Query 013195
Match_columns 448
No_of_seqs 466 out of 2498
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 01:22:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4355 Predicted Fe-S oxidore 100.0 2.7E-96 6E-101 699.3 35.3 441 1-448 1-441 (547)
2 COG0621 MiaB 2-methylthioadeni 100.0 7.3E-91 1.6E-95 699.5 42.7 385 58-448 2-401 (437)
3 PRK14340 (dimethylallyl)adenos 100.0 9.5E-80 2.1E-84 634.0 44.9 387 57-448 5-406 (445)
4 PRK14332 (dimethylallyl)adenos 100.0 3.8E-79 8.2E-84 629.7 45.1 385 58-448 10-409 (449)
5 PRK14327 (dimethylallyl)adenos 100.0 5.8E-79 1.3E-83 632.7 46.0 387 55-448 63-469 (509)
6 PRK14335 (dimethylallyl)adenos 100.0 5.4E-78 1.2E-82 623.6 44.6 387 60-448 2-415 (455)
7 PRK14329 (dimethylallyl)adenos 100.0 1.3E-77 2.7E-82 622.3 45.4 388 55-448 20-431 (467)
8 PRK14330 (dimethylallyl)adenos 100.0 2.2E-77 4.8E-82 617.2 45.5 381 60-447 2-395 (434)
9 PRK14333 (dimethylallyl)adenos 100.0 1.3E-76 2.7E-81 613.2 45.5 384 58-448 6-412 (448)
10 PRK14326 (dimethylallyl)adenos 100.0 1.2E-76 2.6E-81 618.3 45.6 389 53-447 8-416 (502)
11 PRK14337 (dimethylallyl)adenos 100.0 2.3E-76 5E-81 610.5 45.7 383 59-447 4-408 (446)
12 PRK14331 (dimethylallyl)adenos 100.0 2.5E-76 5.3E-81 609.6 44.9 383 60-448 2-400 (437)
13 TIGR01578 MiaB-like-B MiaB-lik 100.0 6.3E-76 1.4E-80 603.3 44.6 381 60-446 1-385 (420)
14 PRK14325 (dimethylallyl)adenos 100.0 1.4E-75 3.1E-80 605.7 45.6 386 58-448 3-405 (444)
15 PRK14336 (dimethylallyl)adenos 100.0 3.2E-75 7E-80 596.9 43.6 364 58-447 1-378 (418)
16 TIGR01574 miaB-methiolase tRNA 100.0 9.4E-75 2E-79 598.0 44.5 384 60-448 1-404 (438)
17 PRK14328 (dimethylallyl)adenos 100.0 9.8E-75 2.1E-79 598.0 44.1 384 59-447 2-403 (439)
18 TIGR01579 MiaB-like-C MiaB-lik 100.0 9.4E-75 2E-79 595.2 42.8 378 63-448 1-392 (414)
19 TIGR00089 RNA modification enz 100.0 1.3E-74 2.9E-79 596.6 43.4 381 60-447 1-395 (429)
20 PRK14862 rimO ribosomal protei 100.0 2E-74 4.3E-79 594.6 43.2 377 57-448 6-400 (440)
21 TIGR01125 MiaB-like tRNA modif 100.0 4.4E-74 9.6E-79 592.3 45.1 381 60-447 1-391 (430)
22 PRK14338 (dimethylallyl)adenos 100.0 2.2E-73 4.7E-78 589.9 44.8 384 50-448 12-413 (459)
23 PRK14339 (dimethylallyl)adenos 100.0 4.9E-73 1.1E-77 581.1 43.3 369 70-447 1-384 (420)
24 PRK14334 (dimethylallyl)adenos 100.0 9.1E-73 2E-77 583.2 44.2 380 60-448 2-393 (440)
25 KOG2492 CDK5 activator-binding 100.0 5.2E-59 1.1E-63 447.2 28.9 386 56-447 70-500 (552)
26 TIGR02026 BchE magnesium-proto 100.0 5.8E-38 1.3E-42 328.9 31.2 309 71-394 21-385 (497)
27 TIGR03471 HpnJ hopanoid biosyn 100.0 5.3E-37 1.2E-41 320.5 28.4 280 94-394 67-385 (472)
28 PRK00955 hypothetical protein; 100.0 1.1E-35 2.5E-40 310.3 30.0 200 192-396 292-528 (620)
29 PRK01254 hypothetical protein; 100.0 3.5E-34 7.6E-39 296.5 25.3 199 193-394 373-608 (707)
30 PRK05481 lipoyl synthase; Prov 100.0 1.4E-31 3E-36 261.3 23.2 211 190-418 51-263 (289)
31 COG1032 Fe-S oxidoreductase [E 100.0 1.4E-27 2.9E-32 250.4 28.0 326 71-406 30-415 (490)
32 PRK07094 biotin synthase; Prov 100.0 1.2E-26 2.6E-31 231.2 23.8 208 192-415 39-248 (323)
33 PF00919 UPF0004: Uncharacteri 99.9 2.9E-27 6.3E-32 192.8 10.3 92 60-151 1-98 (98)
34 PRK05904 coproporphyrinogen II 99.9 3.2E-26 6.9E-31 229.8 18.8 209 195-416 10-225 (353)
35 TIGR00510 lipA lipoate synthas 99.9 5.6E-25 1.2E-29 214.6 22.4 196 189-396 60-258 (302)
36 PRK12928 lipoyl synthase; Prov 99.9 6.9E-25 1.5E-29 213.6 21.8 193 190-394 58-253 (290)
37 PRK08599 coproporphyrinogen II 99.9 7.4E-25 1.6E-29 222.8 20.9 212 193-415 3-226 (377)
38 PRK05628 coproporphyrinogen II 99.9 2.9E-24 6.3E-29 218.2 23.2 210 195-415 6-234 (375)
39 PRK09058 coproporphyrinogen II 99.9 4.9E-24 1.1E-28 220.8 21.9 214 191-415 61-290 (449)
40 TIGR01212 radical SAM protein, 99.9 9.2E-24 2E-28 207.9 20.3 192 194-395 20-226 (302)
41 PRK05799 coproporphyrinogen II 99.9 1E-23 2.2E-28 214.4 21.2 210 194-415 6-225 (374)
42 PRK08446 coproporphyrinogen II 99.9 6.4E-24 1.4E-28 213.5 18.9 183 202-396 10-199 (350)
43 PRK07379 coproporphyrinogen II 99.9 1.4E-23 3.1E-28 214.4 21.3 211 194-415 13-241 (400)
44 COG1031 Uncharacterized Fe-S o 99.9 1.3E-22 2.8E-27 199.5 26.9 295 93-395 60-414 (560)
45 PRK08207 coproporphyrinogen II 99.9 3.5E-23 7.7E-28 215.1 23.4 215 191-415 163-393 (488)
46 PRK09057 coproporphyrinogen II 99.9 6.4E-23 1.4E-27 208.5 21.1 210 195-415 8-229 (380)
47 TIGR00539 hemN_rel putative ox 99.9 5.2E-23 1.1E-27 207.9 20.2 210 195-415 4-222 (360)
48 PRK08898 coproporphyrinogen II 99.9 4.8E-23 1E-27 210.2 20.0 212 193-415 21-243 (394)
49 PRK06256 biotin synthase; Vali 99.9 6.2E-23 1.3E-27 205.7 20.1 198 199-412 65-266 (336)
50 PRK08208 coproporphyrinogen II 99.9 1E-22 2.2E-27 210.1 22.1 214 191-415 39-261 (430)
51 TIGR01210 conserved hypothetic 99.9 7.1E-23 1.5E-27 202.3 18.4 191 192-395 15-221 (313)
52 PRK06582 coproporphyrinogen II 99.9 2.8E-22 6E-27 203.9 20.7 204 202-415 21-236 (390)
53 PRK05660 HemN family oxidoredu 99.9 1.1E-21 2.3E-26 199.3 23.4 212 193-415 8-229 (378)
54 PRK06294 coproporphyrinogen II 99.9 4E-22 8.6E-27 201.9 18.8 207 194-415 9-229 (370)
55 TIGR00433 bioB biotin syntheta 99.9 2.7E-21 5.9E-26 190.4 24.0 206 193-414 29-239 (296)
56 PRK06245 cofG FO synthase subu 99.9 1.4E-21 3E-26 195.8 19.3 203 193-407 13-232 (336)
57 PLN02428 lipoic acid synthase 99.9 6.6E-21 1.4E-25 188.2 22.7 182 192-385 102-285 (349)
58 PRK08629 coproporphyrinogen II 99.9 4.5E-21 9.8E-26 197.3 21.7 189 191-393 52-245 (433)
59 smart00729 Elp3 Elongator prot 99.9 2.5E-21 5.3E-26 179.6 17.9 194 193-396 2-201 (216)
60 TIGR00538 hemN oxygen-independ 99.9 1.6E-20 3.5E-25 195.3 23.8 212 193-415 51-276 (455)
61 PRK13347 coproporphyrinogen II 99.9 2.3E-20 5.1E-25 193.8 23.3 213 192-415 51-277 (453)
62 PRK09249 coproporphyrinogen II 99.9 3.2E-20 7E-25 192.9 22.8 210 195-415 53-276 (453)
63 TIGR00423 radical SAM domain p 99.9 1.8E-20 3.9E-25 185.5 18.3 201 194-406 7-225 (309)
64 TIGR03550 F420_cofG 7,8-dideme 99.8 3.1E-20 6.6E-25 184.7 18.3 198 193-405 5-226 (322)
65 PRK06267 hypothetical protein; 99.8 1.5E-19 3.3E-24 181.4 21.0 194 193-408 28-228 (350)
66 COG0635 HemN Coproporphyrinoge 99.8 1.4E-19 3E-24 184.9 20.3 205 202-416 44-263 (416)
67 TIGR03551 F420_cofH 7,8-dideme 99.8 1.8E-19 3.9E-24 180.8 19.1 189 195-395 42-245 (343)
68 COG1242 Predicted Fe-S oxidore 99.8 3.2E-19 6.9E-24 166.2 19.2 191 195-395 27-231 (312)
69 TIGR01211 ELP3 histone acetylt 99.8 3E-19 6.5E-24 186.0 20.7 186 200-395 76-308 (522)
70 TIGR03700 mena_SCO4494 putativ 99.8 5E-19 1.1E-23 178.0 17.9 199 195-406 51-267 (351)
71 TIGR03699 mena_SCO4550 menaqui 99.8 4.9E-19 1.1E-23 177.7 17.7 199 195-405 44-257 (340)
72 PRK08445 hypothetical protein; 99.8 6.6E-19 1.4E-23 176.3 18.1 191 195-395 45-248 (348)
73 PRK08508 biotin synthase; Prov 99.8 3.8E-18 8.2E-23 166.3 20.6 188 198-402 13-205 (279)
74 cd01335 Radical_SAM Radical SA 99.8 2.7E-18 5.8E-23 157.2 18.1 185 196-395 1-189 (204)
75 PLN02389 biotin synthase 99.8 7.3E-18 1.6E-22 170.0 22.2 202 193-410 83-292 (379)
76 PF04055 Radical_SAM: Radical 99.8 3.9E-18 8.4E-23 151.6 13.8 162 196-371 1-166 (166)
77 PRK09240 thiH thiamine biosynt 99.7 1.2E-16 2.6E-21 161.7 19.4 201 193-411 75-286 (371)
78 PRK15108 biotin synthase; Prov 99.7 5.2E-16 1.1E-20 155.4 21.7 199 193-408 43-248 (345)
79 COG0502 BioB Biotin synthase a 99.7 7.2E-16 1.6E-20 150.5 19.5 197 193-406 51-253 (335)
80 TIGR02351 thiH thiazole biosyn 99.7 1.8E-15 3.9E-20 153.0 18.8 204 193-414 74-288 (366)
81 PRK07360 FO synthase subunit 2 99.7 2.3E-15 5.1E-20 152.5 17.2 188 195-396 63-268 (371)
82 PRK08444 hypothetical protein; 99.7 3.3E-15 7.2E-20 149.6 17.9 197 195-403 52-263 (353)
83 COG1243 ELP3 Histone acetyltra 99.7 5E-15 1.1E-19 146.9 18.3 214 193-413 68-324 (515)
84 PRK05926 hypothetical protein; 99.6 1.6E-14 3.5E-19 145.5 20.1 186 196-394 72-272 (370)
85 PRK00164 moaA molybdenum cofac 99.6 1E-13 2.2E-18 138.7 23.5 198 193-408 18-220 (331)
86 PRK09613 thiH thiamine biosynt 99.6 4.5E-14 9.7E-19 145.7 20.7 201 193-406 85-300 (469)
87 PRK05927 hypothetical protein; 99.6 1.9E-14 4.1E-19 144.1 15.6 195 195-403 48-261 (350)
88 PRK13361 molybdenum cofactor b 99.6 3.1E-13 6.7E-18 135.1 22.4 200 193-410 15-218 (329)
89 TIGR02666 moaA molybdenum cofa 99.5 1E-12 2.2E-17 131.7 22.9 197 193-407 11-214 (334)
90 PTZ00413 lipoate synthase; Pro 99.5 9.6E-13 2.1E-17 129.8 20.9 184 192-387 149-336 (398)
91 PRK09234 fbiC FO synthase; Rev 99.5 3.4E-13 7.3E-18 148.1 19.7 187 195-393 529-730 (843)
92 TIGR02668 moaA_archaeal probab 99.5 1.4E-12 3.1E-17 128.8 22.3 198 193-409 11-211 (302)
93 TIGR03822 AblA_like_2 lysine-2 99.5 1.8E-12 3.9E-17 128.8 21.7 185 189-394 85-277 (321)
94 PLN02951 Molybderin biosynthes 99.5 6.7E-12 1.5E-16 127.2 22.6 199 193-409 59-261 (373)
95 PRK09234 fbiC FO synthase; Rev 99.5 2.1E-12 4.6E-17 141.9 18.6 197 194-405 73-295 (843)
96 PRK14463 ribosomal RNA large s 99.4 2E-10 4.3E-15 115.1 25.4 184 190-390 101-293 (349)
97 TIGR02493 PFLA pyruvate format 99.4 3.9E-11 8.5E-16 114.2 19.4 177 194-391 17-203 (235)
98 PRK14455 ribosomal RNA large s 99.4 1.8E-10 4E-15 115.7 23.3 189 190-392 107-307 (356)
99 PRK14466 ribosomal RNA large s 99.3 3.8E-10 8.2E-15 112.0 23.9 183 191-390 102-293 (345)
100 PRK05301 pyrroloquinoline quin 99.3 6.1E-10 1.3E-14 113.6 24.7 178 190-386 14-193 (378)
101 TIGR02109 PQQ_syn_pqqE coenzym 99.3 9.1E-10 2E-14 111.5 23.7 175 191-384 6-182 (358)
102 COG1060 ThiH Thiamine biosynth 99.3 1.3E-10 2.7E-15 116.8 16.8 192 194-396 61-268 (370)
103 TIGR01290 nifB nitrogenase cof 99.2 1.5E-09 3.2E-14 112.2 23.4 186 192-393 24-236 (442)
104 COG0320 LipA Lipoate synthase 99.2 4.1E-10 8.8E-15 105.5 16.8 182 190-385 68-251 (306)
105 PRK14456 ribosomal RNA large s 99.2 1.6E-09 3.4E-14 109.1 21.8 189 190-392 119-323 (368)
106 TIGR00238 KamA family protein. 99.2 8.9E-10 1.9E-14 110.0 19.3 189 189-402 110-305 (331)
107 COG1244 Predicted Fe-S oxidore 99.2 7.9E-10 1.7E-14 105.9 17.1 191 193-394 48-255 (358)
108 COG2896 MoaA Molybdenum cofact 99.2 2E-09 4.3E-14 105.2 20.3 197 194-409 13-214 (322)
109 COG1856 Uncharacterized homolo 99.2 1.2E-09 2.6E-14 99.3 16.9 203 197-415 16-219 (275)
110 TIGR02495 NrdG2 anaerobic ribo 99.2 2.7E-09 5.9E-14 98.2 19.9 164 191-375 15-183 (191)
111 PRK11145 pflA pyruvate formate 99.2 2.1E-09 4.4E-14 103.1 19.0 178 193-391 21-209 (246)
112 PRK14470 ribosomal RNA large s 99.2 8.1E-09 1.8E-13 102.9 23.8 185 190-389 95-288 (336)
113 PRK14467 ribosomal RNA large s 99.2 5.3E-09 1.1E-13 104.6 22.3 191 190-392 97-299 (348)
114 PRK14457 ribosomal RNA large s 99.2 8.3E-09 1.8E-13 103.1 23.2 192 190-392 99-300 (345)
115 PRK14459 ribosomal RNA large s 99.1 7.1E-09 1.5E-13 104.1 22.2 189 190-392 119-329 (373)
116 PRK14453 chloramphenicol/florf 99.1 5.6E-09 1.2E-13 104.5 21.4 184 192-390 100-296 (347)
117 TIGR03470 HpnH hopanoid biosyn 99.1 7.5E-09 1.6E-13 103.0 22.2 200 191-414 27-229 (318)
118 PRK11194 ribosomal RNA large s 99.1 1.2E-08 2.5E-13 102.9 23.4 187 190-392 101-307 (372)
119 PRK14460 ribosomal RNA large s 99.1 1.3E-08 2.9E-13 102.2 23.8 186 191-392 101-302 (354)
120 PRK14461 ribosomal RNA large s 99.1 1.5E-08 3.3E-13 100.8 22.8 188 191-393 106-323 (371)
121 PRK14468 ribosomal RNA large s 99.1 3.4E-08 7.3E-13 98.9 24.4 184 191-390 92-289 (343)
122 TIGR00048 radical SAM enzyme, 99.1 2.3E-08 4.9E-13 100.6 23.1 189 190-392 103-303 (355)
123 PRK14469 ribosomal RNA large s 99.1 1.2E-08 2.6E-13 102.5 20.4 185 191-389 100-293 (343)
124 PRK14464 ribosomal RNA large s 99.1 1.8E-08 3.9E-13 100.2 20.9 185 192-393 96-288 (344)
125 PRK14465 ribosomal RNA large s 99.1 4.4E-08 9.4E-13 97.6 22.7 179 191-386 104-294 (342)
126 PRK14462 ribosomal RNA large s 99.0 7.9E-08 1.7E-12 96.2 23.4 187 191-392 109-308 (356)
127 COG2516 Biotin synthase-relate 99.0 1.3E-08 2.9E-13 97.5 16.2 229 190-435 27-274 (339)
128 PRK14454 ribosomal RNA large s 99.0 9.4E-08 2E-12 95.7 21.5 187 190-391 99-295 (342)
129 TIGR03821 AblA_like_1 lysine-2 99.0 5.8E-08 1.3E-12 96.5 19.8 184 193-402 97-288 (321)
130 KOG2672 Lipoate synthase [Coen 98.9 1.3E-08 2.7E-13 95.4 12.3 180 195-387 114-296 (360)
131 PRK13762 tRNA-modifying enzyme 98.9 1.2E-07 2.5E-12 94.4 20.2 171 198-391 64-266 (322)
132 COG2100 Predicted Fe-S oxidore 98.9 1.8E-07 3.9E-12 89.7 20.1 200 195-411 110-325 (414)
133 COG0820 Predicted Fe-S-cluster 98.9 2.7E-07 5.9E-12 90.8 20.9 187 189-391 98-299 (349)
134 TIGR03820 lys_2_3_AblA lysine- 98.9 2.7E-07 5.8E-12 93.9 20.9 184 189-395 105-296 (417)
135 COG0731 Fe-S oxidoreductases [ 98.9 2.5E-07 5.5E-12 89.4 19.2 176 201-396 33-223 (296)
136 KOG2900 Biotin synthase [Coenz 98.8 2.6E-08 5.7E-13 92.0 9.9 189 199-402 91-287 (380)
137 COG4277 Predicted DNA-binding 98.7 7E-07 1.5E-11 84.8 14.9 187 198-395 60-266 (404)
138 TIGR03278 methan_mark_10 putat 98.5 8.7E-06 1.9E-10 83.1 20.1 165 205-387 38-208 (404)
139 COG0535 Predicted Fe-S oxidore 98.5 3.3E-05 7.2E-10 77.3 23.8 182 190-389 17-200 (347)
140 COG1533 SplB DNA repair photol 98.5 6.3E-06 1.4E-10 80.8 17.6 188 194-389 31-226 (297)
141 PRK13745 anaerobic sulfatase-m 98.4 2.4E-05 5.3E-10 80.7 20.7 181 191-387 12-206 (412)
142 TIGR02494 PFLE_PFLC glycyl-rad 98.4 1.8E-05 3.8E-10 78.0 16.6 152 220-392 105-264 (295)
143 TIGR03365 Bsubt_queE 7-cyano-7 98.3 7.5E-05 1.6E-09 71.2 18.5 147 194-375 25-176 (238)
144 PRK13758 anaerobic sulfatase-m 98.3 0.00013 2.7E-09 74.3 21.4 173 196-383 9-193 (370)
145 COG1509 KamA Lysine 2,3-aminom 98.2 8.7E-05 1.9E-09 73.0 18.1 185 189-395 108-300 (369)
146 COG0641 AslB Arylsulfatase reg 98.2 7.7E-05 1.7E-09 75.6 18.2 198 202-415 18-224 (378)
147 COG1180 PflA Pyruvate-formate 98.2 0.00012 2.6E-09 70.7 17.7 173 192-384 35-213 (260)
148 cd02068 radical_SAM_B12_BD B12 98.0 3.4E-05 7.5E-10 66.1 9.2 72 94-169 38-114 (127)
149 KOG2535 RNA polymerase II elon 98.0 0.00011 2.3E-09 71.4 12.6 169 219-395 148-338 (554)
150 COG1625 Fe-S oxidoreductase, r 98.0 0.00025 5.5E-09 71.1 15.3 172 206-393 44-222 (414)
151 COG1313 PflX Uncharacterized F 97.7 0.0016 3.4E-08 62.3 14.5 177 200-397 126-307 (335)
152 PF02310 B12-binding: B12 bind 97.6 0.00033 7.1E-09 59.1 8.7 99 61-162 3-121 (121)
153 TIGR00640 acid_CoA_mut_C methy 97.4 0.0026 5.6E-08 54.9 11.2 101 59-163 3-121 (132)
154 TIGR03279 cyano_FeS_chp putati 97.3 0.0061 1.3E-07 62.3 15.1 108 305-415 139-254 (433)
155 PRK10076 pyruvate formate lyas 97.3 0.013 2.8E-07 54.9 16.0 153 219-389 17-172 (213)
156 COG0602 NrdG Organic radical a 97.2 0.00063 1.4E-08 63.6 5.4 63 200-268 30-97 (212)
157 TIGR02826 RNR_activ_nrdG3 anae 97.0 0.0015 3.3E-08 57.5 6.1 69 193-268 16-86 (147)
158 PF13353 Fer4_12: 4Fe-4S singl 97.0 0.0019 4.2E-08 55.8 6.3 72 196-270 9-83 (139)
159 COG5014 Predicted Fe-S oxidore 96.9 0.04 8.6E-07 48.9 14.0 140 199-357 48-197 (228)
160 cd02067 B12-binding B12 bindin 96.7 0.0074 1.6E-07 50.9 8.1 78 75-154 16-111 (119)
161 cd02065 B12-binding_like B12 b 96.7 0.0034 7.5E-08 53.0 6.0 81 76-162 17-115 (125)
162 PRK02261 methylaspartate mutas 96.7 0.037 7.9E-07 48.1 12.2 105 59-165 4-133 (137)
163 PF13394 Fer4_14: 4Fe-4S singl 96.6 0.0061 1.3E-07 51.2 6.5 53 198-250 4-60 (119)
164 COG2108 Uncharacterized conser 96.4 0.035 7.5E-07 54.2 11.0 163 194-384 30-201 (353)
165 cd02072 Glm_B12_BD B12 binding 96.4 0.024 5.1E-07 48.5 8.7 85 76-164 17-125 (128)
166 COG2185 Sbm Methylmalonyl-CoA 96.1 0.076 1.6E-06 46.1 10.3 95 58-154 12-124 (143)
167 cd03174 DRE_TIM_metallolyase D 96.0 0.42 9.1E-06 45.9 16.8 150 218-382 13-166 (265)
168 TIGR01501 MthylAspMutase methy 96.0 0.16 3.5E-06 43.9 12.1 88 75-164 18-130 (134)
169 cd02071 MM_CoA_mut_B12_BD meth 95.6 0.2 4.4E-06 42.4 11.0 77 76-154 17-111 (122)
170 TIGR02491 NrdG anaerobic ribon 95.4 0.055 1.2E-06 48.0 7.3 67 199-269 22-93 (154)
171 PRK11121 nrdG anaerobic ribonu 95.0 0.15 3.2E-06 45.2 8.7 66 200-270 24-96 (154)
172 PRK09426 methylmalonyl-CoA mut 94.4 0.38 8.2E-06 53.1 11.9 102 58-163 582-701 (714)
173 PLN02746 hydroxymethylglutaryl 94.2 2.1 4.5E-05 43.1 15.7 145 218-381 62-216 (347)
174 KOG2876 Molybdenum cofactor bi 93.8 0.18 3.9E-06 47.9 6.7 184 196-400 15-205 (323)
175 KOG2492 CDK5 activator-binding 93.8 0.038 8.2E-07 55.3 2.4 51 50-109 386-437 (552)
176 cd02070 corrinoid_protein_B12- 93.3 0.27 5.8E-06 45.6 7.0 73 74-150 98-189 (201)
177 PRK14818 NADH dehydrogenase su 92.8 0.37 7.9E-06 43.1 6.8 76 59-137 31-111 (173)
178 PRK05692 hydroxymethylglutaryl 92.7 5.2 0.00011 39.3 15.4 147 218-381 20-174 (287)
179 PRK14816 NADH dehydrogenase su 92.5 0.34 7.4E-06 43.7 6.3 74 60-138 42-123 (182)
180 cd07948 DRE_TIM_HCS Saccharomy 92.5 7.7 0.00017 37.5 16.1 142 218-381 16-160 (262)
181 cd07938 DRE_TIM_HMGL 3-hydroxy 92.4 6.1 0.00013 38.4 15.5 147 218-381 14-168 (274)
182 TIGR01957 nuoB_fam NADH-quinon 91.8 0.46 9.9E-06 41.5 6.0 73 60-137 18-98 (145)
183 TIGR02370 pyl_corrinoid methyl 91.4 1.3 2.8E-05 40.9 9.0 86 59-148 85-189 (197)
184 cd07939 DRE_TIM_NifV Streptomy 91.3 7.9 0.00017 37.2 14.8 141 219-381 15-158 (259)
185 PRK14813 NADH dehydrogenase su 90.8 0.2 4.3E-06 45.4 2.9 73 61-136 30-107 (189)
186 PRK11858 aksA trans-homoaconit 89.6 13 0.00028 37.9 15.4 142 219-381 21-164 (378)
187 PF01938 TRAM: TRAM domain; I 89.6 0.52 1.1E-05 34.5 3.8 26 421-447 1-26 (61)
188 PF04016 DUF364: Domain of unk 89.4 0.6 1.3E-05 41.0 4.7 55 94-152 61-116 (147)
189 cd02069 methionine_synthase_B1 89.2 1.1 2.3E-05 42.0 6.6 74 59-134 89-178 (213)
190 PRK06411 NADH dehydrogenase su 88.9 0.9 1.9E-05 41.2 5.5 64 73-137 47-115 (183)
191 PRK14819 NADH dehydrogenase su 88.5 1.2 2.7E-05 42.2 6.3 76 59-137 31-112 (264)
192 cd07944 DRE_TIM_HOA_like 4-hyd 87.7 28 0.0006 33.7 17.5 140 219-381 15-157 (266)
193 cd07940 DRE_TIM_IPMS 2-isoprop 87.5 21 0.00046 34.5 14.6 145 219-381 15-162 (268)
194 PRK14815 NADH dehydrogenase su 87.4 1.6 3.5E-05 39.5 6.1 73 60-137 34-114 (183)
195 TIGR02660 nifV_homocitr homoci 87.2 18 0.0004 36.6 14.6 140 219-380 18-160 (365)
196 CHL00023 ndhK NADH dehydrogena 87.0 1.2 2.6E-05 41.5 5.2 75 60-137 33-112 (225)
197 PF00682 HMGL-like: HMGL-like 86.8 3.1 6.7E-05 39.3 8.2 144 220-381 10-156 (237)
198 TIGR02090 LEU1_arch isopropylm 86.6 29 0.00063 35.2 15.6 142 218-381 16-160 (363)
199 PF08821 CGGC: CGGC domain; I 84.9 2.6 5.6E-05 34.9 5.7 61 60-131 40-105 (107)
200 TIGR03217 4OH_2_O_val_ald 4-hy 84.9 45 0.00098 33.4 17.6 161 219-413 19-184 (333)
201 PRK00915 2-isopropylmalate syn 84.9 24 0.00053 37.6 14.6 146 218-380 20-167 (513)
202 COG3260 Ni,Fe-hydrogenase III 84.8 1.9 4.1E-05 36.9 4.9 67 62-136 23-89 (148)
203 PRK14041 oxaloacetate decarbox 84.8 56 0.0012 34.4 17.0 143 220-381 21-172 (467)
204 cd07937 DRE_TIM_PC_TC_5S Pyruv 84.1 43 0.00093 32.5 15.8 143 220-381 17-168 (275)
205 PRK14814 NADH dehydrogenase su 83.2 2.4 5.1E-05 38.6 5.2 75 60-137 34-114 (186)
206 PRK08195 4-hyroxy-2-oxovalerat 82.3 58 0.0013 32.7 17.6 162 219-414 20-186 (337)
207 PRK07535 methyltetrahydrofolat 81.6 18 0.00039 35.0 11.0 143 218-374 19-183 (261)
208 cd07945 DRE_TIM_CMS Leptospira 81.4 29 0.00062 33.9 12.5 147 218-381 13-166 (280)
209 cd07941 DRE_TIM_LeuA3 Desulfob 80.6 58 0.0013 31.6 15.5 148 219-380 15-169 (273)
210 PRK14820 NADH dehydrogenase su 80.0 5.2 0.00011 36.2 6.2 68 65-137 41-114 (180)
211 cd00423 Pterin_binding Pterin 78.2 7.2 0.00016 37.5 7.1 141 218-374 18-194 (258)
212 PRK12344 putative alpha-isopro 76.4 80 0.0017 33.8 14.9 150 218-380 21-176 (524)
213 PRK09389 (R)-citramalate synth 75.9 1.1E+02 0.0024 32.4 16.1 142 218-381 18-162 (488)
214 TIGR00973 leuA_bact 2-isopropy 75.3 68 0.0015 34.1 14.0 145 218-380 17-164 (494)
215 COG3473 Maleate cis-trans isom 75.1 5.6 0.00012 36.8 4.9 32 58-92 118-149 (238)
216 PRK09432 metF 5,10-methylenete 74.7 61 0.0013 31.9 12.6 50 219-268 92-141 (296)
217 COG0685 MetF 5,10-methylenetet 74.3 56 0.0012 32.1 12.2 119 219-356 87-210 (291)
218 PRK13292 trifunctional NADH de 74.3 5.6 0.00012 44.4 5.7 76 60-138 23-104 (788)
219 PRK14817 NADH dehydrogenase su 73.1 6.1 0.00013 35.8 4.7 61 73-136 47-115 (181)
220 COG2014 Uncharacterized conser 72.7 6.9 0.00015 36.2 4.9 57 94-154 163-220 (250)
221 TIGR02082 metH 5-methyltetrahy 72.3 7.5 0.00016 45.5 6.3 76 59-136 733-824 (1178)
222 PRK09282 pyruvate carboxylase 71.9 1.6E+02 0.0034 32.2 16.3 142 220-379 22-171 (592)
223 COG1964 Predicted Fe-S oxidore 71.6 88 0.0019 32.5 12.9 157 209-387 78-243 (475)
224 PRK14040 oxaloacetate decarbox 71.0 1.6E+02 0.0035 32.0 16.0 144 220-381 23-174 (593)
225 TIGR02990 ectoine_eutA ectoine 69.3 21 0.00045 34.1 7.7 95 58-164 120-223 (239)
226 PF06180 CbiK: Cobalt chelatas 68.2 66 0.0014 31.1 10.9 150 223-394 57-215 (262)
227 cd07943 DRE_TIM_HOA 4-hydroxy- 68.0 1.2E+02 0.0025 29.2 17.1 138 219-380 17-159 (263)
228 TIGR00612 ispG_gcpE 1-hydroxy- 67.8 1.3E+02 0.0029 30.1 12.9 136 219-374 29-190 (346)
229 COG0821 gcpE 1-hydroxy-2-methy 67.0 1E+02 0.0022 30.9 11.8 139 219-374 31-192 (361)
230 PRK09490 metH B12-dependent me 66.9 11 0.00024 44.2 6.3 76 59-136 752-843 (1229)
231 cd00739 DHPS DHPS subgroup of 66.9 1.2E+02 0.0025 29.3 12.4 63 219-286 19-87 (257)
232 PRK11613 folP dihydropteroate 66.6 1.3E+02 0.0029 29.3 13.6 139 218-374 32-207 (282)
233 PLN03228 methylthioalkylmalate 66.6 1.3E+02 0.0028 32.1 13.6 149 218-381 100-258 (503)
234 TIGR01496 DHPS dihydropteroate 66.4 1.3E+02 0.0027 29.0 13.1 64 218-286 17-86 (257)
235 TIGR01108 oadA oxaloacetate de 66.0 2E+02 0.0044 31.2 17.2 142 220-379 17-166 (582)
236 COG3925 N-terminal domain of t 65.9 16 0.00035 29.2 5.0 48 75-133 20-67 (103)
237 PHA01735 hypothetical protein 64.5 10 0.00022 28.4 3.5 43 358-406 29-75 (76)
238 PF13552 DUF4127: Protein of u 63.8 22 0.00048 37.7 7.3 57 75-131 280-351 (497)
239 TIGR00977 LeuA_rel 2-isopropyl 63.7 2.1E+02 0.0046 30.6 16.1 151 218-382 17-174 (526)
240 PF00834 Ribul_P_3_epim: Ribul 63.2 1.3E+02 0.0027 27.9 12.2 153 220-416 8-162 (201)
241 TIGR00642 mmCoA_mut_beta methy 62.9 61 0.0013 35.4 10.6 102 58-162 494-613 (619)
242 PRK00366 ispG 4-hydroxy-3-meth 62.7 1.4E+02 0.0031 30.1 12.2 136 219-374 37-199 (360)
243 PF05818 TraT: Enterobacterial 62.6 14 0.0003 34.5 4.9 55 45-101 8-65 (215)
244 KOG3799 Rab3 effector RIM1 and 61.6 2.9 6.4E-05 35.5 0.3 17 197-213 75-91 (169)
245 TIGR03278 methan_mark_10 putat 61.0 18 0.00039 37.3 5.9 45 258-302 55-101 (404)
246 TIGR01754 flav_RNR ribonucleot 59.3 30 0.00065 29.7 6.3 62 75-136 18-92 (140)
247 PLN02321 2-isopropylmalate syn 58.8 1.8E+02 0.0039 31.9 13.3 146 218-381 102-259 (632)
248 cd03315 MLE_like Muconate lact 58.5 1.5E+02 0.0032 28.4 11.6 93 222-325 85-177 (265)
249 KOG1160 Fe-S oxidoreductase [E 58.1 2.3E+02 0.0049 29.6 12.7 116 306-425 404-526 (601)
250 PF08902 DUF1848: Domain of un 57.6 1.7E+02 0.0037 28.3 11.5 50 220-271 55-110 (266)
251 COG1618 Predicted nucleotide k 55.3 1.2E+02 0.0026 27.3 9.2 90 71-167 82-176 (179)
252 cd00537 MTHFR Methylenetetrahy 54.9 1.8E+02 0.004 27.9 11.7 120 220-359 69-198 (274)
253 TIGR00696 wecB_tagA_cpsF bacte 54.8 69 0.0015 29.0 8.0 55 328-386 57-111 (177)
254 cd05014 SIS_Kpsf KpsF-like pro 54.7 56 0.0012 27.1 7.1 67 63-132 3-82 (128)
255 PRK09282 pyruvate carboxylase 54.5 2.8E+02 0.0061 30.2 13.9 124 221-375 151-274 (592)
256 COG1941 FrhG Coenzyme F420-red 54.4 28 0.0006 33.0 5.4 67 66-137 15-90 (247)
257 PRK12330 oxaloacetate decarbox 54.2 3E+02 0.0065 29.3 15.0 52 220-271 23-75 (499)
258 PRK12331 oxaloacetate decarbox 54.2 2.8E+02 0.0061 29.0 17.4 141 220-381 22-173 (448)
259 COG5012 Predicted cobalamin bi 53.7 32 0.00069 32.3 5.6 51 74-126 120-184 (227)
260 COG5561 Predicted metal-bindin 53.6 89 0.0019 24.9 7.1 65 58-132 28-97 (101)
261 COG1679 Predicted aconitase [G 53.5 27 0.00059 35.2 5.5 70 60-136 289-359 (403)
262 PRK09271 flavodoxin; Provision 53.0 46 0.00099 29.3 6.5 60 75-134 18-94 (160)
263 PRK14042 pyruvate carboxylase 52.9 3.4E+02 0.0074 29.6 15.9 49 223-271 25-74 (596)
264 TIGR01227 hutG formimidoylglut 52.7 2E+02 0.0043 28.4 11.6 157 223-389 97-289 (307)
265 PRK12330 oxaloacetate decarbox 52.4 2.1E+02 0.0045 30.5 12.1 55 221-281 152-206 (499)
266 cd03409 Chelatase_Class_II Cla 52.3 70 0.0015 25.2 7.0 60 329-392 16-75 (101)
267 PRK12331 oxaloacetate decarbox 52.2 2.5E+02 0.0053 29.5 12.6 123 221-374 151-273 (448)
268 PRK15452 putative protease; Pr 52.1 77 0.0017 33.1 8.9 82 294-383 15-97 (443)
269 PRK08005 epimerase; Validated 51.2 1.6E+02 0.0034 27.5 10.0 136 220-395 9-146 (210)
270 TIGR00676 fadh2 5,10-methylene 51.1 1.9E+02 0.0042 27.9 11.1 130 220-372 69-206 (272)
271 cd02072 Glm_B12_BD B12 binding 50.7 79 0.0017 27.0 7.2 57 327-392 62-119 (128)
272 PLN02540 methylenetetrahydrofo 49.6 2E+02 0.0043 31.2 11.5 51 219-269 68-124 (565)
273 COG0159 TrpA Tryptophan syntha 49.5 2.5E+02 0.0055 27.2 11.8 26 320-345 69-94 (265)
274 TIGR03572 WbuZ glycosyl amidat 49.5 2.2E+02 0.0048 26.5 11.9 132 226-386 32-177 (232)
275 cd04731 HisF The cyclase subun 48.1 2.4E+02 0.0052 26.5 11.9 136 224-386 27-173 (243)
276 cd03412 CbiK_N Anaerobic cobal 47.9 79 0.0017 26.8 6.9 61 331-391 18-85 (127)
277 PF10649 DUF2478: Protein of u 47.4 35 0.00076 30.4 4.7 61 64-130 68-128 (159)
278 COG2875 CobM Precorrin-4 methy 47.4 1.9E+02 0.0042 27.4 9.7 35 219-253 57-91 (254)
279 cd05013 SIS_RpiR RpiR-like pro 47.3 1E+02 0.0022 25.4 7.6 70 59-133 14-96 (139)
280 TIGR01501 MthylAspMutase methy 47.0 91 0.002 26.9 7.1 58 326-392 63-121 (134)
281 TIGR03127 RuMP_HxlB 6-phospho 46.8 1E+02 0.0022 27.4 8.0 73 58-135 30-110 (179)
282 PF06283 ThuA: Trehalose utili 46.8 46 0.001 30.8 5.8 59 73-134 19-88 (217)
283 PF03808 Glyco_tran_WecB: Glyc 46.1 77 0.0017 28.3 6.9 55 329-386 58-112 (172)
284 PF08392 FAE1_CUT1_RppA: FAE1/ 45.8 25 0.00055 34.4 3.9 56 78-138 91-150 (290)
285 cd04723 HisA_HisF Phosphoribos 44.6 2.7E+02 0.0059 26.1 11.3 130 225-386 36-169 (233)
286 PRK03501 ppnK inorganic polyph 44.2 1.2E+02 0.0026 29.3 8.3 60 58-123 2-61 (264)
287 PRK00923 sirohydrochlorin coba 44.2 1E+02 0.0022 25.8 7.1 60 329-393 17-77 (126)
288 PF03698 UPF0180: Uncharacteri 43.8 35 0.00075 26.7 3.6 26 77-102 12-42 (80)
289 PRK10812 putative DNAse; Provi 43.2 1.4E+02 0.0031 28.7 8.7 107 222-351 21-130 (265)
290 PRK11543 gutQ D-arabinose 5-ph 43.2 1E+02 0.0022 30.3 8.0 71 59-134 43-126 (321)
291 PRK08883 ribulose-phosphate 3- 43.0 1.5E+02 0.0032 27.8 8.6 136 220-395 8-146 (220)
292 cd05005 SIS_PHI Hexulose-6-pho 42.4 1.3E+02 0.0028 26.8 7.9 73 59-136 34-114 (179)
293 cd01301 rDP_like renal dipepti 42.3 3.5E+02 0.0076 26.7 13.0 133 227-381 116-261 (309)
294 PF00809 Pterin_bind: Pterin b 40.8 84 0.0018 29.1 6.5 65 219-286 14-83 (210)
295 PRK03094 hypothetical protein; 40.2 44 0.00096 26.1 3.7 26 78-103 13-43 (80)
296 COG1152 CdhA CO dehydrogenase/ 39.9 45 0.00099 35.6 4.8 55 82-137 487-541 (772)
297 TIGR00736 nifR3_rel_arch TIM-b 39.2 2.6E+02 0.0055 26.5 9.5 136 228-385 33-171 (231)
298 PRK13585 1-(5-phosphoribosyl)- 39.2 3.3E+02 0.007 25.4 11.9 131 226-385 34-172 (241)
299 PRK08091 ribulose-phosphate 3- 38.9 3.4E+02 0.0074 25.6 16.4 153 219-415 20-174 (228)
300 PLN02495 oxidoreductase, actin 38.9 1E+02 0.0022 31.6 7.2 58 327-387 95-152 (385)
301 TIGR03555 F420_mer 5,10-methyl 38.8 3.4E+02 0.0073 26.8 10.9 105 221-342 9-122 (325)
302 COG0119 LeuA Isopropylmalate/h 38.6 4.7E+02 0.01 27.1 14.7 146 218-381 18-165 (409)
303 COG0826 Collagenase and relate 38.3 1.8E+02 0.0038 29.5 8.7 82 295-383 19-100 (347)
304 PRK02271 methylenetetrahydrome 38.0 3.9E+02 0.0084 26.4 11.2 104 222-342 12-124 (325)
305 PF04412 DUF521: Protein of un 37.9 51 0.0011 33.9 4.9 74 56-136 285-359 (400)
306 smart00876 BATS Biotin and Thi 37.8 35 0.00075 27.3 3.0 27 381-407 2-29 (94)
307 PF06968 BATS: Biotin and Thia 37.7 42 0.00092 26.7 3.5 28 381-408 2-29 (93)
308 PRK13731 conjugal transfer sur 37.6 29 0.00064 32.8 2.8 43 58-101 50-95 (243)
309 PRK09722 allulose-6-phosphate 37.5 2.8E+02 0.006 26.2 9.4 152 220-415 11-164 (229)
310 cd06533 Glyco_transf_WecG_TagA 37.2 1.2E+02 0.0025 27.2 6.6 56 328-386 55-110 (171)
311 PRK08745 ribulose-phosphate 3- 37.2 2.5E+02 0.0054 26.4 9.1 137 219-395 11-150 (223)
312 PRK14024 phosphoribosyl isomer 36.7 3.7E+02 0.008 25.3 13.8 130 225-384 33-168 (241)
313 TIGR00284 dihydropteroate synt 36.6 3E+02 0.0065 29.3 10.4 127 224-373 165-305 (499)
314 PRK06703 flavodoxin; Provision 36.5 93 0.002 26.8 5.8 62 76-137 20-94 (151)
315 PRK13111 trpA tryptophan synth 36.4 1.3E+02 0.0027 29.0 7.1 19 361-379 128-146 (258)
316 COG0648 Nfo Endonuclease IV [D 36.2 4.2E+02 0.0091 25.9 10.9 120 218-378 81-207 (280)
317 PF13714 PEP_mutase: Phosphoen 36.1 3.1E+02 0.0067 26.1 9.6 83 327-415 52-134 (238)
318 cd01836 FeeA_FeeB_like SGNH_hy 36.1 1.4E+02 0.003 26.5 7.1 67 60-134 40-115 (191)
319 cd06556 ICL_KPHMT Members of t 35.2 1.2E+02 0.0026 28.9 6.6 54 327-381 55-108 (240)
320 cd07942 DRE_TIM_LeuA Mycobacte 34.7 4.5E+02 0.0097 25.7 14.6 143 218-374 17-168 (284)
321 cd00452 KDPG_aldolase KDPG and 34.5 3.5E+02 0.0075 24.4 13.7 119 218-386 10-128 (190)
322 COG1647 Esterase/lipase [Gener 34.2 3.1E+02 0.0067 26.0 8.9 113 223-356 69-190 (243)
323 TIGR00393 kpsF KpsF/GutQ famil 34.0 1.7E+02 0.0036 27.8 7.6 67 64-133 4-83 (268)
324 PRK12581 oxaloacetate decarbox 33.7 6E+02 0.013 26.9 16.9 142 221-381 32-182 (468)
325 COG1832 Predicted CoA-binding 33.4 1.6E+02 0.0034 25.6 6.3 67 58-132 16-104 (140)
326 PRK02261 methylaspartate mutas 33.0 1.5E+02 0.0034 25.4 6.5 50 327-380 66-117 (137)
327 cd03413 CbiK_C Anaerobic cobal 33.0 2.7E+02 0.0058 22.6 8.7 60 329-394 15-74 (103)
328 PRK11557 putative DNA-binding 32.7 1.8E+02 0.0038 28.0 7.6 72 58-134 128-212 (278)
329 TIGR03842 F420_CPS_4043 F420-d 32.6 4.8E+02 0.01 25.8 10.9 106 221-343 10-123 (330)
330 PRK13774 formimidoylglutamase; 32.4 4.8E+02 0.01 25.7 10.7 157 223-389 106-293 (311)
331 PRK11104 hemG protoporphyrinog 32.3 1.6E+02 0.0035 26.4 6.8 63 71-134 13-87 (177)
332 COG0377 NuoB NADH:ubiquinone o 32.2 68 0.0015 29.1 4.1 55 82-137 62-116 (194)
333 PF04551 GcpE: GcpE protein; 32.2 1.1E+02 0.0024 30.8 6.0 29 219-247 26-54 (359)
334 KOG1687 NADH-ubiquinone oxidor 31.9 54 0.0012 28.1 3.2 75 60-135 33-110 (168)
335 TIGR03217 4OH_2_O_val_ald 4-hy 31.8 2.2E+02 0.0048 28.5 8.2 48 220-271 139-186 (333)
336 PF01261 AP_endonuc_2: Xylose 31.6 3.7E+02 0.0079 23.8 10.5 54 329-384 26-93 (213)
337 PRK05568 flavodoxin; Provision 31.4 1.3E+02 0.0029 25.4 5.9 61 76-136 20-93 (142)
338 PF04481 DUF561: Protein of un 31.3 4.5E+02 0.0098 24.8 14.4 131 218-381 21-151 (242)
339 cd05008 SIS_GlmS_GlmD_1 SIS (S 31.3 1.8E+02 0.0039 23.8 6.6 66 65-133 4-82 (126)
340 COG5016 Pyruvate/oxaloacetate 31.2 6.1E+02 0.013 26.3 11.4 119 218-356 92-212 (472)
341 PRK10494 hypothetical protein; 31.2 1.1E+02 0.0024 29.4 5.8 61 73-134 57-130 (259)
342 cd00635 PLPDE_III_YBL036c_like 30.7 2.6E+02 0.0057 25.8 8.2 63 306-374 117-184 (222)
343 cd04732 HisA HisA. Phosphorib 30.3 4.4E+02 0.0095 24.3 10.1 133 225-384 30-168 (234)
344 PF00490 ALAD: Delta-aminolevu 30.3 1.5E+02 0.0032 29.5 6.4 54 218-271 51-111 (324)
345 PRK09529 bifunctional acetyl-C 30.3 1.5E+02 0.0033 32.5 7.0 57 80-140 121-177 (711)
346 cd01744 GATase1_CPSase Small c 30.2 1.4E+02 0.003 26.7 6.0 23 61-89 1-23 (178)
347 PRK00694 4-hydroxy-3-methylbut 30.1 5E+02 0.011 28.1 10.6 28 219-246 40-67 (606)
348 PF03016 Exostosin: Exostosin 30.0 62 0.0013 31.2 4.0 35 68-103 32-67 (302)
349 PF10087 DUF2325: Uncharacteri 29.9 1.7E+02 0.0036 23.3 5.8 35 94-131 47-81 (97)
350 PRK07308 flavodoxin; Validated 29.6 3.5E+02 0.0076 23.0 8.3 60 75-134 19-91 (146)
351 KOG2368 Hydroxymethylglutaryl- 29.5 2E+02 0.0044 27.2 6.8 64 191-271 149-212 (316)
352 cd01822 Lysophospholipase_L1_l 29.2 3E+02 0.0064 23.8 8.0 66 60-133 36-109 (177)
353 COG0113 HemB Delta-aminolevuli 29.1 4.6E+02 0.0099 26.0 9.4 76 192-271 33-115 (330)
354 COG2513 PrpB PEP phosphonomuta 28.9 4.7E+02 0.01 25.6 9.5 83 321-411 51-143 (289)
355 PRK10425 DNase TatD; Provision 28.9 4.9E+02 0.011 24.9 9.9 76 222-314 16-96 (258)
356 cd03063 TRX_Fd_FDH_beta TRX-li 28.5 1.7E+02 0.0037 23.4 5.5 69 99-167 5-79 (92)
357 cd03416 CbiX_SirB_N Sirohydroc 28.2 3E+02 0.0065 21.7 7.9 61 329-393 15-75 (101)
358 cd00950 DHDPS Dihydrodipicolin 28.2 3.8E+02 0.0081 25.8 9.1 49 328-379 51-99 (284)
359 PRK08195 4-hyroxy-2-oxovalerat 28.0 2.7E+02 0.0059 27.9 8.2 55 221-281 141-195 (337)
360 PRK07455 keto-hydroxyglutarate 27.9 4.6E+02 0.0099 23.7 11.6 43 218-269 18-60 (187)
361 PRK03170 dihydrodipicolinate s 27.9 3.6E+02 0.0078 26.1 8.9 27 352-378 73-99 (292)
362 PRK00957 methionine synthase; 27.6 5.8E+02 0.013 24.8 10.5 64 345-416 237-303 (305)
363 TIGR00007 phosphoribosylformim 27.5 4.9E+02 0.011 24.0 11.6 135 225-386 29-169 (230)
364 cd03316 MR_like Mandelate race 27.4 5.8E+02 0.012 25.4 10.6 96 222-323 139-235 (357)
365 PRK06242 flavodoxin; Provision 27.2 73 0.0016 27.3 3.5 44 93-136 41-85 (150)
366 PRK06756 flavodoxin; Provision 27.2 3.8E+02 0.0083 22.8 8.1 61 75-135 19-93 (148)
367 PRK11337 DNA-binding transcrip 27.2 2E+02 0.0042 27.9 6.9 74 58-136 140-226 (292)
368 PRK12581 oxaloacetate decarbox 26.9 6.7E+02 0.014 26.5 11.0 123 221-374 160-282 (468)
369 cd01096 Alkanal_monooxygenase 26.7 6.1E+02 0.013 24.8 10.6 109 222-342 20-138 (315)
370 TIGR01918 various_sel_PB selen 26.7 2.9E+02 0.0063 28.6 8.0 65 60-136 306-375 (431)
371 TIGR01748 rhaA L-rhamnose isom 26.6 4.6E+02 0.01 26.9 9.3 63 321-384 60-132 (414)
372 TIGR00262 trpA tryptophan synt 26.5 5.8E+02 0.012 24.4 10.4 23 357-379 122-144 (256)
373 COG0036 Rpe Pentose-5-phosphat 26.4 5.5E+02 0.012 24.1 11.5 83 226-323 73-157 (220)
374 PF13590 DUF4136: Domain of un 26.4 70 0.0015 27.4 3.2 43 59-103 18-67 (151)
375 TIGR01723 hmd_TIGR 5,10-methen 26.2 2E+02 0.0042 28.3 6.3 40 98-142 168-207 (340)
376 PLN02932 3-ketoacyl-CoA syntha 26.2 75 0.0016 33.6 3.9 57 78-139 156-216 (478)
377 cd04795 SIS SIS domain. SIS (S 26.2 2.8E+02 0.0061 20.7 6.7 33 94-129 46-78 (87)
378 cd03142 GATase1_ThuA Type 1 gl 25.9 1.8E+02 0.0038 27.3 5.9 32 75-106 25-69 (215)
379 PRK09283 delta-aminolevulinic 25.7 3.1E+02 0.0067 27.3 7.7 51 218-271 53-111 (323)
380 TIGR01917 gly_red_sel_B glycin 25.7 3.2E+02 0.0069 28.4 8.0 66 59-136 305-375 (431)
381 cd03321 mandelate_racemase Man 25.3 3.9E+02 0.0085 26.7 8.9 138 222-377 141-290 (355)
382 PRK13384 delta-aminolevulinic 25.2 3.4E+02 0.0074 27.0 7.9 51 218-271 55-113 (322)
383 PRK01076 L-rhamnose isomerase; 25.2 6.5E+02 0.014 26.0 10.0 107 322-433 65-187 (419)
384 cd05006 SIS_GmhA Phosphoheptos 25.0 3E+02 0.0066 24.3 7.3 38 94-134 100-138 (177)
385 PRK05474 xylose isomerase; Pro 24.8 4.8E+02 0.01 27.2 9.1 143 233-377 88-258 (437)
386 TIGR00695 uxuA mannonate dehyd 24.8 1.4E+02 0.0031 30.6 5.5 48 327-376 40-97 (394)
387 PRK13146 hisH imidazole glycer 24.7 3.6E+02 0.0079 24.8 7.9 42 58-103 1-49 (209)
388 cd03414 CbiX_SirB_C Sirohydroc 24.7 3.2E+02 0.0069 22.2 6.9 59 329-391 16-74 (117)
389 TIGR03294 FrhG coenzyme F420 h 24.6 66 0.0014 30.3 2.9 40 93-134 48-88 (228)
390 cd04823 ALAD_PBGS_aspartate_ri 24.6 3.4E+02 0.0074 27.0 7.8 54 218-271 48-108 (320)
391 PRK13210 putative L-xylulose 5 24.3 5.8E+02 0.012 24.2 9.6 20 362-381 94-113 (284)
392 cd00384 ALAD_PBGS Porphobilino 24.2 3.7E+02 0.0081 26.6 7.9 51 218-271 45-103 (314)
393 COG1121 ZnuC ABC-type Mn/Zn tr 24.2 2.1E+02 0.0045 27.6 6.2 61 70-130 112-194 (254)
394 cd05569 PTS_IIB_fructose PTS_I 24.2 80 0.0017 25.3 2.9 37 67-103 6-61 (96)
395 PLN02746 hydroxymethylglutaryl 24.1 7.5E+02 0.016 24.9 12.6 63 192-271 178-240 (347)
396 TIGR00542 hxl6Piso_put hexulos 24.0 5.6E+02 0.012 24.4 9.5 14 329-342 93-106 (279)
397 PRK00278 trpC indole-3-glycero 24.0 2.5E+02 0.0055 26.9 6.9 92 62-153 135-242 (260)
398 TIGR03168 1-PFK hexose kinase, 23.9 3.9E+02 0.0085 25.6 8.4 66 59-131 98-163 (303)
399 PF15609 PRTase_2: Phosphoribo 23.9 3E+02 0.0066 25.2 6.8 64 195-271 81-149 (191)
400 cd03319 L-Ala-DL-Glu_epimerase 23.7 6.9E+02 0.015 24.4 12.3 92 222-325 134-225 (316)
401 PF04495 GRASP55_65: GRASP55/6 23.6 39 0.00085 29.3 1.1 46 339-386 56-101 (138)
402 cd04824 eu_ALAD_PBGS_cysteine_ 23.6 3.9E+02 0.0085 26.5 7.9 54 218-271 45-106 (320)
403 PRK05569 flavodoxin; Provision 23.5 2.1E+02 0.0045 24.2 5.7 61 76-136 20-94 (141)
404 cd03329 MR_like_4 Mandelate ra 23.5 6.5E+02 0.014 25.3 10.1 54 221-281 142-195 (368)
405 PRK14042 pyruvate carboxylase 23.3 2.2E+02 0.0047 31.1 6.8 46 333-378 63-112 (596)
406 smart00292 BRCT breast cancer 23.3 2.8E+02 0.0061 19.7 5.9 43 60-105 7-51 (80)
407 PF03709 OKR_DC_1_N: Orn/Lys/A 23.2 3.1E+02 0.0066 22.6 6.4 57 74-133 5-75 (115)
408 PF02784 Orn_Arg_deC_N: Pyrido 23.0 4.9E+02 0.011 24.4 8.7 143 227-391 51-212 (251)
409 TIGR01753 flav_short flavodoxi 22.9 2.1E+02 0.0046 23.8 5.6 61 76-136 17-91 (140)
410 cd06808 PLPDE_III Type III Pyr 22.9 5.5E+02 0.012 22.9 13.1 47 307-359 108-156 (211)
411 TIGR00695 uxuA mannonate dehyd 22.9 2.8E+02 0.0061 28.5 7.2 134 219-358 38-183 (394)
412 TIGR00288 conserved hypothetic 22.8 2.8E+02 0.006 24.7 6.3 53 75-133 68-137 (160)
413 PRK10892 D-arabinose 5-phospha 22.7 4E+02 0.0087 26.1 8.3 71 59-134 48-131 (326)
414 PF02219 MTHFR: Methylenetetra 22.6 7.1E+02 0.015 24.1 12.2 114 220-353 81-208 (287)
415 PTZ00120 D-tyrosyl-tRNA(Tyr) d 22.5 2.6E+02 0.0057 24.7 6.0 59 375-434 71-137 (154)
416 PLN02615 arginase 22.5 7.9E+02 0.017 24.6 12.8 155 223-389 132-315 (338)
417 COG1410 MetH Methionine syntha 22.4 93 0.002 34.5 3.7 55 80-136 429-498 (842)
418 cd00954 NAL N-Acetylneuraminic 22.0 6.8E+02 0.015 24.2 9.6 49 328-379 52-100 (288)
419 cd02803 OYE_like_FMN_family Ol 21.9 6E+02 0.013 24.9 9.4 54 332-385 194-251 (327)
420 PRK13143 hisH imidazole glycer 21.9 2.9E+02 0.0064 25.1 6.6 71 59-134 1-79 (200)
421 cd03328 MR_like_3 Mandelate ra 21.7 8.1E+02 0.018 24.5 10.5 94 221-325 137-230 (352)
422 TIGR00674 dapA dihydrodipicoli 21.7 6.3E+02 0.014 24.3 9.3 51 328-381 49-99 (285)
423 COG1490 Dtd D-Tyr-tRNAtyr deac 21.6 2.9E+02 0.0062 24.0 5.8 65 351-415 28-110 (145)
424 PF08123 DOT1: Histone methyla 21.4 65 0.0014 29.9 2.1 36 94-130 121-156 (205)
425 COG2355 Zn-dependent dipeptida 21.4 3.3E+02 0.0071 27.1 7.1 85 284-377 199-291 (313)
426 PRK00961 H(2)-dependent methyl 21.3 1.6E+02 0.0035 28.7 4.7 39 98-141 170-208 (342)
427 PRK10294 6-phosphofructokinase 21.3 4.8E+02 0.01 25.2 8.5 65 59-131 102-166 (309)
428 PF04028 DUF374: Domain of unk 21.3 2.8E+02 0.0061 21.2 5.2 48 71-131 18-65 (74)
429 cd00408 DHDPS-like Dihydrodipi 21.2 6.3E+02 0.014 24.1 9.2 51 328-381 48-98 (281)
430 TIGR00735 hisF imidazoleglycer 21.2 7.1E+02 0.015 23.5 12.0 136 225-390 31-182 (254)
431 PF05853 DUF849: Prokaryotic p 21.2 7.2E+02 0.016 24.0 9.4 53 218-271 20-74 (272)
432 TIGR00441 gmhA phosphoheptose 21.1 2.2E+02 0.0049 24.7 5.4 37 94-133 78-115 (154)
433 PRK06444 prephenate dehydrogen 21.0 1.6E+02 0.0034 27.1 4.6 39 75-121 13-51 (197)
434 TIGR00492 alr alanine racemase 20.9 8.5E+02 0.018 24.4 11.0 34 306-347 120-154 (367)
435 cd01164 FruK_PfkB_like 1-phosp 20.7 4.7E+02 0.01 24.8 8.2 64 60-130 100-163 (289)
436 PF03851 UvdE: UV-endonuclease 20.7 5.2E+02 0.011 25.2 8.2 61 222-287 43-109 (275)
437 COG0036 Rpe Pentose-5-phosphat 20.6 7.2E+02 0.016 23.4 9.6 139 219-395 11-149 (220)
438 PF00072 Response_reg: Respons 20.6 4.1E+02 0.0089 20.6 8.0 90 71-162 7-111 (112)
439 PRK14847 hypothetical protein; 20.6 8.7E+02 0.019 24.4 11.1 150 208-371 35-193 (333)
440 PRK13587 1-(5-phosphoribosyl)- 20.5 7.2E+02 0.016 23.3 13.3 134 227-390 34-175 (234)
441 PRK14041 oxaloacetate decarbox 20.3 1E+03 0.022 25.1 12.4 123 221-374 150-272 (467)
442 COG4252 Predicted transmembran 20.3 6.2E+02 0.013 26.1 9.0 44 314-359 66-111 (400)
443 PF13580 SIS_2: SIS domain; PD 20.2 1.4E+02 0.003 25.5 3.8 36 94-132 102-138 (138)
444 PF00682 HMGL-like: HMGL-like 20.1 7E+02 0.015 23.1 9.3 54 221-281 134-187 (237)
445 PF04748 Polysacc_deac_2: Dive 20.1 2.2E+02 0.0048 26.5 5.4 83 294-376 36-120 (213)
446 COG1794 RacX Aspartate racemas 20.1 68 0.0015 30.2 1.9 74 57-134 116-197 (230)
No 1
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=100.00 E-value=2.7e-96 Score=699.33 Aligned_cols=441 Identities=65% Similarity=1.066 Sum_probs=418.1
Q ss_pred CCchhhhhhcCCCCCCCCCCCCCCCccccccccCCCCCCccCCcccccCCCCCCCCCCceEEEEecCCccChhHHHHHHH
Q 013195 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAG 80 (448)
Q Consensus 1 ~~~~ed~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~GC~~N~~dse~~~~ 80 (448)
|||||||+++ +|++|++|++. ++.|+||.||+...+-....++..+.+|.|||++++||+||||++|++|||||++
T Consensus 1 ~ddiedl~s~---~d~kp~~r~~~-~k~v~pk~~kr~~~k~~q~ee~~~ps~s~ipgtqki~iktwgcshnnsdseymag 76 (547)
T KOG4355|consen 1 MDDIEDLLSG---GDAKPGFRLPL-NKVVNPKTNKRISSKPDQIEESNRPSSSKIPGTQKIYIKTWGCSHNNSDSEYMAG 76 (547)
T ss_pred CccHHHHhhC---CCCCCcccccc-ccccccccccccccCchhhhhcCCCccccCCCccEEEEEeecccCCCchhHHHhh
Confidence 7999999955 59999999994 4459999988654332223334446789999999999999999999999999999
Q ss_pred HHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccccchhhhcCCccEEEcCCchhHHHH
Q 013195 81 QLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVE 160 (448)
Q Consensus 81 ~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e~~~~~~d~vvg~~~~~~i~~ 160 (448)
+|++.||.++. +++||+|++|||||.++++..+++.|.+.++.++++|++||.||..|++..+.+.+|+|.++++++++
T Consensus 77 qlaaygy~lte-~eeadlwllnsctvknpsed~frn~i~~g~~~~k~~viagcvpqg~p~~dyl~glsvigvqqidrvve 155 (547)
T KOG4355|consen 77 QLAAYGYALTE-PEEADLWLLNSCTVKNPSEDAFRNLITRGRSGKKPLVIAGCVPQGSPDLDYLEGLSVIGVQQIDRVVE 155 (547)
T ss_pred hHHhhhhccCC-cccccEEEecccccCCchHHHHHHHHHhhhcCCCceEEEecCCCCCcchhhhcCceEeehhhhhHHHH
Confidence 99999999998 89999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHHHHhcCCceEeecccCCCCCCCCcccCCCcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcE
Q 013195 161 VVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240 (448)
Q Consensus 161 ~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~e 240 (448)
++++.++|+.++++.....+.+++|+.|++++..+|.|+.||.+.|+||..+++||..-|++++++++.++...+.|+.+
T Consensus 156 vveetlkghsvrll~rr~~galdlpkvrknplieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~e 235 (547)
T KOG4355|consen 156 VVEETLKGHSVRLLTRRTLGALDLPKVRKNPLIEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVCE 235 (547)
T ss_pred HHHHHhccceEeeeecccccccCchhhccCCceEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcEE
Confidence 99999999999999887788899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHH
Q 013195 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320 (448)
Q Consensus 241 i~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vL 320 (448)
||+++.|+++||+|.+.+++.||+++.+.+| ..+.+|+++++|..+.+++++++..+++++++.++|+|+|||||.+|
T Consensus 236 IwltsedTgaygrdig~slp~ll~klv~~iP--e~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl 313 (547)
T KOG4355|consen 236 IWLTSEDTGAYGRDIGKSLPKLLWKLVEVIP--ESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVL 313 (547)
T ss_pred EEecccccchhhhhhhhhhHHHHHHHHHhcc--hhhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHH
Confidence 9999999999999999999999999999998 78999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCCCCCH
Q 013195 321 SAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 400 (448)
Q Consensus 321 k~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~~v~~ 400 (448)
-.|+|.|...++..+++.+++.+|||.|.||+|+||||||++||++|++++++++|..+++++|+|+||||+++|+++|.
T Consensus 314 ~emkreyc~~dfk~Vvd~LterVPgi~IATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPRpGTPAAkmkki~a 393 (547)
T KOG4355|consen 314 TEMKREYCNFDFKIVVDFLTERVPGITIATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPGTPAAKMKKIPA 393 (547)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhCCCcEEeeeeeecCCCCchHHHHHHHHHHHHccCchhhhhhcCCCCCChHHhhhcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhchhhcCCCcEEEEEEEEEecCCceEEEeeCC
Q 013195 401 AVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448 (448)
Q Consensus 401 ~~~~~R~~~l~~~~~~~~~~~~~~g~~~~vlve~~~~~~~~~~g~~~~ 448 (448)
.++++|.+.|.+++.++..|...+|+...|||++++.|+.+++|||++
T Consensus 394 ~~vkkRTk~ls~lF~sy~pYtd~ige~~rVlVTEva~Dklh~VgHnks 441 (547)
T KOG4355|consen 394 VEVKKRTKALSELFRSYTPYTDEIGELHRVLVTEVAADKLHYVGHNKS 441 (547)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccccEEEEEEEEeeccceeeeccccc
Confidence 999999999999999999999999999999999999998899999975
No 2
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.3e-91 Score=699.46 Aligned_cols=385 Identities=35% Similarity=0.622 Sum_probs=344.1
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCC-eeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCC--CCEEEEccc
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGY-ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCV 134 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~-~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~--~~vVvgGc~ 134 (448)
|+||||+||||+||++|||.|++.|.+.|| +.++++++||+|+||||+|+.+|++++++.|+++++.+ .+|+|+||+
T Consensus 2 ~~kv~i~T~GC~~N~~DSe~m~~~L~~~G~~~~~~~~~eADvviiNTC~V~~~a~~k~~~~i~~~~~~~p~~~iiVtGC~ 81 (437)
T COG0621 2 MKKVYIETLGCQMNLYDSERMAGLLEAAGYEELVEDPEEADVVIINTCAVREKAEQKVRSAIGELKKLKPDAKIIVTGCL 81 (437)
T ss_pred CceEEEEecCCCccHHHHHHHHHHHHHcCCccccCCcccCCEEEEecCeeeehHHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 689999999999999999999999999999 69999999999999999999999999999999987765 579999999
Q ss_pred cccchhh-hcCC-ccEEEcCCchhHHHHHHHHHhcCCceE--eecccCCCC-CCCCcccCCCcEEEEEeCCCCCCCccce
Q 013195 135 PQGSRDL-KELE-GVSIVGVQQIDRVVEVVEETLKGHEVR--LLHRKKLPA-LDLPKVRRNKFVEILPINVGCLGACTYC 209 (448)
Q Consensus 135 a~~~~e~-~~~~-~d~vvg~~~~~~i~~~l~~~~~g~~~~--~~~~~~~~~-~~~p~~~~~~~~~~i~isrGC~~~CsFC 209 (448)
||..+++ ..++ +|.|+|++.+++++++|++...+.... .....+... ..++..+.....|||+|+.||+++||||
T Consensus 82 aq~~~~i~~~~p~vd~v~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~v~I~eGCn~~CtfC 161 (437)
T COG0621 82 AQAEEEILERAPEVDIVLGPQNKERLPEAIEKALRGKKEFVVVLSFPEEEKFDKLPPRREGGVRAFVKIQEGCNKFCTFC 161 (437)
T ss_pred cccCHHHHhhCCCceEEECCccHHHHHHHHHHHhhcccccccccccccccccccCCCCcCCCeEEEEEhhcCcCCCCCee
Confidence 9999664 5665 689999999999999999886543222 111111111 1233336678899999999999999999
Q ss_pred eeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC---CCHHHHHHHHHHhCCCCCcceEEEeecCCc
Q 013195 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (448)
Q Consensus 210 ~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~---~~l~~ll~~l~~~~~~~~~~~iri~~~~p~ 286 (448)
++|++||+.||||+++|++|++.|+++|++||+|+|+|+++||.|.+ .+|.+||++|.+ ++ +..|+|++|++|.
T Consensus 162 iiP~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~-I~--G~~riR~~~~~P~ 238 (437)
T COG0621 162 IIPYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSK-IP--GIERIRFGSSHPL 238 (437)
T ss_pred eeeccCCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhc-CC--CceEEEEecCCch
Confidence 99999999999999999999999999999999999999999999975 789999999988 66 8999999999998
Q ss_pred ChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHH
Q 013195 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 366 (448)
Q Consensus 287 ~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~ 366 (448)
.+++.+ +..+...+++|+++|||+|||||+||++|+|+||.+++.+.++++|+.+|++.++|||||||||||+|||++
T Consensus 239 ~~~d~l--I~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgETeedFe~ 316 (437)
T COG0621 239 EFTDDL--IEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPGETEEDFEE 316 (437)
T ss_pred hcCHHH--HHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceEeccEEEECCCCCHHHHHH
Confidence 888776 545555589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEEEEEE-ecCCceE
Q 013195 367 TVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEI-AADGIHL 442 (448)
Q Consensus 367 tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vlve~~-~~~~~~~ 442 (448)
|++|+++.+|+++|+|+|||+||||++.|+ |+|.+++++|+++|+++++. .+.+++++|++++||||+. ++++ .+
T Consensus 317 tl~lv~e~~fd~~~~F~YSpRpGTpAa~~~~qvp~~vkkeR~~~L~~l~~~~~~~~~~~~vG~~~~VLVe~~~~~~~-~~ 395 (437)
T COG0621 317 TLDLVEEVRFDRLHVFKYSPRPGTPAALMPDQVPEEVKKERLRRLQELQQQISAEFNQKLVGKTLEVLVEEGGSKKG-EL 395 (437)
T ss_pred HHHHHHHhCCCEEeeeecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEeccCcCC-ce
Confidence 999999999999999999999999999988 99999999999999999984 6789999999999999963 3445 68
Q ss_pred EEeeCC
Q 013195 443 VRLEQF 448 (448)
Q Consensus 443 ~g~~~~ 448 (448)
.|||..
T Consensus 396 ~Grt~~ 401 (437)
T COG0621 396 IGRTEN 401 (437)
T ss_pred EEEcCC
Confidence 999863
No 3
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=9.5e-80 Score=634.02 Aligned_cols=387 Identities=27% Similarity=0.466 Sum_probs=331.5
Q ss_pred CCceEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHH---HhcCC--CCEEEE
Q 013195 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK---CKSAK--KPLVVA 131 (448)
Q Consensus 57 ~~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~---~~~~~--~~vVvg 131 (448)
++++|||+||||++|++|||.|++.|.+.||++++++++||+|+||||||+++|++++++.++. +++.+ .+||||
T Consensus 5 ~~~~~~i~tlGC~~N~~dse~~~~~l~~~G~~~~~~~~~ADviiiNTC~v~~~A~~k~~~~i~~~~~~k~~~~~~~ivv~ 84 (445)
T PRK14340 5 MGRKFYIHTFGCQMNQADSEIITALLQDEGYVPAASEEDADIVLLNTCAVRENAVERIGHYLQHLKGAKRRRKGLLVGVL 84 (445)
T ss_pred CCcEEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEeeeeeccHHHHHHHHHHHHHHHhhcCCCCEEEEe
Confidence 3467999999999999999999999999999999999999999999999999999999988764 44444 459999
Q ss_pred ccccccchh-h-hcCC-ccEEEcCCchhHHHHHHHHHhcCCceEeecccCCCCC-CCCcccCCCcEEEEEeCCCCCCCcc
Q 013195 132 GCVPQGSRD-L-KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACT 207 (448)
Q Consensus 132 Gc~a~~~~e-~-~~~~-~d~vvg~~~~~~i~~~l~~~~~g~~~~~~~~~~~~~~-~~p~~~~~~~~~~i~isrGC~~~Cs 207 (448)
||+||..++ + +.++ +|.|+|.+++..|++++.....+.....+...+.+.+ .+|..+.....++|++|||||++|+
T Consensus 85 GC~a~~~~~e~~~~~p~vd~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~isrGC~~~Cs 164 (445)
T PRK14340 85 GCVPQYEREEMFSMFPVIDFLAGPDTYRVLPGLIADAREGARPAALDFNQSETYAGIEPVRSGSISAFVPVMRGCNNMCA 164 (445)
T ss_pred CcccccchHHHHhhCCCCcEEECCCCHHHHHHHHHHHhcCCcceeccccccccccccccccCCCcEEEEEeccCCCCCCC
Confidence 999999986 4 3454 6899999999999999987655432222211111111 1222233456799999999999999
Q ss_pred ceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC-CCCHHHHHHHHHHhCCCCCcceEEEeecCCc
Q 013195 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (448)
Q Consensus 208 FC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~-~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~ 286 (448)
||++|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.|+.+. ..+|.+||+++.+. . +..++|+++.+|.
T Consensus 165 FC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~-~--~~~rir~~~~~p~ 241 (445)
T PRK14340 165 FCVVPFTRGRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRA-A--PEMRIRFTTSHPK 241 (445)
T ss_pred CCCcccccCCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhc-C--CCcEEEEccCChh
Confidence 999999999999999999999999999999999999999999998653 35689999999753 2 4569999999998
Q ss_pred ChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHH
Q 013195 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 366 (448)
Q Consensus 287 ~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~ 366 (448)
.+++++ +..+.+.+.+|+++|+|+||+|+++|+.|+|+++.+++.++++.+++.+||+.+.+|||+||||||+++|++
T Consensus 242 ~l~~el--l~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgET~edf~~ 319 (445)
T PRK14340 242 DISESL--VRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTDLIAGFCGETEEDHRA 319 (445)
T ss_pred hcCHHH--HHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEeccEEEECCCCCHHHHHH
Confidence 887655 444445556799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEeceeCCCCcccC-CC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEEEEEEecCC-ce
Q 013195 367 TVNLIKEYKFPQVHISQFYPRPGTPAAR-MK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADG-IH 441 (448)
Q Consensus 367 tl~~i~~l~~~~v~i~~~~p~pGT~~~~-~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vlve~~~~~~-~~ 441 (448)
|++|+++++++++++|.|+|+||||+++ |+ ++|++++++|+++|+++++. .++++.++|++++||||+.++++ ..
T Consensus 320 tl~~~~~~~~~~~~~f~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~l~~~~~~~~~~~~vG~~~~vlve~~~~~~~~~ 399 (445)
T PRK14340 320 TLSLMEEVRFDSAFMFYYSVRPGTLAARTLPDDVPEEVKKRRLQEIIDLQNGISAELFQRAVGSVVEVLAESESRRSSEQ 399 (445)
T ss_pred HHHHHHhcCCCEEeeEEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEecccCCCCe
Confidence 9999999999999999999999999995 87 89999999999999999985 67899999999999999765442 36
Q ss_pred EEEeeCC
Q 013195 442 LVRLEQF 448 (448)
Q Consensus 442 ~~g~~~~ 448 (448)
++|||++
T Consensus 400 ~~grt~~ 406 (445)
T PRK14340 400 LMGRTDG 406 (445)
T ss_pred EEEECCC
Confidence 7899974
No 4
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=3.8e-79 Score=629.68 Aligned_cols=385 Identities=25% Similarity=0.453 Sum_probs=331.2
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHH---hcC--CCCEEEEc
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC---KSA--KKPLVVAG 132 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~---~~~--~~~vVvgG 132 (448)
+++|||+||||+||++|||.|++.|.+.||++++++++||+|+||||||+.+|+++++..+..+ |+. +.+|||||
T Consensus 10 ~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADvviiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~ivv~G 89 (449)
T PRK14332 10 LGKVYIETYGCQMNEYDSGIVSSLMRDAEYSTSNDPENSDIIFLNTCAIRENAHAKIYNRLQSLGYLKKRNPNLVIGVLG 89 (449)
T ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEEccCeechHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 5689999999999999999999999999999999999999999999999999999988865543 443 45699999
Q ss_pred cccccchh-h-h-cCCccEEEcCCchhHHHHHHHHHhcCCceEeecc-cCCCCC-CCCcccCCCcEEEEEeCCCCCCCcc
Q 013195 133 CVPQGSRD-L-K-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPAL-DLPKVRRNKFVEILPINVGCLGACT 207 (448)
Q Consensus 133 c~a~~~~e-~-~-~~~~d~vvg~~~~~~i~~~l~~~~~g~~~~~~~~-~~~~~~-~~p~~~~~~~~~~i~isrGC~~~Cs 207 (448)
||||..|+ + . ..++|.|+|++++..++++++....|........ .....+ ++|........++|+||||||++|+
T Consensus 90 C~a~~~~e~l~~~~~~vD~vvg~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~l~isrGC~~~Cs 169 (449)
T PRK14332 90 CMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIRNGEKSISLTRLSKIETYDEIEPRVVNGIQAFVTIMRGCNNFCT 169 (449)
T ss_pred cccccchHHHhhccCCceEEECCCCHHHHHHHHHHHhcCCceeeecccccccccccccccccCCceEEEEecCCcCCCCC
Confidence 99999996 3 2 3467899999999999999988765532211110 001111 1232223346789999999999999
Q ss_pred ceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcC
Q 013195 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287 (448)
Q Consensus 208 FC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~ 287 (448)
||++|..+|++|+||+++|++|++.+.+.|+++|+|+|+|++.||.+. ..|.+||+++.+ .. +..|+|+.+.+|..
T Consensus 170 FC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~-~~l~~Ll~~l~~-~~--~~~~ir~~~~~p~~ 245 (449)
T PRK14332 170 FCVVPYTRGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQS-TDFAGLIQMLLD-ET--TIERIRFTSPHPKD 245 (449)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCc-ccHHHHHHHHhc-CC--CcceEEEECCCccc
Confidence 999999999999999999999999999999999999999999998753 469999998865 33 56799999999988
Q ss_pred hhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHH
Q 013195 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 367 (448)
Q Consensus 288 i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~t 367 (448)
+++++ +..+.+.+++|+++|+|+||+|+++|+.|+|+++.+++.++++.+++++|++.+.+|||+||||||++||++|
T Consensus 246 ~~~el--l~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~edf~~t 323 (449)
T PRK14332 246 FPDHL--LSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDT 323 (449)
T ss_pred CCHHH--HHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCHHHHHHH
Confidence 87765 4444456678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEeceeCCCCccc-CCC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEEEEEEecCC-ceE
Q 013195 368 VNLIKEYKFPQVHISQFYPRPGTPAA-RMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADG-IHL 442 (448)
Q Consensus 368 l~~i~~l~~~~v~i~~~~p~pGT~~~-~~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vlve~~~~~~-~~~ 442 (448)
++|+++++++++++|.|||+||||++ .|+ ++|++++++|+++|+++++. .+.+++++|++++||||+.++++ ..+
T Consensus 324 l~~v~~l~~~~~~~f~ys~~~GT~a~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~~~~~~~~ 403 (449)
T PRK14332 324 LAVVREVQFDMAFMFKYSEREGTMAKRKLPDNVPEEVKSARLTKLVDLQTSISHEQNRARIGRVYSILIENTSRKSEKQL 403 (449)
T ss_pred HHHHHhCCCCEEEEEEecCCCCChhHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEeccCCCCCeE
Confidence 99999999999999999999999999 687 89999999999999999985 68899999999999999876543 368
Q ss_pred EEeeCC
Q 013195 443 VRLEQF 448 (448)
Q Consensus 443 ~g~~~~ 448 (448)
+|||++
T Consensus 404 ~gr~~~ 409 (449)
T PRK14332 404 CGRTPC 409 (449)
T ss_pred EEECCC
Confidence 899974
No 5
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=5.8e-79 Score=632.66 Aligned_cols=387 Identities=31% Similarity=0.523 Sum_probs=334.9
Q ss_pred CCCCceEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHH---HHHhcCC--CCEE
Q 013195 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSAK--KPLV 129 (448)
Q Consensus 55 ~~~~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i---~~~~~~~--~~vV 129 (448)
++.++++||+||||+||++|||.|++.|.+.||+.++++++||+|+||||||+++|+++++..| +++++.+ .+|+
T Consensus 63 ~~~~~~~~i~T~GC~~N~~Dse~~~~~L~~~Gy~~~~~~~~ADviiiNTC~V~~~Ae~k~~~~i~~l~~~k~~~p~~~i~ 142 (509)
T PRK14327 63 MGNGRKFYIRTYGCQMNEHDTEVMAGIFEALGYEPTDDTEDADVILLNTCAIRENAENKVFGEIGHLKHLKRENPDLLIG 142 (509)
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHHCcCEECCCcCCCCEEEEECCCCccHHHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 4556789999999999999999999999999999999999999999999999999999999988 4555544 4699
Q ss_pred EEccccccch---hh-hcCC-ccEEEcCCchhHHHHHHHHHhcCCce--EeecccCCCCC-CCCcccCCCcEEEEEeCCC
Q 013195 130 VAGCVPQGSR---DL-KELE-GVSIVGVQQIDRVVEVVEETLKGHEV--RLLHRKKLPAL-DLPKVRRNKFVEILPINVG 201 (448)
Q Consensus 130 vgGc~a~~~~---e~-~~~~-~d~vvg~~~~~~i~~~l~~~~~g~~~--~~~~~~~~~~~-~~p~~~~~~~~~~i~isrG 201 (448)
|+||+||..+ ++ +.++ +|.|+|++++..++++|.....+... ...... ...+ ++|..+.....++|+|++|
T Consensus 143 v~GCmaq~~~~~~~~~~~~p~vd~v~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~a~v~I~~G 221 (509)
T PRK14327 143 VCGCMSQEESVVNKILKKYQHVDMIFGTHNIHRLPEILKEAYFSKEMVVEVWSKE-GDVIENLPKVREGNIKAWVNIMYG 221 (509)
T ss_pred EEcchhcCcCchHHHHhcCCCCCEEECCCCHHHHHHHHHHHhcCCCceeeccccc-cccccccccccCCCeEEEEEecCC
Confidence 9999999988 43 4565 68999999999999999876544321 111110 0111 2454445567899999999
Q ss_pred CCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC---CCHHHHHHHHHHhCCCCCcceE
Q 013195 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTML 278 (448)
Q Consensus 202 C~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~---~~l~~ll~~l~~~~~~~~~~~i 278 (448)
||++|+||++|..+|++|++++++|++|++.+.+.|+++|+|+|+|+++||.+.. ..|.+||+.|.+. +..|+
T Consensus 222 C~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~----~i~~i 297 (509)
T PRK14327 222 CDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKI----DIPRV 297 (509)
T ss_pred CCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhC----CCceE
Confidence 9999999999999999999999999999999999999999999999999997642 3578999999763 45689
Q ss_pred EEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCC
Q 013195 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358 (448)
Q Consensus 279 ri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~Pg 358 (448)
|+.+.+|..+++++ +..+.+.+++|+++|+|+||||+++|+.|+|+|+.+++.++++.+++++|++.+++|||+||||
T Consensus 298 r~~s~~P~~i~del--i~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~tdiIvGfPg 375 (509)
T PRK14327 298 RFTTSHPRDFDDHL--IEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALTTDIIVGFPN 375 (509)
T ss_pred EEeecCcccCCHHH--HHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEeeeEEEeCCC
Confidence 99988999888765 4444456667899999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEEEEEE
Q 013195 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEI 435 (448)
Q Consensus 359 ET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vlve~~ 435 (448)
||++||++|++|+++++++.+++|.|+|+||||++.|+ ++|.+++++|+++|.++++. .+.+++++|++++||||+.
T Consensus 376 ET~edf~~Tl~~v~~l~~d~~~~f~ysprpGT~a~~~~~~vp~~vk~~R~~~l~~l~~~~~~~~~~~~~G~~~~VLve~~ 455 (509)
T PRK14327 376 ETDEQFEETLSLYREVGFDHAYTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNEYSAKKMKRYEGQTVEVLVEGE 455 (509)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEeeeeCCCCCchHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEec
Confidence 99999999999999999999999999999999999998 99999999999999999985 5788999999999999987
Q ss_pred ecCC-ceEEEeeCC
Q 013195 436 AADG-IHLVRLEQF 448 (448)
Q Consensus 436 ~~~~-~~~~g~~~~ 448 (448)
++.+ ..+.|||+.
T Consensus 456 ~~~~~~~~~Grt~~ 469 (509)
T PRK14327 456 SKKNPEVLAGYTRK 469 (509)
T ss_pred ccCCCceEEEECCC
Confidence 6543 357899863
No 6
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=5.4e-78 Score=623.64 Aligned_cols=387 Identities=26% Similarity=0.480 Sum_probs=325.4
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHH---HHhc-CCCCEEEEcccc
Q 013195 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA---KCKS-AKKPLVVAGCVP 135 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~---~~~~-~~~~vVvgGc~a 135 (448)
+|||+||||++|++|||.|++.|.+.||++++++++||+|+||||||+++|+++++..+. ++|+ ++.+||||||||
T Consensus 2 ~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADv~iiNTC~v~~~A~~k~~~~~~~~~~~k~~~~~~ivv~GC~a 81 (455)
T PRK14335 2 TYFFETYGCQMNVAESASMEQLLLARGWTKAVDAETCDVLIINTCSVRITAETRVFGRLGLFSSLKKKRAFFIILMGCMA 81 (455)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceechHHHHHHHHHHHHHHhhhCCCcEEEEecccc
Confidence 899999999999999999999999999999999999999999999999999999877443 3332 245699999999
Q ss_pred ccchh-h-hcCC-ccEEEcCCchhHHHHHHHHHhcC---CceEe------ecccCCCCCCC-Cc-ccCCCcEEEEEeCCC
Q 013195 136 QGSRD-L-KELE-GVSIVGVQQIDRVVEVVEETLKG---HEVRL------LHRKKLPALDL-PK-VRRNKFVEILPINVG 201 (448)
Q Consensus 136 ~~~~e-~-~~~~-~d~vvg~~~~~~i~~~l~~~~~g---~~~~~------~~~~~~~~~~~-p~-~~~~~~~~~i~isrG 201 (448)
+..++ + +.++ +|.|+|++++..|++++.....+ ..... +...++|.+.+ |. .+.....++|+|+||
T Consensus 82 ~~~~~e~~~~~p~vd~v~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~I~rG 161 (455)
T PRK14335 82 ERLHDEIQKEFPRIDYVVGTFAHARLESIFQEIEAKLKQDDYRFEFISERYREHPVSGYRFFPSSYSEGSFQSFIPIMNG 161 (455)
T ss_pred cchHHHHHhhCCCCcEEECCCCHHHHHHHHHHHHhhcccccceecccccccccccccccccCcccccCCCceEEEEhhcC
Confidence 99996 4 4464 68999999999999998765321 11000 11112222221 21 123356799999999
Q ss_pred CCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC----CCCHHHHHHHHHHhCC-CCCcc
Q 013195 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELP-PDGST 276 (448)
Q Consensus 202 C~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~----~~~l~~ll~~l~~~~~-~~~~~ 276 (448)
||++|+||++|..+|+.|++|+++|++|++.+.+.|+++|+|+|+|++.||.+. ...+.+||++|.+... ..+..
T Consensus 162 C~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 241 (455)
T PRK14335 162 CNNFCSYCIVPYVRGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEVTDQIR 241 (455)
T ss_pred CCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHHHhhcccCCce
Confidence 999999999999999999999999999999999999999999999999996421 1368999999853211 01567
Q ss_pred eEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeC
Q 013195 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356 (448)
Q Consensus 277 ~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~ 356 (448)
|+|+.+++|..+++++ +..|.+.+.+|+++|+|+||+|+++|+.|||+++.+++.++++.+++.+||+.+.+|||+||
T Consensus 242 ~ir~~s~~p~~i~~el--l~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pgi~i~~d~IvGf 319 (455)
T PRK14335 242 WIRFMSSHPKDLSDDL--IATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPNVALSTDILIGF 319 (455)
T ss_pred EEEEeecCcccCCHHH--HHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeC
Confidence 9999999999888765 44444445679999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEEEE
Q 013195 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWIT 433 (448)
Q Consensus 357 PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vlve 433 (448)
||||+++|++|++|+++++++.+++|.|+|+||||+++|+ ++|.+++++|+++|+++++. .+++++++|++++||||
T Consensus 320 PgET~edf~~Tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~~~~~G~~~~vlve 399 (455)
T PRK14335 320 PGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYDFPDRIPDEVKIARLQRVIALQMSITLKKMKARVGKTLPVLVE 399 (455)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 9999999999999999999999999999999999999998 89999999999999999985 67899999999999999
Q ss_pred EEecCC-ceEEEeeCC
Q 013195 434 EIAADG-IHLVRLEQF 448 (448)
Q Consensus 434 ~~~~~~-~~~~g~~~~ 448 (448)
+.++++ ..++|||++
T Consensus 400 ~~~~~~~~~~~g~t~~ 415 (455)
T PRK14335 400 SRSRNNPEELFGHTEL 415 (455)
T ss_pred ccccCCCCeeEEECCC
Confidence 754432 367899874
No 7
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.3e-77 Score=622.26 Aligned_cols=388 Identities=28% Similarity=0.465 Sum_probs=330.7
Q ss_pred CCCCceEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHH---HHHhcC--CCCEE
Q 013195 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSA--KKPLV 129 (448)
Q Consensus 55 ~~~~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i---~~~~~~--~~~vV 129 (448)
.|++++|||+||||++|++|||.|++.|.+.||++++++++||+|+||||||+++|+++++..+ +++|+. +.+||
T Consensus 20 ~~~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~iv 99 (467)
T PRK14329 20 PKNTKKLFIESYGCQMNFADSEIVASILQMAGYNTTENLEEADLVLVNTCSIRDNAEQKVRKRLEKFNALKKKNPKLIVG 99 (467)
T ss_pred CCCCCEEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeCcceechHHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 4778899999999999999999999999999999999999999999999999999999999888 555554 45799
Q ss_pred EEccccccchh-h-hcCC-ccEEEcCCchhHHHHHHHHHhcCCceEeec---ccCCCCCCCCc-ccCCCcEEEEEeCCCC
Q 013195 130 VAGCVPQGSRD-L-KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLH---RKKLPALDLPK-VRRNKFVEILPINVGC 202 (448)
Q Consensus 130 vgGc~a~~~~e-~-~~~~-~d~vvg~~~~~~i~~~l~~~~~g~~~~~~~---~~~~~~~~~p~-~~~~~~~~~i~isrGC 202 (448)
||||||+..|+ + ...+ +|.|+|++++..|+++++....+....... ...+.+. .|. .......++|++||||
T Consensus 100 vgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~isrGC 178 (467)
T PRK14329 100 VLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVEEGRKAINVILSKEETYADI-SPVRLGGNGVSAFVSIMRGC 178 (467)
T ss_pred EECChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHHhcCCcceecccccccccccc-ccccccCCCcEEEEEeccCc
Confidence 99999999986 3 3455 789999999999999998766553221111 0111111 111 1123467899999999
Q ss_pred CCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC-------CCHHHHHHHHHHhCCCCCc
Q 013195 203 LGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-------VNLPILLNAIVAELPPDGS 275 (448)
Q Consensus 203 ~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~-------~~l~~ll~~l~~~~~~~~~ 275 (448)
|++|+||++|..+|++|++++++|++|++.+.+.|+++|+|+|+|++.||.+.. ..|.+||+.+.+.. +.
