    +V+ VEE    H+  V++
Sbjct: 63  KAHRTNPEAVICVVGCYSQVASEEITGIEGVSVVLGTQHRASIVDFVEEYKSTHKQIVKI 122

Query: 174 LHRKKLPALDLPKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
            +  K+   +   +    NK    L I  GC   CTYC   +ARG + S   E ++ + +
Sbjct: 123 ENVMKVSRFEDLSIHAFENKTRAFLKIQDGCNNFCTYCIIPYARGGVRSRPKEDVLRQAQ 182

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
            ++  G  E+ L+   T  YG D+   +   LL  +  ++   G   LRI       + +
Sbjct: 183 ELVDRGFVEIVLTGIHTAGYGVDLENYSFYDLLVDLTTKIK--GLKRLRISSIEMSQVSD 240

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
            + E+  + + P +   LH+P+QSG+D++L  M R Y  ++F      L E +PG+ I T
Sbjct: 241 EIIEL--IGKSPIIVDHLHIPIQSGTDSILRRMARHYNTAEFEKKYFELKEALPGISITT 298

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 409
           D+I GFPGET+EDF  T N IK+  F Q+H+  +  R GTPA RM  +VP  V K+R R 
Sbjct: 299 DVIVGFPGETEEDFVDTYNWIKKLHFNQLHVFPYSRRRGTPADRMPSQVPGDVKKERVRR 358

Query: 410 L 410
           L
Sbjct: 359 L 359


>gi|423488895|ref|ZP_17465577.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BtB2-4]
 gi|423494620|ref|ZP_17471264.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus CER057]
 gi|423498589|ref|ZP_17475206.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus CER074]
 gi|401151681|gb|EJQ59127.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus CER057]
 gi|401159247|gb|EJQ66632.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus CER074]
 gi|402433250|gb|EJV65304.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus BtB2-4]
          Length = 509

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 195/370 (52%), Gaps = 16/370 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +  GY  T ++EEAD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
             HL ++  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DNHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+M+  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424

Query: 408 RELTSVFEAF 417
           + L ++   +
Sbjct: 425 QRLNTLVNEY 434


>gi|27467889|ref|NP_764526.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866805|ref|YP_188442.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           epidermidis RP62A]
 gi|251810724|ref|ZP_04825197.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876275|ref|ZP_06285142.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis SK135]
 gi|293366743|ref|ZP_06613419.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|417646301|ref|ZP_12296162.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU144]
 gi|417658991|ref|ZP_12308604.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU045]
 gi|417909904|ref|ZP_12553637.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU037]
 gi|417910848|ref|ZP_12554564.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU105]
 gi|417913346|ref|ZP_12557013.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU109]
 gi|418605439|ref|ZP_13168764.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU041]
 gi|418607743|ref|ZP_13170966.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU057]
 gi|418609881|ref|ZP_13173015.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU065]
 gi|418612172|ref|ZP_13175218.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU117]
 gi|418616672|ref|ZP_13179596.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU120]
 gi|418622040|ref|ZP_13184796.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU123]
 gi|418624502|ref|ZP_13187177.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU125]
 gi|418626753|ref|ZP_13189349.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU126]
 gi|418628490|ref|ZP_13191035.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU127]
 gi|418664683|ref|ZP_13226149.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU081]
 gi|419768123|ref|ZP_14294260.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus IS-250]
 gi|419770912|ref|ZP_14296974.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus IS-K]
 gi|420163370|ref|ZP_14670117.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM095]
 gi|420165173|ref|ZP_14671877.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM088]
 gi|420167650|ref|ZP_14674302.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM087]
 gi|420172708|ref|ZP_14679206.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM067]
 gi|420182962|ref|ZP_14689095.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM049]
 gi|420193970|ref|ZP_14699799.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM021]
 gi|420197182|ref|ZP_14702906.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM020]
 gi|420201994|ref|ZP_14707589.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM018]
 gi|420214227|ref|ZP_14719506.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIH05005]
 gi|420216059|ref|ZP_14721281.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIH05001]
 gi|420218841|ref|ZP_14723891.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIH04008]
 gi|420221916|ref|ZP_14726841.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIH08001]
 gi|420224778|ref|ZP_14729616.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIH06004]
 gi|420227083|ref|ZP_14731856.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIH05003]
 gi|420229406|ref|ZP_14734112.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIH04003]
 gi|420231764|ref|ZP_14736409.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIH051668]
 gi|420234452|ref|ZP_14739015.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIH051475]
 gi|421607205|ref|ZP_16048451.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           epidermidis AU12-03]
 gi|81674874|sp|Q5HPP8.1|MIAB_STAEQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81843816|sp|Q8CSS3.1|MIAB_STAES RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|27315434|gb|AAO04568.1|AE016747_65 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57637463|gb|AAW54251.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
           RP62A]
 gi|251805884|gb|EES58541.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295300|gb|EFA87827.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis SK135]
 gi|291319044|gb|EFE59414.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329728030|gb|EGG64474.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU144]
 gi|329736630|gb|EGG72896.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU045]
 gi|341652513|gb|EGS76301.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU037]
 gi|341655036|gb|EGS78772.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU105]
 gi|341655628|gb|EGS79352.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU109]
 gi|374402536|gb|EHQ73561.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU041]
 gi|374403860|gb|EHQ74855.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU057]
 gi|374406217|gb|EHQ77120.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU065]
 gi|374410129|gb|EHQ80890.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU081]
 gi|374820054|gb|EHR84168.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU117]
 gi|374820750|gb|EHR84826.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU120]
 gi|374827415|gb|EHR91277.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU123]
 gi|374827731|gb|EHR91592.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU125]
 gi|374831297|gb|EHR95039.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU126]
 gi|374837336|gb|EHS00902.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU127]
 gi|383361044|gb|EID38427.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus IS-250]
 gi|383362461|gb|EID39813.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
           subsp. aureus IS-K]
 gi|394235059|gb|EJD80633.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM095]
 gi|394236340|gb|EJD81874.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM088]
 gi|394237678|gb|EJD83164.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM087]
 gi|394241385|gb|EJD86799.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM067]
 gi|394249425|gb|EJD94638.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM049]
 gi|394265989|gb|EJE10635.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM020]
 gi|394266668|gb|EJE11293.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM021]
 gi|394269967|gb|EJE14490.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM018]
 gi|394283592|gb|EJE27757.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIH05005]
 gi|394289947|gb|EJE33817.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIH08001]
 gi|394291586|gb|EJE35384.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIH04008]
 gi|394292509|gb|EJE36251.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIH05001]
 gi|394294181|gb|EJE37867.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIH06004]
 gi|394297584|gb|EJE41181.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIH05003]
 gi|394299172|gb|EJE42723.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIH04003]
 gi|394302306|gb|EJE45754.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIH051668]
 gi|394304255|gb|EJE47662.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIH051475]
 gi|406656997|gb|EKC83390.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           epidermidis AU12-03]
          Length = 514

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 189/365 (51%), Gaps = 16/365 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L+A GY+ T +  EAD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V +V G   I  + E++EE    K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G +E+ L  ++  +YG+DI   L   L  ++ ++       +R   ++P  
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  + +   +   +H+PVQSG++ VL  M R+YT   +  +V  + E +P + 
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEAIPNVA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T++L  + +F   +   +  R GTPAA+MK  VP  V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVPLEVKKER 425

Query: 407 SRELT 411
            + L 
Sbjct: 426 LQRLN 430


>gi|429191122|ref|YP_007176800.1| MiaB-like tRNA modifying enzyme [Natronobacterium gregoryi SP2]
 gi|448326688|ref|ZP_21516035.1| MiaB-like tRNA modifying protein [Natronobacterium gregoryi SP2]
 gi|429135340|gb|AFZ72351.1| MiaB-like tRNA modifying enzyme [Natronobacterium gregoryi SP2]
 gi|445610493|gb|ELY64264.1| MiaB-like tRNA modifying protein [Natronobacterium gregoryi SP2]
          Length = 417

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/357 (33%), Positives = 189/357 (52%), Gaps = 23/357 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC+ N+ +S  +  +L   G+   D++E AD+ ++NTCTV   ++  M     + 
Sbjct: 5   HIETYGCTSNRGESREIERRLRDAGHHRVDSAEAADVAILNTCTVVEKTERNMLRRAEEL 64

Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVG-VQQIDRVVEVVEETLKGHEVRLLHRKK 178
                 L + GC+   QG    KE     + G V   D V + V       E        
Sbjct: 65  ADETAALYITGCMALAQG----KEFAEADVDGEVLHWDEVPQAV----TNGECPTTTPDA 116

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
            P LD         + ILPI  GC+  C+YC TKHA G + S +++  V + R +I  G 
Sbjct: 117 EPVLD-------GVIGILPIARGCMSDCSYCITKHATGKIDSPSIDKNVAKARALIHAGA 169

Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
           KE+ ++ +DTG YG D G   L  LL  I A    DG   +R+GM NP  +     E+A 
Sbjct: 170 KEIRITGQDTGVYGWDDGERKLHELLERICA---IDGEFRVRVGMANPKGVHGIRDELAA 226

Query: 298 VLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
           V   +  +Y FLH PVQSGSD VL  M R++ + ++  VV+   E +    ++TD I GF
Sbjct: 227 VFAGNEKLYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVEVFEEALDYWTLSTDFIVGF 286

Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
           P ET+ D  Q++ L++E +  ++++++F  RPGT AA MK +   V K+RS+E++++
Sbjct: 287 PTETEHDHEQSLALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSAL 343


>gi|420212653|ref|ZP_14718001.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM001]
 gi|394279614|gb|EJE23920.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM001]
          Length = 514

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 189/365 (51%), Gaps = 16/365 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L+A GY+ T +  EAD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V +V G   I  + E++EE    K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G +E+ L  ++  +YG+DI   L   L  ++ ++       +R   ++P  
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  + +   +   +H+PVQSG++ VL  M R+YT   +  +V  + E +P + 
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEAIPNVA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T++L  + +F   +   +  R GTPAA+MK  VP  V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVPLEVKKER 425

Query: 407 SRELT 411
            + L 
Sbjct: 426 LQRLN 430


>gi|239636980|ref|ZP_04677974.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus warneri
           L37603]
 gi|239597330|gb|EEQ79833.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus warneri
           L37603]
          Length = 514

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 186/365 (50%), Gaps = 16/365 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L A GY+ T +   AD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILEALGYSATTDINTADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V ++ G   I R+ E++EE    K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G +E+ L  ++  +YG+DI   L   L  ++ ++       +R   ++P  
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  +     +   +H+PVQSG++AVL  M R+YT   +  +V  + E +P + 
Sbjct: 308 FTDRMIEV--IANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVSRIKEAIPNIA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F  T+ L  E  F   +   +  R GTPAA+MK  VP+ V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEDTLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKER 425

Query: 407 SRELT 411
            + L 
Sbjct: 426 LQRLN 430


>gi|418411712|ref|ZP_12984978.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Staphylococcus epidermidis BVS058A4]
 gi|410891295|gb|EKS39092.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Staphylococcus epidermidis BVS058A4]
          Length = 514

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 189/365 (51%), Gaps = 16/365 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L+A GY+ T +  EAD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V +V G   I  + E++EE    K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G +E+ L  ++  +YG+DI   L   L  ++ ++       +R   ++P  
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  + +   +   +H+PVQSG++ VL  M R+YT   +  +V  + E +P + 
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEAIPNVA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T++L  + +F   +   +  R GTPAA+MK  VP  V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVPLEVKKER 425

Query: 407 SRELT 411
            + L 
Sbjct: 426 LQRLN 430


>gi|406889510|gb|EKD35681.1| hypothetical protein ACD_75C01819G0003 [uncultured bacterium]
          Length = 457

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/386 (31%), Positives = 202/386 (52%), Gaps = 37/386 (9%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y+KTFGC  N+ DSE MA  LS +GY    + +EAD+ ++NTC++++ ++  + +L+  
Sbjct: 6   FYIKTFGCQMNERDSEIMAQSLSRYGYIEGMDMKEADLVILNTCSIRAKAEQKVLSLLGY 65

Query: 121 CKSAK--KP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEE-TLKGHEV 171
            +  K  +P   + VAGCV Q  G R ++ +  V +V G Q I  +  ++E    +G  V
Sbjct: 66  LRKTKLSRPTMKICVAGCVAQQEGVRLIERMPHVDLVIGTQNIYNLGPLLENLDNEGSRV 125

Query: 172 --RLLHRKKLPAL--DLPKVRRN----------KFVEILPINVGCLGACTYCKTKHARGH 217
              L     +P+    LP   R+          ++ + + I  GC   CTYC   + RG 
Sbjct: 126 ITTLWDDYDIPSFLPSLPSNTRSESGAQTTSPFQYSKFVTIMQGCNNYCTYCVVPYTRGR 185

Query: 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNL---PILLNAIVAELPP-D 273
             S  V+ ++  V+ ++  GVKEV L  ++  +YG+   V     P   + ++ ++   D
Sbjct: 186 EISRNVKDILEEVQILVKAGVKEVTLLGQNVNSYGKTNAVTAAGDPYTFSDLLRDVSNVD 245

Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 333
           G   LR   +NP  + + L      ++  C     H+PVQSGSD +L AMNR+YT+  + 
Sbjct: 246 GLARLRFTTSNPKDLTDALMRSFRDVKKLCPQ--FHLPVQSGSDRILKAMNRKYTVGQYL 303

Query: 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393
             V  L E +PG+ + TD+I GFPGE+DEDF  T+NL++E +F      ++  RPGT A+
Sbjct: 304 EKVKKLHEYLPGIALTTDVIVGFPGESDEDFQGTMNLLEEVRFHGSFSFKYSDRPGTRAS 363

Query: 394 RM--------KKVPSAVVKKRSRELT 411
           ++        K    A+ +KR  E++
Sbjct: 364 QLVGKVDEEIKSERLALFQKRQDEIS 389


>gi|41408944|ref|NP_961780.1| hypothetical protein MAP2846c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|81413559|sp|Q73W15.1|MIAB_MYCPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|41397303|gb|AAS05163.1| hypothetical protein MAP_2846c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 517

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/396 (31%), Positives = 198/396 (50%), Gaps = 27/396 (6%)

Query: 44  HLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYA-LTDNSEEADIWLIN 102
           H   T +++  + G  T  ++T+GC  N  DSE +AG L A GY    + +E AD+ + N
Sbjct: 14  HGPVTSTVARDVSGVRTYQVRTYGCQMNVHDSERLAGLLEAAGYRRAAEGAEVADVVVFN 73

Query: 103 TCTVKSPSQSAMDTLIAKCKSAKK-----PLVVAGCVPQGSRD--LKELEGVSIV-GVQQ 154
           TC V+  + + +   ++     K+      + V GC+ Q  R+  L+    V +V G   
Sbjct: 74  TCAVRENADNKLYGNLSHLAPRKRGNPEMQIAVGGCLAQKDREAVLRRAPWVDVVFGTHN 133

Query: 155 IDRVVEVVEETL--KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTK 212
           I  +  ++E     K  +V +    +     LP  R + +   + I+VGC  +CT+C   
Sbjct: 134 IGSLPTLLERARHNKAAQVEIAEALQQFPSSLPSARESAYAAWVSISVGCNNSCTFCIVP 193

Query: 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG---------RDIGVNLPILL 263
             RG     + + ++  VR+++ADGV EV L  ++  AYG         RD G     LL
Sbjct: 194 SLRGKEVDRSPDDILAEVRSLVADGVLEVTLLGQNVNAYGVSFADPALPRDRGA-FARLL 252

Query: 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM 323
            A   E+  DG   +R    +P    + +  I  + + P V   LH+P+QSGSD VL AM
Sbjct: 253 RA-CGEI--DGLERVRFTSPHPAEFTDDV--IEAMAQTPNVCPALHMPLQSGSDRVLRAM 307

Query: 324 NREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383
            R Y    F  ++D +   +P   I TD+I GFPGET+EDF  T+++++  +F      Q
Sbjct: 308 RRSYRAERFLGIIDRVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQ 367

Query: 384 FYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT 418
           +  RPGTPAA +  ++P AVV++R   L  + E+ +
Sbjct: 368 YSKRPGTPAAELDGQIPKAVVQERYERLVELQESIS 403


>gi|218905447|ref|YP_002453281.1| MiaB family RNA modification protein [Bacillus cereus AH820]
 gi|218535522|gb|ACK87920.1| RNA modification enzyme, MiaB family [Bacillus cereus AH820]
          Length = 450

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 192/363 (52%), Gaps = 18/363 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY  T+  ++AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +   ++    + V GC  Q S  ++  + GV IV G Q  ++++  +EE     +    V
Sbjct: 63  RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRXERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG DI   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ +VP  V   R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356

Query: 408 REL 410
             L
Sbjct: 357 HRL 359


>gi|74193201|dbj|BAE20608.1| unnamed protein product [Mus musculus]
          Length = 218

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/156 (53%), Positives = 114/156 (73%), Gaps = 7/156 (4%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K +   K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCL 203
            +KK          LDLPK+R+N  +EI+ IN G +
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGII 214


>gi|294631817|ref|ZP_06710377.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. e14]
 gi|292835150|gb|EFF93499.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. e14]
          Length = 500

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 189/374 (50%), Gaps = 16/374 (4%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQSAMD 115
           T +  ++T+GC  N  DSE +AG L   GY  A   +  +AD+ + NTC V+  + + + 
Sbjct: 56  TRSYEIRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGDADVVVFNTCAVRENADNRLY 115

Query: 116 TLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLK 167
             +     K AK+P   + V GC+ Q  RD  +K+   V +V G   I ++  ++E    
Sbjct: 116 GNLGHLAPKKAKRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARV 175

Query: 168 GHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
             E ++   + L A    LP  R + +   + I+VGC   CT+C     RG         
Sbjct: 176 QEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGD 235

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
           ++  V  ++ +GV E+ L  ++  AYG DIG +       + A    +G   +R    +P
Sbjct: 236 ILAEVEALVGEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGNVEGLERVRFTSPHP 294

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
               + +  IA +   P V   LH+P+QSGSD VL AM R Y    +  +++ +   +P 
Sbjct: 295 RDFTDDV--IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRAAIPH 352

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
             I TDII GFPGET+EDF QT+++++E +F Q    Q+  RPGTPAA M  +VP  VV+
Sbjct: 353 AAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDDQVPKEVVQ 412

Query: 405 KRSRELTSVFEAFT 418
            R   L ++ E  +
Sbjct: 413 ARYERLVALQEEIS 426


>gi|428205367|ref|YP_007089720.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chroococcidiopsis
           thermalis PCC 7203]
 gi|428007288|gb|AFY85851.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chroococcidiopsis
           thermalis PCC 7203]
          Length = 454

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/395 (31%), Positives = 203/395 (51%), Gaps = 29/395 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
           ++ TFGC  N++DSE MAG L   G+  +++  EA + L NTCT++  ++  + + +   
Sbjct: 9   HITTFGCQMNKADSERMAGILEDMGFEWSEDPNEASLLLYNTCTIRDNAEQKVYSYLGRQ 68

Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K + A   +VVAGCV Q  G   L+ +  + +V G Q  +R+ E++E+   G++V  
Sbjct: 69  AKRKQEQADLTIVVAGCVAQQEGETLLRRVPEIDLVMGPQHANRLEELLEQVFDGNQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
               ++   D+ K RR+  V    +NV  GC   CTYC   + RG   S T E++   + 
Sbjct: 129 TEPIQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIKAEMV 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
            +   G KE+ L  ++  AYGRD+      G +L  L + +  V ++P  G   LR   +
Sbjct: 187 ELGKQGYKEITLLGQNIDAYGRDLPGTTPEGRHLHTLTDLLYYVHDVP--GVDRLRFATS 244

Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
           +P +  E L +  AE+   P V    H+P QSG + VL  M+R YT   +R ++D + +L
Sbjct: 245 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNEVLKRMSRGYTHEKYRRIIDKIRQL 301

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
           +P   I+ D I GFPGET+  F  T+ L+ +  F  ++ + + PRPGTPAA      S  
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLVADIGFDHLNTAAYSPRPGTPAALWDAQLSEE 361

Query: 403 VKKRSRELTSVFEAFTPYLGME---GRVERIWITE 434
           VK    +  +   A T     +   GRVE + + +
Sbjct: 362 VKSDRLQRLNHLVATTAQARSQRYLGRVEEVLVED 396


>gi|289449396|ref|YP_003475195.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289183943|gb|ADC90368.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 485

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 188/370 (50%), Gaps = 19/370 (5%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
            +T +++TFGC  N +DSE +AG L   GY    N E ADI LINTC+V+  +       
Sbjct: 28  NKTYFIQTFGCQQNDNDSEKLAGLLQKMGYTPAANRESADIVLINTCSVRENASDRFFGN 87

Query: 118 IAKCKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLK 167
           +   K  KK      +   GC+ +    +++++        ++    + R  E++   L 
Sbjct: 88  LGILKPLKKSNPGMLICTCGCMMKQEEVVEKIKRSYPFVDVLLAPSDLYRFPELLWRRLN 147

Query: 168 G-HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
           G   V  +    + A  +P +   K+  +  I  GC   CTYC     RG   S   E +
Sbjct: 148 GTRRVYDITADDVVAEGIPVLHERKYRALCTIMYGCNNYCTYCIVPFTRGRERSRQPEEI 207

Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG-MTNP 285
           +  ++ + A G  EV L  ++  +YGRD+   +     A +  L  + S + RI  MT+ 
Sbjct: 208 LRELQELAASGYTEVMLLGQNVNSYGRDLADKMSF---AELLALAAEHSGLPRIRYMTSH 264

Query: 286 PFILEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           P  L    E+ +V+  +P +   +H+P+QSGSDAVL  MNR Y ++ + ++VD     +P
Sbjct: 265 PKDLS--PELIDVMAAYPNIERHIHLPLQSGSDAVLRKMNRHYNIARYMSIVDLAKRKIP 322

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVV 403
            + I TDII GFPGET+ DF +T+ ++ E  +      Q+ PRPGTPAA+   +VP+ VV
Sbjct: 323 DLSITTDIIVGFPGETEADFAETLRIVGEVGYDSAFTFQYSPRPGTPAAKWTNQVPAEVV 382

Query: 404 KKRSRELTSV 413
            +R   L ++
Sbjct: 383 SERFDRLVTL 392


>gi|417642888|ref|ZP_12292968.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus warneri
           VCU121]
 gi|445059788|ref|YP_007385192.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           warneri SG1]
 gi|330686356|gb|EGG97959.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU121]
 gi|443425845|gb|AGC90748.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           warneri SG1]
          Length = 514

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 186/365 (50%), Gaps = 16/365 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L A GY+ T +   AD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILEALGYSATTDINTADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V ++ G   I R+ E++EE    K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G +E+ L  ++  +YG+DI   L   L  ++ ++       +R   ++P  
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  +     +   +H+PVQSG++AVL  M R+YT   +  +V  + E +P + 
Sbjct: 308 FTDRMIEV--IANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVSRIKEAIPNIA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F  T+ L  E  F   +   +  R GTPAA+MK  VP+ V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEDTLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVPTDVKKER 425

Query: 407 SRELT 411
            + L 
Sbjct: 426 LQRLN 430


>gi|121534805|ref|ZP_01666625.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
           Nor1]
 gi|121306600|gb|EAX47522.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
           Nor1]
          Length = 432

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 194/394 (49%), Gaps = 29/394 (7%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  NQ ++E + G     GY +    E AD+++INTC+V    +     LI +    
Sbjct: 8   TLGCKVNQFETEVIEGLFKQRGYTIVSFDEPADVYVINTCSVTHLGEKKSRQLIRRAARV 67

Query: 125 --KKPLVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGH-EVRLL----- 174
             +  +V  GC  Q S D +  + GV  IVG Q   R+V++VEE  +   +V  +     
Sbjct: 68  NPEAVIVATGCYAQVSPDKVAAIPGVDVIVGTQDRGRIVDLVEEARRTRGQVNAVTDIME 127

Query: 175 --HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
               + +P  D P   R      L I  GC   CTYC   +ARG L S +++S+      
Sbjct: 128 AEQFEDIPIFDAPGRTR----AFLKIQEGCTNFCTYCIIPYARGPLRSRSLDSVKREAEK 183

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
           +IA G KE+ L+    GAYGRD+G  L  L +A+   L   G   LR+       + + L
Sbjct: 184 LIATGFKEIVLTGIHLGAYGRDMGDGLE-LADAVETVLSVAGLVRLRLSSLESVEVSDRL 242

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
             +A + R   +   LH+P+Q+G D VLS MNR YT  ++  +V  +   VP + + TD+
Sbjct: 243 --VALMRRDAKLCPHLHLPLQAGDDHVLSQMNRHYTTEEYSRLVGDIRRRVPDLAVTTDV 300

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 411
           I GFPGET   F  ++  ++   F +VHI  +  R GTPAA    +VP    K+R RE+ 
Sbjct: 301 IVGFPGETPTMFANSLAFVERMAFAKVHIFPYSRRSGTPAATYPNQVPEEEKKRRVREMQ 360

Query: 412 SVFE----AF-TPYLGMEGRVERIWITEIAADGI 440
            V E    AF   ++G E  V    + E A DG+
Sbjct: 361 RVAEKGAAAFLAAFVGREMEV----LFETANDGV 390


>gi|373454824|ref|ZP_09546687.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister succinatiphilus
           YIT 11850]
 gi|371935520|gb|EHO63266.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister succinatiphilus
           YIT 11850]
          Length = 447

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/389 (31%), Positives = 199/389 (51%), Gaps = 24/389 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           Y  T+GC  N++D+E + GQL   GY   +N E+ADI ++NTC+V+  ++  +   I + 
Sbjct: 13  YTITYGCQMNENDTERINGQLEDLGYKPAENMEDADIVIMNTCSVRQNAEEKVYGKIGEI 72

Query: 122 KSAKKP-----LVVAGCVPQGSRDLKELEGVSIV----GVQQIDRVVEVV-EETLKGHEV 171
           K  K       L +AGC+ Q ++  K +E + I+    G   I  + +++  E  +G  +
Sbjct: 73  KKLKDKNPRMLLGIAGCMAQENKG-KLIERMPIIDFVIGPYHIHDLKDIISRENARGGHI 131

Query: 172 RLLHRKKLPALD---LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
               R      D   L  VR+++    +PI  GC   CTYC   + RG   S T++ +  
Sbjct: 132 VKTERNPHSVRDYSELRSVRKSRVFAWIPIMQGCNKFCTYCIVPYVRGREISRTIDDICR 191

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
            ++ +   G KE+ L  ++  +YG D   G N   L+ AI      DG   +R   ++P 
Sbjct: 192 EIKGLAETGYKEITLLGQNVNSYGLDFRNGTNFGDLIRAIDK---IDGIERVRYMTSHPR 248

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
            +   +  I  +   P V   +H+PVQ GS+ +L  MNR YT+  F+ +V+ + + +P +
Sbjct: 249 DMTFDM--IDAMAASPKVVRHMHLPVQHGSNEMLKQMNRGYTIEHFKELVNYVRQKMPDV 306

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
            + TD+I GFPGET+E   +T+ L+KE +F   +   + PR GTPAARM+ ++      +
Sbjct: 307 ALTTDLITGFPGETEEMHQETIKLLKEVRFDSAYTFIYSPRTGTPAARMENQIDDETKHR 366

Query: 406 RSRELTSVFEAFTPYL--GMEGRVERIWI 432
           R +EL       +  L  GMEG+   I I
Sbjct: 367 RLQELMDTQNEISLELNRGMEGKNYEIII 395


>gi|392354291|ref|XP_003751729.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
           [Rattus norvegicus]
          Length = 212

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/154 (54%), Positives = 112/154 (72%), Gaps = 7/154 (4%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++   
Sbjct: 59  IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118

Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
              I K     K +V+AGCVPQ       L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178

Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVG 201
            +KK          LDLPK+R+N  +EI+ IN G
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTG 212


>gi|416124308|ref|ZP_11595304.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis FRI909]
 gi|420176865|ref|ZP_14683259.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM057]
 gi|420179459|ref|ZP_14685750.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM053]
 gi|319401418|gb|EFV89628.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis FRI909]
 gi|394251772|gb|EJD96848.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM057]
 gi|394253663|gb|EJD98659.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM053]
          Length = 517

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 188/365 (51%), Gaps = 16/365 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L+A GY+ T +  EAD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V +V G   I  + E++EE    K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G +E+ L  ++  +YG+DI   L   L  ++ ++       +R   ++P  
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  + +   +   +H+PVQSG++ VL  M R+YT   +  +V  + E +P + 
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEAIPNVA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T+ L  + +F   +   +  R GTPAA+MK  VP  V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLTLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVPLEVKKER 425

Query: 407 SRELT 411
            + L 
Sbjct: 426 LQRLN 430


>gi|401565221|ref|ZP_10806071.1| MiaB-like protein [Selenomonas sp. FOBRC6]
 gi|400188062|gb|EJO22241.1| MiaB-like protein [Selenomonas sp. FOBRC6]
          Length = 430

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 186/366 (50%), Gaps = 27/366 (7%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  NQ ++E M G   A GY +    E A++++INTC+V   S      LI +    
Sbjct: 7   TLGCKVNQFETETMEGLFRARGYEVVPFEERAEVYVINTCSVTHLSDRKSRQLIRRAART 66

Query: 125 KKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH----------- 169
                + V GC  Q    +++ LEGV +V G +   R+V+ VEE L+             
Sbjct: 67  NPSACIAVTGCYAQVAPEEIRALEGVRVVIGTKARARIVDYVEEALRADTGATGTITDIM 126

Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           + R+   + +P   LP   R      L I  GC   CT+C   +ARG + S  + ++   
Sbjct: 127 QARVF--EDIPLHSLPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSRELSAVARE 180

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           ++ +   G  EV L+    GAYG D+    P L +A    L       LR+G       +
Sbjct: 181 MKLLTEAGFYEVVLTGIHLGAYGIDLAAR-PTLADACRTALAEKSLRRLRLGSLES---V 236

Query: 290 EHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           E   ++ E++R  P   + LH+P+Q+GSD VL AMNR Y  + F  +++ +   VPG+ I
Sbjct: 237 ELSADLLELMRTEPRFAAHLHLPLQAGSDNVLRAMNRHYDTAAFAHLLEEVRAAVPGVAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
           +TDII GFPGET+EDF   ++ +++  F ++H+  +  R GTPAAR   +VP  V K+R+
Sbjct: 297 STDIIVGFPGETEEDFAVGLDFVRQMGFARMHVFPYSARKGTPAARRSDQVPPTVRKERA 356

Query: 408 RELTSV 413
             + ++
Sbjct: 357 ARMQAL 362


>gi|359458947|ref|ZP_09247510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acaryochloris
           sp. CCMEE 5410]
          Length = 454

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/361 (33%), Positives = 192/361 (53%), Gaps = 24/361 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI--- 118
           ++ T+GC  N++DSE MAG L   GY  ++N ++A++ L NTCT++  ++  + + +   
Sbjct: 9   HITTYGCQMNKADSERMAGVLENMGYQWSENPDDANLILCNTCTIRDNAEHKVYSYLGRQ 68

Query: 119 AKCKSAKK--PLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
           AK K A+    LVVAGCV Q   D  L+ +  + +V G Q  +R+ +++E+   G +V L
Sbjct: 69  AKRKHAQPDLTLVVAGCVAQQEGDALLRRVPELDLVMGPQHANRLQDLLEQVASGQQV-L 127

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                    D+ K RR+  V    +NV  GC   CTYC   + RG   S T E++   + 
Sbjct: 128 ATEPIHIVEDITKPRRDSAVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMV 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
            +   G KEV L  ++  AYGRD+      G +L  L + +  V ++P  G   +R   +
Sbjct: 187 QLGEQGFKEVTLLGQNIDAYGRDLPGTTSEGRHLHTLTDLLYFVHDVP--GIERIRFATS 244

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           +P +  E L  I      P V    H+P QSG + VL AM+R YT   +R ++D +  ++
Sbjct: 245 HPRYFTERL--IQACYELPKVCEHFHIPFQSGDNDVLKAMSRGYTHEKYRRIIDNIRAIM 302

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
           P   I+ D I GFPGET+  F  T+ L+++ +F  ++ + + PRPGTPAA      S  V
Sbjct: 303 PDASISADAIVGFPGETEAQFMNTMQLVEDIEFDLLNTAAYSPRPGTPAALWDNQLSEAV 362

Query: 404 K 404
           K
Sbjct: 363 K 363


>gi|220932005|ref|YP_002508913.1| MiaB family RNA modification protein [Halothermothrix orenii H 168]
 gi|219993315|gb|ACL69918.1| RNA modification enzyme, MiaB family [Halothermothrix orenii H 168]
          Length = 450

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 185/358 (51%), Gaps = 19/358 (5%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ T+GC  N  DSE +AG L   GY  T+N EEADI ++NTC V+  ++  +   +   
Sbjct: 7   FILTYGCQMNVHDSEKLAGMLEEMGYKSTNNLEEADIIMVNTCAVRENAELRVFGRVGDF 66

Query: 122 KSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVE--ETLKGH 169
           K  K+      + V GC+ Q   + ++L         I G   I  + E+++  +  +G 
Sbjct: 67  KRLKEKNPDLIIGVGGCMMQIDENARKLYEKYPHVDLIFGTHNIHHIPELIKRIKEERGR 126

Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
            + + ++++    D+P  R + F   + I  GC   CTYC   + RG   S     ++  
Sbjct: 127 IIEVWNQEEGLIPDIPYKREDDFKAWISIIQGCNNFCTYCIVPYVRGRERSRPAADIISE 186

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
            R + ++GVKE+ L  ++  +YG+D+   ++   LL  +      +G   +R   ++P  
Sbjct: 187 ARKLASEGVKEITLLGQNVNSYGKDLKEDIDFADLLKRLNR---VEGIKRIRYMTSHPRD 243

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + +I +     C +   H+PVQSGS  +L  MNR YT +++  ++  +   +P   
Sbjct: 244 FSDKMIKIIKECDKVCEH--FHLPVQSGSTRILKKMNRGYTQAEYLNLIKKIKSQIPDYS 301

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
           I TDII GFPGET+EDF +T+ +I+E +F   +  ++ PR GTPAAR K   S  +K+
Sbjct: 302 ITTDIIVGFPGETEEDFQETLKVIREVRFDMAYTFKYSPRKGTPAARHKDQVSEKIKQ 359


>gi|422301887|ref|ZP_16389252.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcystis aeruginosa PCC 9806]
 gi|389789024|emb|CCI14978.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcystis aeruginosa PCC 9806]
          Length = 446

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/396 (31%), Positives = 198/396 (50%), Gaps = 29/396 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  ++++ EAD+ L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
              K+      LVVAGCV Q  G + L+ +  V  I+G Q  +R+ +++++   G +V  
Sbjct: 69  AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ K RR+  +    +NV  GC   CTYC     RG   S T  ++   + 
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEME 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
            +   G +E+ L  ++  AYGRD+      G +L    + +       G   LR   ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
            +  E L +  + L  P V    H+P QSG + VL AM R YT   +R ++  +  L+P 
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTQEKYRQIIANIRNLMPD 304

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
             I+ D I GFPGET+  F  T+ L+ E  F Q++ + + PRPGTPAA      S  VK 
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKS 364

Query: 405 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEI 435
              +R   L  T   E    YL   GR+E I + ++
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDV 397


>gi|418634076|ref|ZP_13196474.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU129]
 gi|420189484|ref|ZP_14695458.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM037]
 gi|420204215|ref|ZP_14709775.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM015]
 gi|374838068|gb|EHS01625.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU129]
 gi|394262034|gb|EJE06819.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM037]
 gi|394274229|gb|EJE18654.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM015]
          Length = 514

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 188/365 (51%), Gaps = 16/365 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L+A GY+ T +  EAD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V +V G   I  + E++EE    K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G +E+ L  ++  +YG+DI   L   L  ++ ++       +R   ++P  
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  + +   +   +H+PVQSG++ VL  M R+YT   +  +V  + E +P + 
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEAIPNVA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T+ L  + +F   +   +  R GTPAA+MK  VP  V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLTLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVPLEVKKER 425

Query: 407 SRELT 411
            + L 
Sbjct: 426 LQRLN 430


>gi|159027937|emb|CAO87100.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 446

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/396 (31%), Positives = 199/396 (50%), Gaps = 29/396 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  ++++ EAD+ L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
              K+      LVVAGCV Q  G + L+ +  V  I+G Q  +R+ +++++   G +V  
Sbjct: 69  AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ K RR+  +    +NV  GC   CTYC     RG   S T  ++   + 
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEME 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
            +   G +E+ L  ++  AYGRD+      G +L    + +       G   LR   ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
            +  E L +  + L  P V    H+P QSG + +L AM R YT   +R ++  + +L+P 
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRDLMPD 304

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
             I+ D I GFPGET+  F  T+ L+ E  F Q++ + + PRPGTPAA      S  VK 
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKS 364

Query: 405 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEI 435
              +R   L  T   E    YL   GR+E I + ++
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDV 397


>gi|344996160|ref|YP_004798503.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|343964379|gb|AEM73526.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 471

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/385 (31%), Positives = 196/385 (50%), Gaps = 22/385 (5%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
           T+GC  N  DSE +AG L+A GY  T+N +EAD+ + NTC+V+  ++S +   I   K  
Sbjct: 42  TYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNIGPLKRL 101

Query: 123 SAKKP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVR 172
             KKP   + V GC+PQ     ++L  +      I G + + +  +++    T K   + 
Sbjct: 102 KDKKPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKKTVID 161

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           +   + +    +P  RR      + I  GC   C+YC   + RG   S   E ++  +  
Sbjct: 162 VSEDEDVVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRRPEEIIYEIEQ 221

Query: 233 VIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           +  +GVKEV L  ++  +YG+D+G  +  P LL   V E+   G   +R   ++P  + +
Sbjct: 222 LAQNGVKEVTLLGQNVNSYGKDLGNGITFPKLLEK-VNEIK--GIERIRFVTSHPKDLSD 278

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
            L      L   C +  +H+PVQSGS  +L AMNR YT  D+  +V+ L   +P + I T
Sbjct: 279 ELIVAMRDLEKVCEH--IHLPVQSGSTRILKAMNRHYTKEDYLRLVEKLKTNIPDIAITT 336

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 409
           DII GFPGETDEDF  T+++ ++ +F   +   +  R GTPA +M  +VP  +  +R ++
Sbjct: 337 DIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQVPDDIKHQRFQQ 396

Query: 410 LTSVFE--AFTPYLGMEGRVERIWI 432
           L  + E  A      M G+   I I
Sbjct: 397 LVKLIEEIALKKNRQMLGKTYEILI 421


>gi|347820329|ref|ZP_08873763.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Verminephrobacter aporrectodeae subsp. tuberculatae
           At4]
          Length = 447

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/388 (33%), Positives = 202/388 (52%), Gaps = 20/388 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           +++KTFGC  N+ DS+ MA  L +A GY  T N +EAD+ L NTC+V+  +Q  + + + 
Sbjct: 5   VFIKTFGCQMNEYDSDKMADVLRAAQGYETTRNLDEADLILFNTCSVREKAQEKVFSDLG 64

Query: 120 KCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
           + K  K   V   V GCV   +G++ ++    V +V G Q + R+ E++E+  +    ++
Sbjct: 65  RVKHLKARGVRIGVGGCVASQEGAQIIERAPYVDLVFGPQTLHRLPEMLEQCERLDRAQV 124

Query: 174 -LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
            +   ++   D LP  R       + +  GC   C+YC   + RG   S   + ++  V 
Sbjct: 125 DISFPEIEKFDHLPPARVEGASAFVSVMEGCSKYCSYCVVPYTRGEEVSRPFDDVLVEVA 184

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGMTNPPF 287
            +   GVKEV L  ++  A+   +G    +    LL   VAE+P  G   +R   ++P  
Sbjct: 185 GLAEQGVKEVTLLGQNVNAFRGRMGDTAELADFALLLEYVAEIP--GIERIRFTTSHPNE 242

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
               L  I    R P + S LH+PVQ GSD +L AM R YT  ++++ V  L  + P + 
Sbjct: 243 FTPRL--IGAYARIPKLASHLHLPVQHGSDRILMAMKRGYTAMEYKSTVRKLRAIRPALA 300

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 406
           +++D I GFPGET +DF++T+ LI E  F       F PRPGTPAA +    P AV  +R
Sbjct: 301 LSSDFIVGFPGETQDDFDKTMRLIDEIGFDNSFSFLFSPRPGTPAASLHDATPHAVKLRR 360

Query: 407 SRELTSVFEAFTPYL--GMEGRVERIWI 432
            ++L  V +A    L  G+ G V+RI +
Sbjct: 361 LQQLQGVIDANIQSLSAGLVGTVQRILV 388


>gi|379795659|ref|YP_005325657.1| (Dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus MSHR1132]
 gi|356872649|emb|CCE58988.1| (Dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
           aureus subsp. aureus MSHR1132]
          Length = 514

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/375 (31%), Positives = 191/375 (50%), Gaps = 22/375 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E +AG L A GY  T +   AD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVIAGILEALGYQATSDINVADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V ++ G   I  + E++EE    K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR+      + I  GC   CTYC     RG   S   E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVRQGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTN 284
             VR +  +G KE+ L  ++  +YG+D+     +L  LL AI     P     +R   ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDMQYDLGDLLEAISKIAIP----RVRFTTSH 304

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           P    +H+ ++  +     +   +H+PVQSG++AVL  M R+YT   +  +V  + E +P
Sbjct: 305 PWDFTDHMIDV--IAEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIKERIP 362

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
            + + TDII G+P E++E F +T+ L  E KF   +   +  R GTPAA+MK  VP  V 
Sbjct: 363 NVALTTDIIVGYPNESEEQFEETLTLYDEVKFEHAYTYLYSQRDGTPAAKMKDNVPLDVK 422

Query: 404 KKRSRELTSVFEAFT 418
           K+R + L  +   ++
Sbjct: 423 KERLQRLNKMVGHYS 437


>gi|304316819|ref|YP_003851964.1| MiaB family RNA modification protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778321|gb|ADL68880.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 471

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 193/370 (52%), Gaps = 26/370 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC  N  DSE +AG L+  GY  TDN E+AD+ L NTC V+  ++  +   +++ 
Sbjct: 36  HIETYGCQMNVHDSEKLAGMLTEMGYTHTDNLEDADVILFNTCCVREHAEIRIFGRVSQL 95

Query: 122 KSAK--KP---LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVEETLKGHE- 170
           K  K  KP   L + GC+ Q    ++ ++     + IV G   + +  E+++E+L     
Sbjct: 96  KELKQRKPNIILGICGCMMQEKEVVEAIKNDYPYIDIVFGTHNLFKFPELLQESLNSDTT 155

Query: 171 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
            + +    K    D+P  R       + I  GC   CTYC   + RG   S     ++  
Sbjct: 156 IIDIWDDNKSIVEDIPIRRAEGLKAWVNIIYGCNNFCTYCIVPYVRGREKSREPHDILNE 215

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGV-----NLPILLNAIVAELPPDGSTMLRIGMTN 284
           ++++  +G KE+ L  ++  +YG D+ +     +L  ++N I      DG   +R   ++
Sbjct: 216 IKSLANEGFKEITLLGQNVNSYGNDLPIKIDFADLLYMINDI------DGIERIRFMTSH 269

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           P  I + L      L   C +  LH+PVQSGS+ +L  MNR+Y+   +  +++ L + +P
Sbjct: 270 PKDISDKLIFAMRDLDKLCEH--LHLPVQSGSNKILERMNRKYSRERYLEIINKLRDNIP 327

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVV 403
           G+ I TDII GFPGETD+DF  T++L+KE ++   +   +  R GTPA +M  +V   + 
Sbjct: 328 GIAITTDIIVGFPGETDKDFQDTLDLVKEVRYDSAYTFIYSKRKGTPAEKMSNQVDEDIK 387

Query: 404 KKRSRELTSV 413
            KR  EL ++
Sbjct: 388 HKRLEELINL 397


>gi|242242576|ref|ZP_04797021.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
           W23144]
 gi|418329422|ref|ZP_12940490.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis 14.1.R1.SE]
 gi|418615521|ref|ZP_13178463.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU118]
 gi|418630421|ref|ZP_13192903.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU128]
 gi|420174938|ref|ZP_14681384.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM061]
 gi|420191659|ref|ZP_14697570.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM023]
 gi|242234003|gb|EES36315.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
           W23144]
 gi|365230457|gb|EHM71552.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis 14.1.R1.SE]
 gi|374816960|gb|EHR81151.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU118]
 gi|374837962|gb|EHS01520.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis VCU128]
 gi|394244471|gb|EJD89813.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM061]
 gi|394265810|gb|EJE10457.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM023]
          Length = 514

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 188/365 (51%), Gaps = 16/365 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L+A GY+ T +  EAD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V +V G   I  + E++EE    K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G +E+ L  ++  +YG+DI   L   L  ++ ++       +R   ++P  
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  + +   +   +H+PVQSG++ VL  M R+YT   +  +V  + E +P + 
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEAIPNVA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T+ L  + +F   +   +  R GTPAA+MK  VP  V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLTLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVPLEVKKER 425

Query: 407 SRELT 411
            + L 
Sbjct: 426 LQRLN 430


>gi|423611991|ref|ZP_17587852.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD107]
 gi|401246998|gb|EJR53342.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
           cereus VD107]
          Length = 509

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 204/397 (51%), Gaps = 29/397 (7%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +  GY  T ++EEAD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRHPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL ++  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+M+  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424

Query: 408 RELTSVFEAFT-----PYLGMEGRVERIWITEIAADG 439
           + L ++   +       Y+G         I E+  DG
Sbjct: 425 QCLNTLVNEYAINKNKHYIGQ--------IVEVLVDG 453


>gi|312622276|ref|YP_004023889.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202743|gb|ADQ46070.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 471

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/385 (32%), Positives = 196/385 (50%), Gaps = 22/385 (5%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
           T+GC  N  DSE +AG L+A GY  T+N +EAD+ + NTC+V+  ++S +   I   K  
Sbjct: 42  TYGCQMNVHDSEKLAGILNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNIGPLKRL 101

Query: 123 SAKKP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVR 172
             KKP   + V GC+PQ     ++L  +      I G + + +  +++    T K   + 
Sbjct: 102 KEKKPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKKTVID 161

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           +   + +    +P  RR      + I  GC   C+YC   + RG   S   E ++  +  
Sbjct: 162 VSEDEDVVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRQPEEIIYEIEQ 221

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNL--PILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           +  +G+KEV L  ++  +YG+D+G N+  P LL   V E+   G   +R   ++P  + +
Sbjct: 222 LAQNGIKEVTLLGQNVNSYGKDLGNNITFPKLLEK-VNEIK--GIERIRFVTSHPKDLSD 278

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
            L      L   C +  +H+PVQSGS  +L AMNR YT  D+  +V+ L   +P + I T
Sbjct: 279 ELIVAMRDLEKVCEH--IHLPVQSGSTRILKAMNRHYTKEDYLRLVEKLKTNIPDIAITT 336

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 409
           DII GFPGETDEDF  T+++ ++ +F   +   +  R GTPA +M  +VP  +  +R + 
Sbjct: 337 DIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQVPDNIKHQRFQR 396

Query: 410 LTSVFE--AFTPYLGMEGRVERIWI 432
           L  + E  A      M GR   I I
Sbjct: 397 LVKLVEEIALKKNRQMLGRTYEILI 421


>gi|304439566|ref|ZP_07399471.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371945|gb|EFM25546.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 433

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 128/368 (34%), Positives = 188/368 (51%), Gaps = 29/368 (7%)

Query: 63  MKTF-----GCSHNQSDSEYMAGQLSAFGYALTDNSEE-ADIWLINTCTVKSPSQSAMDT 116
           MKTF     GC  NQ +SE M       GY   D+  + AD++++NTCTV + S      
Sbjct: 1   MKTFSILTLGCKVNQYESEAMKEIFEKNGYIEVDSETDVADVYVVNTCTVTNLSDRKSRQ 60

Query: 117 LI--AKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
            I  AK ++    + V GC  Q S D ++ +EGV I+ G     R+ E+VE   K  + +
Sbjct: 61  YIRRAKRENPDSIVCVVGCYSQVSPDEVQAIEGVDIIMGTTDRSRIFELVE-NFKKDKNQ 119

Query: 173 LLHRKKLPAL-DLPKVRRNKFVEI----LPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           +   K L    +   +  +K  E+    + +  GC   CTYC   +ARG + S T+E  V
Sbjct: 120 ISIVKSLKGFTEFQHIEIDKESEMTRSYMKVQDGCNRYCTYCIIPYARGPIRSRTIEDSV 179

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
              + +   G KE+ L+    G+YG+D+G     L++ I      DG   +R+    P  
Sbjct: 180 EEAKRLSEAGYKELVLTGIHIGSYGKDLGDER--LVDLIEEITKVDGIERIRLSSIEPIT 237

Query: 288 I----LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           I    LE +K   +V  H       H+ +QSGS+AVL AMNR YT  ++    D + E  
Sbjct: 238 ITRDFLERIKATGKVCDH------FHLSLQSGSNAVLKAMNRRYTREEYIETCDLIREYY 291

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
           P + + TDII GFPGETDEDF  TV+L+K  +F ++H+ ++  R GTPAA MK      +
Sbjct: 292 PYVGLTTDIIVGFPGETDEDFEDTVDLVKRVEFSKIHVFKYSKRSGTPAAEMKNQVDGNI 351

Query: 404 K-KRSREL 410
           K +RS  L
Sbjct: 352 KIERSNRL 359


>gi|292670089|ref|ZP_06603515.1| tRNA-I(6)A37 thiotransferase [Selenomonas noxia ATCC 43541]
 gi|292648277|gb|EFF66249.1| tRNA-I(6)A37 thiotransferase [Selenomonas noxia ATCC 43541]
          Length = 472

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/376 (32%), Positives = 191/376 (50%), Gaps = 28/376 (7%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
           G    +M T GC  NQ ++E M G   A GY +    E A++++INTC+V   S      
Sbjct: 37  GLRAAFM-TLGCKVNQFETETMEGLFRARGYEIVPFEEAAEVYVINTCSVTHLSDRKSRQ 95

Query: 117 LIAKCKSAK--KPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH--- 169
           LI +         + VAGC  Q    +++ L GV +V G ++  ++V+ VE  L+ +   
Sbjct: 96  LIRRAARTNPDACIAVAGCYAQVAPEEIRALAGVRVVIGTKERAQIVDYVEAALQKNAGV 155

Query: 170 --------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
                   + R+   + +P   +P   R      L I  GC   CT+C   +ARG + S 
Sbjct: 156 IGAITDIMQARVF--EDIPLRSMPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSR 209

Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
            + ++   +  +   G  EV L+    GAYG D+    P L +A    L       LR+G
Sbjct: 210 ELSAVAREMHLLTEAGFHEVVLTGIHLGAYGIDLAAR-PTLADACRTALGEAKLRRLRLG 268

Query: 282 MTNPPFILEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
                  +E   ++ E++R  P   + LH+P+Q+GSDAVL AMNR Y  + F  ++  + 
Sbjct: 269 SLES---VELSADLLELIRTEPRFAAHLHLPLQAGSDAVLRAMNRHYDTAAFAQLIADVR 325

Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVP 399
             VPG+ ++TDII GFPGET+EDF   ++ ++   F ++H+  + PR GTPAA R  +VP
Sbjct: 326 RAVPGVAVSTDIIVGFPGETEEDFAAGMDFVRAMGFARMHVFPYSPRRGTPAAQRADQVP 385

Query: 400 SAVVKKRSRELTSVFE 415
            AV K+R+  + ++ E
Sbjct: 386 PAVRKERAARMQALAE 401


>gi|307154937|ref|YP_003890321.1| MiaB family RNA modification protein [Cyanothece sp. PCC 7822]
 gi|306985165|gb|ADN17046.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7822]
          Length = 446

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/402 (31%), Positives = 206/402 (51%), Gaps = 41/402 (10%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   GY  +++  EAD+ L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEDLGYQWSEDPNEADLVLYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAK--KP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K  KP   L+VAGCV Q  G + L+ +  + +V G Q  + + +++++   GH++  
Sbjct: 69  AKRKHEKPDLTLIVAGCVAQQEGEKLLRRVPELDLVMGPQYANLLQDLLKQVEDGHQIVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ K RR   V    +NV  GC   C+YC   + RG   S T +++   + 
Sbjct: 129 TEPIHI-VEDITKPRRESRVSAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPQAIRAEME 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
            +   G KE+ L  ++  AYGRD+      G +L  L + +  V ++P  G   +R   +
Sbjct: 187 ELGRQGYKEITLLGQNIDAYGRDLPGVTATGRHLHTLTDLLYYVNDVP--GIERIRFATS 244

Query: 284 NPPFILEHL----KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
           +P +  E L    KE+ +V  H       H+P QSG + +L AM R YT   +R +++ +
Sbjct: 245 HPRYFTERLIVACKELPKVCEH------FHIPFQSGDNQILKAMKRGYTQEKYRQIIEKI 298

Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 399
             L+P   I+ D I GFPGET+E F  T+ L+ +  F Q++ + + PRPGTPAA      
Sbjct: 299 RSLMPDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWDNQL 358