T Consensus 179 p~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~~~---~~ 255 (467)
T PRK14329 179 DNMCTFCVVPFTRGRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAEAV---PD 255 (467)
T ss_pred ccCCCCCccccccCCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHHHHHhcC---CC
Confidence 999999999999999999999999999999999999999999999999986532 36889999987643 34
Q ss_pred ceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEe
Q 013195 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355 (448)
Q Consensus 276 ~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG 355 (448)
.++|+++.+|..+++++ +..|.+.+.+|+++|||+||+|+++|+.|||+++.+++.++++.++++.|++.+.+|||+|
T Consensus 256 ~~ir~~~~~p~~l~~el--l~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~~~i~~d~IvG 333 (467)
T PRK14329 256 MRIRFSTSHPKDMTDDV--LEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPDCGISTDMIAG 333 (467)
T ss_pred cEEEEecCCcccCCHHH--HHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEeEEEe
Confidence 58999988998887654 4334444556999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccC-CC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEE
Q 013195 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIW 431 (448)
Q Consensus 356 ~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~-~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vl 431 (448)
|||||++||++|++|+++++++++++|.|+|+||||+++ |+ ++|.+++++|+++|+++++. .+++++++|++++||
T Consensus 334 fPgET~edf~~tl~~i~~l~~~~~~v~~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~~G~~~~vl 413 (467)
T PRK14329 334 FPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTYAARKLEDDVPEEVKKRRLNEIIALQQELSLERNQRDIGKTFEVL 413 (467)
T ss_pred CCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 999999999999999999999999999999999999995 87 89999999999999999984 678999999999999
Q ss_pred EEEEecCC-ceEEEeeCC
Q 013195 432 ITEIAADG-IHLVRLEQF 448 (448)
Q Consensus 432 ve~~~~~~-~~~~g~~~~ 448 (448)
||+.++++ ..+.|||++
T Consensus 414 ve~~~~~~~~~~~g~t~~ 431 (467)
T PRK14329 414 IEGVSKRSREQLFGRNSQ 431 (467)
T ss_pred EEecccCCCCeEEEECCC
Confidence 99764432 357899874
No 8
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2.2e-77 Score=617.24 Aligned_cols=381 Identities=32% Similarity=0.536 Sum_probs=330.4
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHH----hcCCCCEEEEcccc
Q 013195 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC----KSAKKPLVVAGCVP 135 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~----~~~~~~vVvgGc~a 135 (448)
+|||+||||++|++|||.|++.|.+.||+.++++++||+|+||||+|++.|+++++++++++ |+++++||||||||
T Consensus 2 ~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aDlvvinTC~v~~~a~~~~~~~i~~~~~~~r~~~~~vvv~Gc~a 81 (434)
T PRK14330 2 KFYIKTFGCQMNENDSETMAGLLKKEGFEPASNPEEADVVIINTCAVRRKSEEKAYSELGQLLKLKRKKNLIIGVAGCVA 81 (434)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEccceeehHHHHHHHHHHHHHHhcccCCCEEEEECccc
Confidence 79999999999999999999999999999999999999999999999999999999999999 66688999999999
Q ss_pred ccchh-hhcCCccEEEcCCchhHHHHHHHHHhcCCceEeecccCCCCC--CCCcccCCCcEEEEEeCCCCCCCccceeeC
Q 013195 136 QGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTK 212 (448)
Q Consensus 136 ~~~~e-~~~~~~d~vvg~~~~~~i~~~l~~~~~g~~~~~~~~~~~~~~--~~p~~~~~~~~~~i~isrGC~~~CsFC~~~ 212 (448)
+..|+ +....+|.|+|+.++..|+++|++...|... .+.....+.. ..|..+.....++|+++||||++|+||++|
T Consensus 82 ~~~~ee~~~~~~d~vvg~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~i~rGC~~~CsFC~ip 160 (434)
T PRK14330 82 EKEREKLLKRGADFVIGTRAVPKVTEAVKRALNGEKV-ALFEDKLDEITYELPRIRSSKHHAWVTIIYGCNRFCTYCIVP 160 (434)
T ss_pred cCchhhHHhcCCcEEEcCCCHHHHHHHHHHHhcCCce-EeecccccccccccccccCCCcEEEEEcccCCCCCCCCCceE
Confidence 99997 4444567899999999999999988766432 2211111111 112222234678999999999999999999
Q ss_pred ccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC--CCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhH
Q 013195 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290 (448)
Q Consensus 213 ~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~--~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~ 290 (448)
..+|++|+||+++|++|++.+.+.|+++|+|+|+|++.||.+. ...+.+||+.+.+ ++ +..++++.+.+|..+++
T Consensus 161 ~~~G~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~-~~--~~~~~~~~~~~p~~~~~ 237 (434)
T PRK14330 161 YTRGREKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASK-IE--GIERIWFLTSYPTDFSD 237 (434)
T ss_pred CcCCCCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHh-cC--CceEEEEecCChhhcCH
Confidence 9999999999999999999999999999999999999998764 2568899988865 44 56677887788887776
Q ss_pred HHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHH
Q 013195 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 370 (448)
Q Consensus 291 ~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~ 370 (448)
.+ +..+.+.+++|+++|+|+||+|+++|+.|+|+++.+++.++++.+++.+||+.+.+|||+||||||+++|++|++|
T Consensus 238 el--l~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~IvGfPgET~edf~~tl~f 315 (434)
T PRK14330 238 EL--IEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDASISSDIIVGFPTETEEDFMETVDL 315 (434)
T ss_pred HH--HHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHH
Confidence 54 3333445567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEeceeCCCCcccC-CC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEEEEEEecCCceEEEee
Q 013195 371 IKEYKFPQVHISQFYPRPGTPAAR-MK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLVRLE 446 (448)
Q Consensus 371 i~~l~~~~v~i~~~~p~pGT~~~~-~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vlve~~~~~~~~~~g~~ 446 (448)
+++++++++++|.|+|+||||+++ ++ ++|++++++|.++|+++++. .+++++++|++++||||+.++++ .+.|||
T Consensus 316 i~~~~~~~~~~~~~sp~pGT~~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~-~~~g~t 394 (434)
T PRK14330 316 VEKAQFERLNLAIYSPREGTVAWKYYKDDVPYEEKVRRMQYLLNLQKRINRKLNERYLGKTVEIIVEAKAKNG-LFYGRD 394 (434)
T ss_pred HHhcCCCEEeeeeccCCCCChhhhhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEccCCC-eEEEEC
Confidence 999999999999999999999999 67 89999999999999999995 67899999999999999764444 578998
Q ss_pred C
Q 013195 447 Q 447 (448)
Q Consensus 447 ~ 447 (448)
+
T Consensus 395 ~ 395 (434)
T PRK14330 395 I 395 (434)
T ss_pred C
Confidence 6
No 9
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.3e-76 Score=613.19 Aligned_cols=384 Identities=31% Similarity=0.556 Sum_probs=330.4
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHH---hcC--CCCEEEEc
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC---KSA--KKPLVVAG 132 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~---~~~--~~~vVvgG 132 (448)
.++|||+||||++|++|||.|.+.|.+.||++++++++||+|+||||||+++|+++++..++++ ++. +.+|||||
T Consensus 6 ~~~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADiiiiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vvv~G 85 (448)
T PRK14333 6 RRSYWITTFGCQMNKADSERMAGILEDMGYQWAEDELQADLVLYNTCTIRDNAEQKVYSYLGRQAKRKHKNPDLTLVVAG 85 (448)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEeeeeeehHHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 3699999999999999999999999999999999999999999999999999999998888765 333 45799999
Q ss_pred cccccchh-hh-cCC-ccEEEcCCchhHHHHHHHHHhcCCceEeecccCCCCC-CCCccc-CCCcEEEEEeCCCCCCCcc
Q 013195 133 CVPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVR-RNKFVEILPINVGCLGACT 207 (448)
Q Consensus 133 c~a~~~~e-~~-~~~-~d~vvg~~~~~~i~~~l~~~~~g~~~~~~~~~~~~~~-~~p~~~-~~~~~~~i~isrGC~~~Cs 207 (448)
|||+..|+ +. .++ +|.|+|++++..|++++++...|... +.....+.+ ++|.++ .....+||++++|||++|+
T Consensus 86 c~a~~~~~~~~~~~p~vD~v~g~~~~~~~~~ll~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~a~i~i~~GC~~~Cs 163 (448)
T PRK14333 86 CVAQQEGESLLRRVPELDLVMGPQHANRLEDLLEQVDAGNQV--VATEEIHILEDITKPRRDSSITAWVNVIYGCNERCT 163 (448)
T ss_pred ccCccCHHHHHhcCCCCCEEECCCCHHHHHHHHHHHhcCCce--eecccccccccccccccCCCeeEEEEhhcCCCCCCC
Confidence 99999997 43 454 68999999999999999887655421 111111111 223222 2235789999999999999
Q ss_pred ceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC---------CCHHHHHHHHHHhCCCCCcceE
Q 013195 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---------VNLPILLNAIVAELPPDGSTML 278 (448)
Q Consensus 208 FC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~---------~~l~~ll~~l~~~~~~~~~~~i 278 (448)
||++|..+|+.|++++++|++|++.+.+.|+++|+|+|+|++.||.+.. ..|.+||+++.+ ++ +..++
T Consensus 164 FC~ip~~rG~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~Ll~~i~~-~~--~~~ri 240 (448)
T PRK14333 164 YCVVPSVRGKEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDLLYYIHD-VE--GIERI 240 (448)
T ss_pred CCceecccCCCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHHHHHHHh-cC--CCeEE
Confidence 9999999999999999999999999999999999999999999987642 268999999976 44 66789
Q ss_pred EEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCC
Q 013195 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358 (448)
Q Consensus 279 ri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~Pg 358 (448)
|+++.+|..+++++ +..+.+.+.+|+++|||+||+|+++|+.|+|+++.+++.++++.+++++|++.+.+|||+||||
T Consensus 241 r~~~~~p~~~~~el--i~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p~i~i~~d~IvGfPg 318 (448)
T PRK14333 241 RFATSHPRYFTERL--IKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYMPDASISADAIVGFPG 318 (448)
T ss_pred EECCCChhhhhHHH--HHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEEeeEEEECCC
Confidence 99888998887665 4444445567999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEEEEEE
Q 013195 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEI 435 (448)
Q Consensus 359 ET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vlve~~ 435 (448)
||+++|++|++|+++++++.+++|.|+|+||||+++|+ ++|.+++++|.++|+++++. .+++++++|++++||||+.
T Consensus 319 ET~edf~~tl~~l~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~ 398 (448)
T PRK14333 319 ETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAALWDNQLSEEVKSDRLQRLNHLVEQKAAERSQRYLGRIEEVLVEGI 398 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEeeeeeecCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEec
Confidence 99999999999999999999999999999999999997 99999999999999999984 6789999999999999975
Q ss_pred ecC-CceEEEeeCC
Q 013195 436 AAD-GIHLVRLEQF 448 (448)
Q Consensus 436 ~~~-~~~~~g~~~~ 448 (448)
+.+ +.+++|||++
T Consensus 399 ~~~~~~~~~g~t~~ 412 (448)
T PRK14333 399 NPKDPSQVMGRTRT 412 (448)
T ss_pred ccCCCceEEEECCC
Confidence 433 2368899973
No 10
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.2e-76 Score=618.35 Aligned_cols=389 Identities=30% Similarity=0.527 Sum_probs=329.6
Q ss_pred CCCCCCceEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHH---HHHHHHhc--CCCC
Q 013195 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD---TLIAKCKS--AKKP 127 (448)
Q Consensus 53 ~~~~~~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~---~~i~~~~~--~~~~ 127 (448)
+-.|+.+++||+||||+||++|||.|++.|.+.||++++++++||+|+||||||+.+|+++++ ..++++|+ ++.+
T Consensus 8 ~~~~~~~~~~i~T~GC~~N~~dse~~~~~L~~~G~~~~~~~e~ADvvviNTCtv~~~A~~k~~~~i~~~~~~k~~~p~~~ 87 (502)
T PRK14326 8 AAARGARTYQVRTYGCQMNVHDSERLAGLLEAAGYVRAAEGQDADVVVFNTCAVRENADNRLYGNLGHLAPVKRANPGMQ 87 (502)
T ss_pred ccCCCCCEEEEEecCCCCcHHHHHHHHHHHHHCCCEECCCcCCCCEEEEECCCeeehHHHHHHHHHHHHHHHHHhCCCCE
Confidence 335666789999999999999999999999999999999999999999999999999999998 44455554 3568
Q ss_pred EEEEccccccchh-hh-cC-CccEEEcCCchhHHHHHHHHHhcCCceEeecc---cCCCCCCCCcccCCCcEEEEEeCCC
Q 013195 128 LVVAGCVPQGSRD-LK-EL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR---KKLPALDLPKVRRNKFVEILPINVG 201 (448)
Q Consensus 128 vVvgGc~a~~~~e-~~-~~-~~d~vvg~~~~~~i~~~l~~~~~g~~~~~~~~---~~~~~~~~p~~~~~~~~~~i~isrG 201 (448)
||||||||+..|+ +. .. .+|.|+|+.++..|++++.+...+........ ..+|. .+|..+...+.++|+||||
T Consensus 88 VvvgGc~a~~~~ee~~~~~p~VD~Vvg~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~p~-~~p~~~~~~~~a~v~isrG 166 (502)
T PRK14326 88 IAVGGCLAQKDRDTILKRAPWVDVVFGTHNIGSLPTLLERARHNKEAQVEIAESLEQFPS-TLPARRESAYAAWVSISVG 166 (502)
T ss_pred EEEECcccccCHHHHHhhCCCCeEEECCCCHHHHHHHHHHHhhCCCcccccccccccccc-ccccccCCCceEEEEEccC
Confidence 9999999999997 33 34 46889999999999999988765543211111 11121 1232223346789999999
Q ss_pred CCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC--CCHHHHHHHHHHhCCCCCcceEE
Q 013195 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLR 279 (448)
Q Consensus 202 C~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~--~~l~~ll~~l~~~~~~~~~~~ir 279 (448)
||++|+||++|..+|+.|+|++++|++|++.+.+.|+++|+|+|+|++.||.|.. ..|.+||+.+.. +. +..|+|
T Consensus 167 Cp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~-i~--~l~~ir 243 (502)
T PRK14326 167 CNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGE-ID--GLERVR 243 (502)
T ss_pred CCCCCccCceeccCCCcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHh-cC--CccEEE
Confidence 9999999999999999999999999999999999999999999999999998743 357888888865 34 567899
Q ss_pred EeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCC
Q 013195 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359 (448)
Q Consensus 280 i~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgE 359 (448)
+.+.+|..+++++ +..|.+.+++|+++|+|+||+|+++|+.|||+|+.+++.++++.+++++||+.+.+|||+|||||
T Consensus 244 ~~~~~p~~~~~el--l~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i~~~~IvGfPgE 321 (502)
T PRK14326 244 FTSPHPAEFTDDV--IEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAITTDIIVGFPGE 321 (502)
T ss_pred EeccChhhCCHHH--HHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEEEEEECCCC
Confidence 9988998887655 44444455578999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEEEEE-E
Q 013195 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITE-I 435 (448)
Q Consensus 360 T~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vlve~-~ 435 (448)
|++||++|++|+++++++.+++|.|+|+||||+++|+ ++|.+++++|+++|+++++. .+.++.++|++++||||+ .
T Consensus 322 T~edf~~Tl~~i~~~~~~~~~~f~~sp~pGT~~~~~~~~v~~~v~~~R~~~l~~~~~~~~~~~~~~~vg~~~~vLve~~~ 401 (502)
T PRK14326 322 TEEDFQATLDVVREARFSSAFTFQYSKRPGTPAAEMEGQLPKAVVQERYERLVALQERISLEENRKLVGRTVELLVATGE 401 (502)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeecCCCCChHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEecc
Confidence 9999999999999999999999999999999999998 99999999999999999984 678999999999999995 2
Q ss_pred ecCC---ceEEEeeC
Q 013195 436 AADG---IHLVRLEQ 447 (448)
Q Consensus 436 ~~~~---~~~~g~~~ 447 (448)
++++ ..+.|||+
T Consensus 402 ~~~~~~~~~~~g~~~ 416 (502)
T PRK14326 402 GRKDAATHRMSGRAR 416 (502)
T ss_pred cccCCcCceeEEECC
Confidence 2222 24679886
No 11
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2.3e-76 Score=610.45 Aligned_cols=383 Identities=28% Similarity=0.466 Sum_probs=326.1
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHH---hcC--CCCEEEEcc
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC---KSA--KKPLVVAGC 133 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~---~~~--~~~vVvgGc 133 (448)
++|||+||||++|++|||.|++.|.+.||++++. ++||+|+||||||++.|++++++.++++ ++. +.+||||||
T Consensus 4 ~~~~i~tlGC~~N~~dse~~~~~l~~~G~~~~~~-~~ADiiiiNTC~v~~~A~~~~~~~i~~~~~~k~~~p~~~ivv~GC 82 (446)
T PRK14337 4 RTFHIITFGCQMNVNDSDWLARALVARGFTEAPE-EEARVFIVNTCSVRDKPEQKVYSLLGRIRHATKKNPDVFVAVGGC 82 (446)
T ss_pred cEEEEEeeCCCCcHHHHHHHHHHHHHCCCEECCc-CCCCEEEEeccCeecHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 5799999999999999999999999999999885 7899999999999999999999886655 443 457999999
Q ss_pred ccccchh-h-hcCC-ccEEEcCCchhHHHHHHHHHhcCCceEee-cc--cCCCCCC-CCcccCCCcEEEEEeCCCCCCCc
Q 013195 134 VPQGSRD-L-KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLL-HR--KKLPALD-LPKVRRNKFVEILPINVGCLGAC 206 (448)
Q Consensus 134 ~a~~~~e-~-~~~~-~d~vvg~~~~~~i~~~l~~~~~g~~~~~~-~~--~~~~~~~-~p~~~~~~~~~~i~isrGC~~~C 206 (448)
+|+..++ + ..++ +|.|+|++++..++++++....+...... .. ..++... ++.....+..++|+++||||++|
T Consensus 83 ~a~~~~~~~~~~~p~vd~vv~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~i~rGC~~~C 162 (446)
T PRK14337 83 VAQQIGSGFFSRFPQVRLVFGTDGIAMAPQALERLAEEPDLRLSLLDFSEHYPEREALWGNGTVPASAFVNIMQGCDNFC 162 (446)
T ss_pred ccccccHHHHhhCCCCcEEECCCCHHHHHHHHHHHhcCCCceecccccccccccccccccccCCCcEEEEEeccCCCCCC
Confidence 9999876 3 3565 68999999999999998876533221111 00 1112211 12222345789999999999999
Q ss_pred cceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC---CCCHHHHHHHHHHhCCCCCcceEEEeec
Q 013195 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPDGSTMLRIGMT 283 (448)
Q Consensus 207 sFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~---~~~l~~ll~~l~~~~~~~~~~~iri~~~ 283 (448)
+||++|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.||.|. ...+.+|+++|.+ ++ +..++|+.+.
T Consensus 163 sFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~-~~--g~~~ir~~~~ 239 (446)
T PRK14337 163 AYCIVPYTRGRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAA-LP--GLERLRFTTP 239 (446)
T ss_pred cCCCcccCCCCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHh-cC--CCcEEEEccC
Confidence 9999999999999999999999999999999999999999999998764 2478999999976 44 5668999888
Q ss_pred CCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHH
Q 013195 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED 363 (448)
Q Consensus 284 ~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed 363 (448)
+|..+++++ +..+.+.+.+|+++|+|+||+|+++|+.|+|+|+.+++.++++.+++.+|++.+.+|||+||||||++|
T Consensus 240 ~p~~i~~el--l~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~i~~d~IvG~PgET~ed 317 (446)
T PRK14337 240 HPKDIAPEV--IEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIALTTDLIVGFPGETEED 317 (446)
T ss_pred CcccCCHHH--HHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEECCCCCHHH
Confidence 999888655 333444455689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEEEEEEecC--
Q 013195 364 FNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAAD-- 438 (448)
Q Consensus 364 ~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vlve~~~~~-- 438 (448)
|++|++|+++++++.+++|.|||+||||++.|+ ++|++++++|.++|+++++. .+++++++|++++||||+..++
T Consensus 318 ~~~tl~~l~~~~~~~~~~f~ysp~pgT~a~~~~~~v~~~vk~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~~~~~ 397 (446)
T PRK14337 318 FEQTLEAMRTVGFASSFSFCYSDRPGTRAEMLPGKVPEEVKSARLARLQELQNELTERWLQARVGRKTTVLLEGPSRKPG 397 (446)
T ss_pred HHHHHHHHHhcCCCeeEEEecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEeccccCC
Confidence 999999999999999999999999999999998 89999999999999999995 6789999999999999975322
Q ss_pred --CceEEEeeC
Q 013195 439 --GIHLVRLEQ 447 (448)
Q Consensus 439 --~~~~~g~~~ 447 (448)
+..+.|||.
T Consensus 398 ~~~~~~~g~~~ 408 (446)
T PRK14337 398 EGGDSWQGRDP 408 (446)
T ss_pred CCCceEEEECC
Confidence 125779885
No 12
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2.5e-76 Score=609.60 Aligned_cols=383 Identities=34% Similarity=0.591 Sum_probs=329.5
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHH---HHHhcC--CCCEEEEccc
Q 013195 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSA--KKPLVVAGCV 134 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i---~~~~~~--~~~vVvgGc~ 134 (448)
+|||+||||++|++||+.|++.|.+.||++++++++||+|+||||||+++|++++++.+ +++|+. +.+|||||||
T Consensus 2 ~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~aDviiiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~ivv~Gc~ 81 (437)
T PRK14331 2 KYYIKTFGCQMNFNDSEKIKGILQTLGYEPADDWEEADLILVNTCTIREKPDQKVLSHLGEYKKIKEKNPNALIGVCGCL 81 (437)
T ss_pred EEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeCcceecHHHHHHHHHHHHHHHHHHhCCCCEEEEEcch
Confidence 79999999999999999999999999999999999999999999999999999999888 566654 4579999999
Q ss_pred cccchh-h-hcCC-ccEEEcCCchhHHHHHHHHHhcCCc-eEeeccc--CCCCCC-CCcccCCCcEEEEEeCCCCCCCcc
Q 013195 135 PQGSRD-L-KELE-GVSIVGVQQIDRVVEVVEETLKGHE-VRLLHRK--KLPALD-LPKVRRNKFVEILPINVGCLGACT 207 (448)
Q Consensus 135 a~~~~e-~-~~~~-~d~vvg~~~~~~i~~~l~~~~~g~~-~~~~~~~--~~~~~~-~p~~~~~~~~~~i~isrGC~~~Cs 207 (448)
|+..|+ + ..++ +|.|+|++++..++++++....+.. ....... ..+.++ +|..+.....++++++||||++|+
T Consensus 82 a~~~~e~~~~~~p~vD~vv~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ld~~p~~~~~~~~a~v~i~rGC~~~Cs 161 (437)
T PRK14331 82 AQRAGYEIVQKAPFIDIVFGTFNIHHLPELLEQAKAGNKAIEILEEIDEDENKLDEYPTVRDNKYCAYVTVMRGCDKKCT 161 (437)
T ss_pred hcCChHHHHhcCCCCcEEECCCCHHHHHHHHHHHhcCCCceeeecccccccccccccccccCCCcEEEEEeccCcCCCCc
Confidence 999995 3 4555 6889999999999999987654422 1111110 111221 333333456799999999999999
Q ss_pred ceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC-CCHHHHHHHHHHhCCCCCcceEEEeecCCc
Q 013195 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (448)
Q Consensus 208 FC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~-~~l~~ll~~l~~~~~~~~~~~iri~~~~p~ 286 (448)
||.+|..+|++|++++++|++|++.+.+.|+++|+|+|+|++.||.+.. ..+.+||+++.+ .+ +..++++.+.+|.
T Consensus 162 FC~~p~~~g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~-~~--g~~~i~~~~~~p~ 238 (437)
T PRK14331 162 YCVVPKTRGKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAE-ID--GVERIRFTTGHPR 238 (437)
T ss_pred cCCcccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhc-CC--CccEEEEeccCcc
Confidence 9999999999999999999999999999999999999999999988753 578999999876 33 5568999888898
Q ss_pred ChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHH
Q 013195 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 366 (448)
Q Consensus 287 ~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~ 366 (448)
.+++++ +..+.+.+++|+++|+|+||+|+++|+.|+|+++.+++.++++.+++++||+.+.+|||+||||||++||++
T Consensus 239 ~l~~el--l~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d~IvG~PgET~ed~~~ 316 (437)
T PRK14331 239 DLDEDI--IKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTDIIVGFPTETEEDFEE 316 (437)
T ss_pred cCCHHH--HHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecCEEEECCCCCHHHHHH
Confidence 887655 444444455799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEEEEEEecCCceEE
Q 013195 367 TVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLV 443 (448)
Q Consensus 367 tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vlve~~~~~~~~~~ 443 (448)
|++|+++++++++++|.|+|+||||+++++ ++|++++++|.++|+++++. .+++++++|++++||||+..+++ .++
T Consensus 317 tl~~l~~l~~~~i~~f~~sp~pGT~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vlve~~~~~~-~~~ 395 (437)
T PRK14331 317 TLDVLKKVEFEQVFSFKYSPRPGTPAAYMEGQEPDEVKTKRMNRLLELQKEITFKKALSYEGTVQEVLVEEEKEGN-KLI 395 (437)
T ss_pred HHHHHHhcCcceeeeeEecCCCCcchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCC-cEE
Confidence 999999999999999999999999999998 89999999999999999985 67889999999999999763333 578
Q ss_pred EeeCC
Q 013195 444 RLEQF 448 (448)
Q Consensus 444 g~~~~ 448 (448)
|||+.
T Consensus 396 g~t~~ 400 (437)
T PRK14331 396 GRTRT 400 (437)
T ss_pred EECCC
Confidence 99873
No 13
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=100.00 E-value=6.3e-76 Score=603.29 Aligned_cols=381 Identities=48% Similarity=0.827 Sum_probs=330.3
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccccch
Q 013195 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSR 139 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~ 139 (448)
+++|+||||++|++|||+|++.|.+.||++++++++||+++||||||+..|++++++.++++++.+++|||||||||..|
T Consensus 1 ~~~~~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADviiinTC~v~~~a~~~~~~~i~~~~~~~~~vvv~GC~a~~~~ 80 (420)
T TIGR01578 1 KVYVETYGCTLNNGDSEIMKNSLAAYGHELVNNAEEADLAILNTCTVKNKTEDTMLYRIESLMRNGKHVVVAGCMPQAQK 80 (420)
T ss_pred CEEEEecCCCCcHHHHHHHHHHHHHCCCEECCCcccCCEEEEEeeeeeehHHHHHHHHHHHHHhcCCCEEEECCcCccCh
Confidence 58999999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred h-hhcC-CccEEEcCCchhHHHHHHHHHhcCCceEeecccCCCCCCCCcccCCCcEEEEEeCCCCCCCccceeeCccCCC
Q 013195 140 D-LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 217 (448)
Q Consensus 140 e-~~~~-~~d~vvg~~~~~~i~~~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~i~isrGC~~~CsFC~~~~~rg~ 217 (448)
+ +... +.+.++|+.++..+.+++.......... .. ......+.|..+.....++|++|||||++|+||.+|..+|+
T Consensus 81 e~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~i~isrGC~~~CsfC~ip~~~G~ 158 (420)
T TIGR01578 81 ESVYDNGSVASVLGVQAIDRLVEVVEETLKKKVHG-RR-EAGTPLSLPKPRKNPLIEIIPINQGCLGNCSYCITKHARGK 158 (420)
T ss_pred HHHHhhCCccEEEcCCCHHHHHHHHHHHhcCCccc-cc-ccccccccccccCCCcEEEEEEccCCCCCCCCCccccCCCC
Confidence 7 4333 4567889999999999887654321110 00 00111122333345678999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (448)
+|++|+++|++|++.+.+.|+++|+|+|+|++.||.|.+..+.+|++.+.+ ++ +..++|+++++|..+....+++.+
T Consensus 159 ~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~~-i~--~~~~ir~~~~~p~~~~~~~~~l~~ 235 (420)
T TIGR01578 159 LASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLITE-IP--GEFRLRVGMMNPKNVLEILDELAN 235 (420)
T ss_pred cccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHHh-CC--CCcEEEEcCCCCCcccccCHHHHH
Confidence 999999999999999999999999999999999998866679999988865 44 567899998899765444455666
Q ss_pred HHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCC
Q 013195 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (448)
Q Consensus 298 l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~ 377 (448)
++..+++|+++|+|+||+|+++|+.|+|+++.+++.++++.+++.+||+.+.+|||+||||||+++|++|++|+++++++
T Consensus 236 ~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i~i~~~~IvG~PgET~ed~~~t~~~~~~~~~~ 315 (420)
T TIGR01578 236 VYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLSTDIIVGFPTETDDDFEETMELLRKYRPE 315 (420)
T ss_pred HHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEeeEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence 66667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEEEEEEecCCceEEEee
Q 013195 378 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLVRLE 446 (448)
Q Consensus 378 ~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vlve~~~~~~~~~~g~~ 446 (448)
.+++++|+|+||||+++++++|.+++++|.++|+++++. .+++++++|++++||||+.+.++ .+.|++
T Consensus 316 ~i~~~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~-~~~~~~ 385 (420)
T TIGR01578 316 KINITKFSPRPGTPAAKMKRIPTNIVKKRSKRLTKLYEQVLLEMRDNLIGTRVHVLVTKEGKGD-SLDDED 385 (420)
T ss_pred EEEEEEeeCCCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEecCCCC-eeeeCC
Confidence 999999999999999999999999999999999999995 57889999999999999754333 455654
No 14
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.4e-75 Score=605.71 Aligned_cols=386 Identities=32% Similarity=0.522 Sum_probs=328.1
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHH---hc--CCCCEEEEc
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC---KS--AKKPLVVAG 132 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~---~~--~~~~vVvgG 132 (448)
|+||+|+||||++|++||+.|++.|.+.||+++++.++||+|+||||||++.+++++++.++++ |+ ++.+|||||
T Consensus 3 ~~~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aDvviinTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vvvgG 82 (444)
T PRK14325 3 MKKLYIKTYGCQMNEYDSSKMADLLGAEGYELTDDPEEADLILLNTCSIREKAQEKVFSELGRWRKLKEKNPDLIIGVGG 82 (444)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcCCCCEEEEEcceeeehHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 5689999999999999999999999999999999999999999999999999999988775544 54 357899999
Q ss_pred cccccchh-hh-cC-CccEEEcCCchhHHHHHHHHHh-cCCceEeecccCCCCCC-CCcccCCCcEEEEEeCCCCCCCcc
Q 013195 133 CVPQGSRD-LK-EL-EGVSIVGVQQIDRVVEVVEETL-KGHEVRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACT 207 (448)
Q Consensus 133 c~a~~~~e-~~-~~-~~d~vvg~~~~~~i~~~l~~~~-~g~~~~~~~~~~~~~~~-~p~~~~~~~~~~i~isrGC~~~Cs 207 (448)
|||+..|+ +. .+ .+|.|+|++++..|++++++.. .|...........+.++ +|.++.....++++++||||++|+
T Consensus 83 c~as~~~ee~~~~~~~vD~vv~~e~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~d~~p~~~~~~~~~~i~isrGCp~~Cs 162 (444)
T PRK14325 83 CVAQQEGEEILKRAPYVDIVFGPQTLHRLPEMIARARRGGKPVVDISFPEIEKFDHLPEPRAEGPSAFVSIMEGCDKYCT 162 (444)
T ss_pred chhccCHHHHHhhCCCCcEEECCCCHHHHHHHHHHHHhcCCceeeecccccccccccccccCCCceEEEEhhhCCCCCCC
Confidence 99999997 33 35 4689999999999999998764 34322111111112222 333333456789999999999999
Q ss_pred ceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCC-CC---CCCHHHHHHHHHHhCCCCCcceEEEeec
Q 013195 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DI---GVNLPILLNAIVAELPPDGSTMLRIGMT 283 (448)
Q Consensus 208 FC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~-d~---~~~l~~ll~~l~~~~~~~~~~~iri~~~ 283 (448)
||++|..+|+.++||+++|++|++.+.+.|+++|+|+|+|++.|+. +. ...+.+|+++|.+ ++ +..++|+++.
T Consensus 163 FC~~p~~~G~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~ 239 (444)
T PRK14325 163 FCVVPYTRGEEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVAA-ID--GIERIRYTTS 239 (444)
T ss_pred ccccCcccCCcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHHh-cC--CccEEEEccC
Confidence 9999999999999999999999999999999999999999999943 21 2368999999875 44 5568999888
Q ss_pred CCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHH
Q 013195 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED 363 (448)
Q Consensus 284 ~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed 363 (448)
+|..+++++ +..+.+.+.+|+++++|+||+|+++|+.|+|+++.+++.++++.++++.||+.+.+|||+||||||+++
T Consensus 240 ~p~~~~~el--l~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~~~~IvG~PgET~ed 317 (444)
T PRK14325 240 HPRDFTDDL--IEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDIAISSDFIVGFPGETDED 317 (444)
T ss_pred CcccCCHHH--HHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHH
Confidence 898887655 444444555799999999999999999999999999999999999999899999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEEEEEEecCCc
Q 013195 364 FNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGI 440 (448)
Q Consensus 364 ~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vlve~~~~~~~ 440 (448)
|++|++|+++++++.+++|.|+|+||||+++|+ ++|++++++|+++|+++++. .+++++++|++++||||+..+++.
T Consensus 318 ~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vlve~~~~~~~ 397 (444)
T PRK14325 318 FEATMKLIEDVGFDQSFSFIYSPRPGTPAADLPDDVPEEVKKERLQRLQALINQQQMAFSRSMVGTVQRVLVEGPSRKDG 397 (444)
T ss_pred HHHHHHHHHhcCCCeeeeeeccCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEEeecCCC
Confidence 999999999999999999999999999999998 99999999999999999984 678899999999999997654423
Q ss_pred eEEEeeCC
Q 013195 441 HLVRLEQF 448 (448)
Q Consensus 441 ~~~g~~~~ 448 (448)
.+.|||++
T Consensus 398 ~~~g~t~~ 405 (444)
T PRK14325 398 QLIGRTEN 405 (444)
T ss_pred eEEEECCC
Confidence 67899864
No 15
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=3.2e-75 Score=596.85 Aligned_cols=364 Identities=28% Similarity=0.482 Sum_probs=317.3
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHH---HHHHhcC--CCCEEEEc
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL---IAKCKSA--KKPLVVAG 132 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~---i~~~~~~--~~~vVvgG 132 (448)
|.++||+||||++|++|||.|++.|.+.||++++++++||+|+||||+|+++|++++++. ++++++. +++|||||
T Consensus 1 ~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~AD~viiNTC~v~~~a~~~~~~~i~~~~~~~~~~~~~~ivv~G 80 (418)
T PRK14336 1 MPGYYLWTIGCQMNQAESERLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVINRLHLLRKLKNKNPKLKIALTG 80 (418)
T ss_pred CCeEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEecccEecHHHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 468999999999999999999999999999999999999999999999999999999844 4455544 45799999
Q ss_pred cccccchh-hh-cCC-ccEEEcCCchhHHHHHHHHHhcCCceEeecccCCCCCCCCcccCCCcEEEEEeCCCCCCCccce
Q 013195 133 CVPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 209 (448)
Q Consensus 133 c~a~~~~e-~~-~~~-~d~vvg~~~~~~i~~~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~i~isrGC~~~CsFC 209 (448)
|+|+..++ +. .++ +|.|+|+++...+.+.+... .+|. ..+..++|+++||||++|+||
T Consensus 81 C~~~~~~~~l~~~~p~vd~v~g~~~~~~~~~~~~~~-----------------~~~~--~~~~~a~i~i~rGC~~~CsFC 141 (418)
T PRK14336 81 CLVGQDISLIRKKFPFVDYIFGPGSMPDWREIPEGF-----------------ILPL--KPPVSANVTIMQGCDNFCTYC 141 (418)
T ss_pred ChhcCCHHHHHhhCCCCcEEECCCCHHHHHHHHhhh-----------------ccCC--CCCeEEEEEeccCCCCCCccC
Confidence 99999986 44 565 67899999876666555311 0111 234678999999999999999
Q ss_pred eeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC--CCHHHHHHHHHHhCCCCCcceEEEeecCCcC
Q 013195 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287 (448)
Q Consensus 210 ~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~--~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~ 287 (448)
++|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..|.+||+++.+ ++ +..++|+.+.+|..
T Consensus 142 ~ip~~rG~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~~p~~ 218 (418)
T PRK14336 142 VVPYRRGREKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHD-IP--GLLRIRFLTSHPKD 218 (418)
T ss_pred CccccCCCCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHh-cC--CccEEEEeccChhh
Confidence 99999999999999999999999999999999999999999998753 469999999975 44 56789999889988
Q ss_pred hhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHH
Q 013195 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 367 (448)
Q Consensus 288 i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~t 367 (448)
+++++ +..+.+.+.+|+++|+|+||+|+++|+.|+|+++.+++.++++.+++++||+.+.+|||+||||||+++|++|
T Consensus 219 i~~el--l~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~edf~~t 296 (418)
T PRK14336 219 ISQKL--IDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQTDLIVGFPSETEEQFNQS 296 (418)
T ss_pred cCHHH--HHHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEECCCCCHHHHHHH
Confidence 87655 3334444567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEeceeCCCCccc-CCC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEEEEEEecCCceEE
Q 013195 368 VNLIKEYKFPQVHISQFYPRPGTPAA-RMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLV 443 (448)
Q Consensus 368 l~~i~~l~~~~v~i~~~~p~pGT~~~-~~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vlve~~~~~~~~~~ 443 (448)
++|+++++++.+++|.|+|+||||++ .|+ ++|++++++|+++|+++++. .++++.++|++.+||||+.+ ++ .+.
T Consensus 297 l~fi~~~~~~~~~v~~ysp~pGT~a~~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~-~~-~~~ 374 (418)
T PRK14336 297 YKLMADIGYDAIHVAAYSPRPQTVAARDMADDVPVIEKKRRLKLIEDLQKETVGKANAALMDTFAEVLVEGLQ-KN-KWQ 374 (418)
T ss_pred HHHHHhcCCCEEEeeecCCCCCChhHhhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEcC-CC-eEE
Confidence 99999999999999999999999999 487 89999999999999999995 57889999999999999742 22 467
Q ss_pred EeeC
Q 013195 444 RLEQ 447 (448)
Q Consensus 444 g~~~ 447 (448)
|||.
T Consensus 375 g~~~ 378 (418)
T PRK14336 375 GRTL 378 (418)
T ss_pred EECC
Confidence 9875
No 16
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=100.00 E-value=9.4e-75 Score=597.99 Aligned_cols=384 Identities=29% Similarity=0.504 Sum_probs=328.7
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhC-CCeeecCCCCCcEEEEeecccccchHHHHHHHH---HHHhcC--CCCEEEEcc
Q 013195 60 TIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSA--KKPLVVAGC 133 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~~L~~~-G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i---~~~~~~--~~~vVvgGc 133 (448)
+|+|+||||++|++|||.|++.|.+. ||++++++++||+++||||||+++|++++++.+ +++++. +++||||||
T Consensus 1 ~~~i~t~GC~~N~~dse~~~~~l~~~~G~~~~~~~~~aDv~iiNTC~v~~~a~~k~~~~i~~~~~~k~~~~~~~ivv~GC 80 (438)
T TIGR01574 1 KLFIQTYGCQMNVRDSEHMAALLTAKEGYALTEDAKEADVLLINTCSVREKAEHKVFGELGGFKKLKKKNPDLIIGVCGC 80 (438)
T ss_pred CeEEEeCCCCCcHHHHHHHHHHHHhcCCcEECCCcccCCEEEEeccCeechHHHHHHHHHHHHHHHHhhCCCcEEEEeCc
Confidence 58999999999999999999999999 999999999999999999999999999999988 555554 457999999
Q ss_pred ccccchh-hh-cCC-ccEEEcCCchhHHHHHHHHHhcCCc-eEeecccCCCCC-CCCcccC-CCcEEEEEeCCCCCCCcc
Q 013195 134 VPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGHE-VRLLHRKKLPAL-DLPKVRR-NKFVEILPINVGCLGACT 207 (448)
Q Consensus 134 ~a~~~~e-~~-~~~-~d~vvg~~~~~~i~~~l~~~~~g~~-~~~~~~~~~~~~-~~p~~~~-~~~~~~i~isrGC~~~Cs 207 (448)
|||..|+ +. .++ +|.|+|++++..+++++.....+.. .........+.. .+|.... ....++|+++||||++|+
T Consensus 81 ~a~~~~~~~~~~~~~vd~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~rGC~~~Cs 160 (438)
T TIGR01574 81 MASHLGNEIFQRAPYVDFVFGTRNIHRLPQAIKTPLTQKFMVVDIDSDESEVAGYFADFRNEGIYKSFINIMIGCNKFCT 160 (438)
T ss_pred cccccHHHHHhcCCCCcEEECCCCHHHHHHHHHHHhcCCCceeeeccccccccccccccccCCceeEEeehhcCCCCCCC
Confidence 9999987 43 344 6889999999999999987654332 111111111111 1233222 346789999999999999
Q ss_pred ceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCC-CCCCC---CCHHHHHHHHHHhCCCCCcceEEEeec
Q 013195 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIG---VNLPILLNAIVAELPPDGSTMLRIGMT 283 (448)
Q Consensus 208 FC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~y-g~d~~---~~l~~ll~~l~~~~~~~~~~~iri~~~ 283 (448)
||++|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.| |.+.. ..|.+||++|.+ .+ +..|+|+.++
T Consensus 161 fC~~~~~~G~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~ 237 (438)
T TIGR01574 161 YCIVPYTRGDEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELST-ID--GIERIRFTSS 237 (438)
T ss_pred CCCeeeecCCCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHHh-cC--CceEEEEecC
Confidence 99999999999999999999999999999999999999999999 77642 368999999975 33 5679999989
Q ss_pred CCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHH
Q 013195 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED 363 (448)
Q Consensus 284 ~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed 363 (448)
+|..+++.+ +..+.+.+.+|+++|+|+||+|+++|+.|+|+++.+++.++++.+++++|++.+.+|||+||||||+++
T Consensus 238 ~p~~l~~el--l~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i~i~~d~IvG~PgEt~ed 315 (438)
T TIGR01574 238 HPLDFDDDL--IEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNVSISTDIIVGFPGETEED 315 (438)
T ss_pred CcccCCHHH--HHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEeeCEEEeCCCCCHHH
Confidence 998887765 444445556799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEEEEEEecCCc
Q 013195 364 FNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGI 440 (448)
Q Consensus 364 ~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vlve~~~~~~~ 440 (448)
|++|++|+.+++++++++|.|+|+||||+++++ ++|++++++|+++|+++++. .+++++++|++++||||+...++.
T Consensus 316 ~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~~ 395 (438)
T TIGR01574 316 FEETLDLLREVEFDSAFSFIYSPRPGTPAADMPDQIPEEIKKRRLQRLQARHNEILDKKMRKQEGKTFKVLVEGLSRNNP 395 (438)
T ss_pred HHHHHHHHHhcCCCeeeeEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEeccCCCC
Confidence 999999999999999999999999999999998 89999999999999999985 578899999999999997543432
Q ss_pred -eEEEeeCC
Q 013195 441 -HLVRLEQF 448 (448)
Q Consensus 441 -~~~g~~~~ 448 (448)
.+.|||+.
T Consensus 396 ~~~~g~t~~ 404 (438)
T TIGR01574 396 EELAGRTEN 404 (438)
T ss_pred ceEEEECCC
Confidence 57899864
No 17
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=9.8e-75 Score=598.01 Aligned_cols=384 Identities=30% Similarity=0.525 Sum_probs=327.0
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHH---HHHHHHhcCC--CCEEEEcc
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD---TLIAKCKSAK--KPLVVAGC 133 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~---~~i~~~~~~~--~~vVvgGc 133 (448)
++|+|+||||++|++|||.|++.|.+.||++++++++||+|+||||||+++|+++++ ..++++++.+ .+||||||
T Consensus 2 ~~~~~~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~~~vvv~GC 81 (439)
T PRK14328 2 KKYFIETYGCQMNEEDSEKLAGMLKSMGYERTENREEADIIIFNTCCVRENAENKVFGNLGELKKLKEKNPNLIIGVCGC 81 (439)
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHHHCcCEECCCcCcCCEEEEecccEechHHHHHHHHHHHHHHHHhhCCCCEEEEECc
Confidence 579999999999999999999999999999999999999999999999999999988 4455555543 56999999
Q ss_pred cccc--chh-hh-cCC-ccEEEcCCchhHHHHHHHHHhcCC-ceEeecccCCCCC-CCCcccCCCcEEEEEeCCCCCCCc
Q 013195 134 VPQG--SRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGH-EVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGAC 206 (448)
Q Consensus 134 ~a~~--~~e-~~-~~~-~d~vvg~~~~~~i~~~l~~~~~g~-~~~~~~~~~~~~~-~~p~~~~~~~~~~i~isrGC~~~C 206 (448)
|||. .++ +. .++ +|.|+|++++..++++|.....+. ..........+.+ .+|..+.....++|+|+||||++|
T Consensus 82 ~a~~~~~~~~~~~~~~~vd~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~rGC~~~C 161 (439)
T PRK14328 82 MMQQKGMAEKIKKKFPFVDIIFGTHNIHKFPEYLNRVKEEGKSVIEIWEKEDGIVEGLPIDRKSKVKAFVTIMYGCNNFC 161 (439)
T ss_pred hhcccccHHHHHhhCCCceEEECCCCHHHHHHHHHHHhcCCCceeeecccccccccccccccCCCcEEEEEHHhCcCCCC
Confidence 9999 666 43 564 678999999999999998765432 2211111111111 223222345678999999999999
Q ss_pred cceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC--CCHHHHHHHHHHhCCCCCcceEEEeecC
Q 013195 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTN 284 (448)
Q Consensus 207 sFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~--~~l~~ll~~l~~~~~~~~~~~iri~~~~ 284 (448)
+||++|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..+.+|++.+.+ ++ +..++|+.+.+
T Consensus 162 sfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~~ 238 (439)
T PRK14328 162 TYCIVPYVRGRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNE-ID--GLERIRFMTSH 238 (439)
T ss_pred CCCCcccccCCcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHh-cC--CCcEEEEecCC
Confidence 99999999999999999999999999999999999999999999997643 468999999875 44 66789998889
Q ss_pred CcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHH
Q 013195 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDF 364 (448)
Q Consensus 285 p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~ 364 (448)
|..+++++ +..+.+.+.+|+++|+|+||+|+++|+.|+|+++.+++.++++.+++.+|++.+.+|||+||||||++||
T Consensus 239 P~~i~~el--l~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~IvG~PgET~ed~ 316 (439)
T PRK14328 239 PKDLSDDL--IEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDVAITTDIIVGFPGETEEDF 316 (439)
T ss_pred hhhcCHHH--HHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHH
Confidence 98887665 4444455557999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEEEEEEecCC-c
Q 013195 365 NQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADG-I 440 (448)
Q Consensus 365 ~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vlve~~~~~~-~ 440 (448)
++|++|+++++++.+++|.|+|+||||+++++ ++|.+++++|+++|+++++. .++++.++|++++||||+...++ .
T Consensus 317 ~~tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vl~e~~~~~~~~ 396 (439)
T PRK14328 317 EETLDLVKEVRYDSAFTFIYSKRKGTPAAKMEDQVPEDVKHERFNRLVELQNKISLEKNKEYEGKIVEVLVEGPSKNDEN 396 (439)
T ss_pred HHHHHHHHhcCCCcccceEecCCCCChhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEecccCCCc
Confidence 99999999999999999999999999999997 89999999999999999985 57889999999999999764332 3
Q ss_pred eEEEeeC
Q 013195 441 HLVRLEQ 447 (448)
Q Consensus 441 ~~~g~~~ 447 (448)
++.|||+
T Consensus 397 ~~~g~~~ 403 (439)
T PRK14328 397 KLTGRTR 403 (439)
T ss_pred eEEEECC
Confidence 6789986
No 18
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=100.00 E-value=9.4e-75 Score=595.15 Aligned_cols=378 Identities=32% Similarity=0.570 Sum_probs=325.7
Q ss_pred EEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCC--CCEEEEccccccchh
Q 013195 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCVPQGSRD 140 (448)
Q Consensus 63 ~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~--~~vVvgGc~a~~~~e 140 (448)
|+||||++|++|||.|++.|.+.||+.++++++||+|+||||||+..++++++++++++|+.+ .+||||||||+..|+
T Consensus 1 ~~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a~~~~e 80 (414)
T TIGR01579 1 IETLGCRVNQYESESLKNQLIQKGYEVVPDEDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYAQSNPK 80 (414)
T ss_pred CEeeCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCccccCHH
Confidence 589999999999999999999999999999999999999999999999999999999998776 579999999999997
Q ss_pred -hhcCC-ccEEEcCCchhHHHHHHHHHhcCCceEee-----cccCCCCCCCCcccCCCcEEEEEeCCCCCCCccceeeCc
Q 013195 141 -LKELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLL-----HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKH 213 (448)
Q Consensus 141 -~~~~~-~d~vvg~~~~~~i~~~l~~~~~g~~~~~~-----~~~~~~~~~~p~~~~~~~~~~i~isrGC~~~CsFC~~~~ 213 (448)
+...+ +|.|+|++++..|+++++....+...... ....+|.+++... .....++|++|||||++|+||.+|.
T Consensus 81 e~~~~~~vD~vv~~e~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~i~isrGCp~~CsfC~~~~ 159 (414)
T TIGR01579 81 ELADLKDVDLVLGNKEKDKINKLLSLGLKTSFYRVKNKNFSREKGVPEYEEVAF-EGHTRAFIKVQDGCNFFCSYCIIPF 159 (414)
T ss_pred HHhcCCCCcEEECCCCHHHHHHHHHHHhcccCcccccccccccccccccccccc-CCCeEEEEEeccCcCCCCCCCceee
Confidence 44554 67899999999999999765433211111 1111222221111 2245789999999999999999999
Q ss_pred cCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC--CCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHH
Q 013195 214 ARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291 (448)
Q Consensus 214 ~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~--~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~ 291 (448)
.+|++|++|+++|++|++.+.+.|+++|+|+|+|++.|+.|. ...+.+|++++.+ ++ +..|+|+++++|..++++
T Consensus 160 ~~g~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~~p~~~~~e 236 (414)
T TIGR01579 160 ARGRSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQ-IP--GIKRIRLSSIDPEDIDEE 236 (414)
T ss_pred ecCCCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhc-CC--CCcEEEEeCCChhhCCHH
Confidence 999999999999999999999999999999999999998764 3578999999975 44 567899998999887765
Q ss_pred HHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHH
Q 013195 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 371 (448)
Q Consensus 292 l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i 371 (448)
+ +..|.+.+++|+++++|+||+|+++|+.|+|+++.+++.++++.+++.+||+.+.++||+||||||+++|++|++|+
T Consensus 237 l--l~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl~~i 314 (414)
T TIGR01579 237 L--LEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETLRMV 314 (414)
T ss_pred H--HHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHHHHH
Confidence 4 33333455679999999999999999999999999999999999999777999999999999999999999999999
Q ss_pred HhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEEEEEEecCCceEEEeeCC
Q 013195 372 KEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLVRLEQF 448 (448)
Q Consensus 372 ~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vlve~~~~~~~~~~g~~~~ 448 (448)
++++++++++|+|+|+||||+++++ ++|..++++|+++|+++++. .++++.++|++++||||+.+ ++ ++.|||++
T Consensus 315 ~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vlve~~~-~~-~~~g~~~~ 392 (414)
T TIGR01579 315 KEIEFSHLHIFPYSARPGTPASTMKDKVPETIKKERVKRLKELAEKNYQEFLKKNIGKELEVLVEKEK-AG-VLTGYSEY 392 (414)
T ss_pred HhCCCCEEEeeecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCC-CC-eeEEECCC
Confidence 9999999999999999999999998 99999999999999999985 67899999999999999752 33 57899874
No 19
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=100.00 E-value=1.3e-74 Score=596.58 Aligned_cols=381 Identities=35% Similarity=0.610 Sum_probs=329.6
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCC---CEEEEccccc
Q 013195 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK---PLVVAGCVPQ 136 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~---~vVvgGc~a~ 136 (448)
+|||+||||++|++||+.|.+.|.+.||++++++++||+|+||||||+..++++++++++++++.++ +||||||||+
T Consensus 1 ~~~~~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intC~v~~~a~~~~~~~i~~~~~~~~~~~~vvvgGc~a~ 80 (429)
T TIGR00089 1 KVYIETYGCQMNEADSEIMAGLLKEAGYEVTDDPEEADVIIINTCAVREKAEQKVRSRLGELAKLKKKNAKIVVAGCLAQ 80 (429)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEecceeechHHHHHHHHHHHHHHhCcCCCEEEEECcccc
Confidence 5899999999999999999999999999999999999999999999999999999999999987776 8999999999
Q ss_pred cchhh--hcC-CccEEEcCCchhHHHHHHHHHhcCCceEeecccCCCCC-CCCccc-CCCcEEEEEeCCCCCCCccceee
Q 013195 137 GSRDL--KEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVR-RNKFVEILPINVGCLGACTYCKT 211 (448)
Q Consensus 137 ~~~e~--~~~-~~d~vvg~~~~~~i~~~l~~~~~g~~~~~~~~~~~~~~-~~p~~~-~~~~~~~i~isrGC~~~CsFC~~ 211 (448)
..|+. ..+ ++|.|+|++++..|++++++.. +....++.. ..+++ .+|.++ .....++|++|||||++|+||.+
T Consensus 81 ~~~ee~~~~~~~vd~vvg~~~~~~~~~~l~~~~-~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~i~~srGC~~~CsfC~~ 158 (429)
T TIGR00089 81 REGEELLKRIPEVDIVLGPQNKERIPEAIESAE-QEKQVVFNI-SKDVYEELPRPRSFGKTRAFLKIQEGCDKFCTYCIV 158 (429)
T ss_pred cCHHHHHhhCCCCCEEECCCCHHHHHHHHHHHh-cCCceeccc-cccchhcccccccCCCeEEEEEHHhCcCCCCCcCce
Confidence 99973 344 4789999999999999998865 322222211 11111 233332 23467899999999999999999
Q ss_pred CccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC--CCHHHHHHHHHHhCCCCCcceEEEeecCCcChh
Q 013195 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289 (448)
Q Consensus 212 ~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~--~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~ 289 (448)
|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.||.|+. ..+.+|+++|.+ ++ +..|+++.+++|..++
T Consensus 159 ~~~~g~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~--g~~~i~~~~~~p~~i~ 235 (429)
T TIGR00089 159 PYARGRERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSK-ID--GIERIRFGSSHPDDVT 235 (429)
T ss_pred ecccCCCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhc-CC--CCCEEEECCCChhhcC
Confidence 999999999999999999999999999999999999999987743 468999999875 43 5679999988998777
Q ss_pred HHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHH
Q 013195 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVN 369 (448)
Q Consensus 290 ~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~ 369 (448)
+.+ +..+.+.+.+|+++++|+||+|+++|+.|+|+++.+++.++++.++++.|++.+.++||+||||||+++|++|++
T Consensus 236 ~el--l~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~~~IvG~PgET~ed~~~tl~ 313 (429)
T TIGR00089 236 DDL--IELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITTDIIVGFPGETEEDFEETLD 313 (429)
T ss_pred HHH--HHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHHH
Confidence 654 333334445799999999999999999999999999999999999999777999999999999999999999999
Q ss_pred HHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEEEEEEe-cCCceEEEe
Q 013195 370 LIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIA-ADGIHLVRL 445 (448)
Q Consensus 370 ~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vlve~~~-~~~~~~~g~ 445 (448)
|+++++++.+++|+|+|+||||+++|+ ++|.+++++|+++|+++++. .++++.++|++++||||+.+ .++.+++||
T Consensus 314 ~i~~~~~~~~~~~~~sp~pgT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~~~~~~g~ 393 (429)
T TIGR00089 314 LVEEVKFDKLHSFIYSPRPGTPAADMKDQVPEEVKKERLERLIALQKEISLEKNKKYVGKTLEVLVEGEEGKKEGELTGR 393 (429)
T ss_pred HHHhcCCCEeeccccCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEecccCCCCeEEEE
Confidence 999999999999999999999999998 89999999999999999985 57889999999999999743 233367899
Q ss_pred eC
Q 013195 446 EQ 447 (448)
Q Consensus 446 ~~ 447 (448)
|.
T Consensus 394 ~~ 395 (429)
T TIGR00089 394 TE 395 (429)
T ss_pred CC
Confidence 85
No 20
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=100.00 E-value=2e-74 Score=594.64 Aligned_cols=377 Identities=24% Similarity=0.414 Sum_probs=322.0
Q ss_pred CCceEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccc
Q 013195 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (448)
Q Consensus 57 ~~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~ 136 (448)
..++|||+||||++|++|||.|++.|.+.||+.++++++||+|+||||+|++.|++++++.|+++++.+.+|||+||+|+
T Consensus 6 ~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~aD~ivinTC~v~~~a~~k~~~~i~~~~~~~~~ivv~GC~a~ 85 (440)
T PRK14862 6 AAPKIGFVSLGCPKALVDSERILTQLRAEGYEISPSYDGADLVIVNTCGFIDSAVQESLEAIGEALAENGKVIVTGCLGA 85 (440)
T ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEecccccchHHHHHHHHHHHHHhcCCCEEEECCccc
Confidence 34689999999999999999999999999999999999999999999999999999999999998776667999999999
Q ss_pred cchh-hhc-CC-ccEEEcCCchhHHHHHHHHHhcCCceEeecccCCCCCCCCcccCCCcEEEEEeCCCCCCCccceeeCc
Q 013195 137 GSRD-LKE-LE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKH 213 (448)
Q Consensus 137 ~~~e-~~~-~~-~d~vvg~~~~~~i~~~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~i~isrGC~~~CsFC~~~~ 213 (448)
. ++ +.+ ++ +|.|+|+.++..+++++........... .....+... ......+++|++|||||++|+||++|.
T Consensus 86 ~-~~~~~~~~~~v~~v~g~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~a~v~isrGCp~~CsFC~ip~ 160 (440)
T PRK14862 86 K-EDQIREVHPKVLAVTGPHAYEQVMEAVHEHVPKPHDPF-VDLVPPQGV---KLTPRHYAYLKISEGCNHRCTFCIIPS 160 (440)
T ss_pred C-HHHHHhhCCCceEEECCCCHHHHHHHHHHhhccccccc-cccCcchhc---ccCCCcEEEEEeccCCCCCCccCCccc
Confidence 5 54 443 44 5789999999999998876532111000 000000000 012346789999999999999999999
Q ss_pred cCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC------------CCHHHHHHHHHHhCCCCCcceEEEe
Q 013195 214 ARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG------------VNLPILLNAIVAELPPDGSTMLRIG 281 (448)
Q Consensus 214 ~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~------------~~l~~ll~~l~~~~~~~~~~~iri~ 281 (448)
.+|++|+||+++|++|++.+.+.|+++|+|+++|++.||.|.. ..+.+|+++|.+. +. |+|+.
T Consensus 161 ~~G~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~~~~~~Ll~~l~~~----~~-~~r~~ 235 (440)
T PRK14862 161 MRGDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVKTRMTDLCEALGEL----GA-WVRLH 235 (440)
T ss_pred ccCCccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchhhHHHHHHHHHHhc----CC-EEEEe
Confidence 9999999999999999999999999999999999999987631 3688899988763 33 89998
Q ss_pred ecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCH
Q 013195 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 361 (448)
Q Consensus 282 ~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ 361 (448)
++.|..+.++ +.++++.+++|+++|||+||+|+++|+.|+|+++.+++.++++.+++..|++.+.++||+||||||+
T Consensus 236 ~~~p~~~~de---ll~~m~~g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~~~i~i~t~~IvGfPgET~ 312 (440)
T PRK14862 236 YVYPYPHVDE---VIPLMAEGKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKWREICPDLTIRSTFIVGFPGETE 312 (440)
T ss_pred cCCCCcCCHH---HHHHHhcCCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHCCCceecccEEEECCCCCH
Confidence 8888765543 4555555666779999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEEEEEEecC
Q 013195 362 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAAD 438 (448)
Q Consensus 362 ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vlve~~~~~ 438 (448)
++|++|++|+++++++.+++|.|+|+||||++.++ ++|++++++|+++|+++++. .+++++++|++++||||+..++
T Consensus 313 edf~~tl~fi~e~~~d~~~~f~ysP~pGT~a~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlie~~~~~ 392 (440)
T PRK14862 313 EDFQMLLDFLKEAQLDRVGCFKYSPVEGATANDLPDQVPEEVKEERWARFMEVQQQISAARLQRKVGRTLQVLIDEVDEE 392 (440)
T ss_pred HHHHHHHHHHHHcCCCeeeeEeecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCC
Confidence 99999999999999999999999999999999998 89999999999999999885 6788999999999999976544
Q ss_pred CceEEEeeCC
Q 013195 439 GIHLVRLEQF 448 (448)
Q Consensus 439 ~~~~~g~~~~ 448 (448)
+ +.|||++
T Consensus 393 ~--~~Gr~~~ 400 (440)
T PRK14862 393 G--AIGRSKA 400 (440)
T ss_pred C--eEEECcc
Confidence 4 5899873
No 21
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=100.00 E-value=4.4e-74 Score=592.32 Aligned_cols=381 Identities=26% Similarity=0.457 Sum_probs=324.3
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccccch
Q 013195 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSR 139 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~ 139 (448)
++||+||||++|++|||.|++.|.+.||+++++.++||+|+|||||||..|+++++++++++++++++||||||||+..|
T Consensus 1 ~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~viinTC~v~~~a~~~~~~~i~~~~~~~~~vvvgGc~a~~~p 80 (430)
T TIGR01125 1 KIGFISLGCPKNLVDSEVMLGILREAGYEVTPNYEDADYVIVNTCGFIEDARQESIDTIGELADAGKKVIVTGCLVQRYK 80 (430)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeCCCccchHHHHHHHHHHHHHhcCCCEEEECCccccch
Confidence 58999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred hh--hcCC-ccEEEcCCchhHHHHHHHHHhcCCceEeecccCCCCCCCCccc-CCCcEEEEEeCCCCCCCccceeeCccC
Q 013195 140 DL--KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHAR 215 (448)
Q Consensus 140 e~--~~~~-~d~vvg~~~~~~i~~~l~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~i~isrGC~~~CsFC~~~~~r 215 (448)
+. ..++ +|.|+|+..+..+.+.+............ ...+....|... .+..+++|++|||||++|+||.+|..+
T Consensus 81 ee~~~~~~~vd~v~g~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~srGC~~~CsfC~~~~~~ 158 (430)
T TIGR01125 81 EELKEEIPEVHAITGSGDVENILNAIESREPGDKIPFK--SEIEMGEVPRILLTPRHYAYLKVAEGCNRRCAFCIIPSIR 158 (430)
T ss_pred HHHHhhCCCCcEEECCCCHHHHHHHHHHHhccCCcccc--cccccccccccccCCCeEEEEEEccCCCCCCCcCCeeccc
Confidence 73 3454 68899998877777666543322111000 001000012111 234578999999999999999999999
Q ss_pred CCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC--CCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHH
Q 013195 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (448)
Q Consensus 216 g~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~--~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~ 293 (448)
|++|+||+++|++|++.+.+.|+++|+|+|+|++.||.+. ...+.+|+++|.+ .+ +..|+|+.+++|..+++++
T Consensus 159 G~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~-~~--~i~~~r~~~~~p~~~~~el- 234 (430)
T TIGR01125 159 GKLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGK-VG--GIYWIRMHYLYPDELTDDV- 234 (430)
T ss_pred CCceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHh-cC--CccEEEEccCCcccCCHHH-
Confidence 9999999999999999999999999999999999998763 2579999999976 33 3568999889998887655
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHh
Q 013195 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (448)
Q Consensus 294 el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~ 373 (448)
+..|.+.+++|+++++|+||+|+++|+.|+|+++.+++.++++.++++.|++.+.++||+||||||+++|++|++|+++
T Consensus 235 -l~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~~I~G~PgET~e~~~~t~~fl~~ 313 (430)
T TIGR01125 235 -IDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTTFIVGFPGETEEDFQELLDFVEE 313 (430)
T ss_pred -HHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEEEEEECCCCCHHHHHHHHHHHHh
Confidence 3333344457899999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred cCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEEEEEEecCC-ceEEEeeC
Q 013195 374 YKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADG-IHLVRLEQ 447 (448)
Q Consensus 374 l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vlve~~~~~~-~~~~g~~~ 447 (448)
++++.+++|+|+|+|||++++++ ++|.+++++|+++|.++.+. .+++++++|++++||||+.++++ ..+.|||.
T Consensus 314 ~~~~~~~~~~~sp~pGT~~~~~~~~i~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vl~e~~~~~~~~~~~g~~~ 391 (430)
T TIGR01125 314 GQFDRLGAFTYSPEEGTDAFALPDQVPEEVKEERLERLMQLQQRISAKKNQEFVGKKIEVLIDGYEPETNLLLIGRTY 391 (430)
T ss_pred cCCCEEeeeeccCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEeccCCCCCcEEEECc
Confidence 99999999999999999999998 89999999999999999884 57889999999999999765432 35789986
No 22
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2.2e-73 Score=589.91 Aligned_cols=384 Identities=30% Similarity=0.524 Sum_probs=329.8
Q ss_pred CCCCCCCCCceEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHH---HHHHhcCC-
Q 013195 50 SLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL---IAKCKSAK- 125 (448)
Q Consensus 50 ~~~~~~~~~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~---i~~~~~~~- 125 (448)
+..++.|.++++||+||||+||++|||.|++.|.+.||++++++++||+|+||||||+++|++++++. ++++++.+
T Consensus 12 ~~~~~~~~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~AD~~iiNTC~v~~~a~~~~~~~i~~~~~~k~~~p 91 (459)
T PRK14338 12 PDRDATPRERRYYVWTVGCQMNVSDSERLEAALQGVGYSPAERPEDADFIVLNSCSVRASAEERILGKLGELQRLKRQRP 91 (459)
T ss_pred cccccCCCCCEEEEEecCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceeeHHHHHHHHHHHHHHHHHhhCC
Confidence 45688898889999999999999999999999999999999999999999999999999999999877 45555543
Q ss_pred -CCEEEEccccccchh-h--hcCC-ccEEEcCCchhHHHHHHHHHhcCCceEeecccCCCCCCCCcccCCCcEEEEEeCC
Q 013195 126 -KPLVVAGCVPQGSRD-L--KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINV 200 (448)
Q Consensus 126 -~~vVvgGc~a~~~~e-~--~~~~-~d~vvg~~~~~~i~~~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~i~isr 200 (448)
++||||||+|+..++ + ..++ +|.|+|++++..+++++...... .. .+.+.....+.....+|++|+|
T Consensus 92 ~~~ivv~GC~a~~~~~~~~~~~~p~vd~v~g~~~~~~i~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~i~I~r 163 (459)
T PRK14338 92 DTRIVLWGCMVGPNNQSIFAERLPMVDHFVSPSAVDEVVALAPNPIYQ-----LD---EPALPVADWSHPPVTVHVPIIY 163 (459)
T ss_pred CCEEEEeCCccccChhHhhHhcCCCCcEEECCccHHHHHHHHHhhccc-----cc---cccccccccCCCceEEEEEccc
Confidence 579999999999986 4 4565 68999999999999887542110 01 1222111112345678999999
Q ss_pred CCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC--CCHHHHHHHHHHhCCCCCcceE
Q 013195 201 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTML 278 (448)
Q Consensus 201 GC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~--~~l~~ll~~l~~~~~~~~~~~i 278 (448)
|||++|+||.+|..+|+.|++++++|++|++.+.+.|+++|+|+|++++.||.|.. ..+.+|++.+.+. + +..++
T Consensus 164 GC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~-~--gi~~i 240 (459)
T PRK14338 164 GCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEI-P--GLERL 240 (459)
T ss_pred CCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhc-C--CcceE
Confidence 99999999999999999999999999999999999999999999999999998642 3588999998763 3 55688
Q ss_pred EEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCC
Q 013195 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358 (448)
Q Consensus 279 ri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~Pg 358 (448)
|+.+.+|..+++.+ +..+.+.+.+|+++|+|+||+|+++|+.|+|+++.+++.++++.+++.+||+.+.+|||+||||
T Consensus 241 r~~~~~p~~i~~el--l~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~d~IvG~Pg 318 (459)
T PRK14338 241 RFLTSHPAWMTDRL--IHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTTDIIVGHPG 318 (459)
T ss_pred EEEecChhhcCHHH--HHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCC
Confidence 98888998888765 4344444456899999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-C----CCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEE
Q 013195 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-K----VPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIW 431 (448)
Q Consensus 359 ET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~----v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vl 431 (448)
||++||++|++++++++++.++++.|+|+|||++++|+ + +|++++++|.++|+++++. .+.++.++|++++||
T Consensus 319 ET~ed~~~ti~~l~~l~~~~v~i~~ysp~pGT~~~~~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~~G~~~~vl 398 (459)
T PRK14338 319 ETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGTLAAEMEDDPALAVPPEEKQRRRRALEQLQEQIATERNARFLGQTVEVL 398 (459)
T ss_pred CCHHHHHHHHHHHHHcCCCEeEEEecCCCCCChhhhCcCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999999999999999999999999999999998 7 9999999999999999985 568899999999999
Q ss_pred EEEEecCCceEEEeeCC
Q 013195 432 ITEIAADGIHLVRLEQF 448 (448)
Q Consensus 432 ve~~~~~~~~~~g~~~~ 448 (448)
||+.+ ++ .+.|||++
T Consensus 399 ve~~~-~~-~~~g~~~~ 413 (459)
T PRK14338 399 VEGEA-KG-KWRGRTRG 413 (459)
T ss_pred EEEcC-CC-eEEEECCC
Confidence 99742 22 57899864
No 23
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=4.9e-73 Score=581.11 Aligned_cols=369 Identities=28% Similarity=0.492 Sum_probs=317.0
Q ss_pred cChhHHHHHHHHHH-hCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhc---CCCCEEEEccccccchh-h-hc
Q 013195 70 HNQSDSEYMAGQLS-AFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKS---AKKPLVVAGCVPQGSRD-L-KE 143 (448)
Q Consensus 70 ~N~~dse~~~~~L~-~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~---~~~~vVvgGc~a~~~~e-~-~~ 143 (448)
||++|||.|++.|. +.||++++++++||+|+||||||+++|++++++.|+++++ ++++|||+||+|+..++ + +.
T Consensus 1 ~N~~dse~~~~~l~~~~G~~~~~~~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~ivv~GC~a~~~~~~~~~~ 80 (420)
T PRK14339 1 MNVRDSEHMIAELSQKEDYKLTQDIKEADLILINTCSVREKPVHKLFSEIGQFNKIKKEGAKIGVCGCTASHLGEEIIKR 80 (420)
T ss_pred CCHHHHHHHHHHHhhcCCcEECCCcccCCEEEEeccCccchHHHHHHHHHHHHHHhhCCCCeEEEECCccccCCHHHHhh
Confidence 79999999999999 5899999999999999999999999999999999988854 35679999999999885 4 36
Q ss_pred CC-ccEEEcCCchhHHHHHHHHHhcCCceEeecccCCCCCCCCcccCCCcEEEEEeCCCCCCCccceeeCccCCCccccC
Q 013195 144 LE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222 (448)
Q Consensus 144 ~~-~d~vvg~~~~~~i~~~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~ 222 (448)
++ +|.|+|+.++..+++++..... ......... .....+..+.+...++|++|||||++|+||++|..+|+.+++|
T Consensus 81 ~~~vd~v~g~~~~~~i~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~ 157 (420)
T PRK14339 81 APYVDFVLGARNVSKISQVIHTPKA-VEVDIDYDE--STYAFADFRKSPYKSLVNISIGCDKKCTYCIVPHTRGKEISIP 157 (420)
T ss_pred CCCCcEEECCCCHHHHHHHHHhhcc-cceeccccc--cccccccccCCCeEEEEEecCCCCCCCCcCCcccccCCCCCCC
Confidence 65 6789999999999998865311 111100000 0011112223456899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC-----CCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHH
Q 013195 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (448)
Q Consensus 223 ~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~-----~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (448)
+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..|.+||+.+.+ ++ +..|+|+++++|..+++++ +..
T Consensus 158 ~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~-~~--g~~~ir~~s~~p~~~~~el--l~~ 232 (420)
T PRK14339 158 MDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKLSE-IE--GLERIRFTSPHPLHMDDKF--LEE 232 (420)
T ss_pred HHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHHhc-CC--CccEEEECCCChhhcCHHH--HHH
Confidence 9999999999999999999999999999988641 358999999875 44 6679999888998877665 444
Q ss_pred HHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCC
Q 013195 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (448)
Q Consensus 298 l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~ 377 (448)
+.+.+.+|+++|+|+||+|+++|+.|||+++.+++.++++.+++.+|++.+.+|||+||||||++||++|++|+++++++
T Consensus 233 ~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i~i~~d~IvGfPgETeedf~~Tl~fl~~l~~~ 312 (420)
T PRK14339 233 FAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEVSISTDIIVGFPGESDKDFEDTMDVLEKVRFE 312 (420)
T ss_pred HHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCC
Confidence 44555679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeceeCCCCcccCCC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEEEEEEecCCceEEEeeC
Q 013195 378 QVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLVRLEQ 447 (448)
Q Consensus 378 ~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vlve~~~~~~~~~~g~~~ 447 (448)
++++|.|+|+||||+++|+ ++|.+++++|+++|+++++. .+.+++++|++++||||+.++++ .+.|||.
T Consensus 313 ~~~~f~~sp~pGT~a~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~~~~-~~~g~t~ 384 (420)
T PRK14339 313 QIFSFKYSPRPLTEAAAWKNQVDEEVASERLERLQNRHKEILDEIAKKEVGKTHVVLFEELRANG-GVAGRSD 384 (420)
T ss_pred EEeeEecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCC-eEEEECC
Confidence 9999999999999999998 99999999999999999994 67899999999999999764444 5789986
No 24
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=9.1e-73 Score=583.16 Aligned_cols=380 Identities=27% Similarity=0.459 Sum_probs=322.7
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCC----CCEEEEcccc
Q 013195 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK----KPLVVAGCVP 135 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~----~~vVvgGc~a 135 (448)
+|||+||||++|++|||.|++.|.+.||++++++++||+|+||||||+++|++++++.++++++.+ .+|+|+||+|
T Consensus 2 ~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADi~iiNTC~v~~~a~~~~~~~i~~~~~~~~~~~~~v~v~GC~a 81 (440)
T PRK14334 2 KAHIITYGCQMNEYDTHLVESELVSLGAEIVDSVDEADFVLVNTCAVRGKPVEKVRSLLGELRKEKAQRPLVVGMMGCLA 81 (440)
T ss_pred eEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceeehHHHHHHHHHHHHHhhCcCCCcEEEEEcchh
Confidence 799999999999999999999999999999999999999999999999999999999998886433 3488999999
Q ss_pred ccch-h-hhc-CCccEEEcCCchhHHHHHHHHHhcCCceEeecccCCCCCCCCcccCCCcEEEEEeCCCCCCCccceeeC
Q 013195 136 QGSR-D-LKE-LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTK 212 (448)
Q Consensus 136 ~~~~-e-~~~-~~~d~vvg~~~~~~i~~~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~i~isrGC~~~CsFC~~~ 212 (448)
+..+ + +.. ..+|.|+|++++..+++++..... ............ .+|.....+..++|+|++|||++|+||.+|
T Consensus 82 ~~~~~~~l~~~~~vd~v~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~l~isrGC~~~CsfC~~p 158 (440)
T PRK14334 82 QLEEGQQMARKFGVDVLLGPGALTDIGKALEANER--FWGLQFKDELHD-HIPPPPQGKLSAHLTIMRGCNHHCTYCIVP 158 (440)
T ss_pred ccCChhHHhcCCCCCEEECCCCHHHHHHHHHhhcc--cccccccccccc-ccccccCCCeEEEEEeccCCCCCCcCCCcc
Confidence 9985 3 443 357889999998888888754311 000000010100 122223346789999999999999999999
Q ss_pred ccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC--CCHHHHHHHHHHhCCCCCcceEEEeecCCcChhH
Q 013195 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290 (448)
Q Consensus 213 ~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~--~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~ 290 (448)
..+|+.+++++++|++|++.+.+.|+++|+|+|+|++.||.+.. ..+.+|++.+.+ + +..++++.+.+|..+++
T Consensus 159 ~~~g~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~-~---~i~~ir~~~~~p~~i~~ 234 (440)
T PRK14334 159 TTRGPEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGA-S---GIPRVKFTTSHPMNFTD 234 (440)
T ss_pred hhcCCCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHh-c---CCcEEEEccCCcccCCH
Confidence 99999999999999999999999999999999999999987643 468899998864 3 44688998889988876
Q ss_pred HHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHH
Q 013195 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 370 (448)
Q Consensus 291 ~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~ 370 (448)
++ +..+.+.+.+|+++|+|+||+|+++|+.|+|+++.+++.++++.++++.|++.+.+|||+||||||+++|++|++|
T Consensus 235 el--l~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~ 312 (440)
T PRK14334 235 DV--IAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLSTDIIVGFPGETEEDFQETLSL 312 (440)
T ss_pred HH--HHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEECCCCCHHHHHHHHHH
Confidence 55 4444444556899999999999999999999999999999999999998888999999999999999999999999
Q ss_pred HHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCCcEEEEEEEEEecCCceEEEeeC
Q 013195 371 IKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLVRLEQ 447 (448)
Q Consensus 371 i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g~~~~vlve~~~~~~~~~~g~~~ 447 (448)
+.+++++.+++|.|+|+||||+++++ ++|++++++|+++|+++++. .+++++++|++++||||+.++++..+.|||+
T Consensus 313 i~~l~~~~i~~f~ysp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~~~~~g~t~ 392 (440)
T PRK14334 313 YDEVGYDSAYMFIYSPRPGTPSYKHFQDLPREVKTERLQRLIEKQKEWSYRRNARWVGRTQEVLVRGDAKDAGFLEGHTR 392 (440)
T ss_pred HHhcCCCEeeeeEeeCCCCChhHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEeccCCCCeEEEECC
Confidence 99999999999999999999999987 89999999999999999995 6789999999999999986544346789987
Q ss_pred C
Q 013195 448 F 448 (448)
Q Consensus 448 ~ 448 (448)
.
T Consensus 393 ~ 393 (440)
T PRK14334 393 G 393 (440)
T ss_pred C
Confidence 4
No 25
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-59 Score=447.17 Aligned_cols=386 Identities=25% Similarity=0.429 Sum_probs=329.2
Q ss_pred CCCceEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcC----C----CC
Q 013195 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA----K----KP 127 (448)
Q Consensus 56 ~~~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~----~----~~ 127 (448)
+...|||++||||+||..|+|.+..+|.+.||..++++++||+|+++||+++..|++++++.++.+|.. . .+
T Consensus 70 g~gRkv~~etYGCQMNvnD~Eiv~sIl~~~Gy~~~~~~e~Advill~TCsiRe~AEq~iwnrL~~~ra~k~~~~~~rpl~ 149 (552)
T KOG2492|consen 70 GNGRKVYLETYGCQMNVNDTEIVWSILKKSGYLRSDKPEEADVILLVTCSIREGAEQRIWNRLKLLRALKVNRPTSRPLR 149 (552)
T ss_pred cCCcEEEEEEeeeeeccchHHHHHHHHHhcCccccCCcccCcEEEEEEeeccccHHHHHHHHHHHHHHhhccCccCCCce
Confidence 345789999999999999999999999999999999999999999999999999999999888766432 1 25
Q ss_pred EEEEccccccchh--hh-cCCccEEEcCCchhHHHHHHHHHhcCCce-E--eecccCCCCCCCCc-ccCCCcEEEEEeCC
Q 013195 128 LVVAGCVPQGSRD--LK-ELEGVSIVGVQQIDRVVEVVEETLKGHEV-R--LLHRKKLPALDLPK-VRRNKFVEILPINV 200 (448)
Q Consensus 128 vVvgGc~a~~~~e--~~-~~~~d~vvg~~~~~~i~~~l~~~~~g~~~-~--~~~~~~~~~~~~p~-~~~~~~~~~i~isr 200 (448)
|.|-||||+...+ +. +--+|.|.|+..+..+|.+|.-...|... . +...+.+.+.. |. .......|||.|.|
T Consensus 150 v~vLGCMAERlk~~iL~~~kmVdivaGPDaYrDLPrll~~~~~g~~~in~~Lsldetyadv~-pvr~~~~s~tAFvSiMR 228 (552)
T KOG2492|consen 150 VGVLGCMAERLKEKILEREKMVDIVAGPDAYRDLPRLLAVARGGQNGINVLLSLDETYADVQ-PVRVSSSSTTAFVSIMR 228 (552)
T ss_pred EEeehhhHHHHHHHHhhhhhceeeeeCchhhhhhHHHHHHHhccCCceeEEEeccchhcccc-eeeccCccchhHHHHHh
Confidence 7788999998875 33 33478899999999999998876655432 1 11112222211 21 23457789999999
Q ss_pred CCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC-------------------------
Q 013195 201 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------------------------- 255 (448)
Q Consensus 201 GC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~------------------------- 255 (448)
||++-|+||++|+.||+.|+||++.|++|++.|.++|++++.|.|+|+++|..+.
T Consensus 229 GCdNMCtyCiVpftrGreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~GFst~yK~K~g 308 (552)
T KOG2492|consen 229 GCDNMCTYCIVPFTRGRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSPGFSTVYKPKQG 308 (552)
T ss_pred ccccccceEEEeccCCcccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCCCceeeecccCC
Confidence 9999999999999999999999999999999999999999999999999995321
Q ss_pred CCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHH
Q 013195 256 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335 (448)
Q Consensus 256 ~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~ 335 (448)
+..|+.||+.+....| ..++||.+.+|.++.+++ +.-+...+..|+.+|+|.||+|.++|+.|.|||+.+.|.+.
T Consensus 309 Gl~Fa~LLd~vs~~~P---emR~RFTSPHPKDfpdev--l~li~~rdnickqihlPAqSgds~vLE~mrRgysreayl~l 383 (552)
T KOG2492|consen 309 GLRFAHLLDQVSRADP---EMRIRFTSPHPKDFPDEV--LELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYSREAYLEL 383 (552)
T ss_pred CccHHHHHHHHhhhCc---ceEEEecCCCCCCChHHH--HHHHHhCcchhheeeccccCCchHHHHHHHccCChHhhhhH
Confidence 2479999999998764 678888888999888776 33445678899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccC-CC-CCCHHHHHHHHHHHHHH
Q 013195 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MK-KVPSAVVKKRSRELTSV 413 (448)
Q Consensus 336 i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~-~~-~v~~~~~~~R~~~l~~~ 413 (448)
+..++..+||+.+..|||.||-|||++|+++|+.++++.+.+.++.|.|+-+.+|.++. +. ++|++++.+|..+|...
T Consensus 384 v~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~ddvpeeVKnrrl~~Li~~ 463 (552)
T KOG2492|consen 384 VAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKDDVPEEVKNRRLFELITF 463 (552)
T ss_pred HHHHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHhccCeeeeEEeeecccchhhhhhcccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999995 45 89999999999999999
Q ss_pred HHh--hchhhcCCCcEEEEEEEEEecC-CceEEEeeC
Q 013195 414 FEA--FTPYLGMEGRVERIWITEIAAD-GIHLVRLEQ 447 (448)
Q Consensus 414 ~~~--~~~~~~~~g~~~~vlve~~~~~-~~~~~g~~~ 447 (448)
|.. ...++.++|.++-||+|+.++- ...+.||+.
T Consensus 464 Fre~A~~~~d~lvgc~Qlvlveg~sKrs~t~~~gr~d 500 (552)
T KOG2492|consen 464 FREEAIKFNDGLVGCTQLVLVEGKSKRSATDLCGRND 500 (552)
T ss_pred HHHHHHHHhccCccccceeeeechhhhhHHHHhcccC
Confidence 984 5689999999999999998742 234667653
No 26
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=100.00 E-value=5.8e-38 Score=328.86 Aligned_cols=309 Identities=19% Similarity=0.230 Sum_probs=226.2
Q ss_pred ChhHHHHHHHHHHhCC-Cee--ecC---------------CCCCcEEEEeecccccchHHHHHHHHHHHhcC--CCCEEE
Q 013195 71 NQSDSEYMAGQLSAFG-YAL--TDN---------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVV 130 (448)
Q Consensus 71 N~~dse~~~~~L~~~G-~~~--~~~---------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~--~~~vVv 130 (448)
--.--.++++.|++.| +++ .|. ...+|+|+|++.| +....+.++++.+|+. +.+||+
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~~pdvVgis~~t---~~~~~a~~~~~~~k~~~P~~~iV~ 97 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAHCPDLVLITAIT---PAIYIACETLKFARERLPNAIIVL 97 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhcCcCEEEEecCc---ccHHHHHHHHHHHHHHCCCCEEEE
Confidence 3445688999999999 443 221 1368999994333 2334566677766654 778999
Q ss_pred Eccccccchh--hhcC-CccE-EEcCCchhHHHHHHHHHhcCC---ce---E---------eeccc---CCCCCC-CC-c
Q 013195 131 AGCVPQGSRD--LKEL-EGVS-IVGVQQIDRVVEVVEETLKGH---EV---R---------LLHRK---KLPALD-LP-K 186 (448)
Q Consensus 131 gGc~a~~~~e--~~~~-~~d~-vvg~~~~~~i~~~l~~~~~g~---~~---~---------~~~~~---~~~~~~-~p-~ 186 (448)
||+||+..|+ +... .+|+ |+|+++ ..++++++....|. .. + +.... ...+++ +| .
T Consensus 98 GG~h~t~~~~~~l~~~p~vD~Vv~GEGE-~~~~~Ll~~l~~g~~~~~~~~I~Gi~y~~~g~i~~~~~~~~i~dLd~~~P~ 176 (497)
T TIGR02026 98 GGIHPTFMFHQVLTEAPWIDFIVRGEGE-ETVVKLIAALENHNFAEDRNKVDGIAFLRDQEIVETLAAPMIQDLDVYRPD 176 (497)
T ss_pred cCCCcCcCHHHHHhcCCCccEEEeCCcH-HHHHHHHHHHHcCCCCCchhhCCceEEEeCCEEEeCCCCCCccccccCCCC
Confidence 9999999886 3344 3686 556665 78999998776654 11 0 00000 111121 11 1
Q ss_pred c--------cC---CCcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHH-CCCcEEEEEecCCCCCCCC
Q 013195 187 V--------RR---NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRD 254 (448)
Q Consensus 187 ~--------~~---~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~-~G~~ei~~~~~~~~~yg~d 254 (448)
. .. ....+.+++|||||++|+||..+...+++|.++++.|++||+.+.+ .|++.|.|+|++++.. .
T Consensus 177 ~~l~~~~~y~~~~~~~~~~~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~-~- 254 (497)
T TIGR02026 177 WELVDWKKYIYYPLGVRVAVPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTHGVGFFILADEEPTIN-R- 254 (497)
T ss_pred cccCchhhcccccCCCceeeeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHHcCCCEEEEEecccccC-H-
Confidence 0 00 1224568999999999999999877778999999999999999976 5999999999876543 2
Q ss_pred CCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHH
Q 013195 255 IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT 334 (448)
Q Consensus 255 ~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~ 334 (448)
..+.+++++|.+.-+ ....| .. +++++.+... +++.++++.++ |.++++|+||+|+++|+.|+|+++.+++.+
T Consensus 255 --~~~~~l~~~l~~~~~-l~i~w-~~-~~r~~~i~~d-~ell~~l~~aG-~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ 327 (497)
T TIGR02026 255 --KKFQEFCEEIIARNP-ISVTW-GI-NTRVTDIVRD-ADILHLYRRAG-LVHISLGTEAAAQATLDHFRKGTTTSTNKE 327 (497)
T ss_pred --HHHHHHHHHHHhcCC-CCeEE-EE-ecccccccCC-HHHHHHHHHhC-CcEEEEccccCCHHHHHHhcCCCCHHHHHH
Confidence 246788888876411 01122 12 2444444211 23445555555 789999999999999999999999999999
Q ss_pred HHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccC
Q 013195 335 VVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394 (448)
Q Consensus 335 ~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~ 394 (448)
+++.++++ ||.+.++||+|+||||.+++++|++++.++++++++++.++|+|||++++
T Consensus 328 ai~~l~~~--Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~~~tP~PGT~l~~ 385 (497)
T TIGR02026 328 AIRLLRQH--NILSEAQFITGFENETDETFEETYRQLLDWDPDQANWLMYTPWPFTSLFG 385 (497)
T ss_pred HHHHHHHC--CCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceEEEEecCCCCcHHHH
Confidence 99999999 99999999999999999999999999999999999999999999999875
No 27
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=100.00 E-value=5.3e-37 Score=320.47 Aligned_cols=280 Identities=20% Similarity=0.261 Sum_probs=202.9
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcC--CCCEEEEccccccchh--hhcC-CccE-EEcCCchhHHHHHHHHHhc
Q 013195 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVVAGCVPQGSRD--LKEL-EGVS-IVGVQQIDRVVEVVEETLK 167 (448)
Q Consensus 94 ~~aDvv~intctv~~~a~~~~~~~i~~~~~~--~~~vVvgGc~a~~~~e--~~~~-~~d~-vvg~~~~~~i~~~l~~~~~ 167 (448)
.++|+|+|+|+|.... .+.++++.+|+. +.+||+||+|++..|+ +... .+|. |.|+++ ..+.++++....
T Consensus 67 ~~~Dlv~is~~t~~~~---~~~~ia~~iK~~~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GEgE-~~l~~l~~g~~~ 142 (472)
T TIGR03471 67 KDYDLVVLHTSTPSFP---SDVKTAEALKEQNPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFD-YTIKEVAEGKPL 142 (472)
T ss_pred cCCCEEEEECCCcchH---HHHHHHHHHHHhCCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCchH-HHHHHHHcCCCh
Confidence 4689999988776554 355566666654 5789999999999997 3333 3686 456655 567777653210
Q ss_pred CCc----eE-----ee-cc-c-CCCCCC-CCc----cc------------CCCcEEEEEeCCCCCCCccceeeCccC-C-
Q 013195 168 GHE----VR-----LL-HR-K-KLPALD-LPK----VR------------RNKFVEILPINVGCLGACTYCKTKHAR-G- 216 (448)
Q Consensus 168 g~~----~~-----~~-~~-~-~~~~~~-~p~----~~------------~~~~~~~i~isrGC~~~CsFC~~~~~r-g- 216 (448)
... .+ .. .. . ...+++ +|. ++ .....+.|++|||||++|+||.++... |
T Consensus 143 ~~i~Gi~~r~~~g~~~~~~~~~~~~dLd~lP~p~p~~~~~l~~~~y~~~~~~~~~~~i~tsRGCp~~C~FC~~~~~~~g~ 222 (472)
T TIGR03471 143 AEIDGLSYRGKDGKIVHNPDRPMIEDMDALPFVAPVYKRDLDIERYFIGYLKHPYISLYTGRGCPSKCTFCLWPQTVGGH 222 (472)
T ss_pred hcCCceEEEcCCCeEEeCCCCCCccchhhCCCCchhhhccCCHHHcccccccCceEEEEecCCCCCCCCCCCCCccCCCC
Confidence 000 00 00 00 0 011111 111 00 012345789999999999999987543 4
Q ss_pred CccccCHHHHHHHHHHHHHC--CCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHH
Q 013195 217 HLGSYTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294 (448)
Q Consensus 217 ~~rsr~~e~Iv~ei~~l~~~--G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~e 294 (448)
++|.++++.|++||+.+.+. |++.|+|.|++++.. . ..+.++++.|.+ . +..|... ... .++++
T Consensus 223 ~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~-~---~~~~~l~~~l~~-~---~i~~~~~--~~~-~~~~e--- 288 (472)
T TIGR03471 223 RYRTRSAESVIEEVKYALENFPEVREFFFDDDTFTDD-K---PRAEEIARKLGP-L---GVTWSCN--ARA-NVDYE--- 288 (472)
T ss_pred ceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCC-H---HHHHHHHHHHhh-c---CceEEEE--ecC-CCCHH---
Confidence 58999999999999999886 789999988665432 2 245677777754 2 3333322 122 24433
Q ss_pred HHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 013195 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 295 l~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l 374 (448)
+.++++..+ |.++++|+||+|+++|+.|+|+++.+++.++++.++++ |+.+.++||+|+||||.+++++|++++.++
T Consensus 289 ~l~~l~~aG-~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~--Gi~v~~~~IiGlPget~e~~~~ti~~~~~l 365 (472)
T TIGR03471 289 TLKVMKENG-LRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKL--GIKVHGTFILGLPGETRETIRKTIDFAKEL 365 (472)
T ss_pred HHHHHHHcC-CCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHC--CCeEEEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 344454544 78999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCeEEEEeceeCCCCcccC
Q 013195 375 KFPQVHISQFYPRPGTPAAR 394 (448)
Q Consensus 375 ~~~~v~i~~~~p~pGT~~~~ 394 (448)
+++.++++.++|+|||++++
T Consensus 366 ~~~~~~~~~l~P~PGT~l~~ 385 (472)
T TIGR03471 366 NPHTIQVSLAAPYPGTELYD 385 (472)
T ss_pred CCCceeeeecccCCCcHHHH
Confidence 99999999999999999875
No 28
>PRK00955 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=310.26 Aligned_cols=200 Identities=21% Similarity=0.335 Sum_probs=158.6
Q ss_pred cEEEEEeCCCCCCCccceeeCccCCC-ccccCHHHHHHHHHHHHHC-CCcEEE--EEecCCCCCCCC-------------
Q 013195 192 FVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIAD-GVKEVW--LSSEDTGAYGRD------------- 254 (448)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~-~rsr~~e~Iv~ei~~l~~~-G~~ei~--~~~~~~~~yg~d------------- 254 (448)
..++|.++|||+++|+||+++..+|+ ++||++++|++|++.+.+. |+++++ +.|++.+.||.+
T Consensus 292 i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~ 371 (620)
T PRK00955 292 VKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNK 371 (620)
T ss_pred EEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCeEEEEeCCCCCcccccccccccccccccccc
Confidence 34789999999999999999999998 5999999999999999987 888875 567888999742
Q ss_pred ------------C-CCCHHHHHHHHHHhCCCCCcceEEEee-cCCcChh-HHH-HHHHHHHhCCCcccccccccCCCCHH
Q 013195 255 ------------I-GVNLPILLNAIVAELPPDGSTMLRIGM-TNPPFIL-EHL-KEIAEVLRHPCVYSFLHVPVQSGSDA 318 (448)
Q Consensus 255 ------------~-~~~l~~ll~~l~~~~~~~~~~~iri~~-~~p~~i~-~~l-~el~~l~~~~~~~~~l~iglES~s~~ 318 (448)
. ...+.+||++|.+ ++ +..|+++++ ++.+.+. +.. +-+.++..+ .++.+++||+||+|++
T Consensus 372 ~clfp~~c~nl~~d~~~l~~LLr~l~~-l~--gvkrv~isSGIR~D~l~~~~~~~~l~eL~~~-~vsg~L~IapESgSd~ 447 (620)
T PRK00955 372 QCLFPKPCKNLDVDHKEYLELLRKVRK-LP--GVKKVFIRSGIRYDYLLHDKNDEFFEELCEH-HVSGQLKVAPEHISDR 447 (620)
T ss_pred ccccCccccccCcChHHHHHHHHHHhc-cC--CceEEEeecceeccccccCCcHHHHHHHHHH-hcCCCceeCcCCCChH
Confidence 0 1258899999975 55 667777765 3433321 100 013333333 3467899999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhCCC----CEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccC
Q 013195 319 VLSAMNREYTLSDFRTVVDTLIELVPG----MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394 (448)
Q Consensus 319 vLk~m~R~~t~e~~~~~i~~ir~~~pg----i~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~ 394 (448)
+|+.|+|+ +.+.+.+.++.+++..+. ..+.++||+||||||++||++|++|+++++++.++++.|+|+|||+++.
T Consensus 448 VLk~M~K~-~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fTP~PGT~At~ 526 (620)
T PRK00955 448 VLKLMGKP-SREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFYPTPGTLSTT 526 (620)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeeecCCCcchhh
Confidence 99999998 667777776666555443 3599999999999999999999999999999999999999999999988
Q ss_pred CC
Q 013195 395 MK 396 (448)
Q Consensus 395 ~~ 396 (448)
|.
T Consensus 527 My 528 (620)
T PRK00955 527 MY 528 (620)
T ss_pred cc
Confidence 74
No 29
>PRK01254 hypothetical protein; Provisional
Probab=100.00 E-value=3.5e-34 Score=296.53 Aligned_cols=199 Identities=20% Similarity=0.306 Sum_probs=173.5
Q ss_pred EEEEEeCCCCCCCccceeeCccCCC-ccccCHHHHHHHHHHHHHC--CCcEEE--EEecCCCCCCC---C----------
Q 013195 193 VEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIAD--GVKEVW--LSSEDTGAYGR---D---------- 254 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg~-~rsr~~e~Iv~ei~~l~~~--G~~ei~--~~~~~~~~yg~---d---------- 254 (448)
.++|+|+|||+++|+||+++..+|+ ++|||+++|++|++.+.+. |+++++ ++|++.+.||. +
T Consensus 373 ~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~~ 452 (707)
T PRK01254 373 RFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRRL 452 (707)
T ss_pred EEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCccccccccccccccccccccc
Confidence 4789999999999999999999998 7999999999999999974 999999 99999999996 2
Q ss_pred ----------CC---CCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHH
Q 013195 255 ----------IG---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321 (448)
Q Consensus 255 ----------~~---~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk 321 (448)
.. ..+.+||++|.+ ++ +..++++.+..|.++....+++.+.+....++.+|+|++||+|+++|+
T Consensus 453 ~Cl~P~~C~nL~~dh~~l~eLLrkLr~-Ip--GVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk 529 (707)
T PRK01254 453 SCVYPDICPHLDTDHEPTINLYRRARD-LK--GIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLS 529 (707)
T ss_pred cccCcccccccCCCHHHHHHHHHHHHh-CC--CceEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHH
Confidence 11 258899999975 66 788999999888777422223333333357788999999999999999
Q ss_pred hcCCC--CCHHHHHHHHHHHHHhCC-CCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCC---CCcccC
Q 013195 322 AMNRE--YTLSDFRTVVDTLIELVP-GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP---GTPAAR 394 (448)
Q Consensus 322 ~m~R~--~t~e~~~~~i~~ir~~~p-gi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~p---GT~~~~ 394 (448)
.|+|+ ++.+++.+.++++++..| ++.+.++||+||||||++||+++++|+++++++..+++.|+|.| ||.+|.