Query: 400 SAVVK----KRSRELTSV--FEAFTPYLGMEGRVERIWITEI 435
           S  VK    +R   L  +   E    YL   GR E + + E+
Sbjct: 359 SEEVKSDRLQRLNHLVGIKAAERSQRYL---GRTEEVLVEEV 397


>gi|296454331|ref|YP_003661474.1| MiaB family RNA modification protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183762|gb|ADH00644.1| RNA modification enzyme, MiaB family [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 479

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/397 (30%), Positives = 194/397 (48%), Gaps = 27/397 (6%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD----NSEEADIWLINTCTVKSPSQS 112
           G    ++ T GC  N  DSE +AG L A GY        N  + D+ ++NTC V+  +  
Sbjct: 22  GKGVFHIHTLGCQMNVHDSERIAGVLEANGYVPATEGQINDNDLDLLVLNTCAVRENAAE 81

Query: 113 AMDTLIAKCKSAK--KP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVV 162
            M   I +    K  +P   + V GC+ Q  R  K++   +     + G + I+ + +++
Sbjct: 82  RMYGTIGRFNRVKLVRPNLQIAVGGCMAQLDR--KKIADTAPWVSAVFGTKNIEDLPKLL 139

Query: 163 EETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
           ++     + ++   ++L      LP  R ++    + I+VGC   CT+C     RG    
Sbjct: 140 DQNRATGKAQVQVTEQLRQFPSQLPAARASRISSWVAISVGCNNTCTFCIVPTTRGKEKD 199

Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTML 278
                ++  +R  +ADG KEV L  ++  ++G  IG       LL A       DG   +
Sbjct: 200 RRPGDILDEIRQCVADGAKEVTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERV 256

Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
           R    +P    + +  IA +   P +   LH P+QSGSD +L AM R Y  + F  ++  
Sbjct: 257 RFTSPHPAAFTDDV--IAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 314

Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 398
           + E +P  QI+TDII GFPGET+EDF QT++++++ +F       + PRPGTPAA M+++
Sbjct: 315 IREAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAMEQI 374

Query: 399 PSAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWIT 433
           P  VV+ R   L ++ E  T       EGR   + IT
Sbjct: 375 PRDVVQDRFDRLVALQEQITEENLATFEGRDVEVMIT 411


>gi|397662316|ref|YP_006503016.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Taylorella
           equigenitalis ATCC 35865]
 gi|394350495|gb|AFN36409.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Taylorella
           equigenitalis ATCC 35865]
          Length = 469

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 203/386 (52%), Gaps = 39/386 (10%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
           G + +Y+KTFGC  N+ DSE MA  L A  G  LTDN E+AD+ L+NTC+++  SQ  + 
Sbjct: 29  GAKKLYIKTFGCQMNEYDSEKMADVLHAEKGLELTDNPEDADVILLNTCSIREKSQEKVF 88

Query: 116 TLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
           + + +    KK      + V GCV   +G+  L+    V I+ G Q + R+ E++E+  K
Sbjct: 89  SDLGRINLLKKKKPELLIGVGGCVASQEGATILQRAPYVDIIFGPQTLHRLPELIEQ--K 146

Query: 168 GHEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
               R       P ++    LP  R N     + I  GC   C+YC   + RG   S  +
Sbjct: 147 ESSGRAQVDVSFPEIEKFDHLPPARINGPTAFVSIMEGCSKYCSYCVVPYTRGEEISRPL 206

Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
           E ++  V  +   GVKE+ L  ++  AY   +G +  I   A++ EL  D   + RI   
Sbjct: 207 EDVLIEVADLADQGVKEINLLGQNVNAYRGTVGEDGEIADFAMLLELIHDIPGVERIR-- 264

Query: 284 NPPFILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
              +I  H KE+ + L     + P +  FLH+PVQ+GSD VL+AM R YT  ++++VV +
Sbjct: 265 ---YITSHPKEMTKRLIEAHAKLPKLVPFLHLPVQAGSDRVLAAMKRGYTSLEYKSVVRS 321

Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA----- 393
           L +  PG+ +++D I GFPGET++DF  T+ LIK+          +  RPGTPAA     
Sbjct: 322 LYKARPGLTLSSDFIVGFPGETEDDFEATLKLIKDLNIDTSFSFIYSRRPGTPAADLPDD 381

Query: 394 --------RMKKVPSAVVKKRSRELT 411
                   R++++  A+V K+++E +
Sbjct: 382 TPYEVKLDRLQRL-QALVNKQAKEFS 406


>gi|373455512|ref|ZP_09547343.1| MiaB-like tRNA modifying enzyme [Dialister succinatiphilus YIT
           11850]
 gi|371934774|gb|EHO62552.1| MiaB-like tRNA modifying enzyme [Dialister succinatiphilus YIT
           11850]
          Length = 434

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/359 (33%), Positives = 185/359 (51%), Gaps = 25/359 (6%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  NQ DS+ M       GY      E+AD++++NTC+V S        ++ + + A
Sbjct: 5   TLGCKVNQYDSDAMRTLFIRNGYTQAGEDEDADVYVVNTCSVTSIGDRKSRQMVRRIRRA 64

Query: 125 KKP--LVVAGCVPQGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHE---------- 170
                + VAGC  Q + ++ E  G    IVGVQ    +V+ VEE +   +          
Sbjct: 65  HPSAIIAVAGCYAQLAPEVFEKMGDVDVIVGVQNRSHIVDYVEEAMGRTDRKPLNETVDI 124

Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           +++ H + +      +VR   FV++     GC   CT+C   +ARG L S   +  V  +
Sbjct: 125 MKVDHFENMSVDVSGEVRTRAFVKVQE---GCDNYCTFCIIPYARGKLKSRLQKDAVDEI 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
           R + A G +EV L+    G YG+D+  G +L  L+  +V ++P      +R+G      +
Sbjct: 182 RKLAAQGYREVVLTGIHLGNYGKDLHDGTSLATLVAELV-KIP--NLLRIRLGSVESVEL 238

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            E L  I +    P V   LH+P+QSGSDAVL  MNR Y L  F+ ++  L   VPG+ +
Sbjct: 239 SEDLISIMQ--NEPKVCRHLHLPIQSGSDAVLKGMNRHYRLPQFKKLISELRAKVPGIAL 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 406
            TD+I GFPGET+E+F +T+  +KE +F  +H+  +  R GTPAA    +V + V K+R
Sbjct: 297 TTDLIVGFPGETEENFQETLETLKEIRFSGIHVFPYSRRTGTPAASYPNQVTNEVKKER 355


>gi|427420460|ref|ZP_18910643.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Leptolyngbya sp. PCC 7375]
 gi|425756337|gb|EKU97191.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Leptolyngbya sp. PCC 7375]
          Length = 450

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 130/404 (32%), Positives = 201/404 (49%), Gaps = 29/404 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G   T+N  EAD+ L NTCT++  ++  + + + K 
Sbjct: 7   HITTFGCQMNKADSERMAGILDDMGMNWTENPLEADVVLYNTCTIRDNAEQKVYSYLGKQ 66

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K+      L+VAGCV Q  G   L+ +  + +V G Q  +R+ +++E+   G++V  
Sbjct: 67  AKRKQSDPNVTLIVAGCVAQQEGESLLRRVPELDLVMGPQHANRLSDLLEQVFSGNQVVA 126

Query: 174 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
                +   D+ K RR+ K    + +  GC   CTYC     RG   S T E++   +  
Sbjct: 127 TEPVHIME-DITKPRRDSKISAWVNVIYGCNERCTYCVVPGVRGIEQSRTPEAIRAEMEL 185

Query: 233 VIADGVKEVWLSSEDTGAYGRDI-GV-------NLPILLNAIVAELPPDGSTMLRIGMTN 284
           +   G  EV L  ++  AYGRD+ G+       N    L   V ++P  G   +R   ++
Sbjct: 186 LGQQGYTEVTLLGQNIDAYGRDLPGITPEGRRQNTLTDLLYYVHDVP--GIERIRFATSH 243

Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           P +  E L K  AE+   P V    H+P QSG + VL AM R YT   +R ++DT+   V
Sbjct: 244 PRYFTERLIKACAEL---PKVCEHFHIPFQSGDNDVLKAMARGYTQEKYRRIIDTVRRYV 300

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
           P   I+ D I GFPGET+  F  T+ L+++  F Q++ + + PRP TPAA  +       
Sbjct: 301 PDAAISADAIVGFPGETEGQFQNTLKLVEDIGFDQLNTAAYSPRPNTPAALWESQLDEPT 360

Query: 404 K----KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           K    +R   L S+ +A         R+ER+ I ++     H V
Sbjct: 361 KSDRLQRLNHLVSI-QAAERSQRYANRIERVLIEDVNPKNPHQV 403


>gi|425447602|ref|ZP_18827587.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcystis aeruginosa PCC 9443]
 gi|389731777|emb|CCI04191.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcystis aeruginosa PCC 9443]
          Length = 446

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/396 (31%), Positives = 198/396 (50%), Gaps = 29/396 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  ++++ EAD+ L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
              K+      LVVAGCV Q  G + L+ +  V  I+G Q  +R+ +++++   G +V  
Sbjct: 69  AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ K RR+  +    +NV  GC   CTYC     RG   S T  ++   + 
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEME 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
            +   G +E+ L  ++  AYGRD+      G +L    + +       G   LR   ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
            +  E L +  + L  P V    H+P QSG + +L AM R YT   +R ++  +  L+P 
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRNLMPD 304

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
             I+ D I GFPGET+  F  T+ L+ E  F Q++ + + PRPGTPAA      S  VK 
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKS 364

Query: 405 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEI 435
              +R   L  T   E    YL   GR+E I + ++
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDV 397


>gi|170078520|ref|YP_001735158.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           sp. PCC 7002]
 gi|229891029|sp|B1XQK7.1|MIAB_SYNP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|169886189|gb|ACA99902.1| tRNA-i(6)A37 thiotransferase enzyme [Synechococcus sp. PCC 7002]
          Length = 451

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 186/363 (51%), Gaps = 28/363 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   GY  T++   AD+ L NTCT++  ++  + + + + 
Sbjct: 8   HITTFGCQMNKADSERMAGILEEMGYHFTEDPYAADLVLYNTCTIRDNAEQKVYSYLGRQ 67

Query: 122 KSAK--KP---LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
              K  KP   L+VAGCV Q       R + EL+   I+G Q  +R+ +++E+   G +V
Sbjct: 68  AKRKQEKPDLTLIVAGCVAQQEGESLLRRVPELD--LIMGPQHANRLQDLLEQVEGGSQV 125

Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
                  +   D+ K RR+  V    +NV  GC   CTYC     RG   S   E++   
Sbjct: 126 VATEPIHI-VEDITKPRRDSTVTAW-VNVIYGCNEHCTYCVVPGVRGTEQSRYPEAIRAE 183

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIG 281
           +  +   G KEV L  ++  AYGRD+      G N   L + +  V ++P  G   +R  
Sbjct: 184 MEELGRQGFKEVTLLGQNIDAYGRDLPGTTPEGRNKYTLTDLLYYVHDVP--GIERIRFA 241

Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
            ++P +  E L +  + L  P V    H+P QSG + VL AM R YT   +R +++T+  
Sbjct: 242 TSHPRYFTERLIKACQEL--PKVCEHFHIPFQSGDNEVLKAMRRGYTHEKYRRIINTIRS 299

Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
            +P   I+ D I  FPGET+E F  T+ L+ E  F Q++ + + PRPGTPAA      S 
Sbjct: 300 YMPDASISADAIVAFPGETEEQFENTLKLVDEIGFDQLNTAAYSPRPGTPAATWDNQLSE 359

Query: 402 VVK 404
            VK
Sbjct: 360 EVK 362


>gi|312793678|ref|YP_004026601.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180818|gb|ADQ40988.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 471

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/385 (31%), Positives = 195/385 (50%), Gaps = 22/385 (5%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
           T+GC  N  DSE +AG L+A GY  T+N +EAD+ + NTC+V+  ++S +   I   K  
Sbjct: 42  TYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNIGPLKRL 101

Query: 123 SAKKP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVR 172
             KKP   + V GC+PQ     ++L  +      I G + + +  +++    T K   + 
Sbjct: 102 KDKKPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKKTVID 161

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           +   + +    +P  RR      + I  GC   C+YC   + RG   S   E ++  +  
Sbjct: 162 VSEDEDVVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRRPEEIIYEIEQ 221

Query: 233 VIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           +  +GVKEV L  ++  +YG+D+G  +  P LL   V E+  +G   +R   ++P  + +
Sbjct: 222 LAQNGVKEVTLLGQNVNSYGKDLGNGITFPKLLEK-VNEI--EGIERIRFVTSHPKDLSD 278

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
            L      L   C    +H+PVQSGS  +L AMNR YT  D+  +V+ L   +P + I T
Sbjct: 279 ELIVAMRDLEKVC--EHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEKLKTNIPDIAITT 336

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 409
           DII GFPGETDEDF  T+++ ++ +F   +   +  R GTPA +M  +VP  +  +R + 
Sbjct: 337 DIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQVPDDIKHQRFQR 396

Query: 410 LTSVFE--AFTPYLGMEGRVERIWI 432
           L  + E  A      M G+   I I
Sbjct: 397 LVKLVEEIALKKNRQMLGKTYEILI 421


>gi|357058862|ref|ZP_09119708.1| hypothetical protein HMPREF9334_01425 [Selenomonas infelix ATCC
           43532]
 gi|355373208|gb|EHG20529.1| hypothetical protein HMPREF9334_01425 [Selenomonas infelix ATCC
           43532]
          Length = 437

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 176/349 (50%), Gaps = 14/349 (4%)

Query: 66  FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
           +GC  N +D+E M GQL   GY  T+  E AD+ LINTC V+  ++  +   I + K  K
Sbjct: 10  YGCQMNIADAERMEGQLQGAGYERTEEMETADVILINTCCVRETAEDKVYGKIGEIKKIK 69

Query: 126 KP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLH 175
           +        +AGC+ Q   D  ++    +  V G  ++  +  +V E    H   V +  
Sbjct: 70  EKNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELARIVAEIEAEHSPVVDVTL 129

Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
             K  A +LP  R  KF   +PI  GC   CTYC   + RG   S   E +V  VR  +A
Sbjct: 130 ADKTIAENLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEIVAEVRRAVA 189

Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
           +G  EV L  ++  +YG+D        L  +V E+  +G   +R   ++P  I + L + 
Sbjct: 190 EGYTEVTLLGQNVNSYGKDHKQADFADLLRMVDEV--EGIRRVRFMTSHPKDISDKLIDT 247

Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
            +  +H C +  +H+PVQ GS+ +L AMNR YT+  +R     + E +P   + TD+I G
Sbjct: 248 IKNGQHICEH--IHLPVQYGSNRILKAMNRVYTVEKYRERAQRVREALPNASLTTDLIVG 305

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
           FPGETDEDF + +  ++E ++   +   +  R GTPAA M+   S  VK
Sbjct: 306 FPGETDEDFAEMLAFLREMRYDSAYTFLYSKRSGTPAATMECQVSDDVK 354


>gi|300868939|ref|ZP_07113544.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Oscillatoria sp. PCC 6506]
 gi|300333062|emb|CBN58736.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Oscillatoria sp. PCC 6506]
          Length = 452

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/397 (31%), Positives = 206/397 (51%), Gaps = 33/397 (8%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  +++  EA + L NTC+++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEDMGFEWSEDPNEASLILYNTCSIRDSAEHKVYSYLGRQ 68

Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K+      L+VAGCV Q  G   L+ +  + +V G Q  +R+ +++E+   G++V  
Sbjct: 69  AGRKRVEPELTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQVFDGNQVVA 128

Query: 174 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
                +   D+ K RR+ K    + +  GC   CTYC   + RG   S T +++   +  
Sbjct: 129 TDAVHIME-DITKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGIEQSRTPKAIRAEMEE 187

Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
           +   G KEV L  ++  AYGRD+      G N   L + +  V+++P  G   +R   ++
Sbjct: 188 LGRQGYKEVTLLGQNIDAYGRDLPGTKPDGSNQYTLTDLLYYVSDVP--GIERIRFATSH 245

Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           P +  E L K  AE+   P V    H+P QSG + +L AM R YT   +R +++T+ + +
Sbjct: 246 PRYFTERLIKACAEL---PQVCEHFHIPFQSGDNDILKAMARGYTQEKYRRIIETIRQYM 302

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
           P   I+ D I GFPGE++  F +T+NL+ + +F  V+ + + PRPGTPAA      S  V
Sbjct: 303 PDASISADAIVGFPGESEAQFEKTLNLVVDMRFDLVNTAAYSPRPGTPAALWDTQLSEEV 362

Query: 404 K-KRSRELTSV-----FEAFTPYLGMEGRVERIWITE 434
           K  R + L  V      E    YL   GR+E + + +
Sbjct: 363 KADRLQRLNHVVTQTAMERSQRYL---GRIEEVLVED 396


>gi|284048079|ref|YP_003398418.1| MiaB family RNA modification protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283952300|gb|ADB47103.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans
           DSM 20731]
          Length = 437

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 128/384 (33%), Positives = 196/384 (51%), Gaps = 22/384 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           I   T GC  NQSD+  M       G+ + D  E ADI LINTC V +  QS    +I +
Sbjct: 4   IAFYTLGCKVNQSDTASMEKLFRDAGFQIVDFEEPADICLINTCVVTNMGQSKSRKIIHR 63

Query: 121 C-KSAKKPL-VVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETL----KGHEVR 172
             +   KPL VV GC PQ S D +  ++GV  I+G Q   +VVE+V E L        + 
Sbjct: 64  AARRDPKPLIVVTGCYPQTSPDEVVHIDGVDLIIGNQDRSKVVELVRERLGESPDEAPIN 123

Query: 173 LLHR----KKLPALDLP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            +H     ++   LD      RN+    L I  GC   C YC   +ARGHL S +++++ 
Sbjct: 124 AVHDLPVGREFEELDAAVDASRNR--AFLKIQEGCDQYCAYCIIPYARGHLRSRSLDNIR 181

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST-MLRIGMTNPP 286
             V  + A+  KE+ L     G YG++I    P L +A+ A L  +     LR+G     
Sbjct: 182 EEVAKLTAEQYKEIVLIGIHLGCYGKEIPGG-PHLSDAVKAALSAEPQVPRLRLGSLESV 240

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
            + + L ++  + R P + + LH+P+Q+G D+ L+ M+R Y  + F  +++ +  LVP +
Sbjct: 241 EVEDALLDL--MAREPRLCAHLHLPLQAGCDSTLARMHRPYDTAKFAQLLEKIRSLVPNV 298

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406
            I TD+I GFPGET+EDF  +++ I++ +F ++HI  +  R GTPAA M   P  +  + 
Sbjct: 299 AITTDVIVGFPGETEEDFQASLDFIRQCRFSKIHIFPYSQRKGTPAAVM---PDQISNQE 355

Query: 407 SRELTSVFEAFTPYLGMEGRVERI 430
            +E     E       +  R E+I
Sbjct: 356 KQERVHRLEEVDREGNLAYRKEQI 379


>gi|435853697|ref|YP_007315016.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Halobacteroides halobius DSM 5150]
 gi|433670108|gb|AGB40923.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Halobacteroides halobius DSM 5150]
          Length = 442

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 192/366 (52%), Gaps = 24/366 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC  N+ DSE +AG L   GY   D   +AD+ ++NTC V+  ++  +   + + 
Sbjct: 8   FIRTYGCQMNEHDSEKLAGVLKDIGYKPADELAKADVIILNTCCVRENAELKVFGKLGEI 67

Query: 122 KSAKKP---LVVA--GCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVEETLKGHE- 170
           K  KK    L+V   GC+ Q    + +++     V IV G   I R  E+++E    ++ 
Sbjct: 68  KQIKKENPGLIVGICGCMMQQEEVVNKIKQRYNFVDIVFGTHNIHRFPELLQEIKAENQS 127

Query: 171 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
            V +    +    D+P  R       + I  GC   CTYC   + RG   S + E ++  
Sbjct: 128 LVEVWDDSREVIGDMPTNREEDHKAKVNIIHGCDNYCTYCIVPYVRGSERSRSQEDIIKE 187

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAI--VAELPPDGSTMLRIGMTNP 285
           ++ ++ADGVKEV L  ++  +YG+D+G +L    LL A+  +  LP      +R   ++P
Sbjct: 188 IKKLVADGVKEVMLLGQNVNSYGKDLGQDLDFADLLTAVNKIKGLP-----RIRFMTSHP 242

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
               + L E    L + C +   H+P+QSGSD +L  MNR YT  ++  +V  L    P 
Sbjct: 243 RDFSDKLIEAVTNLENVCEH--FHLPIQSGSDKLLKKMNRGYTKEEYLDLVTKLKAKNPK 300

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
             I+TD+I GFPGET+EDF +T+ L K+ +F +     +  R GTPAA+M ++VP    K
Sbjct: 301 AAISTDLIVGFPGETEEDFAETMELYKQVRFDRAFTFIYSKRTGTPAAKMEEQVPEEKKK 360

Query: 405 KRSREL 410
           +R + L
Sbjct: 361 ERHQRL 366


>gi|428305612|ref|YP_007142437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Crinalium epipsammum PCC
           9333]
 gi|428247147|gb|AFZ12927.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Crinalium epipsammum PCC
           9333]
          Length = 458

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 126/395 (31%), Positives = 201/395 (50%), Gaps = 29/395 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  +++   A + L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEDMGFEWSEDPNNAKVILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K       LVVAGCV Q  G   L+ +  + +V G Q  +R+ E++E+ L G++V  
Sbjct: 69  AKRKHEEPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKELLEQVLDGNQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
               ++   D+ K RR+  V    +NV  GC   CTYC     RG   S T E++   + 
Sbjct: 129 TEPIQI-VEDITKPRRDSTVSAW-VNVIYGCNERCTYCVVPSVRGVEQSRTPEAIRAEME 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
            +   G KE+ L  ++  AYGRD+      G +   L + +  V ++P  G   +R   +
Sbjct: 187 ELSHQGYKEITLLGQNIDAYGRDLPGVTKEGRHQHTLTDLLYYVHDVP--GIERIRFATS 244

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           +P +  E L +    L  P V    H+P QSG + +L AM R YT   +R ++DT+   +
Sbjct: 245 HPRYFTERLIQACAEL--PKVCEHFHIPFQSGDNELLKAMARGYTHEKYRRIIDTIRRYM 302

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
           P   I  D I GFPGET++ F  T+ LI++  F  V+ + + PRPGTPAA   +  S  V
Sbjct: 303 PDASITADAIVGFPGETEQQFENTLKLIEDISFDLVNTAAYSPRPGTPAAVWDQQLSEQV 362

Query: 404 K----KRSRELTSVFEAFTPYLGMEGRVERIWITE 434
           K    +R   L S+ +A        GR+E + + +
Sbjct: 363 KSDRLQRINHLVSI-QAAERSQRYFGRIEEVLVED 396


>gi|425436058|ref|ZP_18816499.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcystis aeruginosa PCC 9432]
 gi|389679291|emb|CCH91904.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcystis aeruginosa PCC 9432]
          Length = 446

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/396 (31%), Positives = 199/396 (50%), Gaps = 29/396 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  ++++ EAD+ L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
              K+      LVVAGCV Q  G + L+ +  V  I+G Q  +R+ +++++   G +V  
Sbjct: 69  AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ K RR+  +    +NV  GC   CTYC     RG   S T  ++   + 
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
            +   G +E+ L  ++  AYGRD+      G +L    + +       G   LR   ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
            +  E L +  + L  P V    H+P QSG + +L AM R YT   +R ++  + +L+P 
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRRIIANIRDLMPD 304

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
             I+ D I GFPGET+  F  T+ L+ E  F Q++ + + PRPGTPAA      S  VK 
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKS 364

Query: 405 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEI 435
              +R   L  T   E    YL   GR+E I + ++
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDV 397


>gi|425451699|ref|ZP_18831519.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcystis aeruginosa PCC 7941]
 gi|389766860|emb|CCI07600.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcystis aeruginosa PCC 7941]
          Length = 446

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/396 (31%), Positives = 199/396 (50%), Gaps = 29/396 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  ++++ EAD+ L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
              K+      LVVAGCV Q  G + L+ +  V  I+G Q  +R+ +++++   G +V  
Sbjct: 69  AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ K RR+  +    +NV  GC   CTYC     RG   S T  ++   + 
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
            +   G +E+ L  ++  AYGRD+      G +L    + +       G   LR   ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
            +  E L +  + L  P V    H+P QSG + +L AM R YT   +R ++  + +L+P 
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRDLMPD 304

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
             I+ D I GFPGET+  F  T+ L+ E  F Q++ + + PRPGTPAA      S  VK 
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDHQLSEQVKS 364

Query: 405 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEI 435
              +R   L  T   E    YL   GR+E I + ++
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDV 397


>gi|422343558|ref|ZP_16424486.1| MiaB-like tRNA modifying enzyme [Selenomonas noxia F0398]
 gi|355378865|gb|EHG26045.1| MiaB-like tRNA modifying enzyme [Selenomonas noxia F0398]
          Length = 435

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/368 (32%), Positives = 188/368 (51%), Gaps = 27/368 (7%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  NQ ++E M G   A GY +    E A++++INTC+V   S      LI +    
Sbjct: 7   TLGCKVNQFETETMEGLFRARGYEIVPFEEAAEVYVINTCSVTHLSDRKSRQLIRRAART 66

Query: 125 KKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH----------- 169
                + VAGC  Q    +++ L GV +V G ++  ++V+ VE  L+ +           
Sbjct: 67  NPDACIAVAGCYAQVAPEEIRALAGVRVVIGTKERAQIVDYVEAALQKNAGVIGTITDIM 126

Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           + R+   + +P   +P   R      L I  GC   CT+C   +ARG + S  + ++   
Sbjct: 127 QARVF--EDIPLRSMPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSRELSAVARE 180

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           +  +   G  EV L+    GAYG D+    P L +A    L       LR+G       +
Sbjct: 181 MHLLTEAGFHEVVLTGIHLGAYGIDLAAR-PTLADACRTALGEAKLRRLRLGSLES---V 236

Query: 290 EHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           E   ++ E++R  P   + LH+P+Q+GSDAVL AMNR Y  + F  ++  +   VPG+ +
Sbjct: 237 ELSADLLELIRTEPRFAAHLHLPLQAGSDAVLRAMNRHYDTAAFAQLIADVRRAVPGVAV 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKKRS 407
           +TDII GFPGET+EDF   ++ ++   F ++H+  + PR GTPAA R  +VP AV K+R+
Sbjct: 297 STDIIVGFPGETEEDFAAGMDFVRAMGFARMHVFPYSPRRGTPAAQRADQVPPAVRKERA 356

Query: 408 RELTSVFE 415
             + ++ E
Sbjct: 357 ARMQALAE 364


>gi|21231765|ref|NP_637682.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66768109|ref|YP_242871.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|188991239|ref|YP_001903249.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
           campestris pv. campestris str. B100]
 gi|81305914|sp|Q4UVS2.1|MIAB_XANC8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|81793688|sp|Q8P8B5.1|MIAB_XANCP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|229891032|sp|B0RRW2.1|MIAB_XANCB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|21113472|gb|AAM41606.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573441|gb|AAY48851.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167732999|emb|CAP51197.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 485

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 134/403 (33%), Positives = 212/403 (52%), Gaps = 44/403 (10%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           +Y+KT GC  N+ DS  MA  L+A  G  LTDN E+AD+ L+NTC+++  +Q  + + + 
Sbjct: 39  LYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKAQEKVFSQLG 98

Query: 120 KCKSAK---KPLV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVE---ETLKG 168
           + K+ K   KP++  V GCV   +G   +K    V +V G Q + R+ E++    E+ K 
Sbjct: 99  RWKALKAGGKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARRESGKS 158

Query: 169 H------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
                  E+    R   P  D P    + FV I+    GC   C++C   + RG   S  
Sbjct: 159 QVDISFPEIEKFDRLPEPRADGP----SAFVSIME---GCSKYCSFCVVPYTRGEEVSRP 211

Query: 223 VESLVGRVRTVIADGVKEVWLSSEDT----GAYGRDIG-----VNLPILLNAIVAELPPD 273
            E ++  V  + A GV+E+ L  ++     GAYG D G      +L +L+  I A++  D
Sbjct: 212 FEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGEPAQYADLGLLIRTI-AQI--D 268

Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 332
           G   +R   ++P   LE    + +  R  P + ++LH+PVQ+GSD +LSAM R YT  +F
Sbjct: 269 GIGRIRFTTSHP---LEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTALEF 325

Query: 333 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392
           ++ +  L  + P + I++D I GFPGETD DF++T+ LI++  F Q     +  RPGTPA
Sbjct: 326 KSKIRKLRAVRPDISISSDFIVGFPGETDADFDKTMKLIEDVGFDQSFSFIYSRRPGTPA 385

Query: 393 ARMK-KVPSAVVKKRSRELTSVFEAFTPYLG--MEGRVERIWI 432
           + ++   P AV + R   L +   A    +   M G V+R+ +
Sbjct: 386 SDLEDDTPDAVKQARLARLQAHINAHAAGISQRMVGSVQRVLV 428


>gi|126700065|ref|YP_001088962.1| MiaB-like tRNA modifying enzyme [Clostridium difficile 630]
 gi|254976042|ref|ZP_05272514.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-66c26]
 gi|255093430|ref|ZP_05322908.1| putative radical SAM superfamily protein [Clostridium difficile CIP
           107932]
 gi|255101608|ref|ZP_05330585.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-63q42]
 gi|255307477|ref|ZP_05351648.1| putative radical SAM superfamily protein [Clostridium difficile
           ATCC 43255]
 gi|255315175|ref|ZP_05356758.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-76w55]
 gi|255517844|ref|ZP_05385520.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-97b34]
 gi|255650960|ref|ZP_05397862.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-37x79]
 gi|260684029|ref|YP_003215314.1| radical SAM protein [Clostridium difficile CD196]
 gi|260687689|ref|YP_003218823.1| radical SAM protein [Clostridium difficile R20291]
 gi|306520839|ref|ZP_07407186.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-32g58]
 gi|384361672|ref|YP_006199524.1| radical SAM protein [Clostridium difficile BI1]
 gi|423092477|ref|ZP_17080281.1| tRNA methylthiotransferase YqeV [Clostridium difficile 70-100-2010]
 gi|115251502|emb|CAJ69335.1| putative MiaB-like tRNA modifying enzyme [Clostridium difficile
           630]
 gi|260210192|emb|CBA64398.1| putative radical SAM superfamily protein [Clostridium difficile
           CD196]
 gi|260213706|emb|CBE05587.1| putative radical SAM superfamily protein [Clostridium difficile
           R20291]
 gi|357553979|gb|EHJ35715.1| tRNA methylthiotransferase YqeV [Clostridium difficile 70-100-2010]
          Length = 432

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/380 (31%), Positives = 192/380 (50%), Gaps = 29/380 (7%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  NQ ++E M       GY   ++ E AD+++INTCTV   S       I + K  
Sbjct: 8   TLGCKVNQYETEAMLELFEKDGYEQVNSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKK 67

Query: 125 KKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
               ++A  GC  Q S  ++ ++E V++V G     ++VE +++     +V  +      
Sbjct: 68  NPDAIIAVVGCYSQVSPEEILDIEEVNLVMGTNDRRKIVEEIKKINSSKKVSTVD----- 122

Query: 181 ALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
             D+ KV+  + +EI          + I  GC   CTYC   +ARG + S  ++S+V  V
Sbjct: 123 --DIMKVKAFEEIEISQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDIDSIVDEV 180

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           + +  +G KEV L+     +YG+D+      LL+ I      +    +R+    P    +
Sbjct: 181 KKLANNGYKEVVLTGIHVASYGKDLKDRDIKLLDVIKQINQIEKIERIRLSSVEPILFTD 240

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
               + EVL+   V    H+ +QSG D  L  MNR YT  +++T+VD L   +P + I T
Sbjct: 241 EF--VNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPDVAITT 298

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
           D+I GFPGET+E+F +T   +KE +  Q+HI ++ PR GTPAA M+ +V   +   RS +
Sbjct: 299 DVIVGFPGETNEEFKKTYEFLKEIELSQMHIFKYSPRKGTPAATMENQVDPQMKHFRSEQ 358

Query: 410 LTSV----FEAF-TPYLGME 424
           L ++    F  F T ++G E
Sbjct: 359 LLNLSKVNFNKFATKFIGRE 378


>gi|428220347|ref|YP_007104517.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Synechococcus sp. PCC 7502]
 gi|427993687|gb|AFY72382.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Synechococcus sp. PCC 7502]
          Length = 453

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 125/397 (31%), Positives = 196/397 (49%), Gaps = 29/397 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
           ++ T GC  N++DSE MAG L   GY+ TD ++EAD+ L NTC+++  ++  + + +   
Sbjct: 11  HIVTLGCQMNKADSERMAGILETMGYSSTDEADEADLVLYNTCSIRDNAEQKVYSYLGRQ 70

Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K K+    LVVAGCV Q  G   L+ +  + +V G Q ++R+  ++E+   G++V  
Sbjct: 71  AKRKHKNPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHVNRLDHLLEQVFNGNQVSA 130

Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
                +   D+   RRN  +   + I  GC  +CTYC     RG   S T ++++  V  
Sbjct: 131 TESAYIEE-DITTPRRNSSITAWVNIIYGCNESCTYCIVPRVRGVEQSRTPDAILQEVNN 189

Query: 233 VIADGVKEVWLSSEDTGAYGRDI-------GVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
           +   G KE+ L  ++  AYGRD+       GV   I L  ++  +   +G   +R   ++
Sbjct: 190 LSQQGYKEITLLGQNIDAYGRDLPPSNLGGGVGGKITLTDLLYYIHDVEGIERIRFATSH 249

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           P +    L +    L  P V    H+P QSG + +L AM R YT   +R ++D +  ++P
Sbjct: 250 PRYFSPRLIQACAEL--PKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDNIRAIMP 307

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
              I  D I  FPGET+  F  T+ L+ +  F  V+ + + PRPGTPAA      S  +K
Sbjct: 308 DASITADAIVAFPGETEAQFENTLRLVGDISFDLVNTAAYSPRPGTPAAIWTNQLSEEIK 367

Query: 405 -KRSRELTSVF-----EAFTPYLGMEGRVERIWITEI 435
             R + L  +      E    YL   GR E I I  I
Sbjct: 368 DDRLQRLNHLVNQKAAERSQRYL---GRTEEILIESI 401


>gi|443623627|ref|ZP_21108124.1| putative (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           [Streptomyces viridochromogenes Tue57]
 gi|443342870|gb|ELS57015.1| putative (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           [Streptomyces viridochromogenes Tue57]
          Length = 505

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/375 (31%), Positives = 191/375 (50%), Gaps = 16/375 (4%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQSAM 114
           G +T  ++T+GC  N  DSE ++G L   GY  A   +  +AD+ + NTC V+  + + +
Sbjct: 12  GVKTYEVRTYGCQMNVHDSERLSGLLEEAGYVRAPEGSDGDADVVVFNTCAVRENADNKL 71

Query: 115 DTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL 166
              +     K A++P   + V GC+ Q  RD  +K    V +V G   I ++  ++E   
Sbjct: 72  YGNLGHLAPKKARRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERAR 131

Query: 167 KGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
              + ++   + L A    LP  R + +   + I+VGC   CT+C     RG        
Sbjct: 132 VQEDAQVEIAEALEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPG 191

Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
            ++  V  ++A+GV E+ L  ++  AYG DIG +       + A    +G   +R    +
Sbjct: 192 DILAEVEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGRIEGLERVRFTSPH 250

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           P    + +  IA +   P V   LH+P+QSGSD VL AM R Y    +  +++ +   +P
Sbjct: 251 PRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRAAIP 308

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
              I TDII GFPGET+EDF QT+++++E +F Q    Q+  RPGTPAA M+ ++P  VV
Sbjct: 309 HAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAATMENQIPKEVV 368

Query: 404 KKRSRELTSVFEAFT 418
           + R   L ++ E  +
Sbjct: 369 QARYERLVALQEEIS 383


>gi|420187502|ref|ZP_14693522.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM039]
 gi|394255944|gb|EJE00880.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM039]
          Length = 514

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 188/365 (51%), Gaps = 16/365 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L+A GY+ T +  EAD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V +V G   I  + E++EE    K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G +E+ L  ++  +YG+DI   L   L  ++ ++       +R   ++P  
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  + +   +   +H+PVQSG++ VL  M R+YT   +  +V  + E +P + 
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEAIPNVA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T++L    +F   +   +  R GTPAA+MK  VP  V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDAVQFEHAYTYLYSQRDGTPAAKMKDNVPLEVKKER 425

Query: 407 SRELT 411
            + L 
Sbjct: 426 LQRLN 430


>gi|90420542|ref|ZP_01228449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335270|gb|EAS49023.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 483

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/385 (32%), Positives = 193/385 (50%), Gaps = 38/385 (9%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
           T  +++KT+GC  N  DS+ M   L+  GY  T+  E+AD+ L+NTC ++  +   + + 
Sbjct: 17  TRKVFIKTYGCQMNVYDSQRMGDALARDGYQPTEVIEDADLVLLNTCHIRERAAEKIYSE 76

Query: 118 IAKCKSAKKP---------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEET 165
           + + K  K           + VAGCV Q  G   +     V +V G Q   R+ E +   
Sbjct: 77  LGRIKLLKAEKAEQGVEMRVAVAGCVAQAEGQEIIDRAPVVDLVIGPQTYHRLPEALARV 136

Query: 166 LKGHEV---------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARG 216
            +G +V         +  H   LP +  P++R       L +  GC   CT+C   + RG
Sbjct: 137 ARGDKVVETDYAVEDKFRH---LPKVTAPQIRTRGVTAFLTVQEGCDKFCTFCVVPYTRG 193

Query: 217 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLNAIVAEL 270
              S  +  ++G  RT+ A GV+EV L  ++   +      GRDIG  L  LL A+ AE+
Sbjct: 194 SEVSRPLTQIMGEARTLAAAGVREVTLLGQNVNGWSGQDEAGRDIG--LGGLLRAL-AEI 250

Query: 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS 330
           P  G   LR   ++P  + + L  IA     P +  +LH+PVQSGSD +L AMNR +T +
Sbjct: 251 P--GFARLRYTTSHPRDMDDDL--IAAHRDLPALMPYLHLPVQSGSDRILKAMNRRHTGA 306

Query: 331 DFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390
           D+  ++D + +  P + ++ D I GFPGETD DF  T+ L+ E ++      ++  RPGT
Sbjct: 307 DYLRLLDRIRQARPDIALSGDFIVGFPGETDADFEDTMELVSEVRYASAFSFKYSARPGT 366

Query: 391 PAARMKK-VPSAVVKKRSRELTSVF 414
           P A M   V  AV  +R + L ++ 
Sbjct: 367 PGATMDDHVDEAVKSERLQRLQTLL 391


>gi|411120095|ref|ZP_11392471.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Oscillatoriales cyanobacterium JSC-12]
 gi|410710251|gb|EKQ67762.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Oscillatoriales cyanobacterium JSC-12]
          Length = 454

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 130/407 (31%), Positives = 206/407 (50%), Gaps = 35/407 (8%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+   D  E A++ L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEKMGFEWADEPENANLVLYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K+      LVVAGCV Q  G + L+ +  + +V G Q  +++  ++E+   G++V  
Sbjct: 69  AKRKQEQPDLTLVVAGCVAQQEGEKLLRRVPELDLVMGPQHANQLESLLEQVFNGNQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ K RR+  V    +NV  GC   CTYC   + RG   S T E++   + 
Sbjct: 129 TDPVHIME-DITKPRRDSAVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRSEME 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
            +   G KEV L  ++  AYGRD+      G +L  L + +  V ++P  G   +R   +
Sbjct: 187 ELGRQGYKEVTLLGQNIDAYGRDLPGVKVEGRHLHTLTDLLYFVHDVP--GIERIRFATS 244

Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
           +P +  E L +  AE+   P +    H+P QSG + VL AM R YT   +R ++D +   
Sbjct: 245 HPRYFTERLIRACAEL---PKLCEHFHIPFQSGDNEVLRAMGRGYTHERYRRIIDMIRSY 301

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
           +P   I+ D I GFPGET+  F  T+ L++E  F Q++ + + PRPGTPAA      S  
Sbjct: 302 IPDAAISGDAIVGFPGETEAQFENTLKLVEEVGFDQLNTAAYSPRPGTPAAVWDNQLSDE 361

Query: 403 VK----KRSRELTSV--FEAFTPYLGMEGRVERIWITEIAADGIHLV 443
           VK    +R   L ++   E    YL   GR+E + + +      H V
Sbjct: 362 VKSDRLQRLNHLVAIKAAERSQRYL---GRIEEVLVEDRNEKAPHQV 405


>gi|187477340|ref|YP_785364.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bordetella
           avium 197N]
 gi|123765978|sp|Q2KWE0.1|MIAB_BORA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|115421926|emb|CAJ48446.1| putative nucleic acid binding protein [Bordetella avium 197N]
          Length = 475

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 132/421 (31%), Positives = 213/421 (50%), Gaps = 35/421 (8%)

Query: 40  LHDNHLSKTGSLSPKIP-------GTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTD 91
           +H+  L + G+ +P  P       G+  IY++TFGC  N+ DS+ M   L    G  +TD
Sbjct: 1   MHETTLKREGASTPSNPTPSTHAAGSGKIYIRTFGCQMNEYDSDKMVDVLREDQGLEMTD 60

Query: 92  NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK-----PLVVAGCVP--QGSRDLKEL 144
           N EEAD+ L NTC+V+  +Q  + + + + +  KK      + V GCV   +G+  +K  
Sbjct: 61  NPEEADVILFNTCSVREKAQEKVFSDLGRVQHLKKLNPNLVIGVGGCVASQEGAAIVKRA 120

Query: 145 EGVSIV-GVQQIDRVVEVV----EETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPIN 199
             V +V G Q + R+ E++    +E +   ++     +K    ++P  R       + I 
Sbjct: 121 PYVDVVFGPQTLHRLPELIRRRRDEGVSQVDISFPEIEKFD--NMPPSRVEGATAFVSIM 178

Query: 200 VGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-----GRD 254
            GC   C++C   + RG   S   E ++  V  +   GV+EV L  ++  AY     G D
Sbjct: 179 EGCSKYCSFCVVPYTRGEEVSRPFEDVLTEVADLADQGVREVTLLGQNVNAYRGRIEGSD 238

Query: 255 IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQS 314
              +  +LL   V E+P  G   +R   ++P  + + + E     R P + SFLH+PVQ+
Sbjct: 239 EIADFAMLLE-YVHEIP--GIERIRYTTSHPKEMTQRMVEA--YARLPKLVSFLHLPVQA 293

Query: 315 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374
           GSD VL+AM R YT  +F++VV  L    P + +++D I GFPGET+EDF +T+ LI + 
Sbjct: 294 GSDRVLAAMKRGYTALEFKSVVRKLRAARPNLTLSSDFIVGFPGETEEDFQKTMKLIADV 353

Query: 375 KFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIW 431
            F       +  RPGTPAA ++   P  V  KR ++L ++   +A      M G  +R+ 
Sbjct: 354 GFDTSFSFVYSRRPGTPAADLQDDTPQDVKLKRLQQLQALINEQAAAIAQSMVGTRQRLL 413

Query: 432 I 432
           +
Sbjct: 414 V 414


>gi|441178473|ref|ZP_20970033.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           rimosus subsp. rimosus ATCC 10970]
 gi|440614511|gb|ELQ77777.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           rimosus subsp. rimosus ATCC 10970]
          Length = 487

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/368 (31%), Positives = 188/368 (51%), Gaps = 15/368 (4%)

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           M+T+GC  N  DSE ++G L   GY     ++E AD+ + NTC V+  + + +   + + 
Sbjct: 1   MRTYGCQMNVHDSERLSGLLEDAGYVPAPKDAEGADVVVFNTCAVRENADNRLYGNLGQL 60

Query: 122 --KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
             K A +P   + V GC+ Q  RD  +K+   V +V G   I ++  ++E      E ++
Sbjct: 61  APKKAARPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARVQEEAQV 120

Query: 174 LHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
              + L A    LP  R + +   + I+VGC   CT+C     RG         ++  + 
Sbjct: 121 EIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEIE 180

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
            ++ +GV E+ L  ++  AYG DIG +       + A    +G   +R    +P    + 
Sbjct: 181 ALVDEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERVRFTSPHPRDFTDD 239

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           +  IA +   P V   LH+P+QSGSD VL AM R Y    F  +++ +   +P   I+TD
Sbjct: 240 V--IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERFLGIIEKVRAAMPDAAISTD 297

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL 410
           II GFPGET+EDF QT++ ++E +F Q    Q+  RPGTPAA M+ ++P  VV+ R   L
Sbjct: 298 IIVGFPGETEEDFEQTLHTVRESRFAQAFTFQYSKRPGTPAAEMEGQIPKEVVQARYERL 357

Query: 411 TSVFEAFT 418
            ++ E  +
Sbjct: 358 VALQEEIS 365


>gi|158337776|ref|YP_001518952.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acaryochloris
           marina MBIC11017]
 gi|229890405|sp|B0C0E2.1|MIAB_ACAM1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|158308017|gb|ABW29634.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acaryochloris marina
           MBIC11017]
          Length = 454

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 122/361 (33%), Positives = 192/361 (53%), Gaps = 24/361 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI--- 118
           ++ T+GC  N++DSE MAG L   GY  ++N ++A++ L NTCT++  ++  + + +   
Sbjct: 9   HITTYGCQMNKADSERMAGVLENMGYQWSENPDDANLILCNTCTIRDNAEHKVYSYLGRQ 68

Query: 119 AKCKSAKK--PLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
           AK K A+    LVVAGCV Q   D  L+ +  + +V G Q  +R+ +++E+   G +V L
Sbjct: 69  AKRKHAQPDLTLVVAGCVAQQEGDALLRRVPELDLVMGPQHANRLQDLLEQVASGQQV-L 127

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                    D+ K RR+  V    +NV  GC   CTYC   + RG   S T E++   + 
Sbjct: 128 ATEPIHIVEDITKPRRDSAVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMV 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
            +   G KEV L  ++  AYGRD+      G +   L + +  V ++P  G   +R   +
Sbjct: 187 QLGEQGFKEVTLLGQNIDAYGRDLPGTTSEGRHQHTLTDLLYFVHDVP--GIERIRFATS 244

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           +P +  E L  I      P V    H+P QSG + VL AM+R YT   +R ++D +  ++
Sbjct: 245 HPRYFTERL--IQACYELPKVCEHFHIPFQSGDNDVLKAMSRGYTHEKYRRIIDNIRAIM 302

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
           P   I+ D I GFPGET+E F  T+ L+++ +F  ++ + + PRPGTPAA      S  V
Sbjct: 303 PDASISADAIVGFPGETEEQFMNTMQLVEDIEFDLLNTAAYSPRPGTPAALWDNQLSEEV 362

Query: 404 K 404
           K
Sbjct: 363 K 363


>gi|166367538|ref|YP_001659811.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Microcystis
           aeruginosa NIES-843]
 gi|425440422|ref|ZP_18820724.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcystis aeruginosa PCC 9717]
 gi|425463534|ref|ZP_18842864.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcystis aeruginosa PCC 9809]
 gi|229890619|sp|B0JVM6.1|MIAB_MICAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|166089911|dbj|BAG04619.1| tRNA-i(6)A37 modification enzyme [Microcystis aeruginosa NIES-843]
 gi|389719125|emb|CCH96984.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcystis aeruginosa PCC 9717]
 gi|389831547|emb|CCI25631.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcystis aeruginosa PCC 9809]
          Length = 446

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 123/396 (31%), Positives = 199/396 (50%), Gaps = 29/396 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  ++++ EAD+ L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
              K+      L+VAGCV Q  G + L+ +  V  I+G Q  +R+ +++++   G +V  
Sbjct: 69  AKRKQTQPDLTLIVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ K RR+  +    +NV  GC   CTYC     RG   S T  ++   + 
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
            +   G +E+ L  ++  AYGRD+      G +L    + +       G   LR   ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYVHDVAGIERLRFATSHP 246

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
            +  E L +  + L  P V    H+P QSG + +L AM R YT   +R ++  + +L+P 
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRDLMPD 304

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
             I+ D I GFPGET+  F  T+ L+ E  F Q++ + + PRPGTPAA      S  VK 
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDDQLSEQVKS 364

Query: 405 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEI 435
              +R   L  T   E    YL   GR+E I + ++
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDV 397


>gi|56751740|ref|YP_172441.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           elongatus PCC 6301]
 gi|81301183|ref|YP_401391.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           elongatus PCC 7942]
 gi|81561774|sp|Q5N199.1|MIAB_SYNP6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123755327|sp|Q31KL5.1|MIAB_SYNE7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|56686699|dbj|BAD79921.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81170064|gb|ABB58404.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus elongatus
           PCC 7942]
          Length = 452

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 189/361 (52%), Gaps = 22/361 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   GY  ++ + +AD+ L NTCT++  ++  + + + + 
Sbjct: 8   HITTFGCQMNKADSERMAGILEDLGYIWSEEANDADLVLYNTCTIRDNAEQKVYSYLGRQ 67

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K+      L+VAGCV Q  G   L+ +  + +V G Q  +R+ +++ +   G +V  
Sbjct: 68  AERKRQQPDLTLIVAGCVAQQEGESLLRRVPELDLVMGPQHANRLADLLAQVEAGSQVVA 127

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
               ++ A D+ + RR+  +    +NV  GC   CTYC   + RG   S    ++   + 
Sbjct: 128 TEEVEI-AEDITQPRRDSTITAW-VNVIYGCNERCTYCVVPNVRGREQSREPAAIRAEIE 185

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
            + A G +E+ L  ++  AYGRD+      G +L  L + +       G   +R   ++P
Sbjct: 186 QLAAQGYREITLLGQNIDAYGRDLPGSTPEGRHLHTLTDLLYTIHDVPGIERIRFATSHP 245

Query: 286 PFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
            +  E L +  AE+   P V  + H+P QSG + VL AM R YT+  +  +V+ + +++P
Sbjct: 246 RYFTERLIRACAEL---PKVCEYFHIPFQSGDNDVLKAMARGYTVERYLRIVEQIRDIIP 302

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
              I+ D I  FPGET+E F  T+ L+++  F  V+ + + PRPGTPAA      S  VK
Sbjct: 303 DAAISADAIVAFPGETEEQFENTLKLVEQVGFDLVNTAAYSPRPGTPAANAPNQLSEEVK 362

Query: 405 K 405
           +
Sbjct: 363 Q 363


>gi|218248044|ref|YP_002373415.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
           PCC 8801]
 gi|229890509|sp|B7JZ48.1|MIAB_CYAP8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|218168522|gb|ACK67259.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 8801]
          Length = 451

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 111/359 (30%), Positives = 187/359 (52%), Gaps = 20/359 (5%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  +++  +AD+ L NTCT++  ++  + + + + 
Sbjct: 14  HITTFGCQMNKADSERMAGILENMGFIWSEDPNQADLILYNTCTIRDNAEQKVYSYLGRQ 73

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K       L+VAGCV Q  G + L+ +  + +V G Q  +R+ +++++   G++V  
Sbjct: 74  AKRKHENPDLTLIVAGCVAQQEGEQILRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVA 133

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ K RR+  +    +NV  GC   C+YC   + RG   S T E+++  + 
Sbjct: 134 TEPIHIIE-DITKPRRDSTITAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAILAEME 191

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
            +   G KEV L  ++  AYGRD+      G +   L + +       G   +R   ++P
Sbjct: 192 LLGKQGYKEVTLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYTVHDVVGIERIRFATSHP 251

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
            +  E L    + L   C +   H+P QSG + +L AM R YT   +R ++D + + +P 
Sbjct: 252 RYFTERLIAACQELSKVCEH--FHIPFQSGDNDILKAMKRGYTHEKYRQIIDKIRDYMPD 309

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
             I+ D I GFPGET+E F  T+ L+++  F Q++ + + PRPGTPAA      S  VK
Sbjct: 310 ASISADAIVGFPGETEEQFENTLKLVEDIGFDQLNTAAYSPRPGTPAALWDNQLSEEVK 368


>gi|182418337|ref|ZP_02949632.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237666343|ref|ZP_04526328.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182377719|gb|EDT75263.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237657542|gb|EEP55097.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 466

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 189/370 (51%), Gaps = 16/370 (4%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
           G + +   T GC  N  ++E MA +    GY +TD S  AD++++NTC+V + S      
Sbjct: 31  GKQYVAFSTLGCRVNHYETEAMAEKFIREGYEITDFSNFADVYVVNTCSVTNMSDKKSRQ 90

Query: 117 LIAKCKSAKKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
           +I++ +   +  ++A  GC  Q S  ++ ++EGV +V G +    +V  V +     E +
Sbjct: 91  IISRARRINENAIIAAVGCYSQVSPEEVAKIEGVDVVLGTRNKGDIVYYVNKAKDEKESQ 150