T Consensus 530 ~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ~FTPtP~t~~T~MYy 608 (707)
T PRK01254 530 KMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNFYPSPMANATTMYY 608 (707)
T ss_pred HhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCcceeeeeecCCCcCchHHHh
Confidence 99998 789999999999999987 68999999999999999999999999999999999999999999 777763
No 30
>PRK05481 lipoyl synthase; Provisional
Probab=100.00 E-value=1.4e-31 Score=261.27 Aligned_cols=211 Identities=17% Similarity=0.244 Sum_probs=174.4
Q ss_pred CCcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC-CCHHHHHHHHHH
Q 013195 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 268 (448)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~-~~l~~ll~~l~~ 268 (448)
....+||.+|+||+++|+||++|..+| +++++++|+++++.+.+.|+++|.|+|++...+. +.+ ..+.++++.|.+
T Consensus 51 ~~~~~fi~is~GC~~~C~FC~i~~~r~--~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~-~~~~~~l~~Ll~~I~~ 127 (289)
T PRK05481 51 RGTATFMILGDICTRRCPFCDVATGRP--LPLDPDEPERVAEAVARMGLKYVVITSVDRDDLP-DGGAQHFAETIRAIRE 127 (289)
T ss_pred CCeEEEEEecccccCCCCCceeCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcc-cccHHHHHHHHHHHHh
Confidence 346789999999999999999998765 7899999999999999999999999999865332 111 368899999987
Q ss_pred hCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEE
Q 013195 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (448)
Q Consensus 269 ~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i 348 (448)
.++ + .++++.+.++....+ ++..++..+ +..+..+.++ ++++|+.|+|+++.+++.++++.+++.+||+.+
T Consensus 128 ~~p--~-irI~~l~~~~~~~~e---~L~~l~~ag--~~i~~~~~et-s~~vlk~m~r~~t~e~~le~i~~ar~~~pgi~~ 198 (289)
T PRK05481 128 LNP--G-TTIEVLIPDFRGRMD---ALLTVLDAR--PDVFNHNLET-VPRLYKRVRPGADYERSLELLKRAKELHPGIPT 198 (289)
T ss_pred hCC--C-cEEEEEccCCCCCHH---HHHHHHhcC--cceeeccccC-hHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeE
Confidence 654 3 355554444433333 345555432 3344555666 589999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccc-CCCCCCHHHHHHHHHHHHHHHHhhc
Q 013195 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKKRSRELTSVFEAFT 418 (448)
Q Consensus 349 ~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~-~~~~v~~~~~~~R~~~l~~~~~~~~ 418 (448)
.+++|+|| |||++|+.+|++++++++++.+++|+|+| |++ .| ++|..++++|+++|++++.+.-
T Consensus 199 ~t~~IvGf-GET~ed~~~tl~~lrel~~d~v~if~Ys~----pa~k~~-~v~~~~k~~r~~~l~~~~~~i~ 263 (289)
T PRK05481 199 KSGLMVGL-GETDEEVLEVMDDLRAAGVDILTIGQYLQ----PSRKHL-PVERYVTPEEFDEYKEIALELG 263 (289)
T ss_pred eeeeEEEC-CCCHHHHHHHHHHHHhcCCCEEEEEccCC----CccccC-CCCCcCCHHHHHHHHHHHHHcC
Confidence 99999999 99999999999999999999999999999 777 66 8999999999999999998643
No 31
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.96 E-value=1.4e-27 Score=250.37 Aligned_cols=326 Identities=22% Similarity=0.334 Sum_probs=219.9
Q ss_pred ChhHHHHHHHHHHhCCCee----e--cC------------CCCCcEEEEeecccccchHHHHHHHHHHHhcC--CCCEEE
Q 013195 71 NQSDSEYMAGQLSAFGYAL----T--DN------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVV 130 (448)
Q Consensus 71 N~~dse~~~~~L~~~G~~~----~--~~------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~--~~~vVv 130 (448)
...--..+++.|...|+.. . .. ...++.+.+..+.- ........++...+.. ++.|++
T Consensus 30 ~~~g~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~ 107 (490)
T COG1032 30 PPLGLRKLAAVLERAGKPNLFFDVVAGEPDSLENLLDALKKIRADLIGVSDPLG--GLRPDALKLVAKARGRRDKPLVVV 107 (490)
T ss_pred CCcchHHhHHHHHhcCCccccccccccccccchhhhhhhccccceeEEEecccc--hhchhhhHHHHHHhcccCCCeEEe
Confidence 4444556777788777521 0 00 13445666633332 1112234444444433 245899
Q ss_pred Eccccccchh-hhcC-CccE-EEcCCchhHHHHHHHHHhcCCce--------E----e-e----cccCCCCCCC------
Q 013195 131 AGCVPQGSRD-LKEL-EGVS-IVGVQQIDRVVEVVEETLKGHEV--------R----L-L----HRKKLPALDL------ 184 (448)
Q Consensus 131 gGc~a~~~~e-~~~~-~~d~-vvg~~~~~~i~~~l~~~~~g~~~--------~----~-~----~~~~~~~~~~------ 184 (448)
||.+++..++ +... +.|. ++|+++ ..++++++....+... + . . ...+.+...+
T Consensus 108 GG~~~t~~~~~~~~~~~~D~iv~GeGE-~~~~~~~~~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (490)
T COG1032 108 GGPEATENPEPLLDFGPADIIVIGEGE-ETLPELLEALEEGEDDPRVPGLALPSFEEIVYDQDLDDVPIPAYDLVDDHKR 186 (490)
T ss_pred cCCCcCCCcHHHHhhcCCCEEEEcCch-HHHHHHHHHHhccccccccCccccCChhhcccccccccCCccceeecccccc
Confidence 9999998875 4333 3575 566665 6788888776554321 0 0 0 1111222211
Q ss_pred ---CcccC-CCcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC--C-C
Q 013195 185 ---PKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--G-V 257 (448)
Q Consensus 185 ---p~~~~-~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~--~-~ 257 (448)
|.... ......|+++||||++|+||.++... ++|+++++++++|++.+++.|.+.+.+..+|.+.|+... . .
T Consensus 187 ~~~p~~~~~~~~~~~ve~~RGCp~~C~FC~~~~~~-~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 265 (490)
T COG1032 187 DDLPPYGAGENRAFSVETSRGCPRGCRFCSITKHF-KYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEK 265 (490)
T ss_pred cccCCcccccceEEEEEeccCCCCCCCCCCCcccc-cccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCccccchh
Confidence 11111 23357899999999999999998765 799999999999999999999999887777888888752 1 2
Q ss_pred CHHHHHHHHHHhCCCCCcceEEEe--ecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHH-
Q 013195 258 NLPILLNAIVAELPPDGSTMLRIG--MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT- 334 (448)
Q Consensus 258 ~l~~ll~~l~~~~~~~~~~~iri~--~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~- 334 (448)
.+..+...+.+... .....+.+. .+.++.++. +++..+++..+ +..+.+|+||+|+++|+.|+|+++.++..+
T Consensus 266 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~r~d~~~~--~~~~~~~~~~g-~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~ 341 (490)
T COG1032 266 RFELLSLELIERGL-RKGCRVHISAPSLRADTVTD--EELLKLLREAG-LRRVYIGIESGSEELLKKINKGITTEEVLEE 341 (490)
T ss_pred hcccchHHHHHHhc-ccCceeeeeccccCchhcCH--HHHHHHHhhCC-CcceEEeccCCCHHHHHHHhCCCChHHHHHH
Confidence 22223223333211 022233333 235555552 23555666655 689999999999999999999999999995
Q ss_pred HHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHH---HHHHHhcCCC-eEEEEeceeCCCCcccCCCCCCHHHHHHH
Q 013195 335 VVDTLIELVPGMQIATDIICGFPGETDEDFNQT---VNLIKEYKFP-QVHISQFYPRPGTPAARMKKVPSAVVKKR 406 (448)
Q Consensus 335 ~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~t---l~~i~~l~~~-~v~i~~~~p~pGT~~~~~~~v~~~~~~~R 406 (448)
+++.+.++ ++.+..++|+|+||||++|+.+| ++++++++.. .+.++.|+|.|||+++.+++........+
T Consensus 342 a~~~~~~~--~~~~~~~~i~G~pget~ed~~~t~~~~~~~~~~~~~~~~~~~~~~p~p~t~~~~~~~~~~~~~~~~ 415 (490)
T COG1032 342 AVKIAKEH--GLRVKLYFIVGLPGETEEDVKETIELAKFIKKLGPKLYVSPSPFVPLPGTPLQEMPKLENELLKRR 415 (490)
T ss_pred HHHHHHhC--CceeeEEEEEcCCCCCHHHHHHHHHHHHHHHHhCccceEEEeeeeCCCCCchhhcccccchhhhhh
Confidence 99999999 99999999999999999999999 7888888885 89999999999999999875444444444
No 32
>PRK07094 biotin synthase; Provisional
Probab=99.95 E-value=1.2e-26 Score=231.24 Aligned_cols=208 Identities=16% Similarity=0.270 Sum_probs=164.0
Q ss_pred cEEEEEeCCCCCCCccceeeCccCCC-ccc-cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHh
Q 013195 192 FVEILPINVGCLGACTYCKTKHARGH-LGS-YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (448)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~-~rs-r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~ 269 (448)
..+.|++|+||+++|+||.++...+. .+. .++++|+++++.+.+.|+++|.|+|++...+.. ..+.++++.|.+.
T Consensus 39 ~~~~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~---~~l~~l~~~i~~~ 115 (323)
T PRK07094 39 LRGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAKKAYELGYRTIVLQSGEDPYYTD---EKIADIIKEIKKE 115 (323)
T ss_pred EEEEEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCH---HHHHHHHHHHHcc
Confidence 35679999999999999998866553 333 489999999999999999999999765433332 3577888888654
Q ss_pred CCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEE
Q 013195 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349 (448)
Q Consensus 270 ~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~ 349 (448)
. + ..+.++ ...++++. +.. ++..+ +.++.+|+||+|+++++.|+++++.+++.++++.++++ |+.+.
T Consensus 116 ~---~-l~i~~~---~g~~~~e~--l~~-Lk~aG-~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~--Gi~v~ 182 (323)
T PRK07094 116 L---D-VAITLS---LGERSYEE--YKA-WKEAG-ADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKEL--GYEVG 182 (323)
T ss_pred C---C-ceEEEe---cCCCCHHH--HHH-HHHcC-CCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHc--CCeec
Confidence 1 2 233332 22233322 333 34444 68999999999999999999999999999999999999 99999
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHHHHHH
Q 013195 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415 (448)
Q Consensus 350 ~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~~ 415 (448)
+++|+|+||||.+++.++++++++++++.+.+++|+|.||||+++.+..+.+...+....++.+..
T Consensus 183 ~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp 248 (323)
T PRK07094 183 SGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLP 248 (323)
T ss_pred ceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999999886666655444444444433
No 33
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=99.94 E-value=2.9e-27 Score=192.80 Aligned_cols=92 Identities=42% Similarity=0.683 Sum_probs=84.3
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCC---CCEEEEccccc
Q 013195 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KPLVVAGCVPQ 136 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~---~~vVvgGc~a~ 136 (448)
||||+||||++|++|||.|++.|.+.||++++++++||+++||||||+++|+++++..++++++.+ ++|||+||+||
T Consensus 1 Kv~i~T~GC~~N~~Dse~i~~~l~~~G~~~~~~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq 80 (98)
T PF00919_consen 1 KVYIETLGCQMNQYDSERIASILQAAGYEIVDDPEEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQ 80 (98)
T ss_pred CEEEEECCCcccHHHHHHHHHHHHhcCCeeecccccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCccc
Confidence 699999999999999999999999999999999999999999999999999999999999887655 78999999999
Q ss_pred cchh-hh-cCC-ccEEEc
Q 013195 137 GSRD-LK-ELE-GVSIVG 151 (448)
Q Consensus 137 ~~~e-~~-~~~-~d~vvg 151 (448)
..++ +. ..+ +|.|+|
T Consensus 81 ~~~~~l~~~~p~vd~v~G 98 (98)
T PF00919_consen 81 RYGEELKKEFPEVDLVVG 98 (98)
T ss_pred cChHHHHhhCCCeEEEeC
Confidence 9997 44 445 578887
No 34
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.94 E-value=3.2e-26 Score=229.77 Aligned_cols=209 Identities=18% Similarity=0.295 Sum_probs=166.1
Q ss_pred EEEeCCCCCCCccceeeCccCC-----CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHh
Q 013195 195 ILPINVGCLGACTYCKTKHARG-----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (448)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg-----~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~ 269 (448)
||.|=- |+.+|.||..+...+ .+..+..+++..|++.+....++.|+|.|.+.+.... ..+.++++.+.+.
T Consensus 10 YiHiPF-C~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~L~~---~~l~~ll~~i~~~ 85 (353)
T PRK05904 10 YIHIPF-CQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLND---QLLDILLSTIKPY 85 (353)
T ss_pred EEEeCC-ccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccCCH---HHHHHHHHHHHHh
Confidence 444433 999999999875422 1333345666666654433456788887765554432 3567788888776
Q ss_pred CCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCE-E
Q 013195 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-I 348 (448)
Q Consensus 270 ~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~-i 348 (448)
++ ....+++. .+|..++++. +. +++..+ +++|++|+||+++++|+.|+|+++.+++.++++.++++ |+. +
T Consensus 86 ~~--~~~eitiE-~nP~~lt~e~--l~-~lk~~G-~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~--G~~~v 156 (353)
T PRK05904 86 VD--NNCEFTIE-CNPELITQSQ--IN-LLKKNK-VNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKN--GIYNI 156 (353)
T ss_pred cC--CCCeEEEE-eccCcCCHHH--HH-HHHHcC-CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCcE
Confidence 65 55678887 7999887644 44 344444 79999999999999999999999999999999999999 875 9
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHHHHHHHHHh
Q 013195 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA 416 (448)
Q Consensus 349 ~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l~~~~~~ 416 (448)
+.|+|+|+||||.++++++++++.+++++++.++.|+++|||+++++. .++++...+++..+.++.+.
T Consensus 157 ~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~ 225 (353)
T PRK05904 157 SCDFLYCLPILKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNK 225 (353)
T ss_pred EEEEeecCCCCCHHHHHHHHHHHHhcCCCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999876 57888889999988888873
No 35
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.94 E-value=5.6e-25 Score=214.63 Aligned_cols=196 Identities=20% Similarity=0.313 Sum_probs=156.9
Q ss_pred CCCcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC-CCHHHHHHHHH
Q 013195 189 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIV 267 (448)
Q Consensus 189 ~~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~-~~l~~ll~~l~ 267 (448)
.....+|+.+++||+++|+||+++..+|+.++ ++++++++++.+.+.|+++|+|+++|...+. |.+ ..+.+++++|.
T Consensus 60 ~~~tatfm~i~~gC~~~C~FC~v~~~rg~~~~-~~eei~~~a~~~~~~GlkevvLTsv~~ddl~-d~g~~~l~~li~~I~ 137 (302)
T TIGR00510 60 NHGTATFMILGDICTRRCPFCDVAHGRNPLPP-DPEEPAKLAETIKDMGLKYVVITSVDRDDLE-DGGASHLAECIEAIR 137 (302)
T ss_pred CCCEEEEEecCcCcCCCCCcCCccCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEEeecCCCcc-cccHHHHHHHHHHHH
Confidence 34567899999999999999999988887665 6799999999999999999999998765553 222 46899999998
Q ss_pred HhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCE
Q 013195 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (448)
Q Consensus 268 ~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~ 347 (448)
+..+ ...+++ +.|+... ..+.+..+... + +..+...+|+. +++++.|+|+++.++++++++.+++.+||+.
T Consensus 138 ~~~p---~i~Iev--l~~d~~g-~~e~l~~l~~a-G-~dv~~hnlEt~-~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~ 208 (302)
T TIGR00510 138 EKLP---NIKIET--LVPDFRG-NIAALDILLDA-P-PDVYNHNLETV-ERLTPFVRPGATYRWSLKLLERAKEYLPNLP 208 (302)
T ss_pred hcCC---CCEEEE--eCCcccC-CHHHHHHHHHc-C-chhhcccccch-HHHHHHhCCCCCHHHHHHHHHHHHHhCCCCe
Confidence 7554 233444 4443221 11223333333 3 45677789987 8899999999999999999999999999999
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEec-ee-CCCCcccCCC
Q 013195 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF-YP-RPGTPAARMK 396 (448)
Q Consensus 348 i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~-~p-~pGT~~~~~~ 396 (448)
+.+++|+|| |||++|+.++++++++++++.+.+++| .| .+++|+.++.
T Consensus 209 ~~TgiIVGl-GETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~ 258 (302)
T TIGR00510 209 TKSGIMVGL-GETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYV 258 (302)
T ss_pred ecceEEEEC-CCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccccCC
Confidence 999999999 999999999999999999999999998 45 5777776653
No 36
>PRK12928 lipoyl synthase; Provisional
Probab=99.93 E-value=6.9e-25 Score=213.58 Aligned_cols=193 Identities=19% Similarity=0.279 Sum_probs=152.1
Q ss_pred CCcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC-CCHHHHHHHHHH
Q 013195 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 268 (448)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~-~~l~~ll~~l~~ 268 (448)
....+||.+++||+++|+||+++. |+.+++++++++++++.+.+.|+++|++++.+...+. |.+ ..+.+++++|.+
T Consensus 58 ~~~~tfv~is~gC~~~C~FCa~~~--g~~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~-d~g~~~~~ell~~Ik~ 134 (290)
T PRK12928 58 QGTATFLIMGSICTRRCAFCQVDK--GRPMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLP-DGGAAHFVATIAAIRA 134 (290)
T ss_pred CCEEEEEEecccccCcCCCCCccC--CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCccc-ccCHHHHHHHHHHHHh
Confidence 456789999999999999999987 6677899999999999999999999999997653321 111 358899999987
Q ss_pred hCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEE
Q 013195 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (448)
Q Consensus 269 ~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i 348 (448)
..+ .+++..+.|+.+....+.+..+...+ +..+..++|| ++++++.|+|+++.+++.++++.+++..|++.+
T Consensus 135 ~~p-----~~~I~~ltp~~~~~~~e~L~~l~~Ag--~~i~~hnlEt-~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~ 206 (290)
T PRK12928 135 RNP-----GTGIEVLTPDFWGGQRERLATVLAAK--PDVFNHNLET-VPRLQKAVRRGADYQRSLDLLARAKELAPDIPT 206 (290)
T ss_pred cCC-----CCEEEEeccccccCCHHHHHHHHHcC--chhhcccCcC-cHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcee
Confidence 543 33455556654321112355555443 3345556786 699999999999999999999999999777999
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecee--CCCCcccC
Q 013195 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP--RPGTPAAR 394 (448)
Q Consensus 349 ~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p--~pGT~~~~ 394 (448)
.+++|+|| |||++|+.++++++++++++.+++++|.+ ....|..+
T Consensus 207 ~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~ 253 (290)
T PRK12928 207 KSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQR 253 (290)
T ss_pred cccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceee
Confidence 99999999 99999999999999999999999999976 44444443
No 37
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.93 E-value=7.4e-25 Score=222.83 Aligned_cols=212 Identities=20% Similarity=0.314 Sum_probs=164.5
Q ss_pred EEEEEeCCCCCCCccceeeCcc--CCCccccCHHHHHHHHHHHHHC---CCcEEEEEecCCCCCCCCCCCCHHHHHHHHH
Q 013195 193 VEILPINVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~--rg~~rsr~~e~Iv~ei~~l~~~---G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~ 267 (448)
..||.|-- |+++|+||.++.. .+..+.+.++.+++|++.+... +++.|+|.|++.+.... ..+.++++.+.
T Consensus 3 ~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l~~---~~l~~ll~~i~ 78 (377)
T PRK08599 3 SAYIHIPF-CEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGTPTALSA---EQLERLLTAIH 78 (377)
T ss_pred eEEEEeCC-cCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCCcccCCH---HHHHHHHHHHH
Confidence 46778886 9999999997753 3445667899999999776554 46667776644433222 36788888888
Q ss_pred HhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCE
Q 013195 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (448)
Q Consensus 268 ~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~ 347 (448)
+.++......+.+. ++|..++++. +. +++..+ ++++++|+||+|+++|+.|+|+++.+++.++++.++++ |+.
T Consensus 79 ~~~~~~~~~eit~e-~~p~~l~~e~--l~-~l~~~G-~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~--g~~ 151 (377)
T PRK08599 79 RNLPLSGLEEFTFE-ANPGDLTKEK--LQ-VLKDSG-VNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKA--GFD 151 (377)
T ss_pred HhCCCCCCCEEEEE-eCCCCCCHHH--HH-HHHHcC-CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCC
Confidence 76542233466775 7998887644 43 444444 78999999999999999999999999999999999999 875
Q ss_pred -EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-----CC-CHHHHHHHHHHHHHHHH
Q 013195 348 -IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-----KV-PSAVVKKRSRELTSVFE 415 (448)
Q Consensus 348 -i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-----~v-~~~~~~~R~~~l~~~~~ 415 (448)
++.|+|+|+||||.+++.++++++.+++++++.+++++|+|||++++.. .. +.+...+....+.+...
T Consensus 152 ~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 226 (377)
T PRK08599 152 NISIDLIYALPGQTIEDFKESLAKALALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEME 226 (377)
T ss_pred cEEEeeecCCCCCCHHHHHHHHHHHHccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999998642 12 34555555555555554
No 38
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.93 E-value=2.9e-24 Score=218.22 Aligned_cols=210 Identities=20% Similarity=0.313 Sum_probs=162.8
Q ss_pred EEEeCCCCCCCccceeeCccCC-Ccc-ccC----HHHHHHHHHHHHHC------CCcEEEEEecCCCCCCCCCCCCHHHH
Q 013195 195 ILPINVGCLGACTYCKTKHARG-HLG-SYT----VESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDIGVNLPIL 262 (448)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg-~~r-sr~----~e~Iv~ei~~l~~~------G~~ei~~~~~~~~~yg~d~~~~l~~l 262 (448)
||.|=- |+++|+||.++...+ +.+ +.+ ++.+.+||+...+. .++.|+|.|++.+.... ..+.++
T Consensus 6 YiHiPF-C~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~~---~~l~~l 81 (375)
T PRK05628 6 YVHVPF-CATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLGA---EGLARV 81 (375)
T ss_pred EEEeCC-cCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCCH---HHHHHH
Confidence 444443 999999999865432 222 233 78899999876543 25677777665544433 367888
Q ss_pred HHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 013195 263 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (448)
Q Consensus 263 l~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~ 342 (448)
++.+.+.+......++.+. ++|..++++. +. +++..+ ++++++|+||+++++|+.|+|+++.+++.++++.++++
T Consensus 82 l~~i~~~~~~~~~~e~t~e-~~p~~i~~e~--l~-~l~~~G-~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~ 156 (375)
T PRK05628 82 LDAVRDTFGLAPGAEVTTE-ANPESTSPEF--FA-ALRAAG-FTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAA 156 (375)
T ss_pred HHHHHHhCCCCCCCEEEEE-eCCCCCCHHH--HH-HHHHcC-CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 8888775542233455554 6899887644 43 333444 79999999999999999999999999999999999999
Q ss_pred CCCCE-EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCC------CCCCHHHHHHHHHHHHHHHH
Q 013195 343 VPGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM------KKVPSAVVKKRSRELTSVFE 415 (448)
Q Consensus 343 ~pgi~-i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~------~~v~~~~~~~R~~~l~~~~~ 415 (448)
|+. ++.|+|+|+||||.+++.+|++++.+++++++.++.++++|||++++. +.+++++..+++..+.+...
T Consensus 157 --g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 234 (375)
T PRK05628 157 --GFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLS 234 (375)
T ss_pred --CCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 887 999999999999999999999999999999999999999999999874 23456777788877777665
No 39
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=4.9e-24 Score=220.78 Aligned_cols=214 Identities=17% Similarity=0.224 Sum_probs=166.8
Q ss_pred CcEEEEEeCCCCCCCccceeeCcc--CCCccccCHHHHHHHHHHHHHC------CCcEEEEEecCCCCCCCCCCCCHHHH
Q 013195 191 KFVEILPINVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDIGVNLPIL 262 (448)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~--rg~~rsr~~e~Iv~ei~~l~~~------G~~ei~~~~~~~~~yg~d~~~~l~~l 262 (448)
+...||.|-- |+++|+||.+... .+..+.+.++.+++||+...+. .++.|+|.|++.+.... ..+.+|
T Consensus 61 ~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L~~---~~l~~l 136 (449)
T PRK09058 61 KRLLYIHIPF-CRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALSA---EDLARL 136 (449)
T ss_pred ceEEEEEeCC-cCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccCCH---HHHHHH
Confidence 3455666666 9999999987543 2334566899999999976642 35677776655444332 367888
Q ss_pred HHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 013195 263 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (448)
Q Consensus 263 l~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~ 342 (448)
++.+.+.++......+++. .+|..++++. +.. ++..+ |++++||+||+++++|+.|+|+++.+++.++++.++++
T Consensus 137 l~~i~~~~~l~~~~eitiE-~~p~~~t~e~--l~~-l~~aG-vnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~ 211 (449)
T PRK09058 137 ITALREYLPLAPDCEITLE-GRINGFDDEK--ADA-ALDAG-ANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVAR 211 (449)
T ss_pred HHHHHHhCCCCCCCEEEEE-eCcCcCCHHH--HHH-HHHcC-CCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhC
Confidence 8888877664455678887 7898887644 443 33444 79999999999999999999999999999999999999
Q ss_pred CCC-CEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC---CC----CHHHHHHHHHHHHHHH
Q 013195 343 VPG-MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK---KV----PSAVVKKRSRELTSVF 414 (448)
Q Consensus 343 ~pg-i~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~---~v----~~~~~~~R~~~l~~~~ 414 (448)
| ..++.|+|+|+||||.++++++++++.+++++++.++.++++|||++++.- .+ ++++..+.+....+..
T Consensus 212 --g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L 289 (449)
T PRK09058 212 --DRAAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFL 289 (449)
T ss_pred --CCCcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 8 789999999999999999999999999999999999999999999998641 22 3455555555555554
Q ss_pred H
Q 013195 415 E 415 (448)
Q Consensus 415 ~ 415 (448)
.
T Consensus 290 ~ 290 (449)
T PRK09058 290 A 290 (449)
T ss_pred H
Confidence 4
No 40
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.92 E-value=9.2e-24 Score=207.86 Aligned_cols=192 Identities=17% Similarity=0.313 Sum_probs=144.0
Q ss_pred EEEEeCCCCCCC--------ccceeeCccCCCcc---ccCHHHHHHHHHHHHH----CCCcEEEEEecCCCCCCCCCCCC
Q 013195 194 EILPINVGCLGA--------CTYCKTKHARGHLG---SYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVN 258 (448)
Q Consensus 194 ~~i~isrGC~~~--------CsFC~~~~~rg~~r---sr~~e~Iv~ei~~l~~----~G~~ei~~~~~~~~~yg~d~~~~ 258 (448)
..|-..-+||++ |+||.... .++++ .++.++|.++++...+ .+...++|.|. +++|... ..
T Consensus 20 ~~~~~g~~cpnrdg~~~~~gC~FC~~~~-~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~gg-t~t~l~~--~~ 95 (302)
T TIGR01212 20 ITLHGGFSCPNRDGTKGRGGCTFCNDAS-RPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQAY-TNTYAPV--EV 95 (302)
T ss_pred eecCCCCCCCCCCCCCCCCCcccCCCCC-CccccccccccCCCHHHHHHHHHHHhhccCEEEEEEECC-CcCCCCH--HH
Confidence 345667789984 99998643 23444 3455555555544333 22223556554 4444331 35
Q ss_pred HHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHH
Q 013195 259 LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338 (448)
Q Consensus 259 l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ 338 (448)
+.++++.+.+ .+ ....++++ ++|+.++++..++.+.+...++..++++|+||+++++|+.|+|+++.+++.++++.
T Consensus 96 L~~l~~~i~~-~~--~~~~isi~-trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~~~ai~~ 171 (302)
T TIGR01212 96 LKEMYEQALS-YD--DVVGLSVG-TRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDFACYVDAVKR 171 (302)
T ss_pred HHHHHHHHhC-CC--CEEEEEEE-ecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcChHHHHHHHHHH
Confidence 6777777765 44 55677776 68998876553333333333322689999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCC
Q 013195 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395 (448)
Q Consensus 339 ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~ 395 (448)
++++ |+.+.+++|+|+||||.+++.+|++++.+++++.+.+++++|.|||+++++
T Consensus 172 l~~~--gi~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~ 226 (302)
T TIGR01212 172 ARKR--GIKVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKM 226 (302)
T ss_pred HHHc--CCEEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHH
Confidence 9999 999999999999999999999999999999999999999999999999976
No 41
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=1e-23 Score=214.36 Aligned_cols=210 Identities=20% Similarity=0.307 Sum_probs=156.7
Q ss_pred EEEEeCCCCCCCccceeeCccCCC--ccccCHHHHHHHHHHHHH-CCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhC
Q 013195 194 EILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (448)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~~rg~--~rsr~~e~Iv~ei~~l~~-~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~ 270 (448)
.||.|-- |+++|+||.++...++ .+...++.+++|++.+.. .+++.|+|.|++.+.... ..+..|++.+.. +
T Consensus 6 lYiHiPf-C~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~---~~l~~L~~~i~~-~ 80 (374)
T PRK05799 6 LYIHIPF-CKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLSL---EALEILKETIKK-L 80 (374)
T ss_pred EEEEeCC-ccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCCH---HHHHHHHHHHHh-C
Confidence 4555555 9999999998876553 333458999999986543 357777776654433222 234556666643 4
Q ss_pred CCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCE-EE
Q 013195 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IA 349 (448)
Q Consensus 271 ~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~-i~ 349 (448)
.......+.+. ++|..++++. +. .++..+ +++++||+||+++++|+.|+|+++.+++.++++.++++ |+. ++
T Consensus 81 ~~~~~~eitie-~~p~~~t~e~--l~-~l~~~G-~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~--g~~~v~ 153 (374)
T PRK05799 81 NKKEDLEFTVE-GNPGTFTEEK--LK-ILKSMG-VNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKL--GFNNIN 153 (374)
T ss_pred CCCCCCEEEEE-eCCCcCCHHH--HH-HHHHcC-CCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCcEE
Confidence 32233466665 7898887654 43 344444 78999999999999999999999999999999999999 884 89
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-----CCC-HHHHHHHHHHHHHHHH
Q 013195 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-----KVP-SAVVKKRSRELTSVFE 415 (448)
Q Consensus 350 ~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-----~v~-~~~~~~R~~~l~~~~~ 415 (448)
.|+|+|+||||.+++.++++++.+++++++.++.++|+||||++++. .+| .+...+.+....+...
T Consensus 154 ~dli~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 225 (374)
T PRK05799 154 VDLMFGLPNQTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLK 225 (374)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998642 233 3444444444445444
No 42
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=6.4e-24 Score=213.51 Aligned_cols=183 Identities=14% Similarity=0.218 Sum_probs=149.8
Q ss_pred CCCCccceeeCccC-C-CccccCHHHHHHHHHHHHH----CCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCc
Q 013195 202 CLGACTYCKTKHAR-G-HLGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275 (448)
Q Consensus 202 C~~~CsFC~~~~~r-g-~~rsr~~e~Iv~ei~~l~~----~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~ 275 (448)
|+.+|.||..+... + ..+.+.++.+++||+...+ .+++.|+|.|.+.+.... ..+.++++.|.+.+. ..
T Consensus 10 C~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~---~~l~~ll~~i~~~~~--~~ 84 (350)
T PRK08446 10 CESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSA---KFYEPIFEIISPYLS--KD 84 (350)
T ss_pred ccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCH---HHHHHHHHHHHHhcC--CC
Confidence 99999999876542 2 2455678999999986543 267788887765544433 346788888876543 45
Q ss_pred ceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-EEEEEEEE
Q 013195 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QIATDIIC 354 (448)
Q Consensus 276 ~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi-~i~~~~Iv 354 (448)
..+.+. ++|..+++.. +. .++..+ +++++||+||+++++|+.|+|+++.+++.++++.++++ |+ .++.|+|+
T Consensus 85 ~eitiE-~nP~~~~~e~--l~-~l~~~G-vnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~--g~~~v~iDli~ 157 (350)
T PRK08446 85 CEITTE-ANPNSATKAW--LK-GMKNLG-VNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKA--GFENISIDLIY 157 (350)
T ss_pred ceEEEE-eCCCCCCHHH--HH-HHHHcC-CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCEEEEEeec
Confidence 677776 7999887644 43 344444 79999999999999999999999999999999999999 98 58999999
Q ss_pred eCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC
Q 013195 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396 (448)
Q Consensus 355 G~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~ 396 (448)
|+||||.+++.++++++.+++++++.++.|++.||||+++..
T Consensus 158 GlPgqt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT~l~~~~ 199 (350)
T PRK08446 158 DTPLDNKKLLKEELKLAKELPINHLSAYSLTIEENTPFFEKN 199 (350)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEeccceecCCChhHHhh
Confidence 999999999999999999999999999999999999998754
No 43
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=1.4e-23 Score=214.41 Aligned_cols=211 Identities=16% Similarity=0.227 Sum_probs=160.5
Q ss_pred EEEEeCCCCCCCccceeeCccC-CC-ccc-------cCHHHHHHHHHHHHHC--CCcEEEEEecCCCCCCCCCCCCHHHH
Q 013195 194 EILPINVGCLGACTYCKTKHAR-GH-LGS-------YTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPIL 262 (448)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~~r-g~-~rs-------r~~e~Iv~ei~~l~~~--G~~ei~~~~~~~~~yg~d~~~~l~~l 262 (448)
.||.|=- |+.+|.||.++... |. .+. .-.+.+++||+..... +++.|+|.|++.+.... ..+.++
T Consensus 13 lYiHiPF-C~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~~---~~l~~l 88 (400)
T PRK07379 13 AYIHIPF-CRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSLLSV---EQLERI 88 (400)
T ss_pred EEEEecc-ccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCH---HHHHHH
Confidence 3444433 99999999987431 21 211 1367888888764332 57788887765554432 357888
Q ss_pred HHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 013195 263 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (448)
Q Consensus 263 l~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~ 342 (448)
++.|.+.++..+...+++. ++|..++... +. .++..+ +++++||+||+++++|+.|+|+++.+++.++++.++++
T Consensus 89 l~~i~~~~~~~~~~eit~E-~~P~~lt~e~--l~-~l~~~G-vnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~ 163 (400)
T PRK07379 89 LTTLDQRFGIAPDAEISLE-IDPGTFDLEQ--LQ-GYRSLG-VNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQA 163 (400)
T ss_pred HHHHHHhCCCCCCCEEEEE-eCCCcCCHHH--HH-HHHHCC-CCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHc
Confidence 8888876654345678887 7999887643 43 344444 79999999999999999999999999999999999999
Q ss_pred CCCCE-EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-----C-CCHHHHHHHHHHHHHHHH
Q 013195 343 VPGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-----K-VPSAVVKKRSRELTSVFE 415 (448)
Q Consensus 343 ~pgi~-i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-----~-v~~~~~~~R~~~l~~~~~ 415 (448)
|+. ++.|+|+|+||||.+++++|++++.+++++++.++.+++.|||++++.. . .+++...+.+....+...
T Consensus 164 --G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~ 241 (400)
T PRK07379 164 --GIENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILT 241 (400)
T ss_pred --CCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 986 9999999999999999999999999999999999999999999998752 2 334554555555555544
No 44
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.92 E-value=1.3e-22 Score=199.50 Aligned_cols=295 Identities=20% Similarity=0.280 Sum_probs=202.0
Q ss_pred CCCCcEEEEeecccccch---------HHHHHHHHHHHhcCCCCEEEEccccccchh-------hhcCC--ccEEEcCCc
Q 013195 93 SEEADIWLINTCTVKSPS---------QSAMDTLIAKCKSAKKPLVVAGCVPQGSRD-------LKELE--GVSIVGVQQ 154 (448)
Q Consensus 93 ~~~aDvv~intctv~~~a---------~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e-------~~~~~--~d~vvg~~~ 154 (448)
..++|++++ -|.++.+. -+.+..++..+ .| .-|+||+.+..... ..++. .|+++-..-
T Consensus 60 l~k~d~~V~-I~G~~vPGKYlga~P~tl~E~~~i~~~~--~g-vkilGGP~~~~~~~~gg~~~~~~e~~~~fD~va~gD~ 135 (560)
T COG1031 60 LNKYDLVVF-IAGVTVPGKYLGATPATLEELLRILSIA--DG-VKILGGPAALGSSRGGGRAVEPSEIKAGFDVVASGDV 135 (560)
T ss_pred hhcCCEEEE-EeccccCccccCCCCCCHHHHHHHHHHh--cC-cEEecccccccccccCcccCChhhhccceeEEEeccH
Confidence 467899888 78887642 23334444433 23 56788887765321 11222 355554433
Q ss_pred hhHHHHHHHHHhcCCc----eEeecc-cCCCCCC------CCcccCCCcEEEEEeCCCCCCC----ccceeeCccCCCcc
Q 013195 155 IDRVVEVVEETLKGHE----VRLLHR-KKLPALD------LPKVRRNKFVEILPINVGCLGA----CTYCKTKHARGHLG 219 (448)
Q Consensus 155 ~~~i~~~l~~~~~g~~----~~~~~~-~~~~~~~------~p~~~~~~~~~~i~isrGC~~~----CsFC~~~~~rg~~r 219 (448)
+.-+.+++.+...+.. .+.+.. ..+...- .|.+ .....+-|+++|||++. ||||+.|.. |...
T Consensus 136 Ea~~~dl~~eG~~~~~~~~r~rd~~el~~~A~~GA~vv~qHP~y-p~~vi~EiETyRGC~r~~~ggCSFCtEp~~-g~~~ 213 (560)
T COG1031 136 EAFVYDLFSEGVERAIDPDRFRDYEELDAYAPLGAEVVKQHPNY-PEYVICEIETYRGCPRRVSGGCSFCTEPVR-GRPE 213 (560)
T ss_pred HHHHHHHHhcCCcccCChhhhccHHHHHhhhhccchHHHhCCCC-cceEEEEEeeccCCcccccCCCccccCcCc-CCcc
Confidence 3444555542211110 011100 0000000 0111 11356789999999987 999999975 9999
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEec-CCCCCCCCC-----C----CCHHHHHHHHHHhCCCCCcceEEEeecCCcChh
Q 013195 220 SYTVESLVGRVRTVIADGVKEVWLSSE-DTGAYGRDI-----G----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~~~~~-~~~~yg~d~-----~----~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~ 289 (448)
+|++|+|++|++.|.+.|++.+.|.-| |+++|+.+. . ..+.+|++.+...-| +..-+.+...||..+.
T Consensus 214 ~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnPealekL~~Gir~~AP--~l~tLHiDNaNP~tIa 291 (560)
T COG1031 214 FRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNPEALEKLFRGIRNVAP--NLKTLHIDNANPATIA 291 (560)
T ss_pred cCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCCHHHHHHHHHHHHhhCC--CCeeeeecCCCchhhh
Confidence 999999999999999999999999766 888887652 1 235667777766555 6778888888998775
Q ss_pred HHH---HHHHHHH-hCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHh--------CCCCEEEEEEEEeCC
Q 013195 290 EHL---KEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL--------VPGMQIATDIICGFP 357 (448)
Q Consensus 290 ~~l---~el~~l~-~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~--------~pgi~i~~~~IvG~P 357 (448)
+.- .++.+.. +...--+-..+|+||+++++.+.-|=..|.|++.++++.+.+. +|-+-...+||+|+|
T Consensus 292 ~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~NnL~~spEEvl~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~ 371 (560)
T COG1031 292 RYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNNLNASPEEVLEAVEIVNEVGGGRGYNGLPYLLPGINFVFGLP 371 (560)
T ss_pred cChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhccccCCHHHHHHHHHHHHHhcCccCcCCCccccccceeEecCC
Confidence 433 3333322 2211125678999999999999988899999999999999986 233566779999999
Q ss_pred CCCHHHHHHHHHHHHhc-----CCCeEEEEeceeCCCCcccCC
Q 013195 358 GETDEDFNQTVNLIKEY-----KFPQVHISQFYPRPGTPAARM 395 (448)
Q Consensus 358 gET~ed~~~tl~~i~~l-----~~~~v~i~~~~p~pGT~~~~~ 395 (448)
|||.|.|+.+.+|++++ -+.++++-+..++||||+|.+
T Consensus 372 GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~~~~~ 414 (560)
T COG1031 372 GETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTPMWER 414 (560)
T ss_pred CccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecCCCchhhh
Confidence 99999999999999998 245899999999999999955
No 45
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.91 E-value=3.5e-23 Score=215.12 Aligned_cols=215 Identities=20% Similarity=0.283 Sum_probs=163.8
Q ss_pred CcEEEEEeCCCCCCCccceeeCcc--CC-C-ccccCHHHHHHHHHHHHH------CCCcEEEEEecCCCCCCCCCCCCHH
Q 013195 191 KFVEILPINVGCLGACTYCKTKHA--RG-H-LGSYTVESLVGRVRTVIA------DGVKEVWLSSEDTGAYGRDIGVNLP 260 (448)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~--rg-~-~rsr~~e~Iv~ei~~l~~------~G~~ei~~~~~~~~~yg~d~~~~l~ 260 (448)
....||.|- -||.+|.||.++.. .+ + ......+.+++|++.+.+ .++..|+|.|+..+.... ..+.
T Consensus 163 ~~sLYihIP-FC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~~---~~L~ 238 (488)
T PRK08207 163 EVSIYIGIP-FCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLTA---EELE 238 (488)
T ss_pred ceEEEEecC-CCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCCH---HHHH
Confidence 344566555 49999999998754 12 1 122347888999887643 246678887765544432 3578
Q ss_pred HHHHHHHHhCC-CCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHH
Q 013195 261 ILLNAIVAELP-PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339 (448)
Q Consensus 261 ~ll~~l~~~~~-~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~i 339 (448)
+|++.+.+.++ ..+...+++...+|+.++++. +. .++..+ +++++||+||+++++|+.|+|+++.+++.++++.+
T Consensus 239 ~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~--L~-~Lk~~G-v~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~a 314 (488)
T PRK08207 239 RLLEEIYENFPDVKNVKEFTVEAGRPDTITEEK--LE-VLKKYG-VDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLA 314 (488)
T ss_pred HHHHHHHHhccccCCceEEEEEcCCCCCCCHHH--HH-HHHhcC-CCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 88888877652 123446777766899888654 43 444444 68999999999999999999999999999999999
Q ss_pred HHhCCCC-EEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC---CCC-HHHHHHHHHHHHHHH
Q 013195 340 IELVPGM-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK---KVP-SAVVKKRSRELTSVF 414 (448)
Q Consensus 340 r~~~pgi-~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~---~v~-~~~~~~R~~~l~~~~ 414 (448)
+++ |+ .+++|+|+|+||||.+++.+|++++.+++++++.++.+++.|||++++.. .+| .++..+.+....+..
T Consensus 315 r~~--Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l 392 (488)
T PRK08207 315 REM--GFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWA 392 (488)
T ss_pred HhC--CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHH
Confidence 999 98 89999999999999999999999999999999999999999999999652 334 444445555555555
Q ss_pred H
Q 013195 415 E 415 (448)
Q Consensus 415 ~ 415 (448)
.
T Consensus 393 ~ 393 (488)
T PRK08207 393 K 393 (488)
T ss_pred H
Confidence 5
No 46
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.91 E-value=6.4e-23 Score=208.47 Aligned_cols=210 Identities=15% Similarity=0.191 Sum_probs=163.3
Q ss_pred EEEeCCCCCCCccceeeCccCCC-c-cccCHHHHHHHHHHHHHC----CCcEEEEEecCCCCCCCCCCCCHHHHHHHHHH
Q 013195 195 ILPINVGCLGACTYCKTKHARGH-L-GSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (448)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg~-~-rsr~~e~Iv~ei~~l~~~----G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~ 268 (448)
||.|=- |..+|+||..+..... . ..+..+.+.+||+...+. .+..|+|.|.+.+.... ..+.++++.|.+
T Consensus 8 YiHIPF-C~~kC~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~~---~~L~~ll~~i~~ 83 (380)
T PRK09057 8 YVHWPF-CLAKCPYCDFNSHVRHAIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQP---ETVAALLDAIAR 83 (380)
T ss_pred EEEeCC-cCCcCCCCCCcccCcCcCCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccCCH---HHHHHHHHHHHH
Confidence 443333 9999999998654321 1 123578899999865542 46788887765554432 357888888888
Q ss_pred hCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEE
Q 013195 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (448)
Q Consensus 269 ~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i 348 (448)
.++......+++. ++|..++... +..+. ..+ +++|++|+||+++++|+.|||+++.+++.++++.++++ +..+
T Consensus 84 ~f~~~~~~eit~E-~~P~~i~~e~--L~~l~-~~G-vnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~--~~~v 156 (380)
T PRK09057 84 LWPVADDIEITLE-ANPTSVEAGR--FRGYR-AAG-VNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREI--FPRV 156 (380)
T ss_pred hCCCCCCccEEEE-ECcCcCCHHH--HHHHH-HcC-CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHh--CccE
Confidence 7754344577886 7999887633 44443 444 69999999999999999999999999999999999999 8899
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-----C-CCHHHHHHHHHHHHHHHH
Q 013195 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-----K-VPSAVVKKRSRELTSVFE 415 (448)
Q Consensus 349 ~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-----~-v~~~~~~~R~~~l~~~~~ 415 (448)
+.|+|+|+||+|.+++.++++.+.+++++++.++++++.|||++++.. . .++++..+.+....++..
T Consensus 157 ~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~ 229 (380)
T PRK09057 157 SFDLIYARPGQTLAAWRAELKEALSLAADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITA 229 (380)
T ss_pred EEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998642 2 335556666666666665
No 47
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.91 E-value=5.2e-23 Score=207.89 Aligned_cols=210 Identities=16% Similarity=0.290 Sum_probs=157.5
Q ss_pred EEEeCCCCCCCccceeeCccCCC--ccccCHHHHHHHHHHHHH-CC---CcEEEEEecCCCCCCCCCCCCHHHHHHHHHH
Q 013195 195 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIA-DG---VKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (448)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg~--~rsr~~e~Iv~ei~~l~~-~G---~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~ 268 (448)
||.|=. |+.+|.||........ ....-.+.+++|+....+ .| ++.|+|.|++.+.... ..+.++++.|.+
T Consensus 4 YiHiPF-C~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~~---~~l~~ll~~i~~ 79 (360)
T TIGR00539 4 YIHIPF-CENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLSV---EAFERLFESIYQ 79 (360)
T ss_pred EEEeCC-CcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCCH---HHHHHHHHHHHH
Confidence 344433 9999999987654221 112236777778775433 24 6788887765554433 356778888876
Q ss_pred hCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-E
Q 013195 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-Q 347 (448)
Q Consensus 269 ~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi-~ 347 (448)
.+.......+++. ++|..+++.. +..+ +..+ ++++++|+||+++++|+.|+|.++.+++.++++.++++ |+ .
T Consensus 80 ~~~~~~~~eitie-~np~~lt~e~--l~~l-~~~G-v~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~--G~~~ 152 (360)
T TIGR00539 80 HASLSDDCEITTE-ANPELITAEW--CKGL-KGAG-INRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKS--GIEN 152 (360)
T ss_pred hCCCCCCCEEEEE-eCCCCCCHHH--HHHH-HHcC-CCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHc--CCCe
Confidence 5542345677776 6999887654 4444 3444 79999999999999999999999999999999999999 98 5
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCH-HHHHHHHHHHHHHHH
Q 013195 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPS-AVVKKRSRELTSVFE 415 (448)
Q Consensus 348 i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~-~~~~~R~~~l~~~~~ 415 (448)
++.|+|+|+||||.+++.++++++.+++++++.++.++|.|||++++.. ..|. +...+.+....+...
T Consensus 153 v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~ 222 (360)
T TIGR00539 153 ISLDLMYGLPLQTLNSLKEELKLAKELPINHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILE 222 (360)
T ss_pred EEEeccCCCCCCCHHHHHHHHHHHHccCCCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999865 4443 444444444444433
No 48
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=99.91 E-value=4.8e-23 Score=210.23 Aligned_cols=212 Identities=17% Similarity=0.241 Sum_probs=162.1
Q ss_pred EEEEEeCCCCCCCccceeeCccCCC-----ccccCHHHHHHHHHHHHH----CCCcEEEEEecCCCCCCCCCCCCHHHHH
Q 013195 193 VEILPINVGCLGACTYCKTKHARGH-----LGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILL 263 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg~-----~rsr~~e~Iv~ei~~l~~----~G~~ei~~~~~~~~~yg~d~~~~l~~ll 263 (448)
..||.|=- |..+|.||.++..... ...+-.+.+.+||+.... ..++.|+|.|++.+.... ..+.+++
T Consensus 21 ~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~~---~~L~~ll 96 (394)
T PRK08898 21 SLYVHFPW-CVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSA---AGLDRLL 96 (394)
T ss_pred EEEEEeCC-ccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCCH---HHHHHHH
Confidence 34444444 9999999997654221 113357888889886543 236678887766665533 3678899
Q ss_pred HHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q 013195 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343 (448)
Q Consensus 264 ~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~ 343 (448)
+.|.+.++......+++. .+|..++.+. +..+.+ .+ +++++||+||+|+++|+.|+|.++.+++.++++.+++.
T Consensus 97 ~~i~~~~~~~~~~eit~E-~~p~~~~~e~--L~~l~~-~G-vnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~- 170 (394)
T PRK08898 97 SDVRALLPLDPDAEITLE-ANPGTFEAEK--FAQFRA-SG-VNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKH- 170 (394)
T ss_pred HHHHHhCCCCCCCeEEEE-ECCCCCCHHH--HHHHHH-cC-CCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHh-
Confidence 999888764344678886 6899887633 544444 34 79999999999999999999999999999999999998
Q ss_pred CCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHH-HHHHHHHHHHHHH
Q 013195 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV-VKKRSRELTSVFE 415 (448)
Q Consensus 344 pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~-~~~R~~~l~~~~~ 415 (448)
+..++.|+|+|+||||.+++.++++++.+++++++.++.|++.|||++++.. .+|+++ ..+....+.+...
T Consensus 171 -~~~v~~dlI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~ 243 (394)
T PRK08898 171 -FDNFNLDLMYALPGQTLDEALADVETALAFGPPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLA 243 (394)
T ss_pred -CCceEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999875 455433 3334344444443
No 49
>PRK06256 biotin synthase; Validated
Probab=99.90 E-value=6.2e-23 Score=205.66 Aligned_cols=198 Identities=18% Similarity=0.260 Sum_probs=153.3
Q ss_pred CCCCCCCccceeeCccCC----CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCC
Q 013195 199 NVGCLGACTYCKTKHARG----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 274 (448)
Q Consensus 199 srGC~~~CsFC~~~~~rg----~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~ 274 (448)
|+||+++|.||..+...+ +++.+++++|+++++.+.+.|++++.|++........+ -..+.++++.+.+.. +
T Consensus 65 s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~-~~~~~e~i~~i~~~~---~ 140 (336)
T PRK06256 65 SGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKE-VDQVVEAVKAIKEET---D 140 (336)
T ss_pred CCCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchH-HHHHHHHHHHHHhcC---C
Confidence 899999999999876543 36778999999999999999999998876332221111 024566777776532 1
Q ss_pred cceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE
Q 013195 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354 (448)
Q Consensus 275 ~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~Iv 354 (448)
+.+. ++...++++. +.. ++..+ +..+++++|| |+++++.|+++++.+++.++++.++++ |+.+.+++|+
T Consensus 141 ---i~~~-~~~g~l~~e~--l~~-LkeaG-~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~--Gi~v~~~~I~ 209 (336)
T PRK06256 141 ---LEIC-ACLGLLTEEQ--AER-LKEAG-VDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAA--GIEPCSGGII 209 (336)
T ss_pred ---CcEE-ecCCcCCHHH--HHH-HHHhC-CCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHc--CCeeccCeEE
Confidence 1221 2222344332 333 33444 6789999999 999999999999999999999999999 9999999999
Q ss_pred eCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHHH
Q 013195 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412 (448)
Q Consensus 355 G~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~ 412 (448)
|+ |||.+|+.+++.++++++++.+.++.|.|+||||+++.+.++..+..+....++-
T Consensus 210 Gl-gEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl 266 (336)
T PRK06256 210 GM-GESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRL 266 (336)
T ss_pred eC-CCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 98 9999999999999999999999999999999999998887777776665554333
No 50
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.90 E-value=1e-22 Score=210.11 Aligned_cols=214 Identities=18% Similarity=0.245 Sum_probs=163.9
Q ss_pred CcEEEEEeCCCCCCCccceeeCccCCC---ccccCHHHHHHHHHHHHHC----CCcEEEEEecCCCCCCCCCCCCHHHHH
Q 013195 191 KFVEILPINVGCLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILL 263 (448)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~---~rsr~~e~Iv~ei~~l~~~----G~~ei~~~~~~~~~yg~d~~~~l~~ll 263 (448)
+...||.|=. |+++|+||.++...+. .....++.+++||+.+.+. .+..|.|.|+..+.... ..+.+|+
T Consensus 39 ~~~lYvHIPF-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~~---~~l~~Ll 114 (430)
T PRK08208 39 ALSLYIHIPF-CEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLLNA---AELEKLF 114 (430)
T ss_pred ceEEEEEeCC-ccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCCH---HHHHHHH
Confidence 4456777766 9999999988765432 2344689999999877643 35567776644333322 3567888
Q ss_pred HHHHHhCCCCC-cceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 013195 264 NAIVAELPPDG-STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (448)
Q Consensus 264 ~~l~~~~~~~~-~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~ 342 (448)
+.+.+.++... ..++.+. ++|..+++.. +. +++..+ +++|+||+||+++++|+.|+|+++.+++.++++.++++
T Consensus 115 ~~i~~~~~~~~~~~eitiE-~~P~~lt~e~--l~-~l~~~G-~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~ 189 (430)
T PRK08208 115 DSVERVLGVDLGNIPKSVE-TSPATTTAEK--LA-LLAARG-VNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAA 189 (430)
T ss_pred HHHHHhCCCCCCCceEEEE-eCcCcCCHHH--HH-HHHHcC-CCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHc
Confidence 88876654222 3467776 6898887654 43 333444 78999999999999999999999999999999999999
Q ss_pred CCCCE-EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHHHHHH
Q 013195 343 VPGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415 (448)
Q Consensus 343 ~pgi~-i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~~ 415 (448)
|+. ++.|+|+|+||||.++++++++++.+++++++.++++++.|||+++......++...+.+....+...
T Consensus 190 --g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~ 261 (430)
T PRK08208 190 --GFPILNIDLIYGIPGQTHASWMESLDQALVYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLL 261 (430)
T ss_pred --CCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHH
Confidence 885 78999999999999999999999999999999999999999999987654345555555555555554
No 51
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.90 E-value=7.1e-23 Score=202.32 Aligned_cols=191 Identities=16% Similarity=0.175 Sum_probs=143.9
Q ss_pred cEEEEEeCCCCCC----CccceeeCccCCCccccCHHHHHHHHHHHHHC-CCcE----E-EEEecCCCCCCCCCCCCHHH
Q 013195 192 FVEILPINVGCLG----ACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKE----V-WLSSEDTGAYGRDIGVNLPI 261 (448)
Q Consensus 192 ~~~~i~isrGC~~----~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~-G~~e----i-~~~~~~~~~yg~d~~~~l~~ 261 (448)
....|..|||||+ +|+||.... +..+.++++.|+++++.+.+. +.+. + .|+++.+.....-....+.+
T Consensus 15 ~~~~i~~srGC~~~~~g~C~FC~~~~--~~~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~~ 92 (313)
T TIGR01210 15 SLTIILRTRGCYWAREGGCYMCGYLA--DSSPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRNY 92 (313)
T ss_pred eEEEEEeCCCCCCCCCCcCccCCCCC--CCCCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHHH
Confidence 3456899999999 599997553 335667999999999998875 3331 1 24443222110000123466
Q ss_pred HHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCccc-ccccccCCCCHHHHH-hcCCCCCHHHHHHHHHHH
Q 013195 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS-FLHVPVQSGSDAVLS-AMNREYTLSDFRTVVDTL 339 (448)
Q Consensus 262 ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~-~l~iglES~s~~vLk-~m~R~~t~e~~~~~i~~i 339 (448)
+++.|.+ .+ ...++.+. ++|+.++++. +..+. ..+ |+ +|.+|+||+|+++|+ .|||+++.+++.++++.+
T Consensus 93 i~~~l~~-~~--~~~~i~~e-srpd~i~~e~--L~~l~-~aG-~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~ 164 (313)
T TIGR01210 93 IFEKIAQ-RD--NLKEVVVE-SRPEFIDEEK--LEELR-KIG-VNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELA 164 (313)
T ss_pred HHHHHHh-cC--CcceEEEE-eCCCcCCHHH--HHHHH-HcC-CCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 7777765 32 24566665 6898887644 44444 444 66 799999999999995 899999999999999999
Q ss_pred HHhCCCCEEEEEEEEeCCC----CCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCC
Q 013195 340 IELVPGMQIATDIICGFPG----ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395 (448)
Q Consensus 340 r~~~pgi~i~~~~IvG~Pg----ET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~ 395 (448)
+++ |+.+.++||+|+|+ ||.+++.+|++++..++ +++.+++++|.|||+++++
T Consensus 165 ~~~--Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l~v~~gT~l~~~ 221 (313)
T TIGR01210 165 RKY--GAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVT-DTVSINPTNVQKGTLVEFL 221 (313)
T ss_pred HHc--CCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEECCEEeCCCHHHHH
Confidence 999 99999999999996 55678888999999999 9999999999999988754
No 52
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=2.8e-22 Score=203.90 Aligned_cols=204 Identities=15% Similarity=0.180 Sum_probs=157.3
Q ss_pred CCCCccceeeCccCCC--ccccCHHHHHHHHHHHHH----CCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCc
Q 013195 202 CLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275 (448)
Q Consensus 202 C~~~CsFC~~~~~rg~--~rsr~~e~Iv~ei~~l~~----~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~ 275 (448)
|..+|.||.++..... ....-.+.+.+|++.... ..++.|+|.|.+.+.... ..+.++++.+.+.+.....
T Consensus 21 C~~~C~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~~---~~l~~ll~~i~~~~~~~~~ 97 (390)
T PRK06582 21 CLSKCPYCDFNSHVASTIDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMNP---VIVEGIINKISNLAIIDNQ 97 (390)
T ss_pred CcCcCCCCCCeeccCCCCCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccccCCH---HHHHHHHHHHHHhCCCCCC
Confidence 9999999987654322 112246777888876544 246778887765544432 3567788888775433355
Q ss_pred ceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEe
Q 013195 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355 (448)
Q Consensus 276 ~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG 355 (448)
..+++. ++|..++... +..+ +..+ ++++++|+||+++++|+.|+|+++.+++.++++.+++. +..++.|+|+|
T Consensus 98 ~eitiE-~nP~~~~~e~--l~~l-~~~G-vnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~--~~~v~~DlI~G 170 (390)
T PRK06582 98 TEITLE-TNPTSFETEK--FKAF-KLAG-INRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTI--FPRVSFDLIYA 170 (390)
T ss_pred CEEEEE-eCCCcCCHHH--HHHH-HHCC-CCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHh--CCcEEEEeecC
Confidence 688887 7999887643 4444 3444 69999999999999999999999999999999999998 78999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-----C-CCHHHHHHHHHHHHHHHH
Q 013195 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-----K-VPSAVVKKRSRELTSVFE 415 (448)
Q Consensus 356 ~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-----~-v~~~~~~~R~~~l~~~~~ 415 (448)
+||||.+++.++++.+.+++++++.++.+++.|||+++++. . .++++..+.+....+...
T Consensus 171 lPgqt~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~ 236 (390)
T PRK06582 171 RSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLE 236 (390)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998752 2 334555555566666554
No 53
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.89 E-value=1.1e-21 Score=199.28 Aligned_cols=212 Identities=15% Similarity=0.227 Sum_probs=161.8
Q ss_pred EEEEEeCCCCCCCccceeeCccCC--Ccc-ccCHHHHHHHHHHHHH----CCCcEEEEEecCCCCCCCCCCCCHHHHHHH
Q 013195 193 VEILPINVGCLGACTYCKTKHARG--HLG-SYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNA 265 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg--~~r-sr~~e~Iv~ei~~l~~----~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~ 265 (448)
..||.|=. |+.+|.||....... ... ..-.+.+++||+.... .+++.|+|.|++.+.... ..+.++++.
T Consensus 8 ~lYiHiPF-C~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~~---~~l~~ll~~ 83 (378)
T PRK05660 8 SLYIHIPW-CVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFSA---EAIQRLLDG 83 (378)
T ss_pred EEEEEeCC-ccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCCH---HHHHHHHHH
Confidence 34555555 999999998764322 111 1126678888875322 467888888876655433 367888888
Q ss_pred HHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 013195 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345 (448)
Q Consensus 266 l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pg 345 (448)
+.+.++......+++. ++|..++... +..+. ..+ +++|++|+||+++++|+.|+|+++.++..++++.++++ |
T Consensus 84 l~~~~~~~~~~eit~e-~np~~l~~e~--l~~Lk-~~G-v~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~--G 156 (378)
T PRK05660 84 VRARLPFAPDAEITME-ANPGTVEADR--FVGYQ-RAG-VNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGL--G 156 (378)
T ss_pred HHHhCCCCCCcEEEEE-eCcCcCCHHH--HHHHH-HcC-CCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHc--C
Confidence 8877653334578886 6999887643 44443 444 68999999999999999999999999999999999999 9
Q ss_pred C-EEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCC-HHHHHHHHHHHHHHHH
Q 013195 346 M-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVP-SAVVKKRSRELTSVFE 415 (448)
Q Consensus 346 i-~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~-~~~~~~R~~~l~~~~~ 415 (448)
+ .++.|+|+|+||||.+++.++++++.+++++++.+++++++|||++++.. .+| ++...+.+....+...
T Consensus 157 ~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~ 229 (378)
T PRK05660 157 LRSFNLDLMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLT 229 (378)
T ss_pred CCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHH
Confidence 8 57999999999999999999999999999999999999999999999764 444 4444455555555544
No 54
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=4e-22 Score=201.87 Aligned_cols=207 Identities=16% Similarity=0.246 Sum_probs=149.9
Q ss_pred EEEEeCCCCCCCccceeeCccCCC-c-cccCHHHHHHH-HHHHHH----CCCcEEEEEecCCCCCCCCCCCCHHHHHHHH
Q 013195 194 EILPINVGCLGACTYCKTKHARGH-L-GSYTVESLVGR-VRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (448)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~~rg~-~-rsr~~e~Iv~e-i~~l~~----~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l 266 (448)
.||.|=- |+++|.||........ . ...-++.+++| ++.... ..+..|+|.|.+.+.... ..+.++++.|
T Consensus 9 lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTPs~l~~---~~l~~ll~~i 84 (370)
T PRK06294 9 LYIHIPF-CTKKCHYCSFYTIPYKEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTPSLVPP---ALIQDILKTL 84 (370)
T ss_pred EEEEeCC-ccCcCCCCcCcccCCCccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCccccCCH---HHHHHHHHHH
Confidence 3444433 9999999987653211 1 11124566666 443332 235667776654433321 3566777777
Q ss_pred HHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Q 013195 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346 (448)
Q Consensus 267 ~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi 346 (448)
... ....++++ ++|..+++.. +. .++..+ +++++||+||+++++|+.|+|+++.+++.++++.+++. |+
T Consensus 85 ~~~----~~~eit~E-~~P~~~~~~~--l~-~l~~~G-~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~--g~ 153 (370)
T PRK06294 85 EAP----HATEITLE-ANPENLSESY--IR-ALALTG-INRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEH--GF 153 (370)
T ss_pred HhC----CCCeEEEE-eCCCCCCHHH--HH-HHHHCC-CCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CC
Confidence 542 35678886 7999887644 43 344444 79999999999999999999999999999999999999 98
Q ss_pred -EEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-----CCC-HHHHHHHHHHHHHHHH
Q 013195 347 -QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-----KVP-SAVVKKRSRELTSVFE 415 (448)
Q Consensus 347 -~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-----~v~-~~~~~~R~~~l~~~~~ 415 (448)
.++.|+|+|+||||.+++.++++++.+++++++.++.++|.|||++++.. .+| ++...+.+....+...
T Consensus 154 ~~v~~Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 229 (370)
T PRK06294 154 SNLSIDLIYGLPTQSLSDFIVDLHQAITLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLT 229 (370)
T ss_pred CeEEEEeecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999998642 233 4444455555555444
No 55
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.89 E-value=2.7e-21 Score=190.41 Aligned_cols=206 Identities=18% Similarity=0.221 Sum_probs=154.8
Q ss_pred EEEEEe-CCCCCCCccceeeCccC---C-CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHH
Q 013195 193 VEILPI-NVGCLGACTYCKTKHAR---G-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (448)
Q Consensus 193 ~~~i~i-srGC~~~CsFC~~~~~r---g-~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~ 267 (448)
.+.+.+ |+||+++|.||..+... + ..+.+++++|+++++.+.+.|++.+.+++...... ...+.++++.+.
T Consensus 29 ~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~----~~~~~~~~~~i~ 104 (296)
T TIGR00433 29 CTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATRFCLVASGRGPK----DREFMEYVEAMV 104 (296)
T ss_pred EEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEEecCCCC----hHHHHHHHHHHH
Confidence 345565 99999999999986543 2 36778999999999999989999987765322211 123345566555
Q ss_pred HhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCE
Q 013195 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (448)
Q Consensus 268 ~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~ 347 (448)
+.....+. .+. ++...++++ ..+.++..+ +..+.+|+| +++++++.++++++.+++.++++.++++ |+.
T Consensus 105 ~~~~~~~i---~~~-~~~g~~~~e---~l~~Lk~aG-~~~v~i~~E-~~~~~~~~i~~~~s~~~~~~ai~~l~~~--Gi~ 173 (296)
T TIGR00433 105 QIVEEMGL---KTC-ATLGLLDPE---QAKRLKDAG-LDYYNHNLD-TSQEFYSNIISTHTYDDRVDTLENAKKA--GLK 173 (296)
T ss_pred HHHHhCCC---eEE-ecCCCCCHH---HHHHHHHcC-CCEEEEccc-CCHHHHhhccCCCCHHHHHHHHHHHHHc--CCE
Confidence 43221122 221 233344443 334444444 689999999 8999999999999999999999999999 999
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHHHHH
Q 013195 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414 (448)
Q Consensus 348 i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~ 414 (448)
+.+++|+|+ +||.+++.++++++.+++++.+.++.+.|.|||++++.+.++.++..+.....+.+.
T Consensus 174 v~~~~i~Gl-~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~l 239 (296)
T TIGR00433 174 VCSGGIFGL-GETVEDRIGLALALANLPPESVPINFLVKIKGTPLADNKELSADDALKTIALARIIM 239 (296)
T ss_pred EEEeEEEeC-CCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHC
Confidence 999999998 999999999999999999999999999999999999877666666555555444443
No 56
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.88 E-value=1.4e-21 Score=195.82 Aligned_cols=203 Identities=17% Similarity=0.229 Sum_probs=154.3
Q ss_pred EEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC---------CCCHHHHH
Q 013195 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---------GVNLPILL 263 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~---------~~~l~~ll 263 (448)
..+|.+|+||+.+|+||.++...|..+++++|+|+++++.+.+.|++++.|+|++...+..+. ...+.+++
T Consensus 13 ~~~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i 92 (336)
T PRK06245 13 NVFIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYL 92 (336)
T ss_pred ceeeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHH
Confidence 357899999999999999988888888999999999999999999999999987654443111 02345666
Q ss_pred HHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCC---CCCHHHHHHHHHHHH
Q 013195 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR---EYTLSDFRTVVDTLI 340 (448)
Q Consensus 264 ~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R---~~t~e~~~~~i~~ir 340 (448)
+++.+... . +-.+..+++..+++.. +..+.+. + ..+++.+||+++.+++.|+| +.+.++..++++.++
T Consensus 93 ~~i~~~~~--~--~g~~~~~~~~~lt~e~--i~~Lk~a-g--~~l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~ 163 (336)
T PRK06245 93 YDLCELAL--E--EGLLPHTNAGILTREE--MEKLKEV-N--ASMGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAG 163 (336)
T ss_pred HHHHHHHh--h--cCCCccccCCCCCHHH--HHHHHHh-C--CCCCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHH
Confidence 66654322 1 1112236676666543 4444332 2 35778899999999988865 456788899999999
Q ss_pred HhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC-----CCeEEEEeceeCCCCcccCCCCCCHHHHHHHH
Q 013195 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407 (448)
Q Consensus 341 ~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~-----~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~ 407 (448)
+. |+.+.+++|+|+ |||.+++.+++.+++++. ++.+.+++|+|.||||+..++.++.++..+..
T Consensus 164 ~~--Gi~~~~~~i~G~-gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~i 232 (336)
T PRK06245 164 KL--KIPFTTGILIGI-GETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVV 232 (336)
T ss_pred Hc--CCceeeeeeeEC-CCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHH
Confidence 98 999999999999 999999999999999885 67788999999999999877655555444433
No 57
>PLN02428 lipoic acid synthase
Probab=99.88 E-value=6.6e-21 Score=188.16 Aligned_cols=182 Identities=19% Similarity=0.249 Sum_probs=147.6
Q ss_pred cEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC-CCHHHHHHHHHHhC
Q 013195 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAEL 270 (448)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~-~~l~~ll~~l~~~~ 270 (448)
...++.+++||+++|.||+++..+++.+.+ ++++.+.++.+.+.|.++++|++.+...+ .|.+ ..+.+++++|.+..
T Consensus 102 taT~milg~gCtr~CrFCav~~~~~p~~~d-~~Ep~~vA~~v~~~Glk~vvltSg~rddl-~D~ga~~~~elir~Ir~~~ 179 (349)
T PLN02428 102 TATIMILGDTCTRGCRFCAVKTSRTPPPPD-PDEPENVAEAIASWGVDYVVLTSVDRDDL-PDGGSGHFAETVRRLKQLK 179 (349)
T ss_pred eEEEEEecCCCCCCCCCCcCCCCCCCCCCC-hhhHHHHHHHHHHcCCCEEEEEEcCCCCC-CcccHHHHHHHHHHHHHhC
Confidence 455789999999999999999877666554 77788888888888999999999865444 2322 46888999998754
Q ss_pred CCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCEEE
Q 013195 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-REYTLSDFRTVVDTLIELVPGMQIA 349 (448)
Q Consensus 271 ~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~-R~~t~e~~~~~i~~ir~~~pgi~i~ 349 (448)
+ ++++..+.|+.+.+ +++.+.+..++ +..++.++|+ ++++++.|+ ++.+.+++.++++.+++.+||+.+.
T Consensus 180 P-----~i~Ie~L~pdf~~d--~elL~~L~eAG-~d~i~hnlET-v~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tk 250 (349)
T PLN02428 180 P-----EILVEALVPDFRGD--LGAVETVATSG-LDVFAHNIET-VERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTK 250 (349)
T ss_pred C-----CcEEEEeCccccCC--HHHHHHHHHcC-CCEEccCccC-cHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence 3 55677677765422 22334444444 5789999997 889999999 6899999999999999999999999
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEece
Q 013195 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385 (448)
Q Consensus 350 ~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~ 385 (448)
++||+|| |||++|+.++++++++++++.+.+.+|.
T Consensus 251 Sg~MvGL-GET~Edv~e~l~~Lrelgvd~vtigqyL 285 (349)
T PLN02428 251 TSIMLGL-GETDEEVVQTMEDLRAAGVDVVTFGQYL 285 (349)
T ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCCEEeecccc
Confidence 9999999 9999999999999999999999987774
No 58
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.88 E-value=4.5e-21 Score=197.30 Aligned_cols=189 Identities=17% Similarity=0.223 Sum_probs=141.5
Q ss_pred CcEEEEEeCCCCCCCccceeeCccC-CCcccc-CHHHHHHHHHHHHHCC--CcEEEEEecCCCCCCCCCCCCHHHHHHHH
Q 013195 191 KFVEILPINVGCLGACTYCKTKHAR-GHLGSY-TVESLVGRVRTVIADG--VKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (448)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~r-g~~rsr-~~e~Iv~ei~~l~~~G--~~ei~~~~~~~~~yg~d~~~~l~~ll~~l 266 (448)
+...||.+-- |+++|+||.++... +..+.+ .++.+++||+.+.+.| +..|+|.|++.+.. . ..+.++++.+
T Consensus 52 ~~~LYvHIPF-C~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GGGTPs~l-~---~~L~~ll~~i 126 (433)
T PRK08629 52 KYMLYAHVPF-CHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGGGTTTIL-E---DELAKTLELA 126 (433)
T ss_pred cEEEEEEeCC-ccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECCCccccC-H---HHHHHHHHHH
Confidence 3445555555 99999999987542 222222 4799999999877654 45566666443332 2 3577888888
Q ss_pred HHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC-C
Q 013195 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP-G 345 (448)
Q Consensus 267 ~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~p-g 345 (448)
.+.+. ...++++ ++|+.++++. +. +++.. |+++++|+||+++++|+.|+|.++.++..++++.++.+.. .
T Consensus 127 ~~~f~---i~eis~E-~~P~~lt~e~--L~-~l~~~--vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~~ 197 (433)
T PRK08629 127 KKLFS---IKEVSCE-SDPNHLDPPK--LK-QLKGL--IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLF 197 (433)
T ss_pred HHhCC---CceEEEE-eCcccCCHHH--HH-HHHHh--CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhccC
Confidence 77653 3577776 7999988654 43 33333 7899999999999999999999987666555555554311 3
Q ss_pred CEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccc
Q 013195 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393 (448)
Q Consensus 346 i~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~ 393 (448)
..+++|+|+||||||.+++.++++++.++++++++++++++.|||+..
T Consensus 198 ~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~~t~~~ 245 (433)
T PRK08629 198 PIINVDLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTRKS 245 (433)
T ss_pred CeEEEEEEccCCCCCHHHHHHHHHHHHhCCCCEEEEccceeccCchhh
Confidence 468899999999999999999999999999999999999999999754
No 59
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.87 E-value=2.5e-21 Score=179.61 Aligned_cols=194 Identities=36% Similarity=0.550 Sum_probs=153.7
Q ss_pred EEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCC-----CcEEEEEecCCCCCCCCCCCCHHHHHHHHH
Q 013195 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG-----VKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G-----~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~ 267 (448)
.+++.+++||+++|.||..+...|+.+..+++++.++++.+.+.| .+.+.|.|++...... ..+.++++.+.
T Consensus 2 ~~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~---~~~~~~~~~~~ 78 (216)
T smart00729 2 LALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSP---EQLEELLEAIR 78 (216)
T ss_pred ccEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCCH---HHHHHHHHHHH
Confidence 467899999999999999876555566778999999999997665 3566676655444321 13678888887
Q ss_pred HhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC-C
Q 013195 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG-M 346 (448)
Q Consensus 268 ~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pg-i 346 (448)
+.........+.+. +++..+++.. +..+.+. + +..+.++++|+++++++.++++.+.+++.++++.++++ | +
T Consensus 79 ~~~~~~~~~~~~~~-tn~~~~~~~~--~~~l~~~-~-~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--g~~ 151 (216)
T smart00729 79 EILGLADDVEITIE-TRPGTLTEEL--LEALKEA-G-VNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREA--GPI 151 (216)
T ss_pred HhCCCCCCeEEEEE-eCcccCCHHH--HHHHHHc-C-CCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHh--CCc
Confidence 65321002345554 4655555433 4444433 3 35899999999999999999999999999999999999 8 8
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC
Q 013195 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396 (448)
Q Consensus 347 ~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~ 396 (448)
.+.+.+|+|+|+++.+++.++++++.+++++.+.+++|.|.|||++++++
T Consensus 152 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~t~~~~~~ 201 (216)
T smart00729 152 KVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLY 201 (216)
T ss_pred ceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCCCChHHHhc
Confidence 99999999999999999999999999999999999999999999999887
No 60
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.87 E-value=1.6e-20 Score=195.32 Aligned_cols=212 Identities=19% Similarity=0.280 Sum_probs=161.4
Q ss_pred EEEEEeCCCCCCCccceeeCccCCC---ccccCHHHHHHHHHHHHH-----CCCcEEEEEecCCCCCCCCCCCCHHHHHH
Q 013195 193 VEILPINVGCLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIA-----DGVKEVWLSSEDTGAYGRDIGVNLPILLN 264 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg~---~rsr~~e~Iv~ei~~l~~-----~G~~ei~~~~~~~~~yg~d~~~~l~~ll~ 264 (448)
..||.|=. |+++|.||..+...+. .+...++.+++|++.+.. .+++.|+|.|++.+.... ..+.++++
T Consensus 51 ~lYiHiPF-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~~---~~l~~ll~ 126 (455)
T TIGR00538 51 SLYVHIPF-CHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLSP---EQISRLMK 126 (455)
T ss_pred EEEEEeCC-ccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCCH---HHHHHHHH
Confidence 34555544 9999999998765432 233458999999987643 378888998866554333 35788888
Q ss_pred HHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q 013195 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344 (448)
Q Consensus 265 ~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~p 344 (448)
.+.+.++......+.+. ++|..+++.. +. .++..+ +++++||+||+++++|+.|+|+++.+++.++++.++++
T Consensus 127 ~i~~~~~~~~~~eitie-~np~~l~~e~--l~-~lk~~G-~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~-- 199 (455)
T TIGR00538 127 LIRENFPFNADAEISIE-IDPRYITKDV--ID-ALRDEG-FNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREA-- 199 (455)
T ss_pred HHHHhCCCCCCCeEEEE-eccCcCCHHH--HH-HHHHcC-CCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--
Confidence 88876543234567776 7898887644 43 344444 78999999999999999999999999999999999999
Q ss_pred CCE-EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCC-cccCC-C--C-CCHHHHHHHHHHHHHHHH
Q 013195 345 GMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT-PAARM-K--K-VPSAVVKKRSRELTSVFE 415 (448)
Q Consensus 345 gi~-i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT-~~~~~-~--~-v~~~~~~~R~~~l~~~~~ 415 (448)
|+. +..|+|+|+||||.+++.++++++.+++++++.++.|++.|++ +.... . . .+++++.+.+..+.+...
T Consensus 200 G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~ 276 (455)
T TIGR00538 200 GFTSINIDLIYGLPKQTKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLT 276 (455)
T ss_pred CCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHH
Confidence 984 8999999999999999999999999999999999999998875 33321 1 2 345665666666665554
No 61
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.86 E-value=2.3e-20 Score=193.83 Aligned_cols=213 Identities=16% Similarity=0.230 Sum_probs=159.7
Q ss_pred cEEEEEeCCCCCCCccceeeCccCC-C--ccccCHHHHHHHHHHHHHC-----CCcEEEEEecCCCCCCCCCCCCHHHHH
Q 013195 192 FVEILPINVGCLGACTYCKTKHARG-H--LGSYTVESLVGRVRTVIAD-----GVKEVWLSSEDTGAYGRDIGVNLPILL 263 (448)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg-~--~rsr~~e~Iv~ei~~l~~~-----G~~ei~~~~~~~~~yg~d~~~~l~~ll 263 (448)
...||.|-. |+++|.||....... + .....++.+++||+...+. ++..|+|.|++.+.... ..+.+|+
T Consensus 51 ~~LYvHIPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~~---~~l~~ll 126 (453)
T PRK13347 51 VSLYLHVPF-CRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILNP---DQFERLM 126 (453)
T ss_pred eEEEEEeCC-ccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCCH---HHHHHHH
Confidence 456777777 999999998764322 1 1112368999999876542 56788888876655533 3678899
Q ss_pred HHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q 013195 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343 (448)
Q Consensus 264 ~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~ 343 (448)
+.|.+.++......+.+. ++|..++++. +. +++..+ +++++||+||+++++|+.|+|.++.+++.++++.++++
T Consensus 127 ~~i~~~~~~~~~~e~tie-~~p~~lt~e~--l~-~L~~~G-~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~- 200 (453)
T PRK13347 127 AALRDAFDFAPEAEIAVE-IDPRTVTAEM--LQ-ALAALG-FNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAA- 200 (453)
T ss_pred HHHHHhCCCCCCceEEEE-eccccCCHHH--HH-HHHHcC-CCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc-
Confidence 998876653334577776 7999887654 43 344444 79999999999999999999999999999999999999
Q ss_pred CCCE-EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccC-C--C-CC-CHHHHHHHHHHHHHHHH
Q 013195 344 PGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-M--K-KV-PSAVVKKRSRELTSVFE 415 (448)
Q Consensus 344 pgi~-i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~-~--~-~v-~~~~~~~R~~~l~~~~~ 415 (448)
|+. ++.|+|+|+||||.+++.+|++++.+++++++.++.|+..|++.... . . .+ +.+++.+.+..+.+...
T Consensus 201 -G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~ 277 (453)
T PRK13347 201 -GFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLL 277 (453)
T ss_pred -CCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHH
Confidence 884 99999999999999999999999999999999999998666643221 1 1 23 34555555555555554
No 62
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.86 E-value=3.2e-20 Score=192.90 Aligned_cols=210 Identities=18% Similarity=0.226 Sum_probs=157.6
Q ss_pred EEEeCCCCCCCccceeeCccCCC---ccccCHHHHHHHHHHHHHC-----CCcEEEEEecCCCCCCCCCCCCHHHHHHHH
Q 013195 195 ILPINVGCLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIAD-----GVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (448)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg~---~rsr~~e~Iv~ei~~l~~~-----G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l 266 (448)
||.|-. |+++|+||..+...+. ...+.++.+++|++.+.+. ++..|+|.|+..+.... ..+.++++.+
T Consensus 53 YvHIPF-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~~---~~l~~ll~~l 128 (453)
T PRK09249 53 YVHIPF-CRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLSP---EQLRRLMALL 128 (453)
T ss_pred EEEeCC-ccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCCH---HHHHHHHHHH
Confidence 444433 9999999987654332 2234578999999876652 47788887765544322 3678888888
Q ss_pred HHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Q 013195 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346 (448)
Q Consensus 267 ~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi 346 (448)
.+.++......+.+. ++|..++++. +. +++..+ |++++||+||+++++|+.|+|+++.+++.++++.++++ |+
T Consensus 129 ~~~~~~~~~~e~tie-~np~~lt~e~--l~-~l~~aG-~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~--G~ 201 (453)
T PRK09249 129 REHFNFAPDAEISIE-IDPRELDLEM--LD-ALRELG-FNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAAREL--GF 201 (453)
T ss_pred HHhCCCCCCCEEEEE-ecCCcCCHHH--HH-HHHHcC-CCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHc--CC
Confidence 876543234577776 7998887654 43 444444 79999999999999999999999999999999999999 98
Q ss_pred -EEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccC--C-C-C-CCHHHHHHHHHHHHHHHH
Q 013195 347 -QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR--M-K-K-VPSAVVKKRSRELTSVFE 415 (448)
Q Consensus 347 -~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~--~-~-~-v~~~~~~~R~~~l~~~~~ 415 (448)
.+.+|+|+|+||||.++++++++++.+++++++.++.|++.|++.... . + . .+.+...+....+.+...
T Consensus 202 ~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 276 (453)
T PRK09249 202 TSINIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLT 276 (453)
T ss_pred CcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999777763221 1 1 2 344444455555555544
No 63
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.85 E-value=1.8e-20 Score=185.51 Aligned_cols=201 Identities=16% Similarity=0.254 Sum_probs=149.1
Q ss_pred EEEEeCCCCCCCccceeeCccCC--CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCC
Q 013195 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (448)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~ 271 (448)
.+|.+|+||+++|.||......+ +.+.+++|+|+++++...+.|+++|.|+|++...... ..+.++++.|.+..+
T Consensus 7 ~~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~---~~~~~i~~~Ik~~~~ 83 (309)
T TIGR00423 7 RNINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDI---EYYEELFRAIKQEFP 83 (309)
T ss_pred eeecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCH---HHHHHHHHHHHHHCC
Confidence 36889999999999999875443 3557899999999999999999999999764433322 346888888887643
Q ss_pred CCCcceEEEeecCCcChh-------HHHHHHHHHHhCCCccccc-ccccCCCCHHHHHhc-CCCCCHHHHHHHHHHHHHh
Q 013195 272 PDGSTMLRIGMTNPPFIL-------EHLKEIAEVLRHPCVYSFL-HVPVQSGSDAVLSAM-NREYTLSDFRTVVDTLIEL 342 (448)
Q Consensus 272 ~~~~~~iri~~~~p~~i~-------~~l~el~~l~~~~~~~~~l-~iglES~s~~vLk~m-~R~~t~e~~~~~i~~ir~~ 342 (448)
...+..+ .+..+. -..++..+.++.++ +..+ +.|+|++++++++.+ +++.+.+++.++++.+++.
T Consensus 84 --~i~~~~~---s~~e~~~~~~~~g~~~~e~l~~LkeAG-l~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~ 157 (309)
T TIGR00423 84 --DVHIHAF---SPMEVYFLAKNEGLSIEEVLKRLKKAG-LDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRL 157 (309)
T ss_pred --CceEEec---CHHHHHHHHHHcCCCHHHHHHHHHHcC-CCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHc
Confidence 2222222 221110 00123334444555 4566 579999999999888 6678999999999999999
Q ss_pred CCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeC----CCCc-ccCC--CCCCHHHHHHH
Q 013195 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTP-AARM--KKVPSAVVKKR 406 (448)
Q Consensus 343 ~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~----pGT~-~~~~--~~v~~~~~~~R 406 (448)
|+.+.+.+|+|+| ||.+|+.+++.++++++.+..++..|.|. +||| +... +..+..+..+.
T Consensus 158 --Gi~~~s~~iiG~~-Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~ 225 (309)
T TIGR00423 158 --GIPTTATMMFGHV-ENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKV 225 (309)
T ss_pred --CCCceeeEEecCC-CCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHH
Confidence 9999999999986 89999999999999999888888777775 5888 6543 44555554444
No 64
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.85 E-value=3.1e-20 Score=184.69 Aligned_cols=198 Identities=19% Similarity=0.257 Sum_probs=147.3
Q ss_pred EEEEEeCCCCCCCccceeeCccCCC--ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCC------------CCC-CC
Q 013195 193 VEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG------------RDI-GV 257 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg~--~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg------------~d~-~~ 257 (448)
..+|++|+||+++|+||.++...|. .+.+++++|+++++.+.+.|++++.+++..-.... .+. ..
T Consensus 5 n~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~ 84 (322)
T TIGR03550 5 NVFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLE 84 (322)
T ss_pred eEEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHH
Confidence 4578999999999999999887775 45889999999999999999999998854321111 000 02
Q ss_pred CHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCC----CHHHHH
Q 013195 258 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY----TLSDFR 333 (448)
Q Consensus 258 ~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~----t~e~~~ 333 (448)
.+.++++.+.+... + +..+++..+++.. +..+. ..+. .+++.+||+++.+++.+++.+ +.+++.
T Consensus 85 ~~~~~~~~i~~e~~------~-~~~~~~g~lt~e~--l~~Lk-~aG~--~~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l 152 (322)
T TIGR03550 85 YLRELCELALEETG------L-LPHTNPGVMSRDE--LARLK-PVNA--SMGLMLETTSERLCKGEAHYGSPGKDPAVRL 152 (322)
T ss_pred HHHHHHHHHHHhcC------C-ccccCCCCCCHHH--HHHHH-hhCC--CCCcchhhhccccccccccCCCCCCCHHHHH
Confidence 34555565654321 1 2224555555533 44333 3332 468889999999887776654 467899
Q ss_pred HHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC-----CCeEEEEeceeCCCCcccCCCCCCHHHHHH
Q 013195 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGTPAARMKKVPSAVVKK 405 (448)
Q Consensus 334 ~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~-----~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~ 405 (448)
++++.+++. |+.+++++|+|+ |||++|+.+++.++++++ +..+.+++|.|.||||+...+.++..+..+
T Consensus 153 ~~i~~a~~~--Gi~~~s~~i~G~-gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr 226 (322)
T TIGR03550 153 ETIEDAGRL--KIPFTTGILIGI-GETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLR 226 (322)
T ss_pred HHHHHHHHc--CCCccceeeEeC-CCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHH
Confidence 999999999 999999999997 999999999999999997 667777999999999998877666654433
No 65
>PRK06267 hypothetical protein; Provisional
Probab=99.84 E-value=1.5e-19 Score=181.45 Aligned_cols=194 Identities=18% Similarity=0.250 Sum_probs=148.9
Q ss_pred EEEEEeCCCCC--CCccceeeCccCC-----CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHH
Q 013195 193 VEILPINVGCL--GACTYCKTKHARG-----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 265 (448)
Q Consensus 193 ~~~i~isrGC~--~~CsFC~~~~~rg-----~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~ 265 (448)
.+.|..|.+|+ ++|+||..+...+ .++.+++|+|++|++.+.+.|++.+.++|... +.. ..+.++++.
T Consensus 28 ~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~Gv~~~~lsgG~~--~~~---~el~~i~e~ 102 (350)
T PRK06267 28 ERALFLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIGWKLEFISGGYG--YTT---EEINDIAEM 102 (350)
T ss_pred EEeeeecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcCCCEEEEecCCC--CCH---HHHHHHHHH
Confidence 45677899999 9999998875432 35678999999999999999999877776532 221 346677777
Q ss_pred HHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 013195 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345 (448)
Q Consensus 266 l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pg 345 (448)
+...-. ...+++++.++. .++. .... ..+..++||+++++++.++++++.+++.++++.++++ |
T Consensus 103 I~~~~~--~~~~~s~G~~d~-------~~~~-~~~l----~Gv~g~~ET~~~~~~~~i~~~~s~ed~~~~l~~ak~a--G 166 (350)
T PRK06267 103 IAYIQG--CKQYLNVGIIDF-------LNIN-LNEI----EGVVGAVETVNPKLHREICPGKPLDKIKEMLLKAKDL--G 166 (350)
T ss_pred HHHhhC--CceEeecccCCH-------HHHh-hccc----cCceeeeecCCHHHHHhhCCCCCHHHHHHHHHHHHHc--C
Confidence 754311 113444443322 1111 1122 2345789999999999999999999999999999999 9
Q ss_pred CEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCCCCCHHHHHHHHH
Q 013195 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408 (448)
Q Consensus 346 i~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~ 408 (448)
+.+.+.+|+|+ |||.+|+.++++++++++++.+.+++|+|.||||+...+.++.++..+-..
T Consensus 167 i~v~~g~IiGl-gEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia 228 (350)
T PRK06267 167 LKTGITIILGL-GETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLEYMNWVS 228 (350)
T ss_pred CeeeeeEEEeC-CCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHH
Confidence 99999999996 999999999999999999999999999999999999877766655544433
No 66
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=99.84 E-value=1.4e-19 Score=184.94 Aligned_cols=205 Identities=22% Similarity=0.308 Sum_probs=160.5
Q ss_pred CCCCccceeeCccCCC---ccccCHHHHHHHHHHHHHCC-----CcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCC-C
Q 013195 202 CLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIADG-----VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP-P 272 (448)
Q Consensus 202 C~~~CsFC~~~~~rg~---~rsr~~e~Iv~ei~~l~~~G-----~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~-~ 272 (448)
|...|.||..+....+ ....-.+.+.+|++...... ++.|+|.|+..+.... ..+..++..|.+.++ .
T Consensus 44 C~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~~---~~l~~ll~~l~~~~~~~ 120 (416)
T COG0635 44 CVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLSP---EQLERLLKALRELFNDL 120 (416)
T ss_pred ccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCCH---HHHHHHHHHHHHhcccC
Confidence 9999999988754321 12223678888888776642 5567776654443322 467888888888773 3
Q ss_pred CCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-EEEEE
Q 013195 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QIATD 351 (448)
Q Consensus 273 ~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi-~i~~~ 351 (448)
.....+.+. ++|..++... +.. ++..+ ++++++||||+++++|+.++|.++.++..++++.+++. |+ .++.|
T Consensus 121 ~~~~EitiE-~nP~~~~~e~--~~~-l~~~G-vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~--g~~~in~D 193 (416)
T COG0635 121 DPDAEITIE-ANPGTVEAEK--FKA-LKEAG-VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKA--GFTSINID 193 (416)
T ss_pred CCCceEEEE-eCCCCCCHHH--HHH-HHHcC-CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHc--CCCcEEEE
Confidence 355899998 6999887643 433 33444 58999999999999999999999999999999999998 75 79999
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-C---CC-HHHHHHHHHHHHHHHHh
Q 013195 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-K---VP-SAVVKKRSRELTSVFEA 416 (448)
Q Consensus 352 ~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~---v~-~~~~~~R~~~l~~~~~~ 416 (448)
+|+|+|++|.+++.++++.+.+++++++.++.|+..|+|++++.. . +| ++.+.++.+...+...+
T Consensus 194 LIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~ 263 (416)
T COG0635 194 LIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEK 263 (416)
T ss_pred eecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999765 3 45 45555666666666653
No 67
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.83 E-value=1.8e-19 Score=180.82 Aligned_cols=189 Identities=17% Similarity=0.298 Sum_probs=145.0
Q ss_pred EEEeCCCCCCCccceeeCccCC--CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCC
Q 013195 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (448)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~ 272 (448)
.|.+|+||+++|.||......+ +...+++|+|+++++.+.+.|+++|.|+|++...+.. ..+.++++.|.+..+
T Consensus 42 ~i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~---~~~~~i~~~Ik~~~~- 117 (343)
T TIGR03551 42 NINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDG---DFYLDILRAVKEEVP- 117 (343)
T ss_pred ccccccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 4778999999999999865443 2234799999999999999999999999765433322 346788888887644
Q ss_pred CCcceEEEee-------cCCcChhHHHHHHHHHHhCCCcccccc-cccCCCCHHHHHhcCCC-CCHHHHHHHHHHHHHhC
Q 013195 273 DGSTMLRIGM-------TNPPFILEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELV 343 (448)
Q Consensus 273 ~~~~~iri~~-------~~p~~i~~~l~el~~l~~~~~~~~~l~-iglES~s~~vLk~m~R~-~t~e~~~~~i~~ir~~~ 343 (448)
+..+..++- .+....++ +.+.+|. .++ +.+++ .+.|++++++++.+.++ .+.+++.++++.++++
T Consensus 118 -~i~~~~~t~~ei~~~~~~~g~~~~--e~l~~Lk-eAG-l~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~- 191 (343)
T TIGR03551 118 -GMHIHAFSPMEVYYGARNSGLSVE--EALKRLK-EAG-LDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKL- 191 (343)
T ss_pred -CceEEecCHHHHHHHHHHcCCCHH--HHHHHHH-HhC-cccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHc-
Confidence 333322110 01112222 2244443 344 56666 57899999999999986 5999999999999999
Q ss_pred CCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCC----CCcccCC
Q 013195 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP----GTPAARM 395 (448)
Q Consensus 344 pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~p----GT~~~~~ 395 (448)
|+.+.+.+|+|+| ||.+|+.+++.++++++.+..++..|.|+| |||++..
T Consensus 192 -Gi~v~s~~i~G~~-Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~ 245 (343)
T TIGR03551 192 -GIPTTATIMYGHV-ETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLK 245 (343)
T ss_pred -CCcccceEEEecC-CCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccccc
Confidence 9999999999986 999999999999999999999999999987 9999853
No 68
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.83 E-value=3.2e-19 Score=166.21 Aligned_cols=191 Identities=20% Similarity=0.354 Sum_probs=139.9
Q ss_pred EEEeCCCCCCC--------ccceeeCccC--CCccccCH-HHHHHHHHHHHHC--CCcEEEEEecCCCCCCCCCCCCHHH
Q 013195 195 ILPINVGCLGA--------CTYCKTKHAR--GHLGSYTV-ESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPI 261 (448)
Q Consensus 195 ~i~isrGC~~~--------CsFC~~~~~r--g~~rsr~~-e~Iv~ei~~l~~~--G~~ei~~~~~~~~~yg~d~~~~l~~ 261 (448)
.|-..-.||++ |+||+..... .-.+..|+ +++-++++.+.++ +.+.+...-.-+++|.. .+
T Consensus 27 ~ld~GF~CPNRDGti~rGGCtFC~~~g~~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~kyiaYFQ~~TNTyAp------ve 100 (312)
T COG1242 27 TLDGGFSCPNRDGTIGRGGCTFCSVAGSGDFAGQPKISIAEQFKEQAERMHKKWKRGKYIAYFQAYTNTYAP------VE 100 (312)
T ss_pred eccCCCCCCCCCCcccCCceeeecCCCCCccccCcccCHHHHHHHHHHHHHHhhcCCcEEEEEeccccccCc------HH
Confidence 34455567765 9999765321 11233344 3444444444443 33443332224555643 45
Q ss_pred HHHHHHH-hCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Q 013195 262 LLNAIVA-ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340 (448)
Q Consensus 262 ll~~l~~-~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir 340 (448)
.|+++.+ .+...+...+.++ ++|+.+.++..++.+-+... ..-++.+|+||.++++|+.+||+|+.+.|.+++.++|
T Consensus 101 vLre~ye~aL~~~~VVGLsIg-TRPDClpd~VldlL~e~~~r-~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~r 178 (312)
T COG1242 101 VLREMYEQALSEAGVVGLSIG-TRPDCLPDDVLDLLAEYNKR-YEVWVELGLQTAHDKTLKRINRGHDFACYVDAVKRLR 178 (312)
T ss_pred HHHHHHHHHhCcCCeeEEeec-CCCCCCcHHHHHHHHHHhhh-eEEEEEeccchhhHHHHHHHhcccchHHHHHHHHHHH
Confidence 5655543 2333467788887 78988876654444433332 4568999999999999999999999999999999999
Q ss_pred HhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCC
Q 013195 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395 (448)
Q Consensus 341 ~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~ 395 (448)
+. ||.+.+++|+|+||||.+++.+|++.+..++++-+-++++....|||+.++
T Consensus 179 kr--gIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~ 231 (312)
T COG1242 179 KR--GIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKM 231 (312)
T ss_pred Hc--CCeEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHHHH
Confidence 99 999999999999999999999999999999999999999999999999875
No 69
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.83 E-value=3e-19 Score=186.03 Aligned_cols=186 Identities=21% Similarity=0.266 Sum_probs=145.4
Q ss_pred CCCCC-Cccceee-------Ccc---------CC-CccccCHHHHHHHHHHHHHCC--C--cEEEEEecCCCCCCCCCCC
Q 013195 200 VGCLG-ACTYCKT-------KHA---------RG-HLGSYTVESLVGRVRTVIADG--V--KEVWLSSEDTGAYGRDIGV 257 (448)
Q Consensus 200 rGC~~-~CsFC~~-------~~~---------rg-~~rsr~~e~Iv~ei~~l~~~G--~--~ei~~~~~~~~~yg~d~~~ 257 (448)
--||+ .|.||-- |.. |+ +.+..|..++.++++++...| + -|+.|.|++++++..+.
T Consensus 76 ~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTft~l~~~y-- 153 (522)
T TIGR01211 76 HRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTFPARDLDY-- 153 (522)
T ss_pred ccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECCCcccCCHHH--
Confidence 35995 7999952 221 11 245668899999999999865 3 25689998988886653
Q ss_pred CHHHHHHHHHHhCCC----------------------CCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCC
Q 013195 258 NLPILLNAIVAELPP----------------------DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 315 (448)
Q Consensus 258 ~l~~ll~~l~~~~~~----------------------~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~ 315 (448)
...+++.+...++. .....++++ ++|+.+++.. +..|.+ .+ ++++++|+||+
T Consensus 154 -~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiE-tRPD~i~~e~--L~~L~~-~G-~~rVslGVQS~ 227 (522)
T TIGR01211 154 -QEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIE-TRPDYCREEH--IDRMLK-LG-ATRVELGVQTI 227 (522)
T ss_pred -HHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEE-EcCCcCCHHH--HHHHHH-cC-CCEEEEECccC
Confidence 33444444433321 012456665 5999887644 444443 33 68999999999
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHh---cCCCeEEEEeceeCCCCcc
Q 013195 316 SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE---YKFPQVHISQFYPRPGTPA 392 (448)
Q Consensus 316 s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~---l~~~~v~i~~~~p~pGT~~ 392 (448)
++++|+.|||+++.+++.++++.++++ |+.+.+++|+|+||||.+++.+|++.+.+ ++++.+.++++.+.|||++
T Consensus 228 ~d~VL~~inRght~~~v~~Ai~~lr~~--G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L 305 (522)
T TIGR01211 228 YNDILERTKRGHTVRDVVEATRLLRDA--GLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTEL 305 (522)
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHc--CCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHH
Confidence 999999999999999999999999999 99999999999999999999999999885 8999999999999999999
Q ss_pred cCC
Q 013195 393 ARM 395 (448)
Q Consensus 393 ~~~ 395 (448)
+++
T Consensus 306 ~~~ 308 (522)
T TIGR01211 306 YEL 308 (522)
T ss_pred HHH
Confidence 863
No 70
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.81 E-value=5e-19 Score=178.02 Aligned_cols=199 Identities=17% Similarity=0.203 Sum_probs=150.2
Q ss_pred EEEeCCCCCCCccceeeCccCC---CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCC
Q 013195 195 ILPINVGCLGACTYCKTKHARG---HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (448)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg---~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~ 271 (448)
+|..|.||+++|+||.+....+ +++ +++|+|+++++...+.|++++.+++.+...+.. ..+.++++.|.+.++
T Consensus 51 ~in~Tn~C~~~C~FCa~~~~~~~~~~y~-l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~---~~~~e~i~~Ik~~~p 126 (351)
T TIGR03700 51 HLNYTNICVNGCAFCAFQRERGEPGAYA-MSLEEIVARVKEAYAPGATEVHIVGGLHPNLPF---EWYLDMIRTLKEAYP 126 (351)
T ss_pred CcccccccccCCccCceeCCCCCcccCC-CCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCH---HHHHHHHHHHHHHCC
Confidence 5788999999999999875444 233 699999999999999999999998754332211 357788888887654
Q ss_pred CCCcceEEEeecCCcChh-------HHHHHHHHHHhCCCcccccc-cccCCCCHHHHHhcCCC-CCHHHHHHHHHHHHHh
Q 013195 272 PDGSTMLRIGMTNPPFIL-------EHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIEL 342 (448)
Q Consensus 272 ~~~~~~iri~~~~p~~i~-------~~l~el~~l~~~~~~~~~l~-iglES~s~~vLk~m~R~-~t~e~~~~~i~~ir~~ 342 (448)
.+.+..+.|..+. ...++..+.++.++ +..++ .|+||+++++++.+.++ .+.+++.++++.++++
T Consensus 127 -----~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAG-ld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~ 200 (351)
T TIGR03700 127 -----DLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAG-LDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHEL 200 (351)
T ss_pred -----CceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcC-CCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHc
Confidence 2233322222110 01122233333444 45554 79999999999999986 5788999999999999
Q ss_pred CCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeC----CCCcccCC--CCCCHHHHHHH
Q 013195 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTPAARM--KKVPSAVVKKR 406 (448)
Q Consensus 343 ~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~----pGT~~~~~--~~v~~~~~~~R 406 (448)
|+.+++.+|+|+ |||.++..+.+..++++..+..++..|.|. +|||+... +..+..+..+.
T Consensus 201 --Gi~~~sg~i~Gl-gEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~ 267 (351)
T TIGR03700 201 --GLKTNATMLYGH-IETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKT 267 (351)
T ss_pred --CCCcceEEEeeC-CCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHHHHHH
Confidence 999999999998 999999999999999999998899999999 59999876 55565554443
No 71
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.81 E-value=4.9e-19 Score=177.69 Aligned_cols=199 Identities=21% Similarity=0.270 Sum_probs=146.2
Q ss_pred EEEeCCCCCCCccceeeCccCCC--ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCC
Q 013195 195 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (448)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg~--~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~ 272 (448)
.+.+|.||+++|+||.+....+. ...+++++|+++++.+.+.|+++|.|+|........ ..+.++++.|.+..+
T Consensus 44 ~i~~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~---~~~~~li~~Ik~~~~- 119 (340)
T TIGR03699 44 NINYTNICVVGCKFCAFYRAPGHPEGYVLSVEEILQKIEELVAYGGTQILLQGGVNPDLGL---DYYEDLFRAIKARFP- 119 (340)
T ss_pred ccccchhhccCCccCCcccCCCCccccCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 46679999999999986544442 346899999999999999999999998764332211 235678888876542
Q ss_pred CCcceEEEeecCCcChhH-------HHHHHHHHHhCCCcccccc-cccCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHhC
Q 013195 273 DGSTMLRIGMTNPPFILE-------HLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELV 343 (448)
Q Consensus 273 ~~~~~iri~~~~p~~i~~-------~l~el~~l~~~~~~~~~l~-iglES~s~~vLk~m~R-~~t~e~~~~~i~~ir~~~ 343 (448)
...+.. +.+..+.. ..++..+.++.++ +.+++ .|+|+.++++++.+.+ +.+.+++.++++.++++
T Consensus 120 -~i~~~~---~s~~ei~~~~~~~g~~~~e~l~~Lk~aG-~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~- 193 (340)
T TIGR03699 120 -HIHIHS---FSPVEIVYIAKKEGLSLREVLERLKEAG-LDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKL- 193 (340)
T ss_pred -CcCCCC---CCHHHHHHHhccCCCCHHHHHHHHHHcC-CCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHc-
Confidence 121111 11111100 0123344444555 45666 6899999999999854 57999999999999999
Q ss_pred CCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeC----CCCcccCCCCCCHHHHHH
Q 013195 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTPAARMKKVPSAVVKK 405 (448)
Q Consensus 344 pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~----pGT~~~~~~~v~~~~~~~ 405 (448)
|+.+.+++|+|+ |||.++..+++.++++++.+...+..|.|. +|||+++.+..+..+..+
T Consensus 194 -Gi~v~~~~iiGl-gEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~ 257 (340)
T TIGR03699 194 -GLPTTATMMFGH-VETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTEYLK 257 (340)
T ss_pred -CCCccceeEeeC-CCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHHHHH
Confidence 999999999996 999999999999999999888777777775 799998876666655433
No 72
>PRK08445 hypothetical protein; Provisional
Probab=99.81 E-value=6.6e-19 Score=176.33 Aligned_cols=191 Identities=16% Similarity=0.196 Sum_probs=141.8
Q ss_pred EEEeCCCCCCCccceeeCccCC--CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCC
Q 013195 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (448)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~ 272 (448)
.|.+|.||+++|+||......+ .....++++|++.++.+.+.|.++|++.|++...+.. ..+.++++.|.+.++
T Consensus 45 ~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~~~~---e~~~~l~~~Ik~~~p- 120 (348)
T PRK08445 45 NINYTNICWVDCKFCAFYRHLKEDDAYILSFEEIDKKIEELLAIGGTQILFQGGVHPKLKI---EWYENLVSHIAQKYP- 120 (348)
T ss_pred ccccccccccCCccCCCccCCCCCCCeeCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 4778999999999999875432 2235599999999999999999999998765544432 356889999988775
Q ss_pred CCcceEEEeecCCcChhH----HHHHHHHHHhCCCccccc-ccccCCCCHHHHHhc-CCCCCHHHHHHHHHHHHHhCCCC
Q 013195 273 DGSTMLRIGMTNPPFILE----HLKEIAEVLRHPCVYSFL-HVPVQSGSDAVLSAM-NREYTLSDFRTVVDTLIELVPGM 346 (448)
Q Consensus 273 ~~~~~iri~~~~p~~i~~----~l~el~~l~~~~~~~~~l-~iglES~s~~vLk~m-~R~~t~e~~~~~i~~ir~~~pgi 346 (448)
+..+..+...+...+.. ..++..+.++..++ .++ ++|+||+++++++.+ +++.+.+++.++++.++++ |+
T Consensus 121 -~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl-~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~--Gi 196 (348)
T PRK08445 121 -TITIHGFSAVEIDYIAKISKISIKEVLERLQAKGL-SSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLI--GM 196 (348)
T ss_pred -CcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCC-CCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHc--CC
Confidence 33332222111111110 01223334445554 555 589999999999999 7789999999999999999 99
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEE-----EeceeCCCCcccCC
Q 013195 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI-----SQFYPRPGTPAARM 395 (448)
Q Consensus 347 ~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i-----~~~~p~pGT~~~~~ 395 (448)
.+++.+|+|+ +||.+++.+.+.+++++..+...+ ..|.| ||||++..
T Consensus 197 ~~~sg~i~G~-~Et~edr~~~l~~lreLq~~~~g~~~fi~~~~~p-~~tpl~~~ 248 (348)
T PRK08445 197 KSTATMMFGT-VENDEEIIEHWERIRDLQDETGGFRAFILWSFQP-DNTPLKEE 248 (348)
T ss_pred eeeeEEEecC-CCCHHHHHHHHHHHHHHHHHhCCeeEEeccccCC-CCCccccc
Confidence 9999999997 699999999999999997765333 33445 99999853
No 73
>PRK08508 biotin synthase; Provisional
Probab=99.80 E-value=3.8e-18 Score=166.30 Aligned_cols=188 Identities=16% Similarity=0.230 Sum_probs=142.2
Q ss_pred eCCCCCCCccceeeCccC-C---CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCC
Q 013195 198 INVGCLGACTYCKTKHAR-G---HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273 (448)
Q Consensus 198 isrGC~~~CsFC~~~~~r-g---~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~ 273 (448)
.|+||+++|.||+.+... + .++.+++|+|+++++++.+.|+.+|.+++.... +....-..+.++++.+.+..+
T Consensus 13 ~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~-~~~~~~e~~~ei~~~ik~~~p-- 89 (279)
T PRK08508 13 SSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRG-LDDKKLEYVAEAAKAVKKEVP-- 89 (279)
T ss_pred ccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCC-CCcccHHHHHHHHHHHHhhCC--
Confidence 488999999999987543 2 356689999999999999999999988643222 111111345677777766543
Q ss_pred Ccce-EEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Q 013195 274 GSTM-LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352 (448)
Q Consensus 274 ~~~~-iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~ 352 (448)
+..+ ...+ .++. +.+.+|. .++ +..+++++|| ++++++.+.+++++++..+.++.+++. |+.+.+.+
T Consensus 90 ~l~i~~s~G-----~~~~--e~l~~Lk-~aG-ld~~~~~lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~sg~ 157 (279)
T PRK08508 90 GLHLIACNG-----TASV--EQLKELK-KAG-IFSYNHNLET-SKEFFPKICTTHTWEERFQTCENAKEA--GLGLCSGG 157 (279)
T ss_pred CcEEEecCC-----CCCH--HHHHHHH-HcC-CCEEcccccc-hHHHhcCCCCCCCHHHHHHHHHHHHHc--CCeeccee
Confidence 2221 1222 1222 2244444 333 6899999999 578888888899999999999999999 99999999
Q ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCCCCCHHH
Q 013195 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402 (448)
Q Consensus 353 IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~~v~~~~ 402 (448)
|+|+ |||.+|..+++.++++++++.+-++.|.|.||||+.. +..+..+
T Consensus 158 I~Gl-GEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~-~~~~~~~ 205 (279)
T PRK08508 158 IFGL-GESWEDRISFLKSLASLSPHSTPINFFIPNPALPLKA-PTLSADE 205 (279)
T ss_pred EEec-CCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCCC-CCCCHHH
Confidence 9997 9999999999999999999999999999999999864 3445443
No 74
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.80 E-value=2.7e-18 Score=157.17 Aligned_cols=185 Identities=24% Similarity=0.392 Sum_probs=146.2
Q ss_pred EEeCCCCCCCccceeeCccCCCccccCH--HHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCC
Q 013195 196 LPINVGCLGACTYCKTKHARGHLGSYTV--ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273 (448)
Q Consensus 196 i~isrGC~~~CsFC~~~~~rg~~rsr~~--e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~ 273 (448)
+.+++||+++|+||..+...+.....+. +.+.+.+......+.+.+.+++.+..... .+.++++++.+..+
T Consensus 1 i~~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ggep~~~~-----~~~~~i~~~~~~~~-- 73 (204)
T cd01335 1 LELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPLLYP-----ELAELLRRLKKELP-- 73 (204)
T ss_pred CccCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHHhcCceEEEEeCCcCCccH-----hHHHHHHHHHhhCC--
Confidence 3679999999999999876654433333 45666666666678899999887765542 56888888876532
Q ss_pred CcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCEEEEEE
Q 013195 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-REYTLSDFRTVVDTLIELVPGMQIATDI 352 (448)
Q Consensus 274 ~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~-R~~t~e~~~~~i~~ir~~~pgi~i~~~~ 352 (448)
...+++. ++...+++.. +..+.+. + +..+.++++|+++.+++.++ ++.+.+++.+.++.+++. ++.+.+.+
T Consensus 74 -~~~~~i~-T~~~~~~~~~--~~~l~~~-g-~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~ 145 (204)
T cd01335 74 -GFEISIE-TNGTLLTEEL--LKELKEL-G-LDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREA--GLGLSTTL 145 (204)
T ss_pred -CceEEEE-cCcccCCHHH--HHHHHhC-C-CceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHc--CCCceEEE
Confidence 3456664 4555443322 4444443 2 57899999999999999988 788999999999999999 99999999
Q ss_pred EEeCCCCCHHHHHHHHHHHHhcC-CCeEEEEeceeCCCCcccCC
Q 013195 353 ICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGTPAARM 395 (448)
Q Consensus 353 IvG~PgET~ed~~~tl~~i~~l~-~~~v~i~~~~p~pGT~~~~~ 395 (448)
|+|.|+++.+++.++++++.+.. ++.+++++|+|.|||+++..
T Consensus 146 i~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~t~~~~~ 189 (204)
T cd01335 146 LVGLGDEDEEDDLEELELLAEFRSPDRVSLFRLLPEEGTPLELA 189 (204)
T ss_pred EEecCCChhHHHHHHHHHHHhhcCcchhhhhhhcccCCCeeeec
Confidence 99999999999999999999998 89999999999999999943
No 75
>PLN02389 biotin synthase
Probab=99.80 E-value=7.3e-18 Score=170.03 Aligned_cols=202 Identities=15% Similarity=0.233 Sum_probs=150.2
Q ss_pred EEEEEe-CCCCCCCccceeeCccC--C--CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC-CCHHHHHHHH
Q 013195 193 VEILPI-NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAI 266 (448)
Q Consensus 193 ~~~i~i-srGC~~~CsFC~~~~~r--g--~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~-~~l~~ll~~l 266 (448)
...+.+ +.||+.+|.||...... + .++..++|+|++.++.+.+.|+++|.++..-.+..+.+.. ..+.++++.+
T Consensus 83 ~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~i 162 (379)
T PLN02389 83 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEI 162 (379)
T ss_pred EEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHH
Confidence 345666 89999999999876432 2 2556899999999999999999999886421122232211 2455666666
Q ss_pred HHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Q 013195 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346 (448)
Q Consensus 267 ~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi 346 (448)
.+ . + ..+. .....++++. +..|. .++ +.++++.+++ +++..+.+..+++++++.++++.+++. |+
T Consensus 163 k~-~---~-l~i~---~s~G~l~~E~--l~~Lk-eAG-ld~~~~~LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~--Gi 227 (379)
T PLN02389 163 RG-M---G-MEVC---CTLGMLEKEQ--AAQLK-EAG-LTAYNHNLDT-SREYYPNVITTRSYDDRLETLEAVREA--GI 227 (379)
T ss_pred hc-C---C-cEEE---ECCCCCCHHH--HHHHH-HcC-CCEEEeeecC-ChHHhCCcCCCCCHHHHHHHHHHHHHc--CC
Confidence 42 2 2 2222 2222334322 44444 344 5788999999 688888888889999999999999999 99
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhc--CCCeEEEEeceeCCCCcccCCCCCCHHHHHHHHHHH
Q 013195 347 QIATDIICGFPGETDEDFNQTVNLIKEY--KFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 410 (448)
Q Consensus 347 ~i~~~~IvG~PgET~ed~~~tl~~i~~l--~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l 410 (448)
.+.+.+|+|+ |||.+|..+++.+++++ .++.+.++.|+|.||||+++.++++..+..+.....
T Consensus 228 ~v~sg~IiGl-gEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~ 292 (379)
T PLN02389 228 SVCSGGIIGL-GEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVRMIATA 292 (379)
T ss_pred eEeEEEEECC-CCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCHHHHHHHHHHH
Confidence 9999999999 99999999999999999 578999999999999999988877776655544433
No 76
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.77 E-value=3.9e-18 Score=151.57 Aligned_cols=162 Identities=20% Similarity=0.375 Sum_probs=126.6
Q ss_pred EEeCCCCCCCccceeeCc--cCCCccccCHHHHHHHHHHH-HHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCC
Q 013195 196 LPINVGCLGACTYCKTKH--ARGHLGSYTVESLVGRVRTV-IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (448)
Q Consensus 196 i~isrGC~~~CsFC~~~~--~rg~~rsr~~e~Iv~ei~~l-~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~ 272 (448)
|++++||+++|.||..+. ..+..+.+++++++++++.+ ...|...+.+++++...+ ..+.+++..+.+...
T Consensus 1 i~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~-----~~~~~~~~~~~~~~~- 74 (166)
T PF04055_consen 1 IETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLH-----PDFIELLELLRKIKK- 74 (166)
T ss_dssp EEEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGS-----CHHHHHHHHHHHCTC-
T ss_pred CEECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcc-----hhHHHHHHHHHHhhc-
Confidence 578999999999999987 44568889999999999999 588877888877666554 346777777776431
Q ss_pred CCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHH-HHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Q 013195 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDA-VLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351 (448)
Q Consensus 273 ~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~-vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~ 351 (448)
....+.+. +++....+. .+..+.+.+ +..+.+++||.+++ +++.++++.+.+++.++++.++++ |+.....
T Consensus 75 -~~~~i~~~-t~~~~~~~~--~l~~l~~~~--~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--g~~~~~~ 146 (166)
T PF04055_consen 75 -RGIRISIN-TNGTLLDEE--LLDELKKLG--VDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEA--GIPRVII 146 (166)
T ss_dssp -TTEEEEEE-EESTTHCHH--HHHHHHHTT--CSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHT--TSETEEE
T ss_pred -cccceeee-ccccchhHH--HHHHHHhcC--ccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHc--CCCcEEE
Confidence 23455554 455444322 244444443 57999999999999 999999999999999999999999 8776889
Q ss_pred EEEeCCCCCHHHHHHHHHHH
Q 013195 352 IICGFPGETDEDFNQTVNLI 371 (448)
Q Consensus 352 ~IvG~PgET~ed~~~tl~~i 371 (448)
+|+|+||||+++++++++|+
T Consensus 147 ~i~~~~~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 147 FIVGLPGENDEEIEETIRFI 166 (166)
T ss_dssp EEEEBTTTSHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHhCcC
Confidence 99999999999999999986
No 77
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.74 E-value=1.2e-16 Score=161.73 Aligned_cols=201 Identities=13% Similarity=0.131 Sum_probs=150.3
Q ss_pred EEEEEeCCCCCCCccceeeCccCC-CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCC
Q 013195 193 VEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg-~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~ 271 (448)
.+.|.+|.+|+++|.||..+...+ ..+..++++|+++++.+.+.|+++|.|++...... .+ ...+.++++.|.+.++
T Consensus 75 ~~~in~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~-~~-~e~l~~~i~~Ik~~~p 152 (371)
T PRK09240 75 YTPLYLSNYCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKKLGFEHILLLTGEHEAK-VG-VDYIRRALPIAREYFS 152 (371)
T ss_pred EeceEEcccccCcCCcCCCCCCCCCccccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC-CC-HHHHHHHHHHHHHhCC
Confidence 345678999999999999865433 24667999999999999999999999987543321 11 1346677777765543
Q ss_pred CCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcC---CCCCHHHHHHHHHHHHHhCCCCE-
Q 013195 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIELVPGMQ- 347 (448)
Q Consensus 272 ~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~---R~~t~e~~~~~i~~ir~~~pgi~- 347 (448)
.+.+. ..| ++. +++..+. ..+ +.++++++||.+++.++.+. ++++.++..++++.++++ |+.
T Consensus 153 -----~i~i~-~g~--lt~--e~l~~Lk-~aG-v~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~a--G~~~ 218 (371)
T PRK09240 153 -----SVSIE-VQP--LSE--EEYAELV-ELG-LDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRA--GIRK 218 (371)
T ss_pred -----Cceec-cCC--CCH--HHHHHHH-HcC-CCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHc--CCCe
Confidence 23332 223 332 2244444 444 68999999999999999985 578999999999999999 995
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcCCC------eEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHH
Q 013195 348 IATDIICGFPGETDEDFNQTVNLIKEYKFP------QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411 (448)
Q Consensus 348 i~~~~IvG~PgET~ed~~~tl~~i~~l~~~------~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~ 411 (448)
+++++|+|+ ||+.+|..+++..++++... .+.+..|.|.|| |+...+.+++.+..+....++
T Consensus 219 v~~g~i~Gl-ge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~~~~~e~l~~ia~~R 286 (371)
T PRK09240 219 IGLGALLGL-SDWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEPASIVSDKQLVQLICAFR 286 (371)
T ss_pred eceEEEecC-CccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCC-CCCCCCCCCHHHHHHHHHHHH
Confidence 999999999 67999998888888888643 677889999999 887666788877666554443
No 78
>PRK15108 biotin synthase; Provisional
Probab=99.72 E-value=5.2e-16 Score=155.42 Aligned_cols=199 Identities=17% Similarity=0.230 Sum_probs=147.3
Q ss_pred EEEEEe-CCCCCCCccceeeCccC--C--CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHH
Q 013195 193 VEILPI-NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (448)
Q Consensus 193 ~~~i~i-srGC~~~CsFC~~~~~r--g--~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~ 267 (448)
...+.+ |.+|+.+|.||...... + +.+..++|+|++.++.+.+.|+++|.+.+........+ -..+.++++.+.
T Consensus 43 ~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~-~e~i~~~i~~ik 121 (345)
T PRK15108 43 STLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERD-MPYLEQMVQGVK 121 (345)
T ss_pred EEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcch-HHHHHHHHHHHH
Confidence 344565 99999999999876422 2 24457999999999999999999997754211111111 124566777765
Q ss_pred HhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCE
Q 013195 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (448)
Q Consensus 268 ~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~ 347 (448)
+ . +. .+.++ ...++. +.+.++. .++ ..++++.++| +++....+..+++.+++.+.++.+++. |+.
T Consensus 122 ~-~---~i-~v~~s---~G~ls~--e~l~~Lk-eAG-ld~~n~~leT-~p~~f~~I~~~~~~~~rl~~i~~a~~~--G~~ 186 (345)
T PRK15108 122 A-M---GL-ETCMT---LGTLSE--SQAQRLA-NAG-LDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDA--GIK 186 (345)
T ss_pred h-C---CC-EEEEe---CCcCCH--HHHHHHH-HcC-CCEEeecccc-ChHhcCCCCCCCCHHHHHHHHHHHHHc--CCc
Confidence 4 2 22 22222 222333 2244444 334 5789999999 899889898889999999999999999 999
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhc--CCCeEEEEeceeCCCCcccCCCCCCHHHHHHHHH
Q 013195 348 IATDIICGFPGETDEDFNQTVNLIKEY--KFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408 (448)
Q Consensus 348 i~~~~IvG~PgET~ed~~~tl~~i~~l--~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~ 408 (448)
+.+.+|+|+ |||.+|..+.+..++++ ..+.+.++.|.|.||||+.+.+.+++.+..+...
T Consensus 187 v~sg~i~Gl-gEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iA 248 (345)
T PRK15108 187 VCSGGIVGL-GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIA 248 (345)
T ss_pred eeeEEEEeC-CCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHH
Confidence 999999998 99999999999999999 6778999999999999998877777766555443
No 79
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.71 E-value=7.2e-16 Score=150.48 Aligned_cols=197 Identities=21% Similarity=0.317 Sum_probs=148.2
Q ss_pred EEEEEeCCCC-CCCccceeeCccC--C--CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHH
Q 013195 193 VEILPINVGC-LGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (448)
Q Consensus 193 ~~~i~isrGC-~~~CsFC~~~~~r--g--~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~ 267 (448)
...|.++.|| |-+|.||...... | ++..+++++|+++++.+.+.|...+.++..--+ ++++ ...+.++++.+.
T Consensus 51 ~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~-~~~~-~~~i~~~v~~Vk 128 (335)
T COG0502 51 STLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRG-PGRD-MEEVVEAIKAVK 128 (335)
T ss_pred EEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCCceEEEEEeccC-CCcc-HHHHHHHHHHHH
Confidence 4567777766 9999999876422 2 366778999999999999999777666543222 2222 134556666666
Q ss_pred HhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCE
Q 013195 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (448)
Q Consensus 268 ~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~ 347 (448)
+... -...+.++++ +++ .+.++. .++ ..+..-.+|| |++..+.+.-++|+++-.+.++.++++ |+.
T Consensus 129 ~~~~--le~c~slG~l-----~~e--q~~~L~-~aG-vd~ynhNLeT-s~~~y~~I~tt~t~edR~~tl~~vk~~--Gi~ 194 (335)
T COG0502 129 EELG--LEVCASLGML-----TEE--QAEKLA-DAG-VDRYNHNLET-SPEFYENIITTRTYEDRLNTLENVREA--GIE 194 (335)
T ss_pred HhcC--cHHhhccCCC-----CHH--HHHHHH-HcC-hhheeccccc-CHHHHcccCCCCCHHHHHHHHHHHHHc--CCc
Confidence 4442 1123344433 222 234443 334 4677789999 999999999999999999999999999 999
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcC-CCeEEEEeceeCCCCcccCCCCCCHHHHHHH
Q 013195 348 IATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406 (448)
Q Consensus 348 i~~~~IvG~PgET~ed~~~tl~~i~~l~-~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R 406 (448)
+++..|+|+ |||.+|-.+.+.++.++. ++.|-|+.|.|.||||+.+.+.++..+.-+-
T Consensus 195 vcsGgI~Gl-GEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~ 253 (335)
T COG0502 195 VCSGGIVGL-GETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAKPLDPFEFLKT 253 (335)
T ss_pred cccceEecC-CCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCCCCHHHHHHH
Confidence 999999999 999999999999999998 9999999999999999999887776554443
No 80
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.68 E-value=1.8e-15 Score=153.00 Aligned_cols=204 Identities=12% Similarity=0.127 Sum_probs=148.5
Q ss_pred EEEEEeCCCCCCCccceeeCccCC-CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCC
Q 013195 193 VEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg-~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~ 271 (448)
.+.+..|.+|+++|.||......+ .....++++|+++++.+.+.|+++|.+++...... .+ ...+.++++.+.+.++
T Consensus 74 ~~~i~~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~-~~-~e~l~eii~~Ik~~~p 151 (366)
T TIGR02351 74 FTPLYLSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREIEAIKKSGFKEILLVTGESEKA-AG-VEYIAEAIKLAREYFS 151 (366)
T ss_pred EeeeeECccccCCCCcCCCCCCCCCccCcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC-CC-HHHHHHHHHHHHHhCC
Confidence 345678999999999998864322 12446899999999999999999999986432221 11 1246777777766543
Q ss_pred CCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcC---CCCCHHHHHHHHHHHHHhCCCCE-
Q 013195 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIELVPGMQ- 347 (448)
Q Consensus 272 ~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~---R~~t~e~~~~~i~~ir~~~pgi~- 347 (448)
.+.+. +.| ++. +++..+.+ .+ ..++++++||.+++.++.|+ +.++.++..++++.++++ |+.
T Consensus 152 -----~i~Ie-i~~--lt~--e~~~~Lk~-aG-v~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~a--G~~~ 217 (366)
T TIGR02351 152 -----SLAIE-VQP--LNE--EEYKKLVE-AG-LDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKA--GMRK 217 (366)
T ss_pred -----ccccc-ccc--CCH--HHHHHHHH-cC-CCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHc--CCCe
Confidence 22222 222 333 22444443 34 57999999999999999987 678999999999999999 996
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcCC------CeEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHHHHH
Q 013195 348 IATDIICGFPGETDEDFNQTVNLIKEYKF------PQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414 (448)
Q Consensus 348 i~~~~IvG~PgET~ed~~~tl~~i~~l~~------~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~ 414 (448)
+++++|+|++ |+.++..+++..++.+.. ..+.+..+.|.+| |+...+.+++.+..+....++-+.
T Consensus 218 v~~g~i~Gl~-e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~l~~~~~~~~i~~~R~~~ 288 (366)
T TIGR02351 218 IGIGALLGLD-DWRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTN-GLKPKVIVTDRELVQIICAYRLFD 288 (366)
T ss_pred eceeEEEeCc-hhHHHHHHHHHHHHHHHHHcCCCCccccccccccCCC-CCCCCCcCCHHHHHHHHHHHHHhC
Confidence 8999999995 577777777777666644 5778888999999 876656788877777665555443
No 81
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.66 E-value=2.3e-15 Score=152.45 Aligned_cols=188 Identities=18% Similarity=0.269 Sum_probs=139.4
Q ss_pred EEEeCCCCCCCccceeeCccCC--CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCC
Q 013195 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (448)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~ 272 (448)
.|++|.+|+.+|.||.+....+ .....++|+|++.++.+.+.|++++.+++..-.... + ...+.++++.+++.++
T Consensus 63 ~i~~Tn~C~~~C~fC~~~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~-~-~e~~~~~i~~ik~~~~- 139 (371)
T PRK07360 63 NINFTNICEGHCGFCAFRRDEGDHGAFWLTIAEILEKAAEAVKRGATEVCIQGGLHPAAD-S-LEFYLEILEAIKEEFP- 139 (371)
T ss_pred CcccchhhhcCCccCCcccCCCCCCCeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCC-c-HHHHHHHHHHHHHhCC-
Confidence 4677999999999999865432 122479999999999999999999999975322211 0 1246788888876543
Q ss_pred CCcceEEEeecCC----------cChhHHHHHHHHHHhCCCcccccc-cccCCCCHHHHHhcCCC-CCHHHHHHHHHHHH
Q 013195 273 DGSTMLRIGMTNP----------PFILEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLI 340 (448)
Q Consensus 273 ~~~~~iri~~~~p----------~~i~~~l~el~~l~~~~~~~~~l~-iglES~s~~vLk~m~R~-~t~e~~~~~i~~ir 340 (448)
.+.+..+.+ ....+ +.+..+. .+++ .+++ -+-+..++++++.+..+ .+.+++.++++.++
T Consensus 140 ----~i~i~a~s~~ei~~~~~~~G~~~~--e~l~~Lk-eAGl-d~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~ 211 (371)
T PRK07360 140 ----DIHLHAFSPMEVYFAAREDGLSYE--EVLKALK-DAGL-DSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAH 211 (371)
T ss_pred ----CcceeeCCHHHHHHHHhhcCCCHH--HHHHHHH-HcCC-CcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHH
Confidence 222221111 11122 2244443 4554 3443 56777888998888765 69999999999999
Q ss_pred HhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCC----CCcccCCC
Q 013195 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP----GTPAARMK 396 (448)
Q Consensus 341 ~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~p----GT~~~~~~ 396 (448)
+. |+.+++.+|+|+ |||.+|..+.+.++++++.+..++..|.|.| |||+....
T Consensus 212 ~~--Gl~~~sg~i~G~-gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~ 268 (371)
T PRK07360 212 KL--GLPTTSTMMYGH-VETPEHRIDHLLILREIQQETGGITEFVPLPFVHENAPLYERG 268 (371)
T ss_pred Hc--CCCceeeEEeeC-CCCHHHHHHHHHHHHHhchhhCCeeEEEeccccCCCCcccccc
Confidence 99 999999999998 9999999999999999999999999999865 99998654
No 82
>PRK08444 hypothetical protein; Provisional
Probab=99.66 E-value=3.3e-15 Score=149.57 Aligned_cols=197 Identities=14% Similarity=0.153 Sum_probs=148.5
Q ss_pred EEEeCCCCCCCccceeeCccCC--CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCC
Q 013195 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (448)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~ 272 (448)
+|.+|.-|..+|.||++....+ .....++|+|++.++...+.|+++|.+++..-..+.. ..+.++++.|.+.++
T Consensus 52 ~In~TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~---e~y~e~ir~Ik~~~p- 127 (353)
T PRK08444 52 HINPTNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNYGY---EWYLEIFKKIKEAYP- 127 (353)
T ss_pred CcccccccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 4677999999999999865333 2134799999999999999999999999853332211 346788888887654
Q ss_pred CCcceEEEeecCCcChh-------HHHHHHHHHHhCCCccccccc-ccCCCCHHHHHhcCCCC-CHHHHHHHHHHHHHhC
Q 013195 273 DGSTMLRIGMTNPPFIL-------EHLKEIAEVLRHPCVYSFLHV-PVQSGSDAVLSAMNREY-TLSDFRTVVDTLIELV 343 (448)
Q Consensus 273 ~~~~~iri~~~~p~~i~-------~~l~el~~l~~~~~~~~~l~i-glES~s~~vLk~m~R~~-t~e~~~~~i~~ir~~~ 343 (448)
.+.+..+.|..+. -..++....++.+++ ..++- |.|..++++.+.+..++ +.+++.++++.++++
T Consensus 128 ----~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl-~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~- 201 (353)
T PRK08444 128 ----NLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGV-DSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKK- 201 (353)
T ss_pred ----CceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCc-ccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHc-
Confidence 2334323332211 011223334445554 34444 79999999999998755 668999999999999
Q ss_pred CCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeC----CCCcccCCCCCCHHHH
Q 013195 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTPAARMKKVPSAVV 403 (448)
Q Consensus 344 pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~----pGT~~~~~~~v~~~~~ 403 (448)
|+.+++.+|+|+ |||.+|..+.+..++++..+...++.|.|. +|||+...+..+..+.
T Consensus 202 -Gi~~~sg~l~G~-gEt~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~ 263 (353)
T PRK08444 202 -GKMSNATMLFGH-IENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQEI 263 (353)
T ss_pred -CCCccceeEEec-CCCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCCCCCCHHHH
Confidence 999999999999 599999999999999999999999999999 9999987666665543
No 83
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=99.65 E-value=5e-15 Score=146.95 Aligned_cols=214 Identities=20% Similarity=0.211 Sum_probs=153.3
Q ss_pred EEEEEeCCCCCC-CccceeeC------ccC-C---------CccccCHHHHHHHHHHHHHCCCc----EEEEEecCCCCC
Q 013195 193 VEILPINVGCLG-ACTYCKTK------HAR-G---------HLGSYTVESLVGRVRTVIADGVK----EVWLSSEDTGAY 251 (448)
Q Consensus 193 ~~~i~isrGC~~-~CsFC~~~------~~r-g---------~~rsr~~e~Iv~ei~~l~~~G~~----ei~~~~~~~~~y 251 (448)
.|.+..-.|||+ .|.||.-. ... | +.+.-|-.++...+++|...|.. |+.|.|..|.+.
T Consensus 68 VaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGTFta~ 147 (515)
T COG1243 68 VAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTFTAL 147 (515)
T ss_pred EEEecCCCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEecccccCC
Confidence 344444569998 89999543 222 1 12344678888999999887642 788889888776
Q ss_pred CCCCCCCH-HHHHHHHH----------HhCC--CCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHH
Q 013195 252 GRDIGVNL-PILLNAIV----------AELP--PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDA 318 (448)
Q Consensus 252 g~d~~~~l-~~ll~~l~----------~~~~--~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~ 318 (448)
..+....| ..+++++. ..-. ......++++ +.|+.+.+.. +..|++-+ +..+.+|+||..++
T Consensus 148 ~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiE-TRPD~~~ee~--ld~mlkyG--~TrVELGVQSiyd~ 222 (515)
T COG1243 148 SLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIE-TRPDYIDEEH--LDQMLKYG--VTRVELGVQSIYDD 222 (515)
T ss_pred CHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEe-cCccccCHHH--HHHHHhcC--CcEEEEeeeeHHHH
Confidence 54432222 22333333 0000 0012347776 7999887643 55566554 78999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC---CCeEEEEeceeCCCCcccCC
Q 013195 319 VLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK---FPQVHISQFYPRPGTPAARM 395 (448)
Q Consensus 319 vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~---~~~v~i~~~~p~pGT~~~~~ 395 (448)
||+.++||||.+++.++.+.++++ |+.+...+|.|+||-+.+--.++...+-+.+ +|.+.|++--..+||++++|
T Consensus 223 Vl~~~~RGHtvedv~~a~rLlKd~--GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~m 300 (515)
T COG1243 223 VLERTKRGHTVEDVVEATRLLKDA--GFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYEM 300 (515)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhc--CcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHHHH
Confidence 999999999999999999999999 9999999999999988765555555555554 89999999999999999976
Q ss_pred C------CCCHHHHHHHHHHHHHH
Q 013195 396 K------KVPSAVVKKRSRELTSV 413 (448)
Q Consensus 396 ~------~v~~~~~~~R~~~l~~~ 413 (448)
- ..+.++.-+....+..+
T Consensus 301 wk~G~Ykpy~~EEaVeli~~i~~~ 324 (515)
T COG1243 301 WKRGLYKPYTTEEAVELIVEIYRL 324 (515)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHh
Confidence 2 35677777766666533
No 84
>PRK05926 hypothetical protein; Provisional
Probab=99.64 E-value=1.6e-14 Score=145.54 Aligned_cols=186 Identities=16% Similarity=0.190 Sum_probs=139.5
Q ss_pred EEeCCCCCCCccceeeCccCC--CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCC
Q 013195 196 LPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273 (448)
Q Consensus 196 i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~ 273 (448)
+..|..|+.+|.||++....+ .....++|+|++.++.. +.|+++|.+++..-..+.. ..+.++++.|.+.++
T Consensus 72 in~Tn~C~~dC~FCaf~~~~~~~~~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~~~---e~~~e~i~~Ik~~~p-- 145 (370)
T PRK05926 72 LYPTNFCQFNCTFCSFYAKPGDPKGWFYTPDQLVQSIKEN-PSPITETHIVAGCFPSCNL---AYYEELFSKIKQNFP-- 145 (370)
T ss_pred eecCCCCCCCCCccccccCCCCcccccCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCCCH---HHHHHHHHHHHHhCC--
Confidence 346999999999999655433 24557899999999998 6899999999754322211 346788888887664
Q ss_pred CcceEEEeecCCcChh-------HHHHHHHHHHhCCCcccccc-cccCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHhCC
Q 013195 274 GSTMLRIGMTNPPFIL-------EHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVP 344 (448)
Q Consensus 274 ~~~~iri~~~~p~~i~-------~~l~el~~l~~~~~~~~~l~-iglES~s~~vLk~m~R-~~t~e~~~~~i~~ir~~~p 344 (448)
.+.+..+.+..+. ...++..+.++..++ .+++ -|.|+.++++++.+.. +.+.+++.++++.++++
T Consensus 146 ---~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl-~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~-- 219 (370)
T PRK05926 146 ---DLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGL-DSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSL-- 219 (370)
T ss_pred ---CeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCc-CccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHc--
Confidence 3333322221110 011233334445554 4555 4799999999998864 57889999999999999
Q ss_pred CCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecee----CCCCcccC
Q 013195 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP----RPGTPAAR 394 (448)
Q Consensus 345 gi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p----~pGT~~~~ 394 (448)
|+.+++.+|+|+ |||.+|..+.+..++++..+.++|..|.| -++||+..
T Consensus 220 Gi~~~sgmi~G~-gEt~edrv~~l~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~ 272 (370)
T PRK05926 220 GIPSNATMLCYH-RETPEDIVTHMSKLRALQDKTSGFKNFILLKFASENNALGK 272 (370)
T ss_pred CCcccCceEEeC-CCCHHHHHHHHHHHHhcCCccCCeeeeEecccCCCCCcccc
Confidence 999999988885 99999999999999999999999999999 67888764
No 85
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.62 E-value=1e-13 Score=138.72 Aligned_cols=198 Identities=18% Similarity=0.250 Sum_probs=148.9
Q ss_pred EEEEEeCCCCCCCccceeeCcc---CCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHh
Q 013195 193 VEILPINVGCLGACTYCKTKHA---RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~---rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~ 269 (448)
+..|.++.+|+.+|.||..+.. .++.+..+++++.+.++.+.+.|++.|.|+|++...+ .++.++++.+.+.
T Consensus 18 ~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~-----~~l~~li~~i~~~ 92 (331)
T PRK00164 18 YLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEPLLR-----KDLEDIIAALAAL 92 (331)
T ss_pred eEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcCc-----cCHHHHHHHHHhc
Confidence 4568999999999999986542 2346678899999999998889999999999776543 3578888888653
Q ss_pred CCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-EE
Q 013195 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QI 348 (448)
Q Consensus 270 ~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi-~i 348 (448)
. +...+.+. +|...+.+. +..+. ..+ ...+.++++|.+++..+.++++.+.+++.+.++.+++. |+ .+
T Consensus 93 -~--~~~~i~it-TNG~ll~~~---~~~L~-~ag-l~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~--g~~~v 161 (331)
T PRK00164 93 -P--GIRDLALT-TNGYLLARR---AAALK-DAG-LDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAA--GLTPV 161 (331)
T ss_pred -C--CCceEEEE-cCchhHHHH---HHHHH-HcC-CCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHC--CCCcE
Confidence 2 23455664 565444432 23333 333 46899999999999999999999999999999999998 76 66
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHH
Q 013195 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408 (448)
Q Consensus 349 ~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~ 408 (448)
...++ .+||.+++++.+.+++++++++ .+.+..|+|.++...+... .++.++..+++.
T Consensus 162 ~i~~v-v~~g~n~~ei~~l~~~~~~~gv-~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~ 220 (331)
T PRK00164 162 KVNAV-LMKGVNDDEIPDLLEWAKDRGI-QLRFIELMPTGEGNEWFRKHHLSGAEIRARLA 220 (331)
T ss_pred EEEEE-EECCCCHHHHHHHHHHHHhCCC-eEEEEEeeECCCCcchhhhcCCCHHHHHHHHH
Confidence 65554 4689999999999999999987 5788889998776544333 455555555433
No 86
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.61 E-value=4.5e-14 Score=145.67 Aligned_cols=201 Identities=13% Similarity=0.168 Sum_probs=144.7
Q ss_pred EEEEEeCCCCCCCccceeeCccCCC--ccccCHHHHHHHHHHHHHCCCcEEEEEecCC-CCCCCCCCCCHHHHHHHHHHh
Q 013195 193 VEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDT-GAYGRDIGVNLPILLNAIVAE 269 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg~--~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~-~~yg~d~~~~l~~ll~~l~~~ 269 (448)
.++|.+|..|+++|.||.+....+. ....++|+|+++++.+.+.|++++.+++... ..++. ..+.++++.|.+.
T Consensus 85 fapLyiSN~C~n~C~YCgfs~~n~~i~r~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~~~---eyi~e~i~~I~~~ 161 (469)
T PRK09613 85 FAPLYISNYCVNNCVYCGFRRSNKEIKRKKLTQEEIREEVKALEDMGHKRLALVAGEDPPNCDI---EYILESIKTIYST 161 (469)
T ss_pred EEeccccCCCCCCCccCCCccCCCCCCceECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCH---HHHHHHHHHHHHh
Confidence 4567789999999999998754432 2456899999999999999999999976432 22211 3466777777653
Q ss_pred CCCCC-cceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCC---CCCHHHHHHHHHHHHHhCCC
Q 013195 270 LPPDG-STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR---EYTLSDFRTVVDTLIELVPG 345 (448)
Q Consensus 270 ~~~~~-~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R---~~t~e~~~~~i~~ir~~~pg 345 (448)
....+ ...+.++ +-| ++. +++..|... + ..++++-.||.+.++.+.++. +++.++-.++++.++++ |
T Consensus 162 ~~~~g~i~~v~in-ig~--lt~--eey~~Lkea-G-v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~a--G 232 (469)
T PRK09613 162 KHGNGEIRRVNVN-IAP--TTV--ENYKKLKEA-G-IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEA--G 232 (469)
T ss_pred ccccCcceeeEEE-eec--CCH--HHHHHHHHc-C-CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHc--C
Confidence 22111 1234443 223 333 335555443 3 578889999999999999854 58899999999999999 9
Q ss_pred CE-EEEEEEEeCCCCCHHHHHHHHHHHHhc------CCCeEEEEeceeCCCCcccCCC-CCCHHHHHHH
Q 013195 346 MQ-IATDIICGFPGETDEDFNQTVNLIKEY------KFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406 (448)
Q Consensus 346 i~-i~~~~IvG~PgET~ed~~~tl~~i~~l------~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R 406 (448)
+. +++.+|+|++ |+.+|...++..++.+ +++.+.+..|.|.+|||+.+.+ .+++++..+-
T Consensus 233 i~~Vg~G~L~GLg-e~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lri 300 (469)
T PRK09613 233 IDDVGIGVLFGLY-DYKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKI 300 (469)
T ss_pred CCeeCeEEEEcCC-CCHHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHH
Confidence 97 9999999995 4555655666666666 5777888899999999998776 5777654443
No 87
>PRK05927 hypothetical protein; Provisional
Probab=99.59 E-value=1.9e-14 Score=144.08 Aligned_cols=195 Identities=15% Similarity=0.153 Sum_probs=142.6
Q ss_pred EEEeCCCCCCCccceeeCccCCC--ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCC
Q 013195 195 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (448)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg~--~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~ 272 (448)
.|.+|.-|+.+|.||.+....+. ....++++|++.++...+.|++++.|+|..-..++. ..+.++++.|++.++
T Consensus 48 ~i~~Tn~C~~~C~fCaf~~~~~~~~~y~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~~~~---e~~~~~i~~ik~~~p- 123 (350)
T PRK05927 48 NPNYTNICKIDCTFCAFYRKPHSSDAYLLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQLGI---DYLEELVRITVKEFP- 123 (350)
T ss_pred CCccchhhhcCCccCCccCCCCCccccccCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 35679999999999998653332 125789999999999999999999998754333222 346788888887654
Q ss_pred CCcceEEEeecCC----------cChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCC-CCHHHHHHHHHHHHH
Q 013195 273 DGSTMLRIGMTNP----------PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIE 341 (448)
Q Consensus 273 ~~~~~iri~~~~p----------~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~-~t~e~~~~~i~~ir~ 341 (448)
.. .+....| ....+ +.+.. ++.+++-...+.++|+.++.+.+.+..+ ++.+++.++++.+++
T Consensus 124 -~l---~~~~~s~~ei~~~~~~~G~~~~--e~l~~-Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~ 196 (350)
T PRK05927 124 -SL---HPHFFSAVEIAHAAQVSGISTE--QALER-LWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHR 196 (350)
T ss_pred -CC---cccCCCHHHHHHHHHhcCCCHH--HHHHH-HHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHH
Confidence 11 1111111 11122 22333 3455553334458999999999988874 578999999999999
Q ss_pred hCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeC----CCCcccCCC--CCCHHHH
Q 013195 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTPAARMK--KVPSAVV 403 (448)
Q Consensus 342 ~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~----pGT~~~~~~--~v~~~~~ 403 (448)
. |+.+++.+|+|+ |||.+|..+.+..++++..+..+|..|.|. +|||+.... ..+..+.
T Consensus 197 l--Gi~~~sg~l~G~-gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~ 261 (350)
T PRK05927 197 L--GFRSTATMMFGH-VESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPELY 261 (350)
T ss_pred c--CCCcCceeEEee-CCCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHH
Confidence 9 999999999999 999999999999999999777788888887 789987532 3554443
No 88
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.58 E-value=3.1e-13 Score=135.09 Aligned_cols=200 Identities=17% Similarity=0.214 Sum_probs=147.7
Q ss_pred EEEEEeCCCCCCCccceeeCcc--CCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhC
Q 013195 193 VEILPINVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~--rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~ 270 (448)
+..|.++.+|+.+|.||..... ..+....+.+++..-++.+.+.|++.|.|+|+....+ .++.++++.+.+.
T Consensus 15 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr-----~dl~~li~~i~~~- 88 (329)
T PRK13361 15 YLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEPLVR-----RGCDQLVARLGKL- 88 (329)
T ss_pred eEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcCCCcc-----ccHHHHHHHHHhC-
Confidence 4467899999999999974421 1234567899999988888889999999998765543 4678899888653
Q ss_pred CCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-EEE
Q 013195 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QIA 349 (448)
Q Consensus 271 ~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi-~i~ 349 (448)
. +...+.+. +|...+.+. +..+ ...+ ..++.++++|.+++..+.+.++.+.+++.+.++.++++ |+ .+.
T Consensus 89 ~--~l~~i~it-TNG~ll~~~---~~~L-~~aG-l~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~--Gi~~v~ 158 (329)
T PRK13361 89 P--GLEELSLT-TNGSRLARF---AAEL-ADAG-LKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAA--GFERIK 158 (329)
T ss_pred C--CCceEEEE-eChhHHHHH---HHHH-HHcC-CCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHc--CCCceE
Confidence 2 23356664 566555432 2233 3334 57899999999999999999989999999999999999 87 566
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHHHH
Q 013195 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL 410 (448)
Q Consensus 350 ~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l 410 (448)
..+++ ++|++.+++.+.++|+.+++++ +.+..|+|..+..-+... .++.++..+.+...
T Consensus 159 in~v~-~~g~N~~ei~~~~~~~~~~gi~-~~~ie~mP~g~~~~~~~~~~~~~~e~~~~l~~~ 218 (329)
T PRK13361 159 LNAVI-LRGQNDDEVLDLVEFCRERGLD-IAFIEEMPLGEIDERRRARHCSSDEVRAIIETR 218 (329)
T ss_pred EEEEE-ECCCCHHHHHHHHHHHHhcCCe-EEEEecccCCCccchhhccCcCHHHHHHHHHHh
Confidence 55543 6899999999999999999986 457788998654432222 56776666665444
No 89
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.54 E-value=1e-12 Score=131.72 Aligned_cols=197 Identities=18% Similarity=0.267 Sum_probs=147.2
Q ss_pred EEEEEeCCCCCCCccceeeCcc----CCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHH
Q 013195 193 VEILPINVGCLGACTYCKTKHA----RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~----rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~ 268 (448)
+..|.++.+|+.+|.||..... ..+....+.+++.+.++.+.+.|++.|.|+|++.... .++.++++.+.+
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~-----~~l~~li~~i~~ 85 (334)
T TIGR02666 11 YLRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLR-----KDLVELVARLAA 85 (334)
T ss_pred eEEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcccccc-----CCHHHHHHHHHh
Confidence 4568899999999999986541 1234567899999999999899999999999766543 357889988865
Q ss_pred hCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCE
Q 013195 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQ 347 (448)
Q Consensus 269 ~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R-~~t~e~~~~~i~~ir~~~pgi~ 347 (448)
.. +...+.+. +|...+.+. +..+. ..+ ..++.++++|.+++..+.+.+ +.+.+++.+.++.++++ |+.
T Consensus 86 -~~--gi~~v~it-TNG~ll~~~---~~~L~-~~g-l~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~--G~~ 154 (334)
T TIGR02666 86 -LP--GIEDIALT-TNGLLLARH---AKDLK-EAG-LKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAA--GLE 154 (334)
T ss_pred -cC--CCCeEEEE-eCchhHHHH---HHHHH-HcC-CCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHc--CCC
Confidence 22 33356664 566544433 33333 333 468999999999999999985 57999999999999999 875
Q ss_pred -EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHH
Q 013195 348 -IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407 (448)
Q Consensus 348 -i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~ 407 (448)
+...+++ ++|.+++++.+.++++.+++++ +.+..|+|..++..+... .++.++..+++
T Consensus 155 ~v~in~vv-~~g~n~~ei~~l~~~~~~~gv~-~~~ie~mp~~~~~~~~~~~~~~~~ei~~~l 214 (334)
T TIGR02666 155 PVKLNTVV-MRGVNDDEIVDLAEFAKERGVT-LRFIELMPLGEGNGWREKKFVSADEILERL 214 (334)
T ss_pred cEEEEEEE-eCCCCHHHHHHHHHHHHhcCCe-EEEEeccCCCCCccchhhcccCHHHHHHHH
Confidence 6666544 4889999999999999999985 788889999888654333 45555544443
No 90
>PTZ00413 lipoate synthase; Provisional
Probab=99.53 E-value=9.6e-13 Score=129.80 Aligned_cols=184 Identities=18% Similarity=0.267 Sum_probs=137.2
Q ss_pred cEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC-CCHHHHHHHHHHhC
Q 013195 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAEL 270 (448)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~-~~l~~ll~~l~~~~ 270 (448)
...|+-.+..|+.+|.||++.... +....+++++++.++...+.|.+.+++++.+-... .|.+ ..+.+.+++|.+..
T Consensus 149 tATfmilG~~CTr~C~FCaqstg~-~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL-~D~ga~~~a~~I~~Ir~~~ 226 (398)
T PTZ00413 149 TATIMVMGDHCTRGCRFCSVKTSR-KPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDL-PDGGASHVARCVELIKESN 226 (398)
T ss_pred eeEeeecCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCC-ChhhHHHHHHHHHHHHccC
Confidence 344667789999999999987533 24556899999999999999999888887642111 1111 35777777776532
Q ss_pred CCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHh-CCCCEE
Q 013195 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIEL-VPGMQI 348 (448)
Q Consensus 271 ~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R-~~t~e~~~~~i~~ir~~-~pgi~i 348 (448)
+ .+.+..+-|+.... .+.+..+.. ++ ...++-.+|| +++....++. ++++++.+++++.+++. -+|+.+
T Consensus 227 p-----~~~IevligDf~g~-~e~l~~L~e-AG-~dvynHNLET-v~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~t 297 (398)
T PTZ00413 227 P-----ELLLEALVGDFHGD-LKSVEKLAN-SP-LSVYAHNIEC-VERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLT 297 (398)
T ss_pred C-----CCeEEEcCCccccC-HHHHHHHHh-cC-CCEEeccccc-CHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceE
Confidence 2 33444344533211 123444443 34 5788999999 8999999995 68999999999999998 478999
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEec-eeC
Q 013195 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF-YPR 387 (448)
Q Consensus 349 ~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~-~p~ 387 (448)
.+.+|+| +|||++|+.+++..+.+++++.+.+.+| .|-
T Consensus 298 cSGiIVG-LGET~eEvie~m~dLrelGVDivtIGQYL~Ps 336 (398)
T PTZ00413 298 KSSIMLG-LGETEEEVRQTLRDLRTAGVSAVTLGQYLQPT 336 (398)
T ss_pred eeeeEec-CCCCHHHHHHHHHHHHHcCCcEEeeccccCCC
Confidence 9999999 5999999999999999999999999665 443
No 91
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.53 E-value=3.4e-13 Score=148.09 Aligned_cols=187 Identities=16% Similarity=0.300 Sum_probs=137.8
Q ss_pred EEEeCCCCCCCccceeeCccCC--CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCC
Q 013195 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (448)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~ 272 (448)
.|.+|.+|+.+|.||.+....+ ....+++|+|+++++...+.|+++|.+++..-..+. ...+.+++++|++.++
T Consensus 529 ~In~TN~C~~~C~FCafs~~~~~~~~y~Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~~~---~~~y~~lir~IK~~~p- 604 (843)
T PRK09234 529 NINFTNICYTGCRFCAFAQRKTDADAYTLSLDEVADRAWEAWVAGATEVCMQGGIHPELP---GTGYADLVRAVKARVP- 604 (843)
T ss_pred ceecCCCCCCCCcccccccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcC---HHHHHHHHHHHHHhCC-
Confidence 4667999999999999875432 244579999999999999999999999875322221 1356788888887654
Q ss_pred CCcceEEEeecCCcChh-------HHHHHHHHHHhCCCcccccc-cccCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHhC
Q 013195 273 DGSTMLRIGMTNPPFIL-------EHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELV 343 (448)
Q Consensus 273 ~~~~~iri~~~~p~~i~-------~~l~el~~l~~~~~~~~~l~-iglES~s~~vLk~m~R-~~t~e~~~~~i~~ir~~~ 343 (448)
+ +.+....|..+. -..++....++.+++ ..++ -+-|-.++++.+.+.+ +.+.+++.++++.+++.
T Consensus 605 -~---i~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGL-ds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~l- 678 (843)
T PRK09234 605 -S---MHVHAFSPMEIVNGAARLGLSIREWLTALREAGL-DTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEV- 678 (843)
T ss_pred -C---eeEEecChHHHHHHHHHcCCCHHHHHHHHHHhCc-CccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHc-
Confidence 2 233222221111 011223334445453 4444 3666677777777765 46889999999999999
Q ss_pred CCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecee----CCCCccc
Q 013195 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP----RPGTPAA 393 (448)
Q Consensus 344 pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p----~pGT~~~ 393 (448)
|+.+++.+|+|+ +||.+++.+.+.++++++.+..+|..|.| -|+||++
T Consensus 679 -Gi~~~stmm~G~-~Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~ 730 (843)
T PRK09234 679 -GLRSSSTMMYGH-VDTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLY 730 (843)
T ss_pred -CCCcccceEEcC-CCCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCcc
Confidence 999999999998 79999999999999999999899999998 6889885
No 92
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.53 E-value=1.4e-12 Score=128.84 Aligned_cols=198 Identities=12% Similarity=0.170 Sum_probs=143.3
Q ss_pred EEEEEeCCCCCCCccceeeCccCCC-ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCC
Q 013195 193 VEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg~-~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~ 271 (448)
...|.++.+|+.+|.||..+..... .+..+.+++.+.++.+...|++.|.|+|++.... .++.++++.+.+.
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~-----~~l~~iv~~l~~~-- 83 (302)
T TIGR02668 11 SLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASEFGVRKVKITGGEPLLR-----KDLIEIIRRIKDY-- 83 (302)
T ss_pred eEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHHcCCCEEEEECcccccc-----cCHHHHHHHHHhC--
Confidence 4578999999999999976543222 3567899998888888888999999999776543 3578888887652
Q ss_pred CCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCE-EEE
Q 013195 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IAT 350 (448)
Q Consensus 272 ~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~-i~~ 350 (448)
+...+.+. +|...+.+. +..+.+ .+ +.++.++++|.+++..+.++++.+.+++.+.++.+++. |+. +..
T Consensus 84 --g~~~v~i~-TNG~ll~~~---~~~l~~-~g-~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~--G~~~v~i 153 (302)
T TIGR02668 84 --GIKDVSMT-TNGILLEKL---AKKLKE-AG-LDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDA--GLTPVKL 153 (302)
T ss_pred --CCceEEEE-cCchHHHHH---HHHHHH-CC-CCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHc--CCCcEEE
Confidence 33355554 565433332 233333 33 46899999999999999999888999999999999999 775 655
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCc-ccCCCCCCHHHHHHHHHH
Q 013195 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP-AARMKKVPSAVVKKRSRE 409 (448)
Q Consensus 351 ~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~-~~~~~~v~~~~~~~R~~~ 409 (448)
.+++ +||++.+++.+.++++.+++++ +++..|+|..... .+.....+.+...+.+.+
T Consensus 154 ~~v~-~~g~n~~ei~~~~~~~~~~g~~-~~~ie~~p~~~~~~~~~~~~~~~~~i~~~l~~ 211 (302)
T TIGR02668 154 NMVV-LKGINDNEIPDMVEFAAEGGAI-LQLIELMPPGEGEKEFKKYHEDIDPIEEELEK 211 (302)
T ss_pred EEEE-eCCCCHHHHHHHHHHHHhcCCE-EEEEEEeECCCCccchhhceecHHHHHHHHHH
Confidence 5444 6899999999999999999985 7888888875332 222223454444444433
No 93
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.51 E-value=1.8e-12 Score=128.83 Aligned_cols=185 Identities=17% Similarity=0.238 Sum_probs=139.2
Q ss_pred CCCcEEEEEeCCCCCCCccceeeCccCCC--ccccCHHHHHHHHHHHHHC-CCcEEEEEecCCCCCCCCCCCCHHHHHHH
Q 013195 189 RNKFVEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNA 265 (448)
Q Consensus 189 ~~~~~~~i~isrGC~~~CsFC~~~~~rg~--~rsr~~e~Iv~ei~~l~~~-G~~ei~~~~~~~~~yg~d~~~~l~~ll~~ 265 (448)
+.+..+.+.+++||+.+|.||..+...|. ....+.+++.+-++.+.+. |+.+|.|+|+|.+.... ..+.++++.
T Consensus 85 kyp~rvll~vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~---~~L~~ll~~ 161 (321)
T TIGR03822 85 RYPDRVLLKPVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWEVILTGGDPLVLSP---RRLGDIMAR 161 (321)
T ss_pred CCCCEEEEEecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccEEEEeCCCcccCCH---HHHHHHHHH
Confidence 44567788999999999999987654443 2344667777777777655 89999999988776532 357889988
Q ss_pred HHHhCCCCCcceEEEee----cCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHH
Q 013195 266 IVAELPPDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341 (448)
Q Consensus 266 l~~~~~~~~~~~iri~~----~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~ 341 (448)
+.+ ++ ....+|+++ .+|..+++.+ .+.++..+ + .+.+++++.+++-+ .++..++++.+++
T Consensus 162 l~~-i~--~v~~iri~Tr~~v~~p~rit~el---l~~L~~~g-~-~v~i~l~~~h~~el--------~~~~~~ai~~L~~ 225 (321)
T TIGR03822 162 LAA-ID--HVKIVRFHTRVPVADPARVTPAL---IAALKTSG-K-TVYVALHANHAREL--------TAEARAACARLID 225 (321)
T ss_pred HHh-CC--CccEEEEeCCCcccChhhcCHHH---HHHHHHcC-C-cEEEEecCCChhhc--------CHHHHHHHHHHHH
Confidence 876 44 455678875 2566666544 33443333 2 47799999876543 3789999999999
Q ss_pred hCCCCEEEE-EEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccC
Q 013195 342 LVPGMQIAT-DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394 (448)
Q Consensus 342 ~~pgi~i~~-~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~ 394 (448)
+ |+.+.. .+++.-.+++.+++.+.++++.++++...+++.+.|.+||..+.
T Consensus 226 ~--Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~ 277 (321)
T TIGR03822 226 A--GIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHFR 277 (321)
T ss_pred c--CCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCccccc
Confidence 9 998766 45555569999999999999999999999999999999986653
No 94
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.47 E-value=6.7e-12 Score=127.16 Aligned_cols=199 Identities=18% Similarity=0.258 Sum_probs=144.8
Q ss_pred EEEEEeCCCCCCCccceeeCccC---CCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHh
Q 013195 193 VEILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~r---g~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~ 269 (448)
+..|.++.+|+.+|.||..+... .+....+.+++.+.++.+.+.|++.|.|+|.....+ .++.++++.+.+
T Consensus 59 ~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGEPllr-----~dl~eli~~l~~- 132 (373)
T PLN02951 59 YLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEPTLR-----KDIEDICLQLSS- 132 (373)
T ss_pred EEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcch-----hhHHHHHHHHHh-
Confidence 44578999999999999754211 122457889999999888889999999998665433 357888888865
Q ss_pred CCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-EE
Q 013195 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QI 348 (448)
Q Consensus 270 ~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi-~i 348 (448)
.+ +...+.+. +|...+.+. +.++.. .+ ...+.+.++|.+++..+.+.|+...+++.+.++.+++. |+ .+
T Consensus 133 ~~--gi~~i~it-TNG~lL~~~---~~~L~~-aG-ld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~--G~~~v 202 (373)
T PLN02951 133 LK--GLKTLAMT-TNGITLSRK---LPRLKE-AG-LTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIEL--GYNPV 202 (373)
T ss_pred cC--CCceEEEe-eCcchHHHH---HHHHHh-CC-CCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHc--CCCcE
Confidence 33 33345553 566544443 333433 33 46899999999999999998877889999999999998 75 34
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCCCCCHHHHHHHHHH
Q 013195 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 409 (448)
Q Consensus 349 ~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~ 409 (448)
...+ +-++|.+++++.+.++++++.++ .+.+..|+|..|++...-..++.++..+++.+
T Consensus 203 kin~-vv~~g~N~~Ei~~li~~a~~~gi-~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~ 261 (373)
T PLN02951 203 KVNC-VVMRGFNDDEICDFVELTRDKPI-NVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQ 261 (373)
T ss_pred EEEE-EecCCCCHHHHHHHHHHHHhCCC-eEEEEEcccCCCCccccccCCCHHHHHHHHHH
Confidence 4333 34578899999999999999886 58889999999996443335666665555444
No 95
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.46 E-value=2.1e-12 Score=141.85 Aligned_cols=197 Identities=17% Similarity=0.214 Sum_probs=140.2
Q ss_pred EEEEeCCCCCCCccceeeCccCC--CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCC------------CCC-CCC
Q 013195 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG------------RDI-GVN 258 (448)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg------------~d~-~~~ 258 (448)
.+|..|..|..+|.||.+....+ .....++|+|++.++...+.|++++.|++..-.... .+. -..
T Consensus 73 ~~In~Tn~C~~~C~YCaF~~~~~~~~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey 152 (843)
T PRK09234 73 VFIPLTRLCRDRCHYCTFATVPGKLEAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDY 152 (843)
T ss_pred EEecCCCCCCCCCCcCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHH
Confidence 46778999999999999875433 345679999999999999999999999876433211 100 023
Q ss_pred HHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHh------cCCCCCHHHH
Q 013195 259 LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA------MNREYTLSDF 332 (448)
Q Consensus 259 l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~------m~R~~t~e~~ 332 (448)
+.++++.+.+..+ -..-+.++. ++. +++..+.+.+ . ..++.+|+.+++..+. ...+...++.
T Consensus 153 ~~~~~~~ik~~~g--l~p~i~~G~-----ls~--~E~~~Lk~~g-~--s~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~R 220 (843)
T PRK09234 153 VRAMAIRVLEETG--LLPHLNPGV-----MSW--SELARLKPVA-P--SMGMMLETTSRRLFEEKGGPHYGSPDKDPAVR 220 (843)
T ss_pred HHHHHHHHHHhcC--CCceeeeCC-----CCH--HHHHHHHHhc-C--cCCCCHHHHHHHHHHhhcccccCCCCCCHHHH
Confidence 4555666654322 112333332 332 2244443322 1 2467788888776543 2233467788
Q ss_pred HHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhc-----CCCeEEEEeceeCCCCcccCCCCCCHHHHHH
Q 013195 333 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY-----KFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405 (448)
Q Consensus 333 ~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l-----~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~ 405 (448)
+++++.+++. |+.+++.+|+|+ |||.+|..+.+..++++ ++..+-+..|.|.||||+...+..+.++..+
T Consensus 221 L~ti~~A~~l--Gi~~tsG~L~Gi-GEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr 295 (843)
T PRK09234 221 LRVLEDAGRL--SVPFTTGILIGI-GETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLA 295 (843)
T ss_pred HHHHHHHHHc--CCCccceEEEEC-CCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHH
Confidence 9999999999 999999999999 99999999999999999 5778889999999999998877666655433
No 96
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.38 E-value=2e-10 Score=115.11 Aligned_cols=184 Identities=20% Similarity=0.309 Sum_probs=128.0
Q ss_pred CCcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHH-CCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHH
Q 013195 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (448)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~-~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~ 268 (448)
.....+|.++.||+.+|.||.... .|..|..++++|++++..+.. .++++|+|+|. |.+. .++.++++.+..
T Consensus 101 ~~~t~cvSsq~GC~~~C~FC~tg~-~~~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~-----GEPl-~n~~~vi~~l~~ 173 (349)
T PRK14463 101 DRNTLCISSQVGCAMGCAFCLTGT-FRLTRNLTTAEIVNQVCAVKRDVPVRNIVFMGM-----GEPL-ANLDNVIPALQI 173 (349)
T ss_pred CCcEEEEEecCCcCCCCccCCCCC-CCCCCCCCHHHHHHHHHHHHhcCCccEEEEecC-----Ccch-hcHHHHHHHHHH
Confidence 356789999999999999998653 355788999999999987665 47899999882 3322 244555555543
Q ss_pred hCCCCC----cceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhc---CCCCCHHHHHHHHHHHHH
Q 013195 269 ELPPDG----STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLIE 341 (448)
Q Consensus 269 ~~~~~~----~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m---~R~~t~e~~~~~i~~ir~ 341 (448)
.....+ ...++++ ++. +.+. +.++..... ..+.+.+.|.+++..+.+ +|+++.+++.+++.....
T Consensus 174 l~~~~gl~~s~r~itVs-TnG--l~~~---i~~l~~~~~--~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~ 245 (349)
T PRK14463 174 LTDPDGLQFSTRKVTVS-TSG--LVPE---MEELGREVT--VNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPL 245 (349)
T ss_pred hhcccccCcCCceEEEE-CCC--chHH---HHHHhhccC--eEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHH
Confidence 211001 1355554 222 2232 444443322 356789999999999886 788999999998887766
Q ss_pred hC-CCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCC
Q 013195 342 LV-PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390 (448)
Q Consensus 342 ~~-pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT 390 (448)
.. ..+.+. .++++-..++++++.+..++++.++. .+++-+|.|.+|.
T Consensus 246 ~~~~~v~ie-yvLI~GvNDs~e~~~~L~~ll~~l~~-~vnlIPyn~~~~~ 293 (349)
T PRK14463 246 PGRRKITIE-YVMIRGLNDSLEDAKRLVRLLSDIPS-KVNLIPFNEHEGC 293 (349)
T ss_pred hcCCeEEEE-EEEeCCCCCCHHHHHHHHHHHhccCc-eEEEEecCCCCCC
Confidence 42 123444 45555568999999999999999875 7899999988774
No 97
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.38 E-value=3.9e-11 Score=114.15 Aligned_cols=177 Identities=16% Similarity=0.167 Sum_probs=121.8
Q ss_pred EEEEeCCCCCCCccceeeCccCC--CccccCHHHHHHHHHHHHHCC---CcEEEEEecCCCCCCCCCCCCHHHHHHHHHH
Q 013195 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADG---VKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (448)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~ei~~l~~~G---~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~ 268 (448)
..+-++.|||++|.||..+.... ..+..+++++++++..+...+ ...|.|+|++...+. + .+.++++.+.+
T Consensus 17 ~~~v~~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~~-~---~~~~li~~~~~ 92 (235)
T TIGR02493 17 RFVVFMQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQP-E---FLSELFKACKE 92 (235)
T ss_pred eEEEEECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeCcccccCH-H---HHHHHHHHHHH
Confidence 45577889999999998664322 235679999999998876542 257899887665541 1 23467777754
Q ss_pred hCCCCCcceEEEeecCCcCh--hHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Q 013195 269 ELPPDGSTMLRIGMTNPPFI--LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346 (448)
Q Consensus 269 ~~~~~~~~~iri~~~~p~~i--~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi 346 (448)
. + ..+.+. +|.... .+. +.+++.. ...+.+++++.+++..+.+.+. +.+++.+.++.+++. |+
T Consensus 93 ~----g-~~~~i~-TNG~~~~~~~~---~~~ll~~---~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~--g~ 157 (235)
T TIGR02493 93 L----G-IHTCLD-TSGFLGGCTEA---ADELLEY---TDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKR--NK 157 (235)
T ss_pred C----C-CCEEEE-cCCCCCccHHH---HHHHHHh---CCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhC--CC
Confidence 2 2 234443 344211 333 3334432 3468899999999998877554 788999999999998 87
Q ss_pred EEEEEEEEeCCC--CCHHHHHHHHHHHHhcC-CCeEEEEeceeCCCCc
Q 013195 347 QIATDIICGFPG--ETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGTP 391 (448)
Q Consensus 347 ~i~~~~IvG~Pg--ET~ed~~~tl~~i~~l~-~~~v~i~~~~p~pGT~ 391 (448)
.+...+++ +|| ++.+++++.++|+.+++ ...+++.+|.|. |++
T Consensus 158 ~~~v~~vv-~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~~~~-g~~ 203 (235)
T TIGR02493 158 PIWIRYVL-VPGYTDSEEDIEALAEFVKTLPNVERVEVLPYHQL-GVY 203 (235)
T ss_pred cEEEEEee-eCCcCCCHHHHHHHHHHHHhCCCCceEEecCCCcc-cHH
Confidence 76666555 375 57899999999999998 466777777664 443
No 98
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.35 E-value=1.8e-10 Score=115.74 Aligned_cols=189 Identities=18% Similarity=0.235 Sum_probs=128.7
Q ss_pred CCcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHH------CCCcEEEEEe-cCCCCCCCCCCCCHHHH
Q 013195 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA------DGVKEVWLSS-EDTGAYGRDIGVNLPIL 262 (448)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~------~G~~ei~~~~-~~~~~yg~d~~~~l~~l 262 (448)
...+.+|.++.||+.+|.||..+.. |..|..++++|++++..... .|+..|+|+| +..... ...+.++
T Consensus 107 ~~~t~ciSsqvGC~~~C~FC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEPLln----~~~v~~~ 181 (356)
T PRK14455 107 YGNSVCVTTQVGCRIGCTFCASTLG-GLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEPFDN----YDNVMDF 181 (356)
T ss_pred CCceEEEECCCCCCCCCCcCCCCCC-CCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEeccccccCC----HHHHHHH
Confidence 3567899999999999999998864 45788999999999986422 3578888887 332221 0245666
Q ss_pred HHHHHHhCCC-CCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHh---cCCCCCHHHHHHHHHH
Q 013195 263 LNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA---MNREYTLSDFRTVVDT 338 (448)
Q Consensus 263 l~~l~~~~~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~---m~R~~t~e~~~~~i~~ 338 (448)
++.+.+.... .+...+.+++ +. +.+. +..+.+... -..+.+.+.+.+++..+. ++|+++.+++.+.++.
T Consensus 182 l~~l~~~~g~~~s~r~itvsT-~G--~~~~---i~~l~d~~l-~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~ 254 (356)
T PRK14455 182 LRIINDDKGLAIGARHITVST-SG--IAPK---IYDFADEGL-QINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEY 254 (356)
T ss_pred HHHHhcccCcccCCCceEEEe-cC--chHh---HHHHHhccc-CeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 6666532100 0112445543 21 1222 333443321 124678999999999975 5788999999999998
Q ss_pred HHHhCCCCEEEE-EEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 013195 339 LIELVPGMQIAT-DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (448)
Q Consensus 339 ir~~~pgi~i~~-~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~ 392 (448)
+.+.. +..+.. .++++-..++++++++..+|++.++ .++++.+|.|.++.+.
T Consensus 255 ~~~~~-~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~-~~VnLIPynp~~~~ky 307 (356)
T PRK14455 255 YIEKT-NRRVTFEYILLGGVNDQVEHAEELADLLKGIK-CHVNLIPVNPVPERDY 307 (356)
T ss_pred HHHhc-CCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-CcEEEEecCcCCCCCC
Confidence 87641 334443 4555556899999999999999987 5789999999988753
No 99
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.34 E-value=3.8e-10 Score=111.99 Aligned_cols=183 Identities=15% Similarity=0.280 Sum_probs=129.8
Q ss_pred CcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHC-CCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHh
Q 013195 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (448)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~-G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~ 269 (448)
..+.+|.++.||+.+|.||..... |-.|..++++|++++..+.+. ++..|+|+|. |... .++.++++.+...
T Consensus 102 r~t~cvSsQvGC~~~C~FC~Tg~~-g~~rnLt~~EIl~Qv~~~~~~~~i~nIvfmGm-----GEPL-~N~d~vi~al~~l 174 (345)
T PRK14466 102 RATLCVSSQVGCKMNCLFCMTGKQ-GFTGNLTAAQILNQIYSLPERDKLTNLVFMGM-----GEPL-DNLDEVLKALEIL 174 (345)
T ss_pred ceEEEEEcCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHhhhhcCCCCeEEEeee-----CcCc-ccHHHHHHHHHHH
Confidence 567789999999999999997763 556778999999999877543 6899999882 3322 2345555555432
Q ss_pred CCCCC----cceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcC---CCCCHHHHHHHHHHHHHh
Q 013195 270 LPPDG----STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIEL 342 (448)
Q Consensus 270 ~~~~~----~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~---R~~t~e~~~~~i~~ir~~ 342 (448)
....+ ...+.+++. . +...+ .+++.... ..+.+.+-|.+++..+.+. +.|+.+++.++++...+.
T Consensus 175 ~~~~g~~~s~r~ItVsT~-G--~~~~i---~~l~~~~~--~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~ 246 (345)
T PRK14466 175 TAPYGYGWSPKRITVSTV-G--LKKGL---KRFLEESE--CHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFS 246 (345)
T ss_pred hhccccCcCCceEEEEcC-C--CchHH---HHHhhccC--cEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHh
Confidence 11001 236666533 2 22222 22222222 2667888899999997765 458899999998887665
Q ss_pred CCC-CEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCC
Q 013195 343 VPG-MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390 (448)
Q Consensus 343 ~pg-i~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT 390 (448)
..+ +.+..-+|=|+ .+++++..+..++++.++ .++++-+|.|.||.
T Consensus 247 ~~rri~~Ey~Li~gv-ND~~e~a~~L~~ll~~~~-~~VNLIp~Np~~~~ 293 (345)
T PRK14466 247 KQRRVSFEYIVFKGL-NDSLKHAKELVKLLRGID-CRVNLIRFHAIPGV 293 (345)
T ss_pred hCCEEEEEEEEeCCC-CCCHHHHHHHHHHHcCCC-ceEEEEecCCCCCC
Confidence 323 67777777776 899999999999999887 68999999999996
No 100
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.31 E-value=6.1e-10 Score=113.57 Aligned_cols=178 Identities=12% Similarity=0.146 Sum_probs=134.3
Q ss_pred CCcEEEEEeCCCCCCCccceeeCccC-CCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHH
Q 013195 190 NKFVEILPINVGCLGACTYCKTKHAR-GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (448)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~r-g~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~ 268 (448)
.+....+.++..|+.+|.||...... ...+..+.+++.+-++.+.+.|+..|.|+|++.+.+ .++.++++.+.+
T Consensus 14 ~P~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~-----~~~~~il~~~~~ 88 (378)
T PRK05301 14 PPLWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARALGALQLHFSGGEPLLR-----KDLEELVAHARE 88 (378)
T ss_pred CCeEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHHcCCcEEEEECCccCCc-----hhHHHHHHHHHH
Confidence 45678899999999999999765322 224567888888888888888999999998776654 357888888765
Q ss_pred hCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCC-CCHHHHHHHHHHHHHhCCCCE
Q 013195 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGMQ 347 (448)
Q Consensus 269 ~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~-~t~e~~~~~i~~ir~~~pgi~ 347 (448)
. + ..+.+ .+|...++++. +..+.+. + ...+.+++++.++++.+.+++. .+.+++.+.++.+++. |+.
T Consensus 89 ~----g-~~~~i-~TNG~ll~~~~--~~~L~~~-g-~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~--g~~ 156 (378)
T PRK05301 89 L----G-LYTNL-ITSGVGLTEAR--LAALKDA-G-LDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAH--GYP 156 (378)
T ss_pred c----C-CcEEE-ECCCccCCHHH--HHHHHHc-C-CCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHC--CCc
Confidence 2 2 23344 36776666543 3334333 3 4689999999999998887655 4899999999999999 887
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecee
Q 013195 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386 (448)
Q Consensus 348 i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p 386 (448)
+...++ ++.++.+++.+.++++.+++++.+.+..+.+
T Consensus 157 v~i~~v--v~~~N~~~i~~~~~~~~~lgv~~i~~~~~~~ 193 (378)
T PRK05301 157 LTLNAV--IHRHNIDQIPRIIELAVELGADRLELANTQY 193 (378)
T ss_pred eEEEEE--eecCCHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 665544 4688999999999999999999888765544
No 101
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.28 E-value=9.1e-10 Score=111.45 Aligned_cols=175 Identities=12% Similarity=0.151 Sum_probs=130.5
Q ss_pred CcEEEEEeCCCCCCCccceeeCccCC-CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHh
Q 013195 191 KFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (448)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg-~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~ 269 (448)
+....+.++..|+.+|.||..+.... +....+.+++.+-++.+.+.|+..|.|+|++.+.+ .++.++++.+.+.
T Consensus 6 P~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~-----~~~~~ii~~~~~~ 80 (358)
T TIGR02109 6 PLWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAELGVLQLHFSGGEPLAR-----PDLVELVAHARRL 80 (358)
T ss_pred CcEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHhcCCcEEEEeCcccccc-----ccHHHHHHHHHHc
Confidence 45678999999999999997653222 23456788888778888888999999998776653 3578888888653
Q ss_pred CCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCC-CCHHHHHHHHHHHHHhCCCCEE
Q 013195 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGMQI 348 (448)
Q Consensus 270 ~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~-~t~e~~~~~i~~ir~~~pgi~i 348 (448)
+ ..+.+. +|...+++.. +..+.+. + +..|.|++++.++++.+.+++. .+.+.+.+.++.++++ |+.+
T Consensus 81 ----g-~~~~l~-TNG~ll~~e~--~~~L~~~-g-~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~--g~~v 148 (358)
T TIGR02109 81 ----G-LYTNLI-TSGVGLTEAR--LDALADA-G-LDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAA--GLPL 148 (358)
T ss_pred ----C-CeEEEE-eCCccCCHHH--HHHHHhC-C-CCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhC--CCce
Confidence 2 244443 5666666543 3334433 3 4689999999999998887553 4788999999999998 8776
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEec
Q 013195 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384 (448)
Q Consensus 349 ~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~ 384 (448)
...++ +..++.+++.+.++++.+++++.+.+...
T Consensus 149 ~v~~v--v~~~N~~~l~~~~~~~~~lg~~~i~~~~~ 182 (358)
T TIGR02109 149 TLNFV--IHRHNIDQIPEIIELAIELGADRVELATT 182 (358)
T ss_pred EEEEE--eccCCHHHHHHHHHHHHHcCCCEEEEEee
Confidence 55444 46889999999999999999998877644
No 102
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=99.27 E-value=1.3e-10 Score=116.76 Aligned_cols=192 Identities=17% Similarity=0.274 Sum_probs=134.6
Q ss_pred EEEEeCCCCCCCccceeeCccCC--CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCC
Q 013195 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (448)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~ 271 (448)
.+|..|.=|.++|+||.+....+ .-...++++|.++++.+.+.|++|+.|+++.-..++.+ .+.++++.+.+.++
T Consensus 61 ~~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~---y~~~~~~~ik~~~p 137 (370)
T COG1060 61 RNINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLE---YYEELFRTIKEEFP 137 (370)
T ss_pred ecCCcchhhcCCCCccccccCCCCccccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchH---HHHHHHHHHHHhCc
Confidence 45678888999999999876543 23467899999999999999999999998755444332 45788888887655
Q ss_pred CCCcceEEEeec------CCcChhHHHHH-HHHHHhCCCcccccccccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhC
Q 013195 272 PDGSTMLRIGMT------NPPFILEHLKE-IAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-REYTLSDFRTVVDTLIELV 343 (448)
Q Consensus 272 ~~~~~~iri~~~------~p~~i~~~l~e-l~~l~~~~~~~~~l~iglES~s~~vLk~m~-R~~t~e~~~~~i~~ir~~~ 343 (448)
......++.. +...+ ..++ +..|. .+++-...-.|-|=.++++.+.+. .+.+.+++.++++.+.+.
T Consensus 138 --~~~i~a~s~~ei~~~~~~~~~--s~~E~l~~Lk-~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~l- 211 (370)
T COG1060 138 --DLHIHALSAGEILFLAREGGL--SYEEVLKRLK-EAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRL- 211 (370)
T ss_pred --chhhcccCHHHhHHHHhccCC--CHHHHHHHHH-HcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHc-
Confidence 3222222211 11111 1123 44444 445433444555556778776664 457999999999999999
Q ss_pred CCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC-----CCeEEEEeceeCCCC-cccCCC
Q 013195 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGT-PAARMK 396 (448)
Q Consensus 344 pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~-----~~~v~i~~~~p~pGT-~~~~~~ 396 (448)
||...+.+++|. +||.+|..+++..++++. +..+.+..|.|.+++ ++...+
T Consensus 212 -GI~~tatml~Gh-~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~ 268 (370)
T COG1060 212 -GIPTTATMLLGH-VETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVP 268 (370)
T ss_pred -CCCccceeEEEe-cCCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCC
Confidence 999999999998 999999999999998883 444555566777777 444444
No 103
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.24 E-value=1.5e-09 Score=112.23 Aligned_cols=186 Identities=22% Similarity=0.284 Sum_probs=130.2
Q ss_pred cEEEEEeCCCCCCCccceeeCcc-----C-C-CccccCHHHHHHHHHHHHHC--CCcEEEEEe-cCCCCCCCCCCCCHHH
Q 013195 192 FVEILPINVGCLGACTYCKTKHA-----R-G-HLGSYTVESLVGRVRTVIAD--GVKEVWLSS-EDTGAYGRDIGVNLPI 261 (448)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~-----r-g-~~rsr~~e~Iv~ei~~l~~~--G~~ei~~~~-~~~~~yg~d~~~~l~~ 261 (448)
.+..+.++.||+.+|.||...+. + | ..+..+++++++.++.+.+. +...|.|+| .+...+. ....+
T Consensus 24 ~r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~----e~~~~ 99 (442)
T TIGR01290 24 ARMHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANI----GKTFQ 99 (442)
T ss_pred CEEEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCc----cccHH
Confidence 45678999999999999986432 1 2 13557899999999988764 567788887 4444331 23467
Q ss_pred HHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhc-------CCCCC------
Q 013195 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM-------NREYT------ 328 (448)
Q Consensus 262 ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m-------~R~~t------ 328 (448)
+++.+.+.++ ...+.++ +|...+.+.+ .++...+ ..++.+.+-+.++++.+.+ +|.++
T Consensus 100 ~l~~~~~~~~---~i~i~ls-TNG~~l~e~i---~~L~~~g--vd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~ 170 (442)
T TIGR01290 100 TLELVARQLP---DVKLCLS-TNGLMLPEHV---DRLVDLG--VGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAAD 170 (442)
T ss_pred HHHHHHHhcC---CCeEEEE-CCCCCCHHHH---HHHHHCC--CCeEEEeccCCCHHHHhhcchhhccccccccCcchHH
Confidence 7777776543 2345554 5554334433 3343332 4689999999999999765 23343
Q ss_pred --HHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCC--CCccc
Q 013195 329 --LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP--GTPAA 393 (448)
Q Consensus 329 --~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~p--GT~~~ 393 (448)
.+...+.++.+.+. |+.+...+++ +||.+++++.+..+++++++...+++.+|.|.| ||+..
T Consensus 171 il~e~~l~~l~~l~~~--G~~v~v~~vl-IpGiND~~i~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~ 236 (442)
T TIGR01290 171 LLIERQLEGLEKLTER--GILVKVNSVL-IPGINDEHLVEVSKQVKELGAFLHNVMPLISAPEHGTVYG 236 (442)
T ss_pred HHHHHHHHHHHHHHhC--CCeEEEEEEe-eCCcCHHHHHHHHHHHHhCCCcEEEeecCCCccccCCccC
Confidence 34556788888888 8765554333 378889999999999999998889999999888 98854
No 104
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=99.24 E-value=4.1e-10 Score=105.48 Aligned_cols=182 Identities=19% Similarity=0.278 Sum_probs=133.1
Q ss_pred CCcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC-CCHHHHHHHHHH
Q 013195 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 268 (448)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~-~~l~~ll~~l~~ 268 (448)
+....|+-.+.-|..+|.||.+.+ |+....++++-..-++.....|.+.+++++.|-... .|.+ ..|.+.+++|.+
T Consensus 68 ~~tATFmImG~~CTR~C~FC~V~~--g~P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL-~DGGA~hfa~~i~~Ire 144 (306)
T COG0320 68 RGTATFMILGDICTRRCRFCDVKT--GRPNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDL-PDGGAQHFAECIRAIRE 144 (306)
T ss_pred CCceEEeeccchhccCCCccccCC--CCCCCCCCchHHHHHHHHHHhCCCeEEEEeeccccc-cccchHHHHHHHHHHHh
Confidence 344557778899999999999886 444455555555555556667999999998543221 1222 468999999987
Q ss_pred hCCCCCcceEEEeecCCcChhHHHHHHHHHHhC-CCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCE
Q 013195 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (448)
Q Consensus 269 ~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~-~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~ 347 (448)
..| ...++.+-|+..- ....+..+++. +.+++ =.+|+. ++....++++.+.+.-++.++.+++..|.+.
T Consensus 145 ~~P-----~t~iEvL~PDF~G-~~~al~~v~~~~pdV~n---HNvETV-prL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~ 214 (306)
T COG0320 145 LNP-----QTTIEVLTPDFRG-NDDALEIVADAGPDVFN---HNVETV-PRLYPRVRPGATYERSLSLLERAKELGPDIP 214 (306)
T ss_pred hCC-----CceEEEeCccccC-CHHHHHHHHhcCcchhh---cccccc-hhcccccCCCCcHHHHHHHHHHHHHhCCCcc
Confidence 543 4456656666443 22234444433 33333 366764 4555777888999999999999999988899
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEece
Q 013195 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385 (448)
Q Consensus 348 i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~ 385 (448)
..+.+|+|+ |||.+++.++++-+++.+.|.+.+.+|.
T Consensus 215 TKSgiMlGL-GEt~~Ev~e~m~DLr~~gvdilTiGQYl 251 (306)
T COG0320 215 TKSGLMVGL-GETDEEVIEVMDDLRSAGVDILTIGQYL 251 (306)
T ss_pred cccceeeec-CCcHHHHHHHHHHHHHcCCCEEEecccc
Confidence 999999999 9999999999999999999999998884
No 105
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.22 E-value=1.6e-09 Score=109.13 Aligned_cols=189 Identities=13% Similarity=0.220 Sum_probs=129.9
Q ss_pred CCcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHH--------HHCCCcEEEEEe-cCCCCCCCCCCCCHH
Q 013195 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV--------IADGVKEVWLSS-EDTGAYGRDIGVNLP 260 (448)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l--------~~~G~~ei~~~~-~~~~~yg~d~~~~l~ 260 (448)
...+..|.++.||+.+|+||..... |..|..+.++|++++..+ ...+++.|+|+| +....+ ..++.
T Consensus 119 ~~~t~ciSsq~GCnl~C~FC~tg~~-g~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEPLln----~d~v~ 193 (368)
T PRK14456 119 ERMTACISSQAGCALRCSFCATGQM-GFRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEPLLN----TDNVF 193 (368)
T ss_pred CceEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCccccC----HHHHH
Confidence 3567889999999999999987643 556778899999997443 135789999998 333222 12366
Q ss_pred HHHHHHHHh-CCC-CCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhc---C-CCCCHHHHHH
Q 013195 261 ILLNAIVAE-LPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---N-REYTLSDFRT 334 (448)
Q Consensus 261 ~ll~~l~~~-~~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m---~-R~~t~e~~~~ 334 (448)
++++.+.+. ... .+...+.+++ +. +.+. +.++.+. ++-..|.+.+.|.+++..+.+ + ++++.+++.+
T Consensus 194 ~~i~~l~~~~~~~~is~r~ItisT-~G--l~~~---i~~L~~~-gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~ 266 (368)
T PRK14456 194 EAVLTLSTRKYRFSISQRKITIST-VG--ITPE---IDRLATS-GLKTKLAVSLHSADQEKRERLMPQAARDYPLDELRE 266 (368)
T ss_pred HHHHHHhccccccCcCcCeeEEEC-CC--ChHH---HHHHHHc-CCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHH
Confidence 666666542 100 0123555553 32 3333 4444443 222378999999999999766 3 5889999999
Q ss_pred HHHH-HHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 013195 335 VVDT-LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (448)
Q Consensus 335 ~i~~-ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~ 392 (448)
.++. +.+.-..+.+..-+|-|+ .++++++.+.++|++.+. -.+++-+|.|.++.+.
T Consensus 267 ~i~~~~~~~g~~V~ieyvLI~Gv-NDs~eda~~L~~~l~~~~-~~VnlIpyn~~~~~~~ 323 (368)
T PRK14456 267 ALIGYASKTGEPVTLVYMLLEGI-NDSPEDARKLIRFASRFF-CKINLIDYNSIVNIKF 323 (368)
T ss_pred HHHHHHHhcCCeEEEEEEEEcCC-CCCHHHHHHHHHHHhcCC-CeeEEeeeccCCCCCC
Confidence 9985 444411245666667666 689999999999999985 4788899999888764
No 106
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.21 E-value=8.9e-10 Score=109.98 Aligned_cols=189 Identities=16% Similarity=0.209 Sum_probs=129.4
Q ss_pred CCCcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHC-CCcEEEEEecCCCCCCCCCCCCHHHHHHHHH
Q 013195 189 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (448)
Q Consensus 189 ~~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~-G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~ 267 (448)
+.+..+.+.++.||+.+|+||..+...+.....+.+++.+.++.+.+. |+++|.|+|+|...... ..+.++++.+.