Query: 173 L-----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           +     L  K+   L++ + + +K    L I  GC   C YC   + RG + S   E ++
Sbjct: 151 IVVGEVLRNKEFEDLNIEEYQ-DKTRAFLKIQDGCNRFCAYCLIPYTRGAVCSKDPEKVI 209

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 286
             ++ +   G KE+ LS   T +YG D+  ++ ++   I+ E+   DG   +RIG   P 
Sbjct: 210 SEIKKLAEHGFKEIILSGIHTASYGVDLEGDVSLM--TILEEIEKVDGIERVRIGSIEPC 267

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
           F  + + E  + ++  C     H+ +QSG DA L  MNR YT  ++   V  + + +   
Sbjct: 268 FFTDSVIEKMKSMKKLC--PQFHLSLQSGCDATLKRMNRRYTAKEYEEAVYKIRKNLKDA 325

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 405
            I TD+I GFPGETDE+FN T   +K  K  + HI +F PR GT AA M  ++   + +K
Sbjct: 326 SITTDVIVGFPGETDEEFNLTYEYLKNLKLTKTHIFKFSPRKGTKAATMDNQIDGTIKEK 385

Query: 406 RSRELTSVFE 415
           RS+ L  + E
Sbjct: 386 RSKALIDLNE 395


>gi|23099083|ref|NP_692549.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Oceanobacillus
           iheyensis HTE831]
 gi|81746368|sp|Q8EQR4.1|MIAB_OCEIH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|22777311|dbj|BAC13584.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 519

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/377 (32%), Positives = 194/377 (51%), Gaps = 24/377 (6%)

Query: 54  KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
           KI   +   ++T+GC  N+ D+E MAG LS  GY  T  +EEADI L+NTC ++  +++ 
Sbjct: 71  KIGHGKKFLIRTYGCQMNEHDTEVMAGILSEMGYESTTVTEEADIILLNTCAIRENAENK 130

Query: 114 MDTLIAKCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVE 163
           +   I   K  K       + V GC+ Q      R L++ + + ++ G   I R+  +V+
Sbjct: 131 VFGEIGHLKPLKLENPDLIIGVCGCMSQEESVVDRILQKHQHIDLIFGTHNIHRLPHLVK 190

Query: 164 ETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
           E L G E  V +  ++     +LPK R+ K    + I  GC   CTYC     RG   S 
Sbjct: 191 EALFGKEMIVEVWSKEGDIIENLPKARKGKIKAWVNIMYGCDKFCTYCIVPMTRGKERSR 250

Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD---IGVNLPILLNAIVA-ELPPDGSTM 277
             + ++  VR ++A G +EV L  ++  AYG+D   I   L  L+N I   ++P      
Sbjct: 251 RPKDIIQEVRHLVAQGYQEVTLLGQNVNAYGKDFEDIEYGLGDLMNDIHKIDIP-----R 305

Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
           +R   ++P    + L E+  + +   +   +H+PVQSGS  +L  MNR+YT  ++  +V 
Sbjct: 306 VRFTTSHPRDFDDRLIEV--LAQGGNLLDHIHLPVQSGSSEILKKMNRKYTREEYLELVR 363

Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK- 396
            +   +P   + TDII GFP ET+E F +T+ L++E  F   +   + PR GTPAAR K 
Sbjct: 364 KIRIAMPNATLTTDIIVGFPNETEEQFEETMTLVEEVGFEAAYTFIYSPREGTPAARKKD 423

Query: 397 KVPSAVVKKRSRELTSV 413
            VP  V K+R   L  +
Sbjct: 424 DVPEEVKKQRLYRLNEL 440


>gi|420169829|ref|ZP_14676407.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM070]
 gi|420206387|ref|ZP_14711897.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM008]
 gi|420209429|ref|ZP_14714866.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM003]
 gi|394243129|gb|EJD88503.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM070]
 gi|394278226|gb|EJE22543.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM008]
 gi|394278876|gb|EJE23188.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM003]
          Length = 514

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 188/365 (51%), Gaps = 16/365 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L+A GY+ T +  EAD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V +V G   I  + E++EE    K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G +E+ L  ++  +YG+DI   L   L  ++ ++       +R   ++P  
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + +  I  + +   +   +H+PVQSG++ VL  M R+YT   +  +V  + E +P + 
Sbjct: 308 FTDRM--IKVIAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEAIPNVA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T++L  + +F   +   +  R GTPAA+MK  VP  V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVPLEVKKER 425

Query: 407 SRELT 411
            + L 
Sbjct: 426 LQRLN 430


>gi|425453290|ref|ZP_18833048.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcystis aeruginosa PCC 9807]
 gi|389801446|emb|CCI19386.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcystis aeruginosa PCC 9807]
          Length = 446

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/396 (31%), Positives = 198/396 (50%), Gaps = 29/396 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  ++++ EAD+ L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
              K+      LVVAGCV Q  G + L+ +  V  I+G Q  +R+ +++++   G +V  
Sbjct: 69  AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ K RR+  +    +NV  GC   CTYC     RG   S T  ++   + 
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRSEME 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
            +   G +E+ L  ++  AYGRD+      G +L    + +       G   LR   ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
            +  E L +  + L  P V    H+P QSG + +L AM R YT   +R ++  +  L+P 
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRNLMPD 304

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
             I+ D I GFPGET+  F  T+ L+ E  F Q++ + + PRPGTPAA      S  VK 
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKS 364

Query: 405 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEI 435
              +R   L  T   E    YL   GR+E I + ++
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDV 397


>gi|166031818|ref|ZP_02234647.1| hypothetical protein DORFOR_01519 [Dorea formicigenerans ATCC
           27755]
 gi|166028271|gb|EDR47028.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dorea formicigenerans
           ATCC 27755]
          Length = 470

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 123/401 (30%), Positives = 198/401 (49%), Gaps = 23/401 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  + TFGC  N  DSE + G L   GY    + EEAD  + NTCTV+  + + +   + 
Sbjct: 36  TFCVTTFGCQMNARDSEKLRGILLEIGYEEA-SEEEADFVIFNTCTVRENANTRVYGRLG 94

Query: 120 KCKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGH 169
           + KS KK      + + GC+ Q    +++L         I G   I +  E++    +G 
Sbjct: 95  QLKSHKKKNPHMKIALCGCMMQEPEVVEKLRTSYRFVDLIFGTHNIYKFAELITAVYEGG 154

Query: 170 EVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            + +   K    +  DLP  R+  F   + I  GC   C+YC   + RG   S   E++V
Sbjct: 155 RMVIDIWKDTDKIVEDLPNDRKYSFKSGVNIMFGCNNFCSYCIVPYVRGRERSRKPEAIV 214

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNP 285
             +  ++ADGV EV L  ++  +YG+++   LP   LL  I      +G   +R   ++P
Sbjct: 215 REIERLVADGVTEVMLLGQNVNSYGKNLEEPLPFAELLQKIEQ---IEGLHRIRFMTSHP 271

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             + + L E+    +  C +  LH+PVQSGS  +L  MNR YT   +  +VD +   VP 
Sbjct: 272 KDLSDELIEVMGKSKKICKH--LHLPVQSGSSRILKKMNRHYTKEQYLELVDKIRAAVPD 329

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
           + + TDII GFPGET+EDF +T++++++ ++       +  R GTPAA M+ +VP  VVK
Sbjct: 330 ISLTTDIIVGFPGETEEDFLETLDIVRKVRYDSAFTFIYSKRTGTPAATMEDQVPEEVVK 389

Query: 405 KRSRELTSVFEAFTPYLGM--EGRVERIWITEIAADGIHLV 443
            R   L    +     +    EG V+ + +  ++    H+V
Sbjct: 390 DRFDRLLKEVQTIAAEVCAVHEGTVQEVLVESVSDHDDHMV 430


>gi|220932113|ref|YP_002509021.1| MiaB-like tRNA modifying protein [Halothermothrix orenii H 168]
 gi|219993423|gb|ACL70026.1| MiaB-like tRNA modifying enzyme [Halothermothrix orenii H 168]
          Length = 438

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 123/361 (34%), Positives = 190/361 (52%), Gaps = 14/361 (3%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E M G     GY + D  + AD+++IN+CTV + +      L  
Sbjct: 4   TVAFHTLGCKVNHYETEAMMGIFEEAGYKVVDFDDRADVYIINSCTVTNEAARKSRQLAR 63

Query: 120 KCKSAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKG-HEVRLL 174
           K +      VVA  GC  Q S D +K+++ + +V G  +   +V++VEE   G  EV  +
Sbjct: 64  KARRKNPEAVVALVGCYAQVSPDEVKKIDAIDLVLGSDRRKDIVKLVEEVRTGGKEVTDV 123

Query: 175 HR-KKLPA---LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
              KKL     L++ KV+      I  I  GC   C+YC   +ARG + S   ES++  V
Sbjct: 124 KDFKKLTTYEDLNINKVKETTRAYI-KIEEGCNQFCSYCIIPYARGPVRSRKEESVIQEV 182

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
             ++  GVKE+ L+    GAYG D   N   L+  I   +   G   +R+       + +
Sbjct: 183 ERLVRAGVKEIVLTGTHLGAYGLDEN-NDKALVELIQNLVKVKGLARIRLSSLEVTEVND 241

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
            L  I       C +  LH+P+QSGS+ +L  M R YT+ +F+  VD + +++  + I T
Sbjct: 242 DLIRIMGSEDKVCPH--LHLPLQSGSNTILKKMKRPYTVEEFKETVDKIRKIIEDIAITT 299

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
           DII GFPGE  ++FN++ N +KE  F ++H+  F  R GTPAARMK +VP  V K+ S++
Sbjct: 300 DIIVGFPGEGQKEFNESYNTVKELGFSRLHVFPFSIRQGTPAARMKNQVPGDVKKEYSKK 359

Query: 410 L 410
           +
Sbjct: 360 M 360


>gi|258645507|ref|ZP_05732976.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister invisus DSM
           15470]
 gi|260402861|gb|EEW96408.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister invisus DSM
           15470]
          Length = 478

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 203/384 (52%), Gaps = 24/384 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC  N+SD+E ++GQL   GY   D  ++AD+ ++NTC+++  ++  +   I + 
Sbjct: 43  FIETYGCQMNESDTERISGQLEELGYVPADILDDADVVILNTCSIRQNAEEKVYGKIGEV 102

Query: 122 KS--AKKP---LVVAGCVPQGSRDLKELEGVSIV----GVQQIDRVVEVVEET-LKGHEV 171
           K    KKP   L +AGC+ Q ++  K +E + ++    G   I  + ++V     +G  V
Sbjct: 103 KKLKGKKPGVLLGIAGCMAQENKG-KLIERMPVIDFVIGPYHIHDLKDIVSRRGAEGSHV 161

Query: 172 RLLHRKKLPALD---LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
            +         D   L  VR+++    +PI  GC   CTYC   + RG   S T++ +  
Sbjct: 162 VMTQMNPNRVNDYSELHSVRKSRIFAWVPIMQGCNKFCTYCIVPYVRGRETSRTIDDICR 221

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
            +  +  +G KE+ L  ++  +YG D   G +   L++AI      DG   +R   ++P 
Sbjct: 222 EIEKLAREGYKEITLLGQNVNSYGLDFHDGTDFGSLIHAID---KIDGIKRVRYMTSHPK 278

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
            +      +  +   P V   +H+PVQ G++ +L  MNR YT+  F+ ++  + E +PG+
Sbjct: 279 DMT--FGMVDAMAASPKVVRHMHLPVQHGANEILRRMNRGYTIERFKELLKYVREKMPGI 336

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 405
            + TD+I GFPGET++   +T+ L+KE KF   +   + PR GTPAARM  +V  AV  +
Sbjct: 337 TVTTDLITGFPGETEDMHEETLTLLKEMKFDSAYTFIYSPRRGTPAARMTNQVSDAVCHR 396

Query: 406 RSRELTSVFEAFTPYLG--MEGRV 427
           R +E+ +V    +  L   MEG+V
Sbjct: 397 RLQEIMNVENEISLSLNKEMEGKV 420


>gi|433654962|ref|YP_007298670.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Thermoanaerobacterium thermosaccharolyticum M0795]
 gi|433293151|gb|AGB18973.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Thermoanaerobacterium thermosaccharolyticum M0795]
          Length = 471

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 192/370 (51%), Gaps = 26/370 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           +++T+GC  N  DSE +AG L+  GY  TDN E+AD+ L NTC V+  ++  +   +++ 
Sbjct: 36  HIETYGCQMNVHDSEKLAGMLTEMGYTHTDNLEDADVILFNTCCVREHAEIRIFGRVSQL 95

Query: 122 KSAK--KP---LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVEETLKGHE- 170
           K  K  KP   L + GC+ Q    ++ ++     + IV G   + +  E+++E+L     
Sbjct: 96  KELKQRKPNIILGICGCMMQEKEVVEAIKNDYPYIDIVFGTHNLFKFPELLQESLNSDTT 155

Query: 171 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
            + +    K    D+P  R       + I  GC   CTYC   + RG   S     ++  
Sbjct: 156 IIDIWDDNKSIVEDIPIRRAEGLKAWVNIIYGCNNFCTYCIVPYVRGREKSREPHDILNE 215

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI-----GVNLPILLNAIVAELPPDGSTMLRIGMTN 284
           ++++  +G KE+ L  ++  +YG D+       +L  ++N I      DG   +R   ++
Sbjct: 216 IKSLANEGFKEITLLGQNVNSYGNDLPTKIDFADLLYMINDI------DGIERIRFMTSH 269

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           P  I + L      L   C +  LH+PVQSGS+ +L  MNR+Y+   +  +++ L + +P
Sbjct: 270 PKDISDKLIFAMRDLDKLCEH--LHLPVQSGSNKILERMNRKYSRERYLEIINKLRDNIP 327

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVV 403
           G+ I TDII GFPGETD+DF  T++L+KE ++   +   +  R GTPA +M  +V   + 
Sbjct: 328 GIAITTDIIVGFPGETDKDFQDTLDLVKEVRYDSAYTFIYSKRKGTPAEKMSNQVDEDIK 387

Query: 404 KKRSRELTSV 413
            KR  EL ++
Sbjct: 388 HKRLEELINL 397


>gi|292669800|ref|ZP_06603226.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia ATCC
           43541]
 gi|292648597|gb|EFF66569.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia ATCC
           43541]
          Length = 444

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 172/340 (50%), Gaps = 14/340 (4%)

Query: 66  FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
           +GC  N +D+E M GQL A GYA T+ +  ADI LINTC V+  ++  +   I + K  K
Sbjct: 17  YGCQMNIADAERMEGQLQAAGYARTEETANADIILINTCCVRETAEDKVYGKIGEVKKIK 76

Query: 126 KP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLH 175
           +        +AGC+ Q   D  ++    +  V G  ++  +  ++ E    H   V +  
Sbjct: 77  EKNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELTRIIAEIRAEHSPVVDVAL 136

Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
                A DLP  R  KF   +PI  GC   CTYC   + RG   S   E +V  VR  +A
Sbjct: 137 SDSEIAEDLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEVVAEVRRAVA 196

Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
           +G +EV L  ++  +YG+D        L  +V E+  +G   +R   ++P  I + L + 
Sbjct: 197 EGYREVTLLGQNVNSYGKDHKEADFADLLRMVDEV--EGIRRVRFMTSHPKDISDKLIDT 254

Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
            +   H C +  +H+PVQ GS  +L AMNR YT+  +R     + E +P   + TD+I G
Sbjct: 255 IKSGAHICEH--IHLPVQYGSSRLLKAMNRGYTVEKYRERALRVREALPEASLTTDLIVG 312

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395
           FPGET+EDF Q +  ++E ++   +   +  R GTPAA M
Sbjct: 313 FPGETEEDFAQMLAFLREMRYDSAYTFLYSKRSGTPAATM 352


>gi|229890676|sp|A0QIR4.2|MIAB_MYCA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 715

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 123/397 (30%), Positives = 198/397 (49%), Gaps = 29/397 (7%)

Query: 44  HLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYA-LTDNSEEADIWLIN 102
           H   T +++  + G  T  ++T+GC  N  DSE +AG L A GY    + +E AD+ + N
Sbjct: 14  HGPVTSTVARDVSGVRTYQVRTYGCQMNVHDSERLAGLLEAAGYRRAAEGAEVADVVVFN 73

Query: 103 TCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQ 154
           TC V+  + + +   ++     K+      + V GC+ Q  R+  L+    V +V G   
Sbjct: 74  TCAVRENADNKLYGNLSHLAPRKRSNPQMQIAVGGCLAQKDREAVLRRAPWVDVVFGTHN 133

Query: 155 IDRVVEVVEETL--KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTK 212
           I  +  ++E     K  +V +    +     LP  R + +   + I+VGC  +CT+C   
Sbjct: 134 IGSLPTLLERARHNKAAQVEIAEALQQFPSSLPSARESAYAAWVSISVGCNNSCTFCIVP 193

Query: 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG---------RDIGVNLPILL 263
             RG     + + ++  VR+++ADGV EV L  ++  AYG         RD G     LL
Sbjct: 194 SLRGKEVDRSPDDILAEVRSLVADGVLEVTLLGQNVNAYGVSFADPALPRDRGA-FARLL 252

Query: 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSA 322
            A   E+  DG   +R    +P    E   ++ E +   P V   LH+P+QSGSD VL A
Sbjct: 253 RA-CGEI--DGLERVRFTSPHPA---EFTDDVIEAMAQTPNVCPALHMPLQSGSDRVLRA 306

Query: 323 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382
           M R Y    +  ++D +   +P   I TD+I GFPGET+EDF  T+++++  +F      
Sbjct: 307 MRRSYRAERYLGIIDRVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTF 366

Query: 383 QFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT 418
           Q+  RPGTPAA +  ++P AVV++R   L  + E+ +
Sbjct: 367 QYSKRPGTPAAELDGQIPKAVVQERYERLVELQESIS 403


>gi|225027640|ref|ZP_03716832.1| hypothetical protein EUBHAL_01899 [Eubacterium hallii DSM 3353]
 gi|224954954|gb|EEG36163.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eubacterium hallii DSM
           3353]
          Length = 483

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 128/393 (32%), Positives = 204/393 (51%), Gaps = 23/393 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T Y +TFGC  N  DSE + G L   GY   D +E+AD    NTCTV+  +   +   + 
Sbjct: 46  TFYDQTFGCQMNFKDSEKLNGILEDIGYVKAD-TEKADFVYYNTCTVRENANVRVYGRLG 104

Query: 120 KCKSAKKP---LVVA--GCVPQGSRDLKELEGV-----SIVGVQQIDRVVEVVEETLKGH 169
             K+ KK    +V+A  GC+ Q   + ++++        + G   I ++ E++ E L G 
Sbjct: 105 ALKNYKKKNPEMVIAMCGCMMQEPEEQEKVKTTFKFVDVVFGTHNIFKLAELLYECLSGR 164

Query: 170 EVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           +      +K   +  DLP  R+  F   + I  GC   C+YC   + RG   S   E +V
Sbjct: 165 KRVFDVWEKTDQIIEDLPSDRKFGFKAGVNIMFGCNNFCSYCIVPYVRGRERSRKPEDIV 224

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNP 285
             V+ + ++GV EV L  ++  +YG+++   ++   LL  +V E+  +G   +R   ++P
Sbjct: 225 AEVKKLASEGVVEVMLLGQNVNSYGKNLENPISFAKLL-TMVEEV--EGIERIRFMTSHP 281

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             + + L E+    +  C +  LH+PVQSGS  +L  MNR+YT   +  +VD +   VP 
Sbjct: 282 KDLSDELIEVMAHSKKICKH--LHLPVQSGSSRILKLMNRKYTKEHYLELVDKIRTAVPD 339

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
           + I TDII GFPGET+EDF +T++++++ K+       +  R GTPAA+M  +VP  VV 
Sbjct: 340 IAITTDIIVGFPGETEEDFQETLDVVRKAKYDSAFTFIYSKRSGTPAAKMPDQVPDDVVH 399

Query: 405 KR-SRELTSVFEAFTPYLG-MEGRVERIWITEI 435
           +R  R L  V EA     G + G  E + + EI
Sbjct: 400 ERFDRLLKVVNEAAKEQNGKLTGNTELVLVEEI 432


>gi|392961815|ref|ZP_10327269.1| RNA modification enzyme, MiaB family [Pelosinus fermentans DSM
           17108]
 gi|421055727|ref|ZP_15518689.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B4]
 gi|421059013|ref|ZP_15521645.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B3]
 gi|421067117|ref|ZP_15528631.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A12]
 gi|421072487|ref|ZP_15533596.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A11]
 gi|392439492|gb|EIW17203.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B4]
 gi|392445687|gb|EIW22998.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A11]
 gi|392450855|gb|EIW27864.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A12]
 gi|392453382|gb|EIW30263.1| RNA modification enzyme, MiaB family [Pelosinus fermentans DSM
           17108]
 gi|392459694|gb|EIW36079.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B3]
          Length = 435

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/364 (32%), Positives = 189/364 (51%), Gaps = 20/364 (5%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC--K 122
           T GC  NQ ++E M G     GY +    + AD+++INTC+V    +     +I +    
Sbjct: 8   TLGCKVNQFETEIMEGLFKQRGYEMVPFDQVADVYVINTCSVTHLGEKKSRQIIRRAIRL 67

Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEE--------TLKGHEVR 172
           + K  + VAGC  Q S ++++ +EGV  IVG Q   R+V++VE+         +  + ++
Sbjct: 68  NPKAIVAVAGCYAQVSPQEIEAIEGVKVIVGTQDRQRIVDLVEQAAHCMSPVNIVTNIMK 127

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
             + + +P  D P   R      L I  GC   CTYC   +ARG L S  + S++     
Sbjct: 128 AEYFEDIPLFDAPGRTR----AFLKIQEGCTNFCTYCIIPYARGPLRSRPLSSIIQETEK 183

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
           +IA G KE+ L+    GAYGRD+   +  L + + A L   G   LR+G      I + L
Sbjct: 184 LIAAGFKEIVLTGIHLGAYGRDMEDEIT-LADVVRAILKIQGLVRLRLGSLESIEISDEL 242

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
             IA + +   + S LH+P+Q+G   VL AMNR YTL +++ ++  +   V  + I+TDI
Sbjct: 243 --IALMKQDDRLCSHLHLPLQAGDATVLKAMNRHYTLGEYQQLIANIRNKVEDIAISTDI 300

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELT 411
           I GFPGET E FN  +  +++  F ++HI  +  R GTPAA    ++P    ++R + + 
Sbjct: 301 IVGFPGETPEMFNNALAFVEKMNFSRMHIFPYSRRSGTPAAEYSGQIPEEEKRRRVQIMQ 360

Query: 412 SVFE 415
            + E
Sbjct: 361 ELAE 364


>gi|172040556|ref|YP_001800270.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Corynebacterium urealyticum DSM 7109]
 gi|448823534|ref|YP_007416699.1| 2-methylthioadenine synthetase [Corynebacterium urealyticum DSM
           7111]
 gi|229890501|sp|B1VDD8.1|MIAB_CORU7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|171851860|emb|CAQ04836.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
 gi|448277031|gb|AGE36455.1| 2-methylthioadenine synthetase [Corynebacterium urealyticum DSM
           7111]
          Length = 540

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 195/393 (49%), Gaps = 22/393 (5%)

Query: 41  HDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWL 100
           H  H  K  +   + P   T  ++TFGC  N  DSE ++G L   GY    N EE D+ +
Sbjct: 23  HVTHAMKKKTSVSEQPEQRTYEVRTFGCQMNVHDSERLSGLLEDSGYQPAANGEEPDVLV 82

Query: 101 INTCTVKSPSQSAMDTLIAKCKSAKK-----PLVVAGCVPQGSRD--LKELEGVSIV-GV 152
            NTC V+  + + +   +A  K  K       + V GC+ Q  +D  +     V +V G 
Sbjct: 83  FNTCAVRENADNRLYGTLAMVKPMKDRNPGMQIAVGGCMAQKDKDAVVDRAPWVDVVFGT 142

Query: 153 QQIDRVVEVVEETLKGH--EVRLLHR-KKLPALDLPKVRRNKFVEILPINVGCLGACTYC 209
             I  +  ++E +      EV +L   ++ P++ LP  R + +   + ++VGC   CT+C
Sbjct: 143 HNIGSLPTLLERSAHNQRAEVEILDSLEEFPSV-LPAKRESAYSGWVSVSVGCNNTCTFC 201

Query: 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 268
                RG         ++  V+ ++  GV+EV L  ++  AYG +    +LP    A   
Sbjct: 202 IVPSLRGKEQDRRPGEILAEVQALVDQGVQEVTLLGQNVNAYGVNFADEDLPRDRGAFAK 261

Query: 269 ELPPDGST--MLRIGMTNP---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM 323
            L   G    + R+  T+P    F  + +  +AE    P V   LH+P+QSGSD +L  M
Sbjct: 262 LLRACGEIEGLERLRFTSPHPAEFTDDVIDAMAET---PNVCPQLHMPLQSGSDRILKEM 318

Query: 324 NREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383
            R Y    F  ++D + E +P   I TDII GFPGET+EDF  T++++++ +F      Q
Sbjct: 319 RRSYRSKKFLGILDKVRERIPHAAITTDIIVGFPGETEEDFQATLDVVEKARFSCAFTFQ 378

Query: 384 FYPRPGTPAARM-KKVPSAVVKKRSRELTSVFE 415
           + PRPGTPAA M  ++P AVV++R   L ++ E
Sbjct: 379 YSPRPGTPAATMPDQIPKAVVQERYERLIALQE 411


>gi|425459253|ref|ZP_18838739.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcystis aeruginosa PCC 9808]
 gi|389823075|emb|CCI29007.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Microcystis aeruginosa PCC 9808]
          Length = 446

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/396 (31%), Positives = 198/396 (50%), Gaps = 29/396 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  ++++ EAD+ L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
              K+      LVVAGCV Q  G + L+ +  V  I+G Q  +R+ +++++   G +V  
Sbjct: 69  AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ K RR+  +    +NV  GC   CTYC     RG   S T  ++   + 
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
            +   G +E+ L  ++  AYGRD+      G +L    + +       G   LR   ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYVHDVAGIERLRFATSHP 246

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
            +  E L +  + L  P V    H+P QSG + +L AM R YT   +R ++  +  L+P 
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRNLMPD 304

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
             I+ D I GFPGET+  F  T+ L+ E  F Q++ + + PRPGTPAA      S  VK 
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAVWDDQLSEQVKS 364

Query: 405 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEI 435
              +R   L  T   E    YL   GR+E I + ++
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDV 397


>gi|420185401|ref|ZP_14691493.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM040]
 gi|394254387|gb|EJD99356.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
           epidermidis NIHLM040]
          Length = 514

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 187/365 (51%), Gaps = 16/365 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  D+E MAG L+A GY  T +  EAD+ LINTC ++  +++ + + I 
Sbjct: 69  TFLIKTYGCQMNAHDTEVMAGILNALGYNATSDINEADVILINTCAIRENAENKVFSEIG 128

Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
             K  KK      + V GC+ Q     ++ LK  + V +V G   I  + E++EE    K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +  ++     +LPKVR       + I  GC   CTYC     RG   S   E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR +  +G +E+ L  ++  +YG+DI   L   L  ++ ++       +R   ++P  
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRIRFTTSHPWD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + + E+  + +   +   +H+PVQSG++ VL  M R+YT   +  +V  + E +P + 
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEAIPNVA 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TDII G+P ET+E F +T++L    +F   +   +  R GTPAA+MK  VP  V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDNVQFEHAYTYLYSQRDGTPAAKMKDNVPLEVKKER 425

Query: 407 SRELT 411
            + L 
Sbjct: 426 LQRLN 430


>gi|429196007|ref|ZP_19187998.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Streptomyces ipomoeae
           91-03]
 gi|428668271|gb|EKX67303.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Streptomyces ipomoeae
           91-03]
          Length = 509

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/386 (30%), Positives = 194/386 (50%), Gaps = 16/386 (4%)

Query: 46  SKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINT 103
           S   SL+  +   ++  ++T+GC  N  DSE ++G L   GY  A      +AD+ + NT
Sbjct: 4   SSDRSLAVDVQAPKSYEIRTYGCQMNVHDSERLSGLLEEAGYVRAPEGADGDADVVVFNT 63

Query: 104 CTVKSPSQSAMDTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQI 155
           C V+  + + +   + +   K A +P   + V GC+ Q  RD  +K+   V +V G   I
Sbjct: 64  CAVRENADNRLYGNLGRLAPKKASRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNI 123

Query: 156 DRVVEVVEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKH 213
            ++  ++E      E ++   + L A    LP  R + +   + I+VGC   CT+C    
Sbjct: 124 GKLPVLLERARVQDEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPA 183

Query: 214 ARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273
            RG         ++  +  ++ +GV E+ L  ++  AYG DIG +       + A    +
Sbjct: 184 LRGKEKDRRTGDILAEIEALVGEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIE 242

Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 333
           G   +R    +P    + +  IA +   P V   LH+P+QSGSD VL AM R Y    + 
Sbjct: 243 GLERVRFTSPHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYL 300

Query: 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393
            +++ +   +P   I TDII GFPGET+EDF QT+++++E +F Q    Q+  RPGTPAA
Sbjct: 301 GIIEKVRAAIPHAAITTDIIVGFPGETEEDFEQTMHVVREARFAQAFTFQYSKRPGTPAA 360

Query: 394 RMK-KVPSAVVKKRSRELTSVFEAFT 418
            M+ ++P  VV+ R   L ++ E  +
Sbjct: 361 TMENQIPKQVVQARYERLVALQEEIS 386


>gi|168187871|ref|ZP_02622506.1| conserved hypothetical protein [Clostridium botulinum C str.
           Eklund]
 gi|169294276|gb|EDS76409.1| conserved hypothetical protein [Clostridium botulinum C str.
           Eklund]
          Length = 433

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 192/363 (52%), Gaps = 18/363 (4%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  N  +SE MA +    GY + D  E AD++++NTCTV + S      ++++ K  
Sbjct: 7   TLGCRVNMYESEAMAEKFIKNGYEVVDFDEMADVYVVNTCTVTNMSDKKSRQMLSRAKRK 66

Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV----EETLKGHEVR-LLH 175
               V+A  GC  Q     +KE+  V ++ G +    +V  V    EE     EV  +L 
Sbjct: 67  NPNSVIAAVGCYTQIAPEKVKEIGDVDVILGTRNKGDIVYWVNRAKEEDKTIVEVNDVLK 126

Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
            KK   L++ + + +K    L I  GC   C+YC    ARG + S   + ++  V+ + A
Sbjct: 127 NKKFEELNIEEYQ-DKTRAFLKIQDGCNNFCSYCLIPFARGAVCSKNPKIVIDEVKKLAA 185

Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILE-HLK 293
            G KEV LS  D  +YG D+  +  +L   I+ E+   DG T +RIG   P F  E  ++
Sbjct: 186 HGFKEVILSGIDISSYGVDLEGDWNLL--NILKEIDKIDGITRVRIGSIGPEFFNEDRIR 243

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
           +I   L+  C +   H+ +QSG +  L  MNR+YT+ +F  V++ L + +  + I TDII
Sbjct: 244 QIGN-LKKLCPH--FHLSLQSGCNETLKRMNRKYTIEEFENVINLLRKYIKDISITTDII 300

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTS 412
            GFPGETD++F +T   +K  K  ++HI ++ PR GT A +M K+V   + ++RS+ L  
Sbjct: 301 VGFPGETDDEFKKTYEYLKRIKLSKMHIFKYSPRTGTRAEKMEKQVNGNIKEERSKALIK 360

Query: 413 VFE 415
           + E
Sbjct: 361 LNE 363


>gi|440778294|ref|ZP_20957060.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           avium subsp. paratuberculosis S5]
 gi|436721397|gb|ELP45532.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
           avium subsp. paratuberculosis S5]
          Length = 497

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 121/389 (31%), Positives = 195/389 (50%), Gaps = 27/389 (6%)

Query: 51  LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYA-LTDNSEEADIWLINTCTVKSP 109
           ++  + G  T  ++T+GC  N  DSE +AG L A GY    + +E AD+ + NTC V+  
Sbjct: 1   MARDVSGVRTYQVRTYGCQMNVHDSERLAGLLEAAGYRRAAEGAEVADVVVFNTCAVREN 60

Query: 110 SQSAMDTLIAKCKSAKK-----PLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEV 161
           + + +   ++     K+      + V GC+ Q  R+  L+    V +V G   I  +  +
Sbjct: 61  ADNKLYGNLSHLAPRKRGNPEMQIAVGGCLAQKDREAVLRRAPWVDVVFGTHNIGSLPTL 120

Query: 162 VEETL--KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
           +E     K  +V +    +     LP  R + +   + I+VGC  +CT+C     RG   
Sbjct: 121 LERARHNKAAQVEIAEALQQFPSSLPSARESAYAAWVSISVGCNNSCTFCIVPSLRGKEV 180

Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG---------RDIGVNLPILLNAIVAEL 270
             + + ++  VR+++ADGV EV L  ++  AYG         RD G     LL A   E+
Sbjct: 181 DRSPDDILAEVRSLVADGVLEVTLLGQNVNAYGVSFADPALPRDRGA-FARLLRA-CGEI 238

Query: 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS 330
             DG   +R    +P    + +  I  + + P V   LH+P+QSGSD VL AM R Y   
Sbjct: 239 --DGLERVRFTSPHPAEFTDDV--IEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAE 294

Query: 331 DFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390
            F  ++D +   +P   I TD+I GFPGET+EDF  T+++++  +F      Q+  RPGT
Sbjct: 295 RFLGIIDRVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGT 354

Query: 391 PAARMK-KVPSAVVKKRSRELTSVFEAFT 418
           PAA +  ++P AVV++R   L  + E+ +
Sbjct: 355 PAAELDGQIPKAVVQERYERLVELQESIS 383


>gi|78042734|ref|YP_360230.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|123576193|sp|Q3ACA4.1|MIAB_CARHZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|77994849|gb|ABB13748.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 440

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 114/389 (29%), Positives = 196/389 (50%), Gaps = 18/389 (4%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           ++ Y+ T GC  N  DSE +AG L + G+  +   + AD+ +INTC+V+  +++ + T I
Sbjct: 4   KSYYIITHGCQMNVHDSETIAGILESMGFVPSPEEKTADLIIINTCSVRETAENKVFTKI 63

Query: 119 AKCKSAKKP-----LVVAGCVPQGSRDLKEL-----EGVSIVGVQQIDRVVEVVEETLKG 168
            + K  K+      + V GC+PQ  +  K L         I G   +  + +++E   + 
Sbjct: 64  GELKKLKRENPDLVIGVGGCIPQQEKVAKRLLERFPHLDFIFGTHNLPELPKILERVFEK 123

Query: 169 HE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
           HE  + +   +      +P  R       + I  GC   CTYC   + RG   S   E +
Sbjct: 124 HERVLEVWQSEGQIVEGIPVKREPGVRAWVTIMYGCNNFCTYCIVPYVRGRERSRKKEDI 183

Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
           +  +R ++A+G +EV L  ++  +YG+D+    P+    +      DG   +R   ++P 
Sbjct: 184 LQEIRQLVAEGYREVTLLGQNVNSYGKDLK-GKPMFAELLADIEKIDGLWRVRFTTSHPR 242

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
            + + + E+    R  C +  LH+PVQ+GS+ +L AM+R YT   +  +V+ +   +P +
Sbjct: 243 DLTDDVIEVMASSRKICEH--LHLPVQAGSNKILKAMHRGYTREYYLNLVEKIRAKIPKV 300

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
              TDII GFPGET+EDF QT++L+++ ++       +  R GTPAA MK +VP  V  +
Sbjct: 301 SFTTDIIVGFPGETEEDFEQTLDLVRKVRYDSAFTFVYNKRTGTPAAEMKDQVPEEVKSR 360

Query: 406 RSRELTSVFEAFTPYLGM--EGRVERIWI 432
           R +EL  +    +  L    EG +  I +
Sbjct: 361 RIQELIELQNGISLELNKNEEGNIHEILV 389


>gi|189439139|ref|YP_001954220.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Bifidobacterium longum DJO10A]
 gi|227547646|ref|ZP_03977695.1| possible tRNA 2-methylthioadenine synthetase [Bifidobacterium
           longum subsp. longum ATCC 55813]
 gi|239621252|ref|ZP_04664283.1| RNA modification enzyme [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|312132572|ref|YP_003999911.1| miab [Bifidobacterium longum subsp. longum BBMN68]
 gi|229890432|sp|B3DQX6.1|MIAB_BIFLD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|189427574|gb|ACD97722.1| 2-methylthioadenine synthetase [Bifidobacterium longum DJO10A]
 gi|227211901|gb|EEI79797.1| possible tRNA 2-methylthioadenine synthetase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239515713|gb|EEQ55580.1| RNA modification enzyme [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|311773512|gb|ADQ03000.1| MiaB [Bifidobacterium longum subsp. longum BBMN68]
          Length = 484

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 195/397 (49%), Gaps = 27/397 (6%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTD--NSEEADIWLINTCTVKSPSQS 112
           G    ++ T GC  N  DSE +AG L A GY  A  D  N  + D+ ++NTC V+  +  
Sbjct: 27  GKGVFHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQINDNDLDLLVLNTCAVRENAAE 86

Query: 113 AMDTLIAKCKSAK--KP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVV 162
            M   I +    K  +P   + V GC+ Q  R  K++   +     + G + I+ + +++
Sbjct: 87  RMYGTIGRFNRVKLVRPNLQIAVGGCMAQLDR--KKIADTAPWVSAVFGTKNIEDLPKLL 144

Query: 163 EETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
           ++     + ++   ++L      LP  R ++    + I+VGC   CT+C     RG    
Sbjct: 145 DQNRATGKAQVQVTEQLRQFPSQLPAARASRISSWVAISVGCNNTCTFCIVPTTRGKEKD 204

Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTML 278
                ++  +R  +ADG KEV L  ++  ++G  IG       LL A       DG   +
Sbjct: 205 RRPGDILDEIRQCVADGAKEVTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERV 261

Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
           R    +P    + +  IA +   P +   LH P+QSGSD +L AM R Y  + F  ++  
Sbjct: 262 RFTSPHPAAFTDDV--IAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 319

Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 398
           +   +P  QI+TDII GFPGET+EDF QT++++++ +F       + PRPGTPAA M+++
Sbjct: 320 IRAAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAMEQI 379

Query: 399 PSAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWIT 433
           P  VV+ R   L ++ E  T       EGR   + IT
Sbjct: 380 PRDVVQDRFDRLVALQEQITEENLATFEGRDVEVMIT 416


>gi|90421992|ref|YP_530362.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Rhodopseudomonas palustris BisB18]
 gi|123395291|sp|Q21C43.1|MIAB_RHOPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|90104006|gb|ABD86043.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopseudomonas
           palustris BisB18]
          Length = 473

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 113/364 (31%), Positives = 190/364 (52%), Gaps = 25/364 (6%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +++K+FGC  N  D++ M   L+  G+  T N++EAD+ ++NTC ++  +   + + + +
Sbjct: 7   LHIKSFGCQMNVYDAQRMVDALAPEGFVETANADEADLVILNTCHIREKASEKVYSELGR 66

Query: 121 CKSAKKP---------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
            + AK           + VAGCV Q  G+  ++    V +V G Q    + +++ E  +G
Sbjct: 67  LRVAKDEAALQGRRMNIAVAGCVAQAEGAEIIRRQPAVDVVVGPQSYHHLPQLLAEAARG 126

Query: 169 H---EVRLLHRKKLPALDLPK---VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
               E       K   L  P+   +R       + +  GC   CT+C   + RG   S  
Sbjct: 127 GRALETEFPVDDKFGFLPPPQPDAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEVSRP 186

Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV---AELPPDGSTMLR 279
           V+ +V  VR +  +GV+E+ L  ++  AY  D     P  L A++   A++P  G   LR
Sbjct: 187 VDKIVEDVRRLADNGVREITLIGQNVNAYHGDGPDGRPWPLGALLHHLAKIP--GIVRLR 244

Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
              ++P  + + L +    L  P +  F+H+PVQSGSDA+L+AMNR+++  D+R +VD  
Sbjct: 245 YSTSHPRDVDQSLIDAHRDL--PALMPFVHLPVQSGSDAILAAMNRKHSADDYRRLVDRF 302

Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 399
               P +  ++D I GFPGETDEDF  T+ L+ +  +   +  ++ PRPGTPAA +++  
Sbjct: 303 RSANPAIAFSSDFIVGFPGETDEDFAATLALVTQIGYAGAYSFKYSPRPGTPAAELQETV 362

Query: 400 SAVV 403
           SA V
Sbjct: 363 SAAV 366


>gi|456064184|ref|YP_007503154.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [beta proteobacterium CB]
 gi|455441481|gb|AGG34419.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [beta proteobacterium CB]
          Length = 452

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 125/405 (30%), Positives = 207/405 (51%), Gaps = 32/405 (7%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           +Y+KTFGC  N+ DS  MA  L A  G  +TD  E+AD+ L+NTC+++  ++  + + + 
Sbjct: 4   LYIKTFGCQMNEYDSGKMADLLHADEGMVMTDTPEDADVVLLNTCSIREKAEDKVFSDLG 63

Query: 120 KCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLK-GHE 170
           + +  KK      + V GCV   +G + +     V +V G Q + R+ +++ +  + G  
Sbjct: 64  RLRELKKTKPNLLIGVGGCVASQEGQQIISRAPYVDVVFGPQTLHRLSDLIAQRRETGRS 123

Query: 171 VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
              +   ++   D LP  R+ +    + I  GC   C+YC   + RG   S   + ++  
Sbjct: 124 QVDISFPEIEKFDHLPASRQTRGSAYVSIMEGCSKYCSYCVVPYTRGEEVSRPFDDVLTE 183

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGMTNP 285
           V  +   GVKE+ L  ++  AY   +G +  I    LL   +AE+P         G+   
Sbjct: 184 VAGLATQGVKEIVLLGQNVNAYLGKMGGSEEIADFALLIEYIAEIP---------GVERI 234

Query: 286 PFILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
            F   H KE A+ L     + P + S LH+PVQ  SD+VLSAM R YT  ++++++  + 
Sbjct: 235 RFTTSHPKEFAQRLIDVYAKVPKLVSHLHLPVQHASDSVLSAMKRGYTALEYKSIIRKMR 294

Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVP 399
            + P + +++D I GFPGETDEDF + + +++E  F       F  RPGTPAA +    P
Sbjct: 295 AVRPDLTLSSDFIVGFPGETDEDFAKLLKMVEELNFDNSFCFIFSARPGTPAANLSDDTP 354

Query: 400 SAVVKKRSRELTSVFEAFTPYL--GMEGRVERIWITEIAADGIHL 442
             V  KR + L ++ E+    +   M G  ER+ +  +A DG++L
Sbjct: 355 YEVKLKRLQTLLALVESQANQISKNMLGNTERVLVEGLAKDGVNL 399


>gi|419855095|ref|ZP_14377863.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium longum
           subsp. longum 44B]
 gi|386416276|gb|EIJ30783.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium longum
           subsp. longum 44B]
          Length = 484

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 195/397 (49%), Gaps = 27/397 (6%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTD--NSEEADIWLINTCTVKSPSQS 112
           G    ++ T GC  N  DSE +AG L A GY  A  D  N  + D+ ++NTC V+  +  
Sbjct: 27  GKGVFHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQINDNDLDLLVLNTCAVRENAAE 86

Query: 113 AMDTLIAKCKSAK--KP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVV 162
            M   I +    K  +P   + V GC+ Q  R  K++   +     + G + I+ + +++
Sbjct: 87  RMYGTIGRFNRVKLVRPNLQIAVGGCMAQLDR--KKIADTAPWVSAVFGTKNIEDLPKLL 144

Query: 163 EETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
           ++     + ++   ++L      LP  R ++    + I+VGC   CT+C     RG    
Sbjct: 145 DQNRATGKAQVQVTEQLRQFPSQLPAARASRISSWVAISVGCNNTCTFCIVPTTRGKEKD 204

Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTML 278
                ++  +R  +ADG KEV L  ++  ++G  IG       LL A       DG   +
Sbjct: 205 RRPGDILDEIRQCVADGAKEVTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERV 261

Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
           R    +P    + +  IA +   P +   LH P+QSGSD +L AM R Y  + F  ++  
Sbjct: 262 RFTSPHPAAFTDDV--IAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 319

Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 398
           +   +P  QI+TDII GFPGET+EDF QT++++++ +F       + PRPGTPAA M+++
Sbjct: 320 IRAAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAMEQI 379

Query: 399 PSAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWIT 433
           P  VV+ R   L ++ E  T       EGR   + IT
Sbjct: 380 PRDVVQDRFDRLVALQEQITEENLATFEGRDVEVMIT 416


>gi|384201320|ref|YP_005587067.1| miab [Bifidobacterium longum subsp. longum KACC 91563]
 gi|338754327|gb|AEI97316.1| miab [Bifidobacterium longum subsp. longum KACC 91563]
          Length = 479

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 195/397 (49%), Gaps = 27/397 (6%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTD--NSEEADIWLINTCTVKSPSQS 112
           G    ++ T GC  N  DSE +AG L A GY  A  D  N  + D+ ++NTC V+  +  
Sbjct: 22  GKGVFHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQINDNDLDLLVLNTCAVRENAAE 81

Query: 113 AMDTLIAKCKSAK--KP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVV 162
            M   I +    K  +P   + V GC+ Q  R  K++   +     + G + I+ + +++
Sbjct: 82  RMYGTIGRFNRVKLVRPNLQIAVGGCMAQLDR--KKIADTAPWVSAVFGTKNIEDLPKLL 139

Query: 163 EETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
           ++     + ++   ++L      LP  R ++    + I+VGC   CT+C     RG    
Sbjct: 140 DQNRATGKAQVQVTEQLRQFPSQLPAARASRISSWVAISVGCNNTCTFCIVPTTRGKEKD 199

Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTML 278
                ++  +R  +ADG KEV L  ++  ++G  IG       LL A       DG   +
Sbjct: 200 RRPGDILDEIRQCVADGAKEVTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERV 256

Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
           R    +P    + +  IA +   P +   LH P+QSGSD +L AM R Y  + F  ++  
Sbjct: 257 RFTSPHPAAFTDDV--IAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 314

Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 398
           +   +P  QI+TDII GFPGET+EDF QT++++++ +F       + PRPGTPAA M+++
Sbjct: 315 IRAAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAMEQI 374

Query: 399 PSAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWIT 433
           P  VV+ R   L ++ E  T       EGR   + IT
Sbjct: 375 PRDVVQDRFDRLVALQEQITEENLATFEGRDVEVMIT 411


>gi|255994803|ref|ZP_05427938.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saphenum ATCC
           49989]
 gi|255993516|gb|EEU03605.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saphenum ATCC
           49989]
          Length = 484

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 123/383 (32%), Positives = 197/383 (51%), Gaps = 49/383 (12%)

Query: 62  YMK----TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
           YMK    T GC  NQ ++  +A + S+ GY +T  +++ DI +IN+C+V S ++  +   
Sbjct: 42  YMKVGFLTLGCKVNQYETRAVAEKFSSRGYEVTSGTKDVDIAIINSCSVTSMAEKKVRQA 101

Query: 118 IAKCKSAKKPLVVA--GCVPQ--GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
           I K +      V+A  GC PQ  G   LK L    I+G +    +VE VE+ LK   V  
Sbjct: 102 IRKMRRENPDSVIAVMGCYPQRDGGAALKSLGCNVIIGNESKLGIVEKVEKFLKEQSV-- 159

Query: 174 LHRKKLPALDLPKVRRNKFVE--------------ILPINVGCLGACTYCKTKHARGHLG 219
                   +D+  + R K  E               + I  GC   CTYC   H RG + 
Sbjct: 160 -------IIDVTDINRCKTFENIQATCDIDGRKRAYIKIQDGCDRYCTYCIIAHVRGQVR 212

Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD----IGVNLPILLNAIVAELPPDGS 275
           S  V+ +    + ++ DG +E+ L+  +T  YG D    IG ++  ++N I + +P  G 
Sbjct: 213 SKKVDDIYEEAKKLVEDGYREIVLTGINTALYGEDLHQGIGKSMVDVINKI-STIP--GD 269

Query: 276 TMLRIGMTNPPFI----LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSD 331
             +RIG   P  +    +  +K + ++ RH       H+ VQSGS+ VL+AM R YT  +
Sbjct: 270 FRIRIGSLEPTVVNKEYINLIKNLPKLCRHA------HLSVQSGSNDVLAAMGRNYTREE 323

Query: 332 FRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 391
           +  +VD L +      I+TDII GFPGE+++DF Q++ L+++  F +VHI ++  R GTP
Sbjct: 324 YIDIVDMLRDAHGNYGISTDIIVGFPGESEKDFEQSLMLVEKIPFTKVHIFRYSERAGTP 383

Query: 392 AARMKKVPSAVVK-KRSRELTSV 413
           AA  K +    +K +R +EL+++
Sbjct: 384 AAGFKNMIKEEIKTRRMKELSTI 406


>gi|291516737|emb|CBK70353.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium longum
           subsp. longum F8]
          Length = 484

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 195/397 (49%), Gaps = 27/397 (6%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTD--NSEEADIWLINTCTVKSPSQS 112
           G    ++ T GC  N  DSE +AG L A GY  A  D  N  + D+ ++NTC V+  +  
Sbjct: 27  GKGVFHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQINDNDLDLLVLNTCAVRENAAE 86

Query: 113 AMDTLIAKCKSAK--KP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVV 162
            M   I +    K  +P   + V GC+ Q  R  K++   +     + G + I+ + +++
Sbjct: 87  RMYGTIGRFNRVKLVRPNLQIAVGGCMAQLDR--KKIADTAPWVSAVFGTKNIEDLPKLL 144

Query: 163 EETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
           ++     + ++   ++L      LP  R ++    + I+VGC   CT+C     RG    
Sbjct: 145 DQNRATGKAQVQVTEQLRQFPSQLPAARASRISSWVAISVGCNNTCTFCIVPTTRGKEKD 204

Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTML 278
                ++  +R  +ADG KEV L  ++  ++G  IG       LL A       DG   +
Sbjct: 205 RRPGDILDEIRQCVADGAKEVTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERV 261

Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
           R    +P    + +  IA +   P +   LH P+QSGSD +L AM R Y  + F  ++  
Sbjct: 262 RFTSPHPAAFTDDV--IAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 319

Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 398
           +   +P  QI+TDII GFPGET+EDF QT++++++ +F       + PRPGTPAA M+++
Sbjct: 320 IRAAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAMEQI 379

Query: 399 PSAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWIT 433
           P  VV+ R   L ++ E  T       EGR   + IT
Sbjct: 380 PRDVVQDRFDRLVALQEQITEENLATFEGRDVEVMIT 416


>gi|317129126|ref|YP_004095408.1| tRNA-i(6)A37 thiotransferase protein MiaB [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474074|gb|ADU30677.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cellulosilyticus
           DSM 2522]
          Length = 516

 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 194/364 (53%), Gaps = 16/364 (4%)

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
           ++T+GC  N+ DSE MAG L   G+  T NS++AD+ L+NTC ++  +++ +   I   K
Sbjct: 77  IRTYGCQMNEHDSENMAGILLNMGFESTSNSDDADVILLNTCAIRENAENKVFGEIGHLK 136

Query: 123 SAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
           + K+      + V GC+ Q     +R L++ + V ++ G   I R+  +++  +   E  
Sbjct: 137 TMKRERPELIVGVCGCMSQEESVVNRILQKHQHVDLIFGTHNIHRLPTLLKNAIFNKEMV 196

Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           V +  ++     ++P+ R+ +    + I  GC   CTYC   + RG   S   E ++  V
Sbjct: 197 VEVWSKEGDIIENMPRARKGQIQGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIEEV 256

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           R +  +G KE+ L  ++  AYG+D+ V++   L  ++ E+       +R   ++P    +
Sbjct: 257 RHLARNGYKEITLLGQNVNAYGKDL-VDMDYGLGDLMDEIRKIDIPRVRFTTSHPKDFDD 315

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
           HL E+  + +   +   +H+PVQSG+  VL  M R+YT  ++ T+   + E +P     T
Sbjct: 316 HLIEV--LAKGGNLVEHIHLPVQSGNSDVLKLMARKYTREEYVTLAKKIKEAIPHASFTT 373

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
           DII GFP ETD  F  T++L++E ++   +   + PR GTPAA+M   +P  V K+R + 
Sbjct: 374 DIIVGFPNETDAQFEDTLSLVREMEYDSAYTYVYSPREGTPAAKMNDNIPMEVKKERLQR 433

Query: 410 LTSV 413
           L ++
Sbjct: 434 LNAL 437


>gi|359411010|ref|ZP_09203475.1| MiaB-like tRNA modifying enzyme [Clostridium sp. DL-VIII]
 gi|357169894|gb|EHI98068.1| MiaB-like tRNA modifying enzyme [Clostridium sp. DL-VIII]
          Length = 459

 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 186/362 (51%), Gaps = 16/362 (4%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  N  ++E MA +    GY +T     AD+++INTC+V + S      +I++ +  
Sbjct: 32  TLGCRVNHYETEAMAEKFIREGYEITQFENFADVYVINTCSVTNMSDKKSRQIISRARRR 91

Query: 125 KKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL-----LH 175
            K  ++A  GC  Q + D + ++EGV +V G +    +V  V +    H+ +L     L 
Sbjct: 92  NKEAIIAAVGCYSQVAPDEVSKIEGVDVVLGTRNKGDIVYYVNKAKDEHKPQLMVGEVLK 151

Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
            K+   L++ + + +K    L I  GC   C YC   + RG   S   + ++  ++ +  
Sbjct: 152 NKQFEELNIEEYQ-DKTRAFLKIQDGCNRFCAYCLIPYTRGTTCSKDPDKVLTEIKKLNE 210

Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 294
            G KE+ LS   T +YG D+  N+ ++   ++ E+   DG   +RIG   P F  + + E
Sbjct: 211 HGFKEIILSGIHTASYGVDLDGNVSLI--TLLEEIEKLDGIERVRIGSIEPSFFTDEVIE 268

Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
             + ++  C     H+ +QSG DA L  MNR YT  ++   V+ + E +    I TD+I 
Sbjct: 269 KIKNMKKLC--PQFHLSLQSGCDATLKRMNRRYTAKEYEDAVNRIRENLKDASITTDVIV 326

Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV 413
           GFPGETDE+FN+T   +K  K  + HI +F PR GT AA M  +V   V ++RS+ L  +
Sbjct: 327 GFPGETDEEFNETYEYLKRIKLTKTHIFKFSPRKGTKAADMSNQVDGNVKEQRSKALIEL 386

Query: 414 FE 415
            E
Sbjct: 387 NE 388


>gi|334126695|ref|ZP_08500644.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Centipeda periodontii DSM
           2778]
 gi|333391366|gb|EGK62484.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Centipeda periodontii DSM
           2778]
          Length = 433

 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 187/371 (50%), Gaps = 33/371 (8%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  NQ ++E M G   A GY +      AD+++INTC+V   S      LI +    
Sbjct: 7   TLGCKVNQFETETMEGLFRARGYEVVPFDAAADVYVINTCSVTHLSDRKSRQLIRRAART 66

Query: 125 KKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE---------- 170
                + V GC  Q    +++ L GV +V G ++  R+V+ VE +L+ +E          
Sbjct: 67  NPSACIAVTGCYAQVAPEEIRALAGVRVVIGTKERARIVDYVEASLRENEGIAGTITDIM 126

Query: 171 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
             R+   + +P   LP   R      L I  GC   CT+C   +ARG + S  + ++   
Sbjct: 127 QARVF--EDIPLHSLPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSRALSAVARE 180

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           +R +   G  EV L+    GAYG D+  + P L +A    L  +    LR+G       L
Sbjct: 181 MRLLTEAGFHEVVLTGIHLGAYGIDL-TDRPTLADACRTALAEEKLRRLRLGS------L 233

Query: 290 EHLKEIAEVL----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
           E ++  A++L      P   + LH+P+Q+GSD VL AMNR Y  + F  ++  +   VPG
Sbjct: 234 ESVELSADLLALMRTEPRFAAHLHLPLQAGSDNVLRAMNRHYDTAAFAQLIAEVRTAVPG 293

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVK 404
           + ++TDII GFPGET+EDF   +  ++   F ++H+  +  R GTPAA R  +VP AV K
Sbjct: 294 VALSTDIIVGFPGETEEDFATGMEFVRAMGFARMHVFPYSARKGTPAARRADQVPPAVRK 353

Query: 405 KRSRELTSVFE 415
           KR+  + ++ E
Sbjct: 354 KRAARMQALAE 364


>gi|294102364|ref|YP_003554222.1| MiaB family RNA modification protein [Aminobacterium colombiense
           DSM 12261]
 gi|293617344|gb|ADE57498.1| RNA modification enzyme, MiaB family [Aminobacterium colombiense
           DSM 12261]
          Length = 440

 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 124/399 (31%), Positives = 204/399 (51%), Gaps = 24/399 (6%)

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK-- 120
           +K +GC  N  D + +   L   G+  T + EEADI + N C++++ ++  + + + +  
Sbjct: 6   LKVYGCQMNVYDGDKLRTALIRNGWQET-SEEEADIVIFNGCSIRAKAEHKVWSELGRYG 64

Query: 121 --CKSAKKPLV-VAGCVPQ--GSRDLKELEGVSIVG-VQQIDRVVEVVEETLKGHEVRLL 174
                 KKP V V GC+ Q  GS  +     V +VG  + I  + E +E  + G  V LL
Sbjct: 65  ESWSDKKKPFVAVTGCIAQRLGSAMMTRFPWVRLVGGPRHIGDLPEALERVMAGERVSLL 124

Query: 175 HRKKLPALDL---PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                  +DL   P  R N +   + I  GC   CTYC   + RG   S   E ++  +R
Sbjct: 125 DEDSRAFVDLAVPPIERVNPWKAYVTIAHGCDNFCTYCIVPYVRGRFVSRFPEDILVEIR 184

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
            ++ DGVKE+ L  ++  +YG+D   G     LL  + A    DG  ++R   ++P    
Sbjct: 185 GLVEDGVKEITLLGQNVNSYGQDFKNGYTFSSLLRDVAA---IDGLPLIRFVTSHPK--- 238

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   +I EV+  HP +   +++P+QSGSD +L  MNR+YTL+ +R  V  +   +P + +
Sbjct: 239 DFTPDIVEVMAHHPKICPSINLPIQSGSDRILKKMNRKYTLAKYRETVSVIRNALPEVGL 298

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+EDF  +V  + E+++  VH + + PR GT A+ M+ ++   V  KR 
Sbjct: 299 TSDLIVGFPGETEEDFQASVAALHEFRYDLVHTAAYSPREGTAASTMEDQIDQDVKMKRL 358

Query: 408 RELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVR 444
             + +V    A     G+ G+  +I I + A  G  LV+
Sbjct: 359 NTVNAVQSEIALQINRGLVGKRYKILIDDWAPKGESLVQ 397


>gi|444352574|ref|YP_007388718.1| tRNA-i(6)A37 methylthiotransferase [Enterobacter aerogenes EA1509E]
 gi|443903404|emb|CCG31178.1| tRNA-i(6)A37 methylthiotransferase [Enterobacter aerogenes EA1509E]
          Length = 474

 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 194/367 (52%), Gaps = 25/367 (6%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
           T+ +++KT+GC  N+ DS  MA  L A  GY LT+ +EEAD+ L+NTC+++  +Q  +  
Sbjct: 2   TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFH 61

Query: 117 LIAKCK--SAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
            + + K    KKP V   V GCV   +G    +    V I+ G Q + R+ E+++     
Sbjct: 62  QLGRWKLLKEKKPGVIIGVGGCVASQEGKLIRQRAHYVDIIFGPQTLHRLPEMIDAVRNN 121

Query: 169 HE-VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
           H+ V  +   ++   D LP+ R       + I  GC   CTYC   + RG   S   + +
Sbjct: 122 HKPVIDVSFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPCDDI 181

Query: 227 VGRVRTVIADGVKEVWLSSEDTGA-----YGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
           +  +  + A GV+EV L  ++  A     Y    G N   LL  + A    DG   +R  
Sbjct: 182 LFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTG-NFADLLRLVAA---IDGIDRIRFT 237

Query: 282 MTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
            ++P   +E   +I EV R  P + SFLH+PVQ+GSD VL+ M R +T+ +++ ++  L 
Sbjct: 238 TSHP---IEFTDDIIEVYRDTPELVSFLHLPVQAGSDRVLNLMGRTHTVLEYKAIIRKLR 294

Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVP 399
           E  P +QI++D I GFPGET EDF +T+ LI E  F   +   F  RPGTPAA M   VP
Sbjct: 295 EARPDIQISSDFIVGFPGETTEDFEKTMKLIAEVNFDVSYSFIFSARPGTPAADMVDDVP 354

Query: 400 SAVVKKR 406
            A  K+R
Sbjct: 355 EADKKQR 361


>gi|312898000|ref|ZP_07757409.1| MiaB-like tRNA modifying enzyme [Megasphaera micronuciformis F0359]
 gi|310620925|gb|EFQ04476.1| MiaB-like tRNA modifying enzyme [Megasphaera micronuciformis F0359]
          Length = 438

 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 131/401 (32%), Positives = 203/401 (50%), Gaps = 39/401 (9%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI- 118
           TI   T GC  NQ D++ M G  +A GY   D S  AD+++INTC+V    +     +I 
Sbjct: 3   TIAFTTLGCRVNQYDTDSMRGLFAAAGYEEADFSGPADVYVINTCSVTHVGEKKSRQIIR 62

Query: 119 -AKCKSAKKPLVVAGCVPQGSRD-LKELEGV-SIVGVQQIDRVVEVVE---ETLKGHEVR 172
            AK  +A   ++V GC  Q S D L  + GV +++G  +   +V+VVE       G  VR
Sbjct: 63  RAKRNNADGLVIVTGCYAQLSPDVLSAIPGVDAVIGTNERKCIVQVVESLRNERSGRTVR 122

Query: 173 LLHRKKLPALDLPKVRRNKFVEI-------------LPINVGCLGACTYCKTKHARGHLG 219
            +H       D+  + R++F EI             L I  GC   C YC   + RG L 
Sbjct: 123 AVH-------DI--MGRDEFEEIPLYPSAVEHTRADLKIQEGCNNFCAYCIIPYTRGSLK 173

Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTM 277
           S   ++++   + + A G KE+ L+    GAYG D+     L ++L  ++AE        
Sbjct: 174 SRQPDAVIEEAKRLSAAGFKEIVLTGIHLGAYGMDLPDRPTLALVLKRLLAETDI---AR 230

Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
           +R+G      I + L E        C +  LH+P+QSGSD +L +M R YT  ++  +++
Sbjct: 231 IRMGSIESVEIGDDLVEAINSSSRICPH--LHLPMQSGSDEILKSMKRHYTKEEYILLIE 288

Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK 397
            L + +  + ++TD+I GFPGETDE F++T++ +K  KF  +H   + PR GTPAA+M+ 
Sbjct: 289 DLHKKIKDLTVSTDLILGFPGETDELFDETMDTLKRLKFSHIHAFPYSPREGTPAAQMEN 348

Query: 398 VPSAVVKKRSRELTSVF--EAFTPYL-GMEGRVERIWITEI 435
             S+ VKK+  E  +    E     L GM G+   + I E+
Sbjct: 349 QVSSDVKKKRVETVNALSKEQKEEILDGMIGKTVHVLIEEV 389


>gi|417003333|ref|ZP_11942396.1| tRNA methylthiotransferase YqeV [Anaerococcus prevotii
           ACS-065-V-Col13]
 gi|325478525|gb|EGC81637.1| tRNA methylthiotransferase YqeV [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 431

 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 188/363 (51%), Gaps = 14/363 (3%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  + T GC  NQ +SE +     A GY   +  E ADI++INTCTV + S      +I+
Sbjct: 4   TFNIITLGCKVNQYESEAVEEIFEARGYKKKE--ENADIYVINTCTVTNMSDRKSRQMIS 61

Query: 120 KCKSAKKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETL--KGHEVRL 173
           + +      V+A  GC  Q    ++ ++EGV IV G +  + VV++ E+ L  KG   ++
Sbjct: 62  RARRDNPEAVIAVMGCYSQVKPEEVSQIEGVDIVLGSRNKEEVVDLCEDVLQNKGAIDKV 121

Query: 174 LHRKKLPALDLPKVRRNKFV--EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
           L   +   ++  ++   + +    + I  GC   C+YC   +ARG++ S  +ES+    +
Sbjct: 122 LSLSETKTIEDLEISNQEAMTRAYMKIQDGCNMYCSYCLIPYARGNISSRDMESIKNEAK 181

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
            +  +G KE+ L+     +YG+D+  N   L++ I      DG   +R+    P  I   
Sbjct: 182 RLAENGYKEIVLTGIHVSSYGKDLK-NGTSLIDVIEEVANTDGIERIRLSSMEPRHITRE 240

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
             E  +  +  C     H+ +QSGSD +L AMNR+Y    F+  VD + E+ P   + TD
Sbjct: 241 FLERMKATKKAC--DHFHLSLQSGSDDILKAMNRKYDTKIFKEKVDLIREVFPNAGLTTD 298

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL 410
           II GFP ETDE+  +T N +K+ KF + H+ ++  R GT AA MK +V   + K+R +EL
Sbjct: 299 IIVGFPTETDENHIETKNFVKDIKFAKTHLFKYSKRDGTKAATMKPEVDGNIKKERLKEL 358

Query: 411 TSV 413
             +
Sbjct: 359 EEI 361


>gi|319649479|ref|ZP_08003635.1| YmcB protein [Bacillus sp. 2_A_57_CT2]
 gi|317398641|gb|EFV79323.1| YmcB protein [Bacillus sp. 2_A_57_CT2]
          Length = 515

 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 191/380 (50%), Gaps = 21/380 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG     GY  T++ E+A++ L+NTC ++  +++ +   +  
Sbjct: 71  FYIRTYGCQMNEHDTEVMAGIFLGLGYEHTESVEDANVILLNTCAIRENAENKVFGELGH 130

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K  KK      + V GC+ Q     ++ LK    V ++ G   I R+  +++E     E
Sbjct: 131 LKHLKKENPDLLIGVCGCMSQEESVVNKILKTYNQVDMIFGTHNIHRLPNILQEAYMSKE 190

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             + +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 191 MVIEVWSKEGDVIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A G +E+ L  ++  AYG+D   ++   L  ++ E+       +R   ++P   
Sbjct: 251 EVRQLAAQGYQEITLLGQNVNAYGKDFE-DMNYGLGDLMDEMRKIDIPRVRFTTSHPRDF 309

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS  VL  M R+YT   +  +V  +   +P    
Sbjct: 310 DDHLIEV--LAKGGNLVEHIHLPVQSGSTDVLKIMARKYTREQYLELVRKIKAAIPEATF 367

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
            TDII G+P ET+E F +T++L +E  F   +   + PR GTPAA+M   VP  V K+R 
Sbjct: 368 TTDIIVGYPNETEEQFEETISLYREVGFEAAYTFIYSPREGTPAAKMVDNVPMEVKKERL 427

Query: 408 RELTSVF-----EAFTPYLG 422
           + L +V      EA   Y G
Sbjct: 428 QRLNAVVNELSAEAMKKYKG 447


>gi|23465968|ref|NP_696571.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Bifidobacterium longum NCC2705]
 gi|317482468|ref|ZP_07941485.1| MiaB family RNA modification enzyme [Bifidobacterium sp.
           12_1_47BFAA]
 gi|419848312|ref|ZP_14371424.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium longum
           subsp. longum 1-6B]
 gi|419850112|ref|ZP_14373128.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium longum
           subsp. longum 35B]
 gi|419853914|ref|ZP_14376711.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium longum
           subsp. longum 2-2B]
 gi|81753721|sp|Q8G4H4.1|MIAB_BIFLO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|23326682|gb|AAN25207.1| widely conserved hypothetical protein in upf0004 [Bifidobacterium
           longum NCC2705]
 gi|316916128|gb|EFV37533.1| MiaB family RNA modification enzyme [Bifidobacterium sp.
           12_1_47BFAA]
 gi|386406345|gb|EIJ21359.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium longum
           subsp. longum 2-2B]
 gi|386408166|gb|EIJ23097.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium longum
           subsp. longum 1-6B]
 gi|386410167|gb|EIJ24969.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium longum
           subsp. longum 35B]
          Length = 480

 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 195/397 (49%), Gaps = 27/397 (6%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTD--NSEEADIWLINTCTVKSPSQS 112
           G    ++ T GC  N  DSE +AG L A GY  A  D  N  + D+ ++NTC V+  +  
Sbjct: 23  GKGVFHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQINDNDLDLLVLNTCAVRENAAE 82

Query: 113 AMDTLIAKCKSAK--KP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVV 162
            M   I +    K  +P   + V GC+ Q  R  K++   +     + G + I+ + +++
Sbjct: 83  RMYGTIGRFNRVKLVRPNLQIAVGGCMAQLDR--KKIADTAPWVSAVFGTKNIEDLPKLL 140

Query: 163 EETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
           ++     + ++   ++L      LP  R ++    + I+VGC   CT+C     RG    
Sbjct: 141 DQNRATGKAQVQVTEQLRQFPSQLPAARASRISSWVAISVGCNNTCTFCIVPTTRGKEKD 200

Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTML 278
                ++  +R  +ADG KEV L  ++  ++G  IG       LL A       DG   +
Sbjct: 201 RRPGDILDEIRQCVADGAKEVTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERV 257

Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
           R    +P    + +  IA +   P +   LH P+QSGSD +L AM R Y  + F  ++  
Sbjct: 258 RFTSPHPAAFTDDV--IAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 315

Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 398
           +   +P  QI+TDII GFPGET+EDF QT++++++ +F       + PRPGTPAA M+++
Sbjct: 316 IRAAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAMEQI 375

Query: 399 PSAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWIT 433
           P  VV+ R   L ++ E  T       EGR   + IT
Sbjct: 376 PRDVVQDRFDRLVALQEQITEENLATFEGRDVEVMIT 412


>gi|422343286|ref|ZP_16424214.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia F0398]
 gi|355378593|gb|EHG25773.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia F0398]
          Length = 437

 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 172/340 (50%), Gaps = 14/340 (4%)

Query: 66  FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
           +GC  N +D+E M GQL A GYA T+ +  ADI LINTC V+  ++  +   I + K  K
Sbjct: 10  YGCQMNIADAERMEGQLQAAGYARTEETANADIILINTCCVRETAEDKVYGKIGEVKKIK 69

Query: 126 KP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLH 175
           +        +AGC+ Q   D  ++    +  V G  ++  +  ++ E    H   V +  
Sbjct: 70  EKNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELTRIIAEIRAEHSPVVDVAL 129

Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
                A DLP  R  KF   +PI  GC   CTYC   + RG   S   E +V  VR  +A
Sbjct: 130 SDSEIAEDLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEVVAEVRRAVA 189

Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
           +G +EV L  ++  +YG+D        L  +V E+  +G   +R   ++P  I + L + 
Sbjct: 190 EGYREVTLLGQNVNSYGKDHKEADFADLLRMVDEV--EGIRRVRFMTSHPKDISDKLIDT 247

Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
            +   H C +  +H+PVQ GS  +L AMNR YT+  +R     + E +P   + TD+I G
Sbjct: 248 IKSGAHICEH--IHLPVQYGSSRLLKAMNRGYTVEKYRERALRVREALPEASLTTDLIVG 305

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395
           FPGET+EDF Q +  ++E ++   +   +  R GTPAA M
Sbjct: 306 FPGETEEDFAQMLAFLREMRYDSAYTFLYSKRSGTPAATM 345


>gi|336321139|ref|YP_004601107.1| RNA modification enzyme, MiaB family [[Cellvibrio] gilvus ATCC
           13127]
 gi|336104720|gb|AEI12539.1| RNA modification enzyme, MiaB family [[Cellvibrio] gilvus ATCC
           13127]
          Length = 518

 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 122/388 (31%), Positives = 190/388 (48%), Gaps = 24/388 (6%)

Query: 46  SKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD----NSEEADIWLI 101
           + T + +P+ P   T  +KT GC  N  DSE+MAG L A GY         +E+AD+ +I
Sbjct: 8   ASTTASTPQTP-RRTYLVKTLGCQMNVHDSEHMAGMLEAAGYVAASPEQAAAEDADVIVI 66

Query: 102 NTCTVKSPSQSAMDTLIAKCKSAKKP------LVVAGCVPQGSRD--LKELEGVSIV-GV 152
           NTC V+  +   +   + +    K+       + V GC+ Q  R   ++    V +V G 
Sbjct: 67  NTCAVRENAADKLYGNLGRLAGTKRSRPGGMQIAVGGCLAQKDRSGIVERAPWVDVVFGT 126

Query: 153 QQIDRVVEVVEETL--KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 210
             +D +  ++E        +V +    K+    LP  R + +   + I+VGC   CT+C 
Sbjct: 127 HNLDVLPALLERARHNAAAQVEIEESLKVFPSTLPTRRESAYAGWVSISVGCNNTCTFCI 186

Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVA 268
             H RG         ++  V  ++A G  EV L  ++  +YG   G       LL A+ A
Sbjct: 187 VPHLRGKERDRRPGEVLAEVEALVATGAIEVTLLGQNVNSYGVGFGDRGAFAKLLRAVGA 246

Query: 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 328
               DG   +R    +P    + +  IA +   P V   LH+P+QSGSD VL AM R Y 
Sbjct: 247 V---DGLERVRFTSPHPAAFTDDV--IAAMAATPTVMPQLHMPLQSGSDRVLRAMRRSYR 301

Query: 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
              F  ++D + + +P   I +DII GFPGET+EDF  T+ +++  +F      Q+ PRP
Sbjct: 302 AERFLGILDRVRDAIPHAAITSDIIVGFPGETEEDFAATLEVVEASRFASAFTFQYSPRP 361

Query: 389 GTPAARM-KKVPSAVVKKRSRELTSVFE 415
           GTPAA +  ++P AVV++R   L ++ E
Sbjct: 362 GTPAADLPGQLPKAVVQERYERLVALQE 389


>gi|354569012|ref|ZP_08988172.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Fischerella sp. JSC-11]
 gi|353539224|gb|EHC08716.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Fischerella sp. JSC-11]
          Length = 454

 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 113/350 (32%), Positives = 187/350 (53%), Gaps = 24/350 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  +++  +AD+ L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEDMGFEWSEDPNQADVILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K       L+VAGCV Q  G   L+ +  + +V G Q  +R+ +++++   G++V  
Sbjct: 69  AKRKHEQPDLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLQQVFDGNQVVA 128

Query: 174 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
                +   D+ K RR+ K    + +  GC   CTYC   + RG   S T E++   +  
Sbjct: 129 TEPIHIIE-DITKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMEE 187

Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
           +   G KEV L  ++  AYGRD+      G +   L + +  V ++P  G   +R   ++
Sbjct: 188 LGRQGYKEVTLLGQNIDAYGRDLPGVTPEGRHQHTLTDLLYYVHDVP--GVERIRFATSH 245

Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           P +  E L +  AE+   P V    H+P QSG + VL  M R YT   +R +++T+ E +
Sbjct: 246 PRYFTERLIRACAEL---PKVCEHFHIPFQSGDNEVLKRMARGYTHEKYRRIINTIREYM 302

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393
           P   I+ D I GFPGET+E F  T+ L+++  F Q++ + + PRPGTPAA
Sbjct: 303 PDAAISADAIVGFPGETEEQFENTLKLVEDIGFDQLNTAAYSPRPGTPAA 352


>gi|113474257|ref|YP_720318.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Trichodesmium
           erythraeum IMS101]
 gi|123057124|sp|Q119H9.1|MIAB_TRIEI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|110165305|gb|ABG49845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Trichodesmium erythraeum
           IMS101]
          Length = 451

 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 126/398 (31%), Positives = 204/398 (51%), Gaps = 33/398 (8%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G   +++  +ADI L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILDNMGLISSEDPNKADIILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 --KSAKKP---LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
             +  K+P   L+VAGCV Q       R + EL+   I+G Q  +R+ +++E+   G++V
Sbjct: 69  AKRKHKQPDLTLIVAGCVAQQEGAALLRRVPELD--LIMGPQHANRLQDLLEQVFNGNQV 126

Query: 172 RLLHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
                  +   D+ K RR+ K    + I  GC   CTYC     RG   S T E++   +
Sbjct: 127 VATEPIHI-VEDITKPRRDSKITAWVNIIYGCNEHCTYCVVPSVRGVEQSRTPEAIRAEM 185

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGM 282
             +   G +E+ L  ++  AYGRD+      G N     + +  V ++P  G   +R   
Sbjct: 186 EELGRQGYQEITLLGQNIDAYGRDLPGVTKEGRNKYTFTDLLYYVHDVP--GVERIRFAT 243

Query: 283 TNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
           ++P +  E L +  AE+   P V    H+P QSG + +L AM R YT   +R ++D + E
Sbjct: 244 SHPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNKLLKAMARGYTHEKYRRIIDKIRE 300

Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
           L+P   I+ D I GFPGET+  F  T+ L+++  F Q++ + + PRPGTPAA  +     
Sbjct: 301 LMPDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPAALWENQLGE 360

Query: 402 VVK----KRSRELTSVFEAFTPYLGMEGRVERIWITEI 435
            VK    +R   L  V  A      M GR+E + + ++
Sbjct: 361 EVKSDRLQRLNHLVGVKAADRSQRYM-GRIEEVLVEDM 397


>gi|222529490|ref|YP_002573372.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456337|gb|ACM60599.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 471

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 123/408 (30%), Positives = 190/408 (46%), Gaps = 68/408 (16%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
           T+GC  N  DSE +AG L+A GY  T+N +EAD+ + NTC+V+  ++S +   I   K  
Sbjct: 42  TYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNIGPLKRL 101

Query: 123 SAKKPLV---VAGCVPQ-------------------GSRDLKELEGVSIVGVQQIDRVVE 160
             KKP +   V GC+PQ                   G++ L +   +    + +   V+E
Sbjct: 102 KEKKPDLIVGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKKTVIE 161

Query: 161 VVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
           V E+            + +    +P  RR      + I  GC   C+YC   + RG   S
Sbjct: 162 VSED------------EDVVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGRERS 209

Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAI-----------V 267
              E ++  +  +  +G+KEV L  ++  +YG+D+G  +  P LL  +           V
Sbjct: 210 RRPEEIIYEIEQLAQNGIKEVTLLGQNVNSYGKDLGNSITFPKLLEKVNEIKGIERIRFV 269

Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 327
              P D S  L + M +   + EH+                H+PVQSGS  +L AMNR Y
Sbjct: 270 TSHPKDLSDELIVAMRDLEKVCEHI----------------HLPVQSGSTRILKAMNRHY 313

Query: 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
           T  D+  +V+ L   +P + I TDII GFPGETDEDF  T+++ ++ +F   +   +  R
Sbjct: 314 TKEDYLRLVEKLKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKR 373

Query: 388 PGTPAARM-KKVPSAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWI 432
            GTPA +M  +VP  +  +R + L  + E  A      M G+   I I
Sbjct: 374 RGTPAEKMPNQVPDDIKYQRFQRLVKLVEEIALKKNRQMLGKTYEILI 421


>gi|159903894|ref|YP_001551238.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Prochlorococcus marinus str. MIT 9211]
 gi|229890601|sp|A9BBS2.1|MIAB_PROM4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|159889070|gb|ABX09284.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9211]
          Length = 467

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 119/388 (30%), Positives = 195/388 (50%), Gaps = 23/388 (5%)

Query: 46  SKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT 105
           S     S + P   + ++ TFGC  N++DSE MAG L   GY   +   +AD+ L NTCT
Sbjct: 9   SSKAQESLQSPTKGSYWITTFGCQMNKADSERMAGILERMGYKQAEEELQADLVLYNTCT 68

Query: 106 VKSPSQSAMDTLIAKCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDR 157
           ++  ++  + + + +    KK      L+VAGCV Q  G   L+ +  + +V G Q  +R
Sbjct: 69  IRDNAEQKVYSYLGRQALRKKLFPQLKLIVAGCVAQQEGESLLRRVPELDLVMGPQHANR 128

Query: 158 VVEVVEETLKGHEVRLLHRKKLPAL-DLPKVRRNKFVEILPINV--GCLGACTYCKTKHA 214
           +  ++ +   G +V  L  ++L  + DL   RR+  +    +NV  GC   CTYC     
Sbjct: 129 LETLLNKVETGQQV--LATEELYIIEDLTTARRDSSI-CAWVNVIYGCNERCTYCVVPSV 185

Query: 215 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLP------ILLNAIVA 268
           RG   S T  ++   +  +   G KEV L  ++  AYGRD+    P       L + +  
Sbjct: 186 RGKEQSRTPPAIKREIENLANTGFKEVTLLGQNIDAYGRDLPGTTPQGRKKNTLTDLLYY 245

Query: 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 328
               +G   +R   ++P +    L E    L  P V    H+P QSG D +L+ M R Y 
Sbjct: 246 IHDIEGIERIRFATSHPRYFTSRLIEACAEL--PKVCEHFHIPFQSGDDEILNQMRRGYK 303

Query: 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
           +  ++ ++  + EL+P   I  D+I  FPGET+E F ++++L++E  F Q++ + + PRP
Sbjct: 304 IKTYKKIIGRIRELMPNASITADVIVAFPGETNEQFQRSLSLVEEIGFDQLNTAAYSPRP 363

Query: 389 GTPAARM-KKVPSAVVKKRSRELTSVFE 415
            TPAA    ++P  +  +R R+L S+ E
Sbjct: 364 NTPAALWPNQIPEEIKIERLRKLNSLVE 391


>gi|319778544|ref|YP_004129457.1| tRNA-i(6)A37 methylthiotransferase [Taylorella equigenitalis MCE9]
 gi|317108568|gb|ADU91314.1| tRNA-i(6)A37 methylthiotransferase [Taylorella equigenitalis MCE9]
 gi|399114834|emb|CCG17630.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Taylorella
           equigenitalis 14/56]
          Length = 469

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 203/386 (52%), Gaps = 39/386 (10%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
           G + +Y+KTFGC  N+ DSE MA  L A  G  LTDN E+AD+ L+NTC+++  +Q  + 
Sbjct: 29  GAKKLYIKTFGCQMNEYDSEKMADVLHAEKGLELTDNPEDADVILLNTCSIREKAQEKVF 88

Query: 116 TLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
           + + +    KK      + V GCV   +G+  L+    V I+ G Q + R+ E++E+  K
Sbjct: 89  SDLGRINLLKKKKPELLIGVGGCVASQEGATILQRAPYVDIIFGPQTLHRLPELIEQ--K 146

Query: 168 GHEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
               R       P ++    LP  R N     + I  GC   C+YC   + RG   S  +
Sbjct: 147 ESSGRAQVDVSFPEIEKFDHLPPARINGPTAFVSIMEGCSKYCSYCVVPYTRGEEISRPL 206

Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
           E ++  V  +   GVKE+ L  ++  AY   +G +  I   A++ EL  D   + RI   
Sbjct: 207 EDVLIEVADLADQGVKEINLLGQNVNAYRGTVGEDGEIADFAMLLELIHDIPGVERIR-- 264

Query: 284 NPPFILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
              +I  H KE+ + L     + P +  FLH+PVQ+GSD VL+AM R YT  ++++VV +
Sbjct: 265 ---YITSHPKEMTKRLIEAHAKLPKLVPFLHLPVQAGSDRVLAAMKRGYTSLEYKSVVRS 321

Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA----- 393
           L +  PG+ +++D I GFPGET++DF  T+ LIK+          +  RPGTPAA     
Sbjct: 322 LYKARPGLTLSSDFIVGFPGETEDDFEATLKLIKDLNIDTSFSFIYSRRPGTPAADLPDD 381

Query: 394 --------RMKKVPSAVVKKRSRELT 411
                   R++++  A+V K+++E +
Sbjct: 382 TPYEVKLDRLQRL-QALVNKQAKEFS 406


>gi|331001262|ref|ZP_08324888.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Parasutterella
           excrementihominis YIT 11859]
 gi|329568989|gb|EGG50785.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Parasutterella
           excrementihominis YIT 11859]
          Length = 441

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 129/397 (32%), Positives = 205/397 (51%), Gaps = 23/397 (5%)

Query: 61  IYMKTFGCSHNQSDS-EYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           IY+KTFGC  N+ DS +      +A GY +TD+  EAD+ + NTC+++  +Q  + + + 
Sbjct: 6   IYLKTFGCQMNEYDSGKIADIAKAAAGYEVTDDINEADLVVFNTCSIREKAQEKVFSDLG 65

Query: 120 KCKSAKK-----PLVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
           + +  KK      + V GCV   +G   ++    V +V G Q + R+ E++E+  K H  
Sbjct: 66  RVRELKKTKPNLKIAVGGCVASQEGGNIVRRAPYVDVVFGPQTLHRLPELLEKNEKEHRP 125

Query: 172 RL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           ++ +   ++   D LP    +     + I  GC   C+YC   + RG   S  VE ++  
Sbjct: 126 QVDISFPEIEKFDRLPTPHADAATAFVSIMEGCSKYCSYCVVPYTRGEEFSRPVEDVLVE 185

Query: 230 VRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
           +  + A GVKEV L  ++  AY   G D  +    LL   VAE+  DG   +R   ++P 
Sbjct: 186 IAQLAAQGVKEVTLLGQNVNAYRGEGPDGEIVDFALLLEYVAEI--DGIERIRYTTSHPK 243

Query: 287 FILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
              E    + E  R  P + + +H+PVQ+GSD VL+ M R YT+ ++++++  L  + P 
Sbjct: 244 ---EFTNRLIEAYRKIPILANHVHLPVQAGSDRVLAGMKRGYTILEYKSIIRKLRAIRPD 300

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
           + IATD I GFP ET+EDF +T+NLIKE KF       +  RPGTPAA +    P +V  
Sbjct: 301 ISIATDFIVGFPNETEEDFEKTMNLIKEIKFDASFSFVYSKRPGTPAAELPDDTPQSVKL 360

Query: 405 KRSRELTSVFEAFTPYL--GMEGRVERIWITEIAADG 439
           +R + L ++       +   M G V+R  +   A  G
Sbjct: 361 ERLQRLQALNTQHAQEISQSMVGSVQRCLVVGEAKKG 397


>gi|322691385|ref|YP_004220955.1| hypothetical protein BLLJ_1196 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456241|dbj|BAJ66863.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 480

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 195/397 (49%), Gaps = 27/397 (6%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTD--NSEEADIWLINTCTVKSPSQS 112
           G    ++ T GC  N  DSE +AG L A GY  A  D  N  + D+ ++NTC V+  +  
Sbjct: 23  GKGVFHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQINDNDLDLLVLNTCAVRENAAE 82

Query: 113 AMDTLIAKCKSAK--KP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVV 162
            M   I +    K  +P   + V GC+ Q  R  K++   +     + G + I+ + +++
Sbjct: 83  RMYGTIGRFNRVKLVRPNLQIAVGGCMAQLDR--KKIADTAPWVSAVFGTKNIEDLPKLL 140

Query: 163 EETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
           ++     + ++   ++L      LP  R ++    + I+VGC   CT+C     RG    
Sbjct: 141 DQNRATGKAQVQVTEQLRQFPSQLPAARASRISSWVAISVGCNNTCTFCIVPTTRGKEKD 200

Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTML 278
                ++  +R  +ADG KEV L  ++  ++G  IG       LL A       DG   +
Sbjct: 201 RRPGDILDEIRQCVADGAKEVTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERV 257

Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
           R    +P    + +  IA +   P +   LH P+QSGSD +L AM R Y  + F  ++  
Sbjct: 258 RFTSPHPAAFTDDV--IAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 315

Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 398
           +   +P  QI+TDII GFPGET+EDF QT++++++ +F       + PRPGTPAA M+++
Sbjct: 316 IRAAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAMEQI 375

Query: 399 PSAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWIT 433
           P  VV+ R   L ++ E  T       EGR   + IT
Sbjct: 376 PRDVVQDRFDRLVALQEQITEENLATFEGRDVEVMIT 412


>gi|229047455|ref|ZP_04193047.1| hypothetical protein bcere0027_34400 [Bacillus cereus AH676]
 gi|228723899|gb|EEL75252.1| hypothetical protein bcere0027_34400 [Bacillus cereus AH676]
          Length = 509

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 195/366 (53%), Gaps = 16/366 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y++T+GC  N+ D+E MAG  +A GY  T ++E+AD+ L+NTC ++  +++ +   +  
Sbjct: 68  FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127

Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            KS K+      + V GC+ Q     ++ +++ + V +V G   I R+  ++++ +   E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPKVRR      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R + A+G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+  + +   +   +H+PVQSGS  +L  M R+Y+   +  +V  + E +P   +
Sbjct: 307 DDPLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            TDII GFP ETDE F +T++L +E  F       + PR GTPAA+MK  VP  V K+R 
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424

Query: 408 RELTSV 413
           + L ++
Sbjct: 425 QRLNTL 430


>gi|240139952|ref|YP_002964429.1| tRNA modification enzyme MiaB, isopentenyl-adenosine A37 tRNA
           methylthiolase [Methylobacterium extorquens AM1]
 gi|418061495|ref|ZP_12699351.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Methylobacterium extorquens DSM 13060]
 gi|240009926|gb|ACS41152.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37
           tRNA methylthiolase [Methylobacterium extorquens AM1]
 gi|373564962|gb|EHP91035.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Methylobacterium extorquens DSM 13060]
          Length = 446

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 187/372 (50%), Gaps = 24/372 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           Y+K++GC  N  D+  MA  L+A GY+ TD  EEAD+ ++NTC ++  +   + + + + 
Sbjct: 5   YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 64

Query: 122 KSAKKP---------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
           +  K           +VVAGCV Q  G   L     V +V G Q   R+ +++ ++    
Sbjct: 65  RVLKGERAESGHDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 121

Query: 170 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
           E R++   + PA D    LP  R       L +  GC   C +C   + RG   S +V +
Sbjct: 122 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 180

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
           +V   R ++  GV+E+ L  ++  AY  D     P  L  ++  L    G   LR   ++
Sbjct: 181 VVDEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLRYTTSH 240

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           P    + L  IA    +P V  +LH+PVQSGSD +L AMNR +T   +R +++ +    P
Sbjct: 241 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDGILHAMNRRHTGDAYRRLIERIRNARP 298

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVV 403
            + +++D I GFPGETD DF +T+ L+ +  F      ++ PR GTPAA R   VP AV 
Sbjct: 299 DIALSSDFIVGFPGETDADFAETMRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPEAVK 358

Query: 404 KKRSRELTSVFE 415
            +R   L  + +
Sbjct: 359 TERLAALQDLLD 370


>gi|406667388|ref|ZP_11075146.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
           isronensis B3W22]
 gi|405384756|gb|EKB44197.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
           isronensis B3W22]
          Length = 511

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 195/387 (50%), Gaps = 18/387 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD----- 115
            Y++T+GC  N+ D+E MAG     GY  T+  EEAD+ L+NTC ++  +++ +      
Sbjct: 66  FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEMIEEADVVLLNTCAIRENAENKVFGELGF 125

Query: 116 TLIAKCKSAKKPLVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            L  K K+ +  + V GC+ Q     ++ LK+ + V +V G   I R+  ++ +     E
Sbjct: 126 LLKYKRKNPEMLIGVCGCMSQEESVVNKILKQYQHVDMVFGTHNIHRLPNILHDAYMSKE 185

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPK R       + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 186 MVVEVWSKEGDVIENLPKKRIGSIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 245

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 246 EVRELAAQGYKEIMLLGQNVNAYGKDFD-DIEYRLGDLMDELRKIDIPRIRFTTSHPRDF 304

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL E+  + +   +   +H+PVQSGS+ +L  M R+YT   F  +VD +   +PG+ +
Sbjct: 305 DDHLIEV--LAKGGNLVDHIHLPVQSGSNEILKIMARKYTREHFLQLVDKIKAAIPGVTL 362

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
            TDII G+P ET+E F +T++L ++  F       + PR GTPAA+M   V     K R 
Sbjct: 363 TTDIIVGYPNETEEQFQETLDLYRQVGFDMAFTYIYSPREGTPAAKMVDNVTEEEKKDRL 422

Query: 408 RELTSVFEAFTPYL--GMEGRVERIWI 432
             L +V   ++     G+EG+   + +
Sbjct: 423 HRLNAVVSEYSAKALKGLEGQTVEVLV 449


>gi|293400769|ref|ZP_06644914.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305795|gb|EFE47039.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 479

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 114/380 (30%), Positives = 193/380 (50%), Gaps = 24/380 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           Y++T+GC  N+ DSE +AG L    +   ++ E+AD+ L+NTC ++  ++  +   I   
Sbjct: 46  YLRTYGCQANERDSETLAGILEELMFTPVEHPEQADLILLNTCAIRKNAEDKVLGEIGSL 105

Query: 122 KSAKKP-----LVVAGCVPQGSRD-----LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
           K  K+        + GC+ Q   D     L++   V+++ G   + R+ E++ E + GH+
Sbjct: 106 KRLKRSNPDLIFGLCGCMAQ-EEDVVQVLLEKYRHVNLIFGTHNLHRLPELLYEVMVGHK 164

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +L ++     +LP  R  K    + I  GC   CTYC   + RG   S  +E ++ 
Sbjct: 165 RSVEVLSKEGEVIENLPVRRFGKHKAWVNIMYGCDKFCTYCIVPYTRGKERSRAMEDVLQ 224

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R +  DG KE+ L  ++  +YG+D+ +        ++ E    G   +R   ++P   
Sbjct: 225 EIRQLKQDGYKEITLLGQNVNSYGKDLHIEGG--FAKLLEETAKIGIERIRFTTSHPWDF 282

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + + ++  + R   +  F+H+PVQSG D +L  M R YT + + T+   + E +P   I
Sbjct: 283 SDEMIDV--IARFDNIMPFIHLPVQSGDDEILKIMGRRYTSAQYLTLFHKIKERMPECAI 340

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS- 407
           +TDII GFP E++E F  T++L+KE +F       + PR GTPAARM    S  VK+R  
Sbjct: 341 STDIIVGFPNESEEQFQHTLDLVKECQFDNAFTFIYSPREGTPAARMADSVSLEVKQRRL 400

Query: 408 RELTSVFEAFT-----PYLG 422
            EL + +  +       YLG
Sbjct: 401 AELNACWNHYAHVKNEAYLG 420


>gi|303256206|ref|ZP_07342222.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderiales bacterium
           1_1_47]
 gi|302860935|gb|EFL84010.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderiales bacterium
           1_1_47]
          Length = 441

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 129/397 (32%), Positives = 205/397 (51%), Gaps = 23/397 (5%)

Query: 61  IYMKTFGCSHNQSDS-EYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           IY+KTFGC  N+ DS +      +A GY +TD+  EAD+ + NTC+++  +Q  + + + 
Sbjct: 6   IYLKTFGCQMNEYDSGKIADIAKAAAGYEVTDDINEADLVVFNTCSIREKAQEKVFSDLG 65

Query: 120 KCKSAKK-----PLVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
           + +  KK      + V GCV   +G   ++    V +V G Q + R+ E++E+  K H  
Sbjct: 66  RVRELKKTKPNLKIAVGGCVASQEGGNIVRRAPYVDVVFGPQTLHRLPELLEKNEKEHRP 125

Query: 172 RL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           ++ +   ++   D LP    +     + I  GC   C+YC   + RG   S  VE ++  
Sbjct: 126 QVDISFPEIEKFDHLPTPHADAATAFVSIMEGCSKYCSYCVVPYTRGEEFSRPVEDVLVE 185

Query: 230 VRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
           +  + A GVKEV L  ++  AY   G D  +    LL   VAE+  DG   +R   ++P 
Sbjct: 186 IAQLAAQGVKEVTLLGQNVNAYRGEGPDGEIVDFALLLEYVAEI--DGIERIRYTTSHPK 243

Query: 287 FILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
              E    + E  R  P + + +H+PVQ+GSD VL+ M R YT+ ++++++  L  + P 
Sbjct: 244 ---EFTNRLIEAYRKIPILANHVHLPVQAGSDRVLAGMKRGYTILEYKSIIRKLRAIRPD 300

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
           + IATD I GFP ET+EDF +T+NLIKE KF       +  RPGTPAA +    P +V  
Sbjct: 301 ISIATDFIVGFPNETEEDFEKTMNLIKEIKFDASFSFVYSKRPGTPAAELPDDTPQSVKL 360

Query: 405 KRSRELTSVFEAFTPYL--GMEGRVERIWITEIAADG 439
           +R + L ++       +   M G V+R  +   A  G
Sbjct: 361 ERLQRLQALNTQHAQEISQSMVGSVQRCLVVGEAKKG 397


>gi|404370256|ref|ZP_10975579.1| MiaB/RimO family radical SAM methylthiotransferase [Clostridium sp.
           7_2_43FAA]
 gi|226913622|gb|EEH98823.1| MiaB/RimO family radical SAM methylthiotransferase [Clostridium sp.
           7_2_43FAA]
          Length = 434

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 189/366 (51%), Gaps = 26/366 (7%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +   T GC  N  +SE MA +    GY + D SE AD+++INTCTV +        +I++
Sbjct: 3   VAFSTLGCRVNVYESEAMAEKFIREGYEVVDASEAADVYVINTCTVTNMGDKKSRQIISR 62

Query: 121 CKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLKGHEV 171
            +   +   VA  GC  Q   +++ E+ GV +V G +    VV  V     E   + H  
Sbjct: 63  ARRLNENATVAVVGCYSQIAPKEVSEIPGVDVVLGTRNKGDVVYYVNKARDEGKSQVHVE 122

Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
            +L  KK   L++ + + +K    L I  GC   CTYC   ++RG + S   + ++  V 
Sbjct: 123 GVLKNKKFEELNIEEYQ-DKTRAFLKIQDGCNRFCTYCIIPYSRGSVCSKDPKKVLEEVN 181

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF-- 287
            +   G KE+ LS   T +YG D+   VNL  ++  I      +G   +RIG   P F  
Sbjct: 182 KLAEHGFKEIILSGIHTASYGLDLEGSVNLIDIIEEIE---KVEGIERIRIGSIEPAFFT 238

Query: 288 --ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             ++E +K+  ++  H       H+ +QSG DA L  MNR YT  ++   V+ L E +P 
Sbjct: 239 PEVIEKIKKFKKLCPH------FHLSLQSGCDATLKRMNRRYTAKEYADSVNLLRETMPD 292

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
           + I TD+I GFPGET+E+FN+T   +K  K  + H+ ++ PR GT AA M+ ++  ++ +
Sbjct: 293 VSITTDVIVGFPGETEEEFNETYEFLKNIKLTKTHVFKYSPRKGTKAADMQDQLDGSIKE 352

Query: 405 KRSREL 410
           KRS+ L
Sbjct: 353 KRSKLL 358


>gi|148241703|ref|YP_001226860.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
           sp. RCC307]
 gi|229891031|sp|A5GRJ8.1|MIAB_SYNR3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|147850013|emb|CAK27507.1| 2-methylthioadenine synthetase [Synechococcus sp. RCC307]
          Length = 453

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 125/400 (31%), Positives = 196/400 (49%), Gaps = 26/400 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T ++ TFGC  N++DSE MAG L + GY      ++AD+ L NTCT++  ++  + + + 
Sbjct: 8   TYWITTFGCQMNKADSERMAGILESMGYCAGSGEDQADLVLYNTCTIRDNAEQKVYSYLG 67

Query: 120 KCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
           +    K+      LVVAGCV Q  G   L+ +  + +V G Q  +R+  ++ +   G +V
Sbjct: 68  RQARRKRDNPALTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLDTLLSQVEAGQQV 127

Query: 172 RLLHRKKLPALDLPKVRRNK-FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
                  +   D+   RR+      + +  GC   CTYC     RG   S   +++   +
Sbjct: 128 VATDDHHILE-DITTARRDSSLCAWVNVIYGCNERCTYCVVPSVRGQEQSRLPQAIRLEM 186

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTN 284
             + A G KE+ L  ++  AYGRD+      G     L + +       G   +R   ++
Sbjct: 187 EGLAASGYKEITLLGQNIDAYGRDLPGITPEGRRQNTLTDLLHHVHDVKGIERIRFATSH 246

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           P +  E L E    L  P V    HVP QSG D +L AM R YT + +R +V+ + +L+P
Sbjct: 247 PRYFTERLIEACAEL--PKVCEHFHVPFQSGDDELLKAMARGYTTARYRRIVEQIRKLMP 304

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVV 403
              I+ D I GFPGETD  F +T+ L+ E  F  ++ + + PRP TPAA    +V   V 
Sbjct: 305 DAAISADAIVGFPGETDAQFRRTLELVDEIGFDLLNTAAYSPRPNTPAADWPDQVEEHVK 364

Query: 404 KKRSRELTSVFEAFTPYLGME--GRVERIWITEIAADGIH 441
            +R +EL ++ E           GRVE     E+ A+GI+
Sbjct: 365 VERLKELNALVERKAKACSQRYLGRVE-----EVLAEGIN 399


>gi|406914377|gb|EKD53564.1| hypothetical protein ACD_61C00012G0001, partial [uncultured
           bacterium]
          Length = 396

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 195/399 (48%), Gaps = 71/399 (17%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           ++++ TFGC  N+SDSE + G   + GY   D  +EAD  +INTC+V+   QSA D +  
Sbjct: 11  SVFINTFGCQANKSDSERILGDYLSRGYTEADTWKEADEIVINTCSVR---QSAEDRVTG 67

Query: 120 ---------------KCKSAKKPLVVAGCVPQ-GSRDLKELEGVSIVGVQQIDRVVEVVE 163
                           C+ A+  +++ GC+     +++K L       + QID ++ + E
Sbjct: 68  FLLNVEKFFDGKIRPACRKARPKIILTGCMLHFNEKEIKTL-------LPQIDEILPIGE 120

Query: 164 ETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
                              +   +R+ K    +PI+ GC   CTYC    +RG   S  +
Sbjct: 121 ----------------VGFNQKAIRKEKDKAFIPISSGCNSFCTYCIVPFSRGRERSRPL 164

Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRD-IGVNLPILL---NAIVAELPPDGSTMLR 279
           E +VG + T+ A+G KE+ L  ++  ++G + +GV L  +    +    ++ P   +   
Sbjct: 165 EDIVGEIETLAAEGYKEITLLGQNVNSWGLEKVGVALRKMFMDKDKFTPDIIPSNQSQYF 224

Query: 280 IGMTNPPFIL--------EHLKEIA---------------EVLRHPCVYSFLHVPVQSGS 316
                PPF++        E +K+I+               E+  +P +  F+H+PVQSGS
Sbjct: 225 KPQDTPPFVILLREIGKIEGIKKISFFTSNPWDFWDELIDEIASNPKIDRFIHLPVQSGS 284

Query: 317 DAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376
           + +L  MNR YT   + ++++ +   +P     TDII GFPGET+EDF  T+NL+K+  F
Sbjct: 285 NRILKLMNRGYTRESYLSLINQIKSKIPEAVFGTDIIVGFPGETEEDFQDTLNLVKDVGF 344

Query: 377 PQVHISQFYPRPGTPAARM--KKVPSAVVKKRSRELTSV 413
               ++++ PRPGT +A+     VP+ + K+R   L  +
Sbjct: 345 KVAFVARYSPRPGTVSAKFFPDDVPAKIKKQRWEILDQI 383


>gi|312135300|ref|YP_004002638.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
           owensensis OL]
 gi|311775351|gb|ADQ04838.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           owensensis OL]
          Length = 471

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 123/385 (31%), Positives = 193/385 (50%), Gaps = 22/385 (5%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
           T+GC  N  DSE +AG L+A GY  T+N +EAD+ + NTC+V+  ++S +   I   K  
Sbjct: 42  TYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNIGPLKRL 101

Query: 123 SAKKP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVR 172
             KKP   + V GC+PQ     ++L  +      I G + + +  +++    T K   + 
Sbjct: 102 KDKKPDLIIGVCGCMPQQLEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKRTVID 161

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           +   + +    +P  R+      + I  GC   C+YC   + RG   S   E ++  +  
Sbjct: 162 VSENEDVVVEGIPTARKQGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRRPEEIIYEIEQ 221

Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           +  +GVKEV L  ++  +YG+D+  G+  P LL  I  E+   G   +R   ++P  +  
Sbjct: 222 LAQNGVKEVTLLGQNVNSYGKDLVNGITFPKLLEKI-NEIK--GIERIRFVTSHPKDLSN 278

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
            L      L   C    +H+PVQSGS  +L AMNR YT  D+  +V+ L   +P + I T
Sbjct: 279 ELIAAMRDLEKVC--EHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEKLKTNIPDIAITT 336

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 409
           DII GFPGETDEDF  T+++ K+ +F   +   +  R GTPA +M  +VP  +  +R + 
Sbjct: 337 DIIVGFPGETDEDFEDTLDVCKKVEFDSAYTFIYSKRRGTPAEKMPNQVPDNIKHQRFQR 396

Query: 410 LTSVFE--AFTPYLGMEGRVERIWI 432
           L  + E  A      M G+   I I
Sbjct: 397 LVKLVEEIALKKNKQMLGKTYEILI 421


>gi|78044693|ref|YP_359280.1| MiaB-like tRNA modifying enzyme [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996808|gb|ABB15707.1| MiaB-like tRNA modifying enzyme [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 434

 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 121/360 (33%), Positives = 186/360 (51%), Gaps = 28/360 (7%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  NQ ++E + G     GY + D S+ ADI++INTCTV   S      +I K    
Sbjct: 8   TLGCKVNQYETEALKGAFLEKGYEIVDFSDYADIYVINTCTVTHLSDRKSRQMIRKAVQK 67

Query: 125 KKPLVVA--GCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
               VVA  GC  Q + +  LK  E   ++G    +R+VE+VE+ L+        R K+ 
Sbjct: 68  NPRAVVAAVGCYAQVAPEEILKIPEVNLVLGTVHKNRLVELVEKVLR-------ERTKIN 120