T Consensus 110 ky~~rvll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d---~~L~~ll~~L~ 186 (331)
T TIGR00238 110 RYVNRALFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISGGDPLMAKD---HELEWLLKRLE 186 (331)
T ss_pred ecCCcEEEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHhCCCcCEEEEECCccccCCH---HHHHHHHHHHH
Confidence 345567899999999999999876543322233366666667666554 89999999988765422 23778888887
Q ss_pred HhCCCCCcceEEEeecC----CcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q 013195 268 AELPPDGSTMLRIGMTN----PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343 (448)
Q Consensus 268 ~~~~~~~~~~iri~~~~----p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~ 343 (448)
+ ++ ....+|+++-. |..+++. +.++++..+ +..+.+..-...+++ .++..++++.++++
T Consensus 187 ~-i~--~~~~IRi~tr~~~~~P~rit~e---l~~~L~~~~-~~~~~vsh~nh~~Ei---------~~~~~~ai~~L~~a- 249 (331)
T TIGR00238 187 E-IP--HLVRLRIGTRLPVVIPQRITDE---LCELLASFE-LQLMLVTHINHCNEI---------TEEFAEAMKKLRTV- 249 (331)
T ss_pred h-cC--CccEEEeecCCCccCchhcCHH---HHHHHHhcC-CcEEEEccCCChHhC---------CHHHHHHHHHHHHc-
Confidence 5 44 56688887643 4445554 444454433 234444433333321 37889999999999
Q ss_pred CCCE--EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCCCCCHHH
Q 013195 344 PGMQ--IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402 (448)
Q Consensus 344 pgi~--i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~~v~~~~ 402 (448)
|+. +.+-++-|. .++.+++.+..+.+.++++...+++.+.|..|+.-+ .+|.+.
T Consensus 250 -Gi~v~~qtvLl~gv-nD~~~~l~~L~~~l~~~gV~pyyl~~~~~~~g~~~f---~~~~~~ 305 (331)
T TIGR00238 250 -NVTLLNQSVLLRGV-NDRAQILAKLSIALFKVGIIPYYLHYLDKVQGAKHF---LVPDAE 305 (331)
T ss_pred -CCEEEeecceECCc-CCCHHHHHHHHHHHhhcCeecCeecCcCCCCCcccc---cCCHHH
Confidence 864 455666665 688899999999999999888889999999998443 344543
No 107
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.20 E-value=7.9e-10 Score=105.87 Aligned_cols=191 Identities=17% Similarity=0.276 Sum_probs=135.3
Q ss_pred EEEEEeCCCCCCC----ccceeeCccCCCccccCHHHHHHHHHHHHHC---CCcE--E-EEEecCCCCCCCCCC-CCHHH
Q 013195 193 VEILPINVGCLGA----CTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKE--V-WLSSEDTGAYGRDIG-VNLPI 261 (448)
Q Consensus 193 ~~~i~isrGC~~~----CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~---G~~e--i-~~~~~~~~~yg~d~~-~~l~~ 261 (448)
...|--++||.+. |.+|.++.- +.....+.++++.++....+. ...+ | +|+++.+.. ..+.+ .....
T Consensus 48 l~vILrT~GC~w~~~~gC~MCgY~~d-~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD-~~EVP~e~R~~ 125 (358)
T COG1244 48 LTVILRTRGCRWYREGGCYMCGYPAD-SAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLD-PEEVPREARRY 125 (358)
T ss_pred EEEEEecCCcceeccCCcceeccccc-cCCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCC-hhhCCHHHHHH
Confidence 3456679999763 999998753 235677899999999887764 1233 2 355543322 11111 12345
Q ss_pred HHHHHHHhCCCCCcceEEEeecCCcChhH-HHHHHHHHHhCCCcccccccccCCCCHHHH-HhcCCCCCHHHHHHHHHHH
Q 013195 262 LLNAIVAELPPDGSTMLRIGMTNPPFILE-HLKEIAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNREYTLSDFRTVVDTL 339 (448)
Q Consensus 262 ll~~l~~~~~~~~~~~iri~~~~p~~i~~-~l~el~~l~~~~~~~~~l~iglES~s~~vL-k~m~R~~t~e~~~~~i~~i 339 (448)
+++.|.+. + ....+-+. +.|+.+.+ .++++.+++... .-.+.||+||.+|++. ..||||.|.++|.++++.+
T Consensus 126 Il~~is~~-~--~v~~vvvE-SRpE~I~eE~l~e~~~il~gk--~~EvaIGLETanD~ire~sINKGftF~df~~A~~~i 199 (358)
T COG1244 126 ILERISEN-D--NVKEVVVE-SRPEFIREERLEEITEILEGK--IVEVAIGLETANDKIREDSINKGFTFEDFVRAAEII 199 (358)
T ss_pred HHHHHhhc-c--ceeEEEee-cCchhcCHHHHHHHHHhhCCc--eEEEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHH
Confidence 66666542 2 35677776 68998875 455555555433 4589999999999999 8999999999999999999
Q ss_pred HHhCCCCEEEEEEEEeCCCCCH----HHHHHHHHHHHhcCCCeEEEEeceeCCCCcccC
Q 013195 340 IELVPGMQIATDIICGFPGETD----EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394 (448)
Q Consensus 340 r~~~pgi~i~~~~IvG~PgET~----ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~ 394 (448)
+++ |+.+.+++++-.|.=|+ +|...++. ..+-..+.+++.+-+...||-+..
T Consensus 200 r~~--g~~vktYlllKP~FlSE~eAI~D~i~Si~-~~~~~~d~iSinptnVqKgTlvE~ 255 (358)
T COG1244 200 RNY--GAKVKTYLLLKPPFLSEKEAIEDVISSIV-AAKPGTDTISINPTNVQKGTLVEK 255 (358)
T ss_pred HHc--CCceeEEEEecccccChHHHHHHHHHHHH-HhccCCCeEEecccccchhhHHHH
Confidence 999 99999999999998776 34444444 333356899999999999996543
No 108
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.20 E-value=2e-09 Score=105.15 Aligned_cols=197 Identities=17% Similarity=0.233 Sum_probs=146.2
Q ss_pred EEEEeCCCCCCCccceeeCc--cCCC-ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhC
Q 013195 194 EILPINVGCLGACTYCKTKH--ARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (448)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~--~rg~-~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~ 270 (448)
--|.++.-|+++|.||.-.. ...+ ....++|+|..-++...+.|++.|.|+|+.... ..+|.++++.+.+.
T Consensus 13 LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPll-----R~dl~eIi~~l~~~- 86 (322)
T COG2896 13 LRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEPLL-----RKDLDEIIARLARL- 86 (322)
T ss_pred EEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCchh-----hcCHHHHHHHHhhc-
Confidence 34788999999999997543 1111 224579999999999999999999999954322 35788888888763
Q ss_pred CCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCE-EE
Q 013195 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IA 349 (448)
Q Consensus 271 ~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~-i~ 349 (448)
+...+++. +|...+.. .++-++.++ ..++++.+.|.+++..+.+.+....+++.+-|+.+.++ |+. +.
T Consensus 87 ---~~~~islT-TNG~~L~~----~a~~Lk~AG-l~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~--Gl~pVK 155 (322)
T COG2896 87 ---GIRDLSLT-TNGVLLAR----RAADLKEAG-LDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEA--GLTPVK 155 (322)
T ss_pred ---ccceEEEe-cchhhHHH----HHHHHHHcC-CcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHc--CCCceE
Confidence 34456664 46543333 333444555 58999999999999999998877799999999999999 764 44
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHHH
Q 013195 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409 (448)
Q Consensus 350 ~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~ 409 (448)
.+..+ ++|-+++++.+.++|++..+. .+.+--|+|.-....+.+. .++.++..++..+
T Consensus 156 lN~Vv-~kgvNd~ei~~l~e~~~~~~~-~lrfIE~m~~g~~~~~~~~~~~~~~~i~~~l~~ 214 (322)
T COG2896 156 LNTVL-MKGVNDDEIEDLLEFAKERGA-QLRFIELMPLGEGNSWRLDKYLSLDEILRKLEE 214 (322)
T ss_pred EEEEE-ecCCCHHHHHHHHHHHhhcCC-ceEEEEEeecCcccchhhhccccHHHHHHHHHh
Confidence 44333 366799999999999999997 6888899998776666665 5777766666444
No 109
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=99.19 E-value=1.2e-09 Score=99.27 Aligned_cols=203 Identities=16% Similarity=0.199 Sum_probs=144.7
Q ss_pred EeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcc
Q 013195 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST 276 (448)
Q Consensus 197 ~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~ 276 (448)
-+++=|..+|..|.-...++-. .-+-++++.+..++.++|+..+.+.|.-. +-|.=--..+.+.|+++.+...
T Consensus 16 VTG~yC~lnC~HCg~~~L~~Mi-~vt~~~l~k~~~el~kkGy~g~llSGGm~-srg~VPl~kf~d~lK~lke~~~----- 88 (275)
T COG1856 16 VTGAYCSLNCPHCGRHYLEHMI-KVTTKSLLKRCMELEKKGYEGCLLSGGMD-SRGKVPLWKFKDELKALKERTG----- 88 (275)
T ss_pred EeccceEecChHHHHHHHHHhc-ccchHHHHHHHHHHHhcCceeEEEeCCcC-CCCCccHHHHHHHHHHHHHhhC-----
Confidence 4677899999999877665532 23348899999999999999998887432 2221001356778888876532
Q ss_pred eEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhc-CCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEe
Q 013195 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM-NREYTLSDFRTVVDTLIELVPGMQIATDIICG 355 (448)
Q Consensus 277 ~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m-~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG 355 (448)
+.+. .+...+.+.. +.++.. .. ..-+++-+ -+++++++++ +-..++++|.+.+..+++. |+.+.-++++|
T Consensus 89 -l~in-aHvGfvdE~~--~eklk~-~~-vdvvsLDf-vgDn~vIk~vy~l~ksv~dyl~~l~~L~e~--~irvvpHitiG 159 (275)
T COG1856 89 -LLIN-AHVGFVDESD--LEKLKE-EL-VDVVSLDF-VGDNDVIKRVYKLPKSVEDYLRSLLLLKEN--GIRVVPHITIG 159 (275)
T ss_pred -eEEE-EEeeeccHHH--HHHHHH-hc-CcEEEEee-cCChHHHHHHHcCCccHHHHHHHHHHHHHc--CceeceeEEEE
Confidence 1121 2222233322 333332 22 23444444 3466777655 5567999999999999999 99999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHHHHHH
Q 013195 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415 (448)
Q Consensus 356 ~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~~ 415 (448)
+.+-....=.++++.+.+..+|.+-+..+.|.|||.+.+.+.+|.++..+-.+..++.+.
T Consensus 160 L~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~ 219 (275)
T COG1856 160 LDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFP 219 (275)
T ss_pred eccCcccchHHHHHHHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCC
Confidence 988777777789999999999999999999999999999988887777666666666654
No 110
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.19 E-value=2.7e-09 Score=98.17 Aligned_cols=164 Identities=20% Similarity=0.289 Sum_probs=113.3
Q ss_pred CcEEEEEeCCCCCCCccceeeCccCC--CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHH
Q 013195 191 KFVEILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (448)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~ 268 (448)
+..+++..++|||++|.||..+.... .....++++++++++.. ...++.|.|+|++...+ .++.++++.+.+
T Consensus 15 g~~~~~~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~~~i~~sGGEPll~-----~~l~~li~~~~~ 88 (191)
T TIGR02495 15 GKLAFTIFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSR-QGLIDGVVITGGEPTLQ-----AGLPDFLRKVRE 88 (191)
T ss_pred CCeEEEEEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHh-cCCCCeEEEECCcccCc-----HhHHHHHHHHHH
Confidence 44567889999999999998864322 24568899999998875 23467889988776554 247888888875
Q ss_pred hCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHH-HHHHHHHHHHHhCCCC-
Q 013195 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS-DFRTVVDTLIELVPGM- 346 (448)
Q Consensus 269 ~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e-~~~~~i~~ir~~~pgi- 346 (448)
. + ..+.+. ++.. ..+. +.++... +...++.+++++.++...+.++++.+.+ ++.+.++.+++. |+
T Consensus 89 ~----g-~~v~i~-TNg~-~~~~---l~~l~~~-g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~--gi~ 155 (191)
T TIGR02495 89 L----G-FEVKLD-TNGS-NPRV---LEELLEE-GLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRS--GIP 155 (191)
T ss_pred C----C-CeEEEE-eCCC-CHHH---HHHHHhc-CCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHc--CCC
Confidence 2 2 345554 3443 2222 4444443 3346789999986665667767665554 999999999998 75
Q ss_pred -EEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 013195 347 -QIATDIICGFPGETDEDFNQTVNLIKEYK 375 (448)
Q Consensus 347 -~i~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (448)
.+.+.++-|+.. ++++++.++++.+++
T Consensus 156 ~~i~~~v~~~~~~--~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 156 FELRTTVHRGFLD--EEDLAEIATRIKENG 183 (191)
T ss_pred EEEEEEEeCCCCC--HHHHHHHHHHhccCC
Confidence 455555556543 678999999999887
No 111
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.17 E-value=2.1e-09 Score=103.13 Aligned_cols=178 Identities=16% Similarity=0.162 Sum_probs=117.8
Q ss_pred EEEEEeCCCCCCCccceeeCccC--CCccccCHHHHHHHHHHHHH---CCCcEEEEEecCCCCCCCCCCCC-HHHHHHHH
Q 013195 193 VEILPINVGCLGACTYCKTKHAR--GHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVN-LPILLNAI 266 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~r--g~~rsr~~e~Iv~ei~~l~~---~G~~ei~~~~~~~~~yg~d~~~~-l~~ll~~l 266 (448)
...+....||+++|.||..+... ...+..++++++++++.... .....|.|+|++.... .+ +.++++.+
T Consensus 21 ~~~~~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGGEPll~-----~~~~~~l~~~~ 95 (246)
T PRK11145 21 IRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAILQ-----AEFVRDWFRAC 95 (246)
T ss_pred eEEEEEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCccHhcC-----HHHHHHHHHHH
Confidence 44677899999999999866432 22456799999999887643 2335688887655432 23 34677777
Q ss_pred HHhCCCCCcceEEEeecCCcC--hhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q 013195 267 VAELPPDGSTMLRIGMTNPPF--ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344 (448)
Q Consensus 267 ~~~~~~~~~~~iri~~~~p~~--i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~p 344 (448)
.+. +. .+.+. ++... ..+. +.+++.. +..+.+++.+.+++..+.+... +.+...+.++.+.+.
T Consensus 96 k~~----g~-~i~l~-TNG~~~~~~~~---~~~ll~~---~d~v~islk~~~~e~~~~~~g~-~~~~~l~~i~~l~~~-- 160 (246)
T PRK11145 96 KKE----GI-HTCLD-TNGFVRRYDPV---IDELLDV---TDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFARYLAKR-- 160 (246)
T ss_pred HHc----CC-CEEEE-CCCCCCcchHH---HHHHHHh---CCEEEECCCcCChhhcccccCC-ChHHHHHHHHHHHhC--
Confidence 642 22 34443 33321 1233 3333321 3567899999999988777543 557788888888888
Q ss_pred CCEEE--EEEEEeCCCCCHHHHHHHHHHHHhcC-CCeEEEEeceeCCCCc
Q 013195 345 GMQIA--TDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGTP 391 (448)
Q Consensus 345 gi~i~--~~~IvG~PgET~ed~~~tl~~i~~l~-~~~v~i~~~~p~pGT~ 391 (448)
|+.+. +-+|-|+ .++++++++.++|+++++ +..+++.+|.|.++.+
T Consensus 161 g~~v~i~~~li~g~-nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~ 209 (246)
T PRK11145 161 NQKTWIRYVVVPGW-TDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKHK 209 (246)
T ss_pred CCcEEEEEEEECCC-CCCHHHHHHHHHHHHhcCCcceEEEecCCccchhH
Confidence 65444 4444444 456679999999999985 5678888888887653
No 112
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.17 E-value=8.1e-09 Score=102.86 Aligned_cols=185 Identities=15% Similarity=0.163 Sum_probs=128.7
Q ss_pred CCcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHC---CCcEEEEEecCCCCCCCCCC--CCHHHHHH
Q 013195 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIG--VNLPILLN 264 (448)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~---G~~ei~~~~~~~~~yg~d~~--~~l~~ll~ 264 (448)
.+.+..|.++.||+.+|.||..... |-.|..++++|++++....+. .++.|+|+|. |...- ..+..+++
T Consensus 95 ~~~t~cvSsq~GC~l~C~fC~tg~~-g~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGm-----GEPllN~d~v~~~i~ 168 (336)
T PRK14470 95 THHVVCLSSQAGCALGCAFCATGKL-GLDRSLRSWEIVAQLLAVRADSERPITGVVFMGQ-----GEPFLNYDEVLRAAY 168 (336)
T ss_pred CCCEEEEeCCCCcCCCCccccCCCC-CCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEec-----CccccCHHHHHHHHH
Confidence 3567899999999999999998653 445677899999999876542 5789999982 33221 12445555
Q ss_pred HHHHhCCC-CCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhc---CCCCCHHHHHHHHHHHH
Q 013195 265 AIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLI 340 (448)
Q Consensus 265 ~l~~~~~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m---~R~~t~e~~~~~i~~ir 340 (448)
.+...... .....+.+++ +.. ... +.+++..+. -..|.+.+.+.+++..+.+ +++++.+++.+.++.+.
T Consensus 169 ~l~~~~~~~~~~~~ItVsT-nG~--~p~---i~~l~~~~~-~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~ 241 (336)
T PRK14470 169 ALCDPAGARIDGRRISIST-AGV--VPM---IRRYTAEGH-KFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHA 241 (336)
T ss_pred HHhCccccccCCCceEEEe-cCC--hHH---HHHHHhcCC-CceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHH
Confidence 55421000 0134666653 321 222 334444332 2469999999999999877 45689999999999998
Q ss_pred HhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCC
Q 013195 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389 (448)
Q Consensus 341 ~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pG 389 (448)
+.-..+.+..-+|-|+ .++++++++..++++.+.. +++.-+|.|.+|
T Consensus 242 ~~~rri~ieyvLI~Gv-NDseeda~~La~llk~l~~-~vnlI~~N~~~~ 288 (336)
T PRK14470 242 ALRGRVTLEYVMISGV-NVGEEDAAALGRLLAGIPV-RLNPIAVNDATG 288 (336)
T ss_pred HhCCCeEEEEEEEecc-cCCHHHHHHHHHHHhcCCC-eEEEeccCCCCC
Confidence 8722356777777787 6889999999999998854 788888888655
No 113
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.17 E-value=5.3e-09 Score=104.60 Aligned_cols=191 Identities=18% Similarity=0.294 Sum_probs=124.8
Q ss_pred CCcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHH----CCCcEEEEEecCCCCCCCCCC--CCHHHHH
Q 013195 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIG--VNLPILL 263 (448)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~----~G~~ei~~~~~~~~~yg~d~~--~~l~~ll 263 (448)
...+.+|.++.||+.+|.||..+. .|..|..+.++|++++..+.. .++..|+|.| .|...- ..+.+++
T Consensus 97 ~~~t~cvSsq~GC~l~C~FC~t~~-~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmG-----mGEPL~N~d~v~~~l 170 (348)
T PRK14467 97 DHLTLCVSSQVGCAVGCKFCATAK-DGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMG-----MGEPLANYENVRKAV 170 (348)
T ss_pred CCcEEEEEcCCCCCCcCcCCCCCC-CCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEc-----cChhhcCHHHHHHHH
Confidence 356789999999999999999874 355688999999999976654 3578899988 233221 2344555
Q ss_pred HHHHHhCCC-CCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcC---CCCCHHHHHHHHHHH
Q 013195 264 NAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTL 339 (448)
Q Consensus 264 ~~l~~~~~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~---R~~t~e~~~~~i~~i 339 (448)
+.+...... -....+++++.- +...+.++....-.+. + .+.+.+-+.+++..+.+. +.++.+++.++++..
T Consensus 171 ~~l~~~~gl~~~~r~itvsT~G---~~~~i~~l~~~~~l~~-v-~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~ 245 (348)
T PRK14467 171 QIMTSPWGLDLSKRRITISTSG---IIHQIKRMAEDPVMPE-V-NLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQY 245 (348)
T ss_pred HHHcChhccCcCCCcEEEECCC---ChhHHHHHHhhccccC-e-eEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHH
Confidence 555321100 001256676432 1122222211000022 2 456899999999997664 347888888887755
Q ss_pred HH-hCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC-CCeEEEEeceeCCCCcc
Q 013195 340 IE-LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGTPA 392 (448)
Q Consensus 340 r~-~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~-~~~v~i~~~~p~pGT~~ 392 (448)
.. .-..+.+..-+|=|+ .++++++++..+|++.++ ..++++-+|.|+|+.+.
T Consensus 246 ~~~~g~~V~ieyvLIpGv-NDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~ 299 (348)
T PRK14467 246 PLPPGRRIMLEYVLIKGV-NDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPY 299 (348)
T ss_pred HHhcCCeEEEEEEEECCc-cCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCC
Confidence 53 322356666666665 688999999999999984 56799999999888754
No 114
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.16 E-value=8.3e-09 Score=103.14 Aligned_cols=192 Identities=15% Similarity=0.252 Sum_probs=127.7
Q ss_pred CCcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHH---CCCcEEEEEe-cCCCCCCCCCCCCHHHHHHH
Q 013195 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---DGVKEVWLSS-EDTGAYGRDIGVNLPILLNA 265 (448)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~---~G~~ei~~~~-~~~~~yg~d~~~~l~~ll~~ 265 (448)
...+.+|.++-||+.+|.||..+.. |..|..++++|++++..+.+ .++..|+|.| +..... . ..+.+.++.
T Consensus 99 ~r~t~cvSsqvGC~~~C~FC~tg~~-g~~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGmGEPlln-~---~~v~~~i~~ 173 (345)
T PRK14457 99 KRLTVCVSSQVGCPMACDFCATGKG-GLKRSLKAHEIVDQVLTVQEDMQRRVSHVVFMGMGEPLLN-I---DEVLAAIRC 173 (345)
T ss_pred CCCEEEEeCCCCCCCcCCcCCCCCC-CCccccCHHHHHHHHHHHHHHhcCCCCEEEEEecCccccC-H---HHHHHHHHH
Confidence 4567899999999999999987642 55677899999999987654 2578899988 322221 0 123444444
Q ss_pred HHHhCCCCCcceEEEeecCCcChhHHHHHHHHHH-hC-CCcccccccccCCCCHHHHHhc---CCCCCHHHHHHHHHH-H
Q 013195 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RH-PCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDT-L 339 (448)
Q Consensus 266 l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~-~~-~~~~~~l~iglES~s~~vLk~m---~R~~t~e~~~~~i~~-i 339 (448)
+...+. -+...+++++.- +.+.++++.... .. ++.-..+.+.+-+.+++..+.+ +++|..+++.+.+.. +
T Consensus 174 l~~~~~-i~~r~itvST~G---~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~ 249 (345)
T PRK14457 174 LNQDLG-IGQRRITVSTVG---VPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYV 249 (345)
T ss_pred HhcccC-CccCceEEECCC---chhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHH
Confidence 433211 012366676432 122222233211 00 0011256788999999999877 456888888877755 4
Q ss_pred HHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 013195 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (448)
Q Consensus 340 r~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~ 392 (448)
.+.-..+.+..-+|=|+ .++++++++..+|++.++. ++++-+|.|.++.+.
T Consensus 250 ~~~gr~I~iey~LIpGv-NDs~e~a~~La~~l~~l~~-~VnLIPynp~~~~~~ 300 (345)
T PRK14457 250 AITGRRVSFEYILLGGV-NDLPEHAEELANLLRGFQS-HVNLIPYNPIDEVEF 300 (345)
T ss_pred HHhCCEEEEEEEEECCc-CCCHHHHHHHHHHHhcCCC-eEEEecCCCCCCCCC
Confidence 44422377888888887 7999999999999999975 799999999888644
No 115
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.15 E-value=7.1e-09 Score=104.11 Aligned_cols=189 Identities=15% Similarity=0.248 Sum_probs=126.6
Q ss_pred CCcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHH---C------C--CcEEEEEecCCCCCCCCCC--
Q 013195 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---D------G--VKEVWLSSEDTGAYGRDIG-- 256 (448)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~---~------G--~~ei~~~~~~~~~yg~d~~-- 256 (448)
...+..|.++.||+.+|.||..+. .|-.|..++++|++++..+.+ . | ++.|+|.|. |....
T Consensus 119 ~~~tlCvSsQvGC~m~C~FCatg~-~g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGm-----GEPLlN~ 192 (373)
T PRK14459 119 DRATLCISSQAGCGMACPFCATGQ-GGLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGM-----GEPLANY 192 (373)
T ss_pred CCceEEEEecCCCCCcCCCCCCCC-CCCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecC-----CcchhhH
Confidence 356789999999999999999764 355788999999999987653 1 1 677999872 32220
Q ss_pred CCHHHHHHHHHHhCCC-CCc--ceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhc---CCCCCHH
Q 013195 257 VNLPILLNAIVAELPP-DGS--TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLS 330 (448)
Q Consensus 257 ~~l~~ll~~l~~~~~~-~~~--~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m---~R~~t~e 330 (448)
..+.+.++.+.+..+. .+. ..+++++.- +... +.++.+.. +-..|.+.+-|.+++..+.+ +|.|+.+
T Consensus 193 d~V~~~i~~l~~~~~~g~gis~r~ITvST~G---l~~~---i~~la~~~-l~~~LavSLha~d~e~R~~l~p~n~~~~l~ 265 (373)
T PRK14459 193 KRVVAAVRRITAPAPEGLGISARNVTVSTVG---LVPA---IRKLADEG-LPVTLAVSLHAPDDELRDELVPVNTRWKVD 265 (373)
T ss_pred HHHHHHHHHHhCcccccCCccCCEEEEECcC---chhH---HHHHHHhc-CCeEEEEEeCCCCHHHHHHhcCcccCCCHH
Confidence 2344555555431010 012 255565431 2222 22333322 11258899999999999655 3579999
Q ss_pred HHHHHHHHHH-HhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEeceeCCCCcc
Q 013195 331 DFRTVVDTLI-ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK--FPQVHISQFYPRPGTPA 392 (448)
Q Consensus 331 ~~~~~i~~ir-~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~--~~~v~i~~~~p~pGT~~ 392 (448)
++.+++.... +.--.+.+..-+|=|+ .+++++..+..++++.++ .-++++-+|.|.+|.+.
T Consensus 266 ~ll~a~~~~~~~~grrv~ieyvLi~Gv-NDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y 329 (373)
T PRK14459 266 EVLDAARYYADATGRRVSIEYALIRDI-NDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKW 329 (373)
T ss_pred HHHHHHHHHHHHhCCEEEEEEEEeCCC-CCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCC
Confidence 9999876665 4411245666666666 799999999999999984 45899999999988753
No 116
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=99.15 E-value=5.6e-09 Score=104.48 Aligned_cols=184 Identities=15% Similarity=0.216 Sum_probs=127.0
Q ss_pred cEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCC--CcEEEEEe-cCCCCCCCCCCCCHHHHHHHHHH
Q 013195 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG--VKEVWLSS-EDTGAYGRDIGVNLPILLNAIVA 268 (448)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G--~~ei~~~~-~~~~~yg~d~~~~l~~ll~~l~~ 268 (448)
.+..|.++.||+.+|.||..+. -|..|..+.++|++++..+...| +..|+|+| +....+ .++.+.++.+..
T Consensus 100 ~t~CvssqvGC~~~C~FC~tg~-~g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEPLln-----~~v~~~i~~l~~ 173 (347)
T PRK14453 100 ESFCISSQCGCGFGCRFCATGS-IGLKRNLTADEITDQLLYFYLNGHRLDSISFMGMGEALAN-----PELFDALKILTD 173 (347)
T ss_pred eeEEEecCCCcCCCCCCCCCCC-CCCcccCCHHHHHHHHHHHHhcCCCcceEEEeecCCccCC-----HHHHHHHHHHhc
Confidence 5789999999999999999885 36678899999999998776554 88899998 444333 134555554443
Q ss_pred hCCCC--CcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhc---CCCCCHHHHHHHHHHHHH-h
Q 013195 269 ELPPD--GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLIE-L 342 (448)
Q Consensus 269 ~~~~~--~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m---~R~~t~e~~~~~i~~ir~-~ 342 (448)
. ... +...+.+++.-. ...++.+.+.+.. ..+.+.+-|.+++..+.+ ++.+..+++.++++.... .
T Consensus 174 ~-~~~~~~~r~itVsT~G~---~~~i~~l~~~~~~----v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~ 245 (347)
T PRK14453 174 P-NLFGLSQRRITISTIGI---IPGIQRLTQEFPQ----VNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHT 245 (347)
T ss_pred c-cccCCCCCcEEEECCCC---chhHHHHHhhccC----cCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhc
Confidence 1 101 123466654321 1122334433321 245568889999888554 456788888776666554 3
Q ss_pred CCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC----CCeEEEEeceeCCCC
Q 013195 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYK----FPQVHISQFYPRPGT 390 (448)
Q Consensus 343 ~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~----~~~v~i~~~~p~pGT 390 (448)
-..+.+..-+|=|+ .++++++++.++|++.++ ...+++-+|.|.++.
T Consensus 246 ~~~V~iry~LI~Gv-NDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~ 296 (347)
T PRK14453 246 GRKVYIAYIMLEGV-NDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKT 296 (347)
T ss_pred CCcEEEEEEeECCC-CCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCC
Confidence 22478888888887 789999999999999884 568999999998874
No 117
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.15 E-value=7.5e-09 Score=102.95 Aligned_cols=200 Identities=17% Similarity=0.159 Sum_probs=135.3
Q ss_pred CcEEEEEeCCCCCCCccceeeCccCC-C-ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHH
Q 013195 191 KFVEILPINVGCLGACTYCKTKHARG-H-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (448)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg-~-~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~ 268 (448)
+....++++.+|+.+|.||....... . .+..+++++++.++ +.|+..|.|+|++...+ .++.++++.+.+
T Consensus 27 Pl~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i~---e~g~~~V~i~GGEPLL~-----pdl~eiv~~~~~ 98 (318)
T TIGR03470 27 PLVLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAVD---ECGAPVVSIPGGEPLLH-----PEIDEIVRGLVA 98 (318)
T ss_pred CCEEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHHH---HcCCCEEEEeCcccccc-----ccHHHHHHHHHH
Confidence 45678999999999999997543221 1 23467888877654 45889999998776654 357888888865
Q ss_pred hCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhc-CCCCCHHHHHHHHHHHHHhCCCCE
Q 013195 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM-NREYTLSDFRTVVDTLIELVPGMQ 347 (448)
Q Consensus 269 ~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m-~R~~t~e~~~~~i~~ir~~~pgi~ 347 (448)
. + ..+.+. +|...+.+. +..+...+. ..+.+.+.+.. +.-..+ +++.+.+...+.++.++++ |+.
T Consensus 99 ~----g-~~v~l~-TNG~ll~~~---~~~l~~~~~--~~i~VSLDG~~-e~hd~~~~~~g~f~~~l~~I~~l~~~--G~~ 164 (318)
T TIGR03470 99 R----K-KFVYLC-TNALLLEKK---LDKFEPSPY--LTFSVHLDGLR-EHHDASVCREGVFDRAVEAIREAKAR--GFR 164 (318)
T ss_pred c----C-CeEEEe-cCceehHHH---HHHHHhCCC--cEEEEEEecCc-hhhchhhcCCCcHHHHHHHHHHHHHC--CCc
Confidence 3 2 344443 566555543 334444432 36778888754 444333 5567899999999999999 877
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHHHHH
Q 013195 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414 (448)
Q Consensus 348 i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~ 414 (448)
+...+.+ +++++.+++.+.++++.+++++.+.+.+..|+..++-... .+..++.++.++++.++.
T Consensus 165 v~v~~tv-~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~~~~~-~l~~~e~~~~~~~~~~~~ 229 (318)
T TIGR03470 165 VTTNTTL-FNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYEKAPDQDH-FLGRRQTKKLFREVLSNG 229 (318)
T ss_pred EEEEEEE-eCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccccc-ccCHHHHHHHHHHHHhhc
Confidence 6665543 3678999999999999999999998887777654442111 244555555555554443
No 118
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.14 E-value=1.2e-08 Score=102.87 Aligned_cols=187 Identities=15% Similarity=0.303 Sum_probs=126.6
Q ss_pred CCcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHC----------CCcEEEEEecCCCCCCCCCC--C
Q 013195 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD----------GVKEVWLSSEDTGAYGRDIG--V 257 (448)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~----------G~~ei~~~~~~~~~yg~d~~--~ 257 (448)
...+..|.++-||+.+|.||..+. .|-.|..++++|++++..+... +++.|+|+|. |...- .
T Consensus 101 ~~~t~CvSsQvGC~~~C~FC~t~~-~g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGm-----GEPL~N~d 174 (372)
T PRK11194 101 DRATLCVSSQVGCALECKFCSTAQ-QGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGM-----GEPLLNLN 174 (372)
T ss_pred CCeeEEEecCCCCCCcCCCCCCCC-CCCCCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecC-----CccccCHH
Confidence 356788999999999999999874 3556788999999998665431 2778888872 33321 1
Q ss_pred CHHHHHHHHHHhCCC-CCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhc---CCCCCHHHHH
Q 013195 258 NLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFR 333 (448)
Q Consensus 258 ~l~~ll~~l~~~~~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m---~R~~t~e~~~ 333 (448)
.+.+.++.+.+.... .....+++++.- +.+. +.+++.... -.+.+.+-+.+++..+.+ ++.+..+++.
T Consensus 175 ~v~~al~~l~~~~g~~i~~r~itVsTsG---~~~~---i~~l~~~~d--~~LaiSLha~d~e~R~~lmPin~~~~l~~ll 246 (372)
T PRK11194 175 NVVPAMEIMLDDFGFGLSKRRVTLSTSG---VVPA---LDKLGDMID--VALAISLHAPNDELRDEIVPINKKYNIETFL 246 (372)
T ss_pred HHHHHHHHHhhhhccCcCCCeEEEECCC---CchH---HHHHHhccC--eEEEeeccCCCHHHHHHhcCCcccccHHHHH
Confidence 233445544432110 012367776432 2222 333443322 256667888899998655 3567888887
Q ss_pred HHHHHHHHhC----CCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 013195 334 TVVDTLIELV----PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (448)
Q Consensus 334 ~~i~~ir~~~----pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~ 392 (448)
+++....+.- ..+.+..-+|=|+ .++++++++..+|++.++. ++++-+|.|++|.+.
T Consensus 247 ~a~~~y~~~~~~~~rrI~irypLIpGv-NDs~e~a~~La~ll~~l~~-~VnLIPYN~~~~~~~ 307 (372)
T PRK11194 247 AAVRRYLEKSNANQGRVTVEYVMLDHV-NDGTEHAHQLAELLKDTPC-KINLIPWNPFPGAPY 307 (372)
T ss_pred HHHHHHHHhcccCCCeEEEEEEeECCC-CCCHHHHHHHHHHHhcCCc-eEEEecCCCCCCCCC
Confidence 7766655442 2478888888888 8999999999999999874 899999999998654
No 119
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.14 E-value=1.3e-08 Score=102.20 Aligned_cols=186 Identities=16% Similarity=0.275 Sum_probs=122.8
Q ss_pred CcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHH---HHH-C--C---CcEEEEEecCCCCCCCCCC--CCH
Q 013195 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT---VIA-D--G---VKEVWLSSEDTGAYGRDIG--VNL 259 (448)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~---l~~-~--G---~~ei~~~~~~~~~yg~d~~--~~l 259 (448)
.....+..+.||+.+|.||..+. .|..|..++++|++++.. ... . | ++.|+|+|. |...- ..+
T Consensus 101 r~t~CvSsq~GC~~~C~FC~tg~-~g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGm-----GEPLln~~~v 174 (354)
T PRK14460 101 RYTQCLSCQVGCAMGCTFCSTGT-MGFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGM-----GEPLLNLDEV 174 (354)
T ss_pred ceeEEeeCCCCcCCCCccCCCCC-CCCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecC-----CcccCCHHHH
Confidence 45678999999999999998664 245678899999999943 332 2 3 678888872 33221 123
Q ss_pred HHHHHHHHHhCCC-CCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCC---CCCHHHHHHH
Q 013195 260 PILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR---EYTLSDFRTV 335 (448)
Q Consensus 260 ~~ll~~l~~~~~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R---~~t~e~~~~~ 335 (448)
.+.++.+.+.... -+...+.+++ +.. .+. +.++... +. ..+.+.+.|.+++..+.+.+ .++.+++.++
T Consensus 175 ~~~l~~l~~~~Gl~~~~r~itvsT-~G~--~~~---i~~L~~~-~l-~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~a 246 (354)
T PRK14460 175 MRSLRTLNNEKGLNFSPRRITVST-CGI--EKG---LRELGES-GL-AFLAVSLHAPNQELRERIMPKAARWPLDDLIAA 246 (354)
T ss_pred HHHHHHHhhhhccCCCCCeEEEEC-CCC--hHH---HHHHHhC-CC-cEEEEeCCCCCHHHHHHhcCccccCCHHHHHHH
Confidence 4444444321100 0012466653 321 222 3333333 33 57889999999999977744 4788888887
Q ss_pred HHHHHH-hCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 013195 336 VDTLIE-LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (448)
Q Consensus 336 i~~ir~-~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~ 392 (448)
+..... .-..+.+..-+|=| ..++++++++.++|++.++. .+++-+|.|.+|.+.
T Consensus 247 l~~~~~~~~~~v~iey~LI~G-vNDs~ed~~~l~~~l~~~~~-~VnLIpyn~~~g~~y 302 (354)
T PRK14460 247 LKSYPLKTRERVTFEYLLLGG-VNDSLEHARELVRLLSRTKC-KLNLIVYNPAEGLPY 302 (354)
T ss_pred HHHHHHhcCCeEEEEEEEECC-CCCCHHHHHHHHHHHhcCCC-cEEEEcCCCCCCCCC
Confidence 775433 31125555555555 48999999999999999975 799999999999874
No 120
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.12 E-value=1.5e-08 Score=100.84 Aligned_cols=188 Identities=18% Similarity=0.316 Sum_probs=133.2
Q ss_pred CcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHH-----------------CCCcEEEEEecCCCCCCC
Q 013195 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-----------------DGVKEVWLSSEDTGAYGR 253 (448)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~-----------------~G~~ei~~~~~~~~~yg~ 253 (448)
..+..|.++-||+.+|+||.+.. -|-.|..++.+|++++..+.+ ..++.|+|.|. |.
T Consensus 106 r~TlCvSSQvGC~mgC~FCaTG~-~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGM-----GE 179 (371)
T PRK14461 106 RATVCVSTQAGCGMGCVFCATGT-LGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGM-----GE 179 (371)
T ss_pred CceEEEEccCCccCCCCcccCCC-CCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEcc-----CC
Confidence 56789999999999999998654 366899999999999977643 12678888873 44
Q ss_pred CCCCCHHHHHHHHHHhCCCC----CcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhc---CCC
Q 013195 254 DIGVNLPILLNAIVAELPPD----GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NRE 326 (448)
Q Consensus 254 d~~~~l~~ll~~l~~~~~~~----~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m---~R~ 326 (448)
.. .++..+++++.-..... +...+.+++.- +.+. +.++.+.. .-..+.+.+-+.++++.+.+ ||.
T Consensus 180 PL-~NydnV~~ai~il~d~~g~~is~R~ITVST~G---ivp~---I~~la~~~-~~v~LAiSLHA~~~e~R~~lmPin~~ 251 (371)
T PRK14461 180 PF-ANYDRWWQAVERLHDPQGFNLGARSMTVSTVG---LVKG---IRRLANER-LPINLAISLHAPDDALRSELMPVNRR 251 (371)
T ss_pred ch-hhHHHHHHHHHHhcCccccCcCCCceEEEeec---chhH---HHHHHhcc-cCceEEEEeCCCCHHHHHHhcCcccC
Confidence 33 34566776665422211 12356666442 2233 34444432 12378889999999999554 688
Q ss_pred CCHHHHHHHHHHHHHhC-CCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC-----CCeEEEEeceeCCCCccc
Q 013195 327 YTLSDFRTVVDTLIELV-PGMQIATDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGTPAA 393 (448)
Q Consensus 327 ~t~e~~~~~i~~ir~~~-pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~-----~~~v~i~~~~p~pGT~~~ 393 (448)
|..+++.++++...+.- ..+.+..-+|=|. .+++++..+..++++.++ .-+|++-+|-|.||+++.
T Consensus 252 ypl~eLl~a~~~y~~~t~rrit~EYvLi~gv-NDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~ 323 (371)
T PRK14461 252 YPIADLMAATRDYIAKTRRRVSFEYVLLQGK-NDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLG 323 (371)
T ss_pred CCHHHHHHHHHHHHHhhCCEEEEEEEEECCC-CCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCC
Confidence 99999999888876541 1266666667676 899999999999999883 358999999999999754
No 121
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.10 E-value=3.4e-08 Score=98.95 Aligned_cols=184 Identities=16% Similarity=0.302 Sum_probs=123.8
Q ss_pred CcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHC-C-----CcEEEEEecCCCCCCCCCCCCHHHHHH
Q 013195 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-G-----VKEVWLSSEDTGAYGRDIGVNLPILLN 264 (448)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~-G-----~~ei~~~~~~~~~yg~d~~~~l~~ll~ 264 (448)
....+|.++.||+.+|.||..... |..|..++++|++++..+... | ++.|+|.| .|... .++..+++
T Consensus 92 ~~t~cvSsq~GC~l~C~fC~tg~~-g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~G-----mGEPl-ln~~~v~~ 164 (343)
T PRK14468 92 RKTICVSTMVGCPAGCAFCATGAM-GFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMG-----MGEPL-LNYENVLK 164 (343)
T ss_pred CCEEEEEecCCCCCcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEec-----cCccc-cCHHHHHH
Confidence 466799999999999999987542 557888999999999766543 2 56788887 23322 13345555
Q ss_pred HHHHhCCCCCc----ceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhc---CCCCCHHHHHHHHH
Q 013195 265 AIVAELPPDGS----TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVD 337 (448)
Q Consensus 265 ~l~~~~~~~~~----~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m---~R~~t~e~~~~~i~ 337 (448)
.+.......+. ..+++++ +. +.+. +.++.... +-..+.+.+-+.+++..+.+ +++++.+++.+.++
T Consensus 165 ~i~~l~~~~g~~l~~r~itvST-~G--~~~~---i~~L~~~~-l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~ 237 (343)
T PRK14468 165 AARIMLHPQALAMSPRRVTLST-VG--IPKG---IRRLAEED-LGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVR 237 (343)
T ss_pred HHHHhcccccccccCceEEEEC-CC--ChHH---HHHHHHhC-cCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHH
Confidence 55432110011 2455653 22 2222 23333322 11258899999999999777 46789999999998
Q ss_pred HHHHhC-CCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCC
Q 013195 338 TLIELV-PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390 (448)
Q Consensus 338 ~ir~~~-pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT 390 (448)
...+.. ..+.+..-+|=|+ .++++++.+..++++.+. .++++-+|.|.++.
T Consensus 238 ~~~~~~~~~V~ieyvLI~Gv-NDs~e~~~~L~~ll~~~~-~~VnLIPynp~~~~ 289 (343)
T PRK14468 238 HYQAVTGRRVTLEYTMLKGV-NDHLWQAELLADLLRGLV-SHVNLIPFNPWEGS 289 (343)
T ss_pred HHHHhcCCeEEEEEEEeCCC-cCCHHHHHHHHHHHhcCC-cEEEEEcCCCCCCC
Confidence 655542 2256666666666 799999999999999986 47888899987763
No 122
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=99.10 E-value=2.3e-08 Score=100.65 Aligned_cols=189 Identities=15% Similarity=0.255 Sum_probs=124.4
Q ss_pred CCcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHH------CCCcEEEEEe-cCCCCCCCCCCCCHHHH
Q 013195 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA------DGVKEVWLSS-EDTGAYGRDIGVNLPIL 262 (448)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~------~G~~ei~~~~-~~~~~yg~d~~~~l~~l 262 (448)
...+..|..+.||+.+|+||..+.. |..|..++++|++++..+.. .++..|+|.| +..... ...+.++
T Consensus 103 ~~~t~cVSsQ~GC~l~C~fC~t~~~-g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGmGEPLln----~d~v~~~ 177 (355)
T TIGR00048 103 DRATVCVSSQVGCALGCTFCATAKG-GFNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGMGEPLLN----LNEVVKA 177 (355)
T ss_pred CCcEEEEecCCCCCCcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecCCchhhC----HHHHHHH
Confidence 3567889999999999999997642 45678899999999876532 2467788887 222211 0123444
Q ss_pred HHHHHHhCCC-CCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhc---CCCCCHHHHHHHHHH
Q 013195 263 LNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDT 338 (448)
Q Consensus 263 l~~l~~~~~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m---~R~~t~e~~~~~i~~ 338 (448)
++.+.+.... -+...+.+++ +. +.+. +.+++... .-..+.+.+-+.+++..+.+ +|.++.+++.+.+..
T Consensus 178 l~~l~~~~g~~i~~~~itisT-~G--~~~~---i~~l~~~~-l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~ 250 (355)
T TIGR00048 178 MEIMNDDFGLGISKRRITIST-SG--VVPK---IDILADKM-LQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRR 250 (355)
T ss_pred HHHhhcccccCcCCCeEEEEC-CC--chHH---HHHHHHhC-CCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 5444322100 0113566653 22 1232 33444322 11156789999999999765 577889999988875
Q ss_pred H-HHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 013195 339 L-IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (448)
Q Consensus 339 i-r~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~ 392 (448)
. ++.-..+.+..-+|=|+ .++++++.+..++++.++. ++++-+|.|.++..+
T Consensus 251 ~~~~~g~~VtieyvLI~Gv-NDs~e~a~~La~llk~l~~-~VnLIPynp~~~~~~ 303 (355)
T TIGR00048 251 YLNKTGRRVTFEYVLLDGV-NDQVEHAEELAELLKGTKC-KVNLIPWNPFPEADY 303 (355)
T ss_pred HHHHhCCEEEEEEEEECCC-CCCHHHHHHHHHHHhcCCC-ceEEEecccCCCCCC
Confidence 4 44411256666666676 6888999999999999874 788889999887654
No 123
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.08 E-value=1.2e-08 Score=102.53 Aligned_cols=185 Identities=18% Similarity=0.249 Sum_probs=123.1
Q ss_pred CcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHH---CCCcEEEEEe-cCCCCCCCCCCCCHHHHHHHH
Q 013195 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---DGVKEVWLSS-EDTGAYGRDIGVNLPILLNAI 266 (448)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~---~G~~ei~~~~-~~~~~yg~d~~~~l~~ll~~l 266 (448)
..+..|.++.||+.+|.||..+. .|..|..++++|++++..+.. .++..|+|.| +..... ...+.++++.+
T Consensus 100 ~~t~cissq~GC~l~C~fC~tg~-~g~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~GmGEPLln----~d~v~~~i~~l 174 (343)
T PRK14469 100 RITACISTQVGCPVKCIFCATGQ-SGFVRNLTTGEIVSQILAMEKEEKKKVGNVVYMGMGEPLLN----YENVIKSIKIL 174 (343)
T ss_pred CeEEEEEecCCCCCcCcCCCCCC-CCccccCCHHHHHHHHHHHHHhccCCcCeEEEEccChhhhh----HHHHHHHHHHH
Confidence 46678999999999999998654 244577889999999865432 3678899988 322221 01244555555
Q ss_pred HHhC-CCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhc---CCCCCHHHHHHHHHHHHHh
Q 013195 267 VAEL-PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLIEL 342 (448)
Q Consensus 267 ~~~~-~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m---~R~~t~e~~~~~i~~ir~~ 342 (448)
...- ...+...+.++ ++. +.+. +.++.+. ++-..+.+.+.+.+++..+.+ +++++.+++.+.++.+.+.
T Consensus 175 ~~~~~~~~g~~~itis-TnG--~~~~---i~~L~~~-~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~ 247 (343)
T PRK14469 175 NHKKMKNIGIRRITIS-TVG--IPEK---IIQLAEE-GLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKK 247 (343)
T ss_pred hchhcccCCCCeEEEE-CCC--ChHH---HHHHHhh-CCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHH
Confidence 3210 00022356664 333 1233 3344433 222268999999999987653 6789999999988876654
Q ss_pred -CCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCC
Q 013195 343 -VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389 (448)
Q Consensus 343 -~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pG 389 (448)
...+.+..-+|-|+ .++++++++..++++.++. ++++-+|.|.++
T Consensus 248 ~~~~v~i~yvlI~g~-NDs~ed~~~La~llk~~~~-~VnLIpynp~~~ 293 (343)
T PRK14469 248 TGNRVTIEYILIKGF-NDEIEDAKKLAELLKGLKV-FVNLIPVNPTVP 293 (343)
T ss_pred hCCeEEEEEEEECCC-CCCHHHHHHHHHHHhccCc-EEEEEecCCCCc
Confidence 22345555556564 6889999999999999864 688889988766
No 124
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.07 E-value=1.8e-08 Score=100.19 Aligned_cols=185 Identities=17% Similarity=0.230 Sum_probs=127.0
Q ss_pred cEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHC-CCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhC
Q 013195 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (448)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~-G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~ 270 (448)
.+.+|.++-||+.+|.||.... .|-.|..++++|++++..+.+. .+.+|+|.|. |... .++.++++.+....
T Consensus 96 ~t~CvSsQvGC~~~C~FC~tg~-~g~~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGm-----GEPl-~N~d~vl~ai~~l~ 168 (344)
T PRK14464 96 DGLCVSTQVGCAVGCVFCMTGR-SGLLRQLGSAEIVAQVVLARRRRAVKKVVFMGM-----GEPA-HNLDNVLEAIDLLG 168 (344)
T ss_pred CcEEEEccCCcCCCCCcCcCCC-CCCCCCCCHHHHHHHHHHHHhcCCCCEEEEecc-----Cccc-CCHHHHHHHHHHhh
Confidence 3679999999999999998653 2557788999999999887764 6899999982 3332 23455555543211
Q ss_pred C--CCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcC---CCCCHHHHHHHHHHHHHhCCC
Q 013195 271 P--PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIELVPG 345 (448)
Q Consensus 271 ~--~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~---R~~t~e~~~~~i~~ir~~~pg 345 (448)
. .-+...+.++++-. .+...++.. . .+-..+.+.+.+.+++..+.+. +.|+.+++.+++....+.. |
T Consensus 169 ~~~~i~~r~itiST~G~---~~~i~rL~~---~-~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~-g 240 (344)
T PRK14464 169 TEGGIGHKNLVFSTVGD---PRVFERLPQ---Q-RVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARAT-G 240 (344)
T ss_pred chhcCCCceEEEecccC---chHHHHHHH---h-cCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHH-C
Confidence 0 00234555554321 122222222 1 2223667889999999986664 5689999999888877653 5
Q ss_pred --CEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccc
Q 013195 346 --MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393 (448)
Q Consensus 346 --i~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~ 393 (448)
+.+..-+|=|. .++.++..+..++++.+.. ++++-+|-|.+|++..
T Consensus 241 rri~~EyvLl~GV-NDs~e~a~~L~~~l~~~~~-~vNLIPyN~v~g~~~~ 288 (344)
T PRK14464 241 YPIQYQWTLLEGV-NDSDEEMDGIVRLLKGKYA-VMNLIPYNSVDGDAYR 288 (344)
T ss_pred CEEEEEEEEeCCC-CCCHHHHHHHHHHHhcccc-ccceecCCccCCCCcc
Confidence 44555555565 8999999999999998754 7899999999998654
No 125
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.05 E-value=4.4e-08 Score=97.57 Aligned_cols=179 Identities=13% Similarity=0.238 Sum_probs=123.1
Q ss_pred CcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHH---CCCcEEEEEecCCCCCCCCCCCCHHHHHHHHH
Q 013195 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (448)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~---~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~ 267 (448)
..+..|.++-||+.+|+||.... .|-.|..+..+|++++-.+.+ ..+.+|+|.| +|... .++..+++.+.
T Consensus 104 ~~t~CvSsQvGC~m~C~FC~tg~-~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmG-----mGEPL-~N~d~V~~~~~ 176 (342)
T PRK14465 104 RKTICISSQIGCTLNCKFCATAK-LEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMG-----MGEPM-HNYFNVIRAAS 176 (342)
T ss_pred ceEEEEEecCCCCCCCCCCcCCC-CCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEc-----CCcch-hhHHHHHHHHH
Confidence 46789999999999999998765 355688899999999977654 3578899988 34433 23444554443
Q ss_pred HhCCCC-----CcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhc---CCCCCHHHHHHHHHHH
Q 013195 268 AELPPD-----GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTL 339 (448)
Q Consensus 268 ~~~~~~-----~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m---~R~~t~e~~~~~i~~i 339 (448)
- +... +...+++++ +. +.+. +.++..... --.|.+.+-+.+++....+ ++.|..+++.+++...
T Consensus 177 ~-l~~~~~~~~~~r~itvST-~G--~~~~---i~~l~~~~~-~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~ 248 (342)
T PRK14465 177 I-LHDPDAFNLGAKRITIST-SG--VVNG---IRRFIENKE-PYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDF 248 (342)
T ss_pred H-HhChhhhcCCCCeEEEeC-CC--chHH---HHHHHhhcc-CceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHH
Confidence 2 2110 123666653 22 2233 333443221 1278888999999999666 6889999999999976
Q ss_pred HHhCC-CCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecee
Q 013195 340 IELVP-GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386 (448)
Q Consensus 340 r~~~p-gi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p 386 (448)
.+... .+.+..-+|=|+ .++++++++..++++.++ .++++-+|.|
T Consensus 249 ~~~~~r~v~ieyvLI~Gv-NDs~eda~~L~~ll~~l~-~kVnLIPyN~ 294 (342)
T PRK14465 249 TRELKRRITFEYVMIPGV-NMGRENANKLVKIARSLD-CKINVIPLNT 294 (342)
T ss_pred HHHcCCEEEEEEEEECCc-cCCHHHHHHHHHHHhhCC-CcEEEEccCC
Confidence 64422 245555556565 589999999999999987 5788889988
No 126
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.02 E-value=7.9e-08 Score=96.24 Aligned_cols=187 Identities=16% Similarity=0.258 Sum_probs=126.6
Q ss_pred CcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHC------CCcEEEEEecCCCCCCCCCC--CCHHHH
Q 013195 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDIG--VNLPIL 262 (448)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~------G~~ei~~~~~~~~~yg~d~~--~~l~~l 262 (448)
..+..|..+.||+.+|.||..+. .|..|..++++|++++..+... ....|+|.|. |.... ..+.++
T Consensus 109 r~t~CvSsQvGC~~~C~FCatg~-~g~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGm-----GEPL~N~d~v~~~ 182 (356)
T PRK14462 109 KYTVCVSSQVGCKVGCAFCLTAK-GGFVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGM-----GEPLDNLDNVSKA 182 (356)
T ss_pred CceEeeeccccCCCCCccCCCCC-CCCcccCCHHHHHHHHHHHHHhhhccccccCCeEEeCC-----cccccCHHHHHHH
Confidence 46679999999999999998764 3557889999999999865442 1446777742 33221 234455
Q ss_pred HHHHHHhCCC-CCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhc---CCCCCHHHHHHHHHH
Q 013195 263 LNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDT 338 (448)
Q Consensus 263 l~~l~~~~~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m---~R~~t~e~~~~~i~~ 338 (448)
++.+.+.... .+...+.+++.- +.+. +.++.... .-..+.+.+-+.+++..+.+ ++.|..+++.+.++.
T Consensus 183 l~~l~~~~Gl~~~~r~itVsTsG---~~~~---i~~L~~~d-l~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~ 255 (356)
T PRK14462 183 IKIFSENDGLAISPRRQTISTSG---LASK---IKKLGEMN-LGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRK 255 (356)
T ss_pred HHHhcCccCCCcCCCceEEECCC---ChHH---HHHHHhcC-CCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHH
Confidence 5555432100 011255665432 1233 33333332 11356778999999999655 467888999998874
Q ss_pred HH-HhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 013195 339 LI-ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (448)
Q Consensus 339 ir-~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~ 392 (448)
.. +.-..+.+..-+|=|+ .+++++.++..++++.++ .++++-+|.|+++.+.
T Consensus 256 y~~~~~~~i~ieyvLI~Gv-NDs~e~a~~La~llk~l~-~~VnLIPyn~~~~~~~ 308 (356)
T PRK14462 256 FPIDQRKRVMFEYLVIKDV-NDDLKSAKKLVKLLNGIK-AKVNLILFNPHEGSKF 308 (356)
T ss_pred HHHHhCCeEEEEEEEECCC-CCCHHHHHHHHHHHhhcC-cEEEEEeCCCCCCCCC
Confidence 44 4422367777888887 899999999999999986 5899999999988764
No 127
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=99.01 E-value=1.3e-08 Score=97.53 Aligned_cols=229 Identities=17% Similarity=0.277 Sum_probs=148.0
Q ss_pred CCcEEEEEeC--CCCCCCccceeeCc-----------cCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC
Q 013195 190 NKFVEILPIN--VGCLGACTYCKTKH-----------ARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256 (448)
Q Consensus 190 ~~~~~~i~is--rGC~~~CsFC~~~~-----------~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~ 256 (448)
+...+++.+. .||..+|+||.... .|+.+...+++++++-+..-.. .++.|.+.- .+|++..
T Consensus 27 ~~~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g-~~~rici~~---i~~p~~~- 101 (339)
T COG2516 27 RPTTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLG-NFKRICIQQ---IAYPRAL- 101 (339)
T ss_pred ccceeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhc-cccccccee---ecccccc-
Confidence 4567788888 89999999996432 1222333345555555443222 235555432 2233321
Q ss_pred CCHHHHHHHHHHhCCCCCcceEEEe-ecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCC----CCCHHH
Q 013195 257 VNLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR----EYTLSD 331 (448)
Q Consensus 257 ~~l~~ll~~l~~~~~~~~~~~iri~-~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R----~~t~e~ 331 (448)
.++..+++++...+. ..+.+. .+.+....+.+.+.. +.+ ...+.++++..+.++++.+.| .|+++.
T Consensus 102 ~d~~~i~~~~~~~~~----~~itiseci~~~~~~~~l~e~~---klg--~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~ 172 (339)
T COG2516 102 NDLKLILERLHIRLG----DPITISECITAVSLKEELEEYR---KLG--ADYLGVAEDAANEELFEKVRKTSGSPHSWER 172 (339)
T ss_pred chhhhhhhhhhhccC----CceehhhhhhcccchHHHHHHH---hcc--hhhhhHHHHhcCHHHHHHHHhccCCCCcHHH
Confidence 345666666653222 233332 123333233433333 332 468899999999999988744 388999
Q ss_pred HHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHH
Q 013195 332 FRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411 (448)
Q Consensus 332 ~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~ 411 (448)
+.+.++++.++|+.-++...+|+|+ |||++++.+++..+.+.+. .++.|.|.|..||.+.+.+.+|- +..++.+...
T Consensus 173 ~~~~l~~~~~~~~k~rv~ihliVgl-GesD~~~ve~~~~v~~~g~-~v~Lfaf~P~~gt~me~r~~~pv-e~Yrk~q~a~ 249 (339)
T COG2516 173 YWEFLEKVAEAFGKGRVGIHLIVGL-GESDKDIVETIKRVRKRGG-IVSLFAFTPLKGTQMENRKPPPV-ERYRKIQVAR 249 (339)
T ss_pred HHHHHHHHHHHhccCCcceeEEecc-CCchHHHHHHHHHHHhcCc-eEEEEEecccccccccCCCCCcH-HHHHHHHHHH
Confidence 9999999999998789999999995 9999999999999999875 79999999999999988765544 2334444334
Q ss_pred HHHH-hhchhhcCCCcEEEEEEEEE
Q 013195 412 SVFE-AFTPYLGMEGRVERIWITEI 435 (448)
Q Consensus 412 ~~~~-~~~~~~~~~g~~~~vlve~~ 435 (448)
-++. ....+..+.|....-||+++
T Consensus 250 yli~~G~v~~~~~~fde~g~lI~~i 274 (339)
T COG2516 250 YLIGNGEVDLEDFEFDEFGNLIDSI 274 (339)
T ss_pred HHHhcCccchhhcccccccceeccc
Confidence 3333 12335566666666666633
No 128
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.97 E-value=9.4e-08 Score=95.66 Aligned_cols=187 Identities=14% Similarity=0.249 Sum_probs=121.5
Q ss_pred CCcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHC---CCcEEEEEecCCCCCCCCCC--CCHHHHHH
Q 013195 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIG--VNLPILLN 264 (448)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~---G~~ei~~~~~~~~~yg~d~~--~~l~~ll~ 264 (448)
....++|.++-||+.+|.||..+. .|..|..++++|++++...... ....+++.|. |...- ..+.++++
T Consensus 99 ~~~t~cvSsqvGC~~~C~FC~tg~-~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mgg-----GEPLln~d~v~~~l~ 172 (342)
T PRK14454 99 HGNSICVSTQVGCRMGCKFCASTI-GGMVRNLTAGEMLDQILAAQNDIGERISNIVLMGS-----GEPLDNYENVMKFLK 172 (342)
T ss_pred CCCEEEEEcCCCCCCcCCcCCCCC-CCCcccCCHHHHHHHHHHHHHHhcCCCCCEEEECC-----chhhcCHHHHHHHHH
Confidence 356789999999999999998753 3557889999999999876542 2455565442 33221 23455555
Q ss_pred HHHHhCCC-CCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcC---CCCCHHHHHHHHHH-H
Q 013195 265 AIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDT-L 339 (448)
Q Consensus 265 ~l~~~~~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~---R~~t~e~~~~~i~~-i 339 (448)
.+.+.... -+...+.+++.- +.+. +.++......+ .+.+.+-+.+++..+.+. +.+..+++.+++.. +
T Consensus 173 ~l~~~~gi~~~~r~itvsTsG---~~p~---i~~l~~~~~~~-~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~ 245 (342)
T PRK14454 173 IVNSPYGLNIGQRHITLSTCG---IVPK---IYELADENLQI-TLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYI 245 (342)
T ss_pred HHhcccccCcCCCceEEECcC---ChhH---HHHHHhhcccc-eEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHH
Confidence 55432100 011255666421 1122 23333322112 367889999999996653 45788888777765 4
Q ss_pred HHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCc
Q 013195 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 391 (448)
Q Consensus 340 r~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~ 391 (448)
.+.-..+.+..-+|=|+ .++++++++..++++.+. ..+++-+|.|.++..
T Consensus 246 ~~~~~rv~iey~LI~gv-NDs~eda~~La~llk~l~-~~VnLiPyn~~~~~~ 295 (342)
T PRK14454 246 NKTNRRITFEYALVKGV-NDSKEDAKELGKLLKGML-CHVNLIPVNEVKENG 295 (342)
T ss_pred HHhCCEEEEEEEeECCC-CCCHHHHHHHHHHHhcCC-ceEEEEecCCCCCCC
Confidence 44412366777778777 799999999999999874 488999999987763
No 129
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=98.97 E-value=5.8e-08 Score=96.54 Aligned_cols=184 Identities=17% Similarity=0.226 Sum_probs=117.9
Q ss_pred EEEEEeCCCCCCCccceeeCccCCCcc-ccCHHHHHHHHHHHHH-CCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhC
Q 013195 193 VEILPINVGCLGACTYCKTKHARGHLG-SYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg~~r-sr~~e~Iv~ei~~l~~-~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~ 270 (448)
.+.+.++.||+.+|.||..... +..+ ..+.+++.+-+..+.+ .++++|.|+|++..... | ..|.++++.+.. +
T Consensus 97 r~l~~~t~~Cn~~Cr~C~~~~~-~~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~-d--~~L~~ll~~l~~-i 171 (321)
T TIGR03821 97 RVLLIVTGGCAINCRYCFRRHF-PYQENQPNKAQWKEALEYIAQHPEINEVILSGGDPLMAK-D--HRLDWLLNLLEQ-I 171 (321)
T ss_pred EEEEEeCCCcCCcCcCCCCCCc-CCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCcccccCC-c--hHHHHHHHHHHh-C
Confidence 3566799999999999986432 1112 1223333332444443 48999999998776542 1 247888888865 4
Q ss_pred CCCCcceEEEee----cCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Q 013195 271 PPDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346 (448)
Q Consensus 271 ~~~~~~~iri~~----~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi 346 (448)
+ ....+|+.+ +.|..+++. +.++++..+.-..+.+.+.+.. ++ .+++.++++.++++ |+
T Consensus 172 ~--~~~~iri~tr~~~~~p~rit~e---l~~~L~~~~~~~~~~~h~dh~~-Ei---------~d~~~~ai~~L~~~--Gi 234 (321)
T TIGR03821 172 P--HLKRLRIHTRLPVVIPDRITSG---LCDLLANSRLQTVLVVHINHAN-EI---------DAEVADALAKLRNA--GI 234 (321)
T ss_pred C--CCcEEEEecCcceeeHHHhhHH---HHHHHHhcCCcEEEEeeCCChH-hC---------cHHHHHHHHHHHHc--CC
Confidence 4 456778774 345545543 4444444332122234555542 32 25688899999999 97
Q ss_pred EEEEEE--EEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCCCCCHHH
Q 013195 347 QIATDI--ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402 (448)
Q Consensus 347 ~i~~~~--IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~~v~~~~ 402 (448)
.+.... +=|+ .++.+++.+..+.+.++++...++|.+.|..|+.-+ .++.+.
T Consensus 235 ~v~~qtvllkgi-NDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~f---~v~~~~ 288 (321)
T TIGR03821 235 TLLNQSVLLRGV-NDNADTLAALSERLFDAGVLPYYLHLLDKVQGAAHF---DVDDER 288 (321)
T ss_pred EEEecceeeCCC-CCCHHHHHHHHHHHHHcCCeeCcccccCCCCCcccc---cCCHHH
Confidence 654433 3344 578999999999999999988889999999887643 344543
No 130
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=98.92 E-value=1.3e-08 Score=95.36 Aligned_cols=180 Identities=21% Similarity=0.318 Sum_probs=122.8
Q ss_pred EEEeCCCCCCCccceeeCccCCC--ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC-CCHHHHHHHHHHhCC
Q 013195 195 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELP 271 (448)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg~--~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~-~~l~~ll~~l~~~~~ 271 (448)
++-.++-|...|.||++...|.+ .-...|+...+. +.+-|...|+|++.|-... .|.+ ..|++-++.|...-
T Consensus 114 IMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeA---IasWgl~YiVlTSVDRDDl-pDgGa~HiAkTVq~iK~k~- 188 (360)
T KOG2672|consen 114 IMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEA---IASWGLDYIVLTSVDRDDL-PDGGANHIAKTVQKIKEKA- 188 (360)
T ss_pred EEeecCccccCcceeeeecCCCCcCCCCCCcccHHHH---HHHcCCCeEEEEecccccC-cCcchHHHHHHHHHHHhhC-
Confidence 45568899999999999987753 444456665544 4567999999998643222 1112 46888888887643
Q ss_pred CCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Q 013195 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351 (448)
Q Consensus 272 ~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~ 351 (448)
..+-+..+.|+.--+ ++.+..+. ..++ .-+.-.+|+.-.=.--.-.|..+..|-+.+++.+++..|++...+.
T Consensus 189 ----p~ilvE~L~pDF~Gd-~~~Ve~va-~SGL-DV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litkts 261 (360)
T KOG2672|consen 189 ----PEILVECLTPDFRGD-LKAVEKVA-KSGL-DVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTS 261 (360)
T ss_pred ----cccchhhcCccccCc-hHHHHHHH-hcCc-cceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCCceehhh
Confidence 355566667764433 23233333 3333 2222244443221111113456888999999999999999888899
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeC
Q 013195 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387 (448)
Q Consensus 352 ~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~ 387 (448)
+|+|+ |||+|++.+|++.++....|.+.+.+|++-
T Consensus 262 iMlgl-getdeei~~tl~dLr~~~vdv~t~gqym~p 296 (360)
T KOG2672|consen 262 IMLGL-GETDEEIKQTLKDLRAADVDVVTFGQYMQP 296 (360)
T ss_pred hhhcc-CCCHHHHHHHHHHHHHcCCcEEecccccCC
Confidence 99998 999999999999999999999888888653
No 131
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=98.92 E-value=1.2e-07 Score=94.35 Aligned_cols=171 Identities=16% Similarity=0.152 Sum_probs=115.9
Q ss_pred eCCCCCCCccceeeCccCC------CccccCHHHHHHHHHHHHH---CC-----------------CcEEEEEe-cCCCC
Q 013195 198 INVGCLGACTYCKTKHARG------HLGSYTVESLVGRVRTVIA---DG-----------------VKEVWLSS-EDTGA 250 (448)
Q Consensus 198 isrGC~~~CsFC~~~~~rg------~~rsr~~e~Iv~ei~~l~~---~G-----------------~~ei~~~~-~~~~~ 250 (448)
+..||+.+|.||..+.... ..+..++++|++++..... .| .+.+.|++ +....
T Consensus 64 ~~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL 143 (322)
T PRK13762 64 VVAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPTL 143 (322)
T ss_pred hhHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccccc
Confidence 4568999999998765432 1346679999999976532 12 22355442 12222
Q ss_pred CCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCC---C
Q 013195 251 YGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE---Y 327 (448)
Q Consensus 251 yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~---~ 327 (448)
+ ..|.++++.+.+. +. .+.+. +|.. +.+. +..+ .. + ...+.+.+.+.+++..+.+.|+ .
T Consensus 144 ~-----p~l~eli~~~k~~----Gi-~~~L~-TNG~-~~e~---l~~L-~~-~-~d~i~VSLda~~~e~~~~i~~~~~~~ 205 (322)
T PRK13762 144 Y-----PYLPELIEEFHKR----GF-TTFLV-TNGT-RPDV---LEKL-EE-E-PTQLYVSLDAPDEETYKKINRPVIPD 205 (322)
T ss_pred h-----hhHHHHHHHHHHc----CC-CEEEE-CCCC-CHHH---HHHH-Hh-c-CCEEEEEccCCCHHHHHHHhCCCCCC
Confidence 2 3578888888753 32 44444 4553 2332 3333 21 2 3678899999999999999774 5
Q ss_pred CHHHHHHHHHHHHHhCCCC--EEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCc
Q 013195 328 TLSDFRTVVDTLIELVPGM--QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 391 (448)
Q Consensus 328 t~e~~~~~i~~ir~~~pgi--~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~ 391 (448)
+++.+.+.++.+++. +. .+.+.++ ||.+..+..+.++++++++++.+.+.+|.+.....
T Consensus 206 ~~~~vl~~L~~l~~~--~~~~~ir~tlv---~g~Nd~e~~~~a~l~~~~~~~~Iel~~y~~~G~~k 266 (322)
T PRK13762 206 AWERILETLELLPSK--KTRTVIRITLV---KGYNMHDPEGFAKLIERANPDFVEVKAYMHVGYSR 266 (322)
T ss_pred cHHHHHHHHHHHHhC--CCCEEEEEEEE---CCcCccHHHHHHHHHHHcCCCEEEEECCeECCCcc
Confidence 899999999999998 54 4554444 55566666688999999999999999999876653
No 132
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.92 E-value=1.8e-07 Score=89.69 Aligned_cols=200 Identities=19% Similarity=0.309 Sum_probs=134.0
Q ss_pred EEEeCCCCCCCccceeeCc---cCCC--ccccCHHHHHHHHHHHHHC--CCcEEEEEec-CCCCCCCCCCCCHHHHHHHH
Q 013195 195 ILPINVGCLGACTYCKTKH---ARGH--LGSYTVESLVGRVRTVIAD--GVKEVWLSSE-DTGAYGRDIGVNLPILLNAI 266 (448)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~---~rg~--~rsr~~e~Iv~ei~~l~~~--G~~ei~~~~~-~~~~yg~d~~~~l~~ll~~l 266 (448)
-+.-+.||+.+|-||++.. .|-+ ...-.+|.+++..+..++. +.-|..+-|+ +.+.| ..+.++++++
T Consensus 110 qVRp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lY-----P~l~~lVqal 184 (414)
T COG2100 110 QVRPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLY-----PHLVDLVQAL 184 (414)
T ss_pred EecCCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccc-----hhHHHHHHHH
Confidence 4556889999999999853 1111 1223589999999888774 2345555444 22223 4688999999
Q ss_pred HHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhc-CC-CCCHHHHHHHHHHHHHhCC
Q 013195 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM-NR-EYTLSDFRTVVDTLIELVP 344 (448)
Q Consensus 267 ~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m-~R-~~t~e~~~~~i~~ir~~~p 344 (448)
.. ++ +...+.+. +|...+++.+ +.++ ..++ ..++.+.+.|.+++.-+.| ++ -|+++.+++.++.+.+.
T Consensus 185 k~-~~--~v~vVSmQ-Tng~~L~~~l--v~eL-eeAG-LdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a-- 254 (414)
T COG2100 185 KE-HK--GVEVVSMQ-TNGVLLSKKL--VDEL-EEAG-LDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANA-- 254 (414)
T ss_pred hc-CC--CceEEEEe-eCceeccHHH--HHHH-HHhC-CceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhC--
Confidence 76 45 56666655 4666566544 3333 3444 5899999999999988665 44 48999999999999998
Q ss_pred CCEEE-EEEEEeCCCCCHHHHHHHHHHHHhcCC----CeEEEEeceeCC-CCcccCCCCCCHHHHHHHHHHHH
Q 013195 345 GMQIA-TDIICGFPGETDEDFNQTVNLIKEYKF----PQVHISQFYPRP-GTPAARMKKVPSAVVKKRSRELT 411 (448)
Q Consensus 345 gi~i~-~~~IvG~PgET~ed~~~tl~~i~~l~~----~~v~i~~~~p~p-GT~~~~~~~v~~~~~~~R~~~l~ 411 (448)
+|.+- +=++ +||=+++++...++|+.+++. ..+.++.|.|+. |-.....+..|-.+-.+++.++.
T Consensus 255 ~idvlIaPv~--lPG~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLrelE 325 (414)
T COG2100 255 GIDVLIAPVW--LPGVNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLRELE 325 (414)
T ss_pred CCCEEEeeee--cCCcChHHHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHHHHH
Confidence 87543 2233 488899999999999999953 356777887764 22222223445555555554443
No 133
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=98.89 E-value=2.7e-07 Score=90.79 Aligned_cols=187 Identities=17% Similarity=0.338 Sum_probs=128.5
Q ss_pred CCCcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHC-C------CcEEEEEecCCCCCCCCCCCCHHH
Q 013195 189 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-G------VKEVWLSSEDTGAYGRDIGVNLPI 261 (448)
Q Consensus 189 ~~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~-G------~~ei~~~~~~~~~yg~d~~~~l~~ 261 (448)
....+..|.++-||+-.|+||.+.. .|-.|-.+..+|++++..+.+. | +..|+|.|- |... .++..
T Consensus 98 ~~r~tlCVSsQvGC~~~C~FCaTg~-~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGM-----GEPl-~N~dn 170 (349)
T COG0820 98 KDRNTLCVSSQVGCPVGCTFCATGQ-GGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGM-----GEPL-LNLDN 170 (349)
T ss_pred cCCceEEEecCCCcCCCCCeecccc-ccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecC-----Cchh-hhHHH
Confidence 3457788999999999999999765 3668899999999999887642 2 456778773 4332 24455
Q ss_pred HHHHHHHhCCCCC--c--ceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhc---CCCCCHHHHHH
Q 013195 262 LLNAIVAELPPDG--S--TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRT 334 (448)
Q Consensus 262 ll~~l~~~~~~~~--~--~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m---~R~~t~e~~~~ 334 (448)
++.++.-.....+ . ..++++ +..+.+.+.++.. .... ..+.+.+.+.+++..+.+ ||.|+.++..+
T Consensus 171 V~~a~~i~~~~~G~~ls~R~iTvS---TsGi~~~I~~l~~--~~~~--v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~ 243 (349)
T COG0820 171 VVKALEIINDDEGLGLSKRRITVS---TSGIVPRIRKLAD--EQLG--VALAISLHAPNDELRDQLMPINKKYPIEELLE 243 (349)
T ss_pred HHHHHHhhcCcccccccceEEEEe---cCCCchhHHHHHh--hcCC--eEEEEecCCCCHHHHhhhhccccCCCHHHHHH
Confidence 5555543221111 1 233443 3334444444432 2222 378899999999988655 77899999888
Q ss_pred HHHHHHHhCCC-CEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCc
Q 013195 335 VVDTLIELVPG-MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 391 (448)
Q Consensus 335 ~i~~ir~~~pg-i~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~ 391 (448)
+++.-.+.-.. +.+..-++=|. .+..++.++.++++..++- +++.-+|-|.||+.
T Consensus 244 a~r~Y~~~t~~rVt~EY~Ll~~V-ND~~e~A~~L~~ll~~~~~-~VNLIP~Np~~~~~ 299 (349)
T COG0820 244 AIRYYPEKSGRRVTFEYVLLDGV-NDSLEHAKELAKLLKGIPC-KVNLIPYNPVPGSD 299 (349)
T ss_pred HHHhhhhccCceEEEEeeecccc-cCCHHHHHHHHHHhcCCCc-eEEEeecCCCCCCC
Confidence 88877765222 45555666665 5668999999999888865 89999999999998
No 134
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=98.87 E-value=2.7e-07 Score=93.89 Aligned_cols=184 Identities=15% Similarity=0.233 Sum_probs=129.9
Q ss_pred CCCcEEEEEeCCCCCCCccceeeCccCC-CccccCHHHHHHHHHHHHHC-CCcEEEEEecCCCCCCCCCCCCHHHHHHHH
Q 013195 189 RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (448)
Q Consensus 189 ~~~~~~~i~isrGC~~~CsFC~~~~~rg-~~rsr~~e~Iv~ei~~l~~~-G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l 266 (448)
+.+-.+.+.++.+|+..|.||.-....| .....+.+++.+-++.+.+. ++++|.|+|+|...... ..|..+++.|
T Consensus 105 rYp~rvLl~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d---~~L~~iL~~L 181 (417)
T TIGR03820 105 RYPDRVLFLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSD---DYLDWILTEL 181 (417)
T ss_pred ccCCEEEEEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEeCCccccCCh---HHHHHHHHHH
Confidence 3455678899999999999997654333 24556788888888877774 99999999998876532 2355567777
Q ss_pred HHhCCCCCcceEEEeec----CCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 013195 267 VAELPPDGSTMLRIGMT----NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (448)
Q Consensus 267 ~~~~~~~~~~~iri~~~----~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~ 342 (448)
.+ ++ ....+|+++- .|..+++. +.++++..+ .+.+++...++.- ..++..+++++++++
T Consensus 182 ~~-Ip--hV~~IRI~TR~pvv~P~RIT~e---ll~~Lk~~~---~~~v~~h~nhp~E--------it~~a~~Al~~L~~a 244 (417)
T TIGR03820 182 RA-IP--HVEVIRIGTRVPVVLPQRITDE---LVAILKKHH---PVWLNTHFNHPRE--------ITASSKKALAKLADA 244 (417)
T ss_pred hh-cC--CCceEEEeeccccccccccCHH---HHHHHHhcC---CeEEEEeCCChHh--------ChHHHHHHHHHHHHc
Confidence 65 55 6667888742 26666654 444444432 2344444444432 258999999999999
Q ss_pred CCCCEEE--EEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCC
Q 013195 343 VPGMQIA--TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395 (448)
Q Consensus 343 ~pgi~i~--~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~ 395 (448)
||.+. +-++=|. .++.+.+.+..+-+.++++.--++|..-+.+||.-|+.
T Consensus 245 --GI~l~nQsVLLkGV-ND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hFrv 296 (417)
T TIGR03820 245 --GIPLGNQSVLLAGV-NDCPRIMKKLVHKLVANRVRPYYLYQCDLSEGLSHFRT 296 (417)
T ss_pred --CCEEEeeceEECCc-CCCHHHHHHHHHHHHHCCCeeceeeeccCCCCcccccC
Confidence 97544 5566674 88999999999988888876667788888899876643
No 135
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=98.86 E-value=2.5e-07 Score=89.42 Aligned_cols=176 Identities=18% Similarity=0.270 Sum_probs=123.6
Q ss_pred CCCCCccceeeCcc----CCCccccCHHHHHHHHHHHHHC------CCcEEEEEecCCCCCCCC-CCCCHHHHHHHHHHh
Q 013195 201 GCLGACTYCKTKHA----RGHLGSYTVESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRD-IGVNLPILLNAIVAE 269 (448)
Q Consensus 201 GC~~~CsFC~~~~~----rg~~rsr~~e~Iv~ei~~l~~~------G~~ei~~~~~~~~~yg~d-~~~~l~~ll~~l~~~ 269 (448)
=|.++|-||..... ..+......+.|.++++.+... ..+.+.|.+. |.. ...+|.++++++.+.
T Consensus 33 ~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~-----GEPTLy~~L~elI~~~k~~ 107 (296)
T COG0731 33 WCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLS-----GEPTLYPNLGELIEEIKKR 107 (296)
T ss_pred hhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCC-----CCcccccCHHHHHHHHHhc
Confidence 49999999986321 1234556789999999988876 3556666542 222 125789999999874
Q ss_pred CCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCC---CHHHHHHHHHHHHHh-CCC
Q 013195 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY---TLSDFRTVVDTLIEL-VPG 345 (448)
Q Consensus 270 ~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~---t~e~~~~~i~~ir~~-~pg 345 (448)
+... .+--+|... .+. +.++. . ...+.+.+.+.+.+.+++++|++ .++.+.+.++.+++. -..
T Consensus 108 ----g~~~-tflvTNgsl-pdv---~~~L~-~---~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~ 174 (296)
T COG0731 108 ----GKKT-TFLVTNGSL-PDV---LEELK-L---PDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGR 174 (296)
T ss_pred ----CCce-EEEEeCCCh-HHH---HHHhc-c---CCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCc
Confidence 3222 222245432 222 22222 2 46788999999999999999985 678888888888885 333
Q ss_pred CEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC
Q 013195 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396 (448)
Q Consensus 346 i~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~ 396 (448)
..+.+.++=|+ ..+++++++..+++++..++.+.+..|+ +||..-+.++
T Consensus 175 ~vir~tlvkg~-N~~~e~~~~~a~ll~~~~Pd~velk~~~-rpgas~~~l~ 223 (296)
T COG0731 175 TVIRTTLVKGI-NDDEEELEEYAELLERINPDFVELKTYM-RPGASRYRLP 223 (296)
T ss_pred EEEEEEEeccc-cCChHHHHHHHHHHHhcCCCeEEEecCc-cCChHhhccC
Confidence 67888888888 5677889999999999999999998876 4555555443
No 136
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=98.80 E-value=2.6e-08 Score=92.00 Aligned_cols=189 Identities=19% Similarity=0.293 Sum_probs=120.5
Q ss_pred CCCCCCCccceeeCcc--CC--CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCC
Q 013195 199 NVGCLGACTYCKTKHA--RG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 274 (448)
Q Consensus 199 srGC~~~CsFC~~~~~--rg--~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~ 274 (448)
+-||.-.|.||....- .| ..+....++|+++++..++.|-..+.+...=-...|+. ..|..+++.|.+.-...-
T Consensus 91 tGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmGaAWRD~~GRk--~~fk~IlE~ikevr~Mgm 168 (380)
T KOG2900|consen 91 TGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDMKGRK--SAFKRILEMIKEVRDMGM 168 (380)
T ss_pred cCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcCCceeecchhhhhhccch--hHHHHHHHHHHHHHcCCc
Confidence 5699999999976532 24 25778899999999999999999888743200111222 456666666654321111
Q ss_pred cceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE
Q 013195 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354 (448)
Q Consensus 275 ~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~Iv 354 (448)
..-+.+++++-. +..+ ++.+++ ....-.+.+ |-+....+--.-+.++-++.|+.++++ ||.+.+.=|+
T Consensus 169 EvCvTLGMv~~q-------QAke-LKdAGL-TAYNHNlDT-SREyYskvItTRtYDdRL~Ti~nvr~a--GikvCsGGIl 236 (380)
T KOG2900|consen 169 EVCVTLGMVDQQ-------QAKE-LKDAGL-TAYNHNLDT-SREYYSKVITTRTYDDRLQTIKNVREA--GIKVCSGGIL 236 (380)
T ss_pred eeeeeeccccHH-------HHHH-HHhccc-eecccCccc-hhhhhcccceecchHHHHHHHHHHHHh--cceecccccc
Confidence 233455554421 1222 233343 122223333 222222222234678999999999999 9999999999
Q ss_pred eCCCCCHHHHHHHHHHHHhc--CCCeEEEEeceeCCCCcccCCC--CCCHHH
Q 013195 355 GFPGETDEDFNQTVNLIKEY--KFPQVHISQFYPRPGTPAARMK--KVPSAV 402 (448)
Q Consensus 355 G~PgET~ed~~~tl~~i~~l--~~~~v~i~~~~p~pGT~~~~~~--~v~~~~ 402 (448)
|+ ||.++|..-.+-.+..+ .+..+-++.+.+.+|||+.+-. .++-++
T Consensus 237 GL-GE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~~~k~l~i~e 287 (380)
T KOG2900|consen 237 GL-GESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADEKSKKLQIDE 287 (380)
T ss_pred cc-cccccceeeeeeeeccCCCCCcccccceEEecCCcccchhhcccccHHH
Confidence 99 99999866555555555 3678999999999999999743 444433
No 137
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=98.66 E-value=7e-07 Score=84.76 Aligned_cols=187 Identities=19% Similarity=0.247 Sum_probs=121.2
Q ss_pred eCCCCCCCccceeeCccCCCc-cccCHHHHHHHHHHHHHCCCc-EEEEEecCCCCCCCCCC-CCHHHHHHHHHHhCCCCC
Q 013195 198 INVGCLGACTYCKTKHARGHL-GSYTVESLVGRVRTVIADGVK-EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDG 274 (448)
Q Consensus 198 isrGC~~~CsFC~~~~~rg~~-rsr~~e~Iv~ei~~l~~~G~~-ei~~~~~~~~~yg~d~~-~~l~~ll~~l~~~~~~~~ 274 (448)
.+.-|-+.|.||+........ -..++++|++---.+.++.+- .++|.++ +.- ..|.. +.+.+.++.|.-.-. .
T Consensus 60 lTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSSG-vi~-~~DyTmE~mi~var~LRle~~--f 135 (404)
T COG4277 60 LTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSSG-VIK-NPDYTMEEMIEVARILRLEHK--F 135 (404)
T ss_pred HhhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHHhhhhhheeccc-ccc-CcchHHHHHHHHHHHHhhccc--c
Confidence 345599999999875443333 456899999887666665444 4444432 221 12211 123333333331111 2
Q ss_pred cceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC-----------
Q 013195 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV----------- 343 (448)
Q Consensus 275 ~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~----------- 343 (448)
...+.+-. -|..-.+..++ ++ -.+.++++.+|...++-|+.+-..-+.-++.+.+.+++..+
T Consensus 136 ~GYIHlK~-IPgas~~li~e---ag---lyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r 208 (404)
T COG4277 136 RGYIHLKI-IPGASPDLIKE---AG---LYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKR 208 (404)
T ss_pred CcEEEEEe-cCCCCHHHHHH---Hh---hhhheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhhc
Confidence 23444442 23322222222 21 13679999999999999999987777788888888888721
Q ss_pred --CCC---EEEEEEEEeCCCCCHHHHHHHHHHH-HhcCCCeEEEEeceeCCCCcccCC
Q 013195 344 --PGM---QIATDIICGFPGETDEDFNQTVNLI-KEYKFPQVHISQFYPRPGTPAARM 395 (448)
Q Consensus 344 --pgi---~i~~~~IvG~PgET~ed~~~tl~~i-~~l~~~~v~i~~~~p~pGT~~~~~ 395 (448)
|.+ .-+|-+|+|-.|||++++....+.+ ..+.+..+++..|+|.|+||+-..
T Consensus 209 ~tp~fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~~s~~lp~ 266 (404)
T COG4277 209 HTPEFAPAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVPSSPLLPD 266 (404)
T ss_pred cCccccCCCCceEEEEecCCCchHHHHHHHHHHhhccceeEEEeecccccCCCCCCcc
Confidence 222 3568999999999999998877665 566889999999999999998653
No 138
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=98.54 E-value=8.7e-06 Score=83.10 Aligned_cols=165 Identities=16% Similarity=0.173 Sum_probs=110.0
Q ss_pred CccceeeCccCCCccccCHHHHHHHHHHHHHC---CCcEEEEEec-CCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEE
Q 013195 205 ACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSE-DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280 (448)
Q Consensus 205 ~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~---G~~ei~~~~~-~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri 280 (448)
.|.||......-.-+..++++++++++..... ....+.|.|+ +...| ..+.+|++.+.+. +. .+.+
T Consensus 38 ~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~-----~~l~eLl~~lk~~----gi-~taI 107 (404)
T TIGR03278 38 GCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCY-----PELEELTKGLSDL----GL-PIHL 107 (404)
T ss_pred CCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC-----HHHHHHHHHHHhC----CC-CEEE
Confidence 67788544322234677899999999886642 3466777765 44443 3578899988763 22 3455
Q ss_pred eecCCcCh-hHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCC
Q 013195 281 GMTNPPFI-LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359 (448)
Q Consensus 281 ~~~~p~~i-~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgE 359 (448)
.+++...+ .... +.++++.. ...+.+.+.|.++++.+.|-..-..+.+.+.++++.+. ..+.+..-+| ||-
T Consensus 108 ~~TnG~~l~~~e~--~~~L~~~g--ld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e~-~~v~~~ivlI---PGi 179 (404)
T TIGR03278 108 GYTSGKGFDDPEI--AEFLIDNG--VREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCES-CEVHAASVII---PGV 179 (404)
T ss_pred eCCCCcccCCHHH--HHHHHHcC--CCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHhc-CCEEEEEEEe---CCc
Confidence 43453322 3222 44444432 46788999999999998865544558899999998885 2344444445 555
Q ss_pred CH-HHHHHHHHHHHhcCCCeEEEEeceeC
Q 013195 360 TD-EDFNQTVNLIKEYKFPQVHISQFYPR 387 (448)
Q Consensus 360 T~-ed~~~tl~~i~~l~~~~v~i~~~~p~ 387 (448)
++ +++.++++++.++++..+++.+|.+.
T Consensus 180 ND~eel~~ti~~L~~lg~~~V~L~~y~~~ 208 (404)
T TIGR03278 180 NDGDVLWKTCADLESWGAKALILMRFANT 208 (404)
T ss_pred cCcHHHHHHHHHHHHCCCCEEEEEecccc
Confidence 54 55579999999999998988888764
No 139
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.52 E-value=3.3e-05 Score=77.30 Aligned_cols=182 Identities=12% Similarity=0.180 Sum_probs=126.7
Q ss_pred CCcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCC-CcEEEEEecCCCCCCCCCCCCHHHHHHHHHH
Q 013195 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG-VKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (448)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G-~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~ 268 (448)
.+....+.++.-|+.+|.||..........-.+.++..+.+..+.+.| ..-+.|.|.+.... .++.++++...+
T Consensus 17 ~p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPll~-----~d~~ei~~~~~~ 91 (347)
T COG0535 17 PPLVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTGGEPLLR-----PDLLEIVEYARK 91 (347)
T ss_pred CCcEEEEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHcCCeeEEEEeCCCcccc-----ccHHHHHHHHhh
Confidence 355667889999999999997654322134556777776777788888 77777777665543 356778777764
Q ss_pred hCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHH-HHhcCCCCCHHHHHHHHHHHHHhCCCCE
Q 013195 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV-LSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (448)
Q Consensus 269 ~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~v-Lk~m~R~~t~e~~~~~i~~ir~~~pgi~ 347 (448)
. ......+. ++...+++.. +..+. ..+ ..++.+.+++.+++. ....++....+...+.++.+++. |+.
T Consensus 92 ~----~~~~~~~~-TnG~~~~~~~--~~~l~-~~g-~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~--g~~ 160 (347)
T COG0535 92 K----GGIRVSLS-TNGTLLTEEV--LEKLK-EAG-LDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEA--GIL 160 (347)
T ss_pred c----CCeEEEEe-CCCccCCHHH--HHHHH-hcC-CcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHc--CCe
Confidence 3 12333343 4542233332 22233 323 579999999999998 55556678889999999999988 876
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCC
Q 013195 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389 (448)
Q Consensus 348 i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pG 389 (448)
+. +.+..+..+.+++.+..+++.+++.+...++.+.|...
T Consensus 161 ~~--~~~~v~~~n~~~l~~~~~~~~~~g~~~~~~~~~~~~g~ 200 (347)
T COG0535 161 VV--INTTVTKINYDELPEIADLAAELGVDELNVFPLIPVGR 200 (347)
T ss_pred ee--EEEEEecCcHHHHHHHHHHHHHcCCCEEEEEEEeeccc
Confidence 33 33334578999999999999999998888888877543
No 140
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.51 E-value=6.3e-06 Score=80.76 Aligned_cols=188 Identities=19% Similarity=0.200 Sum_probs=123.9
Q ss_pred EEEEeCCCCCCCccceeeCccCCCc-cc----cCHHHHHHHHHHHHH-CCC-cEEEEEecCCCCCCCCCCCCHHHHHHHH
Q 013195 194 EILPINVGCLGACTYCKTKHARGHL-GS----YTVESLVGRVRTVIA-DGV-KEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (448)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~~rg~~-rs----r~~e~Iv~ei~~l~~-~G~-~ei~~~~~~~~~yg~d~~~~l~~ll~~l 266 (448)
-.+..-+||.+.|.||-.....+.. .+ ...+.+++.++.-.. .+. ...+.+|.++-.|.... .-..+.+.+
T Consensus 31 y~inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E--~~~~ltR~i 108 (297)
T COG1533 31 YTLNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIE--KEYRLTRKI 108 (297)
T ss_pred eecCCcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcch--HHHHHHHHH
Confidence 3578889999999999877555433 22 223447777765544 333 34555666777776531 112333333
Q ss_pred HHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCC-CCHHHHHHHHHHHHHhCCC
Q 013195 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPG 345 (448)
Q Consensus 267 ~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~-~t~e~~~~~i~~ir~~~pg 345 (448)
.+.+.. ....+.|. +-...+..+++-|..+.....+ .+.+.+-+.++++.+.+-.+ -+.++-.++++.+.++ |
T Consensus 109 lei~~~-~~~~v~I~-TKS~lv~RDld~l~~~~~~~~v--~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~ea--G 182 (297)
T COG1533 109 LEILLK-YGFPVSIV-TKSALVLRDLDLLLELAERGKV--RVAVSITTLDEELAKILEPRAPSPEERLEALKELSEA--G 182 (297)
T ss_pred HHHHHH-cCCcEEEE-ECCcchhhhHHHHHhhhhccce--EEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHC--C
Confidence 332221 23456665 3333344555555555444333 67788888888888888665 5899999999999999 9
Q ss_pred CEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCC
Q 013195 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389 (448)
Q Consensus 346 i~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pG 389 (448)
+.+...+-==+|+.|++++++.++-+.+.+...+....+.-..+
T Consensus 183 i~~~v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~~l~~~~~ 226 (297)
T COG1533 183 IPVGLFVAPIIPGLNDEELERILEAAAEAGARVVVYGTLRLRLD 226 (297)
T ss_pred CeEEEEEecccCCCChHHHHHHHHHHHHcCCCeeEeeeeeccHH
Confidence 98887776667999999999999999999888766655544433
No 141
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=98.43 E-value=2.4e-05 Score=80.73 Aligned_cols=181 Identities=12% Similarity=0.105 Sum_probs=113.7
Q ss_pred CcEEEEE-eCCCCCCCccceeeCccCC-----CccccCHHHHHHHHHHHHHC-CCcE--EEEEecCCCCCCCCCCCCHHH
Q 013195 191 KFVEILP-INVGCLGACTYCKTKHARG-----HLGSYTVESLVGRVRTVIAD-GVKE--VWLSSEDTGAYGRDIGVNLPI 261 (448)
Q Consensus 191 ~~~~~i~-isrGC~~~CsFC~~~~~rg-----~~rsr~~e~Iv~ei~~l~~~-G~~e--i~~~~~~~~~yg~d~~~~l~~ 261 (448)
++...++ ++..|+.+|+||......+ .....+.+.+.+-|+.+.+. +... |.|.|+.....+.. .+.+
T Consensus 12 p~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~---~~~~ 88 (412)
T PRK13745 12 PLYIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLS---FYKK 88 (412)
T ss_pred ceEEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHH---HHHH
Confidence 3455566 4579999999998643211 11346777776667776654 5444 55566665554321 1233
Q ss_pred HHHHHHHhCCCCCcceEEEe-ecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCC----CCCHHHHHHHH
Q 013195 262 LLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR----EYTLSDFRTVV 336 (448)
Q Consensus 262 ll~~l~~~~~~~~~~~iri~-~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R----~~t~e~~~~~i 336 (448)
+++-+.+... ...+++. .+|...++++. .+.+...++ .|.|.+.+. +++-...++ ..+.+++.+.+
T Consensus 89 ~~~~~~~~~~---~~~i~~~i~TNG~ll~~e~---~~~l~~~~~--~v~ISlDG~-~~~hD~~R~~~~g~gsf~~v~~~i 159 (412)
T PRK13745 89 ALELQKKYAR---GRQIDNCIQTNGTLLTDEW---CEFFRENNF--LVGVSIDGP-QEFHDEYRKNKMGKPSFVKVMKGI 159 (412)
T ss_pred HHHHHHHHcC---CCceEEEEeecCEeCCHHH---HHHHHHcCe--EEEEEecCC-HHHhhhhcCCCCCCccHHHHHHHH
Confidence 3332222111 2233333 25777676544 333334443 788888875 555554432 25899999999
Q ss_pred HHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeC
Q 013195 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387 (448)
Q Consensus 337 ~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~ 387 (448)
+.++++ |+.+.+-..+. .++.+...+.++++.++++..+++.++.|.