Query: 181 AL----------DLP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           A+          ++P K+   K    + I  GC   C YC   +ARG L S  +E +V  
Sbjct: 121 AVASFEELLEFEEMPLKLAPGKARAFVKIQEGCNSYCAYCIIPYARGPLRSRPLEDVVAE 180

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FI 288
           V+ +   G  E+ L+   TGAYG++   +LP L + +           LR+    P  F 
Sbjct: 181 VKKLCQSGFSEIVLTGIHTGAYGQE-KQDLPKLADLVAELFKIPELKRLRLSSIEPQDFT 239

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +E L  +A     P     LH+P+QSG D +L AM R+YT  ++  +++T+ E +P + +
Sbjct: 240 VELLDVLAN---SPKFCRHLHLPLQSGDDDILKAMRRKYTSYEYLRLIETIRERIPDIAL 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E F  T NL+K+  F  +H+ ++ PR GTPAA+M  ++P    ++RS
Sbjct: 297 TSDVIVGFPGETEEQFLNTYNLVKKVGFMDIHVFKYSPRAGTPAAKMPGQIPEREKERRS 356


>gi|67922391|ref|ZP_00515902.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Crocosphaera watsonii WH 8501]
 gi|67855735|gb|EAM50983.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
           enzyme MiaB [Crocosphaera watsonii WH 8501]
          Length = 452

 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 118/360 (32%), Positives = 187/360 (51%), Gaps = 22/360 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
           ++ TFGC  N++DSE MAG L   G+  + +   AD+ L NTCT++  ++  + + +   
Sbjct: 9   HITTFGCQMNKADSERMAGILEDMGFKWSQDPNGADLILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K K+    LVVAGCV Q  G + L+ +  + +V G Q  +R+ +++ +   G++V  
Sbjct: 69  AKRKHKNPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLEDLLTQVFDGNQVIA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
                +   D+ K RR+  V   + I  GC   C+YC     RG   S T E++   +  
Sbjct: 129 TEPIHI-VEDITKPRRDSTVTAWVNIIYGCNEKCSYCVVPSVRGVEQSRTPEAIYAEMEL 187

Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
           +   G KEV L  ++  AYGRD+      G +   L + +  V ++P  G   LR   ++
Sbjct: 188 LAKQGYKEVTLLGQNIDAYGRDLPGVTASGRHKHTLTDLLYQVHDIP--GIERLRFATSH 245

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           P +  E L +  + L  P V    H+P QSG + VL AM R YT   +R ++D + E +P
Sbjct: 246 PRYFTERLIKACDEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTHQKYRKIIDKIREYMP 303

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
              I+ D I GFP ET+E F  T+ L+ +  F Q++ + + PRPGTPAA  ++  S  VK
Sbjct: 304 DASISADAIVGFPEETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWEQQLSEEVK 363


>gi|423084190|ref|ZP_17072695.1| tRNA methylthiotransferase YqeV [Clostridium difficile
           002-P50-2011]
 gi|423086753|ref|ZP_17075144.1| tRNA methylthiotransferase YqeV [Clostridium difficile
           050-P50-2011]
 gi|357543237|gb|EHJ25270.1| tRNA methylthiotransferase YqeV [Clostridium difficile
           002-P50-2011]
 gi|357545862|gb|EHJ27825.1| tRNA methylthiotransferase YqeV [Clostridium difficile
           050-P50-2011]
          Length = 432

 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 119/380 (31%), Positives = 192/380 (50%), Gaps = 29/380 (7%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  NQ ++E M       GY   ++ E AD+++INTCTV   S       I + K  
Sbjct: 8   TLGCKVNQYETEAMLELFEKDGYEQVNSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKK 67

Query: 125 KKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
               ++A  GC  Q S  ++ ++E V++V G     ++VE +++     +V  +      
Sbjct: 68  NPDAIIAVVGCYSQVSPEEILDIEEVNLVMGTNDRRKIVEEIKKINSSKKVSTVD----- 122

Query: 181 ALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
             D+ KV+  + +EI          + I  GC   CTYC   +ARG + S  ++S+V  V
Sbjct: 123 --DIMKVKAFEEIEISQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDIDSIVDEV 180

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           + +  +G KEV L+     +YG+D+      LL+ I      +    +R+    P    +
Sbjct: 181 KKLANNGYKEVVLTGIHVASYGKDLKDRDIKLLDVIKQINQIEKIERIRLSSVEPILFTD 240

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
               + EVL+   V    H+ +QSG D  L  MNR YT  +++T+VD L   +P + I T
Sbjct: 241 EF--VNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPDVAITT 298

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
           D+I GFPGET+E+F +T   ++E +  Q+HI ++ PR GTPAA M+ +V   +   RS +
Sbjct: 299 DVIVGFPGETNEEFKKTYEFLREIELSQMHIFKYSPRKGTPAATMENQVDPQMKHFRSEQ 358

Query: 410 LTSV----FEAF-TPYLGME 424
           L ++    F  F T ++G E
Sbjct: 359 LLNLSKVNFNKFATKFIGRE 378


>gi|345009772|ref|YP_004812126.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           [Streptomyces violaceusniger Tu 4113]
 gi|344036121|gb|AEM81846.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Streptomyces violaceusniger Tu 4113]
          Length = 500

 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 192/378 (50%), Gaps = 17/378 (4%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE---EADIWLINTCTVKSPSQ 111
           +  T++  ++T+GC  N  DSE ++G L   G+          EADI + NTC V+  + 
Sbjct: 3   VQATKSYEIRTYGCQMNVHDSERLSGLLEEAGFVRATEGTGEGEADIVVFNTCAVRENAD 62

Query: 112 SAMDTLIAKCK--SAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVE 163
           + +   + +     A++P   + V GC+ Q  RD  +K+   V +V G   I  +  ++E
Sbjct: 63  NRLYGNLGRLAPIKARRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGSLPVLLE 122

Query: 164 ETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
                 E ++   + L A    LP  R + +   + I+VGC   CT+C     RG     
Sbjct: 123 RARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDR 182

Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
               ++  V T++A+GV E+ L  ++  AYG DIG +       + A    +G   +R  
Sbjct: 183 RPGDILAEVETLVAEGVTEITLLGQNVNAYGSDIG-DREAFSKLLRACGKVEGLERVRFT 241

Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
             +P    + +  I+ +     V   LH+P+QSGSD VL AM R Y    +  +++ +  
Sbjct: 242 SPHPRDFTDDV--ISAMAETENVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRA 299

Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPS 400
            +P   I+TDII GFPGET+EDF QT+++++E +F Q    Q+  RPGTPAA M  +VP 
Sbjct: 300 AMPDAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQVPK 359

Query: 401 AVVKKRSRELTSVFEAFT 418
           AVV++R   L ++ E  +
Sbjct: 360 AVVQERYERLVALQEEIS 377


>gi|255656429|ref|ZP_05401838.1| putative radical SAM superfamily protein [Clostridium difficile
           QCD-23m63]
 gi|296450124|ref|ZP_06891885.1| 2-methylthioadenine synthetase [Clostridium difficile NAP08]
 gi|296878505|ref|ZP_06902510.1| 2-methylthioadenine synthetase [Clostridium difficile NAP07]
 gi|296260887|gb|EFH07721.1| 2-methylthioadenine synthetase [Clostridium difficile NAP08]
 gi|296430312|gb|EFH16154.1| 2-methylthioadenine synthetase [Clostridium difficile NAP07]
          Length = 432

 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 119/378 (31%), Positives = 191/378 (50%), Gaps = 29/378 (7%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  NQ ++E M       GY   ++ E AD+++INTCTV   S       I + K  
Sbjct: 8   TLGCKVNQYETEAMLELFEKDGYEQVNSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKK 67

Query: 125 KKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
               ++A  GC  Q S  ++ ++E V++V G     ++VE +++     +V  +      
Sbjct: 68  NPDAIIAVVGCYSQVSPEEILDIEEVNLVMGTNDRRKIVEEIKKINSSKKVSTVD----- 122

Query: 181 ALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
             D+ KV+  + +EI          + I  GC   CTYC   +ARG + S  ++S+V  V
Sbjct: 123 --DIMKVKAFEEIEISQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDIDSIVDEV 180

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           + +  +G KEV L+     +YG+D+      LL+ I      +    +R+    P    +
Sbjct: 181 KKLANNGYKEVVLTGIHVASYGKDLKDRDIKLLDVIKQINKIEKIERIRLSSVEPILFTD 240

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
               + EVL+   V    H+ +QSG D  L  MNR YT  +++T+VD L   +P + I T
Sbjct: 241 EF--VNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPDVAITT 298

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
           D+I GFPGET+E+F +T   +KE +  Q+HI ++ PR GTPAA M+ +V   +   RS +
Sbjct: 299 DVIVGFPGETNEEFKKTYEFLKEIELSQMHIFKYSPRKGTPAATMENQVDPQMKHFRSEQ 358

Query: 410 LTSV----FEAF-TPYLG 422
           L ++    F  F T ++G
Sbjct: 359 LLNLSKVNFNKFATKFIG 376


>gi|15643418|ref|NP_228462.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
           maritima MSB8]
 gi|418045177|ref|ZP_12683273.1| RNA modification enzyme, MiaB family [Thermotoga maritima MSB8]
 gi|81553183|sp|Q9WZC1.1|MIAB_THEMA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|4981175|gb|AAD35737.1|AE001738_17 conserved hypothetical protein [Thermotoga maritima MSB8]
 gi|351678259|gb|EHA61406.1| RNA modification enzyme, MiaB family [Thermotoga maritima MSB8]
          Length = 443

 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 124/397 (31%), Positives = 208/397 (52%), Gaps = 19/397 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y+KTFGC  N++DSE MAG L   G+    + EEAD+ +INTC V+  S+    + + +
Sbjct: 3   FYIKTFGCQMNENDSEAMAGLLVKEGFTPASSPEEADVVIINTCAVRRKSEEKAYSELGQ 62

Query: 121 CKSAKKPLV----VAGCVPQGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL- 174
               KK       VAGCV +  R+    +G   V G + + RV E V++ L+G +V L  
Sbjct: 63  VLKLKKKKKIVVGVAGCVAEKEREKFLEKGADFVLGTRAVPRVTEAVKKALEGEKVALFE 122

Query: 175 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
            H  +    +LP++R ++    + I  GC   CTYC   + RG   S  +  ++  V+ +
Sbjct: 123 DHLDEYTH-ELPRIRTSRHHAWVTIIHGCDRFCTYCIVPYTRGRERSRPMADILEEVKKL 181

Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
              G +EV    ++  AYG+D+  G +L  LL         +G   +    + P    + 
Sbjct: 182 AEQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS---KIEGIERIWFLTSYPTDFSDE 238

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
           L E+  + ++P V   +H+PVQSGS+ +L  MNR YT  ++  +++ +   VP + I++D
Sbjct: 239 LIEV--IAKNPKVAKSVHLPVQSGSNRILKLMNRRYTKEEYLALLEKIRSKVPEVAISSD 296

Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRE 409
           II GFP ET+EDF +TV+L+++ +F +++++ + PR GT A +  K  VP     +R + 
Sbjct: 297 IIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVPYEEKVRRMQF 356

Query: 410 LTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVR 444
           L ++ +     L     G+  RI +   A +G+   R
Sbjct: 357 LMNLQKRINRKLNERYRGKTVRIIVEAQAKNGLFYGR 393


>gi|302542068|ref|ZP_07294410.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302459686|gb|EFL22779.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
           himastatinicus ATCC 53653]
          Length = 496

 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 119/375 (31%), Positives = 189/375 (50%), Gaps = 17/375 (4%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE---EADIWLINTCTVKSPSQSAM 114
            +T  ++T+GC  N  DSE ++G L   GY          EADI + NTC V+  + + +
Sbjct: 3   AKTYEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGTGEGEADIVVFNTCAVRENADNRL 62

Query: 115 DTLIAKCK--SAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL 166
              + +     A++P   + V GC+ Q  RD  +K+   V +V G   I  +  ++E   
Sbjct: 63  YGNLGRLAPVKARRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGSLPVLLERAR 122

Query: 167 KGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
              E ++   + L A    LP  R + +   + I+VGC   CT+C     RG        
Sbjct: 123 VQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPG 182

Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
            ++  V  ++A+GV E+ L  ++  AYG DIG +       + A    +G   +R    +
Sbjct: 183 DILAEVEALVAEGVTEITLLGQNVNAYGSDIG-DREAFSKLLRACGNVEGLERVRFTSPH 241

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           P    + +  IA +     V   LH+P+QSGSD VL AM R Y    +  +++ +   +P
Sbjct: 242 PRDFTDDV--IAAMAETENVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRAAMP 299

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
              I+TDII GFPGETDEDF QT+++++E +F Q    Q+  RPGTPAA M  ++P AVV
Sbjct: 300 DAAISTDIIVGFPGETDEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQLPKAVV 359

Query: 404 KKRSRELTSVFEAFT 418
           ++R   L ++ E  +
Sbjct: 360 QERYERLVALQEEIS 374


>gi|172037723|ref|YP_001804224.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
           ATCC 51142]
 gi|354553405|ref|ZP_08972711.1| RNA modification enzyme, MiaB family [Cyanothece sp. ATCC 51472]
 gi|229890507|sp|B1WU96.1|MIAB_CYAA5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|171699177|gb|ACB52158.1| tRNA-i(6)A37 modification enzyme MiaB [Cyanothece sp. ATCC 51142]
 gi|353554122|gb|EHC23512.1| RNA modification enzyme, MiaB family [Cyanothece sp. ATCC 51472]
          Length = 448

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 178/347 (51%), Gaps = 18/347 (5%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  +++   AD+ L NTCT++  ++  + + + + 
Sbjct: 11  HITTFGCQMNKADSERMAGILEDMGFKWSEDPNTADLILYNTCTIRDNAEQKVYSYLGRQ 70

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K       LVVAGCV Q  G + L+ +  + +V G Q  +R+ +++ +   G++V  
Sbjct: 71  AKRKHEHPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLQDLLTQVFDGNQVVA 130

Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
                +   D+ K RR+  V   + I  GC   C+YC   + RG   S T E++   +  
Sbjct: 131 TEPIHI-VEDITKPRRDSTVTAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYAEMEL 189

Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
           +   G KEV L  ++  AYGRD+      G +   L + +       G   LR   ++P 
Sbjct: 190 LGKQGYKEVTLLGQNIDAYGRDLPGVTETGRHQHTLTDLLYQVHDISGIERLRFATSHPR 249

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
           +  E L +    L  P V    H+P QSG + VL AM R YT   +R ++D + E +P  
Sbjct: 250 YFTERLIKACHEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTHEKYRHIIDKIREYMPDA 307

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393
            I+ D I GFPGET+  F  T+ L+ +  F Q++ + + PRPGTPAA
Sbjct: 308 SISADAIVGFPGETEAQFENTLKLVDDIGFDQLNTAAYSPRPGTPAA 354


>gi|338731013|ref|YP_004660405.1| MiaB-like tRNA modifying protein [Thermotoga thermarum DSM 5069]
 gi|335365364|gb|AEH51309.1| MiaB-like tRNA modifying enzyme [Thermotoga thermarum DSM 5069]
          Length = 434

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 192/367 (52%), Gaps = 15/367 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y+   GC  NQ ++E++  +L   G+    +   ADI ++NTC V + +      +I K
Sbjct: 4   VYVTFLGCKVNQYETEFLIEKLEKNGFVHVTDPSSADICVVNTCMVTNEAARQSRQVIRK 63

Query: 121 CKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR- 176
            K      VV   GC      + L ++    ++G  +   +VE + + L+    + LHR 
Sbjct: 64  FKRVNPNCVVVAVGCYSHLDGQKLIKIGADLVLGNAEKQNIVEYILDYLQTR--KPLHRV 121

Query: 177 KKLPALDLPKVRR---NKFVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRT 232
            K  ++   KV     ++    + I  GC   C+YC   +ARG  + S  +  +V  V+ 
Sbjct: 122 TKSDSIVEEKVESFLTDRTRAYVKIEDGCYEMCSYCIVPYARGQKIRSKPIHEVVDEVQK 181

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
           +++ G KE+ L   + G YG+D G +L  L+ +   ++  +G   +R+   N   I E L
Sbjct: 182 LVSSGYKEIVLVGVNLGKYGKDTGESLSKLIESCFNQV--NGEFRIRLSSINVQDIGEDL 239

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
            E+ +     C +  LH+P+QSGSD +LS MNR+Y +SDF  VV+   E+       TDI
Sbjct: 240 VEVFKRYNRLCPH--LHIPLQSGSDRILSMMNRKYKVSDFLNVVEKFREINTDFSFTTDI 297

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 411
           I GFPGET  DF+QT+ +I++ KF +VH  +F PRPGTPA+   K++P    ++R +EL 
Sbjct: 298 IVGFPGETLGDFHQTLKVIEQVKFTKVHAFRFSPRPGTPASSFDKQIPPKEKERRLKELK 357

Query: 412 SVFEAFT 418
            + E  +
Sbjct: 358 ELSEKVS 364


>gi|289549019|ref|YP_003474007.1| MiaB family RNA modification protein [Thermocrinis albus DSM 14484]
 gi|289182636|gb|ADC89880.1| RNA modification enzyme, MiaB family [Thermocrinis albus DSM 14484]
          Length = 437

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 127/369 (34%), Positives = 199/369 (53%), Gaps = 26/369 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           Y+KTFGC  N +DSE + G L   GY   D  EEAD+ LINTCT++      + + + + 
Sbjct: 4   YIKTFGCQMNFNDSERIKGILHHMGYKPADTPEEADLILINTCTIREKPDQKVYSHLGEY 63

Query: 122 KS--AKKPLV---VAGCVPQGSRDLKELEGVSIVGVQ----QIDRVVEVVEETLKGHEVR 172
           K    K+P V   V GC+ Q     + +E   +V +      I  + E++++   G+  R
Sbjct: 64  KKIKEKRPEVIIGVCGCLAQ-RMGWQLVEKAPVVDLMFSSFNIHHLPELIQQAQAGY--R 120

Query: 173 LLHRKKLPALD------LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
            +   + P  D         VR N +   + +  GC   CTYC     RG   S ++ES+
Sbjct: 121 AIAILEEPPEDEDRMWEFKTVRDNAYCAYVTVMKGCDKHCTYCVVPKTRGRQRSRSLESI 180

Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
           +  VR ++ADGVKE+ L  ++  A+G+DI ++   LL   VAE+P  G   +R    +P 
Sbjct: 181 LEEVRWLVADGVKEIHLLGQNVTAWGQDINIHFSELLYR-VAEIP--GVERIRFTTGHPS 237

Query: 287 FILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
            + E + K + ++   P +   LH+PVQSGS+ +L  M R YT  ++   +  L E VPG
Sbjct: 238 DMDERIAKAMGDI---PQICEHLHLPVQSGSNRILKLMERNYTKEEYLEKIHMLREYVPG 294

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
           +  +TDII GFP ET+EDF +T++++++ +F QV   ++ PRP TPAA M+ ++P  V  
Sbjct: 295 ITFSTDIIVGFPTETEEDFEETLDVLRKVRFEQVFSFKYSPRPDTPAAYMEGQIPDEVKT 354

Query: 405 KRSRELTSV 413
            R   L S+
Sbjct: 355 DRMSRLLSL 363


>gi|374296083|ref|YP_005046274.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Clostridium clariflavum DSM 19732]
 gi|359825577|gb|AEV68350.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Clostridium clariflavum DSM 19732]
          Length = 475

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 190/363 (52%), Gaps = 18/363 (4%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           Y++TFGC  N+ DSE +AG L+  GYA   N E +D+ + NTC V+  ++  +   +   
Sbjct: 42  YIETFGCQMNEHDSEKLAGMLNEMGYAEGSNMENSDLIIYNTCCVRENAELKVYGHLGPM 101

Query: 122 KSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE- 170
           K  KK      + V GC+ Q    ++ ++ V      I G   + +  E++   +   + 
Sbjct: 102 KHLKKDNPDLIIAVCGCMMQQPEVVEHIKKVYRHVDLIFGTHNLYKFPELLYNAISSDQT 161

Query: 171 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
            + ++    L A D+P  R++ F   + +  GC   C+YC   + RG   S     +V  
Sbjct: 162 VIEIMDSIGLIAEDVPIQRKDGFKAWVTVMYGCNNFCSYCIVPYVRGRERSREFGKIVEE 221

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFI 288
           V+ +   GVKE+ L  ++  +YG+D+G ++      ++ EL   +G   +R   ++P  +
Sbjct: 222 VKMLGQQGVKEITLLGQNVNSYGKDLGGDIS--FARLLTELNKVEGIERIRFMTSHPKDL 279

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L      L   C +  LH+P Q+GS  +L  MNR+YT  D+  +V+ + + +P + +
Sbjct: 280 SDELIYAMRDLDKLCEH--LHLPFQAGSTKILKEMNRKYTKEDYLRLVEKIKQNIPDISL 337

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MKKVPSAVVKKRS 407
            TDII GFPGET+EDF  T+ ++++ +F Q +   +  R GTPAA+ + ++P  V K+R 
Sbjct: 338 TTDIIVGFPGETEEDFQDTLVVVEKVRFDQAYTFLYSKRTGTPAAKSLNQIPEEVKKERF 397

Query: 408 REL 410
           + L
Sbjct: 398 QRL 400


>gi|295696236|ref|YP_003589474.1| MiaB family RNA modification protein [Kyrpidia tusciae DSM 2912]
 gi|295411838|gb|ADG06330.1| RNA modification enzyme, MiaB family [Kyrpidia tusciae DSM 2912]
          Length = 484

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 117/380 (30%), Positives = 189/380 (49%), Gaps = 19/380 (5%)

Query: 53  PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
           P +   +  +++T+GC  N+ DSE MAG L   GY      EEAD+ L NTC V+  ++ 
Sbjct: 35  PAVGVGKRYWIRTYGCQMNEHDSEIMAGMLQEMGYRPASAPEEADLILFNTCAVRENAED 94

Query: 113 AMDTLIAKCKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVV 162
            +   I + K  K+      L + GC+ Q  +  + +         + G   + ++ E+V
Sbjct: 95  KVFGEIGRIKPLKRRHPELLLGLCGCMAQEEKVRQFVRDTFPHVDLVFGTHNLHQLPELV 154

Query: 163 EETLKGHEV--RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
            + +   E    +  R      +LPK+R++     + I  GC   CTYC     RG   S
Sbjct: 155 VQAMASQETVFAVWDRPGQVVENLPKLRQDGVKAWVNIQYGCNKYCTYCIVPFTRGRERS 214

Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLR 279
              E +V  V+ +  +G++EV L  ++   YG D+G V+   LL   VA +P  G   +R
Sbjct: 215 RLPEDVVAEVKQLAEEGIREVTLLGQNVNDYGLDLGDVDFADLLQQ-VARIP--GIERVR 271

Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
              +NP    + L ++       C +  +H+PVQSG++ +L  MNR YT   +  +V+ +
Sbjct: 272 FTTSNPWNFTDKLIDVIAAEEAICEH--IHLPVQSGNNRILKRMNRGYTRETYLQLVERI 329

Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 399
            + +PG+ + TDII GFPGET+E+F  T++L++  +F       +  R GT AARMK   
Sbjct: 330 RDRIPGVSLTTDIIVGFPGETEEEFQDTLDLVRTVQFDNAFTFLYSRRQGTAAARMKDDT 389

Query: 400 SAVVKK-RSRELTSVFEAFT 418
           S   KK R R L  +  A +
Sbjct: 390 SLEAKKDRLRRLNELQAAIS 409


>gi|291448226|ref|ZP_06587616.1| RNA modification enzyme [Streptomyces roseosporus NRRL 15998]
 gi|291351173|gb|EFE78077.1| RNA modification enzyme [Streptomyces roseosporus NRRL 15998]
          Length = 506

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 195/384 (50%), Gaps = 16/384 (4%)

Query: 48  TGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCT 105
           +G+ S  +   ++  ++T+GC  N  DSE ++G L   GY  A   +  +AD+ + NTC 
Sbjct: 3   SGNRSEAVDVQKSYEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGSDGDADVVVFNTCA 62

Query: 106 VKSPSQSAMDTLIAKCK--SAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDR 157
           V+  + + +   + +      K+P   + V GC+ Q  RD  +K    V +V G   I +
Sbjct: 63  VRENADNKLYGNLGRLAPMKTKRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGK 122

Query: 158 VVEVVEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 215
           +  ++E      E ++   + L A    LP  R + +   + I+VGC   CT+C     R
Sbjct: 123 LPVLLERARIQEEAQIEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALR 182

Query: 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275
           G         ++  +  ++A+GV E+ L  ++  AYG DIG +       + A    +G 
Sbjct: 183 GKEKDRRTGDILAEIEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGL 241

Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
             +R    +P    + +  IA +   P V   LH+P+QSGSD++L AM R Y    F  +
Sbjct: 242 ERVRFTSPHPRDFTDDV--IAAMAETPNVMPQLHMPMQSGSDSILKAMRRSYRQERFLGI 299

Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395
           ++ +   +P   I+TDII GFPGET+EDF QT++ ++E +F      Q+  RPGTPAA M
Sbjct: 300 IEKVRAAMPDAAISTDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAADM 359

Query: 396 K-KVPSAVVKKRSRELTSVFEAFT 418
             ++P  VV++R   L+++ E  +
Sbjct: 360 DGQIPKEVVQERYMRLSALQEQIS 383


>gi|312127450|ref|YP_003992324.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777469|gb|ADQ06955.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 471

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 116/366 (31%), Positives = 189/366 (51%), Gaps = 20/366 (5%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
           T+GC  N  DSE +AG L+A GY  T+N +EAD+ + NTC+V+  ++S +   I   K  
Sbjct: 42  TYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNIGPLKRL 101

Query: 123 SAKKP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETL--KGHEVR 172
             KKP   + V GC+PQ     ++L  +      I G + + +  +++   +  K   + 
Sbjct: 102 KDKKPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAIMEKKTVID 161

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           +   + +    +P  R+      + I  GC   C+YC   + RG   S   E +V  +  
Sbjct: 162 VSEDEDVVVEGIPTARKQGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRRPEEIVYEIEQ 221

Query: 233 VIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           +  +GVKEV L  ++  +YG+D+G  +  P LL   V E+   G   +R   ++P  + +
Sbjct: 222 LAQNGVKEVTLLGQNVNSYGKDLGDGITFPKLLEK-VNEIK--GIERIRFVTSHPKDLSD 278

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
            L      L   C    +H+PVQSGS  +L AMNR YT  D+  +++ L   +P + I T
Sbjct: 279 ELIVAMRDLEKVC--EHIHLPVQSGSTRILKAMNRHYTKEDYLRLIEKLKTNIPDIAITT 336

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 409
           DII GFPGETDEDF  T+++ ++ +F   +   +  R GTPA +M  +VP  + ++R + 
Sbjct: 337 DIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQVPDDIKRQRFQR 396

Query: 410 LTSVFE 415
           L  + E
Sbjct: 397 LVKLVE 402


>gi|134299740|ref|YP_001113236.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Desulfotomaculum reducens MI-1]
 gi|229890514|sp|A4J5Q8.1|MIAB_DESRM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|134052440|gb|ABO50411.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum reducens
           MI-1]
          Length = 456

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 183/363 (50%), Gaps = 15/363 (4%)

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
           +++FGC  N+ D+E +AG L   GY  T   EEADI L+NTC V+  ++S +  L+ + +
Sbjct: 21  IQSFGCQMNERDAESLAGMLEDLGYCPTSAQEEADIILLNTCCVRETAESKVFGLLGRLR 80

Query: 123 SAK--KP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE-- 170
             K  KP   L V GC+ Q     K +         I G   I  +  ++ +  + HE  
Sbjct: 81  KLKVAKPDLILGVCGCMSQQEDAAKRIRRSFPFVDLIFGTHNIHELPRMIHQVQENHEAV 140

Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           + +   +K     +P  R++K    + I  GC   CTYC   + RG   S   E ++  +
Sbjct: 141 LEVWATEKGITESIPVKRKDKLKAWVTIMYGCNNFCTYCIVPYVRGRERSRQPEDIIDEI 200

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           + ++ +G KEV L  ++  +YG+D   N     + ++A     G   +R   ++P    +
Sbjct: 201 KELVQEGYKEVTLLGQNVNSYGKDFKNNYR-FADLLMAIDDITGLERVRFMTSHPRDFDQ 259

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
            L E+    +  C +   H+P Q+GS+ VL  MNR YT   +  ++  + E VP   I  
Sbjct: 260 RLIEVVASAKKVCEH--YHLPAQAGSNRVLKMMNRGYTREHYLELIRKIKERVPNASITA 317

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 410
           D++ GFPGET+EDF +T++L+K+ ++       +  R GTPAA++++V   V  +R + L
Sbjct: 318 DLMVGFPGETEEDFQETLDLVKQVRYDSAFTFVYNIRSGTPAAKLEQVSEEVKSERIQRL 377

Query: 411 TSV 413
             +
Sbjct: 378 IEL 380


>gi|357410789|ref|YP_004922525.1| MiaB family RNA modification protein [Streptomyces flavogriseus
           ATCC 33331]
 gi|320008158|gb|ADW03008.1| RNA modification enzyme, MiaB family [Streptomyces flavogriseus
           ATCC 33331]
          Length = 506

 Score =  177 bits (449), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 195/384 (50%), Gaps = 16/384 (4%)

Query: 48  TGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCT 105
           +G+ S  +   ++  ++T+GC  N  DSE ++G L   GY  A   +  +AD+ + NTC 
Sbjct: 3   SGNRSEAVDVQKSYEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGSDGDADVVVFNTCA 62

Query: 106 VKSPSQSAMDTLIAKCK--SAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDR 157
           V+  + + +   + +      K+P   + V GC+ Q  RD  ++    V +V G   I +
Sbjct: 63  VRENADNKLYGNLGRLAPMKTKRPGMQIAVGGCLAQKDRDTIVRRAPWVDVVFGTHNIGK 122

Query: 158 VVEVVEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 215
           +  ++E      E ++   + L A    LP  R + +   + I+VGC   CT+C     R
Sbjct: 123 LPVLLERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALR 182

Query: 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275
           G         ++  +  ++A+GV E+ L  ++  AYG DIG +       + A    +G 
Sbjct: 183 GKEKDRRTGDILAEIEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGTIEGL 241

Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
             +R    +P    + +  IA +   P V   LH+P+QSGSD +L AM R Y    F  +
Sbjct: 242 ERVRFTSPHPRDFTDDV--IAAMAETPNVMPQLHMPMQSGSDTILKAMRRSYRQERFLGI 299

Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395
           ++ +   +P   I+TDII GFPGET+EDF QT++ ++E +F      Q+  RPGTPAA M
Sbjct: 300 IEKVRAAMPDAAISTDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAAEM 359

Query: 396 K-KVPSAVVKKRSRELTSVFEAFT 418
           + ++P  VV++R   L+++ E  +
Sbjct: 360 EGQIPKEVVQERYMRLSALQEQIS 383


>gi|427706129|ref|YP_007048506.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nostoc sp. PCC 7107]
 gi|427358634|gb|AFY41356.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nostoc sp. PCC 7107]
          Length = 454

 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 191/361 (52%), Gaps = 24/361 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
           ++ TFGC  N++DSE MAG L   G+  +++   AD+ L NTCT++  ++  + + +   
Sbjct: 9   HITTFGCQMNKADSERMAGILEDMGFEFSEDPNHADVILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K + A   LVVAGCV Q  G   L+ +  + +V G Q  +R+ +++E   +G++V  
Sbjct: 69  AKRKHEKADLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFEGNQVVA 128

Query: 174 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
                +   D+ + RR+ K    + +  GC   CTYC   + RG   S T E++   +  
Sbjct: 129 TEAVHIME-DITQPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMVE 187

Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
           +   G KE+ L  ++  AYGRD+      G +L    + +  V ++P  G   LR   ++
Sbjct: 188 LGRQGYKEITLLGQNIDAYGRDLPGVTPEGRHLHTFTDLLYYVHDVP--GVERLRFATSH 245

Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           P +  E L K  AE+   P V    H+P QSG + +L AM+R YT   +R ++DT+ + +
Sbjct: 246 PRYFTERLIKACAEL---PKVCEHFHIPFQSGDNELLKAMSRGYTHEKYRRIIDTIRKYM 302

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
           P   I+ D I GFPGET+  F  T+ L+++  F  ++ + + PRPGTPAA  +   S  V
Sbjct: 303 PDASISGDAIVGFPGETEAQFENTLKLVEDIGFDLLNTAAYSPRPGTPAALWENQLSEEV 362

Query: 404 K 404
           K
Sbjct: 363 K 363


>gi|160896962|ref|YP_001562544.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Delftia
           acidovorans SPH-1]
 gi|333916610|ref|YP_004490342.1| MiaB family RNA modification protein [Delftia sp. Cs1-4]
 gi|229890511|sp|A9BUQ1.1|MIAB_DELAS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|160362546|gb|ABX34159.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Delftia acidovorans
           SPH-1]
 gi|333746810|gb|AEF91987.1| RNA modification enzyme, MiaB family [Delftia sp. Cs1-4]
          Length = 442

 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 132/403 (32%), Positives = 206/403 (51%), Gaps = 21/403 (5%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
           ++ +++KTFGC  N+ DS+ MA  L +A GY  TD+ E+AD+ L NTC+V+  +Q  + +
Sbjct: 2   SKKVFIKTFGCQMNEYDSDKMADVLGAAQGYESTDDPEQADLILFNTCSVREKAQEKVFS 61

Query: 117 LIAKCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            + + K  K+  V   V GCV   +G   +K    V +V G Q + R+ E++      H+
Sbjct: 62  DLGRYKHLKERGVLIGVGGCVASQEGEEIIKRAPYVDVVFGPQTLHRLPELLNARAAKHK 121

Query: 171 VRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
            ++ +   ++   D LP  R       + I  GC   C+YC   + RG   S   E ++ 
Sbjct: 122 PQVDISFPEIEKFDHLPPARVEGSSAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDVLI 181

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGMTN 284
            V  +   GVKEV L  ++  AY   +G    I    LL   V+E+P  G   +R   ++
Sbjct: 182 EVAGLADQGVKEVTLLGQNVNAYLGKMGDTAEIADFALLLEYVSEIP--GIERIRYTTSH 239

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           P      L  I    R P + S LH+PVQ GSD +L AM R YT  ++++ +  L  + P
Sbjct: 240 PNEFTPRL--IEAYARLPKLVSHLHLPVQHGSDKILMAMKRGYTAMEYKSTIRKLRAIRP 297

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVV 403
            M +++D I GFPGET+EDF + + LI + +F       F PRPGTPAA +    P  V 
Sbjct: 298 EMAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDDTPHEVK 357

Query: 404 KKRSRELTSVFEAFTPYLGME--GRVERIWITEIAA-DGIHLV 443
            +R +EL +V       +  E  G V+R+ +  ++  DG  L+
Sbjct: 358 LRRLQELQAVINNNIKDISDERVGTVQRLLVEGLSKRDGSELM 400


>gi|213691832|ref|YP_002322418.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Bifidobacterium longum subsp. infantis ATCC 15697 = JCM
           1222]
 gi|229890433|sp|B7GQG0.1|MIAB_BIFLS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|213523293|gb|ACJ52040.1| RNA modification enzyme, MiaB family [Bifidobacterium longum subsp.
           infantis ATCC 15697 = JCM 1222]
          Length = 484

 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 195/397 (49%), Gaps = 27/397 (6%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTD--NSEEADIWLINTCTVKSPSQS 112
           G    ++ T GC  N  DSE +AG L A GY  A  D  N  + D+ ++NTC V+  +  
Sbjct: 27  GKGVFHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQINDNDLDLLVLNTCAVRENAAE 86

Query: 113 AMDTLIAKCKSAK--KP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVV 162
            M   I +    K  +P   + V GC+ Q  R  K++   +     + G + I+ + +++
Sbjct: 87  RMYGTIGRFNRVKLVRPNLQIAVGGCMAQLDR--KKIADTAPWVSAVFGTKNIEDLPKLL 144

Query: 163 EETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
           ++     + ++   ++L      LP  R ++    + I+VGC   CT+C     RG    
Sbjct: 145 DQNRATGKAQVQVTEQLRQFPSQLPAARASRISSWVAISVGCNNTCTFCIVPTTRGKEKD 204

Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTML 278
                ++  +R  +A G KEV L  ++  ++G  IG       LL A       DG   +
Sbjct: 205 RRPGDILDEIRQCVAGGAKEVTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERV 261

Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
           R    +P    + +  IA +   P +   LH P+QSGSD +L AM R Y  + F  ++  
Sbjct: 262 RFTSPHPAAFTDDV--IAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 319

Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 398
           + E +P  QI+TDII GFPGET+EDF QT++++++ +F       + PRPGTPAA M+++
Sbjct: 320 IREAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAMEQI 379

Query: 399 PSAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWIT 433
           P  VV+ R   L ++ E  T       EGR   + IT
Sbjct: 380 PRDVVQDRFDRLVALQEQITEENLATFEGRDVEVMIT 416


>gi|254562377|ref|YP_003069472.1| tRNA modification enzyme MiaB [Methylobacterium extorquens DM4]
 gi|254269655|emb|CAX25627.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37
           tRNA methylthiolase [Methylobacterium extorquens DM4]
          Length = 446

 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 187/372 (50%), Gaps = 24/372 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           Y+K++GC  N  D+  MA  L+A GY+ TD  EEAD+ ++NTC ++  +   + + + + 
Sbjct: 5   YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 64

Query: 122 KSAK---------KPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
           +  K           +VVAGCV Q  G   L     V +V G Q   R+ +++ ++    
Sbjct: 65  RVLKGERAESGQDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 121

Query: 170 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
           E R++   + PA D    LP  R       L +  GC   C +C   + RG   S +V +
Sbjct: 122 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 180

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
           +V   R ++  GV+E+ L  ++  AY  D     P  L  ++  L    G   LR   ++
Sbjct: 181 VVDEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLRYTTSH 240

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           P    + L  IA    +P V  +LH+PVQSGSD +L AMNR +T   +R +++ +    P
Sbjct: 241 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDRILQAMNRRHTGDAYRRLIERIRNARP 298

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVV 403
            + +++D I GFPGETD DF +T+ L+ +  F      ++ PR GTPAA R   VP AV 
Sbjct: 299 DIALSSDFIVGFPGETDADFAETMRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPEAVK 358

Query: 404 KKRSRELTSVFE 415
            +R   L  + +
Sbjct: 359 TERLAALQDLLD 370


>gi|167745633|ref|ZP_02417760.1| hypothetical protein ANACAC_00325 [Anaerostipes caccae DSM 14662]
 gi|167654945|gb|EDR99074.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaerostipes caccae DSM
           14662]
          Length = 470

 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 112/370 (30%), Positives = 192/370 (51%), Gaps = 19/370 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T ++ TFGC  N+ DSE + G L   GY  TD +E AD+ L NTCTV+  + + +   + 
Sbjct: 34  TCHITTFGCQMNEKDSEKLLGVLETIGYRQTD-TEYADLVLFNTCTVRENANTKLYGHLG 92

Query: 120 KCKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLK-- 167
             K AK+      + + GC+ Q  + ++++         I G   I ++ E+++      
Sbjct: 93  HVKKAKEQNPEMIIGLCGCMMQEEQVVEKIRKSYPFVDLIFGTHNIFKLAELLKARADSG 152

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           G  V +         DLP  R+  F   + I  GC   C+YC   + RG   S   E ++
Sbjct: 153 GMIVDIWKDTDQIVEDLPSDRKFSFKCGVNIMFGCNNFCSYCIVPYVRGRERSRKPEDII 212

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 286
             +  ++ +GV+EV L  ++  +YG+++  + P+    ++ ++   +G   +R    +P 
Sbjct: 213 REIEGLVQEGVREVMLLGQNVNSYGKNL--DEPVSFAQLLQKIEQIEGLARIRFMTPHPK 270

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
            + + L E+    +  C +  +H+PVQSGS  +L  MNR YT   +  + + + E +PG+
Sbjct: 271 DLSDELIEVMASSKKICRH--MHLPVQSGSSRILKKMNRHYTKESYLALAEKIKEKIPGI 328

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
            + TDII GFPGET+EDF +T++++++ KF   +   +  R GTPAA M+ +V   VVKK
Sbjct: 329 AMTTDIIVGFPGETEEDFEETLDVVRKVKFDSAYTFVYSKRTGTPAASMEDQVEPEVVKK 388

Query: 406 RSRELTSVFE 415
           R   L  V +
Sbjct: 389 RFSRLLEVIK 398


>gi|443326848|ref|ZP_21055489.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Xenococcus sp. PCC 7305]
 gi|442793564|gb|ELS03010.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Xenococcus sp. PCC 7305]
          Length = 446

 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 184/355 (51%), Gaps = 18/355 (5%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           TFGC  N++DSE MAG L    +  T+   +AD+ L NTCT++  ++  + + + +    
Sbjct: 12  TFGCQMNKADSERMAGILEEMDFQWTEEPNDADLVLYNTCTIRDNAEQKVYSYLGRQAKR 71

Query: 125 K--KP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
           K  KP   LVVAGCV Q  G + L+ +  + +V G Q  +R+ +++++   G++V     
Sbjct: 72  KHQKPDLTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVATEP 131

Query: 177 KKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
             +   D+ K RR+ K    + I  GC   C+YC   + RG   S T E++   +  +  
Sbjct: 132 IHI-VEDITKPRRDSKVTAWVNIIYGCNERCSYCVVPNVRGTEQSRTPEAIKSEMSDIGK 190

Query: 236 DGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
            G KE+ L  ++  AYGRD+      G +   L + +      +    +R   ++P +  
Sbjct: 191 QGYKEITLLGQNIDAYGRDLPGSTPEGRHQHTLTDLLYYVHDVETVDRIRFATSHPRYFT 250

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           E L +  + L  P V    H+P QSG + +L AM R YT   +R ++D +   +P   I+
Sbjct: 251 ERLIKACQEL--PKVCEHFHIPFQSGDNEILKAMKRGYTHEKYRRIIDKIRHYMPDAAIS 308

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
            D I GFPGET+E FN T+ L+++  F  ++ + + PRPGTPAA  +   S  VK
Sbjct: 309 ADAIVGFPGETEEQFNNTLKLVEDIGFDLINTAAYSPRPGTPAALWEDQLSEEVK 363


>gi|357039505|ref|ZP_09101298.1| RNA modification enzyme, MiaB family [Desulfotomaculum gibsoniae
           DSM 7213]
 gi|355357868|gb|EHG05638.1| RNA modification enzyme, MiaB family [Desulfotomaculum gibsoniae
           DSM 7213]
          Length = 456

 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 124/369 (33%), Positives = 188/369 (50%), Gaps = 23/369 (6%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           + + + T GC  NQ +S  +       GY + D    AD+++INTCTV          LI
Sbjct: 4   KKVALTTLGCKVNQYESAALEELFRRRGYQVVDFDSPADVYIINTCTVTHLGDRKSRQLI 63

Query: 119 AKCKSAKKPLVVA--GCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLL 174
            +        VVA  GC  Q + D +  +EGV  +VG      +V++VE   KG +V+ +
Sbjct: 64  RRAGRTNPEAVVAVTGCYAQTAPDEVLNVEGVDLVVGAGHRAEIVDLVENVSKGRKVKAV 123

Query: 175 HR-------KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
                    ++LP     +  + +    L I  GC   C+YC   +ARG L S + E+++
Sbjct: 124 EDIARCHDFEELPG----ESHQGRVRAFLKIQEGCENYCSYCIIPYARGPLRSRSPENVL 179

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
             VR ++  G KEV L+   TGAYGR    GV+L  LL A++A +P  G   LR+    P
Sbjct: 180 AGVRNLVESGFKEVVLTGIHTGAYGRGNQDGVDLVGLL-ALLANVP--GLVRLRLSSLEP 236

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             I   L ++      P     LH+P+QSG D +L  M R Y  + FR ++ ++ + +P 
Sbjct: 237 NDITPDLLDLMAA--GPPFCRHLHIPLQSGDDYILKRMRRRYDTNYFRRLLASVRDKLPE 294

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
           + I TDI+ GFPGE DE F      +KE +F  +H+ ++ PR GTPAA    +V   V +
Sbjct: 295 VGITTDIMVGFPGEEDEHFRNGCTFVKEMQFSALHVFKYSPRRGTPAAGFPDQVDPRVKE 354

Query: 405 KRSRELTSV 413
           +RSR+L +V
Sbjct: 355 ERSRKLIAV 363


>gi|238019340|ref|ZP_04599766.1| hypothetical protein VEIDISOL_01204 [Veillonella dispar ATCC 17748]
 gi|237864039|gb|EEP65329.1| hypothetical protein VEIDISOL_01204 [Veillonella dispar ATCC 17748]
          Length = 431

 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 182/359 (50%), Gaps = 15/359 (4%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T+   T GC  NQ D++ M G      Y   D  E+ADI++INTC+V +  +     LI
Sbjct: 2   KTVAFTTLGCRVNQYDTDAMKGLFLQNNYEAVDFDEKADIYVINTCSVTNMGEKKSRQLI 61

Query: 119 AKCKSAKKP--LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHE---- 170
            K K   +   ++V GC  Q   D +  ++GV++V G     ++VE+VE+ L+  E    
Sbjct: 62  RKAKRQNEDAYVIVTGCYAQLDPDAIAAIDGVNLVIGTNNRSKIVELVEQ-LESTERQIN 120

Query: 171 -VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
            VR +++      + L     +K    + I  GC   C +C   + RG L S  V+ +V 
Sbjct: 121 AVRDIMNESNFEEMPLYGNESDKARAFMKIQEGCNNYCAFCIIPYTRGKLKSRKVDDIVQ 180

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
             + ++  G  E+ L+    G YG ++    P L + + A L       +R G      +
Sbjct: 181 EAKRLVEHGFHEIVLTGIHLGNYGVELP-GRPTLADVVKALLEIPDLYRIRFGSIESVEV 239

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+    +  C +  LH+P+Q+GSD VL  M R YTL +++ ++ +L   +  + I
Sbjct: 240 SDELVELMATNKRVCPH--LHLPLQAGSDHVLKLMKRHYTLQEYKDLIASLRSRIKDLSI 297

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 406
            TDII GFP ETDEDF +T+N ++E  F  +H   +  R GTPAA M  +VP AV K R
Sbjct: 298 TTDIIAGFPQETDEDFEETLNTVREIGFTHIHAFPYSIREGTPAATMPDQVPEAVKKTR 356


>gi|428223576|ref|YP_007107673.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geitlerinema sp. PCC
           7407]
 gi|427983477|gb|AFY64621.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geitlerinema sp. PCC
           7407]
          Length = 450

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/396 (31%), Positives = 204/396 (51%), Gaps = 31/396 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  +++  +A + L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEEMGFEFSEDPNDASVILYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K       L+VAGCV Q  G   L+ +  + +V G Q  +R+ +++E+   G++V  
Sbjct: 69  ARRKHDDPNLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLEQVFDGNQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
               ++   D+ K RR+  V    +NV  GC   CTYC     RG   S T E++   + 
Sbjct: 129 TEPIQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPGVRGLEQSRTPEAIRAEME 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
            +   G KEV L  ++  AYGRD+      G +   L + +  V ++P  G   +R   +
Sbjct: 187 ALSRQGYKEVTLLGQNIDAYGRDLPGATPEGRHQHTLTDLLYFVHDVP--GIERIRFATS 244

Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
           +P +  E L +  AE+   P V    H+P QSG + VL AM R YT+  +R ++  + E 
Sbjct: 245 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNDVLKAMARGYTVEKYRRIIQMIREY 301

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
           +P   I+ D I GFPGET+E F  T+ L+ +  F  ++ + + PRPGTPAA  +   S  
Sbjct: 302 MPDASISADAIVGFPGETEEQFENTLKLVDDIGFDLLNTAAYSPRPGTPAATWEGQLSEE 361

Query: 403 VK----KRSRELTSVFEAFTPYLGMEGRVERIWITE 434
           VK    +R   L SV +A    L  + R+E + + +
Sbjct: 362 VKADRLQRLNHLVSV-KAAERSLRYQDRIEEVLVED 396


>gi|385799932|ref|YP_005836336.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halanaerobium praevalens
           DSM 2228]
 gi|309389296|gb|ADO77176.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halanaerobium praevalens
           DSM 2228]
          Length = 443

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/366 (33%), Positives = 186/366 (50%), Gaps = 24/366 (6%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T+GC  N+ DSE +AG L   GY  TD  E ADI L+NTC ++  ++  +   + + K  
Sbjct: 11  TYGCQMNKHDSERLAGMLEEMGYQPTDKYENADIILLNTCIIRENAELKVFGKLGELKRY 70

Query: 125 KKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE--VR 172
           K+      + + GC+ Q    + E+         I G   I  + +++ +  K  +  V 
Sbjct: 71  KRENPDLIIGIGGCMMQQDEPVDEVYKKYRHVDLIFGTHNIHHLPDLINKIEKTRDRVVE 130

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           +   ++    DLP  R+++    + I  GC   CTYC   + RG   S  + S+V     
Sbjct: 131 VWDEEEGLIPDLPSQRKSEHSAWISIIQGCDNFCTYCIVPYVRGRERSRPLTSIVKEAEK 190

Query: 233 VIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPP--FI 288
           + ADGVKE+ L  ++  +YG D+      P LL    AEL           MT+ P  F 
Sbjct: 191 LAADGVKEITLLGQNVNSYGNDLEKETTFPKLL----AELNKVQKLKRIRFMTSHPRDFS 246

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            E L++IAE+ +   V + +H+P+QSGS+ VL  MNR YT   +   V+ + + +P   +
Sbjct: 247 DELLEKIAELDK---VANHIHLPIQSGSNKVLKQMNRGYTREYYIERVEKIRKEMPHASV 303

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKKRS 407
           +TD I GFPGET+ DF QT+NL+KE  F   +   + PR GTPAA R  ++   V KKR 
Sbjct: 304 STDFIVGFPGETEADFEQTINLVKELNFDMAYTFIYSPRSGTPAASRKDQIDEEVKKKRL 363

Query: 408 RELTSV 413
           + L  +
Sbjct: 364 KTLMDL 369


>gi|402829205|ref|ZP_10878081.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Slackia sp. CM382]
 gi|402284186|gb|EJU32689.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Slackia sp. CM382]
          Length = 454

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/381 (32%), Positives = 187/381 (49%), Gaps = 27/381 (7%)

Query: 54  KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
           +I   +T Y  T+GC  N+ DSE +AG L + G       EE++I +  TC V+  +   
Sbjct: 5   EILTNKTFYTFTYGCQMNEHDSERIAGLLESCGCVPVSTLEESEIVIFMTCCVRERADIR 64

Query: 114 MDTLIAKCKSA---------KKPLVVAGCVPQGSRD----LKELEGVSIV-GVQQIDRVV 159
           +   ++  K           K+ + + GC+  G RD     + L+ V +V G Q I+R+ 
Sbjct: 65  LMGQVSTIKGVPLPEGSALDKRIVCIGGCI--GQRDGVALTETLDNVDVVFGTQNIERLP 122

Query: 160 EVVEETLK--GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 217
            ++   L   GH V +       + DLP  R   +   LPI VGC   CT+C   + RG 
Sbjct: 123 YLITGVLSQGGHFVEIEQDSDSFSTDLPSDREKPWSAWLPITVGCDNFCTFCIVPYVRGR 182

Query: 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGS 275
             S T+E +V      +A+GVKE+ L  ++  +YGRD+        +L A+ A     G 
Sbjct: 183 ERSRTIEDVVTNAEAYVAEGVKEITLLGQNVNSYGRDLYGSPRFADVLKAVAAT----GV 238

Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
             LR   ++P  + + +  IA       +   LH+PVQSGSD VL  MNR Y  + +  +
Sbjct: 239 ERLRFATSHPKDLTDEV--IAAFGELGNLMPALHLPVQSGSDRVLEDMNRTYDSAHYLGL 296

Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395
           V  L    P + ++TD+I GFPGET+EDF  T +LI+   + QV    +  R GTPAA M
Sbjct: 297 VRKLRASCPDIALSTDVIVGFPGETEEDFQATYDLIESVGYSQVFTFIYSRREGTPAADM 356

Query: 396 -KKVPSAVVKKRSRELTSVFE 415
               P  V+++R   L  + +
Sbjct: 357 FDDTPRDVIQRRFDRLVELVQ 377


>gi|332710909|ref|ZP_08430845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Moorea producens 3L]
 gi|332350223|gb|EGJ29827.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Moorea producens 3L]
          Length = 448

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 124/397 (31%), Positives = 207/397 (52%), Gaps = 33/397 (8%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  ++N  EAD+ + NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEDIGFQWSENPNEADLIVYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K       LVVAGCV Q  G   L+ +  V +V G Q  +R+ +++++   G++  L
Sbjct: 69  AKRKHQQPDLTLVVAGCVAQQEGEALLRRVPEVDLVMGPQHANRLGDLLDQVFDGNQ--L 126

Query: 174 LHRKKLPAL-DLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
           +  + +  + D+ K RR+  +   + I  GC   C+YC   + RG   S T E++   + 
Sbjct: 127 VATEPIHIVEDITKPRRDSSISAWVNIIYGCNERCSYCVVPNVRGLEQSRTPEAIRAEME 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
            +   G KE+ L  ++  AYGRD+      G +   L + +  V+ +P  G   LR   +
Sbjct: 187 ELGRLGYKEITLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYYVSNVP--GIERLRFATS 244

Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           +P + +E L      L  P V    H+P QSG + +L AM R YT   +R +++T+ + +
Sbjct: 245 HPRYFVERLIRACHEL--PEVCEHFHIPFQSGDNDILKAMARGYTHQKYRRIINTIRDYM 302

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
           P   I+ D I GFPGET+  F  T+ L+++  F Q++ + + PRPGTPAA  +   S  V
Sbjct: 303 PDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPAALWENQLSEEV 362

Query: 404 K----KRSRELTSV--FEAFTPYLGMEGRVERIWITE 434
           K    +R   L +V   E    YL   GR+E + + +
Sbjct: 363 KCDRLQRLNHLVAVKAAERSQRYL---GRIEEVLVED 396


>gi|384198975|ref|YP_005584718.1| hypothetical protein [Bifidobacterium longum subsp. infantis ATCC
           15697 = JCM 1222]
 gi|320457927|dbj|BAJ68548.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697 = JCM 1222]
          Length = 480

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 195/397 (49%), Gaps = 27/397 (6%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTD--NSEEADIWLINTCTVKSPSQS 112
           G    ++ T GC  N  DSE +AG L A GY  A  D  N  + D+ ++NTC V+  +  
Sbjct: 23  GKGVFHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQINDNDLDLLVLNTCAVRENAAE 82

Query: 113 AMDTLIAKCKSAK--KP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVV 162
            M   I +    K  +P   + V GC+ Q  R  K++   +     + G + I+ + +++
Sbjct: 83  RMYGTIGRFNRVKLVRPNLQIAVGGCMAQLDR--KKIADTAPWVSAVFGTKNIEDLPKLL 140

Query: 163 EETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
           ++     + ++   ++L      LP  R ++    + I+VGC   CT+C     RG    
Sbjct: 141 DQNRATGKAQVQVTEQLRQFPSQLPAARASRISSWVAISVGCNNTCTFCIVPTTRGKEKD 200

Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTML 278
                ++  +R  +A G KEV L  ++  ++G  IG       LL A       DG   +
Sbjct: 201 RRPGDILDEIRQCVAGGAKEVTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERV 257

Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
           R    +P    + +  IA +   P +   LH P+QSGSD +L AM R Y  + F  ++  
Sbjct: 258 RFTSPHPAAFTDDV--IAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 315

Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 398
           + E +P  QI+TDII GFPGET+EDF QT++++++ +F       + PRPGTPAA M+++
Sbjct: 316 IREAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAMEQI 375

Query: 399 PSAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWIT 433
           P  VV+ R   L ++ E  T       EGR   + IT
Sbjct: 376 PRDVVQDRFDRLVALQEQITEENLATFEGRDVEVMIT 412


>gi|395776016|ref|ZP_10456531.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           acidiscabies 84-104]
          Length = 495

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/374 (31%), Positives = 190/374 (50%), Gaps = 16/374 (4%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQSAMD 115
            +T  ++T+GC  N  DSE +AG L   GY  A   +  +AD+ + NTC V+  + + + 
Sbjct: 3   AKTYEVRTYGCQMNVHDSERLAGLLEGAGYVRAPEGSDGDADVVVFNTCAVRENADNRLY 62

Query: 116 TLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLK 167
             + +   + A +P   + V GC+ Q  RD  +K+   V +V G   I ++  ++E    
Sbjct: 63  GNLGRLAPRKASRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARV 122

Query: 168 GHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
             E ++   + L A    LP  R + +   + I+VGC   CT+C     RG         
Sbjct: 123 QEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGD 182

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
           ++  +  ++ +GV E+ L  ++  AYG DIG +       + A    +G   +R    +P
Sbjct: 183 ILAEIEALVGEGVTEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERVRFTSPHP 241

Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
               + +  IA +   P V   LH+P+QSGSD VL AM R Y    +  +++ +   +P 
Sbjct: 242 RDFTDDV--IAAMAETPNVMPQLHMPMQSGSDTVLKAMRRSYRQERYLGIIEKVRAAIPH 299

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
             I+TDII GFPGET+EDF QT++ ++E +F Q    Q+  RPGTPAA M+ ++P  VV+
Sbjct: 300 AAISTDIIVGFPGETEEDFEQTLHAVREARFAQAFTFQYSKRPGTPAATMENQIPKEVVQ 359

Query: 405 KRSRELTSVFEAFT 418
            R   L ++ E  +
Sbjct: 360 ARYERLVALQEEIS 373


>gi|434394557|ref|YP_007129504.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Gloeocapsa sp. PCC 7428]
 gi|428266398|gb|AFZ32344.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Gloeocapsa sp. PCC 7428]
          Length = 453

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 190/362 (52%), Gaps = 26/362 (7%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  +++  +AD+ L NTCT++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEDMGFEWSEDPYQADLVLYNTCTIRDNAEQKVYSYLGRQ 68

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K       LVVAGCV Q  G   L+ +  + +V G Q  +R+ +++E+   G+++  
Sbjct: 69  AKRKHEHPELTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLQDLLEQVFAGNQIVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                +   D+ K RR+  V    +NV  GC   CTYC   + RG   S T E++   + 
Sbjct: 129 TEPIHI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMV 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
            +   G KEV L  ++  AYGRD+      G +L  L + +  V ++P  G   LR   +
Sbjct: 187 ELGRQGFKEVTLLGQNIDAYGRDLPGATPEGRHLHTLTDLLYYVHDVP--GIERLRFATS 244

Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
           +P +  E L +  AE+   P V    H+P QSG + VL  M+R YT   +R ++DT+   
Sbjct: 245 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNEVLKQMSRGYTQEKYRRIIDTIRRY 301

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
           +P   I+ D I GFPGET+  F  T+ L+ +  F  ++ + + PRPGTPAA  +   S  
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLVDDIGFDHLNTAAYSPRPGTPAAVWENQLSEE 361

Query: 403 VK 404
           VK
Sbjct: 362 VK 363


>gi|325847803|ref|ZP_08170025.1| tRNA methylthiotransferase YqeV [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480821|gb|EGC83874.1| tRNA methylthiotransferase YqeV [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 432

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 199/392 (50%), Gaps = 41/392 (10%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
           ++T  +KT GC  NQ +SE +       G+   +++  ADI++INTCTV + S       
Sbjct: 2   SKTFNIKTLGCKVNQYESEAIEELFKKRGFEKKEDN--ADIYVINTCTVTNMSDRKSRQT 59

Query: 118 IAKCKSAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
           I+K +   K  ++A  GC  Q   D +KE+EGV IV G +  + VV++ E  +  H    
Sbjct: 60  ISKARKENKDAIIAVIGCYSQVKGDEVKEIEGVDIVLGSRNKEEVVDLCENFINDH---- 115

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV-------------GCLGACTYCKTKHARGHLGS 220
                +   D+ + +  + +E L I+              GC   C+YC   +ARG++ S
Sbjct: 116 -----VKTKDVEEFKIGEAIEDLEISNQADMTRAYIKIQDGCNMYCSYCLIPYARGNIAS 170

Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
             + S++   + +  +G KE+ L+     +YG+D+ +N+  L++ I      DG   +R+
Sbjct: 171 RDLVSIIDEAKRLRDNGFKEIVLTGIHVASYGKDLDLNIS-LIDVIEHISKIDGIERIRL 229

Query: 281 GMTNPPFI----LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
               P  I    L+ +K+  +   H       H+ +QSGSD VL  MNR+Y    F+  V
Sbjct: 230 SSMEPRHIDREFLQRMKDTKKACDH------FHLSLQSGSDDVLKLMNRKYDTKIFKEKV 283

Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396
           D + E  P   + TDII GFP E++++  QT + +++ KF + H+ ++  R GT AA MK
Sbjct: 284 DLIREYFPNAGLTTDIIVGFPNESEKNHEQTKDFVRDIKFSKTHLFKYSKRDGTKAASMK 343

Query: 397 -KVPSAVVKKRSRELTSVFEAFTPYLGMEGRV 427
            +V     K+RS+EL SV E    +  ++ ++
Sbjct: 344 DQVDGNTKKRRSKEL-SVIEKKNSHEFLDNQI 374


>gi|407795674|ref|ZP_11142632.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salimicrobium
           sp. MJ3]
 gi|407020015|gb|EKE32729.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salimicrobium
           sp. MJ3]
          Length = 518

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 198/387 (51%), Gaps = 28/387 (7%)

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
           ++T+GC  N+ D+E MAG     GY  T  +EEADI L+NTC ++  +++ +   I   K
Sbjct: 79  IRTYGCQMNEHDTEVMAGIFETMGYEPTKQAEEADIILLNTCAIRENAENKVFGEIGHLK 138

Query: 123 SAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
           S K+      L V GC+ Q     +R L++   + ++ G   I ++ E+++E +   E  
Sbjct: 139 SLKRENPDLILGVCGCMAQEEGVVNRILQKHPFIDMIFGTHNIHKIPELLKEAMFSKEMV 198

Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           + +  ++     +LP+ R+ K    + +  GC   CTYC   + RG   S   E ++  V
Sbjct: 199 IDVWSKEGDIIENLPRSRKGKIKAWVNVMYGCDKFCTYCIVPYTRGKERSRLPEDIIQEV 258

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           R + A G KEV L  ++  AYG+D+  +L   L  ++ +L       +R   ++P    +
Sbjct: 259 RHLAAQGYKEVTLLGQNVNAYGKDL--DLDYGLGDLMDDLHKIDIPRVRFTTSHPRDFDD 316

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
            L E+  + +   +   +H+PVQSGS  VL  M R+Y+  D+  +V  +   +P   + T
Sbjct: 317 RLIEV--LAKGGNMLDHIHLPVQSGSSDVLKIMGRKYSREDYMELVRKIRAAMPDATLTT 374

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS---------- 400
           DII GFP ET+E F +T++L++E  F   +   F PR  TPAA+M+   S          
Sbjct: 375 DIIVGFPNETEEQFQETLSLVEEVGFEAAYTFIFSPRENTPAAKMRDKVSMEEKKERLQR 434

Query: 401 --AVVKKRSRELTSVFEAFTPYLGMEG 425
             A++ K++RE    +E    ++ +EG
Sbjct: 435 LNALINKQARETMETYENEIVHVLVEG 461


>gi|154488819|ref|ZP_02029668.1| hypothetical protein BIFADO_02127 [Bifidobacterium adolescentis
           L2-32]
 gi|154082956|gb|EDN82001.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium
           adolescentis L2-32]
          Length = 484

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 124/395 (31%), Positives = 194/395 (49%), Gaps = 23/395 (5%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE----EADIWLINTCTVKSPSQS 112
           G    Y+ T GC  N  DSE +AG L A GY      +    + D+ ++NTC V+  +  
Sbjct: 27  GKGVFYVHTLGCQMNVHDSERIAGVLEADGYVPATEEQYLNHDIDLIVMNTCAVRENAAE 86

Query: 113 AMDTLIAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEE 164
            M   I      K+      + V GC+ Q  R+   K+   V ++ G + I  + +++++
Sbjct: 87  RMYGTIGLWAELKRERPNLQIAVGGCMAQLDREKIAKKAPWVDAVFGTKNIGSLPQLLDQ 146

Query: 165 T-LKGH-EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
             ++GH +V++          LP  R +K    + I+VGC   CT+C     RG      
Sbjct: 147 ACIEGHAQVKVQEELNYFPSQLPTDRASKVSSWVAISVGCNNTCTFCIVPTTRGKEHDRR 206

Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRI 280
              ++  +R  + +G KEV L  ++  ++G  IG       LL A   E+  DG   +R 
Sbjct: 207 PGDILAEIRQCVDEGAKEVTLLGQNVNSFGYGIGDRFAFSKLLRA-CGEI--DGLERVRF 263

Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
              +P    + +  IA +   P V   LH P+QSGSD +L AM R Y  + F  ++  + 
Sbjct: 264 TSPHPAAFTDDV--IAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRKIR 321

Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 400
           E +P  QI+TDII GFPGET+EDF +T+ +++E +F       + PRPGTPAA M++VP 
Sbjct: 322 EAMPDAQISTDIIVGFPGETEEDFQETLRVVEEARFASAFTFIYSPRPGTPAAEMEQVPH 381

Query: 401 AVVKKRSRELTSVFEAFTP--YLGMEGRVERIWIT 433
            VV+ R   L ++ E  T       EGR   + +T
Sbjct: 382 DVVQDRFERLVALQERITEENLKTFEGRDVEVMVT 416


>gi|218531460|ref|YP_002422276.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Methylobacterium extorquens CM4]
 gi|218523763|gb|ACK84348.1| RNA modification enzyme, MiaB family [Methylobacterium extorquens
           CM4]
          Length = 462

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 187/372 (50%), Gaps = 24/372 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           Y+K++GC  N  D+  MA  L+A GY+ TD  EEAD+ ++NTC ++  +   + + + + 
Sbjct: 21  YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 80

Query: 122 KSAK---------KPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
           +  K           +VVAGCV Q  G   L     V +V G Q   R+ +++ ++    
Sbjct: 81  RVLKGDRAESGQETRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 137

Query: 170 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
           E R++   + PA D    LP  R       L +  GC   C +C   + RG   S +V +
Sbjct: 138 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 196

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
           +V   R ++  GV+E+ L  ++  AY  D     P  L  ++  L    G   LR   ++
Sbjct: 197 VVEEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGQLMDALSAVPGLLRLRYTTSH 256

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           P    + L  IA    +P V  +LH+PVQSGSD +L AMNR +T   +R +++ +    P
Sbjct: 257 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRNARP 314

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVV 403
            + +++D I GFPGETD DF +T+ L+ +  F      ++ PR GTPAA R   VP AV 
Sbjct: 315 DIALSSDFIVGFPGETDADFAETLRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPEAVK 374

Query: 404 KKRSRELTSVFE 415
            +R   L  + +
Sbjct: 375 TERLAALQDLLD 386


>gi|123966699|ref|YP_001011780.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9515]
 gi|229890602|sp|A2BY12.1|MIAB_PROM5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123201065|gb|ABM72673.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
           9515]
          Length = 464

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 196/393 (49%), Gaps = 26/393 (6%)

Query: 45  LSKTGSLSPKIPGTETI---YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101
           L+KT     K P  E+I   ++ TFGC  N++DSE MAG L   GY+   +  +AD+ L 
Sbjct: 2   LTKTIQEEKKTPKDESIGSYWITTFGCQMNKADSERMAGTLEKMGYSRAIDELKADLVLY 61

Query: 102 NTCTVKSPSQSAMDTLIAKCKSAKKPL-----VVAGCVPQGS-----RDLKELEGVSIVG 151
           NTCT++  +Q  + + + +    K  L     VVAGC+ Q       R + EL+   I+G
Sbjct: 62  NTCTIRDSAQQKVYSFLGRQIKRKHSLPKLKLVVAGCLAQQEGESLLRRVPELD--LIMG 119

Query: 152 VQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFV-EILPINVGCLGACTYCK 210
            Q ++ +  ++E    G++V +   +   + D+   RR+  +   + I  GC   C+YC 
Sbjct: 120 PQHVNNLENLLERVDSGNQV-VATEETFISEDITNARRDSTICGWVNIIYGCNERCSYCV 178

Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLN 264
               RG   S   +++   ++T+  +  KE+ L  ++  AYGRD+      G     L +
Sbjct: 179 VPSVRGKEQSRYPKAIKSEIQTLAQNNYKEITLLGQNIDAYGRDLPVTTKEGRKENTLTD 238

Query: 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 324
            +      DG   +R   ++P +  + L +    L   C +   H+P QSG+D +L  M 
Sbjct: 239 LLYFIHDVDGIRRIRFSTSHPKYFSKRLIKACYELDKVCEH--FHIPFQSGNDEILRLMA 296

Query: 325 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384
           R YT+  ++ +++ +  L+P   I  D I  FPGET++ +  T+ LI +  F QV  + +
Sbjct: 297 RGYTIDKYKKIIENIRSLMPNASITADAIVAFPGETEKQYQDTLRLISDVGFDQVMTAAY 356

Query: 385 YPRPGTPAARM-KKVPSAVVKKRSRELTSVFEA 416
            PRP TPAA    ++   V K+R +E+  + EA
Sbjct: 357 SPRPNTPAAIWNNQIAEEVKKERLKEINELVEA 389


>gi|404329066|ref|ZP_10969514.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Sporolactobacillus vineae DSM 21990 = SL153]
          Length = 495

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 189/368 (51%), Gaps = 15/368 (4%)

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
           ++T+GC  N++DSE MAG L A GY  T+++  AD+ L+NTC ++  +++ +   I + K
Sbjct: 54  IETYGCQMNEADSEVMAGILEAMGYRPTEDAALADVILVNTCAIRENAENRVFGHIGRMK 113

Query: 123 SAK--KPLVV---AGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
             K  KP ++    GC+ Q     ++ L+    V ++ G   I R+ ++++E L   E  
Sbjct: 114 PLKLEKPGLIIGLCGCMAQEETVVNKVLRTYPQVDLIFGTHNIHRLPQLLQEALFSKEMV 173

Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           V +  ++     +LP  R   F   + I  GC   CTYC   + RG   S   E ++  V
Sbjct: 174 VEVWSKEGDIVENLPVARHGHFQAWVNIMFGCDKFCTYCIVPYTRGKERSRRPEEIISEV 233

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           R +   G KEV L  ++  AYG+D+       L  ++ E+   G   +R   ++P    +
Sbjct: 234 RDLARRGYKEVTLLGQNVNAYGKDLKDLDHYGLGNLMDEIRKIGIPRVRFMTSHPKDFDD 293

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
           HL E+     + C +  +H+PVQSG+  +L  M R YT   +  +   +   VP     T
Sbjct: 294 HLIEVLGKGGNLCEH--IHLPVQSGNSDILKIMGRGYTRERYLDLFHKIKNTVPNAAFTT 351

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
           DII GFP ET+  F  T++L+KE +F   +   + PR GTPAARMK  +P  V K+R + 
Sbjct: 352 DIIVGFPNETEAQFEDTLSLVKECRFDGAYTFIYSPRAGTPAARMKDNIPMEVKKERLQR 411

Query: 410 LTSVFEAF 417
           L  + + +
Sbjct: 412 LNRLIDQY 419


>gi|119026050|ref|YP_909895.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Bifidobacterium adolescentis ATCC 15703]
 gi|229890431|sp|A1A280.1|MIAB_BIFAA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|118765634|dbj|BAF39813.1| hypothetical protein BAD_1032 [Bifidobacterium adolescentis ATCC
           15703]
          Length = 480

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 124/395 (31%), Positives = 194/395 (49%), Gaps = 23/395 (5%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE----EADIWLINTCTVKSPSQS 112
           G    Y+ T GC  N  DSE +AG L A GY      +    + D+ ++NTC V+  +  
Sbjct: 23  GKGVFYVHTLGCQMNVHDSERIAGVLEADGYVPATEEQYLNHDIDLIVMNTCAVRENAAE 82

Query: 113 AMDTLIAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEE 164
            M   I      K+      + V GC+ Q  R+   K+   V ++ G + I  + +++++
Sbjct: 83  RMYGTIGLWAELKRERPNLQIAVGGCMAQLDREKIAKKAPWVDAVFGTKNIGSLPQLLDQ 142

Query: 165 T-LKGH-EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
             ++GH +V++          LP  R +K    + I+VGC   CT+C     RG      
Sbjct: 143 ARIEGHAQVKVQEELNYFPSQLPTDRASKVSSWVAISVGCNNTCTFCIVPTTRGKEHDRR 202

Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRI 280
              ++  +R  + +G KEV L  ++  ++G  IG       LL A   E+  DG   +R 
Sbjct: 203 PGDILAEIRQCVDEGAKEVTLLGQNVNSFGYGIGDRFAFSKLLRA-CGEI--DGLERVRF 259

Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
              +P    + +  IA +   P V   LH P+QSGSD +L AM R Y  + F  ++  + 
Sbjct: 260 TSPHPAAFTDDV--IAAMAETPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRKIR 317

Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 400
           E +P  QI+TDII GFPGET+EDF +T+ +++E +F       + PRPGTPAA M++VP 
Sbjct: 318 EAMPDAQISTDIIVGFPGETEEDFQETLRVVEEARFASAFTFIYSPRPGTPAAEMEQVPH 377

Query: 401 AVVKKRSRELTSVFEAFTP--YLGMEGRVERIWIT 433
            VV+ R   L ++ E  T       EGR   + +T
Sbjct: 378 DVVQDRFERLVALQERITEENLKTFEGRDVEVMVT 412


>gi|290968596|ref|ZP_06560134.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera genomosp.
           type_1 str. 28L]
 gi|335049650|ref|ZP_08542637.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Megasphaera sp. UPII
           199-6]
 gi|290781249|gb|EFD93839.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera genomosp.
           type_1 str. 28L]
 gi|333762385|gb|EGL39883.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Megasphaera sp. UPII
           199-6]
          Length = 442

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/367 (32%), Positives = 185/367 (50%), Gaps = 24/367 (6%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           + G +  Y+ T+GC  N SDSE  AGQL A GY LT+  + AD+ L+NTC V+  ++   
Sbjct: 3   VLGNKFAYIATYGCQMNSSDSERYAGQLEALGYRLTEEMDVADVILLNTCCVRETAEGKT 62

Query: 115 DTLIAKCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETL 166
              I + K  K+      + V GC+ Q    R  +    + +V G   I ++  +++E  
Sbjct: 63  LGKIGELKHYKERNPELVIAVTGCMAQEWQERLFERAPHIDLVIGTHNIHKLTALLQERQ 122

Query: 167 KGHEVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
                 L     LPA  DLP  R +KF   +PI  GC   CTYC   H RG   S  V  
Sbjct: 123 GKSGHALAADMSLPAFHDLPTKRFHKFFAWVPIMNGCNKFCTYCIVPHVRGREVSRPVAE 182

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMT 283
           +V  V  +  DG KEV L  ++  +YG D+  G +   L+ A+  E  P G   +R   +
Sbjct: 183 IVREVAQLGKDGYKEVTLLGQNVNSYGLDLRDGTDFGTLVEAL--ETVP-GVERIRYMTS 239

Query: 284 NP----PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
           +P    P +++ +   + V+ H      LH+P+QSGS+A+L  MNR YT+  +  ++   
Sbjct: 240 HPKDMTPAMIDAIAAGSRVVHH------LHLPIQSGSNAMLKRMNRGYTVEHYLDLIAYA 293

Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 399
            + +  + + TD+I GFPGET+  F +T+ LI++  +   +   + PR GTPAA      
Sbjct: 294 RKKMSDLVLTTDLIVGFPGETEAMFQETLQLIRQVGYDMAYTFIYSPRTGTPAATWPDQV 353

Query: 400 SAVVKKR 406
           +A  K R
Sbjct: 354 AAAEKSR 360


>gi|29829021|ref|NP_823655.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           avermitilis MA-4680]
 gi|81720067|sp|Q82KC4.1|MIAB_STRAW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|29606127|dbj|BAC70190.1| putative methylase of isopentenylated A37 derivatives in tRNA
           [Streptomyces avermitilis MA-4680]
          Length = 508

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 189/375 (50%), Gaps = 16/375 (4%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSE-EADIWLINTCTVKSPSQSAM 114
           G +T  ++T+GC  N  DSE ++G L   GY    D S+ +AD+ + NTC V+  + + +
Sbjct: 11  GVKTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPDGSDGDADVVVFNTCAVRENADNRL 70

Query: 115 DTLIAKCK--SAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL 166
              + +      K+P   + V GC+ Q  RD  + +   V +V G   I ++  ++E   
Sbjct: 71  YGNLGRLAPMKTKRPGMQIAVGGCLAQKDRDTIVTKAPWVDVVFGTHNIGKLPVLLERAR 130

Query: 167 KGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
              E ++   + L A    LP  R + +   + I+VGC   CT+C     RG        
Sbjct: 131 VQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTG 190

Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
            ++  +  ++ +GV E+ L  ++  AYG DIG +       + A    DG   +R    +
Sbjct: 191 DILAEIEALVGEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGQIDGLERVRFTSPH 249

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           P    + +  IA +   P V   LH+P+QSGSD VL AM R Y    +  +++ +   +P
Sbjct: 250 PRDFTDDV--IAAMAETPNVMPQLHMPMQSGSDTVLKAMRRSYRQDRYLGIIEKVRAAIP 307

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
              I TDII GFPGET+EDF QT++ ++E +F Q    Q+  RPGTPAA M+ ++P  VV
Sbjct: 308 HAAITTDIIVGFPGETEEDFEQTMHAVREARFTQAFTFQYSKRPGTPAATMENQIPKEVV 367

Query: 404 KKRSRELTSVFEAFT 418
           + R   L ++ E  +
Sbjct: 368 QARYERLVALQEEIS 382


>gi|375084996|ref|ZP_09731789.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megamonas funiformis YIT
           11815]
 gi|374567645|gb|EHR38854.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megamonas funiformis YIT
           11815]
          Length = 440

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/356 (32%), Positives = 181/356 (50%), Gaps = 16/356 (4%)

Query: 66  FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
           +GC  N SD E  AGQL   GY   +  E ADI +INTC V+  ++  +   I + K  K
Sbjct: 14  YGCQMNFSDGERFAGQLERMGYKPAEKLENADIIIINTCCVRESAEKKIYGKIGEIKHLK 73

Query: 126 --KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL--KGHEVRLLH 175
             KP   L + GC+ Q   D   K+   V  V G  ++  +  V+EE    +GH V+L  
Sbjct: 74  QQKPDLILGITGCMAQKDGDAIFKKASHVDFVLGTNKMYDLPAVLEEIFASRGHIVKLAG 133

Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
              +P  ++     N     +PI  GC   CTYC   + RG   S   + +V  +  +  
Sbjct: 134 DYDMPP-NVEPAENNSLFAFVPIMYGCNNFCTYCIVPYVRGRERSRAPQEIVAEITKLAQ 192

Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
           +GVKEV L  ++  +YG+D        L A+V ++  +G   +R   ++P  + + + E 
Sbjct: 193 NGVKEVTLLGQNVNSYGKDRDDADFADLLAMVDKI--EGIERIRYMTSHPRDLTDKVIET 250

Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
            +  +H C +   H+PVQ G+D +L AMNR YT + ++ +V  +    P     TD+I G
Sbjct: 251 IKNSKHICEH--FHLPVQYGTDKMLKAMNRGYTTAYYKELVAKIRNQFPEASFTTDLIVG 308

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL 410
           FPGETDEDF Q +  +KE ++   +   +  R GTPAA M+ +VP  + K+R  +L
Sbjct: 309 FPGETDEDFAQMLEFLKEIRYDAAYTFLYSKRSGTPAATMENQVPQGLKKERLHKL 364


>gi|317472764|ref|ZP_07932076.1| MiaB family RNA modification enzyme [Anaerostipes sp. 3_2_56FAA]
 gi|316899756|gb|EFV21758.1| MiaB family RNA modification enzyme [Anaerostipes sp. 3_2_56FAA]
          Length = 470

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/370 (30%), Positives = 192/370 (51%), Gaps = 19/370 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T ++ TFGC  N+ DSE + G L   GY  TD +E AD+ L NTCTV+  + + +   + 
Sbjct: 34  TCHITTFGCQMNEKDSEKLLGVLETIGYRQTD-TEYADLVLFNTCTVRENANTKLYGHLG 92

Query: 120 KCKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLK-- 167
             K AK+      + + GC+ Q  + ++++         I G   I ++ E+++      
Sbjct: 93  HVKKAKEQNPEMIIGLCGCMMQEEQVVEKIRKSYPFVDLIFGTHNIFKLAELLKARADSG 152

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           G  V +         DLP  R+  F   + I  GC   C+YC   + RG   S   E ++
Sbjct: 153 GMIVDIWKDTDQIVEDLPSDRKFSFKCGVNIMFGCNNFCSYCIVPYVRGRERSRKPEDII 212

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 286
             +  ++ +GV+EV L  ++  +YG+++  + P+    ++ ++   +G   +R    +P 
Sbjct: 213 REIEGLVQEGVREVMLLGQNVNSYGKNL--DEPVSFAQLLQKIEQIEGLARIRFMTPHPK 270

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
            + + L E+    +  C +  +H+PVQSGS  +L  MNR YT   +  + + + E +PG+
Sbjct: 271 DLSDELIEVMASSKKICRH--MHLPVQSGSSRILKKMNRHYTKESYLALAEKIKEKIPGI 328

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
            + TDII GFPGET+EDF +T++++++ KF   +   +  R GTPAA M+ +V   VVKK
Sbjct: 329 AMTTDIIVGFPGETEEDFEETLDVVRKVKFDSAYTFVYSKRTGTPAAAMEDQVEPEVVKK 388

Query: 406 RSRELTSVFE 415
           R   L  V +
Sbjct: 389 RFSRLLEVIK 398


>gi|282850176|ref|ZP_06259555.1| MiaB-like protein [Veillonella parvula ATCC 17745]
 gi|294791828|ref|ZP_06756976.1| Fe-S oxidoreductase [Veillonella sp. 6_1_27]
 gi|294793689|ref|ZP_06758826.1| Fe-S oxidoreductase [Veillonella sp. 3_1_44]
 gi|416998991|ref|ZP_11939660.1| tRNA methylthiotransferase YqeV [Veillonella parvula
           ACS-068-V-Sch12]
 gi|282579669|gb|EFB85073.1| MiaB-like protein [Veillonella parvula ATCC 17745]
 gi|294455259|gb|EFG23631.1| Fe-S oxidoreductase [Veillonella sp. 3_1_44]
 gi|294457058|gb|EFG25420.1| Fe-S oxidoreductase [Veillonella sp. 6_1_27]
 gi|333977144|gb|EGL78003.1| tRNA methylthiotransferase YqeV [Veillonella parvula
           ACS-068-V-Sch12]
          Length = 431

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 181/359 (50%), Gaps = 15/359 (4%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T+   T GC  NQ D++ M G      Y   D  E+ADI++INTC+V +  +     LI
Sbjct: 2   KTVAFTTLGCRVNQYDTDAMKGLFLQNNYEAVDFDEKADIYVINTCSVTNMGEKKSRQLI 61

Query: 119 AKCKSAKKP--LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHE---- 170
            K K   +   ++V GC  Q   D +  ++GV++V G     ++VE+VE+ L+  E    
Sbjct: 62  RKAKRQNEDAYVIVTGCYAQLDPDAIAAIDGVNLVIGTNNRSKIVELVEQ-LESTERQIN 120

Query: 171 -VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
            VR ++       + L     +K    + I  GC   C +C   + RG L S  V+ +V 
Sbjct: 121 AVRDIMKESNFEEMPLYGNESDKARAFMKIQEGCNNYCAFCIIPYTRGKLKSRKVDDIVQ 180

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
             + ++  G  E+ L+    G YG ++    P L + + A L       +R G      +
Sbjct: 181 EAKRLVDHGFHEIVLTGIHLGNYGVELP-GRPTLADVVKALLEIPNLYRIRFGSIESVEV 239

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+    +  C +  LH+P+Q+GSD VL  M R YTL +++ ++ +L   +  + I
Sbjct: 240 SDELVELMATNKRVCPH--LHLPLQAGSDHVLKLMKRHYTLQEYKDLITSLRSRIKDLSI 297

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 406
            TDII GFP ETDEDF +T+N ++E  F  +H   +  R GTPAA M  +VP AV K R
Sbjct: 298 TTDIIAGFPQETDEDFEETLNTVREIGFTHIHAFPYSIREGTPAATMADQVPEAVKKTR 356


>gi|302874325|ref|YP_003842958.1| MiaB family RNA modification protein [Clostridium cellulovorans
           743B]
 gi|307689408|ref|ZP_07631854.1| RNA modification enzyme, MiaB family protein [Clostridium
           cellulovorans 743B]
 gi|302577182|gb|ADL51194.1| RNA modification enzyme, MiaB family [Clostridium cellulovorans
           743B]
          Length = 433

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 174/355 (49%), Gaps = 13/355 (3%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  N  +SE M  +  + GY + D  E+A++++INTCTV +         I+K K  
Sbjct: 7   TLGCRVNIYESEAMTEKFKSEGYDVVDFDEKAEVYVINTCTVTNMGDKKSRQYISKAKKK 66

Query: 125 KKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLH 175
               VVA  GC  Q S D +  +EGV +V G +    +V  V   +   E       +L 
Sbjct: 67  NPEAVVAVVGCYSQTSPDEVSAIEGVDVVLGTRNKGDIVYYVNRAMDTKEKFVVVKDVLR 126

Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
            K    L +      K    L +  GC   C+YC   +ARG + S   E+++  V  +  
Sbjct: 127 NKVFEELKIEDFE-GKTRAFLKVQDGCNRFCSYCLIPYARGAVCSKNPETIIDEVNKLAD 185

Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
           +G KE+ LS     +YG D+      L++ I      +G   +RIG   P F  + + E 
Sbjct: 186 NGFKEIILSGIHIASYGVDLE-ERKTLMDIIEEIHKINGIKRIRIGSVEPRFFTDEVIEK 244

Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
              +   C +   H+ +QSG DA L  MNR+YT  ++   V  L E +P + I TD+I G
Sbjct: 245 MASMEKMCPH--FHLSLQSGCDATLKRMNRKYTAEEYFNTVVKLRERIPNVSITTDVIVG 302

Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 410
           FPGET E+FN+T N +KE +  ++HI ++ PR GT AA MK      +K+   +L
Sbjct: 303 FPGETAEEFNETFNYLKELRVAKMHIFKYSPRKGTKAADMKDDVHGTIKEERSKL 357


>gi|329296076|ref|ZP_08253412.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Plautia stali symbiont]
          Length = 474

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 130/396 (32%), Positives = 206/396 (52%), Gaps = 29/396 (7%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
           T+ +++KT+GC  N+ DS  MA  L S  GY LT+ +E+AD+ L+NTC+++  +Q  +  
Sbjct: 2   TKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEEAEDADVLLLNTCSIREKAQEKVFH 61

Query: 117 LIAKCKS--AKKP---LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
           L+ + K   AK P   + V GCV   +G +  +  + V IV G Q + R+ E++ + ++G
Sbjct: 62  LLGRWKKLKAKNPELIIGVGGCVASQEGDKIRQRAQCVDIVFGPQTLHRLPEMINQ-VRG 120

Query: 169 HEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
            +  ++     P ++    LP+ R       + I  GC   CT+C   + RG   S   +
Sbjct: 121 SKSTIVD-VSFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPCD 179

Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYG----RDIGVNLPILLNAIVAELPPDGSTMLRI 280
            ++  V  + A GV+EV L  ++  AY      D       LL  + A    DG   +R 
Sbjct: 180 DILLEVAQLAAQGVREVNLLGQNVNAYRGATFDDQICTFAELLRLVAA---IDGIDRIRF 236

Query: 281 GMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
             ++P   +E   +I +V R  P + SFLH+PVQSG+D +L+ M R +T  +++ ++  L
Sbjct: 237 TTSHP---IEFTDDIIDVYRDMPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRKL 293

Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKV 398
           +   P +QI++D I GFPGET +DF QT+ LI E  F       +  RPGTPAA +   V
Sbjct: 294 VAARPDIQISSDFIIGFPGETQQDFEQTMKLIGEVNFDTSFSFIYSARPGTPAADLPDDV 353

Query: 399 PSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWI 432
           P    K+R   L      +A     GM G V+RI +
Sbjct: 354 PEEEKKQRLYILQDRINQQAMAWSRGMLGTVQRILV 389


>gi|269797947|ref|YP_003311847.1| MiaB-like tRNA modifying enzyme [Veillonella parvula DSM 2008]
 gi|269094576|gb|ACZ24567.1| MiaB-like tRNA modifying enzyme [Veillonella parvula DSM 2008]
          Length = 431

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 181/359 (50%), Gaps = 15/359 (4%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T+   T GC  NQ D++ M G      Y   D  E+ADI++INTC+V +  +     LI
Sbjct: 2   KTVAFTTLGCRVNQYDTDAMKGLFLQNNYEAVDFDEKADIYVINTCSVTNMGEKKSRQLI 61

Query: 119 AKCKSAKKP--LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHE---- 170
            K K   +   ++V GC  Q   D +  ++GV++V G     ++VE+VE+ L+  E    
Sbjct: 62  RKAKRQNEDAYVIVTGCYAQLDPDAIAAIDGVNLVIGTNNRSKIVELVEQ-LESTERQIN 120

Query: 171 -VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
            VR ++       + L     +K    + I  GC   C +C   + RG L S  V+ +V 
Sbjct: 121 AVRDIMKESNFEEMPLFGNESDKTRAFMKIQEGCNNYCAFCIIPYTRGKLKSRKVDDIVQ 180

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
             + ++  G  E+ L+    G YG ++    P L + + A L       +R G      +
Sbjct: 181 EAKRLVDHGFHEIVLTGIHLGNYGVELP-GRPTLADVVKALLEIPNLYRIRFGSIESVEV 239

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+    +  C +  LH+P+Q+GSD VL  M R YTL +++ ++ +L   +  + I
Sbjct: 240 SDELVELMATNKRVCPH--LHLPLQAGSDHVLKLMKRHYTLQEYKDLITSLRSRIKDLSI 297

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 406
            TDII GFP ETDEDF +T+N ++E  F  +H   +  R GTPAA M  +VP AV K R
Sbjct: 298 TTDIIAGFPQETDEDFEETLNTVREIGFTHIHAFPYSIREGTPAATMADQVPEAVKKTR 356


>gi|117928695|ref|YP_873246.1| RNA modification protein [Acidothermus cellulolyticus 11B]
 gi|229890412|sp|A0LV00.1|MIAB_ACIC1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|117649158|gb|ABK53260.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidothermus
           cellulolyticus 11B]
          Length = 497

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/388 (31%), Positives = 191/388 (49%), Gaps = 16/388 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT--- 116
           T  ++TFGC  N  DSE +AG L A GY    + E AD+ + NTC V+  + + +     
Sbjct: 27  TYQVRTFGCQMNMHDSERIAGLLEAAGYVRAADDEPADVVVFNTCAVRENADNRLYGNLG 86

Query: 117 LIAKCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
           L+   K AK  + +A  GC+ Q  +   ++    V +V G   I+ +  ++E      E 
Sbjct: 87  LLLPVKKAKPDMQIAVGGCLAQKDKGDIVRRAPWVDVVFGTHNIEALPVLLERARIAREA 146

Query: 172 RLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           ++  R+ L      LP  R + +   + I+VGC   CT+C     RG         ++  
Sbjct: 147 QVEIREALEVFPSTLPSRRESVYAAWVAISVGCNNTCTFCIVPSLRGRERDRRPGDILRE 206

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           ++T++ADGV EV L  ++  +YG D G +       + A    DG   +R    +P    
Sbjct: 207 IQTLVADGVLEVTLLGQNVNSYGVDFG-DRQAFAKLLRACGTIDGLERVRFTSPHPRDFT 265

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           + +  IA +   P V   LH+P+QSGSDAVL  M R Y    +  ++  +   +P   I 
Sbjct: 266 DDV--IAAMAETPNVMPQLHMPLQSGSDAVLRRMRRSYRKEKYLDIISRVRSAIPDAAIT 323

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 408
           TDII GFPGET++DF +T++++++ +F      Q+  RPGTPAA M  +VP  VV  R  
Sbjct: 324 TDIIVGFPGETEDDFAETLDVVRKARFAGAFTFQYSKRPGTPAAEMPDQVPPDVVADRFA 383

Query: 409 ELTSVFE--AFTPYLGMEGRVERIWITE 434
            L ++ E  A        GRV  + + E
Sbjct: 384 RLVALVEQIALEENQAQVGRVVEVLVAE 411


>gi|389879388|ref|YP_006372953.1| RNA modification protein [Tistrella mobilis KA081020-065]
 gi|388530172|gb|AFK55369.1| RNA modification protein [Tistrella mobilis KA081020-065]
          Length = 467

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/388 (31%), Positives = 195/388 (50%), Gaps = 44/388 (11%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
           T+ +Y+KT+GC  N  DSE M+  L+A G+A T+ +E+AD+ ++NTC ++  +   + + 
Sbjct: 2   TKKLYIKTYGCQMNVYDSERMSDVLAAQGFAPTEVAEDADLVILNTCHIREKAAEKVYSD 61

Query: 118 IAKCKSAKKP----LVVAGCVPQGSRDLKELEGVSI----------VGVQQIDRVVEVVE 163
           + + ++A  P    + V GCV Q        EGV I           G Q   R+ ++VE
Sbjct: 62  LGRLRAAGGPAGRLIAVGGCVAQA-------EGVEIRTRAPFVDIVFGPQTYHRLADMVE 114

Query: 164 ETLKGHEVRLLHRKKLPALD-LPKVRRNK-FVEILPINVGCLGACTYCKTKHARGHLGSY 221
              +G  V           D LP     +     + +  GC   CT+C   + RG   S 
Sbjct: 115 RATRGQAVVETDFPTEAKFDHLPTATGQRGHTAFVAVQEGCDKFCTFCVVPYTRGAEYSR 174

Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAY---------GRDIGVNLPILLNAIVAELPP 272
              +++  +R + A+GV+EV L  ++  AY         G      L  L  AI AE+  
Sbjct: 175 PAGAILDEIRALAANGVREVMLLGQNVNAYHGAAPEGARGPAGDWTLARLARAI-AEI-- 231

Query: 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRH---PCVYSFLHVPVQSGSDAVLSAMNREYTL 329
           DG   +R   ++P  +   L     +L H   P +  +LH+PVQSGSD +L AMNR++T 
Sbjct: 232 DGIARIRYTTSHPRDMGGDL-----ILAHRDLPQLMPYLHLPVQSGSDRILKAMNRKHTA 286

Query: 330 SDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
            D+  +VD L E+ P M ++ D I GFPGE+D DF  T+ L++   +   +  ++ PRPG
Sbjct: 287 EDYLRIVDRLREVRPDMAMSGDFIVGFPGESDADFEATMRLVERVDYALAYSFKYSPRPG 346

Query: 390 TPAARMK-KVPSAVVKKRSRELTSVFEA 416
           TPAA ++ +VP  V  +R + L  +  +
Sbjct: 347 TPAADLEDQVPDEVKSERLQRLQDLLSS 374


>gi|373487449|ref|ZP_09578117.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Holophaga foetida DSM
           6591]
 gi|372009531|gb|EHP10151.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Holophaga foetida DSM
           6591]
          Length = 434

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/356 (32%), Positives = 190/356 (53%), Gaps = 21/356 (5%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            +++T+GC  N  DSE ++G L   G+A   + EEAD+ ++NTC+++  +   + +++ +
Sbjct: 3   FFIETWGCQMNDHDSEKLSGMLDKQGFAPAASQEEADLVILNTCSIREKAVHKVYSVLGR 62

Query: 121 CKSAK--KPLVV--AGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
            +  K  +PL+V  AGC+ Q  +D   K    +  V G   I ++  +VEE    H+ R+
Sbjct: 63  LREEKLQRPLIVGVAGCLAQQEKDALFKRAPHIDFVLGTMAIQQLPRLVEEARARHK-RV 121

Query: 174 LHRKKLPALDL--PKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           +  ++ P   L  P+V  RR+    ++ I  GC  ACTYC     RG       E ++  
Sbjct: 122 IDTQQYPDNHLFPPEVTQRRDTAKALVTIIEGCNHACTYCVVPTTRGPERHRPYEDVLAE 181

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           VR ++ DG +EV    ++  +Y    G N   LL+   +E+  DG   +R   ++P   +
Sbjct: 182 VRQLVKDGYREVEFLGQNVNSY--QGGCNFAELLDR-ASEI--DGLEWIRFTTSHP---M 233

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
              +E+A+ L  +P +  FLH+P+QSGSDAVL  M R YT+  +   +  L E      +
Sbjct: 234 NFTRELAQTLVSNPKIAPFLHLPIQSGSDAVLRRMGRHYTVDQYLERLGYLGEGRSRFSL 293

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
           +TD I GFPGETDEDF  T+ +++  K+       + PRPGTPA +MK   S  +K
Sbjct: 294 STDFIVGFPGETDEDFEGTLRVLETVKYDTSFSFVYSPRPGTPALKMKDDLSPEIK 349


>gi|313893435|ref|ZP_07827007.1| tRNA methylthiotransferase YqeV [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313442076|gb|EFR60496.1| tRNA methylthiotransferase YqeV [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 431

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 185/369 (50%), Gaps = 15/369 (4%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T+   T GC  NQ D++ M G      Y   D  E+ADI++INTC+V +  +     LI
Sbjct: 2   KTVAFTTLGCRVNQYDTDAMKGLFLQNNYEAVDFDEKADIYVINTCSVTNMGEKKSRQLI 61

Query: 119 AKCKSAKKP--LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHE---- 170
            K K   +   ++V GC  Q   D +  ++GV++V G     ++VE+VE+ L+  E    
Sbjct: 62  RKAKRQNEDAYVIVTGCYAQLDPDAIAAIDGVNLVIGTNNRSKIVELVEQ-LESTERQIN 120

Query: 171 -VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
            VR ++       + L     +K    + I  GC   C++C   + RG L S  +E +V 
Sbjct: 121 AVRDIMKESNFEEMPLFGNESDKARAFMKIQEGCNNYCSFCIIPYTRGKLKSRKIEDIVE 180

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
             + ++  G  E+ L+    G YG ++    P L + + A L       +R G      +
Sbjct: 181 EAKRLVDHGFHEIVLTGIHLGNYGVELP-GRPTLADVVKALLEIPELYRIRFGSIESVEV 239

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L E+ +  +  C    LH+P+Q+GSD VL  M R YTL +++ ++  L   +  + I
Sbjct: 240 SDELVELMDTDKRVC--PNLHLPLQAGSDHVLKLMRRHYTLQEYKDLIAKLRSRIKDLSI 297

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
            TDII GFP ETDEDF +T+N ++E  F  +H   +  R GTPAA M  +VP AV K R 
Sbjct: 298 TTDIIAGFPQETDEDFEETLNTVREIGFTHIHAFPYSIREGTPAATMPDQVPEAVKKTRV 357

Query: 408 RELTSVFEA 416
             L  + +A
Sbjct: 358 ALLNGLSQA 366


>gi|152976740|ref|YP_001376257.1| RNA modification protein [Bacillus cytotoxicus NVH 391-98]
 gi|152025492|gb|ABS23262.1| RNA modification enzyme, MiaB family [Bacillus cytotoxicus NVH
           391-98]
          Length = 450

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/363 (32%), Positives = 192/363 (52%), Gaps = 18/363 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY   D  + AD++++NTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQSGYERVDFEKTADVYVVNTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
           +    +    + V GC  Q S  ++  + GV IV G Q  +++++ +E+  +  +    V
Sbjct: 63  RAVRHNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLDYIEQYRQERQPINAV 122

Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           R + + ++   LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG D+   NL  LL  + AE+   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNLAGLLRDMEAEVK--GLKRLRISSIEASQIS 239

Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EVL +   V   LH+P+QSGS+ VL  M R+YT+  F+  ++ L E +PG+ I
Sbjct: 240 D---EVIEVLDKSKVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLNRLKEALPGLAI 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IKE +F ++H+  +  R GTPAARM+ ++P  V  +R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQIPEEVKNERV 356

Query: 408 REL 410
             L
Sbjct: 357 HRL 359


>gi|229890681|sp|B7KVE0.2|MIAB_METC4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
          Length = 446

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 187/372 (50%), Gaps = 24/372 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           Y+K++GC  N  D+  MA  L+A GY+ TD  EEAD+ ++NTC ++  +   + + + + 
Sbjct: 5   YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 64

Query: 122 KSAK---------KPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
           +  K           +VVAGCV Q  G   L     V +V G Q   R+ +++ ++    
Sbjct: 65  RVLKGDRAESGQETRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 121

Query: 170 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
           E R++   + PA D    LP  R       L +  GC   C +C   + RG   S +V +
Sbjct: 122 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 180

Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
           +V   R ++  GV+E+ L  ++  AY  D     P  L  ++  L    G   LR   ++
Sbjct: 181 VVEEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGQLMDALSAVPGLLRLRYTTSH 240

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           P    + L  IA    +P V  +LH+PVQSGSD +L AMNR +T   +R +++ +    P
Sbjct: 241 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRNARP 298

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVV 403
            + +++D I GFPGETD DF +T+ L+ +  F      ++ PR GTPAA R   VP AV 
Sbjct: 299 DIALSSDFIVGFPGETDADFAETLRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPEAVK 358

Query: 404 KKRSRELTSVFE 415
            +R   L  + +
Sbjct: 359 TERLAALQDLLD 370


>gi|429759389|ref|ZP_19291888.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella atypica KON]
 gi|429179665|gb|EKY20904.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella atypica KON]
          Length = 426

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/373 (32%), Positives = 196/373 (52%), Gaps = 23/373 (6%)

Query: 71  NQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KP 127
           N +DSE ++ QL   GY  TD+ E AD+ L+NTC V+  +++ +   I + K  K   K 
Sbjct: 2   NTADSERLSHQLEIVGYIPTDDVESADLILLNTCAVRETAETKVFGRIGELKRLKQKNKN 61

Query: 128 LVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL---LHRKKL 179
           L++A  GC+ Q ++    K    + IV G   I  + E++ E  + H+ ++   +    L
Sbjct: 62  LIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQRTHKHQINVDMDNTVL 121

Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
           P L         F   +PI  GC   CTYC   H RG   S  VE++V  V  + A G K
Sbjct: 122 PELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIVKEVTELGAKGFK 179

Query: 240 EVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
           E+ L  ++  +YG D   G +   L++A+   +P  G   +R   ++P  + + +  I  
Sbjct: 180 EITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHPQDMTKSM--IDA 234

Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
           + R   + + LH+P+QSGSD +L  MNR YT+  ++ ++    E +  + + TDII GFP
Sbjct: 235 LGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKNVVVTTDIIVGFP 294

Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEA 416
           GET+EDF QT+ L+K+ ++   +   +  R GTPAA M ++VP  V + R ++L  +   
Sbjct: 295 GETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQVPEEVKRVRLQQLMDIQNE 354

Query: 417 FTPYLG--MEGRV 427
            +  L   MEG+V
Sbjct: 355 ISLELNKTMEGKV 367


>gi|269127492|ref|YP_003300862.1| RNA modification enzyme, MiaB family [Thermomonospora curvata DSM
           43183]
 gi|268312450|gb|ACY98824.1| RNA modification enzyme, MiaB family [Thermomonospora curvata DSM
           43183]
          Length = 497

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/382 (30%), Positives = 189/382 (49%), Gaps = 19/382 (4%)

Query: 48  TGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVK 107
           T S +P+     T  ++T+GC  N  DSE +AG L   GY     SEE D+ + NTC V+
Sbjct: 6   TSSTAPR-----TYQIRTYGCQMNVHDSERLAGLLEEAGYVAAGESEEPDVVVFNTCAVR 60

Query: 108 SPSQSAMDTLIAKCKSAK--KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVV 159
             + + +   +   +  K  +P   + V GC+ Q  R+  ++    V +V G   I  + 
Sbjct: 61  ENADNRLYGNLGHLRPVKDARPGMQIAVGGCLAQKDREAIVRRAPWVDVVFGTHNIGSLP 120

Query: 160 EVVEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 217
            ++E      E ++  ++ L      LP  R + +   + I+VGC   CT+C     RG 
Sbjct: 121 ALLERARIQREAQVEIKEALETFPSTLPTRRESPYAAWVAISVGCNNTCTFCIVPSLRGR 180

Query: 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTM 277
                   ++  +  ++A+GV EV L  ++  AYG + G +       + A    +G   
Sbjct: 181 EKDRRPGEILAEIEALVAEGVLEVTLLGQNVNAYGSEFG-DRQAFAKLLRACGQIEGLER 239

Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
           +R    +P    + +  IA +   P V   LH+P+QSGSD +L AM R Y    F  +++
Sbjct: 240 VRFTSPHPRDFTDDV--IAAMAETPNVMPSLHMPLQSGSDRILRAMRRSYRQERFLGIIE 297

Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK- 396
            +   +P   I TDII GFPGETDEDF QT++++++ +F      Q+  RPGTPAA M  
Sbjct: 298 RVRAAMPEAAITTDIIVGFPGETDEDFEQTLHVVRQARFAGAFTFQYSKRPGTPAAEMDG 357

Query: 397 KVPSAVVKKRSRELTSVFEAFT 418
           +VP  VV++R   L ++ E  +
Sbjct: 358 QVPKEVVQERYERLVALQEQIS 379


>gi|258654111|ref|YP_003203267.1| RNA modification protein, MiaB family [Nakamurella multipartita DSM
           44233]
 gi|258557336|gb|ACV80278.1| RNA modification enzyme, MiaB family [Nakamurella multipartita DSM
           44233]
          Length = 508

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 187/370 (50%), Gaps = 20/370 (5%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
           T T  ++TFGC  N  DSE ++G L   GY   D+ + AD+ + NTC V+  + + +   
Sbjct: 8   TRTYQVRTFGCQMNVHDSERLSGLLEGAGYRAADDGDPADVVVFNTCAVRENADNKLYGN 67