T Consensus 160 ~~l~~~--gi~~~i~~vv~--~~n~~~~~e~~~~~~~lg~~~~~~~p~~~~ 206 (412)
T PRK13745 160 NLLKKH--GVEWNAMAVVN--DFNADYPLDFYHFFKELDCHYIQFAPIVER 206 (412)
T ss_pred HHHHHc--CCCEEEEEEEc--CCccccHHHHHHHHHHcCCCeEEEEeccCc
Confidence 999998 88776655554 567788899999999999999999888774
No 142
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=98.35 E-value=1.8e-05 Score=78.00 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=101.1
Q ss_pred ccCHHHHHHHHHHHHH---CCCcEEEEEecCCCCCCCCCCCCH-HHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHH
Q 013195 220 SYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVNL-PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~---~G~~ei~~~~~~~~~yg~d~~~~l-~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el 295 (448)
..+.+++++++..... .+...|.|+|.+.+.+ .++ .++++.+.+. + ..+.+. ++.....+. +
T Consensus 105 ~~t~eel~~~i~~~~~~~~~~~~~V~~sGGEPll~-----~~~l~~l~~~~k~~----g-~~~~i~-TnG~~~~~~---~ 170 (295)
T TIGR02494 105 EMTVEEVMRVVLRDSIFYRNSGGGVTLSGGEPLLQ-----PEFALALLQACHER----G-IHTAVE-TSGFTPWET---I 170 (295)
T ss_pred CCcHHHHHHHHHHHHHhcccCCCcEEeeCcchhch-----HHHHHHHHHHHHHc----C-CcEeee-CCCCCCHHH---H
Confidence 3467888888876432 2445788888655543 233 4677776542 2 234443 343322233 3
Q ss_pred HHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC--EEEEEEEEeCCCCCHHHHHHHHHHHHh
Q 013195 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM--QIATDIICGFPGETDEDFNQTVNLIKE 373 (448)
Q Consensus 296 ~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi--~i~~~~IvG~PgET~ed~~~tl~~i~~ 373 (448)
.+++.. ...+.+.+.+.+++..+.+.. .+.+.+.+.++.+.+. ++ .+.+-+|-|+ .++.+++.+.++++.+
T Consensus 171 ~~ll~~---~d~~~isl~~~~~~~~~~~~g-~~~~~vl~~i~~l~~~--~~~~~i~~~~v~~~-n~~~~ei~~l~~~~~~ 243 (295)
T TIGR02494 171 EKVLPY---VDLFLFDIKHLDDERHKEVTG-VDNEPILENLEALAAA--GKNVVIRIPVIPGF-NDSEENIEAIAAFLRK 243 (295)
T ss_pred HHHHhh---CCEEEEeeccCChHHHHHHhC-CChHHHHHHHHHHHhC--CCcEEEEeceeCCc-CCCHHHHHHHHHHHHH
Confidence 344432 345678889999988877643 4678899999999988 64 4555556565 4778999999999999
Q ss_pred cC--CCeEEEEeceeCCCCcc
Q 013195 374 YK--FPQVHISQFYPRPGTPA 392 (448)
Q Consensus 374 l~--~~~v~i~~~~p~pGT~~ 392 (448)
++ +..+++.+|.|.+..+.
T Consensus 244 ~~~~v~~v~l~~~~~~g~~~~ 264 (295)
T TIGR02494 244 LEPGVDEIDLLPYHRLGENKY 264 (295)
T ss_pred hccCCceEEecCCCchhHHHH
Confidence 98 67899999999877664
No 143
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=98.28 E-value=7.5e-05 Score=71.22 Aligned_cols=147 Identities=17% Similarity=0.234 Sum_probs=91.0
Q ss_pred EEEEeCCCCCCCccceeeCccC-----CCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHH
Q 013195 194 EILPINVGCLGACTYCKTKHAR-----GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (448)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~~r-----g~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~ 268 (448)
.||. ..||+.+|.||..+... +.++..+.++++++++.+...|++.|.|+|.+...+ ..+.+|++.+.+
T Consensus 25 ~FvR-~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGGEPll~-----~~l~~li~~l~~ 98 (238)
T TIGR03365 25 MFVR-TGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGGNPALQ-----KPLGELIDLGKA 98 (238)
T ss_pred EEEE-eCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCCchhhh-----HhHHHHHHHHHH
Confidence 3454 45999999999876532 123457899999999888766789999999776654 357889988875
Q ss_pred hCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEE
Q 013195 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (448)
Q Consensus 269 ~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i 348 (448)
. + ..+.+. +|.....+. + .. +..+.+.+-..+. .+ ....+...++++.+++ +...
T Consensus 99 ~----g-~~v~le-TNGtl~~~~---l----~~---~d~v~vs~K~~~s----g~--~~~~~~~~~~ik~l~~---~~~~ 153 (238)
T TIGR03365 99 K----G-YRFALE-TQGSVWQDW---F----RD---LDDLTLSPKPPSS----GM--ETDWQALDDCIERLDD---GPQT 153 (238)
T ss_pred C----C-CCEEEE-CCCCCcHHH---H----hh---CCEEEEeCCCCCC----CC--CCcHHHHHHHHHHhhh---cCce
Confidence 3 2 345565 565433321 1 11 2355565554433 11 2246666777777765 4566
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 013195 349 ATDIICGFPGETDEDFNQTVNLIKEYK 375 (448)
Q Consensus 349 ~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (448)
..-|+++ ++.|++...++.....
T Consensus 154 ~vK~Vv~----~~~d~~~a~~~~~~~~ 176 (238)
T TIGR03365 154 SLKVVVF----DDADYAYAKEVHARYP 176 (238)
T ss_pred EEEEEEC----CcccHHHHHHHHHhcC
Confidence 6677777 2333555555555443
No 144
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=98.28 E-value=0.00013 Score=74.29 Aligned_cols=173 Identities=16% Similarity=0.203 Sum_probs=105.1
Q ss_pred EEeCCCCCCCccceeeCccCC-C----ccccCHHHHHHHHHHHHHC--CCcEEEEEecCCCCCCCCCCCCHHHHHHHHHH
Q 013195 196 LPINVGCLGACTYCKTKHARG-H----LGSYTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (448)
Q Consensus 196 i~isrGC~~~CsFC~~~~~rg-~----~rsr~~e~Iv~ei~~l~~~--G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~ 268 (448)
++++.+|+.+|.||..+.... . ....+.+.+..-++.+.+. +...|.|+|........+ .+.++++.+.+
T Consensus 9 ~~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGEPll~~~~---~~~~~~~~~~~ 85 (370)
T PRK13758 9 KPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPTLAGLE---FFEELMELQRK 85 (370)
T ss_pred ecCCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECCccccCChH---HHHHHHHHHHH
Confidence 445589999999998654211 1 1124444444444545443 455788887665544211 13455555543
Q ss_pred hCCCCCcceEEEe-ecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCC----CCCHHHHHHHHHHHHHhC
Q 013195 269 ELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR----EYTLSDFRTVVDTLIELV 343 (448)
Q Consensus 269 ~~~~~~~~~iri~-~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R----~~t~e~~~~~i~~ir~~~ 343 (448)
. .. ....+.+. .+|...+++.. .+.+...++ .+.+.+.+. +++-..+++ ..+.+.+.+.++.+++.
T Consensus 86 ~-~~-~~~~~~~~i~TNG~ll~~~~---~~~l~~~~~--~v~iSlDg~-~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~- 156 (370)
T PRK13758 86 H-NY-KNLKIYNSLQTNGTLIDESW---AKFLSENKF--LVGLSMDGP-KEIHNLNRKDCCGLDTFSKVERAAELFKKY- 156 (370)
T ss_pred h-cc-CCCeEEEEEEecCEecCHHH---HHHHHHcCc--eEEEeecCC-HHHhccccCCCCCCccHHHHHHHHHHHHHh-
Confidence 2 10 11222222 25666666543 233333333 678888886 555555543 46889999999999998
Q ss_pred CCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEe
Q 013195 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383 (448)
Q Consensus 344 pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~ 383 (448)
++.+..-+++. ..+.+++.+.++++.+++++.+.+..
T Consensus 157 -~~~~~i~~~v~--~~n~~~l~~i~~~~~~~g~~~~~~~~ 193 (370)
T PRK13758 157 -KVEFNILCVVT--SNTARHVNKIYKYFKEKDFKFLQFIN 193 (370)
T ss_pred -CCCceEEEEec--cccccCHHHHHHHHHHcCCCeEeeee
Confidence 77666666665 35678899999999999998776654
No 145
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=98.24 E-value=8.7e-05 Score=73.02 Aligned_cols=185 Identities=19% Similarity=0.277 Sum_probs=129.9
Q ss_pred CCCcEEEEEeCCCCCCCccceeeCccCCC-ccccCHHHHHHHHHHHHHC-CCcEEEEEecCCCCCCCCCCCCHHHHHHHH
Q 013195 189 RNKFVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (448)
Q Consensus 189 ~~~~~~~i~isrGC~~~CsFC~~~~~rg~-~rsr~~e~Iv~ei~~l~~~-G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l 266 (448)
+.+-.+.+..+.+|+-.|.||.-..+-|. -..++.+++-.-+.++.+. -+++|.|+|+|...... ..|..|+++|
T Consensus 108 rY~drvLll~t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~hPeI~eVllSGGDPL~ls~---~~L~~ll~~L 184 (369)
T COG1509 108 RYPDRVLLLVTGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAHPEIREVLLSGGDPLSLSD---KKLEWLLKRL 184 (369)
T ss_pred ecCCeEEEEecCcccceeeecccccccccccccCCHHHHHHHHHHHHcCchhheEEecCCCccccCH---HHHHHHHHHH
Confidence 34567889999999999999976655443 2335888887777777765 68999999988776532 4688899999
Q ss_pred HHhCCCCCcceEEEee----cCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 013195 267 VAELPPDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (448)
Q Consensus 267 ~~~~~~~~~~~iri~~----~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~ 342 (448)
.+ ++ -...+||++ +.|..+++.+ .+++.....-.++..-+.|..+ =..+..+++++++++
T Consensus 185 ~~-Ip--Hv~iiRi~TR~pvv~P~RIt~~L---~~~l~~~~~~v~~~tH~NHp~E----------it~e~~~A~~~L~~a 248 (369)
T COG1509 185 RA-IP--HVKIIRIGTRLPVVLPQRITDEL---CEILGKSRKPVWLVTHFNHPNE----------ITPEAREACAKLRDA 248 (369)
T ss_pred hc-CC--ceeEEEeecccceechhhccHHH---HHHHhccCceEEEEcccCChhh----------cCHHHHHHHHHHHHc
Confidence 75 55 678999986 3566666554 4444442211233333333332 135789999999999
Q ss_pred CCCCEEE--EEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCC
Q 013195 343 VPGMQIA--TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395 (448)
Q Consensus 343 ~pgi~i~--~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~ 395 (448)
|+.+. +=++=|. .++.+.+.+.++-+...++---++|..-+.+|+.-+..
T Consensus 249 --Gv~l~NQsVLLrGV-ND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr~ 300 (369)
T COG1509 249 --GVPLLNQSVLLRGV-NDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFRV 300 (369)
T ss_pred --Cceeecchheeccc-CCCHHHHHHHHHHHHHcCCcceEEeccCccCCccceec
Confidence 97543 3445555 88999999888888888876667778888889876643
No 146
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=98.23 E-value=7.7e-05 Score=75.64 Aligned_cols=198 Identities=12% Similarity=0.112 Sum_probs=123.2
Q ss_pred CCCCccceeeCccCCCccccCHHHHHHHHHHHHHC-CCcE--EEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceE
Q 013195 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKE--VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTML 278 (448)
Q Consensus 202 C~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~-G~~e--i~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~i 278 (448)
|+.+|.||-.+......+..+.+.+.+-++.+.+. +... |.+.|+.....|. .+.+.+..+.+... ....+
T Consensus 18 CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPlL~~~----~f~~~~~~l~~k~~--~~~~i 91 (378)
T COG0641 18 CNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEPLLAGL----DFYRKAVALQQKYA--NGKTI 91 (378)
T ss_pred cCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCCCCeeEEEEECCccccchH----HHHHHHHHHHHHHh--cCCee
Confidence 99999999877543323345655555556666554 4355 5555655554443 34555555444443 24455
Q ss_pred EEee-cCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcC----CCCCHHHHHHHHHHHHHhCCCCEEEEEEE
Q 013195 279 RIGM-TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN----REYTLSDFRTVVDTLIELVPGMQIATDII 353 (448)
Q Consensus 279 ri~~-~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~----R~~t~e~~~~~i~~ir~~~pgi~i~~~~I 353 (448)
..+. +|...++++. .+.++..++ .|.|.|.. ..++-+..+ -.-|.+.+.+.++.+++. ++.+.+-+.
T Consensus 92 ~~siqTNg~LL~~e~---~e~l~~~~~--~IgISiDG-p~eihD~~R~~~~GkgTfd~i~~~i~~L~~~--~v~~~~~~v 163 (378)
T COG0641 92 SNALQTNGTLLNDEW---AEFLAEHDF--LIGISIDG-PEEIHDKYRVTKSGKGTFDRVMKGLELLQAH--GVDFNTLTV 163 (378)
T ss_pred EEEEEEcccccCHHH---HHHHHhcCc--eEEEeccC-chHhccccccCCCCCccHHHHHHHHHHHHHc--CCcEEEEEE
Confidence 5443 4666666654 445544443 45554433 233333322 235899999999999998 887776666
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHHHHHHHHH
Q 013195 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFE 415 (448)
Q Consensus 354 vG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l~~~~~ 415 (448)
..-++.+...+.++++.+.+...+.+.+..+..++.....+ +++.++-.+.+..+.+.+.
T Consensus 164 --v~~~n~~~~~ei~~~l~~~g~~~i~fip~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~ 224 (378)
T COG0641 164 --VNRQNVLHPEEIYHFLKSEGSKFIQFIPLVESDNRGDSLLEFSVTAEEYGQFLIAIFDEWV 224 (378)
T ss_pred --EchhHhhCHHHHHHHHHHcccceEEEEecccCCCCCccccccccCHHHHHHHHHHHHHHHH
Confidence 56799999999999999999777777666555555431123 6777766677666666554
No 147
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=0.00012 Score=70.70 Aligned_cols=173 Identities=17% Similarity=0.225 Sum_probs=101.8
Q ss_pred cEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHH-HH--HHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHH
Q 013195 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR-TV--IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (448)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~-~l--~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~ 268 (448)
...+.-...|||++|.||..+.....-+..+.+++..|+- .. ...+..-|.++|.+....- ..+.++++...+
T Consensus 35 ~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~gvt~SGGEP~~q~----e~~~~~~~~ake 110 (260)
T COG1180 35 SIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYSESGGGVTFSGGEPTLQA----EFALDLLRAAKE 110 (260)
T ss_pred cEEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhcCCCCEEEEECCcchhhH----HHHHHHHHHHHH
Confidence 3556778999999999999876543212333444433322 11 1236677888875543321 234566666654
Q ss_pred hCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC--
Q 013195 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-- 346 (448)
Q Consensus 269 ~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi-- 346 (448)
. .....+. ++...-.+..+++... +..+.+-+-..+++..+.+- +.+.+.+.+.++.+.+. |+
T Consensus 111 ~-----Gl~~~l~-TnG~~~~~~~~~l~~~------~D~v~~DlK~~~~~~y~~~t-g~~~~~vl~~~~~l~~~--g~~v 175 (260)
T COG1180 111 R-----GLHVALD-TNGFLPPEALEELLPL------LDAVLLDLKAFDDELYRKLT-GADNEPVLENLELLADL--GVHV 175 (260)
T ss_pred C-----CCcEEEE-cCCCCCHHHHHHHHhh------cCeEEEeeccCChHHHHHHh-CCCcHHHHHHHHHHHcC--CCeE
Confidence 3 2233343 2221111222223332 35667778888888655443 33448999999999997 75
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhcCC-CeEEEEec
Q 013195 347 QIATDIICGFPGETDEDFNQTVNLIKEYKF-PQVHISQF 384 (448)
Q Consensus 347 ~i~~~~IvG~PgET~ed~~~tl~~i~~l~~-~~v~i~~~ 384 (448)
.+++-+|=|+ .++++++++.++|+.++.. ..+++.+|
T Consensus 176 e~r~lviPg~-~d~~e~i~~i~~~i~~~~~~~p~~~l~f 213 (260)
T COG1180 176 EIRTLVIPGY-NDDEEEIRELAEFIADLGPEIPIHLLRF 213 (260)
T ss_pred EEEEEEECCC-CCCHHHHHHHHHHHHhcCCcccEEEecc
Confidence 4555556555 5789999999999998532 23444444
No 148
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=98.01 E-value=3.4e-05 Score=66.07 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=51.9
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCC--CCEEEEccccccchhh--hcCCccE-EEcCCchhHHHHHHHHHhcC
Q 013195 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCVPQGSRDL--KELEGVS-IVGVQQIDRVVEVVEETLKG 168 (448)
Q Consensus 94 ~~aDvv~intctv~~~a~~~~~~~i~~~~~~~--~~vVvgGc~a~~~~e~--~~~~~d~-vvg~~~~~~i~~~l~~~~~g 168 (448)
.++|+|.+ ||.+.+. ..+..+++.+|+.+ .+||+||.|++..|+. .....|. +.|+++ ..++++++....|
T Consensus 38 ~~pdiv~~-S~~~~~~--~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE-~~~~~l~~~l~~g 113 (127)
T cd02068 38 LKPDVVGI-SLMTSAI--YEALELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGE-ETFLKLLEELEEG 113 (127)
T ss_pred cCCCEEEE-eeccccH--HHHHHHHHHHHHHCCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcH-HHHHHHHHHHHcC
Confidence 67999999 6665543 25566677776654 7899999999999874 3345686 556664 7899999887655
Q ss_pred C
Q 013195 169 H 169 (448)
Q Consensus 169 ~ 169 (448)
.
T Consensus 114 ~ 114 (127)
T cd02068 114 E 114 (127)
T ss_pred C
Confidence 3
No 149
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=97.98 E-value=0.00011 Score=71.37 Aligned_cols=169 Identities=17% Similarity=0.163 Sum_probs=115.4
Q ss_pred cccCHHHHHHHHHHHHHCCC----cEEEEEecCCCCCCCCCCCC-HHHHHHHHHHhCC-----------C--CCcceEEE
Q 013195 219 GSYTVESLVGRVRTVIADGV----KEVWLSSEDTGAYGRDIGVN-LPILLNAIVAELP-----------P--DGSTMLRI 280 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~----~ei~~~~~~~~~yg~d~~~~-l~~ll~~l~~~~~-----------~--~~~~~iri 280 (448)
|.-|-++-...+++|...|. -|+++.|..+.+...+.... +..|-.+|..... . ..-..+.+
T Consensus 148 RYdP~~QaR~Rv~QLk~LGHsvDKVE~i~MGGTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTI 227 (554)
T KOG2535|consen 148 RYDPYLQARGRVEQLKQLGHSVDKVEFIVMGGTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITI 227 (554)
T ss_pred hcCHHHHHHHHHHHHHHhCCccceeEEEEecceeecChHHHHHHHHHHHHHHhcCCCccCHHHHHHhhhhccceeeeEEe
Confidence 33456777777888887653 35677787766654332111 1112222211100 0 01123445
Q ss_pred eecCCcChh-HHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCC
Q 013195 281 GMTNPPFIL-EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359 (448)
Q Consensus 281 ~~~~p~~i~-~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgE 359 (448)
. +.|+.-. .+ +.+|+..+ |.++.||+||.-+++-+.-|||||+..+-+.+..++++ |..+.+.+|-.+|.-
T Consensus 228 E-TRPDyC~~~H---l~~ML~YG--CTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDa--G~KvV~HMMPdLPNV 299 (554)
T KOG2535|consen 228 E-TRPDYCLKRH---LSDMLTYG--CTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDA--GFKVVAHMMPDLPNV 299 (554)
T ss_pred e-cCcccchhhh---HHHHHhcC--CceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhcc--CceeehhhCCCCCCC
Confidence 4 4676543 34 44555443 89999999999999999999999999999999999999 999999999999985
Q ss_pred C-HHHHHHHHHHHHhc--CCCeEEEEeceeCCCCcccCC
Q 013195 360 T-DEDFNQTVNLIKEY--KFPQVHISQFYPRPGTPAARM 395 (448)
Q Consensus 360 T-~ed~~~tl~~i~~l--~~~~v~i~~~~p~pGT~~~~~ 395 (448)
. +.|+++-.++.+.- +.|.+.+++--...||-+|.+
T Consensus 300 g~eRDieqF~E~FenP~FR~DGLKiYPTLVIrGTGLyEL 338 (554)
T KOG2535|consen 300 GMERDIEQFKEYFENPAFRPDGLKIYPTLVIRGTGLYEL 338 (554)
T ss_pred chhhhHHHHHHHhcCcCcCCCcceecceEEEecccHHHH
Confidence 5 45677777777654 457888888888999988764
No 150
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=97.96 E-value=0.00025 Score=71.06 Aligned_cols=172 Identities=12% Similarity=0.114 Sum_probs=118.8
Q ss_pred ccceeeCccCCCccccCHHHHHHHHHHHHHCCCc---EEEEE-ecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEe
Q 013195 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK---EVWLS-SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281 (448)
Q Consensus 206 CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~---ei~~~-~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~ 281 (448)
|.||.....--.-...++..|.+|...-.-.++. .+... +.+++.| .++.++.+.....+ ...++|++
T Consensus 44 C~~cy~~v~~~~~~~~~~~~v~~e~~~~lg~~~e~~~~~~~~~~~d~~c~-----p~le~~~~r~~~~~---~d~~~rL~ 115 (414)
T COG1625 44 CDDCYLSVNELDTGFIPPLMVEKEPDEDLGLEFEEVLGAKQCGNGDTFCY-----PDLEPRGRRARLYY---KDDDIRLS 115 (414)
T ss_pred ccceeeEEecccCCCCCHhHhhcccccccccccccccceeecCCCCcccC-----cchhhhhhHHHhhc---CCccceee
Confidence 9999765322112556778888887531111111 12221 2233333 45677777777654 25678888
Q ss_pred ecCCcChh--HHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCC
Q 013195 282 MTNPPFIL--EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359 (448)
Q Consensus 282 ~~~p~~i~--~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgE 359 (448)
++....++ ...+. +... + ...+.+.+.|.++++.+.|-|....++..+.+.++.++ ++.+.+++++ .||=
T Consensus 116 ~tsG~~~~lt~~~~~---i~~~-g-vdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~--~~~v~a~iVl-~PGv 187 (414)
T COG1625 116 FTSGSGFTLTNRAER---IIDA-G-VDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAER--CIEVHAQIVL-CPGV 187 (414)
T ss_pred eeeccceeccchHHH---HHHc-C-CCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHh--hhheeeEEEE-cCCc
Confidence 77654443 33222 3332 3 57899999999999999999999999999999999999 9999999887 5887
Q ss_pred C-HHHHHHHHHHHHhcCCCeEEEEeceeCCCCccc
Q 013195 360 T-DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393 (448)
Q Consensus 360 T-~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~ 393 (448)
+ -+++.+|++-+.+++...+.++.+.|.=.|...
T Consensus 188 Ndge~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~n 222 (414)
T COG1625 188 NDGEELEKTLEDLEEWGAHEVILMRVVPVGLTRYN 222 (414)
T ss_pred CcHHHHHHHHHHHHHhCcCceeEEEeecceeeecC
Confidence 7 899999999999999888887766666555443
No 151
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=97.65 E-value=0.0016 Score=62.33 Aligned_cols=177 Identities=19% Similarity=0.212 Sum_probs=102.0
Q ss_pred CCCCCCccceeeCcc--CCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcce
Q 013195 200 VGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTM 277 (448)
Q Consensus 200 rGC~~~CsFC~~~~~--rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~ 277 (448)
.||+++|-||+.... .|.-+...++++.+-+..+.+.|++.|.|+|+|... .+..+++.+......-...|
T Consensus 126 sgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Ptp-------~lp~Ile~l~~~~~~iPvvw 198 (335)
T COG1313 126 SGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPTP-------HLPFILEALRYASENIPVVW 198 (335)
T ss_pred cCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCCC-------chHHHHHHHHHHhcCCCEEE
Confidence 599999999975432 234456778998888888889999999999866433 34555555543221002334
Q ss_pred EEEeecCCcChhHHHHHHHHHHhCCCcccccccc-cCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCEEEEEEEEe
Q 013195 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVP-VQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIATDIICG 355 (448)
Q Consensus 278 iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~ig-lES~s~~vLk~m~R-~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG 355 (448)
..-+|.. .+ .++++.. +.-|.+| +-=|+++--.+..+ +.-++-..+.+..+.+.+.|+-+.--++
T Consensus 199 NSnmY~s-----~E---~l~lL~g---vVDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRHLVl-- 265 (335)
T COG1313 199 NSNMYMS-----EE---TLKLLDG---VVDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVGGLIIRHLVL-- 265 (335)
T ss_pred ecCCccC-----HH---HHHHhhc---cceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcCceEEEEEec--
Confidence 3333322 22 2333321 1122222 34457766555544 3445666677777777655565554444
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEecee-CCCCcccCCCC
Q 013195 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYP-RPGTPAARMKK 397 (448)
Q Consensus 356 ~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p-~pGT~~~~~~~ 397 (448)
||.-+.=-..-++|+.+.-.+.+.++.+.. +|--.++++|.
T Consensus 266 -PghlecCTkpI~~wiae~~g~~~~vNiM~QY~P~ykA~eype 307 (335)
T COG1313 266 -PGHLECCTKPILRWIAENLGNDVRVNIMFQYRPEYKAEEYPE 307 (335)
T ss_pred -CCchhhccHHHHHHHHHhCCCCeeEEehhhccchhhhhhchh
Confidence 664444355678999888665565654432 34455556653
No 152
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=97.61 E-value=0.00033 Score=59.12 Aligned_cols=99 Identities=16% Similarity=0.172 Sum_probs=64.6
Q ss_pred EEEEecCCccChhHHHHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcC--
Q 013195 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA-- 124 (448)
Q Consensus 61 ~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~-- 124 (448)
+.+.+.+=..-..-..++++.|++.||++..- ..++|+|++ ||+.+. ....+.++++.+|+.
T Consensus 3 v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~i-S~~~~~-~~~~~~~l~~~~k~~~p 80 (121)
T PF02310_consen 3 VVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGI-SVSMTP-NLPEAKRLARAIKERNP 80 (121)
T ss_dssp EEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEE-EESSST-HHHHHHHHHHHHHTTCT
T ss_pred EEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEE-EccCcC-cHHHHHHHHHHHHhcCC
Confidence 33444444444556778888888888887421 357899999 443332 334567777777765
Q ss_pred CCCEEEEccccccchhh--hc-CCcc-EEEcCCchhHHHHHH
Q 013195 125 KKPLVVAGCVPQGSRDL--KE-LEGV-SIVGVQQIDRVVEVV 162 (448)
Q Consensus 125 ~~~vVvgGc~a~~~~e~--~~-~~~d-~vvg~~~~~~i~~~l 162 (448)
+.+||+||.+++..|+. .. ...| .++|+++ ..+++++
T Consensus 81 ~~~iv~GG~~~t~~~~~~l~~~~~~D~vv~GegE-~~~~~l~ 121 (121)
T PF02310_consen 81 NIPIVVGGPHATADPEEILREYPGIDYVVRGEGE-EAFPELL 121 (121)
T ss_dssp TSEEEEEESSSGHHHHHHHHHHHTSEEEEEETTS-SHHHH--
T ss_pred CCEEEEECCchhcChHHHhccCcCcceecCCChH-HhhcccC
Confidence 46899999999999973 33 4457 4778887 4566553
No 153
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=97.37 E-value=0.0026 Score=54.92 Aligned_cols=101 Identities=15% Similarity=0.250 Sum_probs=72.8
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcC
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~ 124 (448)
.++.+-|.|...--.-...++..|+..||++++. .++||+|+| |+......+.+..+++++++.
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~i--Ssl~~~~~~~~~~~~~~L~~~ 80 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGV--SSLAGGHLTLVPALRKELDKL 80 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEE--cCchhhhHHHHHHHHHHHHhc
Confidence 4788888888888888889999999999999775 578999999 444444445577777777766
Q ss_pred C---CCEEEEccccccc-hhhhcCCccEEEcCCchhHHHHHHH
Q 013195 125 K---KPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVE 163 (448)
Q Consensus 125 ~---~~vVvgGc~a~~~-~e~~~~~~d~vvg~~~~~~i~~~l~ 163 (448)
+ .+|++||-.+... .++.++..|.+++.+. .+.+++.
T Consensus 81 g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt--~~~~i~~ 121 (132)
T TIGR00640 81 GRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGT--PIPESAI 121 (132)
T ss_pred CCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCC--CHHHHHH
Confidence 4 4788999766432 2355666788887765 3444443
No 154
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.33 E-value=0.0061 Score=62.34 Aligned_cols=108 Identities=14% Similarity=0.209 Sum_probs=78.9
Q ss_pred ccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCH-HHHHHHHHHHHhcC---CCeEE
Q 013195 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD-EDFNQTVNLIKEYK---FPQVH 380 (448)
Q Consensus 305 ~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~-ed~~~tl~~i~~l~---~~~v~ 380 (448)
..-+.+.+.|.+++..+.|-+.-..+++.+.++++.++ ||.+.+.+++ .||=++ +++++|++.+.+++ ...+.
T Consensus 139 lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~--~I~~h~qiVl-cPGiNDg~~L~~Ti~dL~~~~~~~~P~v~ 215 (433)
T TIGR03279 139 LSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQER--RLQLHAQVVV-CPGINDGKHLERTLRDLAQFHDGDWPTVL 215 (433)
T ss_pred CCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHc--CCeEEEEEEE-cCCcCCHHHHHHHHHHHHhhcccCCCcee
Confidence 45788999999999998887777899999999999999 9999988877 588776 79999999999982 22333
Q ss_pred EEeceeCCCCcc----cCCCCCCHHHHHHHHHHHHHHHH
Q 013195 381 ISQFYPRPGTPA----ARMKKVPSAVVKKRSRELTSVFE 415 (448)
Q Consensus 381 i~~~~p~pGT~~----~~~~~v~~~~~~~R~~~l~~~~~ 415 (448)
--...|.==|.. +.+.....+.+.+-.+.+..+++
T Consensus 216 S~avVPVGlTk~R~~l~~l~~~~~e~A~~vi~~ie~~q~ 254 (433)
T TIGR03279 216 SVAVVPVGLTRFRPEEDELTPVTPECARRVIAQVEALQT 254 (433)
T ss_pred EEEEEccccccCCCCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 334445444443 23335666666655555555554
No 155
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=97.30 E-value=0.013 Score=54.86 Aligned_cols=153 Identities=13% Similarity=0.060 Sum_probs=102.6
Q ss_pred cccCHHHHHHHHHHHHH---CCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHH
Q 013195 219 GSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~---~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el 295 (448)
+..++++++++++.... .+-.-|.|+|.+...+. .-+.++++++.+. + ....+. ++...-.+. +
T Consensus 17 ~~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~----~fl~~l~~~~k~~----g-i~~~le-TnG~~~~~~---~ 83 (213)
T PRK10076 17 RDITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQA----EFATRFLQRLRLW----G-VSCAIE-TAGDAPASK---L 83 (213)
T ss_pred cccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCH----HHHHHHHHHHHHc----C-CCEEEE-CCCCCCHHH---H
Confidence 44789999999876433 23356888886655441 1235677776542 2 234444 222111222 3
Q ss_pred HHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 013195 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (448)
Q Consensus 296 ~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (448)
..++.. +..+.+-+-+.+++..+.+. |.+.+.+.+.++.+.+.-..+.+.+-+|=|+ ..+++++++..+|+.+++
T Consensus 84 ~~l~~~---~D~~l~DiK~~d~~~~~~~t-G~~~~~il~nl~~l~~~g~~v~iR~~vIPg~-nd~~e~i~~ia~~l~~l~ 158 (213)
T PRK10076 84 LPLAKL---CDEVLFDLKIMDATQARDVV-KMNLPRVLENLRLLVSEGVNVIPRLPLIPGF-TLSRENMQQALDVLIPLG 158 (213)
T ss_pred HHHHHh---cCEEEEeeccCCHHHHHHHH-CCCHHHHHHHHHHHHhCCCcEEEEEEEECCC-CCCHHHHHHHHHHHHHcC
Confidence 333322 45666778888888776664 3567899999999999822367788888776 578999999999999998
Q ss_pred CCeEEEEeceeCCC
Q 013195 376 FPQVHISQFYPRPG 389 (448)
Q Consensus 376 ~~~v~i~~~~p~pG 389 (448)
+..+++.+|.|+--
T Consensus 159 ~~~~~llpyh~~g~ 172 (213)
T PRK10076 159 IKQIHLLPFHQYGE 172 (213)
T ss_pred CceEEEecCCccch
Confidence 88889899988643
No 156
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00063 Score=63.63 Aligned_cols=63 Identities=19% Similarity=0.255 Sum_probs=47.1
Q ss_pred CCCCCCccceeeCccCC-----CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHH
Q 013195 200 VGCLGACTYCKTKHARG-----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (448)
Q Consensus 200 rGC~~~CsFC~~~~~rg-----~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~ 268 (448)
-|||.+|.||..+.++. .+...+.++|+++++.+. .+.+.|.|+|++.... ..+..|++.+.+
T Consensus 30 ~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~lTGGEP~~~-----~~l~~Ll~~l~~ 97 (212)
T COG0602 30 AGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSLTGGEPLLQ-----PNLLELLELLKR 97 (212)
T ss_pred CCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-CCcceEEEeCCcCCCc-----ccHHHHHHHHHh
Confidence 39999999999876543 467778999999998753 2445899999776322 357888888875
No 157
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=97.01 E-value=0.0015 Score=57.48 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=49.4
Q ss_pred EEEEEeCCCCCCCccceeeCccCCC--ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHH
Q 013195 193 VEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg~--~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~ 268 (448)
.+.+-.-.|||.+|.||..+..... .+..+.++++++|+.+. ..+..|.|+|++ ..+ ..+.++++.+.+
T Consensus 16 ~~~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~-~~~~gVt~SGGE-l~~-----~~l~~ll~~lk~ 86 (147)
T TIGR02826 16 YSLAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYR-SLISCVLFLGGE-WNR-----EALLSLLKIFKE 86 (147)
T ss_pred EEEEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhC-CCCCEEEEechh-cCH-----HHHHHHHHHHHH
Confidence 3445566699999999998865322 34678999999988764 345789999977 221 246788888765
No 158
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=96.96 E-value=0.0019 Score=55.76 Aligned_cols=72 Identities=18% Similarity=0.291 Sum_probs=39.7
Q ss_pred EEeCCCCCCCccceeeCccCC-CccccCHHHHHHHH-HHHHHCCCcEEEEEecCCCCC-CCCCCCCHHHHHHHHHHhC
Q 013195 196 LPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRV-RTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAEL 270 (448)
Q Consensus 196 i~isrGC~~~CsFC~~~~~rg-~~rsr~~e~Iv~ei-~~l~~~G~~ei~~~~~~~~~y-g~d~~~~l~~ll~~l~~~~ 270 (448)
+..+.||+.+|.||..+.... .....-..+.++++ +.+.+.+...|.|+|.+...+ .. ..+.++++.+.+..
T Consensus 9 ~~~t~~Cnl~C~yC~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~GGEPll~~~~---~~l~~i~~~~k~~~ 83 (139)
T PF13353_consen 9 VLFTNGCNLRCKYCFNSEIWKFKRGKELSEEIIEEIIEELKNYGIKGIVLTGGEPLLHENY---DELLEILKYIKEKF 83 (139)
T ss_dssp EEEEC--SB--TT-TTCCCS-TT-SEEC-HHHHHHHCHHHCCCCCCEEEEECSTGGGHHSH---HHHHHHHHHHHHTT
T ss_pred EEEcCcccccCcCcCCcccCcccccccccchhhhhhhhHHhcCCceEEEEcCCCeeeeccH---hHHHHHHHHHHHhC
Confidence 344788999999997665443 12222235555555 444456899999998766551 11 34678888887653
No 159
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=96.93 E-value=0.04 Score=48.95 Aligned_cols=140 Identities=16% Similarity=0.229 Sum_probs=83.4
Q ss_pred CCCCCCCccceeeCccCC----CccccCHHHHHHHHHHHHH-CCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCC
Q 013195 199 NVGCLGACTYCKTKHARG----HLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273 (448)
Q Consensus 199 srGC~~~CsFC~~~~~rg----~~rsr~~e~Iv~ei~~l~~-~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~ 273 (448)
+-||+..|.||-...-+- .....+|++|.+.+.++.+ .|..-+.+.|.... .++ ..+.++++-+ .
T Consensus 48 ~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP~-l~~---EHvlevIeLl----~-- 117 (228)
T COG5014 48 TVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAEPI-LGR---EHVLEVIELL----V-- 117 (228)
T ss_pred ccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCCcc-ccH---HHHHHHHHhc----c--
Confidence 349999999996532111 2456789999999877765 58888888775432 232 1233333332 2
Q ss_pred CcceEEEeecCCcCh--hHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCC---HHHHHHHHHHHHHhCCCCEE
Q 013195 274 GSTMLRIGMTNPPFI--LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT---LSDFRTVVDTLIELVPGMQI 348 (448)
Q Consensus 274 ~~~~iri~~~~p~~i--~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t---~e~~~~~i~~ir~~~pgi~i 348 (448)
+ ..+-+. +|...+ +..+ ..++.++.++ .+.+.+--.+++...++.- .+ ..--.++++.+.+. |+.+
T Consensus 118 ~-~tFvlE-TNG~~~g~drsl--v~el~nr~nv--~vRVsvKG~dpesF~kIT~-asp~~F~~QL~aLr~L~~~--g~rf 188 (228)
T COG5014 118 N-NTFVLE-TNGLMFGFDRSL--VDELVNRLNV--LVRVSVKGWDPESFEKITG-ASPEYFRYQLKALRHLHGK--GHRF 188 (228)
T ss_pred C-ceEEEE-eCCeEEecCHHH--HHHHhcCCce--EEEEEecCCCHHHHHHHhc-CChHHHHHHHHHHHHHHhc--Ccee
Confidence 1 122222 333322 2332 3344455654 5667788888888866531 22 34445666666666 8889
Q ss_pred EEEEEEeCC
Q 013195 349 ATDIICGFP 357 (448)
Q Consensus 349 ~~~~IvG~P 357 (448)
..-++.+|-
T Consensus 189 ~pA~~~~f~ 197 (228)
T COG5014 189 WPAVVYDFF 197 (228)
T ss_pred eehhhhccc
Confidence 999999984
No 160
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=96.74 E-value=0.0074 Score=50.88 Aligned_cols=78 Identities=23% Similarity=0.318 Sum_probs=55.7
Q ss_pred HHHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcC---CCCEEEEcccccc
Q 013195 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA---KKPLVVAGCVPQG 137 (448)
Q Consensus 75 se~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~---~~~vVvgGc~a~~ 137 (448)
-..++..|+..||++..- ..++|+|+| ||+.+... ..+.++++.+|+. +.+|++||-+++.
T Consensus 16 ~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~i-S~~~~~~~-~~~~~~i~~l~~~~~~~~~i~vGG~~~~~ 93 (119)
T cd02067 16 KNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGL-SGLLTTHM-TLMKEVIEELKEAGLDDIPVLVGGAIVTR 93 (119)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-eccccccH-HHHHHHHHHHHHcCCCCCeEEEECCCCCh
Confidence 346778888899988552 467899999 66655443 4566667766655 4568999999988
Q ss_pred chh-hhcCCccEEEcCCc
Q 013195 138 SRD-LKELEGVSIVGVQQ 154 (448)
Q Consensus 138 ~~e-~~~~~~d~vvg~~~ 154 (448)
.++ ..+...|.++....
T Consensus 94 ~~~~~~~~G~D~~~~~~~ 111 (119)
T cd02067 94 DFKFLKEIGVDAYFGPAT 111 (119)
T ss_pred hHHHHHHcCCeEEECCHH
Confidence 776 34666788887654
No 161
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=96.73 E-value=0.0034 Score=53.05 Aligned_cols=81 Identities=17% Similarity=0.228 Sum_probs=52.5
Q ss_pred HHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhc--C-CCCEEEEccccccc
Q 013195 76 EYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--A-KKPLVVAGCVPQGS 138 (448)
Q Consensus 76 e~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~--~-~~~vVvgGc~a~~~ 138 (448)
..++..|++.||++... ..++|+|.+ ||+..... ...+.+.++++ + +.+|++||.+++..
T Consensus 17 ~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~~pdiV~i-S~~~~~~~--~~~~~~~~~~~~~p~~~~ivvGG~~~t~~ 93 (125)
T cd02065 17 NIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEEDADVVGL-SALSTTHM--EAMKLVIEALKELGIDIPVVVGGAHPTAD 93 (125)
T ss_pred HHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEE-ecchHhHH--HHHHHHHHHHHhcCCCCeEEEeCCcCCcc
Confidence 45667788888877532 357899999 66665543 22333333332 2 57899999999999
Q ss_pred hhhhcCCcc-EEEcCCchhHHHHHH
Q 013195 139 RDLKELEGV-SIVGVQQIDRVVEVV 162 (448)
Q Consensus 139 ~e~~~~~~d-~vvg~~~~~~i~~~l 162 (448)
|+. ...| .++|+++ ..+++++
T Consensus 94 ~~~--~~~d~~~~Ge~e-~~~~~l~ 115 (125)
T cd02065 94 PEE--PKVDAVVIGEGE-YAGPALL 115 (125)
T ss_pred ccc--cccceeeeCCeE-EEccccc
Confidence 876 3456 4678776 3455554
No 162
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.69 E-value=0.037 Score=48.10 Aligned_cols=105 Identities=16% Similarity=0.257 Sum_probs=71.1
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcC
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~ 124 (448)
+++-+-|.|.-....--..++..|+++||+++.- ..+||+|.+ ||..+. ....+.++++++++.
T Consensus 4 ~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~l-S~~~~~-~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 4 KTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILV-SSLYGH-GEIDCRGLREKCIEA 81 (137)
T ss_pred CEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-cCcccc-CHHHHHHHHHHHHhc
Confidence 3566666666666677778889999999999764 567999999 555543 345567777777766
Q ss_pred ---CCCEEEEcccccc---ch----hhhcCCccEEEcCC-chhHHHHHHHHH
Q 013195 125 ---KKPLVVAGCVPQG---SR----DLKELEGVSIVGVQ-QIDRVVEVVEET 165 (448)
Q Consensus 125 ---~~~vVvgGc~a~~---~~----e~~~~~~d~vvg~~-~~~~i~~~l~~~ 165 (448)
+.+|++||-.+.. .+ ++.++..|.|++.+ ..+.+.+.|.+.
T Consensus 82 ~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~ 133 (137)
T PRK02261 82 GLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKD 133 (137)
T ss_pred CCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHH
Confidence 4579999976432 22 23455567788744 455666666543
No 163
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=96.59 E-value=0.0061 Score=51.21 Aligned_cols=53 Identities=19% Similarity=0.342 Sum_probs=30.4
Q ss_pred eCCCCCCCccceeeCccCC--CccccCHHHHHHHHHHHHHCCC--cEEEEEecCCCC
Q 013195 198 INVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGV--KEVWLSSEDTGA 250 (448)
Q Consensus 198 isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~ei~~l~~~G~--~ei~~~~~~~~~ 250 (448)
.+.+|+.+|.||....... .....+.+.+.+.++.+...+. ..|.|+|++...
T Consensus 4 ~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEPll 60 (119)
T PF13394_consen 4 RTSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTGGEPLL 60 (119)
T ss_dssp --S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHTT----EEEEESSSGGG
T ss_pred ccCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhcCCceEEEEEECCCCcc
Confidence 4789999999999754332 3566678888888888877766 568999866553
No 164
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=96.41 E-value=0.035 Score=54.19 Aligned_cols=163 Identities=16% Similarity=0.235 Sum_probs=100.6
Q ss_pred EEEEeCCCCCCCccceeeCccC-CCc-------cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHH
Q 013195 194 EILPINVGCLGACTYCKTKHAR-GHL-------GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 265 (448)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~~r-g~~-------rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~ 265 (448)
..|.++-=||.+|-||-+...+ |+- --.+.++|++|++...+.| +-++|.|...- -.+..+.++.
T Consensus 30 lVlFvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~G---asiTGGdPl~~----ieR~~~~ir~ 102 (353)
T COG2108 30 LVLFVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALG---ASITGGDPLLE----IERTVEYIRL 102 (353)
T ss_pred eEEEEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhcccc---ccccCCChHHH----HHHHHHHHHH
Confidence 3567888899999999876433 331 1234688888887665555 44666443221 1245677788
Q ss_pred HHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCc-ccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q 013195 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV-YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344 (448)
Q Consensus 266 l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~-~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~p 344 (448)
+++.+. ...-+.+ |+++...+++. +.+|. .+++ =-++|.+ ..+. ...+.+.+.+..+++.
T Consensus 103 LK~efG--~~fHiHL-YT~g~~~~~e~--l~~L~-eAGLDEIRfHp~--~~~~---------~~~e~~i~~l~~A~~~-- 163 (353)
T COG2108 103 LKDEFG--EDFHIHL-YTTGILATEEA--LKALA-EAGLDEIRFHPP--RPGS---------KSSEKYIENLKIAKKY-- 163 (353)
T ss_pred HHHhhc--cceeEEE-eeccccCCHHH--HHHHH-hCCCCeEEecCC--Cccc---------cccHHHHHHHHHHHHh--
Confidence 877664 3344554 46666556543 44444 3332 1356665 2111 1346789999999998
Q ss_pred CCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEec
Q 013195 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384 (448)
Q Consensus 345 gi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~ 384 (448)
|+.+..- |=..||+ ++.+.+.++++.+.+.+.++++.+
T Consensus 164 g~dvG~E-iPaipg~-e~~i~e~~~~~~~~~~~FlNiNEL 201 (353)
T COG2108 164 GMDVGVE-IPAIPGE-EEAILEFAKALDENGLDFLNINEL 201 (353)
T ss_pred Cccceee-cCCCcch-HHHHHHHHHHHHhcccceeeeeee
Confidence 7655433 3445664 455678899999999888888764
No 165
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=96.38 E-value=0.024 Score=48.54 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=55.7
Q ss_pred HHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcCC---CCEEEEcccc---
Q 013195 76 EYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KPLVVAGCVP--- 135 (448)
Q Consensus 76 e~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~---~~vVvgGc~a--- 135 (448)
..++..|+++||++++- .++||+|.+++-.-+ +...+.++++.+++.| .+|++||-.+
T Consensus 17 niv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~--~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~ 94 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGH--GEIDCKGLREKCDEAGLKDILLYVGGNLVVGK 94 (128)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccC--CHHHHHHHHHHHHHCCCCCCeEEEECCCCCCh
Confidence 46788999999999764 568999999553332 2334555666666554 5799999743
Q ss_pred ccch----hhhcCCccEEEcCCchhHHHHHHHH
Q 013195 136 QGSR----DLKELEGVSIVGVQQIDRVVEVVEE 164 (448)
Q Consensus 136 ~~~~----e~~~~~~d~vvg~~~~~~i~~~l~~ 164 (448)
+..+ ++.++..|.++|++. .+.+++.+
T Consensus 95 ~d~~~~~~~L~~~Gv~~vf~pgt--~~~~i~~~ 125 (128)
T cd02072 95 QDFEDVEKRFKEMGFDRVFAPGT--PPEEAIAD 125 (128)
T ss_pred hhhHHHHHHHHHcCCCEEECcCC--CHHHHHHH
Confidence 2222 244566788998875 45555544
No 166
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=96.06 E-value=0.076 Score=46.08 Aligned_cols=95 Identities=19% Similarity=0.355 Sum_probs=68.8
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~ 123 (448)
..+|-+-++|-.--..-...++..|++.||++... .+++|+|+| |+.......-+-.+++.+++
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgv--Ssl~g~h~~l~~~lve~lre 89 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGV--SSLDGGHLTLVPGLVEALRE 89 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEE--EeccchHHHHHHHHHHHHHH
Confidence 46788888885555566778999999999998654 578999999 44444444556677788888
Q ss_pred CCC---CEEEEccccccc-hhhhcCCccEEEcCCc
Q 013195 124 AKK---PLVVAGCVPQGS-RDLKELEGVSIVGVQQ 154 (448)
Q Consensus 124 ~~~---~vVvgGc~a~~~-~e~~~~~~d~vvg~~~ 154 (448)
.|. .|++||..|... ++++++..|.+++++.
T Consensus 90 ~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt 124 (143)
T COG2185 90 AGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGT 124 (143)
T ss_pred hCCcceEEeecCccCchhHHHHHHhCcceeeCCCC
Confidence 774 468889888654 3356666788887754
No 167
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=96.02 E-value=0.42 Score=45.88 Aligned_cols=150 Identities=14% Similarity=0.132 Sum_probs=100.8
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (448)
...++.++.++-++.+.+.|+..|.+.+......- .......++++.+.+..+ ..++.. ..... . +.+..
T Consensus 13 ~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~---~~~~~~-l~~~~--~---~~i~~ 82 (265)
T cd03174 13 GATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVP---NVKLQA-LVRNR--E---KGIER 82 (265)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccC---CcEEEE-EccCc--h---hhHHH
Confidence 45668999999999999999999999775433111 112356788888876532 223322 12221 1 12333
Q ss_pred HHhCCCcccccccccCCCCH-HHHHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCC-CCCHHHHHHHHHHHHh
Q 013195 298 VLRHPCVYSFLHVPVQSGSD-AVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFP-GETDEDFNQTVNLIKE 373 (448)
Q Consensus 298 l~~~~~~~~~l~iglES~s~-~vLk~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~P-gET~ed~~~tl~~i~~ 373 (448)
+.+.+ ...+++.+ ++|+ ......+|+ ...+...+.++.+++. |+.+..+++.-+. ..+.+.+.+.++.+.+
T Consensus 83 a~~~g--~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~ 157 (265)
T cd03174 83 ALEAG--VDEVRIFD-SASETHSRKNLNKSREEDLENAEEAIEAAKEA--GLEVEGSLEDAFGCKTDPEYVLEVAKALEE 157 (265)
T ss_pred HHhCC--cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 33332 46788877 4454 223444555 3678899999999999 9999988876663 4899999999999999
Q ss_pred cCCCeEEEE
Q 013195 374 YKFPQVHIS 382 (448)
Q Consensus 374 l~~~~v~i~ 382 (448)
++.+.+.+.
T Consensus 158 ~g~~~i~l~ 166 (265)
T cd03174 158 AGADEISLK 166 (265)
T ss_pred cCCCEEEec
Confidence 998877643
No 168
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=96.01 E-value=0.16 Score=43.85 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=57.7
Q ss_pred HHHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcCC---CCEEEEccc--c
Q 013195 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KPLVVAGCV--P 135 (448)
Q Consensus 75 se~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~---~~vVvgGc~--a 135 (448)
-..++..|+++||++++- .++||+|.+++-.- .+...+.++++++++.| .+|++||-. +
T Consensus 18 k~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~--~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~ 95 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLYG--HGEIDCKGLRQKCDEAGLEGILLYVGGNLVVG 95 (134)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccc--cCHHHHHHHHHHHHHCCCCCCEEEecCCcCcC
Confidence 467888999999999874 57899999965443 33445666777777665 467799953 3
Q ss_pred cc-ch----hhhcCCccEEEcCCc-hhHHHHHHHH
Q 013195 136 QG-SR----DLKELEGVSIVGVQQ-IDRVVEVVEE 164 (448)
Q Consensus 136 ~~-~~----e~~~~~~d~vvg~~~-~~~i~~~l~~ 164 (448)
.. .+ ++.++..|.++|.+. .+.+.+.|..
T Consensus 96 ~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~ 130 (134)
T TIGR01501 96 KQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKK 130 (134)
T ss_pred hhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHH
Confidence 22 22 144566788888764 3445555443
No 169
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=95.58 E-value=0.2 Score=42.42 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=51.5
Q ss_pred HHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcCC---CCEEEEccccccc
Q 013195 76 EYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KPLVVAGCVPQGS 138 (448)
Q Consensus 76 e~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~---~~vVvgGc~a~~~ 138 (448)
..++..|+..||+++.- ..+||+|+| ||+- ......+.++++.+++.+ .++++||-.+...
T Consensus 17 ~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~i-S~~~-~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~ 94 (122)
T cd02071 17 KVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGL-SSLS-GGHMTLFPEVIELLRELGAGDILVVGGGIIPPED 94 (122)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-cccc-hhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHH
Confidence 45667788899998654 467999999 4443 344556788888887773 4688888544322
Q ss_pred h-hhhcCCccEEEcCCc
Q 013195 139 R-DLKELEGVSIVGVQQ 154 (448)
Q Consensus 139 ~-e~~~~~~d~vvg~~~ 154 (448)
. ++.+...|.+++.+.
T Consensus 95 ~~~~~~~G~d~~~~~~~ 111 (122)
T cd02071 95 YELLKEMGVAEIFGPGT 111 (122)
T ss_pred HHHHHHCCCCEEECCCC
Confidence 2 234555688887765
No 170
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=95.43 E-value=0.055 Score=47.96 Aligned_cols=67 Identities=21% Similarity=0.195 Sum_probs=42.1
Q ss_pred CCCCCCCccceeeCccCC--CccccC---HHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHh
Q 013195 199 NVGCLGACTYCKTKHARG--HLGSYT---VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (448)
Q Consensus 199 srGC~~~CsFC~~~~~rg--~~rsr~---~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~ 269 (448)
..|||.+|.||..|.... .-...+ ++++++++.... ....|.|+|.+...... ...+.++++.+.+.
T Consensus 22 ~~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~--~~~gVt~sGGEPllq~~--~~~l~~ll~~~k~~ 93 (154)
T TIGR02491 22 VAGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNP--LIDGLTLSGGDPLYPRN--VEELIELVKKIKAE 93 (154)
T ss_pred ECCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcC--CcCeEEEeChhhCCCCC--HHHHHHHHHHHHHh
Confidence 379999999999876542 124566 556665554321 35679999877665310 02466777777654
No 171
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=94.97 E-value=0.15 Score=45.18 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=37.0
Q ss_pred CCCCCCccceeeCccCCC--ccccC---HHHHHHHHHHHHHCCC--cEEEEEecCCCCCCCCCCCCHHHHHHHHHHhC
Q 013195 200 VGCLGACTYCKTKHARGH--LGSYT---VESLVGRVRTVIADGV--KEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (448)
Q Consensus 200 rGC~~~CsFC~~~~~rg~--~rsr~---~e~Iv~ei~~l~~~G~--~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~ 270 (448)
.|||.+|.||..+..... -+..+ .++|++++. ..+. ..|.|+|.+.... .. ...+.++++++.+..
T Consensus 24 ~GCnl~C~~C~n~~~~~~~~g~~~~~~~~~~il~~~~---~~~~~~~gvt~sGGEPl~~-~~-~~~l~~l~~~~k~~~ 96 (154)
T PRK11121 24 SGCVHQCPGCYNKSTWRLNSGHPFTKEMEDQIIADLN---DTRIKRQGLSLSGGDPLHP-QN-VPDILKLVQRVKAEC 96 (154)
T ss_pred CCCCCcCcCCCChhhccCCCCcccCHHHHHHHHHHHH---HhCCCCCcEEEECCCccch-hh-HHHHHHHHHHHHHHC
Confidence 899999999987754321 11123 334444433 3333 5688888765432 10 124556777776554
No 172
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=94.43 E-value=0.38 Score=53.06 Aligned_cols=102 Identities=16% Similarity=0.284 Sum_probs=70.6
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~ 123 (448)
..+|++-|+|...-..=...+...|+..||++... .++||+|+| |+-.....+.+..+++.+|+
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~a~ivvl--cs~d~~~~e~~~~l~~~Lk~ 659 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVENDVHVVGV--SSLAAGHKTLVPALIEALKK 659 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcCCCEEEE--eccchhhHHHHHHHHHHHHh
Confidence 35899999999876667788999999999998643 268999999 55443444456777888887
Q ss_pred CCC---CEEEEccccccchh-hhcCCccEEEcCCchhHHHHHHH
Q 013195 124 AKK---PLVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVE 163 (448)
Q Consensus 124 ~~~---~vVvgGc~a~~~~e-~~~~~~d~vvg~~~~~~i~~~l~ 163 (448)
.|. +|++||-.+....+ +.+...|.+++.+. .+.++|.
T Consensus 660 ~G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~--d~~~~L~ 701 (714)
T PRK09426 660 LGREDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGT--VIADAAI 701 (714)
T ss_pred cCCCCcEEEEeCCCChhhHHHHHhCCCCEEECCCC--CHHHHHH
Confidence 763 57888874433222 45566787776654 3444443
No 173
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=94.22 E-value=2.1 Score=43.13 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=89.9
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC--CCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~--~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el 295 (448)
-.+.+.++-++-++.|.+.|++.|....- ...+..+ .+..++++.+.. .. + ..+. .+-+ .. +.+
T Consensus 62 g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~---vspk~vPqmad~~ev~~~i~~-~~--~-~~~~--~l~~--n~---~di 127 (347)
T PLN02746 62 KNIVPTSVKVELIQRLVSSGLPVVEATSF---VSPKWVPQLADAKDVMAAVRN-LE--G-ARFP--VLTP--NL---KGF 127 (347)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCC---cCcccccccccHHHHHHHHHh-cc--C-Ccee--EEcC--CH---HHH
Confidence 45788999999999999999999987531 1111000 133566777754 22 2 2222 1222 11 223
Q ss_pred HHHHhCCCcccccccccCCCCHHHHH-hcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEE--EEeCCCCC---HHHHHHH
Q 013195 296 AEVLRHPCVYSFLHVPVQSGSDAVLS-AMNRE--YTLSDFRTVVDTLIELVPGMQIATDI--ICGFPGET---DEDFNQT 367 (448)
Q Consensus 296 ~~l~~~~~~~~~l~iglES~s~~vLk-~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~--IvG~PgET---~ed~~~t 367 (448)
...++.+ +..+++.+ |.|+.-++ .+++. ...+.+.++++.+++. |+.+...+ .+|.|.++ .+.+.+.
T Consensus 128 e~A~~~g--~~~v~i~~-s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~--Gl~v~~~is~~fg~p~~~r~~~~~l~~~ 202 (347)
T PLN02746 128 EAAIAAG--AKEVAVFA-SASESFSKSNINCSIEESLVRYREVALAAKKH--SIPVRGYVSCVVGCPIEGPVPPSKVAYV 202 (347)
T ss_pred HHHHHcC--cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEEeeecCCccCCCCHHHHHHH
Confidence 3334332 56788888 78886663 44544 3556666899999998 98887666 67888774 4556666
Q ss_pred HHHHHhcCCCeEEE
Q 013195 368 VNLIKEYKFPQVHI 381 (448)
Q Consensus 368 l~~i~~l~~~~v~i 381 (448)
++.+.+.+.+.+.+
T Consensus 203 ~~~~~~~Gad~I~l 216 (347)
T PLN02746 203 AKELYDMGCYEISL 216 (347)
T ss_pred HHHHHHcCCCEEEe
Confidence 66667777776554
No 174
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=93.84 E-value=0.18 Score=47.91 Aligned_cols=184 Identities=16% Similarity=0.281 Sum_probs=115.3
Q ss_pred EEeCCCCCCCccceeeCccCC---CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCC
Q 013195 196 LPINVGCLGACTYCKTKHARG---HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (448)
Q Consensus 196 i~isrGC~~~CsFC~~~~~rg---~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~ 272 (448)
|..+.-|+.+|.||.....+. +-+..+.++++.-+..+..+|+..+.|++++.... .| +.+....+.. ++
T Consensus 15 islte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggeptIr-~d----i~~i~~g~~~-l~- 87 (323)
T KOG2876|consen 15 ISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIR-QD----IVPIVAGLSS-LP- 87 (323)
T ss_pred hhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCCccc-cc----ccchhhhhhc-cc-
Confidence 456778999999998765432 34556678888877777888999999998765544 33 2344444432 33
Q ss_pred CCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHh--CCCCEEEE
Q 013195 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL--VPGMQIAT 350 (448)
Q Consensus 273 ~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~--~pgi~i~~ 350 (448)
+...+-+. ++.-.+...+ .. +.+.+ ...+.+.+++....-...+.|..+...+...++.+.+. .| ..+..
T Consensus 88 -gLks~~IT-tng~vl~R~l---p~-lhkag-lssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~p-vkvn~ 159 (323)
T KOG2876|consen 88 -GLKSIGIT-TNGLVLARLL---PQ-LHKAG-LSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNP-VKVNC 159 (323)
T ss_pred -chhhhcee-ccchhhhhhh---hH-HHhhc-ccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCC-cceee
Confidence 33344443 2221112222 22 22333 46788888888888888888888889999999998876 23 56666
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhc--CCCeEEEEeceeCCCCcccCCCCCCH
Q 013195 351 DIICGFPGETDEDFNQTVNLIKEY--KFPQVHISQFYPRPGTPAARMKKVPS 400 (448)
Q Consensus 351 ~~IvG~PgET~ed~~~tl~~i~~l--~~~~v~i~~~~p~pGT~~~~~~~v~~ 400 (448)
-++=|+-+.. ..+|+.-. ++-.+.+-.|+|.-|.....-.-+|-
T Consensus 160 v~~k~~n~~e------v~Dfv~~tr~~p~DVrfIe~mpf~gn~~~t~~lIpy 205 (323)
T KOG2876|consen 160 VVMKGLNEDE------VFDFVLLTRMRPLDVRFIEFMPFDGNKWNTKSLIPY 205 (323)
T ss_pred EEEeccCCCc------ccceeeecCCCCcceEEEEecccCCCcccccccccH
Confidence 7777774432 23443322 33346677899998875443334553
No 175
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=93.81 E-value=0.038 Score=55.31 Aligned_cols=51 Identities=20% Similarity=0.363 Sum_probs=41.7
Q ss_pred CCCCCCCC-CceEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccc
Q 013195 50 SLSPKIPG-TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSP 109 (448)
Q Consensus 50 ~~~~~~~~-~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~ 109 (448)
.-.|++|+ ..+..|+|+||..|..|++++.+.|++.||.+ +.+-+-+++..
T Consensus 386 ~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYdv---------~~lFaysmR~k 437 (552)
T KOG2492|consen 386 HIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYDV---------VFLFAYSMREK 437 (552)
T ss_pred HHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHhccCe---------eeeEEeeeccc
Confidence 35688998 68999999999999999999999999999864 44445566544
No 176
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=93.30 E-value=0.27 Score=45.57 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcCC----CCEEEEcccc
Q 013195 74 DSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK----KPLVVAGCVP 135 (448)
Q Consensus 74 dse~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~----~~vVvgGc~a 135 (448)
-...++..|+..||++++- ..++|+|.+ ||+.+... ..+.++++.+++.+ .+|++||...
T Consensus 98 G~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~l-S~~~~~~~-~~~~~~i~~lr~~~~~~~~~i~vGG~~~ 175 (201)
T cd02070 98 GKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGL-SALMTTTM-GGMKEVIEALKEAGLRDKVKVMVGGAPV 175 (201)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-eccccccH-HHHHHHHHHHHHCCCCcCCeEEEECCcC
Confidence 3567788999999998753 468999999 66665543 45667777776654 4799999876
Q ss_pred ccchhh-hcCCccEEE
Q 013195 136 QGSRDL-KELEGVSIV 150 (448)
Q Consensus 136 ~~~~e~-~~~~~d~vv 150 (448)
+. +. ..+..|...
T Consensus 176 ~~--~~~~~~GaD~~~ 189 (201)
T cd02070 176 NQ--EFADEIGADGYA 189 (201)
T ss_pred CH--HHHHHcCCcEEE
Confidence 53 33 244445444
No 177
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=92.85 E-value=0.37 Score=43.05 Aligned_cols=76 Identities=20% Similarity=0.304 Sum_probs=52.0
Q ss_pred ceEEEEecCCccChhHHHHHHH-----HHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEcc
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAG-----QLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGC 133 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~-----~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc 133 (448)
..+++.++|+ |=.|.|.++. -+++.|+..+..+..||+++| |=+|+.+....+.++.++.-++...|.+|.|
T Consensus 31 ~Slw~~~~~t--~cC~iEi~a~~~p~yD~eRfGi~~~aSPRhADvLlV-tG~vT~km~~~l~~~yeqmPePK~VIA~G~C 107 (173)
T PRK14818 31 SSLYYLTFGL--ACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIV-AGTLTYKMAERARLLYDQMPEPKYVISMGSC 107 (173)
T ss_pred CCceeeEeCC--ccHHHHHHHhcCCccCHHHcCCeecCCcccccEEEE-eCcCccccHHHHHHHHHhCCCCCEEEEeccc
Confidence 3567777774 3377776653 357789999999999999999 6688877666655555554333333447778
Q ss_pred cccc
Q 013195 134 VPQG 137 (448)
Q Consensus 134 ~a~~ 137 (448)
..+.
T Consensus 108 A~sG 111 (173)
T PRK14818 108 SNCG 111 (173)
T ss_pred cccC
Confidence 6654
No 178
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=92.72 E-value=5.2 Score=39.26 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=89.7
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (448)
-.+.+.++.++-++.|.+.|+..|.+.+-....+-... .+-.+.++.|.+ .+ ...+. .+.+. . ..+..
T Consensus 20 ~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~-~d~~e~~~~l~~-~~---~~~~~--~l~~~--~---~~ie~ 87 (287)
T PRK05692 20 KRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQM-ADAAEVMAGIQR-RP---GVTYA--ALTPN--L---KGLEA 87 (287)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCccccccc-ccHHHHHHhhhc-cC---CCeEE--EEecC--H---HHHHH
Confidence 35678999999999999999999987521000000000 123566666653 22 22222 22231 1 22333
Q ss_pred HHhCCCcccccccccCCCCHHHH-HhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEE--eCCCC---CHHHHHHHHH
Q 013195 298 VLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIIC--GFPGE---TDEDFNQTVN 369 (448)
Q Consensus 298 l~~~~~~~~~l~iglES~s~~vL-k~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~Iv--G~PgE---T~ed~~~tl~ 369 (448)
..+.+ ...+++.+ |.|+..+ +.+++. ...+.+.++++.+++. |+.+...+.. |.|.+ +++.+.+.++
T Consensus 88 A~~~g--~~~v~i~~-~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~--g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
T PRK05692 88 ALAAG--ADEVAVFA-SASEAFSQKNINCSIAESLERFEPVAEAAKQA--GVRVRGYVSCVLGCPYEGEVPPEAVADVAE 162 (287)
T ss_pred HHHcC--CCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 33332 45677765 5565533 555554 3456688899999999 9888776664 65766 6778888888
Q ss_pred HHHhcCCCeEEE
Q 013195 370 LIKEYKFPQVHI 381 (448)
Q Consensus 370 ~i~~l~~~~v~i 381 (448)
.+.+.+.+.+.+
T Consensus 163 ~~~~~G~d~i~l 174 (287)
T PRK05692 163 RLFALGCYEISL 174 (287)
T ss_pred HHHHcCCcEEEe
Confidence 888888887654
No 179
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=92.55 E-value=0.34 Score=43.72 Aligned_cols=74 Identities=23% Similarity=0.515 Sum_probs=47.1
Q ss_pred eEEEEec--CCccChhHHHHHHHH-----HHhCCCeee-cCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEE
Q 013195 60 TIYMKTF--GCSHNQSDSEYMAGQ-----LSAFGYALT-DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (448)
Q Consensus 60 ~~~~~t~--GC~~N~~dse~~~~~-----L~~~G~~~~-~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvg 131 (448)
.++..++ || .|.|.++.. +++.|+..+ ..+..||+++| |=+|+......+.++.+...+....|.+|
T Consensus 42 slw~~~~~~~C----C~iE~~a~~~p~yD~eRfGi~~~~~sPRhADvllV-tG~VT~~m~~~l~~~~e~~p~pK~VIAvG 116 (182)
T PRK14816 42 SLWPLTFATSC----CGIEFMALGAARYDMARFGFEVARASPRQADMIMV-CGTITNKMAPVLKRLYDQMADPKYVIAVG 116 (182)
T ss_pred ccceeeeCcch----HHHHHHHhcCccccHHHhCccccCCCCCcceEEEE-ecCCcchhHHHHHHHHHhcCCCCEEEEec
Confidence 3455544 66 888876643 567788776 88999999999 66787765444444444433333334577
Q ss_pred ccccccc
Q 013195 132 GCVPQGS 138 (448)
Q Consensus 132 Gc~a~~~ 138 (448)
-|..+..
T Consensus 117 sCA~~GG 123 (182)
T PRK14816 117 GCAVSGG 123 (182)
T ss_pred cccccCC
Confidence 8876544
No 180
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=92.48 E-value=7.7 Score=37.48 Aligned_cols=142 Identities=11% Similarity=0.046 Sum_probs=90.5
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (448)
-...+.++.++-++.|.+.|++.|.+.. ...+ ....+.++.+... . ....+ .....+. .+. +..
T Consensus 16 ~~~~s~~~k~~i~~~L~~~Gv~~IEvG~---P~~~----~~~~~~~~~l~~~-~--~~~~v-~~~~r~~--~~d---i~~ 79 (262)
T cd07948 16 NAFFDTEDKIEIAKALDAFGVDYIELTS---PAAS----PQSRADCEAIAKL-G--LKAKI-LTHIRCH--MDD---ARI 79 (262)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEC---CCCC----HHHHHHHHHHHhC-C--CCCcE-EEEecCC--HHH---HHH
Confidence 3678999999999999999999999864 2222 2345666666542 2 11222 2223332 122 333
Q ss_pred HHhCCCcccccccccCCCCHHHHH-hcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 013195 298 VLRHPCVYSFLHVPVQSGSDAVLS-AMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 298 l~~~~~~~~~l~iglES~s~~vLk-~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l 374 (448)
.... + ...+++.+ |.|+..++ .+++. ...+.+.++++.+++. |+.+..++.-.| +-+.+.+.+.++.+.++
T Consensus 80 a~~~-g-~~~i~i~~-~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~--G~~v~~~~eda~-r~~~~~l~~~~~~~~~~ 153 (262)
T cd07948 80 AVET-G-VDGVDLVF-GTSPFLREASHGKSITEIIESAVEVIEFVKSK--GIEVRFSSEDSF-RSDLVDLLRVYRAVDKL 153 (262)
T ss_pred HHHc-C-cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeeC-CCCHHHHHHHHHHHHHc
Confidence 3333 2 45666666 66775553 34443 3456677788999998 999988887666 34578888888888998
Q ss_pred CCCeEEE
Q 013195 375 KFPQVHI 381 (448)
Q Consensus 375 ~~~~v~i 381 (448)
+.+.+.+
T Consensus 154 g~~~i~l 160 (262)
T cd07948 154 GVNRVGI 160 (262)
T ss_pred CCCEEEE
Confidence 8876543
No 181
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=92.45 E-value=6.1 Score=38.44 Aligned_cols=147 Identities=15% Similarity=0.181 Sum_probs=87.2
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (448)
..+.+.++-++-++.|.+.|++.|.+..--...+.... .+..++++.+.. . ... ++..+.+. .+ .+..
T Consensus 14 ~~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~-~d~~~~~~~l~~-~---~~~--~~~~~~~~--~~---dv~~ 81 (274)
T cd07938 14 KTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQM-ADAEEVLAGLPR-R---PGV--RYSALVPN--LR---GAER 81 (274)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccc-CCHHHHHhhccc-C---CCC--EEEEECCC--HH---HHHH
Confidence 46788999999999999999999988531000000100 122344444432 1 222 22222221 12 2333
Q ss_pred HHhCCCcccccccccCCCCHH-HHHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EeCCCC---CHHHHHHHHH
Q 013195 298 VLRHPCVYSFLHVPVQSGSDA-VLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDII--CGFPGE---TDEDFNQTVN 369 (448)
Q Consensus 298 l~~~~~~~~~l~iglES~s~~-vLk~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~I--vG~PgE---T~ed~~~tl~ 369 (448)
..+.+ ...+++.+ |.|+. ..+.+++. ...+...+.++.+++. |..+...+. +|.|.+ +.+.+.+.++
T Consensus 82 A~~~g--~~~i~i~~-~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~--G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~ 156 (274)
T cd07938 82 ALAAG--VDEVAVFV-SASETFSQKNINCSIAESLERFEPVAELAKAA--GLRVRGYVSTAFGCPYEGEVPPERVAEVAE 156 (274)
T ss_pred HHHcC--cCEEEEEE-ecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeEecCCCCCCCCHHHHHHHHH
Confidence 44332 45677776 44554 44666665 4567788889999999 887776666 555655 4566667777
Q ss_pred HHHhcCCCeEEE
Q 013195 370 LIKEYKFPQVHI 381 (448)
Q Consensus 370 ~i~~l~~~~v~i 381 (448)
.+.+.+.+.+.+
T Consensus 157 ~~~~~Ga~~i~l 168 (274)
T cd07938 157 RLLDLGCDEISL 168 (274)
T ss_pred HHHHcCCCEEEE
Confidence 777778776554
No 182
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=91.76 E-value=0.46 Score=41.54 Aligned_cols=73 Identities=26% Similarity=0.473 Sum_probs=43.3
Q ss_pred eEEEEecC--CccChhHHHHHHHH-----HHhCC-CeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEE
Q 013195 60 TIYMKTFG--CSHNQSDSEYMAGQ-----LSAFG-YALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (448)
Q Consensus 60 ~~~~~t~G--C~~N~~dse~~~~~-----L~~~G-~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvg 131 (448)
.+++..+| | .|.|.++.. +++.| ...+..+..||+.+| |=+++.+..+.+.++-++..+....|.+|
T Consensus 18 s~w~~~~~t~c----C~iE~~~~~~~~~D~erfG~i~~~~sPr~aDvllV-tG~vt~~~~~~l~~~~e~~p~pk~VIA~G 92 (145)
T TIGR01957 18 SLWPLTFGLAC----CAIEMMATGASRYDLDRFGSEVFRASPRQADVMIV-AGTVTKKMAPALRRLYDQMPEPKWVISMG 92 (145)
T ss_pred CceeeeeCccH----HHHHHHHccCccccHHHhCCceecCCCCcceEEEE-ecCCcHHHHHHHHHHHHhccCCceEEEec
Confidence 34444444 6 777776654 35556 566778899999999 55887764444444333332222234477
Q ss_pred cccccc
Q 013195 132 GCVPQG 137 (448)
Q Consensus 132 Gc~a~~ 137 (448)
-|....
T Consensus 93 sCA~~G 98 (145)
T TIGR01957 93 ACANSG 98 (145)
T ss_pred ceeecC
Confidence 775543
No 183
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=91.41 E-value=1.3 Score=40.90 Aligned_cols=86 Identities=12% Similarity=0.107 Sum_probs=56.1
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcC
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~ 124 (448)
.++-+-|.+=-.-..--..++..|+.+||++++- ...+|+|.+ ||+.+... ..+.++++++++.
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~l-S~~~~~~~-~~~~~~i~~l~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTG-SALMTTTM-YGQKDINDKLKEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEE-ccccccCH-HHHHHHHHHHHHc
Confidence 3554444333333445567788899999999753 578999999 77776654 3467778888766
Q ss_pred C----CCEEEEccccccchhhh-cCCccE
Q 013195 125 K----KPLVVAGCVPQGSRDLK-ELEGVS 148 (448)
Q Consensus 125 ~----~~vVvgGc~a~~~~e~~-~~~~d~ 148 (448)
+ .+|++||-.. .+++. .+..|.
T Consensus 163 ~~~~~v~i~vGG~~~--~~~~~~~~gad~ 189 (197)
T TIGR02370 163 GYRDSVKFMVGGAPV--TQDWADKIGADV 189 (197)
T ss_pred CCCCCCEEEEEChhc--CHHHHHHhCCcE
Confidence 3 5799999554 35542 444443
No 184
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=91.31 E-value=7.9 Score=37.20 Aligned_cols=141 Identities=18% Similarity=0.195 Sum_probs=86.6
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (448)
...+.++.++-++.|.+.|+..|.+.- ...+. .-.+.++.+.+... + .++....+.. .+. +...
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iE~g~---p~~~~----~~~e~~~~l~~~~~--~---~~~~~~~r~~-~~~---v~~a 78 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVDEIEVGI---PAMGE----EEREAIRAIVALGL--P---ARLIVWCRAV-KED---IEAA 78 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEec---CCCCH----HHHHHHHHHHhcCC--C---CEEEEeccCC-HHH---HHHH
Confidence 467899999999999999999998842 22221 12467777765322 1 2222222111 111 3223
Q ss_pred HhCCCcccccccccCCCCHHHH-HhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 013195 299 LRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (448)
Q Consensus 299 ~~~~~~~~~l~iglES~s~~vL-k~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (448)
... + ...+++.+ |.|+.-+ +.+|+. ...+.+.+.++.+++. |+.+...++... .-+.+.+.+.++.+.+.+
T Consensus 79 ~~~-g-~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~G 152 (259)
T cd07939 79 LRC-G-VTAVHISI-PVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDR--GLFVSVGAEDAS-RADPDFLIEFAEVAQEAG 152 (259)
T ss_pred HhC-C-cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEeeccCC-CCCHHHHHHHHHHHHHCC
Confidence 332 2 46677766 5666543 566654 3456677899999998 887765554443 235777888888888888
Q ss_pred CCeEEE
Q 013195 376 FPQVHI 381 (448)
Q Consensus 376 ~~~v~i 381 (448)
.+.+.+
T Consensus 153 ~~~i~l 158 (259)
T cd07939 153 ADRLRF 158 (259)
T ss_pred CCEEEe
Confidence 876543
No 185
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=90.84 E-value=0.2 Score=45.45 Aligned_cols=73 Identities=19% Similarity=0.281 Sum_probs=45.7
Q ss_pred EEEEecCCccChhHHHHHH-----HHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEcccc
Q 013195 61 IYMKTFGCSHNQSDSEYMA-----GQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVP 135 (448)
Q Consensus 61 ~~~~t~GC~~N~~dse~~~-----~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a 135 (448)
+++.+||+. -.|.|.++ -.|++.|+..+..+..||+++| |=+|+.+....+.++.++.-++...|.+|-|..
T Consensus 30 lw~~~~~t~--cC~iE~~a~~~p~yD~eRfGi~~~asPR~ADvllV-tG~Vt~km~~~l~~~y~qmPePK~VIA~GaCA~ 106 (189)
T PRK14813 30 LWPMGFGLA--CCAIEMMATNASNYDLERFGIFPRSSPRQSDLMIV-AGTVTMKMAERVVRLYEQMPEPRYVLSMGSCSN 106 (189)
T ss_pred CceeeeCcc--cHHHHHHHhcccCCCHHHcCCeecCCcccceEEEE-eccCchhhHHHHHHHHHhCCCCCEEEEeccccc
Confidence 444444443 24555443 3467789989999999999999 557887655555555555433333344777865
Q ss_pred c
Q 013195 136 Q 136 (448)
Q Consensus 136 ~ 136 (448)
+
T Consensus 107 s 107 (189)
T PRK14813 107 C 107 (189)
T ss_pred C
Confidence 4
No 186
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=89.64 E-value=13 Score=37.94 Aligned_cols=142 Identities=12% Similarity=0.042 Sum_probs=88.2
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (448)
.+.+.++.++-++.|.+.|+..|.+. +...+. .-.+.++.+.+.. . ..++...... .... +..+
T Consensus 21 ~~~s~e~k~~ia~~L~~~GV~~IE~G---~p~~~~----~~~e~i~~i~~~~----~-~~~i~~~~r~-~~~d---i~~a 84 (378)
T PRK11858 21 VVFTNEEKLAIARMLDEIGVDQIEAG---FPAVSE----DEKEAIKAIAKLG----L-NASILALNRA-VKSD---IDAS 84 (378)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEe---CCCcCh----HHHHHHHHHHhcC----C-CeEEEEEccc-CHHH---HHHH
Confidence 46789999999999999999999874 222222 1246777776532 1 2233322221 1222 3333
Q ss_pred HhCCCcccccccccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCC
Q 013195 299 LRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376 (448)
Q Consensus 299 ~~~~~~~~~l~iglES~s~~vLk~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~ 376 (448)
...+ ...+++.+-+.+..+...+++. ...+.+.+.++.+++. |+.+..+..-+. --+.+.+.+.++.+.+.+.
T Consensus 85 ~~~g--~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~--G~~v~~~~ed~~-r~~~~~l~~~~~~~~~~Ga 159 (378)
T PRK11858 85 IDCG--VDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDH--GLYVSFSAEDAS-RTDLDFLIEFAKAAEEAGA 159 (378)
T ss_pred HhCC--cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEeccCC-CCCHHHHHHHHHHHHhCCC
Confidence 3332 4678887744333444566654 3456667788899988 887776655443 3457778888888888888
Q ss_pred CeEEE
Q 013195 377 PQVHI 381 (448)
Q Consensus 377 ~~v~i 381 (448)
+.+.+
T Consensus 160 ~~I~l 164 (378)
T PRK11858 160 DRVRF 164 (378)
T ss_pred CEEEE
Confidence 76554
No 187
>PF01938 TRAM: TRAM domain; InterPro: IPR002792 The TRAM (after TRM2 and miaB) domain is a 60-70-residue-long module that is found in: Two distinct classes of tRNA-modifying enzymes, namely uridine methylases of the TRM2 family and enzymes of the miaB family that are involved in 2- methylthioadenine formation In several other proteins associated with the translation machinery In a family of small uncharacterised archaeal proteins that are predicted to have a role in the regulation of tRNA modification and/or translation The TRAM domain can be found alone or in association with other domains, such as the catalytic biotin/lipoate synthetase-like domain, the RNA methylase domain, the ribosomal S2 domain and the eIF2-beta domain. The TRAM domain is predicted to bind tRNA and deliver the RNA-modifying enzymatic domain to their targets []. Secondary structure prediction indicates that the TRAM domain adopts a simple beta-barrel fold. The conservation pattern of the TRAM domain consists primarily of small and hydrophobic residues that correspond to five beta-strands in the predicted secondary structure [].; PDB: 1YEZ_A 2BH2_A 1UWV_A 1YVC_A.
Probab=89.61 E-value=0.52 Score=34.54 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=18.8
Q ss_pred hcCCCcEEEEEEEEEecCCceEEEeeC
Q 013195 421 LGMEGRVERIWITEIAADGIHLVRLEQ 447 (448)
Q Consensus 421 ~~~~g~~~~vlve~~~~~~~~~~g~~~ 447 (448)
++++|++++||||+.+ ++.+++||+.
T Consensus 1 ~~~~G~~~~VlVe~~~-~~g~~~gr~~ 26 (61)
T PF01938_consen 1 QSYVGKTLEVLVEELG-DEGQGIGRTD 26 (61)
T ss_dssp ---TTEEEEEEEEEE--TTSEEEEEET
T ss_pred CccCCcEEEEEEEEec-CCCEEEEEeC
Confidence 4689999999999997 4446899985
No 188
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=89.37 E-value=0.6 Score=41.00 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=38.6
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccccchh-hhcCCccEEEcC
Q 013195 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIVGV 152 (448)
Q Consensus 94 ~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e-~~~~~~d~vvg~ 152 (448)
++||+++|+..|+.+.+- ..+++..+ +++.+++-|+-++..|+ +....++.+-|.
T Consensus 61 ~~aD~viiTGsTlvN~Ti---~~iL~~~~-~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~ 116 (147)
T PF04016_consen 61 PWADVVIITGSTLVNGTI---DDILELAR-NAREVILYGPSAPLHPEALFDYGVTYVGGS 116 (147)
T ss_dssp GG-SEEEEECHHCCTTTH---HHHHHHTT-TSSEEEEESCCGGS-GGGGCCTT-SEEEEE
T ss_pred ccCCEEEEEeeeeecCCH---HHHHHhCc-cCCeEEEEecCchhhHHHHHhCCCCEEEEE
Confidence 569999999999988764 44555554 46789999999999997 455556665554
No 189
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=89.21 E-value=1.1 Score=42.01 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=49.9
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcC
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~ 124 (448)
.++-+-|..=-.-.---..++..|+..||++++- ..+||+|.+ ||+.+.. ...+.++++++++.
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~l-S~~~~~~-~~~~~~~i~~L~~~ 166 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGL-SGLLVPS-LDEMVEVAEEMNRR 166 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-ccchhcc-HHHHHHHHHHHHhc
Confidence 3554433333333444566788899999999764 467999999 6666544 34567778877766
Q ss_pred C--CCEEEEccc
Q 013195 125 K--KPLVVAGCV 134 (448)
Q Consensus 125 ~--~~vVvgGc~ 134 (448)
+ .+|++||-.
T Consensus 167 ~~~~~i~vGG~~ 178 (213)
T cd02069 167 GIKIPLLIGGAA 178 (213)
T ss_pred CCCCeEEEEChh
Confidence 4 579999953
No 190
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=88.88 E-value=0.9 Score=41.23 Aligned_cols=64 Identities=20% Similarity=0.363 Sum_probs=39.7
Q ss_pred hHHHHHHHHH-----HhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEcccccc
Q 013195 73 SDSEYMAGQL-----SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137 (448)
Q Consensus 73 ~dse~~~~~L-----~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~ 137 (448)
.|.|.++... ++.|...+..+.+||+.+| |=+++.+....+.++.+...+....|.+|-|....
T Consensus 47 C~iE~~~~~~~~yDieRfGi~~~~sPr~aDvllV-~G~vt~~~~~~l~~~~e~mp~pk~VIA~GaCA~~G 115 (183)
T PRK06411 47 CAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIV-AGTLTNKMAPALRRLYDQMPEPKWVISMGSCANSG 115 (183)
T ss_pred hHHHHHHccCccccHHHhCccccCCCCceeEEEE-EeCCCccchHHHHHHHHHcCcCCeEEEEecccccC
Confidence 8888776543 4456656778899999999 55777764444333333332323334578786653
No 191
>PRK14819 NADH dehydrogenase subunit B; Provisional
Probab=88.52 E-value=1.2 Score=42.18 Aligned_cols=76 Identities=20% Similarity=0.366 Sum_probs=46.7
Q ss_pred ceEEEEecCCccChhHHHHHHHHH-----HhCCCe-eecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEc
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQL-----SAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAG 132 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L-----~~~G~~-~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgG 132 (448)
..+++.++|| +-.|.|.++... ++.|+. .+..+..||+.+| |=+|+.+....+.++.++..+....|.+|-
T Consensus 31 ~Slw~~~~gt--~CC~iEila~l~p~yDieRFGi~~~~~sPRhADIlLV-tG~VT~km~~~L~rlyeqmP~PK~VIAvGa 107 (264)
T PRK14819 31 SSVWPMAFGL--ACCAIEMMATGLSRYDLARFGAELFRASPRQADLMIV-AGTVTKKMAPQVVRLYNQMPEPRYVISMGA 107 (264)
T ss_pred CCcceeeeCC--cccHHHHHHhccccccHHHhCcccccCCCCcceEEEE-ecCCchhhHHHHHHHHHhccCCCeEEEEcc
Confidence 4577777775 337888776553 445664 5677889999999 557777654444444443322222344777
Q ss_pred ccccc
Q 013195 133 CVPQG 137 (448)
Q Consensus 133 c~a~~ 137 (448)
|..+.
T Consensus 108 CA~~G 112 (264)
T PRK14819 108 CATSG 112 (264)
T ss_pred ccccC
Confidence 86654
No 192
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=87.73 E-value=28 Score=33.70 Aligned_cols=140 Identities=14% Similarity=0.147 Sum_probs=87.0
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCC-CCCCCC--CCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTG-AYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~-~yg~d~--~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el 295 (448)
.+.+.++.++-++.|.+.|+..|.+.-.... .+.... -.+ .+.++++.+... ....+.. +.++...... .+
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~-~~~~~~~~~~--~l 88 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCD-DEFLRRLLGDSK--GNTKIAV-MVDYGNDDID--LL 88 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCC-HHHHHHHHhhhc--cCCEEEE-EECCCCCCHH--HH
Confidence 3578899999999999999999987521111 111100 011 356666654321 1233333 2444432211 13
Q ss_pred HHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 013195 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (448)
Q Consensus 296 ~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (448)
.... ..+ ...+++.+ +....++..+.++.+++. |+.+...++..+ +-+++.+.+.++.+.+.+
T Consensus 89 ~~a~-~~g-v~~iri~~------------~~~~~~~~~~~i~~ak~~--G~~v~~~~~~a~-~~~~~~~~~~~~~~~~~g 151 (266)
T cd07944 89 EPAS-GSV-VDMIRVAF------------HKHEFDEALPLIKAIKEK--GYEVFFNLMAIS-GYSDEELLELLELVNEIK 151 (266)
T ss_pred HHHh-cCC-cCEEEEec------------ccccHHHHHHHHHHHHHC--CCeEEEEEEeec-CCCHHHHHHHHHHHHhCC
Confidence 3222 222 35566654 223688999999999999 998888888776 568899999999999999
Q ss_pred CCeEEE
Q 013195 376 FPQVHI 381 (448)
Q Consensus 376 ~~~v~i 381 (448)
++.+.+
T Consensus 152 ~~~i~l 157 (266)
T cd07944 152 PDVFYI 157 (266)
T ss_pred CCEEEE
Confidence 887654
No 193
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=87.52 E-value=21 Score=34.45 Aligned_cols=145 Identities=15% Similarity=0.071 Sum_probs=86.4
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (448)
...+.++.++-++.|.+.|+..|.+.. +..+.+ . .+.++.+.+..+ + ..+.. .+++. ...++...+.
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iEvg~---~~~~~~---~-~~~~~~l~~~~~--~-~~~~~-l~r~~--~~~v~~a~~~ 81 (268)
T cd07940 15 VSLTPEEKLEIARQLDELGVDVIEAGF---PAASPG---D-FEAVKRIAREVL--N-AEICG-LARAV--KKDIDAAAEA 81 (268)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCHH---H-HHHHHHHHHhCC--C-CEEEE-EccCC--HhhHHHHHHh
Confidence 467899999999999999999998853 111111 1 367777766443 2 23322 22222 1222222221
Q ss_pred HhCCCcccccccccCCCCHHHH-HhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 013195 299 LRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (448)
Q Consensus 299 ~~~~~~~~~l~iglES~s~~vL-k~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (448)
... .....+.+-+ |.|+.-+ +.+++. ...+.+.+.++.+++. |+.+...++.+. .-+++.+.+.++.+.+++
T Consensus 82 ~~~-~~~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~G 156 (268)
T cd07940 82 LKP-AKVDRIHTFI-ATSDIHLKYKLKKTREEVLERAVEAVEYAKSH--GLDVEFSAEDAT-RTDLDFLIEVVEAAIEAG 156 (268)
T ss_pred CCC-CCCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEeeecCC-CCCHHHHHHHHHHHHHcC
Confidence 111 1134555544 5666544 556654 3457788899999998 887764444433 246777888888888888
Q ss_pred CCeEEE
Q 013195 376 FPQVHI 381 (448)
Q Consensus 376 ~~~v~i 381 (448)
++.+.+
T Consensus 157 ~~~i~l 162 (268)
T cd07940 157 ATTINI 162 (268)
T ss_pred CCEEEE
Confidence 876543
No 194
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=87.36 E-value=1.6 Score=39.49 Aligned_cols=73 Identities=19% Similarity=0.348 Sum_probs=43.2
Q ss_pred eEEEEecCCccChhHHHHHHHH-----HHhCCCeee-cCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCC--EEEE
Q 013195 60 TIYMKTFGCSHNQSDSEYMAGQ-----LSAFGYALT-DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVA 131 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~~-----L~~~G~~~~-~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~--vVvg 131 (448)
.+++.++||.= .|.|.++-. +++.|+..+ ..+..||+++| |=+|+.+..+.+.++-+.. +.++ |.+|
T Consensus 34 Slw~~~~~~sC--C~iE~~a~~~~~yDieRfGi~~~~~SPR~ADillV-tG~VT~~m~~~l~r~ye~~--p~pK~VIAvG 108 (183)
T PRK14815 34 SLWPMPMGLAC--CAIELMAVACSRFDISRFGAEVMRFSPRQADVMIV-AGTVTYKMALAVRRIYDQM--PEPKWVIAMG 108 (183)
T ss_pred CccceeEccch--HHHHHHHhcCccccHHHhCcccCCCCCccccEEEE-eCcCchhhHHHHHHHHHhC--CCCCEEEEec
Confidence 45565555532 777766532 456676654 77899999999 5678776444433333332 3344 4477
Q ss_pred cccccc
Q 013195 132 GCVPQG 137 (448)
Q Consensus 132 Gc~a~~ 137 (448)
.|..+.
T Consensus 109 sCA~~G 114 (183)
T PRK14815 109 ACASSG 114 (183)
T ss_pred cccccC
Confidence 785543
No 195
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=87.22 E-value=18 Score=36.65 Aligned_cols=140 Identities=15% Similarity=0.147 Sum_probs=85.2
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (448)
.+.+.++.++-++.|.+.|++.|.+. +...+. .-.+.++.+.+..+ . ..+. ...++. .+. +..+
T Consensus 18 ~~~s~~~k~~ia~~L~~~Gv~~IEvG---~p~~~~----~~~e~i~~i~~~~~--~-~~i~-~~~r~~--~~d---i~~a 81 (365)
T TIGR02660 18 VAFTAAEKLAIARALDEAGVDELEVG---IPAMGE----EERAVIRAIVALGL--P-ARLM-AWCRAR--DAD---IEAA 81 (365)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe---CCCCCH----HHHHHHHHHHHcCC--C-cEEE-EEcCCC--HHH---HHHH
Confidence 56889999999999999999999884 222222 12467788876432 2 2221 112232 222 3333
Q ss_pred HhCCCcccccccccCCCCHHHH-HhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 013195 299 LRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (448)
Q Consensus 299 ~~~~~~~~~l~iglES~s~~vL-k~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (448)
... + ...+++.+ +.|+.-+ ..+++. ...+.+.++++.+++. |+.+..++.-+. --+.+.+.+.++.+.+.+
T Consensus 82 ~~~-g-~~~i~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~--g~~v~~~~ed~~-r~~~~~l~~~~~~~~~~G 155 (365)
T TIGR02660 82 ARC-G-VDAVHISI-PVSDLQIEAKLRKDRAWVLERLARLVSFARDR--GLFVSVGGEDAS-RADPDFLVELAEVAAEAG 155 (365)
T ss_pred HcC-C-cCEEEEEE-ccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhC--CCEEEEeecCCC-CCCHHHHHHHHHHHHHcC
Confidence 333 2 35677766 5666544 555554 3445667888889888 887765554432 234677777777788888
Q ss_pred CCeEE
Q 013195 376 FPQVH 380 (448)
Q Consensus 376 ~~~v~ 380 (448)
.+.+.
T Consensus 156 a~~i~ 160 (365)
T TIGR02660 156 ADRFR 160 (365)
T ss_pred cCEEE
Confidence 77653
No 196
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=87.03 E-value=1.2 Score=41.52 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=46.8
Q ss_pred eEEEEecCCccChhHHHHHHH-----HHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccc
Q 013195 60 TIYMKTFGCSHNQSDSEYMAG-----QLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCV 134 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~-----~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~ 134 (448)
.+++.++|+.= .|.|.++. .|++.|+..+..+..||+++| |=+|+.+....+.++-+...++...|.+|-|.
T Consensus 33 Slw~~~~g~sC--C~iE~~a~~~p~yDleRfGi~~~aSPRhADvliV-tG~VT~km~~~L~rlyeqmPePK~VIA~GaCA 109 (225)
T CHL00023 33 SLWPLLYGTSC--CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT-AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACT 109 (225)
T ss_pred CcccccCCcch--HHHHHHHhCCCccCHHHcCCeecCCcccceEEEE-ecCCccccHHHHHHHHHhcCCCCeEEEEcccc
Confidence 34544444322 77777653 256778888999999999999 66888765444444444433333334477776
Q ss_pred ccc
Q 013195 135 PQG 137 (448)
Q Consensus 135 a~~ 137 (448)
.+.
T Consensus 110 ~sG 112 (225)
T CHL00023 110 ITG 112 (225)
T ss_pred ccC
Confidence 543
No 197
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=86.81 E-value=3.1 Score=39.30 Aligned_cols=144 Identities=14% Similarity=0.158 Sum_probs=83.8
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHH
Q 013195 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~ 299 (448)
..+.++.++-++.|.+.|+..|.+. +...+. .-.+.++.+.+..+ . ..+.. ...+. ....+...+.+
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEvg---~~~~~~----~~~~~v~~~~~~~~--~-~~~~~-~~~~~--~~~i~~~~~~~ 76 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEVG---FPFASE----DDFEQVRRLREALP--N-ARLQA-LCRAN--EEDIERAVEAA 76 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEEE---HCTSSH----HHHHHHHHHHHHHH--S-SEEEE-EEESC--HHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEc---ccccCH----HHHHHhhhhhhhhc--c-cccce-eeeeh--HHHHHHHHHhh
Confidence 4788999999999999999999885 112222 12445555555443 2 22211 12222 11222212222
Q ss_pred hCCCcccccccccCCCCHH-HHHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCC
Q 013195 300 RHPCVYSFLHVPVQSGSDA-VLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376 (448)
Q Consensus 300 ~~~~~~~~l~iglES~s~~-vLk~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~ 376 (448)
...+ ...+++.+ +.|+. ....+++. ...+.+.++++.+++. |..+...++-.. .-+++.+.+.++.+.++++
T Consensus 77 ~~~g-~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~--g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 151 (237)
T PF00682_consen 77 KEAG-IDIIRIFI-SVSDLHIRKNLNKSREEALERIEEAVKYAKEL--GYEVAFGCEDAS-RTDPEELLELAEALAEAGA 151 (237)
T ss_dssp HHTT-SSEEEEEE-ETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHT--TSEEEEEETTTG-GSSHHHHHHHHHHHHHHT-
T ss_pred Hhcc-CCEEEecC-cccHHHHHHhhcCCHHHHHHHHHHHHHHHHhc--CCceEeCccccc-cccHHHHHHHHHHHHHcCC
Confidence 2223 45666655 45663 33555543 3467788889999999 888855554443 3467888999999999998
Q ss_pred CeEEE
Q 013195 377 PQVHI 381 (448)
Q Consensus 377 ~~v~i 381 (448)
+.+.+
T Consensus 152 ~~i~l 156 (237)
T PF00682_consen 152 DIIYL 156 (237)
T ss_dssp SEEEE
T ss_pred eEEEe
Confidence 87754
No 198
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=86.55 E-value=29 Score=35.19 Aligned_cols=142 Identities=14% Similarity=0.033 Sum_probs=89.8
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (448)
-...+.++.++-++.|.+.|+..|.+.. +..+. .-.+.++.+.+... ...+. .+..+. .+. +..
T Consensus 16 ~~~~s~~~k~~ia~~L~~~Gv~~IEvG~---p~~~~----~~~e~i~~i~~~~~---~~~v~-~~~r~~--~~d---i~~ 79 (363)
T TIGR02090 16 GVSLTVEQKVEIARKLDELGVDVIEAGF---PIASE----GEFEAIKKISQEGL---NAEIC-SLARAL--KKD---IDK 79 (363)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCh----HHHHHHHHHHhcCC---CcEEE-EEcccC--HHH---HHH
Confidence 3567899999999999999999998742 22222 22566777765321 22221 112221 222 333
Q ss_pred HHhCCCcccccccccCCCCHHHH-HhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 013195 298 VLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 298 l~~~~~~~~~l~iglES~s~~vL-k~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l 374 (448)
+...+ ...+++-+ +.|+.-+ ..+++. ...+.+.+.++.+++. |+.+...+.-.. --+.+.+.+.++.+.+.
T Consensus 80 a~~~g--~~~i~i~~-~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~--G~~v~~~~eda~-r~~~~~l~~~~~~~~~~ 153 (363)
T TIGR02090 80 AIDCG--VDSIHTFI-ATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEH--GLIVEFSAEDAT-RTDIDFLIKVFKRAEEA 153 (363)
T ss_pred HHHcC--cCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEeecC-CCCHHHHHHHHHHHHhC
Confidence 33332 45666655 4455443 455654 3567888999999999 988887776554 45678888888888888
Q ss_pred CCCeEEE
Q 013195 375 KFPQVHI 381 (448)
Q Consensus 375 ~~~~v~i 381 (448)
+.+.+.+
T Consensus 154 g~~~i~l 160 (363)
T TIGR02090 154 GADRINI 160 (363)
T ss_pred CCCEEEE
Confidence 8887654
No 199
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=84.93 E-value=2.6 Score=34.90 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=36.1
Q ss_pred eEEEEecC-CccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccc---hHHHHHHHHHHHhcC-CCCEEEE
Q 013195 60 TIYMKTFG-CSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSP---SQSAMDTLIAKCKSA-KKPLVVA 131 (448)
Q Consensus 60 ~~~~~t~G-C~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~---a~~~~~~~i~~~~~~-~~~vVvg 131 (448)
-+.|.|=| |+ .......+..|.+.| +|+|-+.||.+... .=.....+.+.++++ |.+||.|
T Consensus 40 lvgf~~CgGCp--g~~~~~~~~~l~~~~---------~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi~VV~G 105 (107)
T PF08821_consen 40 LVGFFTCGGCP--GRKLVRRIKKLKKNG---------ADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGIEVVEG 105 (107)
T ss_pred EEEEeeCCCCC--hhHHHHHHHHHHHCC---------CCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCCCEeee
Confidence 45565555 99 555555666666544 77999999998733 101133344444444 7777765
No 200
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=84.93 E-value=45 Score=33.44 Aligned_cols=161 Identities=15% Similarity=0.166 Sum_probs=99.1
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEec-----CCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSE-----DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~-----~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~ 293 (448)
...+.+++++-++.|.+.|+..|.+.-. ..+.||... ..=.+.++++.+..+ ...+.. .+.|..-+. +
T Consensus 19 ~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~-~~~~e~i~~~~~~~~---~~~~~~-ll~pg~~~~--~ 91 (333)
T TIGR03217 19 HQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSA-HTDLEYIEAAADVVK---RAKVAV-LLLPGIGTV--H 91 (333)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCC-CChHHHHHHHHHhCC---CCEEEE-EeccCccCH--H
Confidence 3568999999999999999999988621 122333321 122466777766543 223332 234422111 2
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHh
Q 013195 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (448)
Q Consensus 294 el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~ 373 (448)
.+......+ ...+.+.. +.+ ..+...+.++.+++. |..+...++..+ .-|++.+.+.++.+.+
T Consensus 92 dl~~a~~~g--vd~iri~~-~~~-----------e~d~~~~~i~~ak~~--G~~v~~~l~~s~-~~~~e~l~~~a~~~~~ 154 (333)
T TIGR03217 92 DLKAAYDAG--ARTVRVAT-HCT-----------EADVSEQHIGMAREL--GMDTVGFLMMSH-MTPPEKLAEQAKLMES 154 (333)
T ss_pred HHHHHHHCC--CCEEEEEe-ccc-----------hHHHHHHHHHHHHHc--CCeEEEEEEccc-CCCHHHHHHHHHHHHh
Confidence 243333332 35566554 222 234678999999999 999888888776 5688999999999999
Q ss_pred cCCCeEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHHHH
Q 013195 374 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413 (448)
Q Consensus 374 l~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~ 413 (448)
.+.+.+++. ---| ...++...++...+.+.
T Consensus 155 ~Ga~~i~i~---DT~G-------~~~P~~v~~~v~~l~~~ 184 (333)
T TIGR03217 155 YGADCVYIV---DSAG-------AMLPDDVRDRVRALKAV 184 (333)
T ss_pred cCCCEEEEc---cCCC-------CCCHHHHHHHHHHHHHh
Confidence 998876542 1111 23456666777666654
No 201
>PRK00915 2-isopropylmalate synthase; Validated
Probab=84.90 E-value=24 Score=37.59 Aligned_cols=146 Identities=10% Similarity=-0.010 Sum_probs=83.9
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (448)
..+.+.++-++-++.|.+.|++.|.+... ..+.+ + .+.++++.+..+ ...+.. +.... ...++...+
T Consensus 20 g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p---~~s~~---d-~~~v~~i~~~~~---~~~i~a-~~r~~--~~did~a~~ 86 (513)
T PRK00915 20 GASLTVEEKLQIAKQLERLGVDVIEAGFP---ASSPG---D-FEAVKRIARTVK---NSTVCG-LARAV--KKDIDAAAE 86 (513)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcCC---CCChH---H-HHHHHHHHhhCC---CCEEEE-EccCC--HHHHHHHHH
Confidence 35789999999999999999999988421 11221 1 355577755432 223222 12221 122222333
Q ss_pred HHhCCCcccccccccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 013195 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (448)
Q Consensus 298 l~~~~~~~~~l~iglES~s~~vLk~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (448)
.+...+ ...+++-+-+.+-.+...+++. ...+.+.+.++.+++. |..+..+..-+.. -+.+.+.+.++.+.+.+
T Consensus 87 a~~~~~-~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--g~~v~f~~ed~~r-~d~~~l~~~~~~~~~~G 162 (513)
T PRK00915 87 ALKPAE-APRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSY--TDDVEFSAEDATR-TDLDFLCRVVEAAIDAG 162 (513)
T ss_pred HhhcCC-CCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEeCCCCC-CCHHHHHHHHHHHHHcC
Confidence 322222 3567776644344444555554 3455667888899998 8776555444432 23566777777778888
Q ss_pred CCeEE
Q 013195 376 FPQVH 380 (448)
Q Consensus 376 ~~~v~ 380 (448)
.+.+.
T Consensus 163 a~~i~ 167 (513)
T PRK00915 163 ATTIN 167 (513)
T ss_pred CCEEE
Confidence 77654
No 202
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=84.84 E-value=1.9 Score=36.92 Aligned_cols=67 Identities=19% Similarity=0.328 Sum_probs=41.9
Q ss_pred EEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccc
Q 013195 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (448)
Q Consensus 62 ~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~ 136 (448)
-|+-+.|---+||.| +.|..++.++..||++++ |=.||....+.+.++-++.-++...|-+|-|.-+
T Consensus 23 dIEi~a~~sP~YDaE-------rfgI~~v~sPRhADiLlV-TG~vT~~~~e~lkk~Yea~PePKiViA~GaCa~~ 89 (148)
T COG3260 23 DIEILAALSPRYDAE-------RFGIKVVNSPRHADILLV-TGAVTRQMREPLKKAYEAMPEPKIVIAVGACALS 89 (148)
T ss_pred eEEEeeccCcccchH-------HheeEEeCCCccccEEEE-eccccHHHHHHHHHHHHhCCCCcEEEEEcccccC
Confidence 344456666778854 579999999999999999 5567765444444444443222222336666443
No 203
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=84.81 E-value=56 Score=34.41 Aligned_cols=143 Identities=14% Similarity=0.106 Sum_probs=82.6
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEecCCCCC-CCCCCCCHHHHHHHHHHhCCCCCc-ceEEE----ee-cCCcChhHHH
Q 013195 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGS-TMLRI----GM-TNPPFILEHL 292 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~y-g~d~~~~l~~ll~~l~~~~~~~~~-~~iri----~~-~~p~~i~~~l 292 (448)
..+.++.+.-+..+.+.|+..|.+.|.-++.. .+-...+-.+.++.+.+..+.... .+.|. ++ ..|+++.+..
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~f 100 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELF 100 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHH
Confidence 56788989999999999999998865433211 000113347888888775441000 11121 11 1233333322
Q ss_pred HHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEE--EeCCCCCHHHHHHHHHH
Q 013195 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII--CGFPGETDEDFNQTVNL 370 (448)
Q Consensus 293 ~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~I--vG~PgET~ed~~~tl~~ 370 (448)
+....+. + ...+++.. +.|+ .+.+...++.+++. |..+...+- ++ |-.|.+.+.+..+.
T Consensus 101 --v~~A~~~-G-vd~irif~-~lnd-----------~~n~~~~i~~ak~~--G~~v~~~i~~t~~-p~~t~e~~~~~a~~ 161 (467)
T PRK14041 101 --VKKVAEY-G-LDIIRIFD-ALND-----------IRNLEKSIEVAKKH--GAHVQGAISYTVS-PVHTLEYYLEFARE 161 (467)
T ss_pred --HHHHHHC-C-cCEEEEEE-eCCH-----------HHHHHHHHHHHHHC--CCEEEEEEEeccC-CCCCHHHHHHHHHH
Confidence 2222232 2 34555543 5555 34567788888888 766654442 34 66778888888888
Q ss_pred HHhcCCCeEEE
Q 013195 371 IKEYKFPQVHI 381 (448)
Q Consensus 371 i~~l~~~~v~i 381 (448)
+.+.+.+.+.+
T Consensus 162 l~~~Gad~I~i 172 (467)
T PRK14041 162 LVDMGVDSICI 172 (467)
T ss_pred HHHcCCCEEEE
Confidence 88888776544
No 204
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=84.06 E-value=43 Score=32.51 Aligned_cols=143 Identities=12% Similarity=0.126 Sum_probs=85.5
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEecCCCC--CCCCCCCCHHHHHHHHHHhCCCC-CcceEEE----ee-cCCcChhHH
Q 013195 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGA--YGRDIGVNLPILLNAIVAELPPD-GSTMLRI----GM-TNPPFILEH 291 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~--yg~d~~~~l~~ll~~l~~~~~~~-~~~~iri----~~-~~p~~i~~~ 291 (448)
..+.++.++-+..|.+.|+..|.+...-.+. ++. ...+-.+.++.+.+..+.. -..+.|- ++ ..|..+.+.
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~-~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~ 95 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRF-LNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVEL 95 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccc-cCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHH
Confidence 5688888898999999999999886422100 100 0122356777777654311 1122221 11 134433333
Q ss_pred HHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeC-CCCCHHHHHHHHHH
Q 013195 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQTVNL 370 (448)
Q Consensus 292 l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~-PgET~ed~~~tl~~ 370 (448)
. +....+. + ...+++.. +.|+ .+...+.++.+++. |..+...+..-+ +.-|++.+.+.++.
T Consensus 96 d--i~~~~~~-g-~~~iri~~-~~~~-----------~~~~~~~i~~ak~~--G~~v~~~i~~~~~~~~~~~~~~~~~~~ 157 (275)
T cd07937 96 F--VEKAAKN-G-IDIFRIFD-ALND-----------VRNLEVAIKAVKKA--GKHVEGAICYTGSPVHTLEYYVKLAKE 157 (275)
T ss_pred H--HHHHHHc-C-CCEEEEee-cCCh-----------HHHHHHHHHHHHHC--CCeEEEEEEecCCCCCCHHHHHHHHHH
Confidence 2 3333333 2 34555543 2232 57889999999999 987776665422 55678889999999
Q ss_pred HHhcCCCeEEE
Q 013195 371 IKEYKFPQVHI 381 (448)
Q Consensus 371 i~~l~~~~v~i 381 (448)
+.+++.+.+.+
T Consensus 158 ~~~~Ga~~i~l 168 (275)
T cd07937 158 LEDMGADSICI 168 (275)
T ss_pred HHHcCCCEEEE
Confidence 99999887655
No 205
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=83.17 E-value=2.4 Score=38.57 Aligned_cols=75 Identities=17% Similarity=0.315 Sum_probs=42.1
Q ss_pred eEEEEec--CCccChhHHHHHHH---HHHhCCCe-eecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEcc
Q 013195 60 TIYMKTF--GCSHNQSDSEYMAG---QLSAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGC 133 (448)
Q Consensus 60 ~~~~~t~--GC~~N~~dse~~~~---~L~~~G~~-~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc 133 (448)
.++..++ || +-.|.+.+.. .+++.|.. .+..+..||+++| |=+|+.+..+.+.++-++..+....|.+|-|
T Consensus 34 Slw~~~~~~~C--C~iE~~~~~~~~yD~eRfGi~~~~~sPR~ADvllV-tG~VT~~m~~~l~~~yeqmp~pk~VIAvGsC 110 (186)
T PRK14814 34 SLWPYPFATAC--CGIEYMSTACSDYDIARFGAERPSFSPRQADMILV-LGTITYKMAPVLRQIYDQMAEPKFVISVGAC 110 (186)
T ss_pred CCceeeeCCcc--HHHHHHHhcCccccHHHhCccccCCCcccceEEEE-eccCchhhHHHHHHHHHhcCCCCeEEEeccc
Confidence 3444444 46 4444433332 24556764 4677899999999 6688776444444444443333333447778
Q ss_pred cccc
Q 013195 134 VPQG 137 (448)
Q Consensus 134 ~a~~ 137 (448)
..+.
T Consensus 111 A~~G 114 (186)
T PRK14814 111 ASSG 114 (186)
T ss_pred cccC
Confidence 6543
No 206
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=82.28 E-value=58 Score=32.70 Aligned_cols=162 Identities=15% Similarity=0.180 Sum_probs=100.0
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEec-----CCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSE-----DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~-----~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~ 293 (448)
...+.+++++-++.|.+.|+..|.+.-. ..+.||... ..-.+.++.+.+..+ ...+.. ++.|..-+. +
T Consensus 20 ~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~-~~~~e~i~~~~~~~~---~~~~~~-ll~pg~~~~--~ 92 (337)
T PRK08195 20 HQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGA-HTDEEYIEAAAEVVK---QAKIAA-LLLPGIGTV--D 92 (337)
T ss_pred CccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCC-CCHHHHHHHHHHhCC---CCEEEE-EeccCcccH--H
Confidence 4568999999999999999999988521 122233321 123567777766543 233332 133422111 2
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHh
Q 013195 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (448)
Q Consensus 294 el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~ 373 (448)
++......+ ...+.+.. +.++ .+...+.++.+++. |..+...++... .-+++.+.+.++.+.+
T Consensus 93 dl~~a~~~g--vd~iri~~-~~~e-----------~~~~~~~i~~ak~~--G~~v~~~l~~a~-~~~~e~l~~~a~~~~~ 155 (337)
T PRK08195 93 DLKMAYDAG--VRVVRVAT-HCTE-----------ADVSEQHIGLAREL--GMDTVGFLMMSH-MAPPEKLAEQAKLMES 155 (337)
T ss_pred HHHHHHHcC--CCEEEEEE-ecch-----------HHHHHHHHHHHHHC--CCeEEEEEEecc-CCCHHHHHHHHHHHHh
Confidence 243333332 34555554 2222 35678999999999 999988888774 5688999999999999
Q ss_pred cCCCeEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHHHHH
Q 013195 374 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414 (448)
Q Consensus 374 l~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~ 414 (448)
++.+.+++- ---| ...++...++.+.+.+..
T Consensus 156 ~Ga~~i~i~---DT~G-------~~~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 156 YGAQCVYVV---DSAG-------ALLPEDVRDRVRALRAAL 186 (337)
T ss_pred CCCCEEEeC---CCCC-------CCCHHHHHHHHHHHHHhc
Confidence 998876542 1111 234566677777776543
No 207
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=81.56 E-value=18 Score=34.97 Aligned_cols=143 Identities=13% Similarity=0.101 Sum_probs=81.7
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (448)
...++.+.+++.++.+.+.|..-|-+-++ .-+.+....+..+++.+.+.. ...+.+.+.+|.-+.. ..+
T Consensus 19 ~~~~d~~~i~~~A~~~~~~GAdiIDVg~~---~~~~eE~~r~~~~v~~l~~~~----~~plsIDT~~~~v~ea----aL~ 87 (261)
T PRK07535 19 IEAKDAAFIQKLALKQAEAGADYLDVNAG---TAVEEEPETMEWLVETVQEVV----DVPLCIDSPNPAAIEA----GLK 87 (261)
T ss_pred HHcCCHHHHHHHHHHHHHCCCCEEEECCC---CCchhHHHHHHHHHHHHHHhC----CCCEEEeCCCHHHHHH----HHH
Confidence 56788999999999999999887766443 222221234566667765532 2457777666542211 111
Q ss_pred HHhCCCcccccccccCCCCHHHHHhcC-------------CC--CC----HHHHHHHHHHHHHhCCCC---EEEEEEEEe
Q 013195 298 VLRHPCVYSFLHVPVQSGSDAVLSAMN-------------RE--YT----LSDFRTVVDTLIELVPGM---QIATDIICG 355 (448)
Q Consensus 298 l~~~~~~~~~l~iglES~s~~vLk~m~-------------R~--~t----~e~~~~~i~~ir~~~pgi---~i~~~~IvG 355 (448)
......+.+.++..-+. .++++..+. ++ .+ .+.+.+.++.+.++ |+ .+..|=.+|
T Consensus 88 ~~~G~~iINsIs~~~~~-~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~--GI~~~~IilDPgi~ 164 (261)
T PRK07535 88 VAKGPPLINSVSAEGEK-LEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEY--GIPPEDIYIDPLVL 164 (261)
T ss_pred hCCCCCEEEeCCCCCcc-CHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHc--CCCHhHEEEeCCCC
Confidence 11112233333322111 233332211 11 12 35567777778888 88 788999999
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 013195 356 FPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 356 ~PgET~ed~~~tl~~i~~l 374 (448)
+.|-+.+...++++.++.+
T Consensus 165 ~~~~~~~~~~~~l~~i~~l 183 (261)
T PRK07535 165 PLSAAQDAGPEVLETIRRI 183 (261)
T ss_pred cccCChHHHHHHHHHHHHH
Confidence 7787777776666665554
No 208
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=81.37 E-value=29 Score=33.89 Aligned_cols=147 Identities=10% Similarity=0.097 Sum_probs=87.3
Q ss_pred ccccCHHHHHHHHHHHH-HCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCc-ceEEEeecCCcChhHHHHHH
Q 013195 218 LGSYTVESLVGRVRTVI-ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS-TMLRIGMTNPPFILEHLKEI 295 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~-~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~-~~iri~~~~p~~i~~~l~el 295 (448)
-...+.++-++-++.|. +.|+++|.+.. +..+.+ -.+.++++.+.-...+. ..+++..+-+. .. .+
T Consensus 13 ~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~---~~~s~~----e~~av~~~~~~~~~~~~~~~~~~~a~~~~--~~---~~ 80 (280)
T cd07945 13 GVSFSPSEKLNIAKILLQELKVDRIEVAS---ARVSEG----EFEAVQKIIDWAAEEGLLDRIEVLGFVDG--DK---SV 80 (280)
T ss_pred CCccCHHHHHHHHHHHHHHhCCCEEEecC---CCCCHH----HHHHHHHHHHHhhhhccccCcEEEEecCc--HH---HH
Confidence 35678999999999875 45999998853 222221 12555555432100000 01233222222 11 23
Q ss_pred HHHHhCCCcccccccccCCCCHHHH-HhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEE-eCC-CCCHHHHHHHHHH
Q 013195 296 AEVLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIIC-GFP-GETDEDFNQTVNL 370 (448)
Q Consensus 296 ~~l~~~~~~~~~l~iglES~s~~vL-k~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~Iv-G~P-gET~ed~~~tl~~ 370 (448)
...... + ...+++.+ |.|+.-. +.+|+. ...+++.+.++.+++. |+.+..++.- |-| .-+++.+.+.++.
T Consensus 81 ~~A~~~-g-~~~i~i~~-~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~--G~~v~~~~~d~~~~~r~~~~~~~~~~~~ 155 (280)
T cd07945 81 DWIKSA-G-AKVLNLLT-KGSLKHCTEQLRKTPEEHFADIREVIEYAIKN--GIEVNIYLEDWSNGMRDSPDYVFQLVDF 155 (280)
T ss_pred HHHHHC-C-CCEEEEEE-eCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhC--CCEEEEEEEeCCCCCcCCHHHHHHHHHH
Confidence 333332 2 46788877 5555444 666654 4567788888999988 8888777764 223 3467888888888
Q ss_pred HHhcCCCeEEE
Q 013195 371 IKEYKFPQVHI 381 (448)
Q Consensus 371 i~~l~~~~v~i 381 (448)
+.+++.+.+.+
T Consensus 156 ~~~~G~~~i~l 166 (280)
T cd07945 156 LSDLPIKRIML 166 (280)
T ss_pred HHHcCCCEEEe
Confidence 88888887654
No 209
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=80.55 E-value=58 Score=31.55 Aligned_cols=148 Identities=16% Similarity=0.059 Sum_probs=83.7
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChh-HHHHHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL-EHLKEIAE 297 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~-~~l~el~~ 297 (448)
...+.++.++-++.|.+.|++.|.+... ..+. .-.+.++.+.+... ......-+....+..+. .....+..
T Consensus 15 ~~~s~e~k~~i~~~L~~~Gv~~IE~G~~---~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~ 86 (273)
T cd07941 15 ISFSVEDKLRIARKLDELGVDYIEGGWP---GSNP----KDTEFFARAKKLKL-KHAKLAAFGSTRRAGVKAEEDPNLQA 86 (273)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecCC---cCCH----HHHHHHHHHHHcCC-CCcEEEEEecccccCCCccchHHHHH
Confidence 4678999999999999999999998331 1111 12444555544210 01111111111122121 11112333
Q ss_pred HHhCCCcccccccccCCCCHH-HHHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeC-CC--CCHHHHHHHHHHH
Q 013195 298 VLRHPCVYSFLHVPVQSGSDA-VLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGF-PG--ETDEDFNQTVNLI 371 (448)
Q Consensus 298 l~~~~~~~~~l~iglES~s~~-vLk~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~-Pg--ET~ed~~~tl~~i 371 (448)
+...+ ...+++.+ |.|+. ..+.+++. ...+.+.+.++.+++. |+.+..+.+ .| .+ .+.+.+.+.++.+
T Consensus 87 a~~~g--~~~i~i~~-~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~--G~~v~~~~~-~~~d~~~~~~~~~~~~~~~~ 160 (273)
T cd07941 87 LLEAG--TPVVTIFG-KSWDLHVTEALGTTLEENLAMIRDSVAYLKSH--GREVIFDAE-HFFDGYKANPEYALATLKAA 160 (273)
T ss_pred HHhCC--CCEEEEEE-cCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEeEE-eccccCCCCHHHHHHHHHHH
Confidence 33332 45666654 45554 44666665 5677888999999999 988777533 33 22 3566667777777
Q ss_pred HhcCCCeEE
Q 013195 372 KEYKFPQVH 380 (448)
Q Consensus 372 ~~l~~~~v~ 380 (448)
.+.+.+.+.
T Consensus 161 ~~~g~~~i~ 169 (273)
T cd07941 161 AEAGADWLV 169 (273)
T ss_pred HhCCCCEEE
Confidence 888887653
No 210
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=79.95 E-value=5.2 Score=36.19 Aligned_cols=68 Identities=18% Similarity=0.361 Sum_probs=39.7
Q ss_pred ecCCccChhHHHHHHHHH-----HhCCCe-eecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEcccccc
Q 013195 65 TFGCSHNQSDSEYMAGQL-----SAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137 (448)
Q Consensus 65 t~GC~~N~~dse~~~~~L-----~~~G~~-~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~ 137 (448)
+.|| .|.|.++... +..|.. .+..+..||+++| +=+|+.+....+..+-+...+....|.+|.|....
T Consensus 41 ~~sC----C~iE~~a~~~~~yDi~RfGi~~~~~sPR~aDillV-eG~VT~~m~~~l~~~~e~~p~pk~VIAvGaCA~~G 114 (180)
T PRK14820 41 ATSC----CGIEFMATMASHYDLARFGSERPSFSPRQADMLMV-MGTIAKKMAPVLKQVYLQMAEPRWVVAVGACASSG 114 (180)
T ss_pred cccH----HHHHHHHhcCccccHHHhCccccCCCCccceEEEE-EecCCcccHHHHHHHHHhcCCCCeEEEEecccccC
Confidence 4477 8888877543 445653 4567899999999 55777654333222222222222234588886543
No 211
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=78.17 E-value=7.2 Score=37.52 Aligned_cols=141 Identities=13% Similarity=0.152 Sum_probs=77.4
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC-----CCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~-----~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l 292 (448)
.+..+++.+++.++.+.+.|..-|-+-++.+....... ..++..+++.+.+.. ...+.+.+.+|.-+.
T Consensus 18 ~~~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~----~~piSIDT~~~~v~~--- 90 (258)
T cd00423 18 GKFLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP----DVPISVDTFNAEVAE--- 90 (258)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC----CCeEEEeCCcHHHHH---
Confidence 45578999999999999999988877654432221110 024555666665432 345777766654222
Q ss_pred HHHHHHHhC-CCcccccccccCCCCHHHHHhcCC-----------C------------CC----HHHHHHHHHHHHHhCC
Q 013195 293 KEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNR-----------E------------YT----LSDFRTVVDTLIELVP 344 (448)
Q Consensus 293 ~el~~l~~~-~~~~~~l~iglES~s~~vLk~m~R-----------~------------~t----~e~~~~~i~~ir~~~p 344 (448)
+.++. ..+.+.+. -+..++++++.+.+ + .. .+.+.+.++.+.++
T Consensus 91 ----aaL~~g~~iINdis--~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 162 (258)
T cd00423 91 ----AALKAGADIINDVS--GGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEA-- 162 (258)
T ss_pred ----HHHHhCCCEEEeCC--CCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHc--
Confidence 11111 11222221 11222333322111 0 01 35667777778888
Q ss_pred CC---EEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 013195 345 GM---QIATDIICGFPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 345 gi---~i~~~~IvG~PgET~ed~~~tl~~i~~l 374 (448)
|+ .+..|-.+||.. +.++...+++.+..+
T Consensus 163 Gi~~~~IilDPg~g~~k-~~~~~~~~l~~i~~~ 194 (258)
T cd00423 163 GIPPEDIILDPGIGFGK-TEEHNLELLRRLDAF 194 (258)
T ss_pred CCCHHHEEEeCCCCccC-CHHHHHHHHHHHHHH
Confidence 75 678899999887 555544555555544
No 212
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=76.38 E-value=80 Score=33.81 Aligned_cols=150 Identities=16% Similarity=0.020 Sum_probs=82.6
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHh-CCCCCcceEEEeecCCcChhH-HHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE-LPPDGSTMLRIGMTNPPFILE-HLKEI 295 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~-~~~~~~~~iri~~~~p~~i~~-~l~el 295 (448)
-.+.+.++.++-++.|.+.|++.|..... ..+.+ -.+.++.+.+. +. ......+.......+.. ....+
T Consensus 21 g~~~s~e~Kl~ia~~L~~~Gvd~IEvG~p---~as~~----d~~~~~~i~~~~l~--~~~i~~~~~~~~~~i~~~~d~~~ 91 (524)
T PRK12344 21 GISFSVEDKLRIARKLDELGVDYIEGGWP---GSNPK----DTEFFKRAKELKLK--HAKLAAFGSTRRAGVSAEEDPNL 91 (524)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcCC---cCChh----HHHHHHHHHHhCCC--CcEEEEEeeccccCCCcccHHHH
Confidence 35788999999999999999999987321 11111 14556666542 11 11122222122222210 01113
Q ss_pred HHHHhCCCcccccccccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCC--CCCHHHHHHHHHHH
Q 013195 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFP--GETDEDFNQTVNLI 371 (448)
Q Consensus 296 ~~l~~~~~~~~~l~iglES~s~~vLk~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~P--gET~ed~~~tl~~i 371 (448)
..+... + ...+++.+-+.+-...+.+++. ...+.+.+.++.+++. |..+..+...-+. -.+.+-+.+.++.+
T Consensus 92 e~~~~~-g-~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~v~~~~e~~~Da~r~d~~~l~~~~~~~ 167 (524)
T PRK12344 92 QALLDA-G-TPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAH--GREVIFDAEHFFDGYKANPEYALATLKAA 167 (524)
T ss_pred HHHHhC-C-CCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEccccccccccCCHHHHHHHHHHH
Confidence 333332 2 4567776644333344566653 4667778888999998 8766543331111 13355556667777
Q ss_pred HhcCCCeEE
Q 013195 372 KEYKFPQVH 380 (448)
Q Consensus 372 ~~l~~~~v~ 380 (448)
.+.+.+.+.
T Consensus 168 ~~~Gad~i~ 176 (524)
T PRK12344 168 AEAGADWVV 176 (524)
T ss_pred HhCCCCeEE
Confidence 788888765
No 213
>PRK09389 (R)-citramalate synthase; Provisional
Probab=75.93 E-value=1.1e+02 Score=32.37 Aligned_cols=142 Identities=13% Similarity=0.010 Sum_probs=87.5
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (448)
-.+.+.++.++-++.|.+.|++.|.... +..+.+ =.+.++.+.+.- ....+.. +.... .+. +..
T Consensus 18 g~~~s~e~K~~ia~~L~~~Gv~~IE~G~---p~~~~~----d~e~v~~i~~~~---~~~~i~a-~~r~~--~~d---i~~ 81 (488)
T PRK09389 18 GVSLTPEEKLEIARKLDELGVDVIEAGS---AITSEG----EREAIKAVTDEG---LNAEICS-FARAV--KVD---IDA 81 (488)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEeC---CcCCHH----HHHHHHHHHhcC---CCcEEEe-ecccC--HHH---HHH
Confidence 3578999999999999999999998853 222221 146667776532 1222221 12221 222 333
Q ss_pred HHhCCCcccccccccCCCCHHHH-HhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 013195 298 VLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 298 l~~~~~~~~~l~iglES~s~~vL-k~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l 374 (448)
+...+ ...+++.+ +.|+.-+ ..+++. ...+.+.+.++.+++. |+.+..+..-+. --+.+-+.+.++.+.+.
T Consensus 82 a~~~g--~~~v~i~~-~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--g~~v~~~~ed~~-r~~~~~l~~~~~~~~~~ 155 (488)
T PRK09389 82 ALECD--VDSVHLVV-PTSDLHIEYKLKKTREEVLETAVEAVEYAKDH--GLIVELSGEDAS-RADLDFLKELYKAGIEA 155 (488)
T ss_pred HHhCC--cCEEEEEE-ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEeeCC-CCCHHHHHHHHHHHHhC
Confidence 33332 45777777 5555544 444543 3456677778888888 888887777653 44567777888888888
Q ss_pred CCCeEEE
Q 013195 375 KFPQVHI 381 (448)
Q Consensus 375 ~~~~v~i 381 (448)
+.+.+.+
T Consensus 156 Ga~~i~l 162 (488)
T PRK09389 156 GADRICF 162 (488)
T ss_pred CCCEEEE
Confidence 8887543
No 214
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=75.33 E-value=68 Score=34.07 Aligned_cols=145 Identities=10% Similarity=-0.047 Sum_probs=79.9
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEE-EeecCCcChhHHHHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR-IGMTNPPFILEHLKEIA 296 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~ir-i~~~~p~~i~~~l~el~ 296 (448)
-.+.+.++-++-++.|.+.|++.|.... ...+.. + .+.++++.+... ...+. +...+..++ +...
T Consensus 17 g~~~s~e~K~~ia~~L~~~GV~~IEvG~---p~~s~~---d-~e~v~~i~~~~~---~~~i~al~r~~~~di----d~a~ 82 (494)
T TIGR00973 17 GASLTVEEKLQIALALERLGVDIIEAGF---PVSSPG---D-FEAVQRIARTVK---NPRVCGLARCVEKDI----DAAA 82 (494)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEEC---CCCCHH---H-HHHHHHHHHhCC---CCEEEEEcCCCHHhH----HHHH
Confidence 3568899999999999999999998632 222211 1 355577755433 12222 211123222 2222
Q ss_pred HHHhCCCcccccccccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 013195 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 297 ~l~~~~~~~~~l~iglES~s~~vLk~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l 374 (448)
+.+...+ ...+++-+=+.+-.+...+++. ...+.+.++++.+++. |..+..+..-+.. -+.+.+.+.++.+.+.
T Consensus 83 ~al~~~~-~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~f~~Ed~~r-~d~~~l~~~~~~~~~~ 158 (494)
T TIGR00973 83 EALKPAE-KFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNF--TDDVEFSCEDAGR-TEIPFLARIVEAAINA 158 (494)
T ss_pred HhccccC-CCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEcCCCCC-CCHHHHHHHHHHHHHc
Confidence 2222222 3466665534333444555543 3445566788888888 7655444443332 2356666677777777
Q ss_pred CCCeEE
Q 013195 375 KFPQVH 380 (448)
Q Consensus 375 ~~~~v~ 380 (448)
+.+.+.
T Consensus 159 Ga~~i~ 164 (494)
T TIGR00973 159 GATTIN 164 (494)
T ss_pred CCCEEE
Confidence 776544
No 215
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.07 E-value=5.6 Score=36.80 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=19.8
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeecC
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN 92 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~ 92 (448)
++++.+.| +.-..=++.++..|+.+||++++.
T Consensus 118 a~ri~vlT---PY~~evn~~e~ef~~~~Gfeiv~~ 149 (238)
T COG3473 118 AQRISVLT---PYIDEVNQREIEFLEANGFEIVDF 149 (238)
T ss_pred cceEEEec---cchhhhhhHHHHHHHhCCeEEEEe
Confidence 45665554 222233455666788999999875
No 216
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=74.67 E-value=61 Score=31.93 Aligned_cols=50 Identities=10% Similarity=0.031 Sum_probs=33.2
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~ 268 (448)
|.++..++...+..+.+.|+++|..+.+|...-+......-.+|++.|..
T Consensus 92 r~~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~ 141 (296)
T PRK09432 92 IDATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKS 141 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHH
Confidence 34578888899999999999999888777554322111223466665543
No 217
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=74.34 E-value=56 Score=32.09 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=71.8
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC--CCHHHHHHHHHHhCCCCCcceEEEeecCCcChhH---HHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE---HLK 293 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~--~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~---~l~ 293 (448)
+-++..++.+.++.+.+.|+++|.++.+|....+...+ ..-.+|++.++.... +...+... .+|+.-.+ ...
T Consensus 87 ~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~--~~f~i~~A-~~Pe~h~~s~~~~~ 163 (291)
T COG0685 87 RDRNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRG--GIFDIGVA-AYPEGHPESKDVKE 163 (291)
T ss_pred cCCCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHhcC--CeEEEEEE-eCCCCCccchhhHH
Confidence 34578899999999999999999988878751111111 355778887775432 22333333 46653322 112
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeC
Q 013195 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356 (448)
Q Consensus 294 el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~ 356 (448)
++..+.+. +++|-+.++..+ -++.+.+.+..++++.+ |+ ..-++.|+
T Consensus 164 d~~~lkrK----------v~aGAd~~iTQ~--~fd~e~~~~~~~~~~~~--g~--~~pI~~Gi 210 (291)
T COG0685 164 DIKRLKRK----------VDAGADFFITQF--FFDVEAFERFAERVRAA--GI--DIPIIPGI 210 (291)
T ss_pred HHHHHHHH----------HhcchHHHHHHH--ccCHHHHHHHHHHHHhc--CC--CCCeeecc
Confidence 23333221 336666666443 46889999999999998 65 33445544
No 218
>PRK13292 trifunctional NADH dehydrogenase I subunit B/C/D; Provisional
Probab=74.29 E-value=5.6 Score=44.41 Aligned_cols=76 Identities=25% Similarity=0.345 Sum_probs=48.1
Q ss_pred eEEEEecCCccChhHHHHHHHH-----HHhCCCe-eecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEcc
Q 013195 60 TIYMKTFGCSHNQSDSEYMAGQ-----LSAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGC 133 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~~-----L~~~G~~-~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc 133 (448)
.+++.++||.= .|.|.++.. +++.|++ .+..+..||+++| |=+|+.+....+.++-++.-++...|.+|.|
T Consensus 23 s~w~~~~~~~c--c~~E~~~~~~~~~D~~r~G~~~~~~sPr~aD~llv-~G~vt~~~~~~l~~~~~~~p~pk~via~G~C 99 (788)
T PRK13292 23 SLWPMFFGLSC--CFVEMMTSFTSRYDISRFGAEVLRGTPREADLMVI-AGTVFKKMAPSILRLYEQMAEPKWVISMGSC 99 (788)
T ss_pred CCcceecCCcc--HHHHHHHhcCCcCCHHHcCCCccCCCcccceEEEE-ecCCcHhhHHHHHHHHHhCCCCCEEEEeccc
Confidence 45666666522 777776543 5667886 4788999999999 6688776555544444443333333558888
Q ss_pred ccccc
Q 013195 134 VPQGS 138 (448)
Q Consensus 134 ~a~~~ 138 (448)
..+..
T Consensus 100 a~~GG 104 (788)
T PRK13292 100 ANSGG 104 (788)
T ss_pred ccCCC
Confidence 77643
No 219
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=73.10 E-value=6.1 Score=35.77 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=36.6
Q ss_pred hHHHHHHHH-----HHhCCCeee-cCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCC--EEEEccccc
Q 013195 73 SDSEYMAGQ-----LSAFGYALT-DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVAGCVPQ 136 (448)
Q Consensus 73 ~dse~~~~~-----L~~~G~~~~-~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~--vVvgGc~a~ 136 (448)
.|.|.++.. |++.|+..+ ..+..||+++| |=+|+.+... +...+.+.. +++| |.+|-|..+
T Consensus 47 C~iE~~a~~~~~yDleRfGi~~~~~sPR~ADillV-eG~VT~~m~~-~l~~~~e~~-p~pK~VIAvGaCA~~ 115 (181)
T PRK14817 47 CGMEYMTMASARYDSDRFGAAMPRFSPRQADLLMV-VGTVNCKQAP-ILQRVYEQM-ADPKWVMAFGVCASS 115 (181)
T ss_pred HHHHHHHhcCccccHHHhceeeccCCCcceeEEEE-EecCCccchH-HHHHHHHHc-ccCCEEEEecccccc
Confidence 777765542 455676664 78999999999 5577765433 333333332 2333 447777554
No 220
>COG2014 Uncharacterized conserved protein [Function unknown]
Probab=72.69 E-value=6.9 Score=36.23 Aligned_cols=57 Identities=18% Similarity=0.245 Sum_probs=39.5
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccccchh-hhcCCccEEEcCCc
Q 013195 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIVGVQQ 154 (448)
Q Consensus 94 ~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e-~~~~~~d~vvg~~~ 154 (448)
.+.|+++++..|.-+.+-+. ++.++ +..+-||+.|+.+|..|| +....++++.|..=
T Consensus 163 P~~Dvii~SaStlvN~T~d~---~Ld~a-k~ak~vvl~GPTa~l~pe~f~~~gvt~iag~kI 220 (250)
T COG2014 163 PEVDVIIASASTLVNGTLDM---ILDRA-KKAKLVVLTGPTAQLLPEFFKGTGVTHIAGTKI 220 (250)
T ss_pred ccccEEEEechhhhcCcHHH---HHhhh-ccCcEEEEeCCCcccchhHHhccCcceEEeeee
Confidence 45799999877776665433 33333 233568999999999999 45666677877754
No 221
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=72.25 E-value=7.5 Score=45.54 Aligned_cols=76 Identities=17% Similarity=0.261 Sum_probs=53.0
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcC
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~ 124 (448)
.+|-+-|..=-..----..+.-.|+.+||++++- ..+||+|.+ |+..+.. ...+...++.+++.
T Consensus 733 gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~~diVgL-S~Lmt~t-~~~m~~vi~~L~~~ 810 (1178)
T TIGR02082 733 GKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHNADVIGL-SGLITPS-LDEMKEVAEEMNRR 810 (1178)
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEE-cCccccc-HHHHHHHHHHHHhc
Confidence 3555544443444444566778899999999764 468999999 6665544 45678888888877
Q ss_pred C--CCEEEEccccc
Q 013195 125 K--KPLVVAGCVPQ 136 (448)
Q Consensus 125 ~--~~vVvgGc~a~ 136 (448)
| .+|+|||-..+
T Consensus 811 g~~v~v~vGGa~~s 824 (1178)
T TIGR02082 811 GITIPLLIGGAATS 824 (1178)
T ss_pred CCCceEEEeccccc
Confidence 6 57999995443
No 222
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=71.93 E-value=1.6e+02 Score=32.17 Aligned_cols=142 Identities=13% Similarity=0.142 Sum_probs=70.6
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCC-CCCCCHHHHHHHHHHhCCCCC-cceEE----Eeec-CCcChhHHH
Q 013195 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DIGVNLPILLNAIVAELPPDG-STMLR----IGMT-NPPFILEHL 292 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~-d~~~~l~~ll~~l~~~~~~~~-~~~ir----i~~~-~p~~i~~~l 292 (448)
..+.++.+.-+..+.+.|+..|.+.|.-++.... -...+-.+.|+.+.+.++... ..+.| ++|. .|+++.+..
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~ 101 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKF 101 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHH
Confidence 4577888888888888899999887643322100 011344667777776544100 11222 1121 243333322
Q ss_pred HHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE-eCCCCCHHHHHHHHHHH
Q 013195 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC-GFPGETDEDFNQTVNLI 371 (448)
Q Consensus 293 ~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~Iv-G~PgET~ed~~~tl~~i 371 (448)
+....++ + ...+.+.. +.|+ ...+...++.+++. |..+...+-+ +-|--|.+.+.+.++-+
T Consensus 102 --v~~A~~~-G-vd~irif~-~lnd-----------~~n~~~~i~~ak~~--G~~v~~~i~~t~~p~~t~~~~~~~a~~l 163 (592)
T PRK09282 102 --VEKAAEN-G-IDIFRIFD-ALND-----------VRNMEVAIKAAKKA--GAHVQGTISYTTSPVHTIEKYVELAKEL 163 (592)
T ss_pred --HHHHHHC-C-CCEEEEEE-ecCh-----------HHHHHHHHHHHHHc--CCEEEEEEEeccCCCCCHHHHHHHHHHH
Confidence 2222222 2 23344322 3333 13455566666666 6555444422 12555666666666666
Q ss_pred HhcCCCeE
Q 013195 372 KEYKFPQV 379 (448)
Q Consensus 372 ~~l~~~~v 379 (448)
.+.+.+.+
T Consensus 164 ~~~Gad~I 171 (592)
T PRK09282 164 EEMGCDSI 171 (592)
T ss_pred HHcCCCEE
Confidence 66665544
No 223
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=71.60 E-value=88 Score=32.49 Aligned_cols=157 Identities=13% Similarity=0.157 Sum_probs=97.8
Q ss_pred eeeCccC-CCccccCHHHHHHHHHHHHHC---CCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecC
Q 013195 209 CKTKHAR-GHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284 (448)
Q Consensus 209 C~~~~~r-g~~rsr~~e~Iv~ei~~l~~~---G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~ 284 (448)
|-.+... |...--+.++|-+-++.+.++ +...|.|+|+..+. ..+|.++++...+. +...+.+. +|
T Consensus 78 CFa~A~~ag~vYEpt~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTv-----r~DL~eiv~~a~e~----g~~hVqin-Tn 147 (475)
T COG1964 78 CFAYAEEAGYIYEPTLEQIREMLRNLKKEHPVGANAVQFTGGEPTL-----RDDLIEIIKIAREE----GYDHVQLN-TN 147 (475)
T ss_pred CcCchhhcCcccCCCHHHHHHHHHHHHhcCCCCCceeEecCCCccc-----hhhHHHHHHHHhhc----CccEEEEc-cC
Confidence 5444322 333345688888888888775 55788888854322 24678888777653 44455554 34
Q ss_pred CcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC---CEEEEEEEEeCCCCCH
Q 013195 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG---MQIATDIICGFPGETD 361 (448)
Q Consensus 285 p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pg---i~i~~~~IvG~PgET~ 361 (448)
.-.+... .++.+-+++++ .+.+.+.+.-.+++....+ .-++..+++.++++ | +.+...++=| -.+
T Consensus 148 GirlA~~-~~~~~~l~~ag-~~tvYlsFDG~~e~~~~~~-----~~eIk~alen~r~~--g~~svVLVptl~rg---vNd 215 (475)
T COG1964 148 GIRLAFD-PEYVKKLREAG-VNTVYLSFDGVTPKTNWKN-----HWEIKQALENCRKA--GLPSVVLVPTLIRG---VND 215 (475)
T ss_pred ceeeccC-HHHHHHHHhcC-CcEEEEecCCCCCCchhhH-----hhhhHHHHHHHHhc--CCCcEEEEeehhcc---cCh
Confidence 3333222 23444455555 5788888888888876544 44566699999998 5 4555566654 467
Q ss_pred HHHHHHHHHHHhcC--CCeEEEEeceeC
Q 013195 362 EDFNQTVNLIKEYK--FPQVHISQFYPR 387 (448)
Q Consensus 362 ed~~~tl~~i~~l~--~~~v~i~~~~p~ 387 (448)
.++..-++|....- ...+++.++|--
T Consensus 216 ~~lG~iirfa~~n~dvVrgVnfQPVslt 243 (475)
T COG1964 216 HELGAIIRFALNNIDVVRGVNFQPVSLT 243 (475)
T ss_pred HHHHHHHHHHHhccccccccceEEEEEe
Confidence 78888899987552 334555555443
No 224
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=70.99 E-value=1.6e+02 Score=32.02 Aligned_cols=144 Identities=12% Similarity=0.098 Sum_probs=77.6
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCC-CCCCCHHHHHHHHHHhCCCCC-cceEE----EeecC-CcChhHHH
Q 013195 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DIGVNLPILLNAIVAELPPDG-STMLR----IGMTN-PPFILEHL 292 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~-d~~~~l~~ll~~l~~~~~~~~-~~~ir----i~~~~-p~~i~~~l 292 (448)
..+.++.+.-+..+.+.|+..|.+.|.-++.-+. -...+-.+.|+.+.+..+... ...+| +++.+ |+++.+.
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~- 101 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVER- 101 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHH-
Confidence 4567888888888888899999987653322100 012334778888877664110 01122 33332 4333322
Q ss_pred HHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE-eCCCCCHHHHHHHHHHH
Q 013195 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC-GFPGETDEDFNQTVNLI 371 (448)
Q Consensus 293 ~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~Iv-G~PgET~ed~~~tl~~i 371 (448)
..+.....+ ...+++.. +.|+ .+.+..+++.+++. |..+...+-+ +-|-.|.+.+.+.++.+
T Consensus 102 --~v~~a~~~G-id~~rifd-~lnd-----------~~~~~~ai~~ak~~--G~~~~~~i~yt~~p~~~~~~~~~~a~~l 164 (593)
T PRK14040 102 --FVERAVKNG-MDVFRVFD-AMND-----------PRNLETALKAVRKV--GAHAQGTLSYTTSPVHTLQTWVDLAKQL 164 (593)
T ss_pred --HHHHHHhcC-CCEEEEee-eCCc-----------HHHHHHHHHHHHHc--CCeEEEEEEEeeCCccCHHHHHHHHHHH
Confidence 223322222 34455542 3333 24667777777777 6654333322 34666777777777777
Q ss_pred HhcCCCeEEE
Q 013195 372 KEYKFPQVHI 381 (448)
Q Consensus 372 ~~l~~~~v~i 381 (448)
.+.+.+.+.+
T Consensus 165 ~~~Gad~i~i 174 (593)
T PRK14040 165 EDMGVDSLCI 174 (593)
T ss_pred HHcCCCEEEE
Confidence 7776665443
No 225
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=69.35 E-value=21 Score=34.06 Aligned_cols=95 Identities=14% Similarity=0.191 Sum_probs=51.3
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeecCC-----CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEc
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS-----EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAG 132 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~-----~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgG 132 (448)
.++|.+.| +....=++.+...|++.||+++... ++.++.-+ ..+.+++.++++...++--|+--
T Consensus 120 ~~RIalvT---PY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i--------~p~~i~~~~~~~~~~~aDAifis 188 (239)
T TIGR02990 120 VRRISLLT---PYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARI--------SPDCIVEAALAAFDPDADALFLS 188 (239)
T ss_pred CCEEEEEC---CCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeec--------CHHHHHHHHHHhcCCCCCEEEEe
Confidence 36777766 5788888899999999999987641 11221111 22345666666655555444334
Q ss_pred cccccchh-hhcCC---ccEEEcCCchhHHHHHHHH
Q 013195 133 CVPQGSRD-LKELE---GVSIVGVQQIDRVVEVVEE 164 (448)
Q Consensus 133 c~a~~~~e-~~~~~---~d~vvg~~~~~~i~~~l~~ 164 (448)
|-.-..-+ +..++ +.-|+...+ ..++..|+.
T Consensus 189 CTnLrt~~vi~~lE~~lGkPVlsSNq-at~W~~Lr~ 223 (239)
T TIGR02990 189 CTALRAATCAQRIEQAIGKPVVTSNQ-ATAWRCLRL 223 (239)
T ss_pred CCCchhHHHHHHHHHHHCCCEEEHHH-HHHHHHHHH
Confidence 65433222 22221 223454433 345556543
No 226
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=68.24 E-value=66 Score=31.12 Aligned_cols=150 Identities=15% Similarity=0.228 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcCh-------hHHHHHH
Q 013195 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI-------LEHLKEI 295 (448)
Q Consensus 223 ~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i-------~~~l~el 295 (448)
+..+.+-+..|.+.|++++++..-.+.. |. .+.+|.+.+...-. ....+.++ .|-.- .+..+.+
T Consensus 57 i~~~~eaL~~L~~~G~~~V~VQplhiip-G~----Ey~~l~~~v~~~~~--~F~~i~~g--~PLL~~~g~~~~~~D~~~v 127 (262)
T PF06180_consen 57 IDSPEEALAKLADEGYTEVVVQPLHIIP-GE----EYEKLRATVEAYKH--DFKKIVLG--RPLLYTMGQENSPEDYEAV 127 (262)
T ss_dssp ---HHHHHHHHHHCT--EEEEEE--SCS-SH----HHHHHHHHHHHHCC--CSSEEEEE----SCSS-----SHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCCEEEEeecceeC-cH----hHHHHHHHHHHhhc--cCCeEEec--ccccccccccCChHHHHHH
Confidence 4555566666788999999998855433 33 34566666544221 33466665 44322 3344445
Q ss_pred HHHHhCCCcccccccccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHh
Q 013195 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (448)
Q Consensus 296 ~~l~~~~~~~~~l~iglES~s~~vLk~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~ 373 (448)
.+.+... ++-.. .++.+-.|+-| +........++..-+..+.-.+....+=|+| ++++.+..+++
T Consensus 128 a~aL~~~-------~~~~~-~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~~v~vgtvEG~P-----~~~~vi~~L~~ 194 (262)
T PF06180_consen 128 AEALAEE-------FPKKR-KDEAVVLMGHGTPHPANAAYSALQAMLKKHGYPNVFVGTVEGYP-----SLEDVIARLKK 194 (262)
T ss_dssp HHHHHCC-------S-TT--TTEEEEEEE---SCHHHHHHHHHHHHHHCCT-TTEEEEETTSSS-----BHHHHHHHHHH
T ss_pred HHHHHHh-------ccccC-CCCEEEEEeCCCCCCccHHHHHHHHHHHhCCCCeEEEEEeCCCC-----CHHHHHHHHHh
Confidence 5544321 11111 23333344433 2333344444444443222344445555777 37788888899
Q ss_pred cCCCeEEEEeceeCCCCcccC
Q 013195 374 YKFPQVHISQFYPRPGTPAAR 394 (448)
Q Consensus 374 l~~~~v~i~~~~p~pGT~~~~ 394 (448)
.++..+.+.||+-..|.-+.+
T Consensus 195 ~g~k~V~L~PlMlVAGdHa~n 215 (262)
T PF06180_consen 195 KGIKKVHLIPLMLVAGDHAKN 215 (262)
T ss_dssp HT-SEEEEEEESSS--HHHHC
T ss_pred cCCCeEEEEecccccchhhhh
Confidence 999999999999999988764
No 227
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=68.04 E-value=1.2e+02 Score=29.16 Aligned_cols=138 Identities=15% Similarity=0.157 Sum_probs=84.9
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEec-----CCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSE-----DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~-----~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~ 293 (448)
...+.++.++-++.+.+.|+..|.+... ..+.++.. ...-.+.++.+.+..+ ...+... +.+..... +
T Consensus 17 ~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~-~~~~~e~i~~~~~~~~---~~~~~~~-~~~~~~~~--~ 89 (263)
T cd07943 17 HQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFA-AHTDEEYLEAAAEALK---QAKLGVL-LLPGIGTV--D 89 (263)
T ss_pred eecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCC-CCChHHHHHHHHHhcc---CCEEEEE-ecCCccCH--H
Confidence 4568899999999999999999888621 11111111 1223567777765543 2333322 22211111 2
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHh
Q 013195 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (448)
Q Consensus 294 el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~ 373 (448)
.+......+ +..+.+.+ +.|+ ...+.+.++.+++. |..+...++-.. .-+++.+.+.++.+.+
T Consensus 90 ~i~~a~~~g--~~~iri~~-~~s~-----------~~~~~~~i~~ak~~--G~~v~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (263)
T cd07943 90 DLKMAADLG--VDVVRVAT-HCTE-----------ADVSEQHIGAARKL--GMDVVGFLMMSH-MASPEELAEQAKLMES 152 (263)
T ss_pred HHHHHHHcC--CCEEEEEe-chhh-----------HHHHHHHHHHHHHC--CCeEEEEEEecc-CCCHHHHHHHHHHHHH
Confidence 233333332 45555544 3333 24678899999999 998888887665 3578888899999999
Q ss_pred cCCCeEE
Q 013195 374 YKFPQVH 380 (448)
Q Consensus 374 l~~~~v~ 380 (448)
.+.+.+.
T Consensus 153 ~G~d~i~ 159 (263)
T cd07943 153 YGADCVY 159 (263)
T ss_pred cCCCEEE
Confidence 9988654
No 228
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=67.84 E-value=1.3e+02 Score=30.08 Aligned_cols=136 Identities=20% Similarity=0.258 Sum_probs=77.8
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCC------------------CcceEEE
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD------------------GSTMLRI 280 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~------------------~~~~iri 280 (448)
...+.+..+++|+.|.+.|..-+.+.-.|.- -++.|..|.+..+.+ +...+|+
T Consensus 29 ~T~Dv~atv~QI~~L~~aGceiVRvavp~~~---------~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~g~dkiRI 99 (346)
T TIGR00612 29 DTIDIDSTVAQIRALEEAGCDIVRVTVPDRE---------SAAAFEAIKEGTNVPLVADIHFDYRLAALAMAKGVAKVRI 99 (346)
T ss_pred CchhHHHHHHHHHHHHHcCCCEEEEcCCCHH---------HHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHhccCeEEE
Confidence 3568899999999999999877776543321 123333333322211 2334554
Q ss_pred eecCCcChh--HHHHHHHHHHhCCCcccccccccCCCCH--HHHHhcCCCCCH----HHHHHHHHHHHHhCCCCEEEEEE
Q 013195 281 GMTNPPFIL--EHLKEIAEVLRHPCVYSFLHVPVQSGSD--AVLSAMNREYTL----SDFRTVVDTLIELVPGMQIATDI 352 (448)
Q Consensus 281 ~~~~p~~i~--~~l~el~~l~~~~~~~~~l~iglES~s~--~vLk~m~R~~t~----e~~~~~i~~ir~~~pgi~i~~~~ 352 (448)
||..+- +.+.++.+..+..+. -+.||+-|||= +++++.+. .+. +-..+-++.+.+. |+. |+
T Consensus 100 ---NPGNig~~e~v~~vv~~ak~~~i--pIRIGVN~GSL~~~~~~kyg~-~t~eamveSAl~~v~~le~~--~F~---di 168 (346)
T TIGR00612 100 ---NPGNIGFRERVRDVVEKARDHGK--AMRIGVNHGSLERRLLEKYGD-ATAEAMVQSALEEAAILEKL--GFR---NV 168 (346)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHCCC--CEEEecCCCCCcHHHHHHcCC-CCHHHHHHHHHHHHHHHHHC--CCC---cE
Confidence 566553 455666666666554 56688887764 44554432 233 3445555666666 543 67
Q ss_pred EEeCCCCCHHHHHHHHHHHHhc
Q 013195 353 ICGFPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 353 IvG~PgET~ed~~~tl~~i~~l 374 (448)
++-+-.-+.....+..+++.+.
T Consensus 169 viS~KsSdv~~~i~ayr~la~~ 190 (346)
T TIGR00612 169 VLSMKASDVAETVAAYRLLAER 190 (346)
T ss_pred EEEEEcCCHHHHHHHHHHHHhh
Confidence 7777665555555555555443
No 229
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=67.00 E-value=1e+02 Score=30.87 Aligned_cols=139 Identities=19% Similarity=0.239 Sum_probs=80.3
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEee---------------c
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM---------------T 283 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~---------------~ 283 (448)
...+++..+++|+.|.+.|..=+.++-++. .-++.+.+|.+.++.+-..-+.|.+ +
T Consensus 31 ~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~---------e~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~~k~RI 101 (361)
T COG0821 31 DTADVEATVAQIKALERAGCDIVRVTVPDM---------EAAEALKEIKQRLNVPLVADIHFDYRLALEAAECGVDKVRI 101 (361)
T ss_pred CcccHHHHHHHHHHHHHcCCCEEEEecCCH---------HHHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcCcceEEE
Confidence 455899999999999999987777655432 1255666665554322112222211 3
Q ss_pred CCcChh--HHHHHHHHHHhCCCcccccccccCCCC--HHHHHhcCCCCCHHHHH----HHHHHHHHhCCCCEEEEEEEEe
Q 013195 284 NPPFIL--EHLKEIAEVLRHPCVYSFLHVPVQSGS--DAVLSAMNREYTLSDFR----TVVDTLIELVPGMQIATDIICG 355 (448)
Q Consensus 284 ~p~~i~--~~l~el~~l~~~~~~~~~l~iglES~s--~~vLk~m~R~~t~e~~~----~~i~~ir~~~pgi~i~~~~IvG 355 (448)
||..+- +.+.++.+..+..+. -+.||+-+|| .+++++++.+ +.|.+. +-++.+-+. |+. +|++-
T Consensus 102 NPGNig~~~~v~~vVe~Ak~~g~--piRIGVN~GSLek~~~~ky~~p-t~ealveSAl~~a~~~e~l--~f~---~i~iS 173 (361)
T COG0821 102 NPGNIGFKDRVREVVEAAKDKGI--PIRIGVNAGSLEKRLLEKYGGP-TPEALVESALEHAELLEEL--GFD---DIKVS 173 (361)
T ss_pred CCcccCcHHHHHHHHHHHHHcCC--CEEEecccCchhHHHHHHhcCC-CHHHHHHHHHHHHHHHHHC--CCC---cEEEE
Confidence 566553 334556666655543 4566776665 5777777644 555443 333444444 433 77777
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 013195 356 FPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 356 ~PgET~ed~~~tl~~i~~l 374 (448)
.-.-+..+.-+..+.+.+.
T Consensus 174 ~K~Sdv~~~v~aYr~lA~~ 192 (361)
T COG0821 174 VKASDVQLMVAAYRLLAKR 192 (361)
T ss_pred EEcCCHHHHHHHHHHHHHh
Confidence 7776766666666655443
No 230
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=66.88 E-value=11 Score=44.18 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=52.8
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcC
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~ 124 (448)
.++-+-|..=-.-----..+.-.|+.+||++++- ...||+|.+ |+..+.. ...+...++.+++.
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~~diVgL-S~L~t~s-~~~m~~~i~~L~~~ 829 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEENADIIGL-SGLITPS-LDEMVHVAKEMERQ 829 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEE-cCcchhh-HHHHHHHHHHHHhc
Confidence 3555544444444444556778899999999764 468999999 6665543 45678888888877
Q ss_pred C--CCEEEEccccc
Q 013195 125 K--KPLVVAGCVPQ 136 (448)
Q Consensus 125 ~--~~vVvgGc~a~ 136 (448)
+ .+|++||-..+
T Consensus 830 g~~v~v~vGGa~~s 843 (1229)
T PRK09490 830 GFTIPLLIGGATTS 843 (1229)
T ss_pred CCCCeEEEEeeccc
Confidence 5 57999995444
No 231
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=66.85 E-value=1.2e+02 Score=29.26 Aligned_cols=63 Identities=19% Similarity=0.295 Sum_probs=39.1
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC---C---CCHHHHHHHHHHhCCCCCcceEEEeecCCc
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---G---VNLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~---~---~~l~~ll~~l~~~~~~~~~~~iri~~~~p~ 286 (448)
+..+.+++++.+..+.+.|+.-|-+.+..+.. |.+. . .++..+++.+.+.. ...+.+.+.+|.
T Consensus 19 ~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p-~~~~i~~~~E~~rl~~~v~~i~~~~----~~plSIDT~~~~ 87 (257)
T cd00739 19 RFLSLDKAVAHAEKMIAEGADIIDIGGESTRP-GADPVSVEEELERVIPVLEALRGEL----DVLISVDTFRAE 87 (257)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-CCCCCCHHHHHHHHHHHHHHHHhcC----CCcEEEeCCCHH
Confidence 45689999999999999999888775443322 2211 1 13444556665432 345777766664
No 232
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=66.63 E-value=1.3e+02 Score=29.34 Aligned_cols=139 Identities=15% Similarity=0.173 Sum_probs=76.5
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC---C---CHHHHHHHHHHhCCCCCcceEEEeecCCcChhHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---V---NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~---~---~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~ 291 (448)
-+..+++.++++++.+.+.|+.-|-+.++.+.. |.+.- . ++..+++.|.+.. ...+.+.+.+|..+
T Consensus 32 g~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrP-g~~~v~~eeE~~Rv~pvI~~l~~~~----~~~ISIDT~~~~va--- 103 (282)
T PRK11613 32 GTHNSLIDAVKHANLMINAGATIIDVGGESTRP-GAAEVSVEEELDRVIPVVEAIAQRF----EVWISVDTSKPEVI--- 103 (282)
T ss_pred CCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhcC----CCeEEEECCCHHHH---
Confidence 344689999999999999999888776654432 22210 1 2444556655432 34577776655322
Q ss_pred HHHHHHHHhCC-CcccccccccCCCCHHHHHhcCC-------------------CCC--------HHHHHHHHHHHHHhC
Q 013195 292 LKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNR-------------------EYT--------LSDFRTVVDTLIELV 343 (448)
Q Consensus 292 l~el~~l~~~~-~~~~~l~iglES~s~~vLk~m~R-------------------~~t--------~e~~~~~i~~ir~~~ 343 (448)
.+.++.+ .+.+-+. |+. +++.++.+.+ ... .+.+.+.++.+.+.
T Consensus 104 ----~~AL~~GadiINDI~-g~~--d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~- 175 (282)
T PRK11613 104 ----RESAKAGAHIINDIR-SLS--EPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAA- 175 (282)
T ss_pred ----HHHHHcCCCEEEECC-CCC--CHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHc-
Confidence 1122221 1222222 332 3333321111 000 13556777778888
Q ss_pred CCC---EEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 013195 344 PGM---QIATDIICGFPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 344 pgi---~i~~~~IvG~PgET~ed~~~tl~~i~~l 374 (448)
|+ .+..|=-+|| +.|.++=.+.++-+..+
T Consensus 176 -GI~~~~IilDPGiGF-~k~~~~n~~ll~~l~~l 207 (282)
T PRK11613 176 -GIAKEKLLLDPGFGF-GKNLSHNYQLLARLAEF 207 (282)
T ss_pred -CCChhhEEEeCCCCc-CCCHHHHHHHHHHHHHH
Confidence 87 7888888899 66766555555554444
No 233
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=66.58 E-value=1.3e+02 Score=32.09 Aligned_cols=149 Identities=13% Similarity=-0.005 Sum_probs=79.8
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCC----cceEEEeecCCcChhHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG----STMLRIGMTNPPFILEHLK 293 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~----~~~iri~~~~p~~i~~~l~ 293 (448)
-...+.++-++-++.|.+.|+..|.... ...+. .-.+.+++|.+...... .....+...... ..+.++
T Consensus 100 gv~fs~eeKi~Ia~~L~~~GVd~IEvG~---Pa~s~----~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~-~~~dId 171 (503)
T PLN03228 100 GGSLTPPQKLEIARQLAKLRVDIMEVGF---PGSSE----EEFEAVKTIAKTVGNEVDEETGYVPVICGIARC-KKRDIE 171 (503)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCH----HHHHHHHHHHHhcccccccccccceEEeeeccc-CHhhHH
Confidence 3578899999999999999999998733 22222 22455666654321000 001122111111 111222
Q ss_pred HHHHHHhCCCcccccccccCCCCHHH-HHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCH---HHHHHH
Q 013195 294 EIAEVLRHPCVYSFLHVPVQSGSDAV-LSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD---EDFNQT 367 (448)
Q Consensus 294 el~~l~~~~~~~~~l~iglES~s~~v-Lk~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~---ed~~~t 367 (448)
...+.....+ ...+++-+ +.|+.- ...+++. ...+.+.++++.+++. |.. .+.+|.+..+. +.+.+.
T Consensus 172 ~a~~a~~~a~-~~~V~i~i-~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~--G~~---~v~f~~EDa~Rtd~efl~~~ 244 (503)
T PLN03228 172 AAWEALKYAK-RPRILAFT-STSDIHMKYKLKKTKEEVIEMAVSSIRYAKSL--GFH---DIQFGCEDGGRSDKEFLCKI 244 (503)
T ss_pred HHHHhhcccC-CCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCc---eEEeccccccccCHHHHHHH
Confidence 2222222212 34566655 444544 4555553 4566777888888888 753 35667666553 334555
Q ss_pred HHHHHhcCCCeEEE
Q 013195 368 VNLIKEYKFPQVHI 381 (448)
Q Consensus 368 l~~i~~l~~~~v~i 381 (448)
++.+.+.+.+.+.+
T Consensus 245 ~~~a~~~Gad~I~l 258 (503)
T PLN03228 245 LGEAIKAGATSVGI 258 (503)
T ss_pred HHHHHhcCCCEEEE
Confidence 56666777776543
No 234
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=66.44 E-value=1.3e+02 Score=28.99 Aligned_cols=64 Identities=13% Similarity=0.210 Sum_probs=39.3
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCC-CC-----CCHHHHHHHHHHhCCCCCcceEEEeecCCc
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD-IG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d-~~-----~~l~~ll~~l~~~~~~~~~~~iri~~~~p~ 286 (448)
.+..+++++++.++.+.+.|+.-|-+-+..+.. +.+ .. .++..+++.+.+.. ...+.+.+.+|.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p-~~~~i~~~~E~~rl~~~v~~~~~~~----~~plsiDT~~~~ 86 (257)
T TIGR01496 17 GRFLSVDKAVAHAERMLEEGADIIDVGGESTRP-GADRVSPEEELNRVVPVIKALRDQP----DVPISVDTYRAE 86 (257)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhcC----CCeEEEeCCCHH
Confidence 455688999999999999999988874432222 111 10 12445555554432 356777766654
No 235
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=66.03 E-value=2e+02 Score=31.22 Aligned_cols=142 Identities=13% Similarity=0.113 Sum_probs=73.1
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCC-CCCCCCHHHHHHHHHHhCCCCC-cceEE----Eeec-CCcChhHHH
Q 013195 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDG-STMLR----IGMT-NPPFILEHL 292 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg-~d~~~~l~~ll~~l~~~~~~~~-~~~ir----i~~~-~p~~i~~~l 292 (448)
..+.++.+.-+..+.+.|+..|.+.|.-++... +-...+-.+.++.+.+..+... ..+.| +++. .|+++.+..
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~ 96 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERF 96 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHH
Confidence 567888888899999999999998754333210 0011334677888876544100 11222 1111 244333322
Q ss_pred HHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE-eCCCCCHHHHHHHHHHH
Q 013195 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC-GFPGETDEDFNQTVNLI 371 (448)
Q Consensus 293 ~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~Iv-G~PgET~ed~~~tl~~i 371 (448)
+....+. + ...+.+.. +.|+ .+.+...++.+++. |..+...+-+ +-|--|.+.+.+.++.+
T Consensus 97 --v~~a~~~-G-vd~irif~-~lnd-----------~~n~~~~i~~ak~~--G~~v~~~i~~t~~p~~~~~~~~~~~~~~ 158 (582)
T TIGR01108 97 --VKKAVEN-G-MDVFRIFD-ALND-----------PRNLQAAIQAAKKH--GAHAQGTISYTTSPVHTLETYLDLAEEL 158 (582)
T ss_pred --HHHHHHC-C-CCEEEEEE-ecCc-----------HHHHHHHHHHHHHc--CCEEEEEEEeccCCCCCHHHHHHHHHHH
Confidence 2222222 2 33444432 3333 13466666667766 6555544321 23445666666666666
Q ss_pred HhcCCCeE
Q 013195 372 KEYKFPQV 379 (448)
Q Consensus 372 ~~l~~~~v 379 (448)
.+.+.+.+
T Consensus 159 ~~~Gad~I 166 (582)
T TIGR01108 159 LEMGVDSI 166 (582)
T ss_pred HHcCCCEE
Confidence 66666544
No 236
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=65.93 E-value=16 Score=29.19 Aligned_cols=48 Identities=10% Similarity=0.215 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEcc
Q 013195 75 SEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGC 133 (448)
Q Consensus 75 se~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc 133 (448)
.+.+...-.+.|.++++.+.+||++++-..+.-+.. .+ .|+||++|+.
T Consensus 20 ~~vl~AAA~ka~l~ii~tp~dAeLviV~G~sipnd~---------~l--~GKkv~i~d~ 67 (103)
T COG3925 20 HTVLGAAAHKAGLEIIDTPNDAELVIVFGSSIPNDS---------AL--NGKKVWIGDI 67 (103)
T ss_pred HHHHHHHHHHCCCeeeCCCCcccEEEEeccccCCCc---------cc--cCceEEEecH
Confidence 344555567789999999999999999776665432 11 4678988875
No 237
>PHA01735 hypothetical protein
Probab=64.47 E-value=10 Score=28.40 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccC----CCCCCHHHHHHH
Q 013195 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR----MKKVPSAVVKKR 406 (448)
Q Consensus 358 gET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~----~~~v~~~~~~~R 406 (448)
.-|-.|+...++|+++..++.+ |.+|+|+.. +|++..+..++|
T Consensus 29 eATtaDL~AA~d~Lk~NdItgv------~~~gspl~~La~~~P~l~~e~vq~~ 75 (76)
T PHA01735 29 EATTADLRAACDWLKSNDITGV------AVDGSPLAKLAGLMPQLTFEDVQER 75 (76)
T ss_pred cccHHHHHHHHHHHHHCCCcee------eCCCCHHHHHHhcCccCCHHHHHhc
Confidence 3478999999999999988654 889999875 456776666665
No 238
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=63.77 E-value=22 Score=37.74 Aligned_cols=57 Identities=26% Similarity=0.278 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCeeecCCCCCcEE-EEeeccccc--------------chHHHHHHHHHHHhcCCCCEEEE
Q 013195 75 SEYMAGQLSAFGYALTDNSEEADIW-LINTCTVKS--------------PSQSAMDTLIAKCKSAKKPLVVA 131 (448)
Q Consensus 75 se~~~~~L~~~G~~~~~~~~~aDvv-~intctv~~--------------~a~~~~~~~i~~~~~~~~~vVvg 131 (448)
.+.+...+...|..+++.+++||+| .|||..-.. ..-..+...|+.+.+.|++|.++
T Consensus 280 ~esv~~hI~aaGg~~~~~~~~AD~vL~Vntp~~~~~~~~~~~~~~~~~~~~~~~f~~~I~~~l~~G~~Vaia 351 (497)
T PF13552_consen 280 GESVKEHIRAAGGVLVDSPEEADLVLAVNTPGDGMTEESEQFANDDTPYRNLREFVDRIEEYLAKGKPVAIA 351 (497)
T ss_pred HHHHHHHHHhcCCEEcCCCCCCCEEEEEecCCCccccccccccccccccccHHHHHHHHHHHHHcCCcEEEE
Confidence 4567889999999999999999988 566664322 12245566677777778887763
No 239
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=63.74 E-value=2.1e+02 Score=30.64 Aligned_cols=151 Identities=12% Similarity=0.014 Sum_probs=85.5
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEE-eecCCcChh-HHHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI-GMTNPPFIL-EHLKEI 295 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri-~~~~p~~i~-~~l~el 295 (448)
-.+.++++-++-++.|.+.|+++|...- ...+.. -.+.+++|.+.-. ....+.. .......+. +....+
T Consensus 17 g~~~s~eeKl~Ia~~L~~~GVd~IE~G~---p~~s~~----d~~~v~~i~~~~~--~~~~i~~~~r~~r~~~~~~~d~~~ 87 (526)
T TIGR00977 17 GVSFSLEDKIRIAERLDDLGIHYIEGGW---PGANPK----DVQFFWQLKEMNF--KNAKIVAFCSTRRPHKKVEEDKML 87 (526)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCChH----HHHHHHHHHHhCC--CCcEEEEEeeecCCCCCCchHHHH
Confidence 4578899999999999999999998731 122221 1455666654211 1122222 112222221 111123
Q ss_pred HHHHhCCCcccccccccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEE---EEEEeCCCCCHHHHHHHHHH
Q 013195 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIAT---DIICGFPGETDEDFNQTVNL 370 (448)
Q Consensus 296 ~~l~~~~~~~~~l~iglES~s~~vLk~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~---~~IvG~PgET~ed~~~tl~~ 370 (448)
..+...+ ...+|+-+=+.+-.+...+++. ...+.+.+.++.+++. |..+.. +|.-|+- -+.+.+.+.++.
T Consensus 88 ea~~~~~--~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~--g~~V~~~~e~f~D~~r-~~~~~l~~~~~~ 162 (526)
T TIGR00977 88 QALIKAE--TPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQ--GDEVIYDAEHFFDGYK-ANPEYALATLAT 162 (526)
T ss_pred HHHhcCC--CCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEeeeeeeccc-CCHHHHHHHHHH
Confidence 3333332 3567776644444444566653 4566677788899998 776543 3323432 356777788888
Q ss_pred HHhcCCCeEEEE
Q 013195 371 IKEYKFPQVHIS 382 (448)
Q Consensus 371 i~~l~~~~v~i~ 382 (448)
+.+.+.+.+.+.
T Consensus 163 a~~aGad~i~i~ 174 (526)
T TIGR00977 163 AQQAGADWLVLC 174 (526)
T ss_pred HHhCCCCeEEEe
Confidence 888888876653
No 240
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=63.23 E-value=1.3e+02 Score=27.87 Aligned_cols=153 Identities=16% Similarity=0.202 Sum_probs=83.3
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEE--EEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHH
Q 013195 220 SYTVESLVGRVRTVIADGVKEVW--LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~--~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (448)
+-+.-.+-++++.+.+.|+..+. +.|..+- .... -=.++++.|.+... -...+.+...+|....+ .+.+
T Consensus 8 ~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fv---pn~~-~g~~~i~~i~~~~~--~~~DvHLMv~~P~~~i~---~~~~ 78 (201)
T PF00834_consen 8 SADFLNLEEEIKRLEEAGADWLHIDIMDGHFV---PNLT-FGPDIIKAIRKITD--LPLDVHLMVENPERYIE---EFAE 78 (201)
T ss_dssp GS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSS---SSB--B-HHHHHHHHTTSS--SEEEEEEESSSGGGHHH---HHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCEEEEeecccccC---Cccc-CCHHHHHHHhhcCC--CcEEEEeeeccHHHHHH---HHHh
Confidence 34556788999999999988765 4443321 1110 11678888876532 23566666567754332 3333
Q ss_pred HHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCC
Q 013195 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (448)
Q Consensus 298 l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~ 377 (448)
.. ..++.+-+|+.+ +..+.++.+|++ |+....-+ -|+...+.++. ++. .+|
T Consensus 79 ~g-----~~~i~~H~E~~~--------------~~~~~i~~ik~~--g~k~Gial---nP~T~~~~~~~---~l~--~vD 129 (201)
T PF00834_consen 79 AG-----ADYITFHAEATE--------------DPKETIKYIKEA--GIKAGIAL---NPETPVEELEP---YLD--QVD 129 (201)
T ss_dssp HT------SEEEEEGGGTT--------------THHHHHHHHHHT--TSEEEEEE----TTS-GGGGTT---TGC--CSS
T ss_pred cC-----CCEEEEcccchh--------------CHHHHHHHHHHh--CCCEEEEE---ECCCCchHHHH---Hhh--hcC
Confidence 21 357777777543 356788999999 88775444 25544444332 223 356
Q ss_pred eEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHHHHHHh
Q 013195 378 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 416 (448)
Q Consensus 378 ~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~~~ 416 (448)
.+ ..++..||..-..+ .....+|.++++++..+
T Consensus 130 ~V--lvMsV~PG~~Gq~f----~~~~~~KI~~l~~~~~~ 162 (201)
T PF00834_consen 130 MV--LVMSVEPGFGGQKF----IPEVLEKIRELRKLIPE 162 (201)
T ss_dssp EE--EEESS-TTTSSB------HGGHHHHHHHHHHHHHH
T ss_pred EE--EEEEecCCCCcccc----cHHHHHHHHHHHHHHHh
Confidence 54 45566778654433 23344565666666553
No 241
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=62.89 E-value=61 Score=35.38 Aligned_cols=102 Identities=11% Similarity=0.124 Sum_probs=67.1
Q ss_pred CceEEEEecCCcc-ChhHHHHHHHHHHhCCCeeecCC--------------CCCcEEEEeecccccchHHHHHHHHHHHh
Q 013195 58 TETIYMKTFGCSH-NQSDSEYMAGQLSAFGYALTDNS--------------EEADIWLINTCTVKSPSQSAMDTLIAKCK 122 (448)
Q Consensus 58 ~~~~~~~t~GC~~-N~~dse~~~~~L~~~G~~~~~~~--------------~~aDvv~intctv~~~a~~~~~~~i~~~~ 122 (448)
.++|++.|+|=-. -..=+.-..+.|...||+++... ..||+++| |+-.....+.+-.+++.+|
T Consensus 494 rP~vfL~~lG~~a~~~aRa~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~~sga~i~vi--CssD~~Y~~~a~~~~~al~ 571 (619)
T TIGR00642 494 RPKVFLLCLGTLADFGGREGFSSNVWHIAGIDTIQVEGGTTAEIVVEAFKKAGAQVAVL--CSSDKVYAQQGLEVAKALK 571 (619)
T ss_pred CCeEEEeCCCChHhhccHHHHHHhHHhcCceeeccCCCCCCHHHHHHHHHhcCCCEEEE--eCCCcchHHHHHHHHHHHH
Confidence 4689999999533 24445566778888899987642 56899999 8876665666777888888
Q ss_pred cCCC-CEEEEccccccchhhhcCCccE--EEcCCchhHHHHHH
Q 013195 123 SAKK-PLVVAGCVPQGSRDLKELEGVS--IVGVQQIDRVVEVV 162 (448)
Q Consensus 123 ~~~~-~vVvgGc~a~~~~e~~~~~~d~--vvg~~~~~~i~~~l 162 (448)
..|. .|++.|--+. ..++....+|. .+|..-...|..+.
T Consensus 572 ~ag~~~v~lAG~p~~-~~~~~~aGvd~fi~~g~d~~~~L~~~~ 613 (619)
T TIGR00642 572 AAGAKALYLAGAFKE-FGDDAAEAIDGRLFMKMNVVDTLSSTL 613 (619)
T ss_pred hCCCCEEEEeCCCcc-hhhHHhcCCcceeEcCCcHHHHHHHHH
Confidence 7775 6889996554 22233333453 34555444444443
No 242
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=62.66 E-value=1.4e+02 Score=30.07 Aligned_cols=136 Identities=24% Similarity=0.323 Sum_probs=80.4
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCC------------------CcceEEE
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD------------------GSTMLRI 280 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~------------------~~~~iri 280 (448)
...+.+..+++|+.|.+.|..-+.+.-+|.- -++.++.|.+..+.+ +...+|+
T Consensus 37 ~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~---------~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~~iRI 107 (360)
T PRK00366 37 DTADVEATVAQIKRLARAGCEIVRVAVPDME---------AAAALPEIKKQLPVPLVADIHFDYRLALAAAEAGADALRI 107 (360)
T ss_pred CchhHHHHHHHHHHHHHcCCCEEEEccCCHH---------HHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHhCCCEEEE
Confidence 3678999999999999999887777543321 133344443332211 2334555
Q ss_pred eecCCcCh---hHHHHHHHHHHhCCCcccccccccCCCC--HHHHHhcCCCCCH----HHHHHHHHHHHHhCCCCEEEEE
Q 013195 281 GMTNPPFI---LEHLKEIAEVLRHPCVYSFLHVPVQSGS--DAVLSAMNREYTL----SDFRTVVDTLIELVPGMQIATD 351 (448)
Q Consensus 281 ~~~~p~~i---~~~l~el~~l~~~~~~~~~l~iglES~s--~~vLk~m~R~~t~----e~~~~~i~~ir~~~pgi~i~~~ 351 (448)
||..+ .+.+.++.+..+..++ -+-||+-||| .+++++.+. .+. +-..+-++.+.+. |+ .|
T Consensus 108 ---NPGNig~~~~~v~~vv~~ak~~~i--pIRIGvN~GSL~~~~~~~yg~-~t~eamveSAl~~~~~le~~--~f---~~ 176 (360)
T PRK00366 108 ---NPGNIGKRDERVREVVEAAKDYGI--PIRIGVNAGSLEKDLLEKYGE-PTPEALVESALRHAKILEEL--GF---DD 176 (360)
T ss_pred ---CCCCCCchHHHHHHHHHHHHHCCC--CEEEecCCccChHHHHHHcCC-CCHHHHHHHHHHHHHHHHHC--CC---Cc
Confidence 56555 3466667766666654 5667887776 456665532 243 3344555556666 54 56
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhc
Q 013195 352 IICGFPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 352 ~IvG~PgET~ed~~~tl~~i~~l 374 (448)
|++-+-.-+.....+..+++.+.
T Consensus 177 iviS~KsS~v~~~i~ayrlla~~ 199 (360)
T PRK00366 177 IKISVKASDVQDLIAAYRLLAKR 199 (360)
T ss_pred EEEEEEcCCHHHHHHHHHHHHhc
Confidence 77777665655555566555443
No 243
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=62.65 E-value=14 Score=34.49 Aligned_cols=55 Identities=33% Similarity=0.520 Sum_probs=38.2
Q ss_pred ccccCCCCCCCCCCceEEEE---ecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEE
Q 013195 45 LSKTGSLSPKIPGTETIYMK---TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101 (448)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~---t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~i 101 (448)
+.+.--.+++-|..++||+. |-+..+|. -..|...|...||.++++|++|..|+=
T Consensus 8 MS~tIfLdPV~~~~rtVyv~vrNTSd~~~~l--~~~i~~~L~~kGY~vv~~P~~A~Y~lq 65 (215)
T PF05818_consen 8 MSQTIFLDPVAPSQRTVYVQVRNTSDKDINL--ESQIISALQAKGYQVVDDPDEAHYWLQ 65 (215)
T ss_pred ccccEEeCCCCcccceEEEEEecCCCCccch--HHHHHHHHHHCCCEEecChhhCeEEEE
Confidence 33333445555667788874 45666632 234778899999999999999997753
No 244
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.59 E-value=2.9 Score=35.49 Aligned_cols=17 Identities=35% Similarity=0.942 Sum_probs=14.9
Q ss_pred EeCCCCCCCccceeeCc
Q 013195 197 PINVGCLGACTYCKTKH 213 (448)
Q Consensus 197 ~isrGC~~~CsFC~~~~ 213 (448)
+..+||-+.|+||.+..
T Consensus 75 KFADG~GH~C~YCq~r~ 91 (169)
T KOG3799|consen 75 KFADGCGHNCSYCQTRF 91 (169)
T ss_pred ccccccCcccchhhhhH
Confidence 57899999999998863
No 245
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=60.95 E-value=18 Score=37.27 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHhCC--CCCcceEEEeecCCcChhHHHHHHHHHHhCC
Q 013195 258 NLPILLNAIVAELP--PDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 302 (448)
Q Consensus 258 ~l~~ll~~l~~~~~--~~~~~~iri~~~~p~~i~~~l~el~~l~~~~ 302 (448)
...++++.+.+... ......+.++.-.+....+.+.++.+.++.-
T Consensus 55 t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~~~l~eLl~~lk~~ 101 (404)
T TIGR03278 55 PPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDL 101 (404)
T ss_pred CHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCHHHHHHHHHHHhC
Confidence 45667766665432 1134567776554555556666666666543
No 246
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=59.32 E-value=30 Score=29.65 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCeee-----c-------CCCCCcEEEEeecccccc-hHHHHHHHHHHHhcCCCCEEEEccccc
Q 013195 75 SEYMAGQLSAFGYALT-----D-------NSEEADIWLINTCTVKSP-SQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (448)
Q Consensus 75 se~~~~~L~~~G~~~~-----~-------~~~~aDvv~intctv~~~-a~~~~~~~i~~~~~~~~~vVvgGc~a~ 136 (448)
.+.|+..|...|+++. . +..++|+++|-|.|.... ....+...++.+..+++++.+=|++-+
T Consensus 18 A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~~~k~~avfgtgd~ 92 (140)
T TIGR01754 18 AFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGYKPSNVAIFGTGET 92 (140)
T ss_pred HHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcccCCEEEEEEcCCC
Confidence 4566677777787753 1 233579999977665222 223566677776656777666666543
No 247
>PLN02321 2-isopropylmalate synthase
Probab=58.78 E-value=1.8e+02 Score=31.91 Aligned_cols=146 Identities=14% Similarity=0.095 Sum_probs=77.6
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCC--CCcce-EE---EeecCCcChhHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP--DGSTM-LR---IGMTNPPFILEH 291 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~--~~~~~-ir---i~~~~p~~i~~~ 291 (448)
-.+.+.++-++-++.|.+.|++.|.... ...+.+ + .+.++.|.+.+.. ....+ .. +...+..++
T Consensus 102 g~~~s~eeKl~Ia~~L~~lGVd~IEvGf---P~~Sp~---D-~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dI--- 171 (632)
T PLN02321 102 GATLTSKEKLDIARQLAKLGVDIIEAGF---PIASPD---D-LEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDI--- 171 (632)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC---cCCCcc---H-HHHHHHHHHhcccCCCccccceeeeeehhccHHhH---
Confidence 4568999999999999999999998743 122221 1 3446666543210 00011 11 111233222
Q ss_pred HHHHHHHHhCCCcccccccccCCCCHH-HHHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCC---HHHHH
Q 013195 292 LKEIAEVLRHPCVYSFLHVPVQSGSDA-VLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGET---DEDFN 365 (448)
Q Consensus 292 l~el~~l~~~~~~~~~l~iglES~s~~-vLk~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET---~ed~~ 365 (448)
+...+.+.... ...+|+-+ +.|+- +.+.+++. ...+.+.+.++.+++. |.. ++.++.+..+ .+.+.
T Consensus 172 -d~A~~al~~a~-~~~I~i~~-stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~--G~~---~v~fs~EDa~rtd~d~l~ 243 (632)
T PLN02321 172 -DAAWEAVKHAK-RPRIHTFI-ATSEIHMEHKLRKTPDEVVEIARDMVKYARSL--GCE---DVEFSPEDAGRSDPEFLY 243 (632)
T ss_pred -HHHHHHhcCCC-CCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCc---eEEEecccCCCCCHHHHH
Confidence 22222222211 12466655 44554 33555553 3456667777888887 642 4566665544 44555
Q ss_pred HHHHHHHhcCCCeEEE
Q 013195 366 QTVNLIKEYKFPQVHI 381 (448)
Q Consensus 366 ~tl~~i~~l~~~~v~i 381 (448)
+.++.+.+.+.+.+.+
T Consensus 244 ~~~~~a~~aGa~~I~L 259 (632)
T PLN02321 244 RILGEVIKAGATTLNI 259 (632)
T ss_pred HHHHHHHHcCCCEEEe
Confidence 5666666677765543
No 248
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=58.53 E-value=1.5e+02 Score=28.37 Aligned_cols=93 Identities=15% Similarity=0.219 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhC
Q 013195 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 301 (448)
Q Consensus 222 ~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~ 301 (448)
++++..++++.+.+.|++.+-+=- + .+. ..-.+.++++.+.++ ....+++. .|...-.+...++.+.+..
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKv---g---~~~-~~d~~~v~~vr~~~g--~~~~l~vD-an~~~~~~~a~~~~~~l~~ 154 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKV---G---RDP-ARDVAVVAALREAVG--DDAELRVD-ANRGWTPKQAIRALRALED 154 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec---C---CCH-HHHHHHHHHHHHhcC--CCCEEEEe-CCCCcCHHHHHHHHHHHHh
Confidence 578899999999999999887621 1 110 122577888887765 45677776 3432222333334444444
Q ss_pred CCcccccccccCCCCHHHHHhcCC
Q 013195 302 PCVYSFLHVPVQSGSDAVLSAMNR 325 (448)
Q Consensus 302 ~~~~~~l~iglES~s~~vLk~m~R 325 (448)
.+ ..++.-|+...+.+.++.+.+
T Consensus 155 ~~-i~~iEeP~~~~d~~~~~~l~~ 177 (265)
T cd03315 155 LG-LDYVEQPLPADDLEGRAALAR 177 (265)
T ss_pred cC-CCEEECCCCcccHHHHHHHHh
Confidence 33 357777877666555554443
No 249
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=58.05 E-value=2.3e+02 Score=29.59 Aligned_cols=116 Identities=14% Similarity=0.161 Sum_probs=66.5
Q ss_pred cccccccCCCCHHHHHhcCCCCC---HHHHHHHHHHHHHhCCCC-EEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEE
Q 013195 306 SFLHVPVQSGSDAVLSAMNREYT---LSDFRTVVDTLIELVPGM-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381 (448)
Q Consensus 306 ~~l~iglES~s~~vLk~m~R~~t---~e~~~~~i~~ir~~~pgi-~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i 381 (448)
..+.+.+...+...|+.+.|+.. +|.+.+.++.+++. ... .+...++=|+ +-+|..+-.+++..-.++.+-+
T Consensus 404 tqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~lk~K-~qrtvyRlTlVkg~---n~dd~~Ayfnlv~rglp~fieV 479 (601)
T KOG1160|consen 404 TQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKALKKK-QQRTVYRLTLVKGW---NSDDLPAYFNLVSRGLPDFIEV 479 (601)
T ss_pred heeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHHHHHh-hcceEEEEEEeccc---cccccHHHHHHHhccCCceEEE
Confidence 35666777888899999999854 34555555555543 123 3444444443 4566777778888777777766
Q ss_pred EeceeCCCCcccCC--CCCC-HHHHHHHHHHHHHHHHhhchhhcCCC
Q 013195 382 SQFYPRPGTPAARM--KKVP-SAVVKKRSRELTSVFEAFTPYLGMEG 425 (448)
Q Consensus 382 ~~~~p~pGT~~~~~--~~v~-~~~~~~R~~~l~~~~~~~~~~~~~~g 425 (448)
---+-.-.+.++++ ..+| -++..+-..+|.++.+.++.....-|
T Consensus 480 kGvty~ges~~s~lTm~nvp~~Ee~v~Fv~eL~~l~~~ye~a~ehah 526 (601)
T KOG1160|consen 480 KGVTYCGESELSNLTMTNVPWHEEVVEFVFELVDLLQEYEIACEHAH 526 (601)
T ss_pred eceeEecccccCcccccCccHHHHHHHHHHHHHHhhhhhhhhhcccC
Confidence 54333333333433 3454 34445555666555555544433333
No 250
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=57.60 E-value=1.7e+02 Score=28.34 Aligned_cols=50 Identities=8% Similarity=0.115 Sum_probs=33.4
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCC------CHHHHHHHHHHhCC
Q 013195 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV------NLPILLNAIVAELP 271 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~------~l~~ll~~l~~~~~ 271 (448)
++.|.-++..+..|.+.|+...+.. .++.||.+... ...+.+++|.+.+.