Query: 118 IAKCKS--AKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEET--LK 167
           +    S  AK+P   + V GC+ Q  R   ++    V +V G   +  +  ++E     +
Sbjct: 68  LGHLASVKAKRPGMQIAVGGCLAQKDRGEIVRRAPWVDVVFGTHNVGSLPTLLERARHYE 127

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
             +V +L   ++    LP  R + +   + I+VGC   CT+C     RG         ++
Sbjct: 128 QAQVEILDALEVFPSSLPAKRDSHYAGWVSISVGCNNTCTFCIVPSLRGKEADRRPGDVL 187

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNP 285
             V+ ++ DGV EV L  ++  +YG   G       LL A  A    DG   +R    +P
Sbjct: 188 AEVQMLVDDGVLEVTLLGQNVNSYGVQFGDRQAFGKLLRACGA---IDGLERVRFTSPHP 244

Query: 286 P-FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
             F  + ++ +A+    P V   LH+P+QSGSD VL AM R Y  + +  ++D +   +P
Sbjct: 245 KDFTPDVIEAMAQT---PNVCHQLHMPLQSGSDRVLKAMRRSYRSTRYLAILDEVRAAMP 301

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVV 403
              I TDII GFPGETDEDF QT+++++  +F      Q+ PRPGTPAA +  +VP  VV
Sbjct: 302 DAAITTDIIVGFPGETDEDFEQTLDVVRRSRFAGAFTFQYSPRPGTPAATLPDQVPPEVV 361

Query: 404 KKRSRELTSV 413
            +R   LT +
Sbjct: 362 AERFGRLTEI 371


>gi|393200264|ref|YP_006462106.1| 2-methylthioadenine synthetase [Solibacillus silvestris StLB046]
 gi|327439595|dbj|BAK15960.1| 2-methylthioadenine synthetase [Solibacillus silvestris StLB046]
          Length = 511

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 194/387 (50%), Gaps = 18/387 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD----- 115
            Y++T+GC  N+ D+E MAG     GY  T+  EEAD+ L+NTC ++  +++ +      
Sbjct: 66  FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEMIEEADVVLLNTCAIRENAENKVFGELGF 125

Query: 116 TLIAKCKSAKKPLVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            L  K K+ +  + V GC+ Q     ++ LK+ + V +V G   I R+  ++ +     E
Sbjct: 126 LLKYKRKNPEMLIGVCGCMSQEESVVNKILKQYQHVDMVFGTHNIHRLPNILHDAYMSKE 185

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPK R       + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 186 MVVEVWSKEGDVIENLPKKRIGSIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 245

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR + A G KE+ L  ++  AYG+D   ++   L  ++ EL       +R   ++P   
Sbjct: 246 EVRELAAQGYKEIMLLGQNVNAYGKDFD-DIEYRLGDLMDELRKIDIPRIRFTTSHPRDF 304

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            +HL  I  + +   +   +H+PVQSGS+ +L  M R+YT   F  +VD +   +PG+ +
Sbjct: 305 DDHL--IKVLAKGGNLVDHIHLPVQSGSNEILKIMARKYTREHFLQLVDKIKAAIPGVTL 362

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
            TDII G+P ET+E F +T++L ++  F       + PR GTPAA+M   V     K R 
Sbjct: 363 TTDIIVGYPNETEEQFQETLDLYRQVGFDMAFTYIYSPREGTPAAKMVDNVTEEEKKDRL 422

Query: 408 RELTSVFEAFTPYL--GMEGRVERIWI 432
             L +V   ++     G+EG+   + +
Sbjct: 423 HRLNAVVSEYSAKALKGLEGQTVEVLV 449


>gi|451817753|ref|YP_007453954.1| threonylcarbamoyladenosine tRNA methylthiotransferase MtaB
           [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
 gi|451783732|gb|AGF54700.1| threonylcarbamoyladenosine tRNA methylthiotransferase MtaB
           [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
          Length = 467

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 183/365 (50%), Gaps = 16/365 (4%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
           G   +   T GC  N  ++E MA +    GY +TD    AD+++INTC+V + S      
Sbjct: 32  GKRFVAFATLGCRVNHYETEAMAEKFIQEGYEVTDFENFADVYVINTCSVTNMSDKKSRQ 91

Query: 117 LIAKCKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
           +I++ +   +  ++A  GC  Q    ++ ++EGV +V G +    +V  + +     + +
Sbjct: 92  IISRARRRNQEAIIAAVGCYSQVAPEEVAKIEGVDVVLGTRNKGDIVYYINKAKDEQKSQ 151

Query: 173 L-----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           L     L  K+   L++ + + +K    L I  GC   C YC   + RG   S   E ++
Sbjct: 152 LMVGEVLKNKQFEELNIEEYQ-DKTRAFLKIQDGCNRFCAYCVIPYTRGATCSKDPEKVL 210

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 286
             ++ +   G KE+ LS   T +YG D+  N+ ++   ++ E+   +G   +RIG   P 
Sbjct: 211 NEIKNLSQHGFKEIILSGIHTASYGVDLDGNITLI--TLLEEIEKLEGIERVRIGSIEPS 268

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
           F  + +    + ++  C     H+ +QSG DA L  MNR YT  ++   V+ + E +   
Sbjct: 269 FFTDEVIGKIKDMKKLCPQ--FHLSLQSGCDATLKRMNRRYTAKEYEDAVNKIRENLKDA 326

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 405
            I TD+I GFPGETDE+FN+T   +K  K  + HI +F PR GT AA M  ++   V  K
Sbjct: 327 SITTDVIVGFPGETDEEFNETYEFLKRLKLTKTHIFKFSPRKGTKAADMTNQIDGTVKDK 386

Query: 406 RSREL 410
           RS+ L
Sbjct: 387 RSKTL 391


>gi|291457707|ref|ZP_06597097.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium breve DSM
           20213 = JCM 1192]
 gi|291380760|gb|EFE88278.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium breve DSM
           20213 = JCM 1192]
          Length = 483

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/402 (30%), Positives = 195/402 (48%), Gaps = 25/402 (6%)

Query: 51  LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD----NSEEADIWLINTCTV 106
           L+ +  G    ++ T GC  N  DSE +AG L   GY        N  + D+ ++NTC V
Sbjct: 20  LTTQERGKGVFHIHTLGCQMNVHDSERIAGVLETDGYVPATEEQVNDHDLDLIVLNTCAV 79

Query: 107 KSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRDL---KELEGVSIVGVQQIDRV 158
           +  +   M   +      K+      + V GC+ Q  R     K     ++ G + I  +
Sbjct: 80  RENAAERMYGTVGLWAEMKRQRPNLQIAVGGCMAQLDRQKIANKAPWVAAVFGTKNIGDL 139

Query: 159 VEVVEETLKGH--EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARG 216
            +++ +       +V++  + +     LP  R ++    + I+VGC   CT+C     RG
Sbjct: 140 PQLLNQNRATDTPQVKVDDQLQQFPSQLPAARASRVSSWVAISVGCNNTCTFCIVPTTRG 199

Query: 217 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDG 274
                    ++  VR  +A+G KEV L  ++  ++G  IG       LL A       DG
Sbjct: 200 KEKDRRPGDILDEVRQCVANGAKEVTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDG 256

Query: 275 STMLRIGMTNPP-FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 333
              +R    +P  F  + ++ +AE    P V   LH+P+QSGSD +L AM R Y  S F 
Sbjct: 257 LERVRFTSPHPAAFTDDVIEAMAET---PNVMHQLHMPLQSGSDKILRAMRRSYRASKFM 313

Query: 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393
           T+++ + + +P  QI+TDII GFPGET+EDF QT++++++ +F       + PRPGTPAA
Sbjct: 314 TILEKVRQAMPDAQISTDIIVGFPGETEEDFQQTLDVVRQARFSSAFTFIYSPRPGTPAA 373

Query: 394 RMKKVPSAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWIT 433
            M++VP  VV+ R   L ++ E  T       EGR   + IT
Sbjct: 374 EMEQVPHDVVQDRFNRLVALQEQITAENLQSFEGRDVEVMIT 415


>gi|288817802|ref|YP_003432149.1| 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6]
 gi|384128563|ref|YP_005511176.1| MiaB family RNA modification protein [Hydrogenobacter thermophilus
           TK-6]
 gi|288787201|dbj|BAI68948.1| 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6]
 gi|308751400|gb|ADO44883.1| RNA modification enzyme, MiaB family [Hydrogenobacter thermophilus
           TK-6]
          Length = 433

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/389 (32%), Positives = 209/389 (53%), Gaps = 20/389 (5%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           Y+KTFGC  N +DSE + G L   GY    + +EADI LINTCT++      + + + + 
Sbjct: 4   YIKTFGCQMNFNDSERIKGMLQTLGYQEAKDWQEADIILINTCTIREKPDQKVFSHLGEY 63

Query: 122 KSAK----KPLV-VAGCVPQ--GSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHE-VR 172
           K  K    K L+ V GC+ Q  G   +++   V I+     + ++ E++++   G++ V 
Sbjct: 64  KKLKEQNPKALIGVCGCLAQRMGFELIQKSPVVDIMFSSFNMHQLPELIQQAQAGYKAVA 123

Query: 173 LLHR---KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           +L      +    D P VR N +   + +  GC   CTYC     RG   S ++ES++  
Sbjct: 124 ILENPPDDEDKLWDYPTVRDNPYCAYVTVMKGCDKNCTYCVVPKTRGRQRSRSLESILKE 183

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           VR +++DGVKEV L  ++  A+G+DIG +   LL   VAE+  DG   +R    +P  + 
Sbjct: 184 VRDLVSDGVKEVHLLGQNVTAWGKDIGKHFSELLYR-VAEI--DGVERIRFTTGHPKDLD 240

Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
           E + +    ++  C +  +H+P Q+GSD +L  M+R YT  ++   +  L E V G+  +
Sbjct: 241 EGIAKAMGEIKKVCEH--IHLPFQAGSDRILKLMDRGYTKEEYLEKISMLKEYVKGITFS 298

Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
           TD+I GFP ET+EDF +T++++K+ +F QV   +F PRP TPA  M+ +VP  V  +R  
Sbjct: 299 TDVIVGFPTETEEDFEETLDMLKKVRFEQVFSFKFSPRPDTPAYSMEGQVPDQVKTQRMS 358

Query: 409 ELTSVFEAFTPYLG--MEGRVERIWITEI 435
            L  + +     +    EG ++ + I  I
Sbjct: 359 RLLQLQKEIMGEVAKSYEGTIQEVLIESI 387


>gi|365866997|ref|ZP_09406587.1| hypothetical protein SPW_6891 [Streptomyces sp. W007]
 gi|364003528|gb|EHM24678.1| hypothetical protein SPW_6891 [Streptomyces sp. W007]
          Length = 497

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 188/371 (50%), Gaps = 20/371 (5%)

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           ++T+GC  N  DSE ++G L   GY  A   +  +AD+ + NTC V+  + + +   + +
Sbjct: 9   VRTYGCQMNVHDSERLSGLLEGAGYVRAPEGSDGDADVVVFNTCAVRENADNKLYGNLGR 68

Query: 121 CK--SAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
                 K+P   + V GC+ Q  RD  +K    V +V G   I ++  ++E      E +
Sbjct: 69  LAPMKTKRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERARIQEEAQ 128

Query: 173 LLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           +   + L A    LP  R + +   + I+VGC   CT+C     RG         ++  +
Sbjct: 129 IEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTGDILAEI 188

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
             ++A+GV E+ L  ++  AYG DIG       LL A  A    +G   +R    +P   
Sbjct: 189 EALVAEGVSEITLLGQNVNAYGSDIGDREAFSKLLRACGA---IEGLERVRFTSPHPRDF 245

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + +  IA +   P V   LH+P+QSGSD +L AM R Y    F  +++ +   +P   I
Sbjct: 246 TDDV--IAAMAETPNVMPQLHMPMQSGSDTILKAMRRSYRQERFLGIIEKVRAAMPDAAI 303

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
           +TDII GFPGET+EDF QT++ ++E +F      Q+  RPGTPAA M  ++P  VV++R 
Sbjct: 304 STDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAADMDGQIPKEVVQERY 363

Query: 408 RELTSVFEAFT 418
             L+++ E  +
Sbjct: 364 MRLSALQEQIS 374


>gi|124026430|ref|YP_001015545.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str.
           NATL1A]
 gi|229890598|sp|A2C471.1|MIAB_PROM1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|123961498|gb|ABM76281.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str.
           NATL1A]
          Length = 463

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/391 (30%), Positives = 194/391 (49%), Gaps = 26/391 (6%)

Query: 44  HLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT 103
            L KT     K P   + ++ TFGC  N++DSE M+G L   GY   +   +AD+ L NT
Sbjct: 5   QLQKTNQPPVKAPRG-SYWITTFGCQMNKADSERMSGILEYMGYYPAEEELKADLVLYNT 63

Query: 104 CTVKSPSQSAMDTLIAKCKSAKKPL-----VVAGCVPQ--GSRDLKELEGVSIV-GVQQI 155
           CT++  ++  + + + +    K+ L     VVAGC+ Q  G   L+ +  + ++ G Q  
Sbjct: 64  CTIRDSAEQKVYSYLGRQAIRKRSLPNLKIVVAGCLAQQEGESLLRRVPEIDLLMGPQHC 123

Query: 156 DRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNK-FVEILPINVGCLGACTYCKTKHA 214
           +R+  ++ +   G +V L   ++    D+   RR+  F   + I  GC   CTYC     
Sbjct: 124 NRLESLLNQVDSGQQV-LATEEQFILEDITTPRRDSSFCGWVNIIYGCNERCTYCVVPSV 182

Query: 215 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---------VNLPILLNA 265
           RG   S T E++   V  +   G KE+ L  ++  AYGRD           + L  LL  
Sbjct: 183 RGKEQSRTPEAIKSEVEDLAKSGYKEITLLGQNIDAYGRDFQSQNKEASAQITLSYLLKY 242

Query: 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 325
           I      +G   +R   ++P +  + L +    L  P V    H+P QSGS+ +L  M R
Sbjct: 243 I---HDIEGIERIRFATSHPRYFTKELIDTCSEL--PKVCEHFHIPFQSGSNKILKNMGR 297

Query: 326 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385
            YT+  ++ +++ +   +P   I+ D I  FPGE++ D+ QT++LI E KF  V+ + + 
Sbjct: 298 GYTIESYKNIINYIKSKIPKAAISGDAIVAFPGESETDYEQTLSLIDEIKFDHVNTAAYS 357

Query: 386 PRPGTPAARMKKVPSAVVK-KRSRELTSVFE 415
           PRP TPAA   +  +  +K KR RE+ S+ E
Sbjct: 358 PRPNTPAATWPRQLNEDIKVKRLREINSLVE 388


>gi|229815363|ref|ZP_04445698.1| hypothetical protein COLINT_02409 [Collinsella intestinalis DSM
           13280]
 gi|229809143|gb|EEP44910.1| hypothetical protein COLINT_02409 [Collinsella intestinalis DSM
           13280]
          Length = 453

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 186/370 (50%), Gaps = 18/370 (4%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T +++TFGC  N  DSE ++G L + G  +  +  +ADI +  TC V+  + + +    
Sbjct: 10  KTYFIRTFGCQMNLHDSERVSGLLDSCGCLVASSPADADIVIFMTCCVREAADTRLYGQC 69

Query: 119 AKCKS------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG- 168
           + CKS       K+ + V GC+ Q  G   L  L+ V ++ G   I  V +++ +     
Sbjct: 70  SSCKSLPASPSGKRVIAVGGCIAQRDGEGLLTNLDNVDVIFGTHSIAHVADLLADAFADG 129

Query: 169 -HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
            H VR+       A D+P  R   +   +PI  GC   C+YC   + RG   S  ++ +V
Sbjct: 130 DHHVRVEEIDTGAATDMPWHRETAYHAWVPIMTGCNNFCSYCIVPYVRGREKSRPMDEIV 189

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             V  ++  GV+ + L  ++  +YGRD   +       ++  +   G   +    ++P  
Sbjct: 190 DEVTGLVRQGVRSITLLGQNVNSYGRDH--DHDPRFAELLRRVGDTGIERIYFTSSHPKD 247

Query: 288 IL-EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
           +L E +  +AEV   P V   LH+ VQSGS  +L  MNR+YT   +  +V  + + +P +
Sbjct: 248 LLPETIDAMAEV---PAVMPQLHLAVQSGSSRILKLMNRKYTREQYLDLVQRVRDRIPNI 304

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 405
            + TDII GFPGE +EDF QTV+L+ E KF Q     +  R GTPAA++    P +V+++
Sbjct: 305 ALTTDIIVGFPGEAEEDFEQTVSLVDEAKFAQAFTFIYSKREGTPAAKIVDPTPRSVIQE 364

Query: 406 RSRELTSVFE 415
           R   L    E
Sbjct: 365 RFDRLVKHVE 374


>gi|325962847|ref|YP_004240753.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323468934|gb|ADX72619.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 519

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 131/413 (31%), Positives = 206/413 (49%), Gaps = 48/413 (11%)

Query: 18  PGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEY 77
           PG    I+A G  P  + NKPR                    T  ++TFGC  N  DSE 
Sbjct: 10  PGTGTSIDAGGA-PTMDGNKPR--------------------TYQVRTFGCQMNVHDSER 48

Query: 78  MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT---LIAKCKSAKKPLVVA--G 132
           MAG L   GY   +  E+AD+ + NTC V+  + + +     ++A  K+A   + +A  G
Sbjct: 49  MAGMLEDAGYVQAEG-EQADVVVFNTCAVRENADNKLYGNLGILAPVKAANPGMQIAVGG 107

Query: 133 CVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALD-----L 184
           C+ Q  R+  LK+   V ++ G   +  +  ++E      E +L   + L +LD     L
Sbjct: 108 CLAQKDRETILKKAPWVDAVFGTHNVGALPALLERARHNSEAQL---EILESLDVFPSTL 164

Query: 185 PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLS 244
           P  R + +   + I+VGC   CT+C     RG         ++  ++ ++ DG  EV L 
Sbjct: 165 PTKRDSVYSGWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEIQALVDDGAIEVTLL 224

Query: 245 SEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNPP-FILEHLKEIAEVLRH 301
            ++  +YG + G  L    LL A       DG   +R    +P  F  + ++ +AE    
Sbjct: 225 GQNVNSYGVEFGDRLAFSKLLRACGG---IDGLERVRFTSPHPAAFTDDVIEAMAET--- 278

Query: 302 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 361
           P V   LH+P+QSGSD +L AM R Y  + F  ++D + E +P   I+TDII GFPGET+
Sbjct: 279 PNVMPQLHMPLQSGSDRILRAMKRSYRSTKFLGILDKVRERIPHAAISTDIIVGFPGETE 338

Query: 362 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV 413
           EDF  T++++++ +F      Q+  RPGTPAA +  ++P AVV++R   LT++
Sbjct: 339 EDFQATLDVVEQSRFATAFTFQYSKRPGTPAADLPDQLPKAVVQERFERLTAL 391


>gi|220909156|ref|YP_002484467.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
           PCC 7425]
 gi|219865767|gb|ACL46106.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7425]
          Length = 446

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/379 (31%), Positives = 197/379 (51%), Gaps = 27/379 (7%)

Query: 55  IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
           +  T   ++ TFGC  N++DSE MAG L   G+   +N E AD+ L NTCT++  ++  +
Sbjct: 1   MSATRRYHITTFGCQMNKADSERMAGVLEDLGFIWEENPEVADLVLYNTCTIRDNAEQKV 60

Query: 115 DTLIAKCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETL 166
            + + K    K+      LVVAGCV Q  G + L+ +  + +V G Q  +R+ E++E+  
Sbjct: 61  YSYLGKQARRKRDRPDLTLVVAGCVAQQEGEQLLRRVPELDLVMGPQYANRLGELLEQVF 120

Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVE 224
            G++V      ++   D+ K RR+  V    +NV  GC   CTYC   + RG   S T  
Sbjct: 121 NGNQVVATEPLQI-VEDITKPRRDSSVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPA 178

Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGST 276
           ++   +  +   G KEV L  ++  AYGRD+      G +   L + +  + ++P  G  
Sbjct: 179 AIRAEIEELARQGYKEVTLLGQNIDAYGRDLPGVTPEGRHQHTLTDLLYYIHDVP--GIE 236

Query: 277 MLRIGMTNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
            +R   ++P +  E L +  AE+   P V    H+P QSG + +L AM R YT   +  +
Sbjct: 237 RIRFATSHPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNDILKAMARGYTREKYLGI 293

Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395
           ++ +   +P   I+ D I GFPGET+  F  T+ L++   F Q++ + + PRPGTPAA+ 
Sbjct: 294 IEKIRSYMPDASISADAIVGFPGETEAQFINTLELVETVGFDQLNTAAYSPRPGTPAAQW 353

Query: 396 K-KVPSAVVKKRSRELTSV 413
           + ++P  V   R + L  +
Sbjct: 354 QNQLPEEVKSDRLQRLNHL 372


>gi|303233705|ref|ZP_07320359.1| MiaB-like protein [Finegoldia magna BVS033A4]
 gi|417926234|ref|ZP_12569640.1| MiaB-like protein [Finegoldia magna SY403409CC001050417]
 gi|302495139|gb|EFL54891.1| MiaB-like protein [Finegoldia magna BVS033A4]
 gi|341589874|gb|EGS33135.1| MiaB-like protein [Finegoldia magna SY403409CC001050417]
          Length = 430

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 194/377 (51%), Gaps = 40/377 (10%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  NQ ++E MA      GY +TD+    D++++NTCTV + S       I+K +S 
Sbjct: 8   TLGCKVNQYETEAMAELFVKKGYEITDDYN-CDVFVLNTCTVTNLSDRKSRQQISKIRSE 66

Query: 125 KKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
               V+A  GC  Q S D ++ ++GV+++ G +    +VE+ E  L     +++++    
Sbjct: 67  NSNAVIAVVGCYSQVSPDEIENIQGVNVILGTKYRKEIVELCE--LAKSSNKIINK---- 120

Query: 181 ALDLPKVRRNKFVEILPINV-------------GCLGACTYCKTKHARGHLGSYTVESLV 227
              +  + +NK  E L IN              GC   C+YC   +ARG + S  +  +V
Sbjct: 121 ---VENIGKNKEFEELTINTEHSMTRAYIKIQEGCSQFCSYCIIPYARGPIRSRNIRDIV 177

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 286
              + +  +G KE+ L+     +YG+D   N  I L  ++ ++   D    +R+    P 
Sbjct: 178 LEAKRLADNGFKEIVLTGIHVASYGKDFD-NKDIGLIDVIEDIANIDKIKRIRLSSLEPR 236

Query: 287 FI----LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
            +    L+ L ++ +   H       H+ +QSGSD++L +MNR+Y    +   ++ + E 
Sbjct: 237 IVDKKFLDRLSQVEQFCDH------FHLSLQSGSDSILQSMNRKYDTHLYERTINLIREY 290

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 401
            P   I TDII GFPGETDEDF QT+N + + KF ++H+ ++  R GT A++MK ++P  
Sbjct: 291 YPNAAITTDIIVGFPGETDEDFEQTLNFVDKIKFSKIHVFKYSNRKGTVASKMKNQIPGL 350

Query: 402 VVKKRSRELTSVFEAFT 418
           V K+RS+ L    + +T
Sbjct: 351 VKKERSQRLIEKSKYYT 367


>gi|256545382|ref|ZP_05472745.1| Fe-S oxidoreductase [Anaerococcus vaginalis ATCC 51170]
 gi|256398943|gb|EEU12557.1| Fe-S oxidoreductase [Anaerococcus vaginalis ATCC 51170]
          Length = 432

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/374 (31%), Positives = 193/374 (51%), Gaps = 34/374 (9%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           +T  +KT GC  NQ +SE +       G+   +  E ADI++INTCTV + S       I
Sbjct: 3   KTFNIKTLGCKVNQYESEAIEELFKKRGFEKKE--ENADIYVINTCTVTNMSDRKSRQTI 60

Query: 119 AKCKSAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL 174
           +K +   K  V+A  GC  Q   D +K+++GV I+ G +  + VV++ E  +K +E    
Sbjct: 61  SKARKENKDAVIAVIGCYSQVKADEVKKIDGVDIILGSRNKEEVVDLCENFIKNNE---- 116

Query: 175 HRKKLPALDLPKVRRNKFVEILPINV-------------GCLGACTYCKTKHARGHLGSY 221
                   D+ +    + +E L I+              GC   C+YC   +ARG++ S 
Sbjct: 117 -----KMEDVEEFSIGEAIEDLEISNQADMTRAYIKIQDGCNMYCSYCLIPYARGNIASR 171

Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
            + S++   + +  +G KE+ L+     +YG+D  +++  L++ I      DG   +R+ 
Sbjct: 172 DLVSIIDEAKRLRDNGYKEIVLTGIHVASYGKDFDLDIS-LIDVIEHIAKIDGIERIRLS 230

Query: 282 MTNPPFI-LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
              P  I  E LK + +  +  C +   H+ +QSGSD VL  MNR+YT   F+  VD + 
Sbjct: 231 SMEPRHIDREFLKRMKDT-KKACDH--FHLSLQSGSDDVLKLMNRKYTTKVFKEKVDLIR 287

Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVP 399
           E  P   + TDII GFP E++++  +T N +K+ KF + H+ ++  R GT AA MK +V 
Sbjct: 288 EYFPNAGLTTDIIVGFPNESEKNHEETKNFVKDIKFSKTHLFKYSKRDGTKAASMKNQVD 347

Query: 400 SAVVKKRSRELTSV 413
             + K+RS+EL+ +
Sbjct: 348 GNIKKRRSKELSEI 361


>gi|414078575|ref|YP_006997893.1| tRNA-i(6)A37 modification enzyme MiaB [Anabaena sp. 90]
 gi|413971991|gb|AFW96080.1| tRNA-i(6)A37 modification enzyme MiaB [Anabaena sp. 90]
          Length = 453

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 191/361 (52%), Gaps = 24/361 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  +++  +AD+ L NTCT++  ++  + + + + 
Sbjct: 8   HIITFGCQMNKADSERMAGILEDMGFEWSEDPNQADLILYNTCTIRDNAEQKVYSYLGRQ 67

Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K+      L+VAGCV Q  G+  L+ +  + +V G Q  +R+ +++E    G++V  
Sbjct: 68  AKRKQEEPDLTLIVAGCVAQQEGAALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVA 127

Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
                +   D+ + RR+  V   + I  GC   CTYC   + RG   S T E++   +  
Sbjct: 128 TEEVHIFE-DITQPRRDSQVTAWVNIIYGCNERCTYCVVPNVRGVEQSRTPEAVRSEIEQ 186

Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
           +   G KE+ L  ++  AYGRD+      G +L  L + +  V ++P  G   +R   ++
Sbjct: 187 LARQGYKEITLLGQNIDAYGRDLPGSTPEGRHLHTLTDLLYYVHDVP--GIERIRFATSH 244

Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
           P +  E L K  A++   P V    H+P QSG + +L AM+R YT   +R ++DT+   +
Sbjct: 245 PRYFTERLIKACADL---PKVCEHFHIPFQSGDNELLKAMSRGYTHEKYRRIIDTIRGYM 301

Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
           P   I+ D I GFPGET+  F  T+ L+++  F  V+ + + PRPGTPAA      S  V
Sbjct: 302 PDASISADAIVGFPGETETQFENTLKLVEDIGFDLVNTAAYSPRPGTPAALWDNQLSEEV 361

Query: 404 K 404
           K
Sbjct: 362 K 362


>gi|302380512|ref|ZP_07268977.1| MiaB-like protein [Finegoldia magna ACS-171-V-Col3]
 gi|302311455|gb|EFK93471.1| MiaB-like protein [Finegoldia magna ACS-171-V-Col3]
          Length = 430

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 194/377 (51%), Gaps = 40/377 (10%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T GC  NQ ++E MA      GY +TD+    D++++NTCTV + S       I+K +S 
Sbjct: 8   TLGCKVNQYETEAMAELFVKKGYEITDDYN-CDVFVLNTCTVTNLSDRKSRQQISKIRSE 66

Query: 125 KKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
               V+A  GC  Q S D ++ ++GV+++ G +    +VE+ E  L     +++++    
Sbjct: 67  NSNAVIAVVGCYSQVSPDEIENIQGVNVILGTKYRKEIVELCE--LAKSSNKIINK---- 120

Query: 181 ALDLPKVRRNKFVEILPINV-------------GCLGACTYCKTKHARGHLGSYTVESLV 227
              +  + +NK  E L IN              GC   C+YC   +ARG + S  +  +V
Sbjct: 121 ---VENIGKNKEFEELTINTEHSMTRAYIKIQEGCSQFCSYCIIPYARGPIRSRNIRDIV 177

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 286
              + +  +G KE+ L+     +YG+D   N  I L  ++ ++   D    +R+    P 
Sbjct: 178 LEAKRLADNGFKEIVLTGIHVASYGKDFD-NKDIGLIDVIEDIANIDKIKRIRLSSLEPR 236

Query: 287 FI----LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
            +    L+ L ++ +   H       H+ +QSGSD++L +MNR+Y    +   ++ + E 
Sbjct: 237 IVDKKFLDRLSQVEQFCDH------FHLSLQSGSDSILQSMNRKYDTHLYERTINLIREY 290

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 401
            P   I TDII GFPGETDEDF QT+N + + KF ++H+ ++  R GT A++MK ++P  
Sbjct: 291 YPNAAITTDIIVGFPGETDEDFEQTLNFVDKIKFSKIHVFKYSNRKGTVASKMKNQIPGL 350

Query: 402 VVKKRSRELTSVFEAFT 418
           V K+RS+ L    + +T
Sbjct: 351 VKKERSQRLIEKSKYYT 367


>gi|239616755|ref|YP_002940077.1| MiaB-like tRNA modifying enzyme [Kosmotoga olearia TBF 19.5.1]
 gi|239505586|gb|ACR79073.1| MiaB-like tRNA modifying enzyme [Kosmotoga olearia TBF 19.5.1]
          Length = 425

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/397 (32%), Positives = 202/397 (50%), Gaps = 22/397 (5%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           E +   TFGC  NQ ++E MA +L    + +T +SE ADI++IN+CTV + ++  +  L 
Sbjct: 3   EIVSFFTFGCKLNQYETEGMA-ELLQNDFRVTFDSEIADIFVINSCTVTAEAERKLRQLY 61

Query: 119 AKCKSAKKP---LVVAGCVPQGSR-DLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
            + K AK P    V+ GC  + S  +LK+L    I+G++   ++ E ++E  +   ++  
Sbjct: 62  RRLK-AKNPGSKFVIVGCYSELSAGELKDLGFDLILGIKDKLKIKEFLKENTENTCIK-- 118

Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTV 233
                     P  R   ++    I  GCL  C+YC+ + ARG+ + S   E +   ++T+
Sbjct: 119 --DYFQVTKGPYGRTRAYI---GIQDGCLNNCSYCRIRLARGNKIISKPPEVVAEELKTL 173

Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
           +  G +E+ L+  + G YG   G +L  LL  +V     +G   LR+   +P  +   L 
Sbjct: 174 VEHGFQEIVLTGINIGFYGFGEGYSLISLLKQLV---KIEGEWRLRLSSLDPRLVSNEL- 229

Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
            I  +  +P +   +H+ +QSGSD VL +MNR YT +D   +V             TD+I
Sbjct: 230 -ITFMTDNPKIAQHVHLSLQSGSDKVLKSMNRNYTTNDVEQIVALFRSRNNRFSFTTDVI 288

Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK-RSRELTS 412
            GFPGETD DF +T+  +K  +F +VHI +F PRPGT AARM    S  +KK R+  L  
Sbjct: 289 VGFPGETDTDFVETLEFVKRIRFLKVHIFRFSPRPGTKAARMSNQISGNIKKERATVLKK 348

Query: 413 V-FEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448
           V  EA   YL      E   + E   DGI     ++F
Sbjct: 349 VALEASKDYLNEHVGKESTVLIE-KNDGIFSYGYDEF 384


>gi|212697105|ref|ZP_03305233.1| hypothetical protein ANHYDRO_01670 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675880|gb|EEB35487.1| hypothetical protein ANHYDRO_01670 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 432

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/378 (30%), Positives = 192/378 (50%), Gaps = 40/378 (10%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
           ++T  +KT GC  NQ +SE +       G+   +++  ADI++INTCTV + S       
Sbjct: 2   SKTFNIKTLGCKVNQYESEAIEELFKKRGFEKKEDN--ADIYVINTCTVTNMSDRKSRQT 59

Query: 118 IAKCKSAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
           I+K +   K  ++A  GC  Q   D +KE+EGV IV G +  + VV++ E  +  H    
Sbjct: 60  ISKARKENKDAIIAVIGCYSQVKGDEVKEIEGVDIVLGSRNKEEVVDLCENFISDH---- 115

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV-------------GCLGACTYCKTKHARGHLGS 220
                +   D+ + +  + +E L I+              GC   C+YC   +ARG++ S
Sbjct: 116 -----VKTKDVEEFKIGEAIEDLEISNQADMTRSYIKIQDGCNMYCSYCLIPYARGNIAS 170

Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
             + S++   + +  +G KE+ L+     +YG+D+ +N+  L++ I      DG   +R+
Sbjct: 171 RDLVSIIDEAKRLRDNGFKEIVLTGIHVASYGKDLDLNIS-LIDVIEHIAKIDGIERIRL 229

Query: 281 GMTNPPFI----LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
               P  I    L+ +K+  +   H       H+ +QSGSD VL  MNR+Y    F+  V
Sbjct: 230 SSMEPRHIDREFLQRMKDTKKACDH------FHLSLQSGSDDVLKLMNRKYDTKIFKEKV 283

Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396
           D + E  P   + TDII GFP E++++  QT + ++  KF + H+ ++  R GT AA MK
Sbjct: 284 DLIREYFPNAGLTTDIIVGFPNESEKNHEQTKDFVRNIKFSKTHLFKYSKRDGTKAANMK 343

Query: 397 -KVPSAVVKKRSRELTSV 413
            +V     K+RS+EL+ +
Sbjct: 344 NQVDGNTKKRRSKELSVI 361


>gi|417942472|ref|ZP_12585743.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium breve
           CECT 7263]
 gi|376167121|gb|EHS85983.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium breve
           CECT 7263]
          Length = 483

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/402 (30%), Positives = 194/402 (48%), Gaps = 25/402 (6%)

Query: 51  LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD----NSEEADIWLINTCTV 106
           L+ +  G    ++ T GC  N  DSE +AG L   GY        N  + D+ ++NTC V
Sbjct: 20  LTTQERGKGVFHIHTLGCQMNVHDSERIAGVLETDGYVPATEEQVNDHDLDLIVLNTCAV 79

Query: 107 KSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRDLKELEG---VSIVGVQQIDRV 158
           +  +   M   +      K+      + V GC+ Q  R     +     ++ G + I  +
Sbjct: 80  RENAAERMYGTVGLWAEMKRQRPNLQIAVGGCMAQLDRQKIANKAPWIAAVFGTKNIGDL 139

Query: 159 VEVVEETLKGH--EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARG 216
            +++ +       +V++  + +     LP  R +     + I+VGC   CT+C     RG
Sbjct: 140 PQLLNQNRAADTPQVKVDDQLQQFPSQLPAARASSVSSWVAISVGCNNTCTFCIVPTTRG 199

Query: 217 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDG 274
                    ++  VR  +A+G KEV L  ++  ++G  IG       LL A       DG
Sbjct: 200 KEKDRRPGDILDEVRQCVANGAKEVTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDG 256

Query: 275 STMLRIGMTNPP-FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 333
              +R    +P  F  + ++ +AE    P V   LH+P+QSGSD +L AM R Y  S F 
Sbjct: 257 LERVRFTSPHPAAFTDDVIEAMAET---PNVMHQLHMPLQSGSDKILRAMRRSYRASKFM 313

Query: 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393
           T+++ + + +P  QI+TDII GFPGET+EDF QT++++++ +F       + PRPGTPAA
Sbjct: 314 TILEKVRQAMPDAQISTDIIVGFPGETEEDFQQTLDVVRQARFSSAFTFIYSPRPGTPAA 373

Query: 394 RMKKVPSAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWIT 433
            M++VP  VV+ R   L ++ E  T       EGR   + IT
Sbjct: 374 EMEQVPHDVVQDRFNRLVALQEQITAENLQSFEGRDVEVMIT 415


>gi|428300349|ref|YP_007138655.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calothrix sp. PCC 6303]
 gi|428236893|gb|AFZ02683.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calothrix sp. PCC 6303]
          Length = 454

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/398 (32%), Positives = 204/398 (51%), Gaps = 35/398 (8%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           ++ TFGC  N++DSE MAG L   G+  +++  EA++ L NTC+++  ++  + + + + 
Sbjct: 9   HITTFGCQMNKADSERMAGILEEMGFEWSEDPHEANLVLFNTCSIRDNAEHKVYSYLGRL 68

Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K       LV+AGCV Q  G   L+ +  + +V G Q  +R+ +++++   G++V +
Sbjct: 69  ARRKHDEPDLTLVMAGCVAQQEGESLLRRVPELDLVMGPQHANRLKDLLQQVFDGNQV-V 127

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                    D+ K RR+  V    +NV  GC   CTYC     RG   S T E++   + 
Sbjct: 128 ATEAVYIMEDITKPRRDSSVTSW-VNVIYGCNERCTYCVVPGVRGVEQSRTPEAIRAEME 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
            +   G KEV L  ++  AYGRD+      G NL  L + +  V ++P  G   +R   +
Sbjct: 187 ELGRQGYKEVTLLGQNIDAYGRDLPGTTPEGRNLHTLTDLLYFVHDVP--GIERIRFATS 244

Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
           +P +  E L K  AE+   P V    H+P QSG + VL  M+R YT   +R ++D + E 
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNEVLKRMSRGYTHEKYRRIIDKIREY 301

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
           +P   I+ D I GFPGET+  F  T+ L+ +  F  V+ + + PRP TPAA   +  S  
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLVADIGFDLVNTAAYSPRPNTPAALWDEQLSEE 361

Query: 403 VKK-RSRELTSVF-----EAFTPYLGMEGRVERIWITE 434
           +K+ R ++L  +      E    YL   GRVE I + E
Sbjct: 362 IKQDRLQQLNHLINVTASERSHRYL---GRVEEILVEE 396


>gi|428310522|ref|YP_007121499.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Microcoleus sp. PCC 7113]
 gi|428252134|gb|AFZ18093.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
           [Microcoleus sp. PCC 7113]
          Length = 447

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/398 (31%), Positives = 206/398 (51%), Gaps = 35/398 (8%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
           ++ TFGC  N++DSE MAG L   G+  + +  +A++ L NTCT++  ++  + + +   
Sbjct: 9   HITTFGCQMNKADSERMAGILEDMGFEWSQDPNDANLVLYNTCTIRDNAEQKVYSYLGRQ 68

Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
              K + A   LVVAGCV Q  G   L+ +  + +V G Q  +R+ +++E+   G++V  
Sbjct: 69  AKRKHEQADLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQVFDGNQVVA 128

Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
               ++   D+ K RR+  V    +NV  GC   CTYC   + RG   S T E++   + 
Sbjct: 129 TEPIQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRKDME 186

Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
            +   G KE+ L  ++  AYGRD+      G +L  L   +  V ++P  G   +R   +
Sbjct: 187 ELGQQGYKEITLLGQNIDAYGRDLPGVTESGRHLHTLTELLYYVHDVP--GIERIRFATS 244

Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
           +P +  E L +  AE+   P V    H+P QSG + +L AM R YT   +R ++D + E 
Sbjct: 245 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNDILKAMARGYTQEKYRRIIDKIREY 301

Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
           +P   I+ D I GFPGET+  F  T+ L+++  F  ++ + + PRPGTPAA  +   S  
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLVEDIGFDLLNTAAYSPRPGTPAALWENQLSEE 361

Query: 403 VK----KRSREL--TSVFEAFTPYLGMEGRVERIWITE 434
           VK    +R   L  T   +A   YL   GR+E + + +
Sbjct: 362 VKSDRLQRLNHLVSTKAAQASQRYL---GRIEEVLVED 396


>gi|320353884|ref|YP_004195223.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfobulbus propionicus
           DSM 2032]
 gi|320122386|gb|ADW17932.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfobulbus propionicus
           DSM 2032]
          Length = 450

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 195/386 (50%), Gaps = 30/386 (7%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
           ++ +Y+KTFGC  N+ DSE M   L+  GY    + E AD+ LINTC+++  ++  + +L
Sbjct: 2   SKNLYIKTFGCQMNERDSEIMEQMLAQEGYVPAASPEGADVVLINTCSIREKAEQKVFSL 61

Query: 118 IAKCKS--AKKP---LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGH 169
           + + +   A+ P   L V GCV Q  G R  + +  V  IVG QQI ++ E++    +G 
Sbjct: 62  LGQLREEKARNPSLLLGVTGCVAQQEGERIRERMPHVDLIVGTQQIYQLPEMLARLTQGM 121

Query: 170 EVRLLHRKKLPALDLPKVRR-----------NKFVEILPINVGCLGACTYCKTKHARGHL 218
             R        +  +P  ++           + F   + I  GC   C+YC     RG  
Sbjct: 122 TTRETATDLEGSFAIPPFQKLLINTPPSPAPHSFRRFVTIMQGCNNYCSYCVVPGTRGRE 181

Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-----DIGVNLPILLNAIVAELPPD 273
            S  V  ++  V  +++ GVKE+ L  ++  +YG+     D  V+ P LL  +      +
Sbjct: 182 ISRPVADIMEEVEILVSQGVKEITLLGQNVNSYGKTNKVADTEVDFPQLLRQVAL---VN 238

Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 333
           G   LR   ++P  + E L      +   C +   H+PVQSGS+AVL  MNR+YT+ ++ 
Sbjct: 239 GLRRLRFTTSHPKDLSEALMRCFAEIDILCPH--FHLPVQSGSNAVLQRMNRKYTVENYL 296

Query: 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393
             V +L  L P + +ATDII GFPGET+ DF  T++L++  +F      ++  RP T +A
Sbjct: 297 EKVASLRRLCPDIALATDIIVGFPGETEADFQATMDLLQTVRFHGSFSFKYSDRPHTRSA 356

Query: 394 RMK-KVPSAVVKKRSRELTSVFEAFT 418
               K+P  V  +R  E  S+ ++ +
Sbjct: 357 EFSDKIPEEVKARRLMEFQSLQDSIS 382


>gi|169827222|ref|YP_001697380.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lysinibacillus
           sphaericus C3-41]
 gi|229890559|sp|B1HR59.1|MIAB_LYSSC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|168991710|gb|ACA39250.1| UPF0004 protein [Lysinibacillus sphaericus C3-41]
          Length = 514

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 190/372 (51%), Gaps = 16/372 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD---- 115
           T Y++T+GC  N+ D+E MAG     GY  T+  EEAD+ L+NTC ++  +++ +     
Sbjct: 69  TFYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEIIEEADVVLLNTCAIRENAENKVFGELG 128

Query: 116 -TLIAKCKSAKKPLVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
             L  K K+ +  + V GC+ Q     ++ L+    V +V G   I R+  +++E     
Sbjct: 129 FLLKYKRKNPEMLIGVCGCMSQEESVVNKILRSYPHVDMVFGTHNIHRLPNILKEAYMSK 188

Query: 170 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           E  V +  ++     +LPK R       + I  GC   CTYC   + RG   S   E ++
Sbjct: 189 EMVVEVWSKEGDVIENLPKKRLGSIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEII 248

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR + A G +E+ L  ++  AYG+D   ++   L  ++  L       +R   ++P  
Sbjct: 249 AEVRELAAAGYQEIMLLGQNVNAYGKDFE-DIEYRLGDLMDALRKIDIPRIRFTTSHPRD 307

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             +HL E+  + +   +   +H+PVQSGS+ +L  M R+YT   F T+V+ +   +P + 
Sbjct: 308 FDDHLIEV--LAKRGNLVEHIHLPVQSGSNDILKIMARKYTREHFLTLVEKIKAAIPEVT 365

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 406
           + TDII G+P ET+E F +T++L +E  F       + PR GTPAA+M   VP  V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYREVGFEAAFTYIYSPREGTPAAKMVDNVPEEVKKER 425

Query: 407 SRELTSVFEAFT 418
            + L  V   ++
Sbjct: 426 LQRLNEVVGEYS 437


>gi|297584113|ref|YP_003699893.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus selenitireducens
           MLS10]
 gi|297142570|gb|ADH99327.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus selenitireducens
           MLS10]
          Length = 516

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 192/364 (52%), Gaps = 16/364 (4%)

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
           ++T+GC  N+ DSE MAG L   G+  T N +EAD+ L+NTC ++  +++ +   I   K
Sbjct: 76  IRTYGCQMNEHDSENMAGILLEMGFESTVNQDEADVILLNTCAIRENAENKVFGEIGNLK 135

Query: 123 SAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
             K+      + V GC+ Q     +R L++ + V ++ G   I R+ E+++  +   E  
Sbjct: 136 VMKRENPGLIVGVCGCMSQEESVVNRILQKHQHVDLIFGTHNIHRLPELIKNAIFSKEMI 195

Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           V +  ++     ++P+ R+ +F   + I  GC   CTYC     RG   S   E ++  V
Sbjct: 196 VEVWSQEGDIIENMPRARKGQFQGWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDVIEEV 255

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           R +  +G KE+ L  ++  AYG+D+ ++    L  ++ ++   G   +R   ++P    +
Sbjct: 256 RHLARNGYKEITLLGQNVNAYGKDL-LDSSYRLADLLDDIRDIGIPRVRFTTSHPWDFDD 314

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
            L ++  + +   +   +H+PVQSG++ VL  MNR+YT  ++  + D + E +P   + T
Sbjct: 315 ELIDV--IAKGGNMMEHIHLPVQSGNNDVLKIMNRKYTREEYVALADKIKEKIPHATLTT 372

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
           DII G+P ET+E F  T++L+KE  F   +   +  R GTPAA M+  VP  V K R + 
Sbjct: 373 DIIVGYPNETEEQFQDTLSLVKEMAFDAAYTYVYSAREGTPAAAMEDDVPKEVKKDRLQR 432

Query: 410 LTSV 413
           L  V
Sbjct: 433 LNEV 436


>gi|434400303|ref|YP_007134307.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Stanieria
           cyanosphaera PCC 7437]
 gi|428271400|gb|AFZ37341.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Stanieria
           cyanosphaera PCC 7437]
          Length = 457

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/357 (31%), Positives = 186/357 (52%), Gaps = 22/357 (6%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           TFGC  N++DSE MAG L   G+   ++  EAD+ L NTCT++  ++  + + + +    
Sbjct: 12  TFGCQMNKADSERMAGILEEMGFRWAEDPNEADLVLYNTCTIRDNAEQKVYSYLGRQAKR 71

Query: 125 KKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
           K       L+VAGCV Q  G + L+ +  + +V G Q  +R+ +++++   G++V     
Sbjct: 72  KHEQPDLTLIVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVATEP 131

Query: 177 KKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
             +   D+ K RR+  V   + I  GC   C+YC   + RG   S T E++   +  +  
Sbjct: 132 IHI-VEDITKPRRDSTVTAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIRAEMEELGR 190

Query: 236 DGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPF 287
            G KE+ L  ++  AYGRD+      G +   L + +  V ++P  G   +R   ++P +
Sbjct: 191 QGYKEITLLGQNIDAYGRDLPGSTETGRHQHTLTDLLYYVHDIP--GIDRIRFATSHPRY 248

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             E L +  + L  P V    H+P QSG + VL AM R YT   +R+++  + + +P   
Sbjct: 249 FTERLIKACQEL--PKVCEHFHIPFQSGDNEVLKAMKRGYTQEKYRSIIAKIRQYMPDAA 306

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
           I+ D I GFPGET+  F  T+ L++E  F Q++ + + PRPGTPAA      S  VK
Sbjct: 307 ISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAALWDNQLSEEVK 363


>gi|384196818|ref|YP_005582562.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium breve
           ACS-071-V-Sch8b]
 gi|333110554|gb|AEF27570.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium breve
           ACS-071-V-Sch8b]
          Length = 483

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/402 (30%), Positives = 195/402 (48%), Gaps = 25/402 (6%)

Query: 51  LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD----NSEEADIWLINTCTV 106
           L+ +  G    ++ T GC  N  DSE +AG L   GY        N  + D+ ++NTC V
Sbjct: 20  LTTQERGKGVFHIHTLGCQMNVHDSERIAGVLETDGYVPATEEQVNDHDLDLIVLNTCAV 79

Query: 107 KSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRDL---KELEGVSIVGVQQIDRV 158
           +  +   M   +      K+      + V GC+ Q  R     K     ++ G + I  +
Sbjct: 80  RENAAERMYGTVGLWAEMKRQRPNLQIAVGGCMAQLDRQKIANKAPWVAAVFGTKNIGDL 139

Query: 159 VEVVEETLKGH--EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARG 216
            +++ +       +V++  + +     LP  R ++    + I+VGC   CT+C     RG
Sbjct: 140 PQLLNQNRATDTPQVKVDDQLQQFPSQLPAARASRVSSWVAISVGCNNTCTFCIVPTTRG 199

Query: 217 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDG 274
                    ++  VR  +A+G KEV L  ++  ++G  IG       LL A       DG
Sbjct: 200 KEKDRRPGDILDEVRQCVANGAKEVTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDG 256

Query: 275 STMLRIGMTNPP-FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 333
              +R    +P  F  + ++ +AE    P V   LH+P+QSGSD +L AM R Y  S F 
Sbjct: 257 LERVRFTSPHPAAFTDDVIEAMAET---PNVMHQLHMPLQSGSDKILRAMRRSYRASKFM 313

Query: 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393
           T+++ + + +P  QI+TDII GFPGET+EDF QT++++++ +F       + PRPGTPAA
Sbjct: 314 TILEKVRQAMPDAQISTDIIVGFPGETEEDFQQTLDVVRQARFSSAFTFIYSPRPGTPAA 373

Query: 394 RMKKVPSAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWIT 433
            M++VP  VV+ R   L ++ E  T       EGR   + IT
Sbjct: 374 EMEQVPHDVVQDRFDRLVALQEQITAENLQSFEGRDVEVMIT 415


>gi|373451917|ref|ZP_09543835.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium sp. 3_1_31]
 gi|371967349|gb|EHO84820.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium sp. 3_1_31]
          Length = 479

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/380 (29%), Positives = 193/380 (50%), Gaps = 24/380 (6%)

Query: 62  YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
           Y++T+GC  N+ DSE +AG L    +   ++ E+AD+ L+NTC ++  ++  +   I   
Sbjct: 46  YLRTYGCQANERDSETLAGILEELMFTPVEHPEQADLILLNTCAIRKNAEDKVLGEIGSL 105

Query: 122 KSAKKP-----LVVAGCVPQGSRD-----LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
           K  K+        + GC+ Q   D     L++   V+++ G   + R+ E++ E + GH+
Sbjct: 106 KRLKRSNPDLIFGLCGCMAQ-EEDVVQVLLEKYRHVNLIFGTHNLHRLPELLYEVMVGHK 164

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +L ++     +LP  R  K    + I  GC   CTYC   + RG   S  +E ++ 
Sbjct: 165 RSVEVLSKEGDVIENLPVRRFGKHKAWVNIMYGCDKFCTYCIVPYTRGKERSRAMEDVLQ 224

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            +R +  DG KE+ L  ++  +YG+D+ +        ++ E    G   +R   ++P   
Sbjct: 225 EIRQLKQDGYKEITLLGQNVNSYGKDLHIEGG--FAKLLEETAKIGIERIRFTTSHPWDF 282

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + + ++  + R+  +  F+H+PVQSG D +L  M R YT + + T+   + E +P   I
Sbjct: 283 SDEMIDV--IARYDNIMPFIHLPVQSGDDEILKIMGRRYTNAQYLTLFHKIKERMPECAI 340

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS- 407
           +TDII GFP E++  F  T++L+KE +F       + PR GTPAARM    S  VK+R  
Sbjct: 341 STDIIVGFPNESEGQFQHTLDLVKECQFDNAFTFIYSPREGTPAARMADSVSLEVKQRRL 400

Query: 408 RELTSVFEAFT-----PYLG 422
            EL + +  +       YLG
Sbjct: 401 AELNACWNQYAHVKNEAYLG 420


>gi|411006298|ref|ZP_11382627.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           globisporus C-1027]
          Length = 497

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 187/369 (50%), Gaps = 16/369 (4%)

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           ++T+GC  N  DSE ++G L   GY  A   +  +AD+ + NTC V+  + + +   + +
Sbjct: 9   VRTYGCQMNVHDSERLSGLLEGAGYVRAPEGSDGDADVVVFNTCAVRENADNKLYGNLGR 68

Query: 121 CK--SAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
                 K+P   + V GC+ Q  RD  +K    V +V G   I ++  ++E      E +
Sbjct: 69  LAPMKTKRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERARIQEEAQ 128

Query: 173 LLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           +   + L A    LP  R + +   + I+VGC   CT+C     RG         ++  +
Sbjct: 129 IEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTGDILAEI 188

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
             ++A+GV E+ L  ++  AYG DIG +       + A    +G   +R    +P    +
Sbjct: 189 EALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERVRFTSPHPRDFTD 247

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
            +  IA +   P V   LH+P+QSGSD VL AM R Y    F  +++ +   +P   I+T
Sbjct: 248 DV--IAAMAETPNVMPQLHMPMQSGSDTVLKAMRRSYRQERFLGIIEKVRAAMPDAAIST 305

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
           DII GFPGET+EDF QT++ ++E +F      Q+  RPGTPAA M  ++P  VV++R   
Sbjct: 306 DIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAADMDGQIPKEVVQERYMR 365

Query: 410 LTSVFEAFT 418
           L+++ E  +
Sbjct: 366 LSALQEQIS 374


>gi|428774566|ref|YP_007166354.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobacterium stanieri
           PCC 7202]
 gi|428688845|gb|AFZ48705.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobacterium stanieri
           PCC 7202]
          Length = 451

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/394 (30%), Positives = 197/394 (50%), Gaps = 27/394 (6%)

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
           + TFGC  N++DSE MAG L   GY  T++  EA I + NTC+++  ++  + + + K  
Sbjct: 10  ITTFGCQMNKADSERMAGILETMGYDFTEDPNEASIIVYNTCSIRDNAEQKVYSYLGKQA 69

Query: 123 SAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLL 174
             K       LVVAGCV Q  G + L+ +  +  I+G Q  +R+  ++++   G+++   
Sbjct: 70  KRKHKEGDLTLVVAGCVAQQEGEQLLRRVPEIDLIMGPQHANRLDSLLDQVFAGNQIVAT 129

Query: 175 HRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
               +   D+ K RR   V   + I  GC   C+YC   + RG   S T E++   +  +
Sbjct: 130 EPVHIFE-DITKPRRESSVSAWVNIIYGCNERCSYCVVPNTRGVEQSRTPEAIKAEIEEL 188

Query: 234 IADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
              G KE+ L  ++  AYGRD+      G +   L + +      +G   +R   ++P +
Sbjct: 189 ARQGYKEITLLGQNIDAYGRDLPGTTETGRHKHTLTDLLYFIHDVEGIERIRFATSHPRY 248

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             E L +    L  P V    H+P QSG + VL AM R YT   +R +++ +   +P   
Sbjct: 249 FTERLIKACHEL--PKVCEHFHIPFQSGDNEVLKAMKRGYTHERYRDIINKIRGYMPHAA 306

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK--- 404
           I+ D I GFPGET+E F  T+ L+++  F Q++ + + PRP TPAA  +   S  VK   
Sbjct: 307 ISADAIVGFPGETEEQFENTLRLVEDIGFDQLNTAAYSPRPQTPAAEWENQLSEEVKGDR 366

Query: 405 -KRSRELTSV--FEAFTPYLGMEGRVERIWITEI 435
             R   L SV   E    YL   G++E++ + ++
Sbjct: 367 LARLNHLVSVKAAERSQRYL---GKIEQVLVEDV 397


>gi|402302017|ref|ZP_10821137.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. FOBRC9]
 gi|400381004|gb|EJP33808.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. FOBRC9]
          Length = 436

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/360 (32%), Positives = 188/360 (52%), Gaps = 32/360 (8%)

Query: 66  FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
           +GC  N +D+E M GQL + GY  T+ + +AD+ LINTC V+  ++  +   I + K  K
Sbjct: 11  YGCQMNIADAERMEGQLQSVGYTRTEETADADVILINTCCVRESAEDKVYGKIGEIKKLK 70

Query: 126 K--PLVV---AGCVPQGSRD--LKELEGVSIV----GVQQIDRVVEVVE-------ETLK 167
           +  P ++   AGC+ Q   D  ++    +  V     VQ++ R++  +        +T+ 
Sbjct: 71  ERNPYLIFGIAGCMAQKEGDNLMQRAPHIDFVLGTGKVQELTRIIAEIRAEHSPVVDTVI 130

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           G+ +         A +LP  R  KF   +PI  GC   CT+C   + RG   S T E +V
Sbjct: 131 GNTI---------AENLPIARGGKFSAWVPIMYGCNNFCTFCIVPYVRGRERSRTPEDVV 181

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR  +A+G  EV L  ++  +YG+D        L  +V E+  +G   +R   ++P  
Sbjct: 182 AEVRRAVAEGYTEVTLLGQNVNSYGKDHKAADFADLLRMVDEV--EGIRRVRFMTSHPKD 239

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           I + L +     RH C +  +H+PVQ GS+ +L AMNR YT+  +R  V  + E +P   
Sbjct: 240 ISDKLIDTIRNGRHLCEH--IHLPVQYGSNRILKAMNRVYTVESYRERVRRVREALPEAS 297

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TD+I GFPGET+EDF  T++ ++E ++   +   +  R GTPAARM+ +VP  V   R
Sbjct: 298 LTTDLIVGFPGETEEDFAATLDFLREIRYDSAYTFLYSKRSGTPAARMEDQVPDDVKHAR 357


>gi|404495733|ref|YP_006719839.1| tRNA (2-methylthio-N6-threonylcarbamyl-A37) methylthiotransferase
           [Geobacter metallireducens GS-15]
 gi|418066379|ref|ZP_12703743.1| RNA modification enzyme, MiaB family [Geobacter metallireducens
           RCH3]
 gi|78193349|gb|ABB31116.1| tRNA (2-methylthio-N6-threonylcarbamyl-A37) methylthiotransferase
           [Geobacter metallireducens GS-15]
 gi|373560640|gb|EHP86897.1| RNA modification enzyme, MiaB family [Geobacter metallireducens
           RCH3]
          Length = 431

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 125/370 (33%), Positives = 188/370 (50%), Gaps = 22/370 (5%)

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV--KSPSQSAMDT 116
           + + + T GC  NQ +S  M   L   G+ +    E+ADI++INTCTV  K+ ++S    
Sbjct: 2   QRVAISTLGCKINQFESAAMTESLGREGFRVVPFDEDADIYVINTCTVTAKTDAESRRLI 61

Query: 117 LIAKCKSAKKPLVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL- 173
             A  ++    +VV GC  Q + D +K+L GV+ +VG  +   + E++ +     +V + 
Sbjct: 62  RRALRRNPAARVVVTGCYAQVAPDAVKDLPGVALVVGNSEKRSIGELLRDAAPAEKVMVS 121

Query: 174 -LHRKKLPALDLPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
            + R++        +R   F E     L +  GC   C+YC   +ARG   S +    + 
Sbjct: 122 DISRERTA----EGLRLESFAEHTRAFLQVQNGCDAFCSYCIVPYARGRSRSVSFSEALA 177

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
            +R   A G +EV L+    GAYG D+    NL  LL A  AE        LR+G   P 
Sbjct: 178 GIRNFAAQGFREVVLTGIHLGAYGLDLAPPTNLLALLEASEAE---KAVPRLRVGSVEPN 234

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
            + + L +   + R   V   LH+P+QSG D VL  M R YT + FR  V+ L+ +VP +
Sbjct: 235 ELTDALVDF--LARSETVCPHLHIPLQSGDDRVLERMGRRYTAAFFRERVERLVAVVPDI 292

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
            I  D+I GFPGETDE+F  TV LI+E     +H+  +  R GT AARM+ +V   V++ 
Sbjct: 293 FIGCDVIAGFPGETDEEFQNTVRLIEELPVASLHVFPYSRREGTAAARMEGQVDGKVIRG 352

Query: 406 RSRELTSVFE 415
           R+  L  V E
Sbjct: 353 RAEILREVGE 362


>gi|339443376|ref|YP_004709381.1| hypothetical protein CXIVA_23120 [Clostridium sp. SY8519]
 gi|338902777|dbj|BAK48279.1| hypothetical protein CXIVA_23120 [Clostridium sp. SY8519]
          Length = 490

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/361 (31%), Positives = 184/361 (50%), Gaps = 19/361 (5%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  ++TFGC  N  DSE + G L A GY  TD  E+AD  + NTCTV+  + + +   + 
Sbjct: 53  TFCIRTFGCQMNARDSEKLTGILEAAGYRKTDR-EDADFVVYNTCTVRENANNKVYGHLG 111

Query: 120 KCKSAKKP-----LVVAGCVPQGSRDLKEL-EGVSIV----GVQQIDRVVEVVEETLKGH 169
                KK      + + GC+ Q    ++ + E  S V    G   I +  E++ +TL+  
Sbjct: 112 YLHGYKKKNPHMVIALCGCMMQEETVVQRIRESYSFVDLIFGTHNIYKFAELIVQTLESD 171

Query: 170 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
              V +    +    +LP  R   F   + I  GC   C+YC   + RG   S   E ++
Sbjct: 172 RMVVDVWDAPQDIVENLPNERTYSFKTGVNIMFGCNNFCSYCIVPYVRGRERSRKPEEIL 231

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 286
             +R  +ADGVKEV L  ++  +YG+  G+   I    ++ ++   DG   +R   ++P 
Sbjct: 232 QEIRNFVADGVKEVMLLGQNVNSYGK--GLPEEITFARLLQQVEQIDGLERIRFMTSHPK 289

Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
            + + L  +    R  C +  +H+P+QSGS  +L AMNR YT   +  +VD +   +P +
Sbjct: 290 DLSDELIGVMASSRKICRH--IHLPLQSGSSRILKAMNRRYTKESYLALVDRIRTAMPDI 347

Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
            + TDII GFPGETDEDF +T+++++  +F       +  R GTPAA M+ +VP  V+ +
Sbjct: 348 ALTTDIIVGFPGETDEDFEETMDVVRRVQFDSAFTFIYSKRTGTPAASMEDQVPEDVINR 407

Query: 406 R 406
           R
Sbjct: 408 R 408


>gi|452995323|emb|CCQ93093.1| enzyme for ms(2)i(6)A formation for tRNA modification [Clostridium
           ultunense Esp]
          Length = 440

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/359 (30%), Positives = 187/359 (52%), Gaps = 16/359 (4%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T+GC  N+ DSE ++  L   GY  TDN EE+D  + NTC V+  ++  +   +   K  
Sbjct: 10  TYGCQMNEHDSEKISWILETMGYKWTDNKEESDFIIYNTCLVRENAELKVYGQLGALKDL 69

Query: 125 KKP-----LVVAGCVPQG--SRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VR 172
           K+      L V GC+ Q   +RD  L + + V I+ G   I ++ +++    + +   V 
Sbjct: 70  KRKNPDLILAVCGCMMQQEEARDIILSKYKHVDIIFGTGNIHKLPQLISRYHQINRTVVD 129

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           ++   +    D+   R+  F   + I  GC   CTYC   + RG   S   E+++  +  
Sbjct: 130 IVEDNREIVEDIEANRKYSFKAFVNIMYGCNNFCTYCIVPYTRGREKSRKPENIIKEIED 189

Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
           +   G KE+ L  ++  +YG+ +G +     N +      +G   +R   ++P  + + L
Sbjct: 190 LAKKGYKEITLLGQNVNSYGKTLGYDYS-FANLLEDVNKIEGIARIRFMTSHPKDLSDEL 248

Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
             I  + +   V   LH+PVQSGS+ VL  MNR+YT  D+ T+++ +   VP + I+TDI
Sbjct: 249 --IQSIAKLDKVCEHLHLPVQSGSNKVLKEMNRKYTKGDYLTLIEKIKNAVPDIAISTDI 306

Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL 410
           I GFPGET+EDFN+T++LIK+ ++       +  R GT AA+M+ +VP  +  +R + L
Sbjct: 307 IVGFPGETEEDFNETLDLIKKVRYDSAFTFLYSVRKGTIAAKMENQVPDEIKHERFQRL 365


>gi|325295239|ref|YP_004281753.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065687|gb|ADY73694.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 437

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/371 (33%), Positives = 195/371 (52%), Gaps = 29/371 (7%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
            Y+KTFGC  N +DSE MAG L + GY  TD  EEAD+ ++NTC+V++   +   + I  
Sbjct: 4   FYIKTFGCQMNVNDSEKMAGILRSLGYEKTDLPEEADLIIVNTCSVRAKPDNKAYSFIGN 63

Query: 121 CKSAKKP-----LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
            K  KK      + V GCVPQ  ++ +   + V +V G     ++ E+++   K   V +
Sbjct: 64  LKKIKKEKPETIIAVGGCVPQKEKESILRFKHVDLVFGTFNFMKIGELIKRAKKERVVEI 123

Query: 174 LHRK-----KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
           L+ K     K+P +D      N +V  + +  GC   C+YC     RG   S   E ++ 
Sbjct: 124 LNSKIPEEDKVPLID--SYLENPYVAYVTVQRGCNRFCSYCIVPFTRGRERSVKPELVLK 181

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP--- 285
            V+ +   GVKEV L  ++   Y  + G++L  LL  +V+E+  +G   +R   ++P   
Sbjct: 182 EVKRLAERGVKEVHLLGQNVDFYNYE-GIDLADLL-YMVSEV--EGIERIRFTTSHPCGF 237

Query: 286 -PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
              I+E +K I +V    C Y  +H+P QSGS  +L  MNR YT  ++   V  L E +P
Sbjct: 238 NRKIVEAMKNIEKV----CPY--VHLPPQSGSTKILERMNRGYTREEYTEKVMMLKEEIP 291

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
            + ++ D I GFPGET +DF +T++L++   F Q  + ++ PRP T A+  K  VP    
Sbjct: 292 KVALSGDFIVGFPGETTKDFEETLSLVETCVFDQGFVFEYSPRPFTKASNFKDDVPKEEK 351

Query: 404 KKRSRELTSVF 414
            +R +EL ++ 
Sbjct: 352 NRRLQELQNLL 362


>gi|239991228|ref|ZP_04711892.1| hypothetical protein SrosN1_28246 [Streptomyces roseosporus NRRL
           11379]
          Length = 497

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 188/369 (50%), Gaps = 16/369 (4%)

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           ++T+GC  N  DSE ++G L   GY  A   +  +AD+ + NTC V+  + + +   + +
Sbjct: 9   VRTYGCQMNVHDSERLSGLLEGAGYVRAPEGSDGDADVVVFNTCAVRENADNKLYGNLGR 68

Query: 121 CK--SAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
                 K+P   + V GC+ Q  RD  +K    V +V G   I ++  ++E      E +
Sbjct: 69  LAPMKTKRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERARIQEEAQ 128

Query: 173 LLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           +   + L A    LP  R + +   + I+VGC   CT+C     RG         ++  +
Sbjct: 129 IEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTGDILAEI 188

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
             ++A+GV E+ L  ++  AYG DIG +       + A    +G   +R    +P    +
Sbjct: 189 EALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERVRFTSPHPRDFTD 247

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
            +  IA +   P V   LH+P+QSGSD++L AM R Y    F  +++ +   +P   I+T
Sbjct: 248 DV--IAAMAETPNVMPQLHMPMQSGSDSILKAMRRSYRQERFLGIIEKVRAAMPDAAIST 305

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
           DII GFPGET+EDF QT++ ++E +F      Q+  RPGTPAA M  ++P  VV++R   
Sbjct: 306 DIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAADMDGQIPKEVVQERYMR 365

Query: 410 LTSVFEAFT 418
           L+++ E  +
Sbjct: 366 LSALQEQIS 374


>gi|403378724|ref|ZP_10920781.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Paenibacillus
           sp. JC66]
          Length = 493

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 193/376 (51%), Gaps = 26/376 (6%)

Query: 57  GTETIYM-KTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
           G +  YM +T+GC  N+ D+E M G L A G+  TD+ ++AD+ L+NTC ++  ++  + 
Sbjct: 47  GKDKYYMIRTYGCQMNEHDTETMKGMLEAMGFQSTDDKQQADLILLNTCAIRENAEDKVF 106

Query: 116 TLIAKCKSAK--KP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEET 165
             +   K+ K  +P   L V GC+ Q    +  +         I G   I R+ ++++E 
Sbjct: 107 GELGHLKTLKTERPSLLLGVCGCMSQEEAVVNRITQKHPFVDMIFGTHNIHRLPQLLKEA 166

Query: 166 LKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
               E  V +  ++     +LPK +R      + I  GC   CTYC   + RG   S   
Sbjct: 167 YFSKEMVVEVWSKEGDIIENLPK-KREGVKAWVNIMYGCDKFCTYCIVPYTRGKERSRRP 225

Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRD---IGVNLPILLNAIVA-ELPPDGSTMLR 279
           + ++  VR +   G +E+ L  ++  AYG+D   I      L+N I   ++P      +R
Sbjct: 226 QDVLAEVRDLARQGFQEIMLLGQNVNAYGKDFDDIDYRFGDLMNDISKIDIP-----RVR 280

Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
              ++P    +HL E+  + R   +   +H+PVQSGS A+L  M+R+YT   F  +V  +
Sbjct: 281 FTTSHPRDFDDHLIEV--LSRKGNLMEHIHLPVQSGSSAILKKMSRKYTREGFLELVAKI 338

Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KV 398
            + +P + + TDII GFPGETDE F +T++L++E +F       + PR GTPAA M+  V
Sbjct: 339 KKAIPDVVLTTDIIVGFPGETDEQFEETMSLVREVQFDSAFTFIYSPRDGTPAAAMEDNV 398

Query: 399 PSAVVKKRSRELTSVF 414
           P  V K+R + L  + 
Sbjct: 399 PETVKKERLQRLNELL 414


>gi|329122066|ref|ZP_08250674.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister micraerophilus
           DSM 19965]
 gi|327466873|gb|EGF12389.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister micraerophilus
           DSM 19965]
          Length = 445

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 197/390 (50%), Gaps = 33/390 (8%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
            T+ +   T GC  NQ DS+ M       GY   ++SE AD+++INTC+V S        
Sbjct: 10  NTKKVSFITLGCKVNQYDSDAMRTLFIHRGYKPVEHSEVADVYIINTCSVTSIGDRKSRQ 69

Query: 117 LIAKCKSAKKPLVVA--GCVPQ-GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVR 172
           +I K +      V+A  GC  Q    +L+++  V  IVG Q  +++V+ +EE  K     
Sbjct: 70  VIRKIRRNNPDAVIAATGCYAQVAPEELEKMGDVDVIVGHQNRNKIVDYIEEAEKSE--- 126

Query: 173 LLHRKKLPAL-DLPKVRRNKFVEILP-----------INVGCLGACTYCKTKHARGHLGS 220
               K + A+ D+  +R  + + + P           +  GC   CT+C   +ARG L S
Sbjct: 127 ----KTVNAVKDIMSIREYENLTVDPEGEVKARAFVKVQEGCDNYCTFCIIPYARGRLKS 182

Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTML 278
              E  V  ++ ++  G +EV L+    G YG+D+  G +L  L++ ++ ++P      +
Sbjct: 183 RKQEDAVDEIKKLVEKGYREVVLTGIHLGNYGKDLRNGTSLSTLVSELL-KIP--NLLRI 239

Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
           R+G      + + L  I +  +  C +  LH+P+QSGSDAVL +MNR Y L  ++ ++  
Sbjct: 240 RLGSIESVELSDELINIIKNEKRVCHH--LHLPLQSGSDAVLKSMNRHYRLRQYKDLIAM 297

Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 398
           L + +P + + TD+I GFPGET+E+F +T+N + E KF  +H+  F  R GTPAA     
Sbjct: 298 LRKKIPNLALTTDLIVGFPGETEENFKETLNTLHELKFSAIHVFPFSKRTGTPAAMY--- 354

Query: 399 PSAVVKKRSRELTSVFEAFTPYLGMEGRVE 428
           P+ +  +  ++     +     +  E R E
Sbjct: 355 PNQITNEEKKKRVHRVQELEKKISKEFRCE 384


>gi|333370927|ref|ZP_08462897.1| tRNA-I(6)A37 modification enzyme MiaB [Desmospora sp. 8437]
 gi|332976877|gb|EGK13699.1| tRNA-I(6)A37 modification enzyme MiaB [Desmospora sp. 8437]
          Length = 495

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 187/357 (52%), Gaps = 16/357 (4%)

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
           +KT+GC  N  DSE +AG L   GY  T+  EEA + LINTC ++  ++  +   I + K
Sbjct: 53  IKTYGCQMNVHDSETIAGILELMGYRPTEVEEEAAVILINTCAIRENAEDKVFGEIGRLK 112

Query: 123 SAK--KPLVV---AGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
           + K  KP +V    GC+ Q     +R L++ + V ++ G   I R+  ++ E L   E  
Sbjct: 113 TLKTEKPELVLGMCGCMSQEESVVNRILQKHQHVDLIFGTHNIHRLPHLLREALMSKEMV 172

Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           V +  ++     +LPKVR +     + I  GC   CTYC   + RG   S   E ++  +
Sbjct: 173 VEVWSKEGDIVENLPKVREDGLKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVLAEI 232

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           R +   G +EV L  ++  AYG+D   +       ++ ++   G   +R   ++P    +
Sbjct: 233 RDLARKGYREVTLLGQNVNAYGKDFE-DRDYRFGDLMEDVRKIGIPRVRFTTSHPRDFDD 291

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
           HL E+  + R   +   +H+P QSG++A+L  M R+YT   F  +V  +   +P + + T
Sbjct: 292 HLIEV--LARRGNLVEHIHLPAQSGNNAILKIMARKYTRERFLELVAKIKAAIPDVVLTT 349

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           DII G+PGET+E F  T++L++E +F       + PR GTPAA+MK  VP  V K+R
Sbjct: 350 DIIVGYPGETEEQFEDTLSLMREVEFDSAFTFIYSPREGTPAAKMKDDVPMNVKKER 406


>gi|373454708|ref|ZP_09546572.1| ribosomal protein S12 methylthiotransferase RimO [Dialister
           succinatiphilus YIT 11850]
 gi|371935571|gb|EHO63316.1| ribosomal protein S12 methylthiotransferase RimO [Dialister
           succinatiphilus YIT 11850]
          Length = 446

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/364 (31%), Positives = 187/364 (51%), Gaps = 21/364 (5%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           + GCS N  D+E M G +   GY LT++  EA + +INTCT   P++      I K    
Sbjct: 9   SLGCSKNLVDTEMMVGIMEKAGYELTEDLSEAQVIIINTCTFIDPAKEESVETILKAAEY 68

Query: 125 KK-----PLVVAGCVPQGSRDL--KELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHR 176
           KK      LV AGC+ Q  ++   KE+  V + +G      +++ V E+ +  E ++   
Sbjct: 69  KKTGKCEKLVAAGCLTQQYKEALGKEIPEVDVFIGTDSWQHILDAVNESYEKDE-KVYSF 127

Query: 177 KKLPALDLPKVRRN----KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
              P  +   + R     K+   + I  GC   CT+C   + RG + S ++ S+V  VR 
Sbjct: 128 DTNPCANEELIPRQTLTPKYSAYVKIAEGCSNGCTFCYIPYVRGPMHSRSIPSIVHEVRR 187

Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
           + A+G +E  L ++D   YGRD+  G NL  LL  +V     +G   +R+    P +  +
Sbjct: 188 LAAEGTREFNLIAQDLSCYGRDLKNGTNLAALLRELV---KIEGVKWIRLFYLYPTYFDD 244

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
            L ++  +L+   +  ++ +P+Q  SD+VL  M+R  + +  RT++  L    P M I T
Sbjct: 245 ELLDV--ILKEDKICKYVDIPLQHISDSVLQRMHRRDSSASIRTLLHKLRAASPRMTIRT 302

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 409
            ++ GFPGET+EDF +  + I+E +F  +   +F P+ GTPAARM  ++   V + R  E
Sbjct: 303 TLMVGFPGETEEDFKELCDFIREVRFDDMGAFKFSPQDGTPAARMTDQIEEDVKENRYHE 362

Query: 410 LTSV 413
           L ++
Sbjct: 363 LMAI 366


>gi|169830740|ref|YP_001716722.1| RNA modification protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|229890512|sp|B1I241.1|MIAB_DESAP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|169637584|gb|ACA59090.1| RNA modification enzyme, MiaB family [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 443

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/367 (32%), Positives = 186/367 (50%), Gaps = 18/367 (4%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           ++  TFGC  N+ DSE M G L   GY    +  EAD+ LINTC V+  +++ +  L+  
Sbjct: 8   VHTITFGCQMNEFDSELMTGLLEGMGYEPAKSLREADLVLINTCCVRESAENRVWGLLGS 67

Query: 121 CKSAKKP-----LVVAGCVPQ----GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K  K+      + V+GC+PQ        ++    V +V G      +  ++EE   G  
Sbjct: 68  LKRYKRDKPELIVAVSGCLPQQEGTAEEIIRRFPVVDLVLGTHNRHELPGLIEEVRAGRR 127

Query: 171 VRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             L  R+   A+   LP  R++     +P+  GC   CTYC   + RG   S   +++V 
Sbjct: 128 PVLGVRQPDSAVPEGLPVRRKSGLRAWVPVIHGCNNFCTYCVVPYVRGRECSRRPDAVVD 187

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPF 287
            V  + A G +EV L  ++  +YGRD+G    I   A++A L   +G   +R   ++P  
Sbjct: 188 EVCGLAAAGYREVTLLGQNVNSYGRDLGEG--IDFAALLARLDGVEGLWRIRFTTSHPRD 245

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
             + L E+  V R   V   +H+P Q+GS+ VL  MNR YT  D+  +V  +   VP + 
Sbjct: 246 FTDRLIEV--VARAAKVCEHIHLPAQAGSNRVLQRMNRGYTREDYLDLVARIRAAVPDVS 303

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 406
           + TD++ GFPGET+EDF  T++L++   + Q     + PR GTPAA    +VP  V  +R
Sbjct: 304 LTTDLMVGFPGETEEDFADTLDLVRRVGYDQAFTFVYNPRRGTPAAGWPDQVPEDVKSRR 363

Query: 407 SRELTSV 413
            +EL  V
Sbjct: 364 IQELIQV 370


>gi|452990304|emb|CCQ98526.1| enzyme for ms(2)i(6)A formation for tRNA modification [Clostridium
           ultunense Esp]
          Length = 527

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 186/357 (52%), Gaps = 23/357 (6%)

Query: 65  TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
           T+GC  N  DSE MAG L   GY   +  +EAD+ L NTC V+  ++  +   + + K  
Sbjct: 89  TWGCQMNVHDSEVMAGILEEMGYTPAEEEKEADLILFNTCAVRENAEDKVFGELGRLKVL 148

Query: 125 K--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VR 172
           K  KP   L +AGC+ Q     ++ L+    V +V G   I R+  ++ E L G E  + 
Sbjct: 149 KLEKPGLILGLAGCMSQEETVVNKILRSYPHVDLVFGTHNIHRLPILLREALFGKEMVIE 208

Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
           + +++     +LPK RR+     + I  GC   CTYC   + RG   S   E ++  VR 
Sbjct: 209 VWNKEGDIVENLPKQRRDGLKAWVNIMYGCDEFCTYCIVPYTRGKERSRRPEEILAEVRD 268

Query: 233 VIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAI-VAELPPDGSTMLRIGMTNPPFI 288
           +   G +E+ L  ++  AYG+D      N   LL+ I   ++P      +R   ++P   
Sbjct: 269 LARRGYQEITLLGQNVNAYGKDFTDRDYNFADLLSDIHKIDIP-----WVRFTTSHPRDF 323

Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
            + L ++  + +   +   +H+PVQSGS+ +L  MNR+YT  ++  +V  + E +PG+ +
Sbjct: 324 DDRLIDV--LAQGGNLLEHVHLPVQSGSNRILKRMNRKYTREEYLDLVRRMKERIPGLTL 381

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
            TDII GFPGET+EDF +T+ L++E  +       + PR GTPAARM+   S   KK
Sbjct: 382 TTDIIVGFPGETEEDFQETLRLVEEVGYDAAFTFIYSPRAGTPAARMEDNVSEEEKK 438


>gi|425737412|ref|ZP_18855685.1| hypothetical protein C273_03440 [Staphylococcus massiliensis S46]
 gi|425482760|gb|EKU49916.1| hypothetical protein C273_03440 [Staphylococcus massiliensis S46]
          Length = 448

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 190/369 (51%), Gaps = 25/369 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +        Y   D ++ AD+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKDADYERVDFNQNADVFVINTCTVTNTGDKKSRQIIR 62

Query: 120 KC--KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
           +   K+    + V GC  Q  S ++ E+ GV IV G +   R+++ +E   K  E     
Sbjct: 63  RAIRKNPDAVICVTGCYAQTSSAEIMEIPGVDIVVGTEGRSRLLDYIETYRKEREPINGV 122

Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
             ++  +    L++P    ++    L I  GC   CT+C    ARG + S   E +V + 
Sbjct: 123 GNIMKNRTYEELEVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF-- 287
            T++  G KE+ L+   TG YG+D+   NL  LL  +      DG   +RI         
Sbjct: 182 TTLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLET---VDGLERIRISSIEASQLT 238

Query: 288 --ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
             ++E L++  +V+RH      LHVP+QSGSD+VL  M R+Y+++ F   +  L E +PG
Sbjct: 239 DEVIEVLQQSTKVVRH------LHVPLQSGSDSVLKRMRRKYSMAHFSERLTKLHEALPG 292

Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
           + + +D+I GFPGET+E+F QT + I ++ F ++H+  + PR GTPAARM  +V   V  
Sbjct: 293 LAVTSDVIVGFPGETEEEFQQTYDFIVDHHFSELHVFPYSPRIGTPAARMDDQVDEEVKN 352

Query: 405 KRSRELTSV 413
           +R   L ++
Sbjct: 353 ERVHRLINL 361


>gi|407777910|ref|ZP_11125177.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Nitratireductor pacificus pht-3B]
 gi|407300306|gb|EKF19431.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Nitratireductor pacificus pht-3B]
          Length = 470

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 190/379 (50%), Gaps = 38/379 (10%)

Query: 56  PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
           P  + +++KT+GC  N  DS+ M+  L+A GYA T+  E+AD+ L+NTC ++  +   + 
Sbjct: 23  PDGKKVFVKTYGCQMNVYDSQRMSDALAADGYAPTERIEDADLILLNTCHIREKAAEKVY 82

Query: 116 TLIAKCKSAKKP---------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVE 163
           + + + +  K+          + VAGCV Q  G   L+    V +V G Q   R+  VV+
Sbjct: 83  SELGRIRQLKQERGALGRETVVGVAGCVAQAEGQEILRRAPAVDLVIGPQTYHRLPMVVK 142

Query: 164 ETLKGHEV---------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHA 214
               G ++         +  H   LPA     VR       L +  GC   CT+C   + 
Sbjct: 143 RARGGEKIVETDYAIEDKFEH---LPAPQRKVVRARGVTAFLTVQEGCDKFCTFCVVPYT 199

Query: 215 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDT------GAYGRDIGVNLPILLNAIVA 268
           RG   S +V  +V     +   GV+E+ L  ++       GA GR+ G+   +     +A
Sbjct: 200 RGSEVSRSVAQIVAEAEQLAEAGVRELTLLGQNVNAWHGEGADGREWGLGELLFR---LA 256

Query: 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 328
           E+P  G   LR   ++P  + + L  IA     P +  +LH+PVQSGSD +L AMNR++T
Sbjct: 257 EIP--GLDRLRYTTSHPRDMDDAL--IAAHRDLPSLMPYLHLPVQSGSDRILKAMNRKHT 312

Query: 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
             D+R ++D +    P + ++ D I GFPGETD DF  T+ LI++  + Q    ++ PRP
Sbjct: 313 GDDYRRLIDRIRTARPDIAMSGDFIVGFPGETDADFEDTMRLIRDVTYAQAFSFKYSPRP 372

Query: 389 GTPAARMK-KVPSAVVKKR 406
           GTP A M   +P  V  +R
Sbjct: 373 GTPGADMDGHLPEDVKNER 391


>gi|313896795|ref|ZP_07830343.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|320529997|ref|ZP_08031073.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas artemidis
           F0399]
 gi|312974712|gb|EFR40179.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|320137794|gb|EFW29700.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas artemidis
           F0399]
          Length = 436

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/360 (32%), Positives = 186/360 (51%), Gaps = 32/360 (8%)

Query: 66  FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
           +GC  N +D+E M GQL + GY  T+ + +AD+ LINTC V+  ++  +   I + K  K
Sbjct: 11  YGCQMNIADAERMEGQLQSVGYTRTEETADADVILINTCCVRESAEDKVYGKIGEIKKLK 70

Query: 126 KP-----LVVAGCVPQGSRD--LKELEGVSIV----GVQQIDRVVEVVE-------ETLK 167
           +        +AGC+ Q   D  ++    +  V     VQ++ R++  +        +T+ 
Sbjct: 71  ERNPHLIFGIAGCMAQKEGDNLMQRAPHIDFVLGTGKVQELTRIIAEIRAEHSPVVDTVI 130

Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
           G+ +         A +LP  R  KF   +PI  GC   CT+C   + RG   S T E +V
Sbjct: 131 GNTI---------AENLPIARGGKFSAWVPIMYGCNNFCTFCIVPYVRGRERSRTPEDVV 181

Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
             VR  +A+G  EV L  ++  +YG+D        L  +V E+  +G   +R   ++P  
Sbjct: 182 AEVRRAVAEGYTEVTLLGQNVNSYGKDHKAADFADLLRMVDEV--EGIRRVRFMTSHPKD 239

Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
           I + L +     RH C +  +H+PVQ GS+ +L AMNR YT+  +R  V  + E +P   
Sbjct: 240 ISDKLIDTIRNGRHLCEH--IHLPVQYGSNRILKAMNRVYTVESYRERVRRVREALPEAS 297

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           + TD+I GFPGET+EDF  T++ ++E ++   +   +  R GTPAARM+ +VP  V   R
Sbjct: 298 LTTDLIVGFPGETEEDFAATLDFLREIRYDSAYTFLYSKRSGTPAARMEDQVPDDVKHAR 357


>gi|254391805|ref|ZP_05007000.1| methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294815497|ref|ZP_06774140.1| Dimethylallyl adenosine tRNA methylthiotransferase miaB
           [Streptomyces clavuligerus ATCC 27064]
 gi|197705487|gb|EDY51299.1| methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294328096|gb|EFG09739.1| Dimethylallyl adenosine tRNA methylthiotransferase miaB
           [Streptomyces clavuligerus ATCC 27064]
          Length = 506

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 186/369 (50%), Gaps = 16/369 (4%)

Query: 63  MKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           ++T+GC  N  DSE ++G L   GY  A   +  +AD+ + NTC V+  + + +   + +
Sbjct: 18  IRTYGCQMNVHDSERLSGLLEEAGYVRAAEGSDGDADVVVFNTCAVRENADNKLYGNLGR 77

Query: 121 CKSAK--KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
               K  +P   + V GC+ Q  RD  +     V +V G   I ++  ++E      E +
Sbjct: 78  LAPMKTRRPGMQIAVGGCLAQKDRDTIVSRAPWVDVVFGTHNIGKLPVLLERARVQEEAQ 137

Query: 173 LLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
           +   + L A    LP  R + +   + I+VGC   CT+C     RG         ++  +
Sbjct: 138 VEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEI 197

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
             ++A+GV E+ L  ++  AYG DIG +       + A    +G   +R    +P    +
Sbjct: 198 EALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGRIEGLERVRFTSPHPRDFTD 256

Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
            +  IA +   P V   LH+P+QSGSDAVL AM R Y    F  ++D + E +P   I+T
Sbjct: 257 DV--IAAMAETPNVMPQLHMPLQSGSDAVLRAMRRSYRQERFLGIIDKVREAIPHAAIST 314

Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
           DII GFPGET+EDF QT++ ++E +F      Q+  RPGTPAA M+ ++P  VV+ R   
Sbjct: 315 DIIVGFPGETEEDFEQTLHTVREARFANAFTFQYSKRPGTPAATMEGQLPKEVVQARYER 374

Query: 410 LTSVFEAFT 418
           L  + E  +
Sbjct: 375 LVVLQEEIS 383


>gi|423348916|ref|ZP_17326572.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Scardovia
           wiggsiae F0424]
 gi|393703145|gb|EJD65346.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Scardovia
           wiggsiae F0424]
          Length = 489

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 114/378 (30%), Positives = 183/378 (48%), Gaps = 21/378 (5%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD----NSEEADIWLINTCTVKSPSQS 112
           G    Y+ T GC  N  DSE +AG L A GY   D    ++ + D+ ++NTC V+  + +
Sbjct: 33  GKGIYYVHTLGCQMNVHDSERIAGVLEADGYVKADQEQIDNNDVDLIVMNTCAVRENASN 92

Query: 113 AMDTLIAKCKSAKK-----PLVVAGCVPQGSRDLKELEG---VSIVGVQQIDRVVEVVEE 164
            M   + +    K+      + V GC+ Q  R           ++ G + I  +  ++++
Sbjct: 93  RMYGTLGQWAELKREHPQLQIAVGGCMAQKDRQRITQRAPWVDAVFGTKNIGSLTGLLDK 152

Query: 165 T--LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
                  +V +    +     LP  R ++    + I+VGC   CT+C     RG      
Sbjct: 153 ARMYNTSQVEVAADLEYFPSQLPAARVSRISSWVAISVGCNNTCTFCIVPSVRGRERDRR 212

Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRI 280
              ++  ++  +  G KEV L  ++  +YG  +G       LL A       D   + R+
Sbjct: 213 PGDILDEIQRCVDSGAKEVTLLGQNVNSYGYSMGDRYAFSRLLRAC-----GDIKGLERV 267

Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
             T+P         IA +   P V   LH+P+QSGSD +L AM R Y  S F  +VD + 
Sbjct: 268 RFTSPHPAAFTDDVIAAMAETPNVMHQLHMPLQSGSDRILRAMRRSYRTSKFMGIVDRVR 327

Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 400
           E +P  QI TDII GFPGET+EDF QT++++   +F   +  ++ PRPGTPAA M+++P+
Sbjct: 328 EAMPDAQITTDIIVGFPGETEEDFQQTLDILGRARFAGAYTFEYSPRPGTPAALMEQIPA 387

Query: 401 AVVKKRSRELTSVFEAFT 418
            V+++R   L  + E+ T
Sbjct: 388 DVMRERYTRLHDMQESIT 405


>gi|182435525|ref|YP_001823244.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|229891007|sp|B1VXU5.1|MIAB_STRGG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|178464041|dbj|BAG18561.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 506

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/384 (30%), Positives = 194/384 (50%), Gaps = 16/384 (4%)

Query: 48  TGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCT 105
           +G+ S  +   ++  ++T+GC  N  DSE ++G L   GY  A   +  +AD+ + NTC 
Sbjct: 3   SGNRSEAVDVQKSYEVRTYGCQMNVHDSERLSGLLEGAGYVRAPEGSDGDADVVVFNTCA 62

Query: 106 VKSPSQSAMDTLIAKCK--SAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDR 157
           V+  + + +   + +      K+P   + V GC+ Q  RD  +K    V +V G   I +
Sbjct: 63  VRENADNKLYGNLGRLAPMKTKRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGK 122

Query: 158 VVEVVEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 215
           +  ++E      E ++   + L A    LP  R + +   + I+VGC   CT+C     R
Sbjct: 123 LPVLLERARVQEEAQIEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALR 182

Query: 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275
           G         ++  +  ++A+GV E+ L  ++  AYG DIG +       + A    +G 
Sbjct: 183 GKEKDRRTGDILAEIEALVAEGVCEITLLGQNVNAYGSDIG-DREAFSKLLRACGRIEGL 241

Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
             +R    +P    + +  IA +   P V   LH+P+QSGSD VL AM R Y    F  +
Sbjct: 242 ERVRFTSPHPRDFTDDV--IAAMAETPNVMPQLHMPMQSGSDTVLKAMRRSYRQERFLGI 299

Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395
           ++ +   +P   I+TDII GFPGET+EDF QT++ ++E +F      Q+  RPGTPAA M
Sbjct: 300 IEKVRAAMPEAAISTDIIVGFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAADM 359

Query: 396 K-KVPSAVVKKRSRELTSVFEAFT 418
             ++P  VV++R   L+++ E  +
Sbjct: 360 DGQIPKEVVQERYMRLSALQEQIS 383


>gi|295395412|ref|ZP_06805611.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971734|gb|EFG47610.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 488

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 186/370 (50%), Gaps = 24/370 (6%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T  +KT+GC  N  DSE ++G L   GY   + +E+AD+ + NTC V+  + + +   + 
Sbjct: 8   TYEVKTYGCQMNVHDSERLSGLLDDAGYTPAEPNEQADVVVFNTCAVRENADNRLYGNLG 67

Query: 120 KCKSAKK-----PLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
           +    K+      + V GC+ Q  RD  ++    V +V G   +  +  ++E      E 
Sbjct: 68  RLAEVKETHPELQIAVGGCMAQKDRDTIVERAPWVDVVFGTHNMGSLPVLLERARHNKEA 127

Query: 172 RLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
           ++  ++ L      LP  R +     + I+VGC   CT+C   H RG         ++  
Sbjct: 128 QVEIKESLEVFPSTLPTRRESTHSGWVSISVGCNNTCTFCIVPHLRGKEKDRRPGDILAE 187

Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNP-- 285
           V  + A GV EV L  ++  +YG +         LL A+          + R+  T+P  
Sbjct: 188 VEALAAQGVIEVTLLGQNVNSYGTEFRDRQAFGKLLRAV-----GKVQGIERVRFTSPHP 242

Query: 286 -PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
             F  + +  +AE    P V   LH+P+QSGSD VL AM R Y    F  ++D + E +P
Sbjct: 243 AAFSDDVIDAMAET---PTVMPQLHMPLQSGSDTVLKAMRRSYRTKRFMGILDKVRERIP 299

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
              I TDII GFPGET+EDF QT+++++E +F Q +  Q+  RPGTPAA M+ ++P  VV
Sbjct: 300 HASITTDIIVGFPGETEEDFQQTMDVVREARFTQAYTFQYSIRPGTPAAAMENQIPKDVV 359

Query: 404 KKRSRELTSV 413
           ++R   L ++
Sbjct: 360 QERFERLVAL 369


>gi|410456793|ref|ZP_11310649.1| ribosomal protein S12 methylthiotransferase [Bacillus bataviensis
           LMG 21833]
 gi|409927550|gb|EKN64683.1| ribosomal protein S12 methylthiotransferase [Bacillus bataviensis
           LMG 21833]
          Length = 457

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/366 (31%), Positives = 191/366 (52%), Gaps = 18/366 (4%)

Query: 60  TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
           T+   T GC  N  ++E +       GY   D    +D+++INTCTV +        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKQEGYERVDFEAISDVYIINTCTVTNTGDKKSRQVIR 62

Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
           +   K+    + V GC  Q S  ++  + GV +V G Q   ++++ +E+     +     
Sbjct: 63  RAVRKNPDAVICVTGCYAQTSPAEIMAIPGVDVVVGTQDRVKMLDYIEQYKTERQPINGV 122

Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
             ++  +    LD+P    ++    L I  GC   CT+C    ARG + S   + ++ + 
Sbjct: 123 GNIMKNRVYEELDVPSFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIRQA 181

Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
           + ++  G KE+ L+   TG YG D+   NL +LL  + A +   G   LRI       I 
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNLALLLRDLEAGVR--GLERLRISSIEASQIT 239

Query: 290 EHLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
           +   E+ EV++H   V   LH+P+QSGSD+VL  M R+YT+  F   ++ L E++PG+ +
Sbjct: 240 D---EVIEVIKHSNIVVRHLHIPIQSGSDSVLKRMRRKYTMEFFGERLERLKEVLPGLAV 296

Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
            +D+I GFPGET+E+F +T N IK++KF ++H+  +  R GTPAARM+ +V   V  +R 
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKDHKFSELHVFPYSKRTGTPAARMEDQVDEEVKNERV 356

Query: 408 RELTSV 413
             L S+
Sbjct: 357 HRLISL 362


>gi|337749973|ref|YP_004644135.1| MiaB-like tRNA modifying protein YliG [Paenibacillus mucilaginosus
           KNP414]
 gi|386725602|ref|YP_006191928.1| MiaB-like tRNA modifying protein YliG [Paenibacillus mucilaginosus
           K02]
 gi|336301162|gb|AEI44265.1| MiaB-like tRNA modifying enzyme YliG [Paenibacillus mucilaginosus
           KNP414]
 gi|384092727|gb|AFH64163.1| MiaB-like tRNA modifying protein YliG [Paenibacillus mucilaginosus
           K02]
          Length = 442

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 208/390 (53%), Gaps = 27/390 (6%)

Query: 58  TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDT 116
           TE + + T GC  N  DSE M+G +   GY+L    EEA I ++NTC  + +  + +++T
Sbjct: 2   TEKVKVVTLGCEKNLVDSEIMSGLVHERGYSLVSEKEEATIIIVNTCGFIDAAKEESVNT 61

Query: 117 LI----AKCKSAKKPLVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEVVEETLKGH 169
           ++     K  +  K L+V+GC+ Q  ++  LKE+  +  IVG      + ++++E L+G 
Sbjct: 62  ILDMAELKQTANLKALIVSGCLTQRYKEELLKEMPEIDGIVGTGDFHNINQIIDEALQGS 121

Query: 170 EVRLL------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
           +   +      + +KLP     ++   ++   + I  GC  ACT+C     RG   S ++
Sbjct: 122 KPVYVGNPVFNYEQKLPR----RLTTPRYTAYVKIAEGCDNACTFCSIPIMRGKFRSRSM 177

Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG 281
           ES++  V+ + A GVKE+ L ++D+  YG D+  G  LP L+N  V+E+P  G   +R+ 
Sbjct: 178 ESVLEEVQQLAAQGVKEISLIAQDSTNYGTDLYDGFKLPELMNR-VSEVP--GIEWVRLH 234

Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
              P F  + L ++  +  +P +  ++ +P+Q  SD++L  M R     D R ++  + E
Sbjct: 235 YAYPGFFTDELIDV--IADNPKICKYIDMPLQHSSDSILKRMRRPGRQRDARELIKKIRE 292

Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPS 400
            +PG+ + T +I GFPGET+EDF    + I++ +F ++ +  +     TPA+R+  +VP 
Sbjct: 293 RIPGVSLRTSLIVGFPGETEEDFENLKSFIQDVQFDRLGVFTYSKEEDTPASRLPDQVPD 352

Query: 401 AVVKKRSRELTSVFEAFTPYLGMEGRVERI 430
            V + R+  L  +    +   G  GR+ ++
Sbjct: 353 EVKEYRANVLMEIQREISSSRG-SGRIGQV 381


>gi|444306960|ref|ZP_21142712.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Arthrobacter
           sp. SJCon]
 gi|443480737|gb|ELT43680.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Arthrobacter
           sp. SJCon]
          Length = 517

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 121/377 (32%), Positives = 196/377 (51%), Gaps = 31/377 (8%)

Query: 56  PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
           P   T  ++TFGC  N  DSE MAG L   GY   D  E+AD+ + NTC V+  + + + 
Sbjct: 25  PRPRTYQVRTFGCQMNVHDSERMAGMLEDAGYVAADG-EQADVVVFNTCAVRENADNKLY 83

Query: 116 T---LIAKCKSAKKPLVVA--GCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLK 167
               ++A  K+A   + +A  GC+ Q  R+  LK+   V ++ G   +  +  +++    
Sbjct: 84  GNLGILAPVKAANPGMQIAVGGCLAQKDRETILKKAPWVDAVFGTHNVGALPALLDRARH 143

Query: 168 GHEVRLLHRKKLPALD-----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
            +E +L   + L +LD     LP  R + +   + I+VGC   CT+C     RG      
Sbjct: 144 NNEAQL---EILESLDVFPSTLPTKRDSVYSGWVSISVGCNNTCTFCIVPALRGKEKDRR 200

Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRI 280
              ++  ++ ++ DG  EV L  ++  +YG + G       LL A       D   + R+
Sbjct: 201 PGDILAEIQALVDDGAIEVTLLGQNVNSYGVEFGDRQAFSKLLRAC-----GDIEGLERV 255

Query: 281 GMTNP---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
             T+P    F  + +  +AE    P V   LH+P+QSGSD++L AM R Y  + F  ++D
Sbjct: 256 RFTSPHPAAFTDDVIDAMAET---PNVMPQLHMPLQSGSDSILRAMKRSYRSTKFLGILD 312

Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-K 396
            + E +P   I+TDII GFPGET+EDF  T++++++ +F      Q+  RPGTPAA +  
Sbjct: 313 KVREKIPHAAISTDIIVGFPGETEEDFQATLDVVEQSRFATAFTFQYSKRPGTPAADLPD 372

Query: 397 KVPSAVVKKRSRELTSV 413
           ++P AVV++R   LT++
Sbjct: 373 QLPKAVVQERFERLTAL 389


>gi|334137185|ref|ZP_08510629.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. HGF7]
 gi|333605269|gb|EGL16639.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. HGF7]
          Length = 494

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 121/372 (32%), Positives = 192/372 (51%), Gaps = 20/372 (5%)

Query: 62  YM-KTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           YM +T+GC  N+ D+E M G L   GY  T+  +EAD+ L+NTC ++  ++  +   +  
Sbjct: 53  YMIRTYGCQMNEHDTETMKGMLEELGYTSTEEKQEADVILLNTCAIRENAEDKVFGELGH 112

Query: 121 CKSAK--KP---LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
            K  K  KP   L V GC+ Q      R L++   V ++ G   I R+  ++++     E
Sbjct: 113 LKHLKLEKPNLVLGVCGCMSQEEGVVKRILQKHGHVDLIFGTHNIHRLPALLQDAYLSKE 172

Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
             V +  ++     +LPK +R      + I  GC   CTYC   + RG   S   E ++ 
Sbjct: 173 MVVEVWSKEGDIIENLPK-KREGMRAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVLA 231

Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
            VR +   G KE+ L  ++  AYG+D   ++      ++A++       +R   ++P   
Sbjct: 232 EVRDLARQGFKEITLLGQNVNAYGKDFE-DISYSFGDLMADMRKIDVPRIRFTTSHPRDF 290

Query: 289 LEHLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
            +HL    EVL H   +   +H+PVQSGS  VL  M+R+Y+   +  +V  +   +P + 
Sbjct: 291 DDHL---VEVLAHKGNLMEHIHLPVQSGSTEVLKRMSRKYSRELYLDLVRKIKTAIPDVV 347

Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
           ++TDII GFPGETDE F +T++L+KE +F   +   + PR GTPAA M+  VP  V K+R
Sbjct: 348 LSTDIIVGFPGETDEQFEETLSLVKEVRFDFAYSFIYSPREGTPAAAMEDNVPEDVKKER 407

Query: 407 SRELTSVFEAFT 418
              L  V  AF+
Sbjct: 408 LYRLNEVLGAFS 419


>gi|323356750|ref|YP_004223146.1| 2-methylthioadenine synthetase [Microbacterium testaceum StLB037]
 gi|323273121|dbj|BAJ73266.1| 2-methylthioadenine synthetase [Microbacterium testaceum StLB037]
          Length = 515

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 182/370 (49%), Gaps = 18/370 (4%)

Query: 57  GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
           G  T  ++TFGC  N  DSE ++G L + GY   D   EAD+ +INTC V+  +   +  
Sbjct: 22  GPRTYEVRTFGCQMNVHDSERLSGSLESAGYVRADAGAEADVIVINTCAVRDNAAGKLYG 81

Query: 117 LIAKCKSAKKP-----LVVAGCVPQGSRDLKELEG--VSIV-GVQQIDRVVEVVEETLKG 168
            +   KS K       + V GC+ Q  +D  + +   V +V G   +  +  ++E     
Sbjct: 82  TLGHLKSRKDAHAGMQIAVGGCLAQMDKDAVQQKAPWVDVVFGTHNMGSLPGMLERARHN 141

Query: 169 HEVRL--LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
            E  L  L   ++    LP  R +     + I+VGC   CT+C     RG         +
Sbjct: 142 GEAELEILESLEIFPSTLPTKRDSVHSGWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDI 201

Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTN 284
           +  +R ++ DG  EV L  ++  +YG + G  L    LL A   E+  +G   +R    +
Sbjct: 202 LNEIRLLVDDGAIEVTLLGQNVNSYGVEFGDRLAFGKLLRA-AGEI--EGLERIRFTSPH 258

Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
           P    + +  IA +   P V   LH+P+QSGSD +L AM R Y    F  ++D + E +P
Sbjct: 259 PAAFTDDV--IAAMAETPAVMPQLHMPLQSGSDRILKAMRRSYRSEKFLGILDRVRERIP 316

Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVV 403
              I TDII GFPGET+EDF +T+ +++  +F      Q+  R GTPAA M  +VP AVV
Sbjct: 317 HAAITTDIIVGFPGETEEDFQETLRVVEAARFSSAFTFQYSIREGTPAATMADQVPKAVV 376

Query: 404 KKRSRELTSV 413
           ++R   L ++
Sbjct: 377 QERYERLIAL 386


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.318    0.137    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,379,295,659
Number of Sequences: 23463169
Number of extensions: 317061174
Number of successful extensions: 784945
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8199
Number of HSP's successfully gapped in prelim test: 787
Number of HSP's that attempted gapping in prelim test: 757823
Number of HSP's gapped (non-prelim): 9755
length of query: 448
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 302
effective length of database: 8,933,572,693
effective search space: 2697938953286
effective search space used: 2697938953286
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)