T Consensus 55 TKnp~P~l~~L~~l~~~gy~~yfq~--Tit~Y~~~lEp~vP~~~~~i~~f~~Ls~~iG 110 (266)
T PF08902_consen 55 TKNPAPFLPYLDELDERGYPYYFQF--TITGYGKDLEPNVPPKDERIETFRELSERIG 110 (266)
T ss_pred cCCcHHHHhhHHHHHhCCCceEEEE--EeCCCCccccCCCCCHHHHHHHHHHHHHHHC
Confidence 4556667888988988898765544 36778887642 33455566666653
No 251
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=55.34 E-value=1.2e+02 Score=27.29 Aligned_cols=90 Identities=20% Similarity=0.225 Sum_probs=54.7
Q ss_pred ChhHHH-HHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccccchhh---hcCCc
Q 013195 71 NQSDSE-YMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDL---KELEG 146 (448)
Q Consensus 71 N~~dse-~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e~---~~~~~ 146 (448)
|.-+-| .+...|+.+ .++||+++|.--.-.+-.-.++.+.+++.-+.+++++++=..-+..|-+ .....
T Consensus 82 ~v~~le~i~~~al~rA-------~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~ 154 (179)
T COG1618 82 NVEGLEEIAIPALRRA-------LEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGG 154 (179)
T ss_pred eHHHHHHHhHHHHHHH-------hhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCC
Confidence 444444 444455543 2449999997666544445677788888877777777665556667743 34455
Q ss_pred cEE-EcCCchhHHHHHHHHHhc
Q 013195 147 VSI-VGVQQIDRVVEVVEETLK 167 (448)
Q Consensus 147 d~v-vg~~~~~~i~~~l~~~~~ 167 (448)
+.+ +-+.+.+.++.-+-..++
T Consensus 155 v~v~lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 155 VYVFLTPENRNRILNEILSVLK 176 (179)
T ss_pred EEEEEccchhhHHHHHHHHHhc
Confidence 555 777766666544433333
No 252
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=54.93 E-value=1.8e+02 Score=27.91 Aligned_cols=120 Identities=18% Similarity=0.107 Sum_probs=64.3
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCC------CCCCCHHHHHHHHHHhCCCCCcceEEEe---ecCCcChhH
Q 013195 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR------DIGVNLPILLNAIVAELPPDGSTMLRIG---MTNPPFILE 290 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~------d~~~~l~~ll~~l~~~~~~~~~~~iri~---~~~p~~i~~ 290 (448)
.++..++.+++..+.+.|++.|.++.+|....+. ....+-.+|++.+..... +...+... ..||..-+
T Consensus 69 ~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~--~~~~igva~yPe~hp~~~~- 145 (274)
T cd00537 69 DRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENG--GGFSIGVAAYPEGHPEAPS- 145 (274)
T ss_pred CCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcC--CCCccccccCCCcCCCCCC-
Confidence 3445889999999999999999988666665542 111356778877765321 11112111 12333211
Q ss_pred HHHHHHHHHhC-CCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCC
Q 013195 291 HLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359 (448)
Q Consensus 291 ~l~el~~l~~~-~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgE 359 (448)
...++..+.+. ..++.++ .. .=-|+.+.+.+.++.+++. |+. .-+|.|+..=
T Consensus 146 ~~~~~~~L~~Ki~aGA~f~-----------iT--Q~~fd~~~~~~~~~~~~~~--gi~--vPIi~GI~p~ 198 (274)
T cd00537 146 LEEDIKRLKRKVDAGADFI-----------IT--QLFFDNDAFLRFVDRCRAA--GIT--VPIIPGIMPL 198 (274)
T ss_pred HHHHHHHHHHHHHCCCCEE-----------ee--cccccHHHHHHHHHHHHHc--CCC--CCEEeecccc
Confidence 11122222211 0011111 00 1135678888888899888 753 3577777553
No 253
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=54.78 E-value=69 Score=28.97 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecee
Q 013195 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386 (448)
Q Consensus 328 t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p 386 (448)
+.+...++.+.+++.+||+.+.+. -|+- ++++-++.++.+.+.++|.+.+..=+|
T Consensus 57 ~~~v~~~~~~~l~~~yP~l~i~g~--~g~f--~~~~~~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 57 KPDVLQQLKVKLIKEYPKLKIVGA--FGPL--EPEERKAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEE--CCCC--ChHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 345566788889999999988764 5654 455556789999999999887765333
No 254
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=54.74 E-value=56 Score=27.07 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=43.7
Q ss_pred EEecCCccChhHHHHHHHHHHhCCCeeecC------------CCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-
Q 013195 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDN------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV- 129 (448)
Q Consensus 63 ~~t~GC~~N~~dse~~~~~L~~~G~~~~~~------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vV- 129 (448)
|.-+||..+..=.+++...|...|...... ..+-|++++= +....+ ..+.+.++.+|++|.+||
T Consensus 3 I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~i--S~sG~t-~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 3 VVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAI--SNSGET-DELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred EEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEE--eCCCCC-HHHHHHHHHHHHCCCeEEE
Confidence 344566677788888999998888654221 2344777773 333333 346778889998898766
Q ss_pred EEc
Q 013195 130 VAG 132 (448)
Q Consensus 130 vgG 132 (448)
+++
T Consensus 80 iT~ 82 (128)
T cd05014 80 ITG 82 (128)
T ss_pred EeC
Confidence 444
No 255
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=54.50 E-value=2.8e+02 Score=30.21 Aligned_cols=124 Identities=10% Similarity=0.080 Sum_probs=72.7
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHh
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (448)
.+++.+++-++.+.+.|+..|.|.|- . |.-.+..+.++++++.+.++ ..+.+.+=+-..+. +....+...
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I~i~Dt-~---G~~~P~~~~~lv~~lk~~~~----~pi~~H~Hnt~Gla--~An~laAv~ 220 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSICIKDM-A---GLLTPYAAYELVKALKEEVD----LPVQLHSHCTSGLA--PMTYLKAVE 220 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCc-C---CCcCHHHHHHHHHHHHHhCC----CeEEEEEcCCCCcH--HHHHHHHHH
Confidence 57999999999999999999998762 2 33223467888888887653 33444321211111 111223333
Q ss_pred CCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 013195 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (448)
Q Consensus 301 ~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (448)
.+ +..++..+- -|..+.+.-....++..++.. |.. ++-+.+.+.+.-++++++.
T Consensus 221 aG--ad~vD~ai~--------g~g~~agn~~~e~vv~~L~~~--g~~---------~~idl~~l~~~s~~~~~~~ 274 (592)
T PRK09282 221 AG--VDIIDTAIS--------PLAFGTSQPPTESMVAALKGT--PYD---------TGLDLELLFEIAEYFREVR 274 (592)
T ss_pred hC--CCEEEeecc--------ccCCCcCCHhHHHHHHHHHhC--CCC---------CccCHHHHHHHHHHHHHHH
Confidence 32 567766655 355555555556666666554 432 2445667777777776664
No 256
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=54.43 E-value=28 Score=32.96 Aligned_cols=67 Identities=24% Similarity=0.346 Sum_probs=40.8
Q ss_pred cCCccChhHHH-HHHHHHHhCC--C--eeec---CCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-EEccccc
Q 013195 66 FGCSHNQSDSE-YMAGQLSAFG--Y--ALTD---NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAGCVPQ 136 (448)
Q Consensus 66 ~GC~~N~~dse-~~~~~L~~~G--~--~~~~---~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vV-vgGc~a~ 136 (448)
.||.++..|.. .+...|...- | ..+| .++ .|+++|- =+|.+ +.-.+.++++|++.+.|| +|-|.++
T Consensus 15 ~GC~~slldl~E~L~dll~~~div~~~~l~D~keiPE-vDValVE-GsV~~---ee~lE~v~ElRekakivVA~GsCA~~ 89 (247)
T COG1941 15 SGCHMSLLDLYEKLLDLLEDADIVYCPTLVDEKEIPE-VDVALVE-GSVCD---EEELELVKELREKAKIVVALGSCAVT 89 (247)
T ss_pred cchHHHHHhHHHHHHHhhhhhcEEEeecccccccCCc-ccEEEEe-cccCc---HHHHHHHHHHHHhCcEEEEEecchhc
Confidence 48999888864 4555555331 1 1111 244 9999994 46652 345677888887655444 7888665
Q ss_pred c
Q 013195 137 G 137 (448)
Q Consensus 137 ~ 137 (448)
.
T Consensus 90 G 90 (247)
T COG1941 90 G 90 (247)
T ss_pred C
Confidence 4
No 257
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=54.21 E-value=3e+02 Score=29.33 Aligned_cols=52 Identities=17% Similarity=0.040 Sum_probs=32.9
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEecCCCCC-CCCCCCCHHHHHHHHHHhCC
Q 013195 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELP 271 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~y-g~d~~~~l~~ll~~l~~~~~ 271 (448)
..+.++.+.-++.+.+.|+..|...|.-++.- -+-...+-.+.|+.+.+.++
T Consensus 23 r~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~ 75 (499)
T PRK12330 23 RMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMP 75 (499)
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCC
Confidence 44678888888888888999888876533321 00012334677777777654
No 258
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=54.18 E-value=2.8e+02 Score=29.05 Aligned_cols=141 Identities=14% Similarity=0.139 Sum_probs=78.6
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCC-CCCCCCHHHHHHHHHHhCCCCCcc---eEE----Eeec-CCcChhH
Q 013195 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGST---MLR----IGMT-NPPFILE 290 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg-~d~~~~l~~ll~~l~~~~~~~~~~---~ir----i~~~-~p~~i~~ 290 (448)
..+.++.+.-+..+.+.|+..|.+.+..++... +-...+-.+.++.+.+.++ +.. +.| +++. .|+++.+
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~--~~~l~~l~r~~N~~G~~~~pddvv~ 99 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVK--KTKLQMLLRGQNLLGYRNYADDVVE 99 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCC--CCEEEEEeccccccccccCchhhHH
Confidence 567888888888888899999998765433210 0011234678888876554 211 122 1111 2443333
Q ss_pred HHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEE--EEEeCCCCCHHHHHHHH
Q 013195 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD--IICGFPGETDEDFNQTV 368 (448)
Q Consensus 291 ~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~--~IvG~PgET~ed~~~tl 368 (448)
.. +....+.+ +..+++.. +.|+- ..+.++++.+++. |..+... ...+ |--|.+-+.+.+
T Consensus 100 ~~--v~~A~~~G--vd~irif~-~lnd~-----------~n~~~~v~~ak~~--G~~v~~~i~~t~~-p~~~~~~~~~~a 160 (448)
T PRK12331 100 SF--VQKSVENG--IDIIRIFD-ALNDV-----------RNLETAVKATKKA--GGHAQVAISYTTS-PVHTIDYFVKLA 160 (448)
T ss_pred HH--HHHHHHCC--CCEEEEEE-ecCcH-----------HHHHHHHHHHHHc--CCeEEEEEEeecC-CCCCHHHHHHHH
Confidence 22 23333332 34555543 33432 2366677888887 7654433 2333 556677777777
Q ss_pred HHHHhcCCCeEEE
Q 013195 369 NLIKEYKFPQVHI 381 (448)
Q Consensus 369 ~~i~~l~~~~v~i 381 (448)
+-+.+.+.+.+.+
T Consensus 161 ~~l~~~Gad~I~i 173 (448)
T PRK12331 161 KEMQEMGADSICI 173 (448)
T ss_pred HHHHHcCCCEEEE
Confidence 7777777776544
No 259
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=53.65 E-value=32 Score=32.28 Aligned_cols=51 Identities=18% Similarity=0.226 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcCCC
Q 013195 74 DSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK 126 (448)
Q Consensus 74 dse~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~ 126 (448)
--..+...|+.+||++++- ..+||+|.. |-+.|.. .....+++..+++.|.
T Consensus 120 Gk~iV~~ml~~aGfevidLG~dvP~e~fve~a~e~k~d~v~~-SalMTtt-m~~~~~viE~L~eeGi 184 (227)
T COG5012 120 GKNIVATMLEAAGFEVIDLGRDVPVEEFVEKAKELKPDLVSM-SALMTTT-MIGMKDVIELLKEEGI 184 (227)
T ss_pred HHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHHHcCCcEEec-hHHHHHH-HHHHHHHHHHHHHcCC
Confidence 3467888999999999764 457999988 4344433 3346778888888773
No 260
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=53.55 E-value=89 Score=24.89 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=37.5
Q ss_pred CceEEEEec-CCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeeccccc-ch--HHHHHHHHHHH-hcCCCCEEEEc
Q 013195 58 TETIYMKTF-GCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS-PS--QSAMDTLIAKC-KSAKKPLVVAG 132 (448)
Q Consensus 58 ~~~~~~~t~-GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~-~a--~~~~~~~i~~~-~~~~~~vVvgG 132 (448)
.+-+.+.|- ||+=-.+--.. ..|. ++ +.||.|-+.||++.. +. -..+.++.++. .+.+.+||+|-
T Consensus 28 v~viaf~tCGgCpGrlvpn~~--k~lk--~~------egaeaihfasCml~~~PkCpy~~~eei~Kk~ie~~~i~Vv~gT 97 (101)
T COG5561 28 VRVIAFITCGGCPGRLVPNQI--KQLK--GK------EGAEAIHFASCMLAFKPKCPYASAEEIAKKEIEKMGIKVVMGT 97 (101)
T ss_pred EEEEEEEEcCCCCcchhHHHH--HHHh--hc------cccceeeeeeeeeccCCCCCccCHHHHHHHHHHHhCCcEEeec
Confidence 456788888 99975544332 2232 21 338999999999877 21 01122232322 34578888863
No 261
>COG1679 Predicted aconitase [General function prediction only]
Probab=53.51 E-value=27 Score=35.20 Aligned_cols=70 Identities=14% Similarity=0.256 Sum_probs=49.8
Q ss_pred eEEEEecCCccC-hhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccc
Q 013195 60 TIYMKTFGCSHN-QSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (448)
Q Consensus 60 ~~~~~t~GC~~N-~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~ 136 (448)
.+-++++||++- ..+-..++..|...+ .+...++|+-.|+.|...+.. .-.++.+++.|.++|-.=|+.-
T Consensus 289 epdli~iGcPHaS~~E~~~la~~l~~r~-----~~~~~~~~V~~sr~v~~~a~~--~G~~~~le~~g~~vv~DtC~vV 359 (403)
T COG1679 289 EPDLIALGCPHASLEELRRLAELLKGRK-----RPAGVPLYVTTSRAVYAQARK--EGYLAKLEELGVKVVSDTCMVV 359 (403)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHHHhccC-----CCCCCCEEEEcCHHHHHHHhh--hhhHHHHHHcCCEEecCceeEE
Confidence 577899999995 455667788887665 235578999888888765432 2336677778888887778763
No 262
>PRK09271 flavodoxin; Provisional
Probab=53.02 E-value=46 Score=29.30 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=33.8
Q ss_pred HHHHHHHHHhCCCeee-------------cCCCCCcEEEEeecccccch-HHHHHHHHHHHh---cCCCCEEEEccc
Q 013195 75 SEYMAGQLSAFGYALT-------------DNSEEADIWLINTCTVKSPS-QSAMDTLIAKCK---SAKKPLVVAGCV 134 (448)
Q Consensus 75 se~~~~~L~~~G~~~~-------------~~~~~aDvv~intctv~~~a-~~~~~~~i~~~~---~~~~~vVvgGc~ 134 (448)
.+.|+..|.+.|+++. .+..++|+++|-|.|.-... -..+...+..+. .+++++.+=|.+
T Consensus 18 A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 18 AREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred HHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 4567788888898752 12235799999777763321 122444444443 245555555554
No 263
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=52.88 E-value=3.4e+02 Score=29.61 Aligned_cols=49 Identities=14% Similarity=-0.011 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEecCCCCCC-CCCCCCHHHHHHHHHHhCC
Q 013195 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELP 271 (448)
Q Consensus 223 ~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg-~d~~~~l~~ll~~l~~~~~ 271 (448)
.++++.-+..+.+.|+..+.+.|..++.-. +-...+-.+.|+.+.+.++
T Consensus 25 t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~p 74 (596)
T PRK14042 25 TEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALP 74 (596)
T ss_pred HHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCC
Confidence 444555555555566666666655432110 0011233556666655554
No 264
>TIGR01227 hutG formimidoylglutamase. Formiminoglutamase, the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase.
Probab=52.69 E-value=2e+02 Score=28.35 Aligned_cols=157 Identities=15% Similarity=0.189 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCC-cceEEEeecCCcChhHH------HHHH
Q 013195 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG-STMLRIGMTNPPFILEH------LKEI 295 (448)
Q Consensus 223 ~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~-~~~iri~~~~p~~i~~~------l~el 295 (448)
.+.|-+.+..+.+.|..-|+|.|+...+|+ .++.+.+.++... ..-+.|. .|++.-+.. ---+
T Consensus 97 ~~~i~~~v~~~~~~g~~Pi~lGGdHsit~~---------~~~al~~~~~~~~~vgvi~~D-AH~D~~~~~~~~~~~g~~~ 166 (307)
T TIGR01227 97 QHEIAQTAAALLADHRVPVILGGGHSIAYA---------TFAALAQHYKGTTAIGVINFD-AHFDLRATEDGGPTSGTPF 166 (307)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCcchhHHH---------HHHHHHHhcCCCCeEEEEEEc-cCcCCCCCCCCCCCCchHH
Confidence 345555566677788888888777666653 3344444332001 2233332 222211100 0113
Q ss_pred HHHHhCCC--cccccccccCCCC--HHHHHhcCCC----CCHHHHHH-----HHHHHHHh---CCCC--EEEEEEE----
Q 013195 296 AEVLRHPC--VYSFLHVPVQSGS--DAVLSAMNRE----YTLSDFRT-----VVDTLIEL---VPGM--QIATDII---- 353 (448)
Q Consensus 296 ~~l~~~~~--~~~~l~iglES~s--~~vLk~m~R~----~t~e~~~~-----~i~~ir~~---~pgi--~i~~~~I---- 353 (448)
..++.... ..+.+++|+++.+ ++-.+.+++. ++.+++.+ +.+.+... ...+ .+..|.+
T Consensus 167 ~~~~~~~~~~~~~~~~iGiR~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~vyvs~DiDvlDps~ 246 (307)
T TIGR01227 167 RQILDECQIEDFHYAVLGIRRFSNTQALFDYAKKLGVRYVTDDALRPGLLPTIKDILPVFLDKVDHIYLTVDMDVLDAAH 246 (307)
T ss_pred HHHhhccCCCCCcEEEEEecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhCCCeEEEEEEecccChhh
Confidence 33333221 1358999999984 3334333221 24444433 23333332 1223 4444555
Q ss_pred ---EeCC---CCCHHHHHHHHHHHHhc-CCCeEEEEeceeCCC
Q 013195 354 ---CGFP---GETDEDFNQTVNLIKEY-KFPQVHISQFYPRPG 389 (448)
Q Consensus 354 ---vG~P---gET~ed~~~tl~~i~~l-~~~~v~i~~~~p~pG 389 (448)
+|.| |=|..++.+.++.+... ++-.+.+.-|.|...
T Consensus 247 aPgtg~p~pgGLt~~e~~~il~~l~~~~~vvg~DvvE~~P~~D 289 (307)
T TIGR01227 247 APGVSAPAPGGLYPDELLELVKRIAASDKVRGAEIAEVNPTLD 289 (307)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCEEEEEEEEECCCCC
Confidence 5555 56788888888887543 566677778888644
No 265
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=52.41 E-value=2.1e+02 Score=30.50 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=39.5
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEe
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~ 281 (448)
.+++.+++-++.+.+.|+..|.+-| .. |.-.+....+|+++|.+.++ ....+.+.
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkD-ta---Gll~P~~~~~LV~~Lk~~~~--~~ipI~~H 206 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKD-MA---ALLKPQPAYDIVKGIKEACG--EDTRINLH 206 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCC-Cc---cCCCHHHHHHHHHHHHHhCC--CCCeEEEE
Confidence 3899999999999999999999865 23 22223467889999987763 23445554
No 266
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=52.25 E-value=70 Score=25.24 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 013195 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (448)
Q Consensus 329 ~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~ 392 (448)
.+.+.+..+.+.+..|+..+...+.-+ +.-++.+.++-+.+.+.+.+.+.++.+.+|...
T Consensus 16 ~~~~~~~~~~l~~~~~~~~v~~a~~~~----~~P~i~~~l~~l~~~g~~~vvvvPl~~~~g~h~ 75 (101)
T cd03409 16 KKDIEAQAHNLAESLPDFPYYVGFQSG----LGPDTEEAIRELAEEGYQRVVIVPLAPVSGDEV 75 (101)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECC----CCCCHHHHHHHHHHcCCCeEEEEeCccccChhh
Confidence 356677777887776665555555555 233577788888888999999999999988754
No 267
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=52.24 E-value=2.5e+02 Score=29.50 Aligned_cols=123 Identities=11% Similarity=0.142 Sum_probs=67.4
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHh
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (448)
.+++.+++-++.+.+.|+..|.+.| ..+ .-.+....++++++.+.++ ..+.+.+=+-..+. +....+...
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~D-t~G---~l~P~~v~~lv~alk~~~~----~pi~~H~Hnt~GlA--~AN~laAie 220 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIKD-MAG---ILTPYVAYELVKRIKEAVT----VPLEVHTHATSGIA--EMTYLKAIE 220 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC-CCC---CCCHHHHHHHHHHHHHhcC----CeEEEEecCCCCcH--HHHHHHHHH
Confidence 6889999999999999999999875 232 2223467888999887653 33444321111111 111222233
Q ss_pred CCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 013195 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 301 ~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l 374 (448)
.+ +..++..+- -|..+...-.....+..++.. |+.. |+ +.+.+.+..++++++
T Consensus 221 aG--ad~vD~sv~--------glg~gaGN~~tE~lv~~L~~~--g~~t------gi---dl~~L~~~~~~~~~~ 273 (448)
T PRK12331 221 AG--ADIIDTAIS--------PFAGGTSQPATESMVAALQDL--GYDT------GL---DLEELSEIAEYFNPI 273 (448)
T ss_pred cC--CCEEEeecc--------ccCCCcCCHhHHHHHHHHHhc--CCCC------CC---CHHHHHHHHHHHHHH
Confidence 32 556666554 344444444555555556554 4432 22 345555555555444
No 268
>PRK15452 putative protease; Provisional
Probab=52.06 E-value=77 Score=33.14 Aligned_cols=82 Identities=12% Similarity=0.058 Sum_probs=55.7
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCC-CHHHHHHHHHHHH
Q 013195 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE-TDEDFNQTVNLIK 372 (448)
Q Consensus 294 el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgE-T~ed~~~tl~~i~ 372 (448)
.+.++...+ ...|.+|.++.+-+. -...++.+++.++++.++++ |..+...+ --+|.+ ..+.+.+.++.+.
T Consensus 15 ~l~aAi~~G--ADaVY~G~~~~~~R~---~~~~f~~edl~eav~~ah~~--g~kvyvt~-n~i~~e~el~~~~~~l~~l~ 86 (443)
T PRK15452 15 NMRYAFAYG--ADAVYAGQPRYSLRV---RNNEFNHENLALGINEAHAL--GKKFYVVV-NIAPHNAKLKTFIRDLEPVI 86 (443)
T ss_pred HHHHHHHCC--CCEEEECCCccchhh---hccCCCHHHHHHHHHHHHHc--CCEEEEEe-cCcCCHHHHHHHHHHHHHHH
Confidence 344444443 578999999888653 24578899999999999999 76543321 123443 3456666777777
Q ss_pred hcCCCeEEEEe
Q 013195 373 EYKFPQVHISQ 383 (448)
Q Consensus 373 ~l~~~~v~i~~ 383 (448)
++++|.+-+.-
T Consensus 87 ~~gvDgvIV~d 97 (443)
T PRK15452 87 AMKPDALIMSD 97 (443)
T ss_pred hCCCCEEEEcC
Confidence 88888777764
No 269
>PRK08005 epimerase; Validated
Probab=51.17 E-value=1.6e+02 Score=27.47 Aligned_cols=136 Identities=8% Similarity=0.101 Sum_probs=78.9
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEEE--EecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHH
Q 013195 220 SYTVESLVGRVRTVIADGVKEVWL--SSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~~--~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (448)
+-++-.+-+|++.+.+.|+..+.+ .|.++-. ....+ .+.++.+.+... ....+.+...+|... ++.+.+
T Consensus 9 ~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVP-N~tfG---~~~i~~l~~~t~--~~~DvHLMv~~P~~~---i~~~~~ 79 (210)
T PRK08005 9 SADPLRYAEALTALHDAPLGSLHLDIEDTSFIN-NITFG---MKTIQAVAQQTR--HPLSFHLMVSSPQRW---LPWLAA 79 (210)
T ss_pred hCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCC-ccccC---HHHHHHHHhcCC--CCeEEEeccCCHHHH---HHHHHH
Confidence 456678889999999999887664 3332211 00112 567777776433 234566655566532 222322
Q ss_pred HHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCC
Q 013195 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (448)
Q Consensus 298 l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~ 377 (448)
.+ +..+.+-+|+.. ...++++.+|+. |+.. .+-+. |+...+.++..+ .. +|
T Consensus 80 ---~g--ad~It~H~Ea~~--------------~~~~~l~~Ik~~--G~k~--GlAln-P~Tp~~~i~~~l---~~--vD 130 (210)
T PRK08005 80 ---IR--PGWIFIHAESVQ--------------NPSEILADIRAI--GAKA--GLALN-PATPLLPYRYLA---LQ--LD 130 (210)
T ss_pred ---hC--CCEEEEcccCcc--------------CHHHHHHHHHHc--CCcE--EEEEC-CCCCHHHHHHHH---Hh--cC
Confidence 22 457777788642 355788999998 7754 44444 665566655433 33 34
Q ss_pred eEEEEeceeCCCCcccCC
Q 013195 378 QVHISQFYPRPGTPAARM 395 (448)
Q Consensus 378 ~v~i~~~~p~pGT~~~~~ 395 (448)
. +..++..||..-..+
T Consensus 131 ~--VlvMsV~PGf~GQ~f 146 (210)
T PRK08005 131 A--LMIMTSEPDGRGQQF 146 (210)
T ss_pred E--EEEEEecCCCcccee
Confidence 4 456677888765443
No 270
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=51.15 E-value=1.9e+02 Score=27.89 Aligned_cols=130 Identities=19% Similarity=0.219 Sum_probs=69.2
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCC-CC---CCCHHHHHHHHHHhCCCCCcceEEEee-cCCcC---hhHH
Q 013195 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DI---GVNLPILLNAIVAELPPDGSTMLRIGM-TNPPF---ILEH 291 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~-d~---~~~l~~ll~~l~~~~~~~~~~~iri~~-~~p~~---i~~~ 291 (448)
.++..++...+..+...|++.|..+.+|....+. .. -..-.+|++.+.+.. + .++++. .+|+. ....
T Consensus 69 ~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~---~--~f~ig~a~~Peghp~~~~~ 143 (272)
T TIGR00676 69 GATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEF---G--DFDIGVAAYPEKHPEAPNL 143 (272)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhc---C--CeeEEEEeCCCCCCCCCCH
Confidence 4678889999999999999999855555554331 10 134567888876532 2 234432 34431 1111
Q ss_pred HHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHH
Q 013195 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 371 (448)
Q Consensus 292 l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i 371 (448)
..++..+.+. +..|. +-+.. .=-|+.+.+.+.++.+++. |+.+ =++.|+..=+ ....++.|+
T Consensus 144 ~~~~~~L~~K------~~aGA----~f~iT--Q~~fd~~~~~~~~~~~~~~--gi~~--PIi~Gi~p~~--s~k~~~~~~ 205 (272)
T TIGR00676 144 EEDIENLKRK------VDAGA----DYAIT--QLFFDNDDYYRFVDRCRAA--GIDV--PIIPGIMPIT--NFKQLLRFA 205 (272)
T ss_pred HHHHHHHHHH------HHcCC----CeEee--ccccCHHHHHHHHHHHHHc--CCCC--CEecccCCcC--CHHHHHHHH
Confidence 1112222211 11111 10000 1136788889999999988 7654 5777775422 223344454
Q ss_pred H
Q 013195 372 K 372 (448)
Q Consensus 372 ~ 372 (448)
.
T Consensus 206 ~ 206 (272)
T TIGR00676 206 E 206 (272)
T ss_pred h
Confidence 4
No 271
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=50.71 E-value=79 Score=27.03 Aligned_cols=57 Identities=25% Similarity=0.286 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEeC-CCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 013195 327 YTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (448)
Q Consensus 327 ~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~-PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~ 392 (448)
.+.+.+.++++.++++ |+.- .-+|+|- +.-..+++.+..+.+++++++.++ -|||+.
T Consensus 62 ~~~~~~~~~~~~l~~~--gl~~-v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf------~pgt~~ 119 (128)
T cd02072 62 HGEIDCKGLREKCDEA--GLKD-ILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVF------APGTPP 119 (128)
T ss_pred CCHHHHHHHHHHHHHC--CCCC-CeEEEECCCCCChhhhHHHHHHHHHcCCCEEE------CcCCCH
Confidence 4567888999999998 7632 4466665 334677888888999999998653 256654
No 272
>PLN02540 methylenetetrahydrofolate reductase
Probab=49.56 E-value=2e+02 Score=31.15 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=35.0
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC----C--CCHHHHHHHHHHh
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI----G--VNLPILLNAIVAE 269 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~----~--~~l~~ll~~l~~~ 269 (448)
|.++.++|.+.+..+.+.|++.|..+.+|....+... + ....+|++.|.+.
T Consensus 68 rd~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~ 124 (565)
T PLN02540 68 TNMPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSK 124 (565)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHh
Confidence 3456778888888899999999976655655433211 1 2467888888764
No 273
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=49.51 E-value=2.5e+02 Score=27.15 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=18.8
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHhCCC
Q 013195 320 LSAMNREYTLSDFRTVVDTLIELVPG 345 (448)
Q Consensus 320 Lk~m~R~~t~e~~~~~i~~ir~~~pg 345 (448)
++.++.++|.++..+.++.+|+..++
T Consensus 69 ~rAL~~g~t~~~~lel~~~~r~~~~~ 94 (265)
T COG0159 69 LRALAAGVTLEDTLELVEEIRAKGVK 94 (265)
T ss_pred HHHHHCCCCHHHHHHHHHHHHhcCCC
Confidence 45666788888888888888866333
No 274
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=49.50 E-value=2.2e+02 Score=26.48 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=69.9
Q ss_pred HHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcc
Q 013195 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 305 (448)
Q Consensus 226 Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~ 305 (448)
.++-++.+.+.|++++.+++-+....+.. . -.++++++.+... ..+.++ -.+..+. ++..+... + +
T Consensus 32 p~~~a~~~~~~g~~~i~i~dl~~~~~~~~--~-n~~~~~~i~~~~~----~pv~~~-ggi~~~~----d~~~~~~~-G-~ 97 (232)
T TIGR03572 32 PVNAARIYNAKGADELIVLDIDASKRGRE--P-LFELISNLAEECF----MPLTVG-GGIRSLE----DAKKLLSL-G-A 97 (232)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCcccCCC--C-CHHHHHHHHHhCC----CCEEEE-CCCCCHH----HHHHHHHc-C-C
Confidence 34444555678999999998665433322 2 2578888876542 233333 2333222 23334333 2 5
Q ss_pred cccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC--CEEEEEEEEeCCC------------CCHHHHHHHHHHH
Q 013195 306 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG--MQIATDIICGFPG------------ETDEDFNQTVNLI 371 (448)
Q Consensus 306 ~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pg--i~i~~~~IvG~Pg------------ET~ed~~~tl~~i 371 (448)
..+.+|-.. ++ +.+ .++.+.+.+++ +.++.|+--|+++ ++..+..+.++.+
T Consensus 98 ~~vilg~~~-----l~------~~~----~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 162 (232)
T TIGR03572 98 DKVSINTAA-----LE------NPD----LIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREA 162 (232)
T ss_pred CEEEEChhH-----hc------CHH----HHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHH
Confidence 566666222 11 122 33333333332 5667776554221 2334455666777
Q ss_pred HhcCCCeEEEEecee
Q 013195 372 KEYKFPQVHISQFYP 386 (448)
Q Consensus 372 ~~l~~~~v~i~~~~p 386 (448)
.+.+.+.+.++..++
T Consensus 163 ~~~G~d~i~i~~i~~ 177 (232)
T TIGR03572 163 EQLGAGEILLNSIDR 177 (232)
T ss_pred HHcCCCEEEEeCCCc
Confidence 888888888877544
No 275
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=48.14 E-value=2.4e+02 Score=26.47 Aligned_cols=136 Identities=10% Similarity=0.042 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCC
Q 013195 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPC 303 (448)
Q Consensus 224 e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~ 303 (448)
.+.++-++.+.+.|+.++.+++-+...++. ....++++++.+... ..-+--+-+. .. +++..+...+
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~---~~~~~~i~~i~~~~~---~pv~~~GGI~--s~----~d~~~~l~~G- 93 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASSEGR---ETMLDVVERVAEEVF---IPLTVGGGIR--SL----EDARRLLRAG- 93 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCcccccC---cccHHHHHHHHHhCC---CCEEEeCCCC--CH----HHHHHHHHcC-
Confidence 355566666778899999999865432222 224688888887642 1111111111 11 2233444332
Q ss_pred cccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEe-----------CCCCCHHHHHHHHHHHH
Q 013195 304 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG-----------FPGETDEDFNQTVNLIK 372 (448)
Q Consensus 304 ~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG-----------~PgET~ed~~~tl~~i~ 372 (448)
+..+.+|-... .+++.+.+.++.+... .+.++.|+-.+ -+.+|..+..+.+..+.
T Consensus 94 -~~~v~ig~~~~-----------~~p~~~~~i~~~~~~~--~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~ 159 (243)
T cd04731 94 -ADKVSINSAAV-----------ENPELIREIAKRFGSQ--CVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVE 159 (243)
T ss_pred -CceEEECchhh-----------hChHHHHHHHHHcCCC--CEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHH
Confidence 45565652211 1234444444443222 36677775533 23455666666677778
Q ss_pred hcCCCeEEEEecee
Q 013195 373 EYKFPQVHISQFYP 386 (448)
Q Consensus 373 ~l~~~~v~i~~~~p 386 (448)
+.+++.+.++....
T Consensus 160 ~~G~d~i~v~~i~~ 173 (243)
T cd04731 160 ELGAGEILLTSMDR 173 (243)
T ss_pred HCCCCEEEEeccCC
Confidence 88999888877554
No 276
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=47.87 E-value=79 Score=26.76 Aligned_cols=61 Identities=10% Similarity=0.191 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEEEEEeC-------CCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCc
Q 013195 331 DFRTVVDTLIELVPGMQIATDIICGF-------PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 391 (448)
Q Consensus 331 ~~~~~i~~ir~~~pgi~i~~~~IvG~-------PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~ 391 (448)
.+....+.+++.+|+..+..-|+-.. .|....++.+.++-+.+.+..++.+.++...||-.
T Consensus 18 ~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e 85 (127)
T cd03412 18 TIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHIIPGEE 85 (127)
T ss_pred HHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCeeECcHH
Confidence 45556666666677766665555200 01122345566666777777777777777777743
No 277
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=47.42 E-value=35 Score=30.35 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=41.1
Q ss_pred EecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEE
Q 013195 64 KTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVV 130 (448)
Q Consensus 64 ~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVv 130 (448)
-+-||+++..--+.-...++.. -.+.+|++|||=..=.+..-.-++..+..+-..|.+|++
T Consensus 68 gs~gCrLD~~~La~A~~~l~~a------l~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt 128 (159)
T PF10649_consen 68 GSRGCRLDPGALAEASAALRRA------LAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLT 128 (159)
T ss_pred CCcccccCHHHHHHHHHHHHHH------HhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEE
Confidence 4569999987766666666543 235699999997664433334466677777677887765
No 278
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=47.40 E-value=1.9e+02 Score=27.42 Aligned_cols=35 Identities=29% Similarity=0.460 Sum_probs=30.9
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCC
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR 253 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~ 253 (448)
-+.+.|+|++.+....+.|-.-+.+.+.|...||.
T Consensus 57 a~~tLeeIi~~m~~a~~~Gk~VvRLhSGDpsiYgA 91 (254)
T COG2875 57 ASLTLEEIIDLMVDAVREGKDVVRLHSGDPSIYGA 91 (254)
T ss_pred CcCCHHHHHHHHHHHHHcCCeEEEeecCChhHHHH
Confidence 46789999999999999998888999999999974
No 279
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=47.28 E-value=1e+02 Score=25.44 Aligned_cols=70 Identities=16% Similarity=0.243 Sum_probs=45.1
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecC------------CCCCcEEEEeecccccchHHHHHHHHHHHhcCCC
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK 126 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~ 126 (448)
+++++ +||..+..=...++..|...|.....- ..+-|++++ ++..... ..+.+.++.++++|.
T Consensus 14 ~~i~i--~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--iS~~g~~-~~~~~~~~~a~~~g~ 88 (139)
T cd05013 14 RRIYI--FGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIA--ISFSGET-KETVEAAEIAKERGA 88 (139)
T ss_pred CEEEE--EEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEE--EeCCCCC-HHHHHHHHHHHHcCC
Confidence 44444 577778888888888999888654321 234467766 3443333 346777888888888
Q ss_pred CEE-EEcc
Q 013195 127 PLV-VAGC 133 (448)
Q Consensus 127 ~vV-vgGc 133 (448)
++| +++-
T Consensus 89 ~iv~iT~~ 96 (139)
T cd05013 89 KVIAITDS 96 (139)
T ss_pred eEEEEcCC
Confidence 765 5554
No 280
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=47.02 E-value=91 Score=26.86 Aligned_cols=58 Identities=24% Similarity=0.252 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEEEEEeC-CCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 013195 326 EYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (448)
Q Consensus 326 ~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~-PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~ 392 (448)
+.+.+.+.+.++.+++. |+.-. -+|+|= |.-.++|+.+-.+.+++++++.++ -|||++
T Consensus 63 ~~~~~~~~~~~~~l~~~--gl~~~-~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF------~pgt~~ 121 (134)
T TIGR01501 63 GHGEIDCKGLRQKCDEA--GLEGI-LLYVGGNLVVGKQDFPDVEKRFKEMGFDRVF------APGTPP 121 (134)
T ss_pred ccCHHHHHHHHHHHHHC--CCCCC-EEEecCCcCcChhhhHHHHHHHHHcCCCEEE------CcCCCH
Confidence 46777889999999998 76322 256664 234567776666777899987653 256654
No 281
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=46.82 E-value=1e+02 Score=27.38 Aligned_cols=73 Identities=12% Similarity=0.233 Sum_probs=47.1
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeee-------cCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-------DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV- 129 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~-------~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vV- 129 (448)
.++||+. ||..+..=.+++...|...|.... ....+-|++++=|.+ ..+ ..+.+.++.++++|.+||
T Consensus 30 a~~I~i~--G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS~s--G~t-~~~i~~~~~ak~~g~~ii~ 104 (179)
T TIGR03127 30 AKRIFVA--GAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDLLIAISGS--GET-ESLVTVAKKAKEIGATVAA 104 (179)
T ss_pred CCEEEEE--ecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCEEEEEeCC--CCc-HHHHHHHHHHHHCCCeEEE
Confidence 3456655 555677778888888988886653 223455787774433 332 346777888888997755
Q ss_pred EEcccc
Q 013195 130 VAGCVP 135 (448)
Q Consensus 130 vgGc~a 135 (448)
+++-..
T Consensus 105 IT~~~~ 110 (179)
T TIGR03127 105 ITTNPE 110 (179)
T ss_pred EECCCC
Confidence 666433
No 282
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=46.75 E-value=46 Score=30.81 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=33.9
Q ss_pred hHHHHHHHHHH-hCCCeee--cC--------CCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccc
Q 013195 73 SDSEYMAGQLS-AFGYALT--DN--------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCV 134 (448)
Q Consensus 73 ~dse~~~~~L~-~~G~~~~--~~--------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~ 134 (448)
.-.+.|+..|+ +.||+++ ++ .+++|+||+|+|.-..... ...+.++++-+.|..+| |.|
T Consensus 19 ~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~~~~l~~-~~~~al~~~v~~Ggglv--~lH 88 (217)
T PF06283_consen 19 AAKKALAQLLEESEGFEVTVTEDPDDLTPENLKGYDVVVFYNTGGDELTD-EQRAALRDYVENGGGLV--GLH 88 (217)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCSGGCTSHHCHCT-SEEEEE-SSCCGS-H-HHHHHHHHHHHTT-EEE--EEG
T ss_pred HHHHHHHHHhccCCCEEEEEEeCcccCChhHhcCCCEEEEECCCCCcCCH-HHHHHHHHHHHcCCCEE--EEc
Confidence 34567888888 6799875 22 3679999999998211222 22344555555776555 355
No 283
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=46.05 E-value=77 Score=28.30 Aligned_cols=55 Identities=18% Similarity=0.177 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecee
Q 013195 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386 (448)
Q Consensus 329 ~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p 386 (448)
.+...++.+.+++.+||+.+....- |+ -++++-++.++.+.+.++|.+.+..=+|
T Consensus 58 ~~~~~~~~~~l~~~yP~l~ivg~~~-g~--f~~~~~~~i~~~I~~~~pdiv~vglG~P 112 (172)
T PF03808_consen 58 EEVLEKAAANLRRRYPGLRIVGYHH-GY--FDEEEEEAIINRINASGPDIVFVGLGAP 112 (172)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecC-CC--CChhhHHHHHHHHHHcCCCEEEEECCCC
Confidence 4456677888999999987654322 21 2777888899999999999877755333
No 284
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=45.83 E-value=25 Score=34.39 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=34.1
Q ss_pred HHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhc-CCCCEE-EE--ccccccc
Q 013195 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKS-AKKPLV-VA--GCVPQGS 138 (448)
Q Consensus 78 ~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~-~~~~vV-vg--Gc~a~~~ 138 (448)
+...|++.|.. +.+-|++|+|+|+|.-.. .=..-++++++= .+.+.+ ++ ||.|..-
T Consensus 91 v~~LL~ktgv~----p~dIdiLVvncs~f~ptP-SLsamIvnr~~mr~di~~~nLsGMGCsAgli 150 (290)
T PF08392_consen 91 VDDLLAKTGVK----PSDIDILVVNCSLFNPTP-SLSAMIVNRYGMRSDIKSYNLSGMGCSAGLI 150 (290)
T ss_pred HHHHHHHcCCC----HHHCCEEEEECcCCCcCC-cHHHHHHHHhCCCcCeeeecccCCcchhhHH
Confidence 45667777744 578999999999985432 122345677752 244333 33 6887654
No 285
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=44.64 E-value=2.7e+02 Score=26.12 Aligned_cols=130 Identities=12% Similarity=0.086 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCc
Q 013195 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (448)
Q Consensus 225 ~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~ 304 (448)
+-++-++.+.+.|+++++++|-|-. .|.+ .-.++++++.+... ..+.++- .-. ..+++.+++..+
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~-~~~~---~n~~~i~~i~~~~~----~~v~vgG-Gir----~~edv~~~l~~G-- 100 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAI-MGRG---DNDEAIRELAAAWP----LGLWVDG-GIR----SLENAQEWLKRG-- 100 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccc-cCCC---ccHHHHHHHHHhCC----CCEEEec-CcC----CHHHHHHHHHcC--
Confidence 4556667777889999999987643 2432 33678888887542 2233331 111 123344555443
Q ss_pred ccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC--CCEEEEEEEEeCC--CCCHHHHHHHHHHHHhcCCCeEE
Q 013195 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP--GMQIATDIICGFP--GETDEDFNQTVNLIKEYKFPQVH 380 (448)
Q Consensus 305 ~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~p--gi~i~~~~IvG~P--gET~ed~~~tl~~i~~l~~~~v~ 380 (448)
+.++.+|-++.+++ .++.+-+.++ .+.++.|+-=|.- ..+..+..+.++.+.+. ++.++
T Consensus 101 a~~viigt~~~~~~----------------~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li 163 (233)
T cd04723 101 ASRVIVGTETLPSD----------------DDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELI 163 (233)
T ss_pred CCeEEEcceeccch----------------HHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEE
Confidence 56777887776542 2222223333 3566666643310 13455677778888888 87777
Q ss_pred EEecee
Q 013195 381 ISQFYP 386 (448)
Q Consensus 381 i~~~~p 386 (448)
+.-...
T Consensus 164 ~~di~~ 169 (233)
T cd04723 164 VLDIDR 169 (233)
T ss_pred EEEcCc
Confidence 765543
No 286
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.15 E-value=1.2e+02 Score=29.35 Aligned_cols=60 Identities=8% Similarity=0.112 Sum_probs=40.5
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~ 123 (448)
|.++.+..-..+....=.+.+...|++.|+++..+..++|++++- -.+-.+...++++..
T Consensus 2 ~~~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~~~~~D~vi~l------GGDGT~L~a~~~~~~ 61 (264)
T PRK03501 2 RRNLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDHPKNANIIVSI------GGDGTFLQAVRKTGF 61 (264)
T ss_pred CcEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcCCCCccEEEEE------CCcHHHHHHHHHhcc
Confidence 456778777777333345567778999999988766778988772 234456666666543
No 287
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=44.15 E-value=1e+02 Score=25.76 Aligned_cols=60 Identities=7% Similarity=0.112 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEE-EeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccc
Q 013195 329 LSDFRTVVDTLIELVPGMQIATDII-CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393 (448)
Q Consensus 329 ~e~~~~~i~~ir~~~pgi~i~~~~I-vG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~ 393 (448)
.+.+.+..+.+++..++..+.+.|+ ++-| ++.+.++.+.+.+...+.+.+|.-.+|--..
T Consensus 17 ~~~~~~~~~~l~~~~~~~~v~~afle~~~P-----~l~~~l~~l~~~g~~~v~vvPlfl~~G~h~~ 77 (126)
T PRK00923 17 KEVVTKIAEKIKEKHPFYIVEVGFMEFNEP-----TIPEALKKLIGTGADKIIVVPVFLAHGVHTK 77 (126)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEEEcCCC-----CHHHHHHHHHHcCCCEEEEEchhhccCcccc
Confidence 3677777888887766667776666 3555 6888898888999999999999999997554
No 288
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=43.78 E-value=35 Score=26.66 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCeeecCCC-----CCcEEEEe
Q 013195 77 YMAGQLSAFGYALTDNSE-----EADIWLIN 102 (448)
Q Consensus 77 ~~~~~L~~~G~~~~~~~~-----~aDvv~in 102 (448)
-+...|++.||++++-.. .+|.++|+
T Consensus 12 ~v~~~L~~~GyeVv~l~~~~~~~~~daiVvt 42 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLENEQDLQNVDAIVVT 42 (80)
T ss_pred HHHHHHHHCCCEEEecCCccccCCcCEEEEE
Confidence 378899999999987533 46777763
No 289
>PRK10812 putative DNAse; Provisional
Probab=43.21 E-value=1.4e+02 Score=28.73 Aligned_cols=107 Identities=13% Similarity=0.146 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcCh--hHHHHHHHHHH
Q 013195 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI--LEHLKEIAEVL 299 (448)
Q Consensus 222 ~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i--~~~l~el~~l~ 299 (448)
+.+++++++ .+.|+..++.++.+...+ .. ..++.+..+ ..+..++ ++|..+ ...++++.+++
T Consensus 21 d~~~vl~~a---~~~gv~~~~~~~~~~~~~--------~~-~~~l~~~~~---~v~~~~G-iHP~~~~~~~~~~~l~~~~ 84 (265)
T PRK10812 21 DVDDVLAKA---AARDVKFCLAVATTLPGY--------RH-MRDLVGERD---NVVFSCG-VHPLNQDEPYDVEELRRLA 84 (265)
T ss_pred CHHHHHHHH---HHcCCCEEEEeCCCHHHH--------HH-HHHHHhhCC---CeEEEEE-eCCCCCCChhHHHHHHHHh
Confidence 566666665 467998888777543221 22 233444443 3556677 788765 23455566666
Q ss_pred hCCCccccc-ccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Q 013195 300 RHPCVYSFL-HVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351 (448)
Q Consensus 300 ~~~~~~~~l-~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~ 351 (448)
.++. +..| .+|+.-.-+. -.+..-.+-+...++.+++. +..+...
T Consensus 85 ~~~~-vvaIGEiGLD~~~~~----~~~~~Q~~vf~~ql~lA~e~--~~Pv~iH 130 (265)
T PRK10812 85 AEEG-VVAMGETGLDYYYTP----ETKVRQQESFRHHIQIGREL--NKPVIVH 130 (265)
T ss_pred cCCC-EEEEEeeecCcCCCC----CCHHHHHHHHHHHHHHHHHh--CCCeEEE
Confidence 5554 3345 5676643100 00111224456667777777 6555444
No 290
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=43.18 E-value=1e+02 Score=30.33 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=48.5
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeec------------CCCCCcEEEEeecccccchHHHHHHHHHHHhcCCC
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD------------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK 126 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~------------~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~ 126 (448)
++|||...| .+..=.++++..|...|+.... ...+-|++++= |....+ ..+.+.++.+|++|.
T Consensus 43 ~~I~i~G~G--~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~i--S~sG~t-~~~~~~~~~ak~~g~ 117 (321)
T PRK11543 43 GKVVVSGIG--KSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFI--SYSGGA-KELDLIIPRLEDKSI 117 (321)
T ss_pred CcEEEEecC--hhHHHHHHHHHHHHcCCCceeecChHHHhhCCcCccCCCCEEEEE--eCCCCc-HHHHHHHHHHHHcCC
Confidence 367776665 7777888899999999986531 13455888773 333333 347788899999998
Q ss_pred CEE-EEccc
Q 013195 127 PLV-VAGCV 134 (448)
Q Consensus 127 ~vV-vgGc~ 134 (448)
+|| ++|-.
T Consensus 118 ~vI~iT~~~ 126 (321)
T PRK11543 118 ALLAMTGKP 126 (321)
T ss_pred eEEEEECCC
Confidence 765 66643
No 291
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=42.97 E-value=1.5e+02 Score=27.77 Aligned_cols=136 Identities=14% Similarity=0.188 Sum_probs=78.0
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEEE--EecCCCCCCCCCCCCHHHHHHHHHHh-CCCCCcceEEEeecCCcChhHHHHHHH
Q 013195 220 SYTVESLVGRVRTVIADGVKEVWL--SSEDTGAYGRDIGVNLPILLNAIVAE-LPPDGSTMLRIGMTNPPFILEHLKEIA 296 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~~--~~~~~~~yg~d~~~~l~~ll~~l~~~-~~~~~~~~iri~~~~p~~i~~~l~el~ 296 (448)
+.+.-.+-+|++.+.+.|+..+.+ .|.++-. ....+ .+.++.+.+. .. -...+.+...+|.... +.+.
T Consensus 8 ~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvp-n~tfg---~~~i~~i~~~~~~--~~~dvHLMv~~p~~~i---~~~~ 78 (220)
T PRK08883 8 SADFARLGEDVEKVLAAGADVVHFDVMDNHYVP-NLTFG---APICKALRDYGIT--APIDVHLMVKPVDRII---PDFA 78 (220)
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEEecccCcccC-ccccC---HHHHHHHHHhCCC--CCEEEEeccCCHHHHH---HHHH
Confidence 445678889999999999887664 3433211 01112 5677777654 22 2345666545664322 2222
Q ss_pred HHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCC
Q 013195 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376 (448)
Q Consensus 297 ~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~ 376 (448)
+. + +..+.+-+|+. .+..+.++.+|+. |+.. .+.+. |+-..+.++.. +.. .
T Consensus 79 ---~~-g-ad~i~~H~Ea~--------------~~~~~~l~~ik~~--g~k~--Glaln-P~Tp~~~i~~~---l~~--~ 129 (220)
T PRK08883 79 ---KA-G-ASMITFHVEAS--------------EHVDRTLQLIKEH--GCQA--GVVLN-PATPLHHLEYI---MDK--V 129 (220)
T ss_pred ---Hh-C-CCEEEEcccCc--------------ccHHHHHHHHHHc--CCcE--EEEeC-CCCCHHHHHHH---HHh--C
Confidence 22 2 46777778863 2366788899998 7654 33443 55555555433 333 3
Q ss_pred CeEEEEeceeCCCCcccCC
Q 013195 377 PQVHISQFYPRPGTPAARM 395 (448)
Q Consensus 377 ~~v~i~~~~p~pGT~~~~~ 395 (448)
|.+ ..++-.||+.-..+
T Consensus 130 D~v--lvMtV~PGfgGq~f 146 (220)
T PRK08883 130 DLI--LLMSVNPGFGGQSF 146 (220)
T ss_pred CeE--EEEEecCCCCCcee
Confidence 444 44688889876543
No 292
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=42.38 E-value=1.3e+02 Score=26.79 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=47.7
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeec-------CCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-E
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD-------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~-------~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vV-v 130 (448)
++|++. ||..+..=.+++...|...|..+.. ...+-|++++= |+...+ ..+...++.+++.|.+|| +
T Consensus 34 ~~I~i~--G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~i--S~sG~t-~~~i~~~~~ak~~g~~iI~I 108 (179)
T cd05005 34 KRIFVY--GAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAI--SGSGET-SSVVNAAEKAKKAGAKVVLI 108 (179)
T ss_pred CeEEEE--ecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEE--cCCCCc-HHHHHHHHHHHHCCCeEEEE
Confidence 566665 5556677788888888888866532 12345777763 343333 346778889998997754 7
Q ss_pred Eccccc
Q 013195 131 AGCVPQ 136 (448)
Q Consensus 131 gGc~a~ 136 (448)
++....
T Consensus 109 T~~~~s 114 (179)
T cd05005 109 TSNPDS 114 (179)
T ss_pred ECCCCC
Confidence 776544
No 293
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=42.32 E-value=3.5e+02 Score=26.73 Aligned_cols=133 Identities=15% Similarity=0.264 Sum_probs=74.4
Q ss_pred HHHHHHHHHCCCcEEEEEecCCCCCCCC----CCCCH----HHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHH
Q 013195 227 VGRVRTVIADGVKEVWLSSEDTGAYGRD----IGVNL----PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (448)
Q Consensus 227 v~ei~~l~~~G~~ei~~~~~~~~~yg~d----~~~~l----~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (448)
++.++.+++.|++.+.++-..-+.++.. ....| .++++++.+ + ...+-+ .+.. .....++.++
T Consensus 116 ~~~l~~~~~lGvR~i~Lt~n~~N~~a~g~~~~~~~GLt~~G~~vv~~mn~-l----GmiiDv--SH~s--~~~~~dv~~~ 186 (309)
T cd01301 116 LALLRLLYRLGVRYLGLTWNGDNKFADGCGEKRGGGLTPFGKELVREMNR-L----GIIIDL--SHLS--ERTFWDVLDI 186 (309)
T ss_pred HHHHHHHHHcCCeEEEeeecCCCccccCCCCCCCCCCCHHHHHHHHHHHH-c----CCEEEc--CCCC--HHHHHHHHHh
Confidence 6788899999999999885444444321 11223 345555543 2 123333 2321 1122223344
Q ss_pred HhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeC----CCCCHHHHHHHHHHHHhc
Q 013195 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF----PGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 299 ~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~----PgET~ed~~~tl~~i~~l 374 (448)
.+.|-+ +=+.+.+.+..-.|..+-+++. .+.+. |=.+...+.-+| +.-|.+++.+.++.+.++
T Consensus 187 s~~Pvi-------aSHsn~ral~~h~RNltD~~i~----~ia~~--GGvigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l 253 (309)
T cd01301 187 SNAPVI-------ASHSNARALCDHPRNLTDAQLK----AIAET--GGVIGVNFYPAFLSPGADATLDDVVRHIDYIVDL 253 (309)
T ss_pred cCCCEE-------EeccChHHhcCCCCCCCHHHHH----HHHHc--CCEEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHh
Confidence 433322 2244555565566777766554 44555 545555555444 367889999999988775
Q ss_pred -CCCeEEE
Q 013195 375 -KFPQVHI 381 (448)
Q Consensus 375 -~~~~v~i 381 (448)
+.+++.+
T Consensus 254 ~G~dhVgi 261 (309)
T cd01301 254 IGIDHVGL 261 (309)
T ss_pred cCCCeEEE
Confidence 7787766
No 294
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=40.75 E-value=84 Score=29.13 Aligned_cols=65 Identities=23% Similarity=0.269 Sum_probs=40.0
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC-----CCHHHHHHHHHHhCCCCCcceEEEeecCCc
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~-----~~l~~ll~~l~~~~~~~~~~~iri~~~~p~ 286 (448)
+..+.++.+++++.+.+.|..-|-+-++.+........ ..+..+++.+.+.. ....+.+.+.+|.
T Consensus 14 ~~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~---~~~plSIDT~~~~ 83 (210)
T PF00809_consen 14 RKFSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREEN---PDVPLSIDTFNPE 83 (210)
T ss_dssp CHHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHH---TTSEEEEEESSHH
T ss_pred cccCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccC---CCeEEEEECCCHH
Confidence 34456888899999999999988886654433222110 24555556665411 2467888877775
No 295
>PRK03094 hypothetical protein; Provisional
Probab=40.17 E-value=44 Score=26.07 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=19.9
Q ss_pred HHHHHHhCCCeeecCC-----CCCcEEEEee
Q 013195 78 MAGQLSAFGYALTDNS-----EEADIWLINT 103 (448)
Q Consensus 78 ~~~~L~~~G~~~~~~~-----~~aDvv~int 103 (448)
+...|++.||++++-. ..+|.++|..
T Consensus 13 i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG 43 (80)
T PRK03094 13 VQQALKQKGYEVVQLRSEQDAQGCDCCVVTG 43 (80)
T ss_pred HHHHHHHCCCEEEecCcccccCCcCEEEEeC
Confidence 7899999999998643 3477887743
No 296
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=39.88 E-value=45 Score=35.64 Aligned_cols=55 Identities=11% Similarity=0.227 Sum_probs=38.0
Q ss_pred HHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEcccccc
Q 013195 82 LSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137 (448)
Q Consensus 82 L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~ 137 (448)
+++.|.-+|.-.- .-+|.+-+|.=.....+.++.+++.+.++|--||++||+|-.
T Consensus 487 IR~vG~PiV~G~I-PGIia~vgC~nyp~g~k~v~~iaeefl~RnyiVvttGC~Am~ 541 (772)
T COG1152 487 IRNVGVPIVMGTI-PGIIAVIGCPNYPAGTKDVYKIAEEFLKRNYIVVTTGCIAMD 541 (772)
T ss_pred HhhcCCceeecCC-CeEEEEecCCCCCcchhhHHHHHHHHHHcCeEEEecchhhhh
Confidence 3444554444322 345666689865555678899999999988889999999854
No 297
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=39.23 E-value=2.6e+02 Score=26.51 Aligned_cols=136 Identities=10% Similarity=0.070 Sum_probs=72.7
Q ss_pred HHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccc
Q 013195 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 307 (448)
Q Consensus 228 ~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~ 307 (448)
+-.+.+.++|-+|+.+-.+... ..+.+-+.++.+. ...-+.+.+.+|+.+. ++..+.... +..
T Consensus 33 ~a~~~~~~rgr~ef~~~~e~~~-------~~i~~e~~~~~~~----~~vivnv~~~~~ee~~----~~a~~v~~~--~d~ 95 (231)
T TIGR00736 33 KASRDIEKRGRKEFSFNLEEFN-------SYIIEQIKKAESR----ALVSVNVRFVDLEEAY----DVLLTIAEH--ADI 95 (231)
T ss_pred HHHHHHHHcCCcccCcCcccHH-------HHHHHHHHHHhhc----CCEEEEEecCCHHHHH----HHHHHHhcC--CCE
Confidence 3445677889888643111100 1122333333211 2234444444554322 233333322 456
Q ss_pred cccccCCCCHHHHHhcCC---CCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEec
Q 013195 308 LHVPVQSGSDAVLSAMNR---EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384 (448)
Q Consensus 308 l~iglES~s~~vLk~m~R---~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~ 384 (448)
+.|.+=...+++.+.=.- ..+.+.+.+.++.+++. ++.++.=+=.|. +.++..+..+.+++.+.+.+++...
T Consensus 96 IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~---~~~~~~~~a~~l~~aGad~i~Vd~~ 170 (231)
T TIGR00736 96 IEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNC---IPLDELIDALNLVDDGFDGIHVDAM 170 (231)
T ss_pred EEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCC---CcchHHHHHHHHHHcCCCEEEEeeC
Confidence 666655555544421110 13778888888888866 666655555454 3345556777788999999999754
Q ss_pred e
Q 013195 385 Y 385 (448)
Q Consensus 385 ~ 385 (448)
.
T Consensus 171 ~ 171 (231)
T TIGR00736 171 Y 171 (231)
T ss_pred C
Confidence 4
No 298
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=39.23 E-value=3.3e+02 Score=25.45 Aligned_cols=131 Identities=11% Similarity=0.076 Sum_probs=68.4
Q ss_pred HHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcc
Q 013195 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 305 (448)
Q Consensus 226 Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~ 305 (448)
.++-++.+.+.|++++.+.+-+...-+. ....++++++.+... ..+.++ ...... +++..++..+ +
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~~~~---~~~~~~i~~i~~~~~----~~l~v~-GGi~~~----~~~~~~~~~G--a 99 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAFEGE---RKNAEAIEKIIEAVG----VPVQLG-GGIRSA----EDAASLLDLG--V 99 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhhcCC---cccHHHHHHHHHHcC----CcEEEc-CCcCCH----HHHHHHHHcC--C
Confidence 3455555677899999998765432222 245678888877542 233332 111111 2233334332 5
Q ss_pred cccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC--CCEEEEEEE------EeCCCCCHHHHHHHHHHHHhcCCC
Q 013195 306 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP--GMQIATDII------CGFPGETDEDFNQTVNLIKEYKFP 377 (448)
Q Consensus 306 ~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~p--gi~i~~~~I------vG~PgET~ed~~~tl~~i~~l~~~ 377 (448)
..+++|-.... +.+.+ ..+.+.++ .+.++.|+. -|.-.++..+..+..+.+.+.+++
T Consensus 100 ~~v~iGs~~~~-----------~~~~~----~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~ 164 (241)
T PRK13585 100 DRVILGTAAVE-----------NPEIV----RELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAG 164 (241)
T ss_pred CEEEEChHHhh-----------ChHHH----HHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCC
Confidence 67888754432 12223 33333332 244444432 233333333566677777888998
Q ss_pred eEEEEece
Q 013195 378 QVHISQFY 385 (448)
Q Consensus 378 ~v~i~~~~ 385 (448)
.++++...
T Consensus 165 ~i~~~~~~ 172 (241)
T PRK13585 165 SILFTNVD 172 (241)
T ss_pred EEEEEeec
Confidence 88776654
No 299
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=38.89 E-value=3.4e+02 Score=25.62 Aligned_cols=153 Identities=7% Similarity=0.052 Sum_probs=88.8
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEE--EecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWL--SSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~--~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~ 296 (448)
-+.+.-.+-+|++.+.+.|+..+.+ .|.++-. ....+ ...++.+.+. ....+.+...+|.. .++.+.
T Consensus 20 l~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVP-NitfG---p~~i~~i~~~----~~~DvHLMv~~P~~---~i~~~~ 88 (228)
T PRK08091 20 LASNWLKFNETLTTLSENQLRLLHFDIADGQFSP-FFTVG---AIAIKQFPTH----CFKDVHLMVRDQFE---VAKACV 88 (228)
T ss_pred hhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCC-ccccC---HHHHHHhCCC----CCEEEEeccCCHHH---HHHHHH
Confidence 3456778899999999999887764 3322211 00112 4566666432 22455665556642 222222
Q ss_pred HHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCC
Q 013195 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376 (448)
Q Consensus 297 ~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~ 376 (448)
+.+ +..+.+-+|+.. +..++++.+|+. |+.+.+.+.+. |+-..+.++..++ . +
T Consensus 89 ---~aG--ad~It~H~Ea~~--------------~~~~~l~~Ik~~--g~~~kaGlaln-P~Tp~~~i~~~l~---~--v 141 (228)
T PRK08091 89 ---AAG--ADIVTLQVEQTH--------------DLALTIEWLAKQ--KTTVLIGLCLC-PETPISLLEPYLD---Q--I 141 (228)
T ss_pred ---HhC--CCEEEEcccCcc--------------cHHHHHHHHHHC--CCCceEEEEEC-CCCCHHHHHHHHh---h--c
Confidence 222 567778888631 356788999999 88667777776 6666666654444 3 4
Q ss_pred CeEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHHHHHH
Q 013195 377 PQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415 (448)
Q Consensus 377 ~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~~ 415 (448)
|.+ ..++..||..-..+- ....+|.++++++..
T Consensus 142 D~V--LiMtV~PGfgGQ~f~----~~~l~KI~~lr~~~~ 174 (228)
T PRK08091 142 DLI--QILTLDPRTGTKAPS----DLILDRVIQVENRLG 174 (228)
T ss_pred CEE--EEEEECCCCCCcccc----HHHHHHHHHHHHHHH
Confidence 544 456677776543322 224455555655554
No 300
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=38.86 E-value=1e+02 Score=31.62 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeC
Q 013195 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387 (448)
Q Consensus 327 ~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~ 387 (448)
+..+.|.+.+..+++.+|++.+-+.++- +.+.+++.+.++.+++.+.|.+-++..+|.
T Consensus 95 ~g~~~~l~~i~~~k~~~~~~pvIaSi~~---~~s~~~~~~~a~~~e~~GaD~iELNiSCPn 152 (385)
T PLN02495 95 RPFETMLAEFKQLKEEYPDRILIASIME---EYNKDAWEEIIERVEETGVDALEINFSCPH 152 (385)
T ss_pred cCHHHHHHHHHHHHhhCCCCcEEEEccC---CCCHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 4678888888888777777666666552 258999999999999998999999888886
No 301
>TIGR03555 F420_mer 5,10-methylenetetrahydromethanopterin reductase. Members of this protein family are 5,10-methylenetetrahydromethanopterin reductase, an F420-dependent enzyme of methanogenesis. It is restricted to the Archaea.
Probab=38.81 E-value=3.4e+02 Score=26.82 Aligned_cols=105 Identities=14% Similarity=0.295 Sum_probs=62.2
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeec-------CCcChhHHHH
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-------NPPFILEHLK 293 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~-------~p~~i~~~l~ 293 (448)
.+.+++++.++..-+.|+..+|+.+ ..+.+ +...++-.+.... .++++++. +|-.+.+...
T Consensus 9 ~~~~~~~~~a~~AE~~Gfd~~w~~e-h~~~~------~~~~~la~~a~~T-----~ri~lgt~v~~~~~r~P~~~A~~~a 76 (325)
T TIGR03555 9 DPITKIAYYVKLAEDNGFEYAWITD-HYNNR------NVYSTLTLLALNT-----NTIKLGPGVTNPYTRSPAITASAIA 76 (325)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecc-ccCcc------CHHHHHHHHHHhc-----CeeEEeeeeccCCCCCHHHHHHHHH
Confidence 4688889999888888999999865 33222 2345666676544 35566542 2222222222
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhcCCCC--CHHHHHHHHHHHHHh
Q 013195 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY--TLSDFRTVVDTLIEL 342 (448)
Q Consensus 294 el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~--t~e~~~~~i~~ir~~ 342 (448)
.|. .+..+ ++.+|+=+|+......++... ..+.+.+.++.+++.
T Consensus 77 tLd-~ls~G----R~~lGlg~G~~~~~~~~G~~~~~~~~~~~E~v~iir~l 122 (325)
T TIGR03555 77 TLD-EISGG----RAVLGIGPGDKATFDAMGIEWVKPLTTIREAIEVIRQL 122 (325)
T ss_pred HHH-HHcCC----CEEEEecCCcHHHHHHcCCCcCchHHHHHHHHHHHHHH
Confidence 222 22222 667788788877777776542 355666666666664
No 302
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=38.62 E-value=4.7e+02 Score=27.08 Aligned_cols=146 Identities=13% Similarity=0.075 Sum_probs=86.5
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (448)
-.+.++++-++-++.|-+.|+..|.......+. .-.+.++.+.... +. ................+.+
T Consensus 18 g~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~-------~~~~~~~~i~~~~---~~---~~~~~~~~~~~~~~~~~ea 84 (409)
T COG0119 18 GVSFSVEEKIRIAKALDDLGVDYIEAGFPVASP-------GDFEFVRAIAEKA---GL---FICALIAALARAIKRDIEA 84 (409)
T ss_pred CCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCCh-------hhHHHHHHHHHhc---Cc---ccchhhhhhHHhHHhhHHH
Confidence 467889999999999999999999875432221 1256666666322 22 1111111111111123444
Q ss_pred HHhCCCcccccccccCCCCHHHHHhcCC--CCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 013195 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNR--EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (448)
Q Consensus 298 l~~~~~~~~~l~iglES~s~~vLk~m~R--~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (448)
+...+ ...+|+=+-+.+-.+-..++. ....+.+.+.++.++++ |+.+..+..-.+ .-+.+.+.+.++.+...+
T Consensus 85 ~~~a~--~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~--g~~~~~~~Ed~~-rt~~~~l~~~~~~~~~~g 159 (409)
T COG0119 85 LLEAG--VDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDH--GLEVRFSAEDAT-RTDPEFLAEVVKAAIEAG 159 (409)
T ss_pred HHhCC--CCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEeeccc-cCCHHHHHHHHHHHHHcC
Confidence 55443 345665443333333344443 34667788889999999 888887776666 556677777777777777
Q ss_pred CCeEEE
Q 013195 376 FPQVHI 381 (448)
Q Consensus 376 ~~~v~i 381 (448)
.+.+++
T Consensus 160 a~~i~l 165 (409)
T COG0119 160 ADRINL 165 (409)
T ss_pred CcEEEE
Confidence 666654
No 303
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=38.28 E-value=1.8e+02 Score=29.45 Aligned_cols=82 Identities=9% Similarity=0.120 Sum_probs=54.4
Q ss_pred HHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 013195 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 295 l~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l 374 (448)
+..+...+ ...+.+|.+-.+ ++.-...++.+++.+.++.++++ |..+...+=.=+-.+..+.+.+.++.+.++
T Consensus 19 l~~ai~~G--ADaVY~G~~~~~---~R~~a~nfs~~~l~e~i~~ah~~--gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~ 91 (347)
T COG0826 19 LKAAIAAG--ADAVYIGEKEFG---LRRRALNFSVEDLAEAVELAHSA--GKKVYVAVNTLLHNDELETLERYLDRLVEL 91 (347)
T ss_pred HHHHHHcC--CCEEEeCCcccc---cccccccCCHHHHHHHHHHHHHc--CCeEEEEeccccccchhhHHHHHHHHHHHc
Confidence 44444433 467889987333 22222458999999999999999 763332221112244556689999999999
Q ss_pred CCCeEEEEe
Q 013195 375 KFPQVHISQ 383 (448)
Q Consensus 375 ~~~~v~i~~ 383 (448)
++|.+-+.-
T Consensus 92 GvDaviv~D 100 (347)
T COG0826 92 GVDAVIVAD 100 (347)
T ss_pred CCCEEEEcC
Confidence 999877754
No 304
>PRK02271 methylenetetrahydromethanopterin reductase; Provisional
Probab=38.04 E-value=3.9e+02 Score=26.38 Aligned_cols=104 Identities=15% Similarity=0.322 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeec-------CCcChhHHHHH
Q 013195 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-------NPPFILEHLKE 294 (448)
Q Consensus 222 ~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~-------~p~~i~~~l~e 294 (448)
+++++++.++..-+.|+..+|+.+ ..+.. +-.-++-.+.... .++++++. +|-.+......
T Consensus 12 ~~~~~~~~a~~AE~~Gfd~vw~~e-h~~~~------~~~~~la~~aa~T-----~rI~lgt~v~~~~~r~P~~~A~~~at 79 (325)
T PRK02271 12 PVKKIAYLAKLAEDNGFDYAWITD-HYNNR------DVYMTLAAIAAAT-----DTIKLGPGVTNPYTRHPAITASAIAT 79 (325)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecc-ccCCC------CHHHHHHHHHHhc-----CeEEEEeeeccCCCCCHHHHHHHHHH
Confidence 688999999888888999998865 33221 2356666776544 35666541 22222222211
Q ss_pred HHHHHhCCCcccccccccCCCCHHHHHhcCCCC--CHHHHHHHHHHHHHh
Q 013195 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY--TLSDFRTVVDTLIEL 342 (448)
Q Consensus 295 l~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~--t~e~~~~~i~~ir~~ 342 (448)
| +.+..+ ++.+|+=+|++..+..++..+ ....+.+.++.+++.
T Consensus 80 L-d~ls~G----R~~lG~G~G~~~~~~~~G~~~~~~~~~~~E~l~ilr~l 124 (325)
T PRK02271 80 L-DEISGG----RAVLGIGPGDKATLDALGIEWEKPLRTVKEAIEVIRKL 124 (325)
T ss_pred H-HHHcCC----CEEEEecCCCHHHHHHcCCCcccHHHHHHHHHHHHHHH
Confidence 2 122222 667888888887788787653 356667777777765
No 305
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=37.93 E-value=51 Score=33.91 Aligned_cols=74 Identities=16% Similarity=0.340 Sum_probs=49.8
Q ss_pred CCCceEEEEecCCcc-ChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccc
Q 013195 56 PGTETIYMKTFGCSH-NQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCV 134 (448)
Q Consensus 56 ~~~~~~~~~t~GC~~-N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~ 134 (448)
+...++-++.+||++ ...+-..++..|+..+. ....++|+..+=.+...+.+ .-+++++.+.|.+|+..-|+
T Consensus 285 ~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~~-----~~~~~~~i~t~~~v~~~a~~--~G~~~~le~~G~~iv~dTC~ 357 (400)
T PF04412_consen 285 AGDEKVDLVALGCPHLSLEELREIAELLEGRKV-----HPNVPLWITTSRAVYELAER--MGYVERLEKAGVQIVTDTCM 357 (400)
T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHhCCCC-----CCCceEEEECCHHHHHHHHh--CCHHHHHHHcCCEEEccccc
Confidence 345678899999998 55667778888876651 23456777744444332211 12677788889999998997
Q ss_pred cc
Q 013195 135 PQ 136 (448)
Q Consensus 135 a~ 136 (448)
..
T Consensus 358 ~v 359 (400)
T PF04412_consen 358 VV 359 (400)
T ss_pred ee
Confidence 64
No 306
>smart00876 BATS Biotin and Thiamin Synthesis associated domain. Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation.
Probab=37.76 E-value=35 Score=27.31 Aligned_cols=27 Identities=22% Similarity=0.296 Sum_probs=19.9
Q ss_pred EEeceeCCCCcccCC-CCCCHHHHHHHH
Q 013195 381 ISQFYPRPGTPAARM-KKVPSAVVKKRS 407 (448)
Q Consensus 381 i~~~~p~pGT~~~~~-~~v~~~~~~~R~ 407 (448)
+..|.|.||||+.+. +.++.++..+-.
T Consensus 2 in~l~P~~gTp~~~~~~~~~~~~~l~~i 29 (94)
T smart00876 2 INRLRPIEGTPLEDPPPPVSPEEFLRTI 29 (94)
T ss_pred CCccccCCCCCcccCCCCCCHHHHHHHH
Confidence 457899999999887 567776554443
No 307
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=37.68 E-value=42 Score=26.75 Aligned_cols=28 Identities=21% Similarity=0.282 Sum_probs=13.4
Q ss_pred EEeceeCCCCcccCCCCCCHHHHHHHHH
Q 013195 381 ISQFYPRPGTPAARMKKVPSAVVKKRSR 408 (448)
Q Consensus 381 i~~~~p~pGT~~~~~~~v~~~~~~~R~~ 408 (448)
++.|.|.+|||+.+.+.+++++..+-..
T Consensus 2 in~l~P~~Gtpl~~~~~l~~~e~lr~ia 29 (93)
T PF06968_consen 2 INFLRPIPGTPLEDPPPLSDEEFLRIIA 29 (93)
T ss_dssp EEE----TTSTTTTS----HHHHHHHHH
T ss_pred eeeEEeCCCCCCCCCCCCCHHHHHHHHH
Confidence 3449999999997777787766554443
No 308
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=37.55 E-value=29 Score=32.81 Aligned_cols=43 Identities=19% Similarity=0.376 Sum_probs=31.8
Q ss_pred CceEEEE---ecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEE
Q 013195 58 TETIYMK---TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101 (448)
Q Consensus 58 ~~~~~~~---t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~i 101 (448)
.++||+. |-++.++..+ ..+...|...||.++++|++|-.|+=
T Consensus 50 ~ktVyv~vrNTSd~~~~~l~-~~i~~~L~~kGY~iv~~P~~A~Y~lQ 95 (243)
T PRK13731 50 ERTVFLQIKNTSDKDMSGLQ-GKIADAVKAKGYQVVTSPDKAYYWIQ 95 (243)
T ss_pred CceEEEEEeeCCCcchHHHH-HHHHHHHHhCCeEEecChhhceeeee
Confidence 5677774 5565555333 34678899999999999999988864
No 309
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=37.48 E-value=2.8e+02 Score=26.22 Aligned_cols=152 Identities=10% Similarity=0.179 Sum_probs=82.1
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEEE--EecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHH
Q 013195 220 SYTVESLVGRVRTVIADGVKEVWL--SSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~~--~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (448)
+-+.-.+-+|++.+.+ |+..+.+ .|..+-. ....+ ...++.+.+... ....+.+...+|... ++.+.
T Consensus 11 ~ad~~~l~~el~~l~~-g~d~lH~DiMDG~FVP-N~tfg---~~~i~~ir~~t~--~~~DvHLMv~~P~~~---i~~~~- 79 (229)
T PRK09722 11 CMDLLKFKEQIEFLNS-KADYFHIDIMDGHFVP-NLTLS---PFFVSQVKKLAS--KPLDVHLMVTDPQDY---IDQLA- 79 (229)
T ss_pred hcCHHHHHHHHHHHHh-CCCEEEEecccCccCC-CcccC---HHHHHHHHhcCC--CCeEEEEEecCHHHH---HHHHH-
Confidence 4456678889988876 8777654 3332211 00112 467777765422 234566665577532 22222
Q ss_pred HHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCC
Q 013195 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (448)
Q Consensus 298 l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~ 377 (448)
+. + +..+.+-.|+..+ ...++++.+|+. |+.. .+-+. |+-..+.++..+ .. +|
T Consensus 80 --~a-G-ad~it~H~Ea~~~-------------~~~~~i~~Ik~~--G~ka--Glaln-P~T~~~~l~~~l---~~--vD 132 (229)
T PRK09722 80 --DA-G-ADFITLHPETING-------------QAFRLIDEIRRA--GMKV--GLVLN-PETPVESIKYYI---HL--LD 132 (229)
T ss_pred --Hc-C-CCEEEECccCCcc-------------hHHHHHHHHHHc--CCCE--EEEeC-CCCCHHHHHHHH---Hh--cC
Confidence 22 2 5677787886432 245688889998 7654 44444 665555555444 33 35
Q ss_pred eEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHHHHHH
Q 013195 378 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415 (448)
Q Consensus 378 ~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~~ 415 (448)
.+ ..++..||-.-..+- ....++.++++++..
T Consensus 133 ~V--LvMsV~PGf~GQ~fi----~~~l~KI~~lr~~~~ 164 (229)
T PRK09722 133 KI--TVMTVDPGFAGQPFI----PEMLDKIAELKALRE 164 (229)
T ss_pred EE--EEEEEcCCCcchhcc----HHHHHHHHHHHHHHH
Confidence 44 456667786544332 223344445555443
No 310
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=37.21 E-value=1.2e+02 Score=27.15 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecee
Q 013195 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386 (448)
Q Consensus 328 t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p 386 (448)
+.+...++.+.+++.+||+.+... --|+ -..++-.+.++.+.+.++|.+.+..=+|
T Consensus 55 ~~~~~~~~~~~l~~~yp~l~i~g~-~~g~--~~~~~~~~i~~~I~~~~pdiv~vglG~P 110 (171)
T cd06533 55 KPEVLEKAAERLRARYPGLKIVGY-HHGY--FGPEEEEEIIERINASGADILFVGLGAP 110 (171)
T ss_pred CHHHHHHHHHHHHHHCCCcEEEEe-cCCC--CChhhHHHHHHHHHHcCCCEEEEECCCC
Confidence 345566777889999999887542 2222 2234444588999999999887765333
No 311
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=37.20 E-value=2.5e+02 Score=26.37 Aligned_cols=137 Identities=13% Similarity=0.173 Sum_probs=78.7
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEE--EecCCCCCCCCCCCCHHHHHHHHHHh-CCCCCcceEEEeecCCcChhHHHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWL--SSEDTGAYGRDIGVNLPILLNAIVAE-LPPDGSTMLRIGMTNPPFILEHLKEI 295 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~--~~~~~~~yg~d~~~~l~~ll~~l~~~-~~~~~~~~iri~~~~p~~i~~~l~el 295 (448)
-+.+.-.+-+|++.+.+.|+..+.+ .|.++-. ....+ .+.++.+.+. .. -...+.+...+|... ++.+
T Consensus 11 l~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVP-N~tfg---~~~i~~lr~~~~~--~~~dvHLMv~~P~~~---i~~~ 81 (223)
T PRK08745 11 LSADFARLGEEVDNVLKAGADWVHFDVMDNHYVP-NLTIG---PMVCQALRKHGIT--APIDVHLMVEPVDRI---VPDF 81 (223)
T ss_pred hhcCHHHHHHHHHHHHHcCCCEEEEecccCccCC-CcccC---HHHHHHHHhhCCC--CCEEEEeccCCHHHH---HHHH
Confidence 3456678889999999999887664 3433211 01112 4677777654 22 224556654566432 2222
Q ss_pred HHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 013195 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (448)
Q Consensus 296 ~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (448)
. +. + +..+.+-.|+. ....++++.+|+. |+.. .+.+. |+-..+.++..++ .
T Consensus 82 ~---~~-g-ad~I~~H~Ea~--------------~~~~~~l~~Ir~~--g~k~--Glaln-P~T~~~~i~~~l~---~-- 132 (223)
T PRK08745 82 A---DA-G-ATTISFHPEAS--------------RHVHRTIQLIKSH--GCQA--GLVLN-PATPVDILDWVLP---E-- 132 (223)
T ss_pred H---Hh-C-CCEEEEcccCc--------------ccHHHHHHHHHHC--CCce--eEEeC-CCCCHHHHHHHHh---h--
Confidence 2 22 2 46777778863 1356788999999 7654 44443 6656666654443 3
Q ss_pred CCeEEEEeceeCCCCcccCC
Q 013195 376 FPQVHISQFYPRPGTPAARM 395 (448)
Q Consensus 376 ~~~v~i~~~~p~pGT~~~~~ 395 (448)
+|. +..++..||..-.++
T Consensus 133 vD~--VlvMtV~PGf~GQ~f 150 (223)
T PRK08745 133 LDL--VLVMSVNPGFGGQAF 150 (223)
T ss_pred cCE--EEEEEECCCCCCccc
Confidence 343 456677888765443
No 312
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=36.71 E-value=3.7e+02 Score=25.34 Aligned_cols=130 Identities=14% Similarity=0.172 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCc
Q 013195 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (448)
Q Consensus 225 ~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~ 304 (448)
+-++-++.+.+.|+++++++|-|. ..|.. .+ .++++++.+... ..+.++- --. .++++..++..+
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~-~~g~~--~n-~~~i~~i~~~~~----~pv~vgG-Gir----s~edv~~~l~~G-- 97 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDA-AFGRG--SN-RELLAEVVGKLD----VKVELSG-GIR----DDESLEAALATG-- 97 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccc-cCCCC--cc-HHHHHHHHHHcC----CCEEEcC-CCC----CHHHHHHHHHCC--
Confidence 445566677789999999999774 33432 33 489999987642 2333331 111 113344455432
Q ss_pred ccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEE---E---EeCCCCCHHHHHHHHHHHHhcCCCe
Q 013195 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI---I---CGFPGETDEDFNQTVNLIKEYKFPQ 378 (448)
Q Consensus 305 ~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~---I---vG~PgET~ed~~~tl~~i~~l~~~~ 378 (448)
+..+.+|-.... +++-+.++++.+.+. +.++.|+ - -|+- ++..+..+.++.+.+.+.+.
T Consensus 98 a~kvviGs~~l~-----------~p~l~~~i~~~~~~~---i~vsld~~~~~v~~~Gw~-~~~~~~~~~~~~l~~~G~~~ 162 (241)
T PRK14024 98 CARVNIGTAALE-----------NPEWCARVIAEHGDR---VAVGLDVRGHTLAARGWT-RDGGDLWEVLERLDSAGCSR 162 (241)
T ss_pred CCEEEECchHhC-----------CHHHHHHHHHHhhhh---EEEEEEEeccEeccCCee-ecCccHHHHHHHHHhcCCCE
Confidence 456656643322 233444444444332 4444444 1 2331 24445556666677778877
Q ss_pred EEEEec
Q 013195 379 VHISQF 384 (448)
Q Consensus 379 v~i~~~ 384 (448)
+-++.-
T Consensus 163 iiv~~~ 168 (241)
T PRK14024 163 YVVTDV 168 (241)
T ss_pred EEEEee
Confidence 666544
No 313
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=36.56 E-value=3e+02 Score=29.32 Aligned_cols=127 Identities=13% Similarity=0.104 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhC-C
Q 013195 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-P 302 (448)
Q Consensus 224 e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~-~ 302 (448)
+.+++.++.+.+.|+.-|-+.++.+ .+....+..+++.+.+.. ...+.+.+.+|..+ .+.++. .
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st----~p~~~~v~~~V~~l~~~~----~~pISIDT~~~~v~-------eaAL~aGA 229 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSF----DDDPDVVKEKVKTALDAL----DSPVIADTPTLDEL-------YEALKAGA 229 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcC----CCcHHHHHHHHHHHHhhC----CCcEEEeCCCHHHH-------HHHHHcCC
Confidence 8899999999999988777644322 111123566667766532 35677877666422 222222 1
Q ss_pred CcccccccccCCCCHHHHHhcC------------CCCCHHHHHHHHHHHHHhCCCC-EEEEEEEEeCCCCCHHHHHHHHH
Q 013195 303 CVYSFLHVPVQSGSDAVLSAMN------------REYTLSDFRTVVDTLIELVPGM-QIATDIICGFPGETDEDFNQTVN 369 (448)
Q Consensus 303 ~~~~~l~iglES~s~~vLk~m~------------R~~t~e~~~~~i~~ir~~~pgi-~i~~~~IvG~PgET~ed~~~tl~ 369 (448)
.+.+.++-+ . .++++..+. ...+.+.+.+.++.++++ |+ .+..|=++|+++ -.+.++++
T Consensus 230 diINsVs~~--~-~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~--Gi~~IIlDPglg~~~---~~l~~sL~ 301 (499)
T TIGR00284 230 SGVIMPDVE--N-AVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTS--GYSKVAADPSLSPPL---LGLLESII 301 (499)
T ss_pred CEEEECCcc--c-hhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHC--CCCcEEEeCCCCcch---HHHHHHHH
Confidence 122222111 1 122221111 122347788899999999 98 788899999753 23666666
Q ss_pred HHHh
Q 013195 370 LIKE 373 (448)
Q Consensus 370 ~i~~ 373 (448)
.++.
T Consensus 302 ~l~~ 305 (499)
T TIGR00284 302 RFRR 305 (499)
T ss_pred HHHH
Confidence 5553
No 314
>PRK06703 flavodoxin; Provisional
Probab=36.52 E-value=93 Score=26.83 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=32.6
Q ss_pred HHHHHHHHhCCCeeec---------CCCCCcEEEEeecccccc-hHHHHHHHHHHHh---cCCCCEEEEcccccc
Q 013195 76 EYMAGQLSAFGYALTD---------NSEEADIWLINTCTVKSP-SQSAMDTLIAKCK---SAKKPLVVAGCVPQG 137 (448)
Q Consensus 76 e~~~~~L~~~G~~~~~---------~~~~aDvv~intctv~~~-a~~~~~~~i~~~~---~~~~~vVvgGc~a~~ 137 (448)
+.|+..|...|+++.. +..++|+|+|-|.|.-.. ....+...+..++ -+++++.+=|+..+.
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~ 94 (151)
T PRK06703 20 DLIKVSLDAFDHEVVLQEMDGMDAEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTA 94 (151)
T ss_pred HHHHHHHHhcCCceEEEehhhCCHHHHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCC
Confidence 4455667777876531 234679999966555321 1122344444433 234566666665443
No 315
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=36.42 E-value=1.3e+02 Score=29.04 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhcCCCeE
Q 013195 361 DEDFNQTVNLIKEYKFPQV 379 (448)
Q Consensus 361 ~ed~~~tl~~i~~l~~~~v 379 (448)
.++.++..+.+++++++.+
T Consensus 128 ~ee~~~~~~~~~~~gl~~I 146 (258)
T PRK13111 128 PEEAEELRAAAKKHGLDLI 146 (258)
T ss_pred HHHHHHHHHHHHHcCCcEE
Confidence 3555566666666666554
No 316
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=36.25 E-value=4.2e+02 Score=25.89 Aligned_cols=120 Identities=15% Similarity=0.219 Sum_probs=71.5
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC-CCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~-~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~ 296 (448)
.+-.+.+.+++|++.....|.+.++|. .++|..... .-+..+.+.|.+.+.. ....+.+.+
T Consensus 81 ~~ekS~~~l~~e~~r~~~lG~~~lv~H---pG~~~~~~~e~~l~~i~~~Ln~~~~~-~~v~i~~e~-------------- 142 (280)
T COG0648 81 KVEKSIERLIDEIDRCEQLGAKLLVFH---PGSYLGQGKEEGLNRIAEALNELLEE-EGVIILLEN-------------- 142 (280)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEC---CccccCCCHHHHHHHHHHHHHHHhhc-cCCeEEEEE--------------
Confidence 467789999999999999999999984 466655321 1222333333222210 001111111
Q ss_pred HHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC-CEEEEEE----EEeCCCCCHHHHHHHHHHH
Q 013195 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG-MQIATDI----ICGFPGETDEDFNQTVNLI 371 (448)
Q Consensus 297 ~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pg-i~i~~~~----IvG~PgET~ed~~~tl~~i 371 (448)
++.| -++++.+.+++.++++.+.+. . +.++.|+ =.|+.--|+++|+++++.+
T Consensus 143 -------------~age--------gs~~g~~F~~L~eii~~~~~~--~~igvCiDtcH~~Aagy~~~~~~~~~~vl~~~ 199 (280)
T COG0648 143 -------------TAGE--------GSGKGTQFGELAEIIDLIEEK--ERIGVCIDTCHAFAAGYDIITEEDFEKVLNEF 199 (280)
T ss_pred -------------eccc--------cCccccchhhHHHHHHhhccc--CceEEEEEchhhhhccCCcCcHHHHHHHHHHH
Confidence 1111 345677788888888888876 4 5555554 3455556668899999776
Q ss_pred Hhc-CCCe
Q 013195 372 KEY-KFPQ 378 (448)
Q Consensus 372 ~~l-~~~~ 378 (448)
.+. ++++
T Consensus 200 d~~~G~~~ 207 (280)
T COG0648 200 DKVLGLEY 207 (280)
T ss_pred HHHhChhh
Confidence 544 5543
No 317
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=36.11 E-value=3.1e+02 Score=26.05 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCCCCCHHHHHHH
Q 013195 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406 (448)
Q Consensus 327 ~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R 406 (448)
.+.+++...++.+.... .+.+..|+=-|| |.+...+.+|++.+.+.+..-+++--- .-|. ..-+-+|.++..+|
T Consensus 52 lt~~e~~~~~~~I~~~~-~iPv~vD~d~Gy-G~~~~~v~~tv~~~~~aG~agi~IEDq--~~~~--~~~~l~~~ee~~~k 125 (238)
T PF13714_consen 52 LTLTEMLAAVRRIARAV-SIPVIVDADTGY-GNDPENVARTVRELERAGAAGINIEDQ--RCGH--GGKQLVSPEEMVAK 125 (238)
T ss_dssp S-HHHHHHHHHHHHHHS-SSEEEEE-TTTS-SSSHHHHHHHHHHHHHCT-SEEEEESB--STTT--STT-B--HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhh-cCcEEEEccccc-CchhHHHHHHHHHHHHcCCcEEEeecc--ccCC--CCCceeCHHHHHHH
Confidence 58899999999999874 689999999999 889999999999999999988888655 3331 11123577888888
Q ss_pred HHHHHHHHH
Q 013195 407 SRELTSVFE 415 (448)
Q Consensus 407 ~~~l~~~~~ 415 (448)
.+...+...
T Consensus 126 I~Aa~~a~~ 134 (238)
T PF13714_consen 126 IRAAVDARR 134 (238)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcc
Confidence 776666554
No 318
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=36.07 E-value=1.4e+02 Score=26.46 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=41.0
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEe-----eccccc--chHHHHHHHHHHHhc--CCCCEEE
Q 013195 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN-----TCTVKS--PSQSAMDTLIAKCKS--AKKPLVV 130 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~in-----tctv~~--~a~~~~~~~i~~~~~--~~~~vVv 130 (448)
.+.+..+|+.=. .+..+...|.. . ....+|+|+|+ .+.... ...+.+.++++++++ ++++|++
T Consensus 40 ~~~~~n~g~~G~--t~~~~~~~l~~----~--~~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv 111 (191)
T cd01836 40 GVRWRLFAKTGA--TSADLLRQLAP----L--PETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVV 111 (191)
T ss_pred ceEEEEEecCCc--CHHHHHHHHHh----c--ccCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 356677776444 45566677765 1 23578999983 222221 123566777888877 6778888
Q ss_pred Eccc
Q 013195 131 AGCV 134 (448)
Q Consensus 131 gGc~ 134 (448)
.+..
T Consensus 112 ~~~p 115 (191)
T cd01836 112 TAVP 115 (191)
T ss_pred ECCC
Confidence 7753
No 319
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=35.18 E-value=1.2e+02 Score=28.90 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEE
Q 013195 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381 (448)
Q Consensus 327 ~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i 381 (448)
.+.+++...++.+++..+...+.+|+=.|+ |++.++..+++.-+.+.+.+-+++
T Consensus 55 vtl~em~~~~~~I~r~~~~~pviaD~~~G~-g~~~~~~~~~~~~l~~aGa~gv~i 108 (240)
T cd06556 55 YPVNDVPYHVRAVRRGAPLALIVADLPFGA-YGAPTAAFELAKTFMRAGAAGVKI 108 (240)
T ss_pred cCHHHHHHHHHHHHhhCCCCCEEEeCCCCC-CcCHHHHHHHHHHHHHcCCcEEEE
Confidence 578889999999888766677888888888 557677777777666687766665
No 320
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=34.67 E-value=4.5e+02 Score=25.69 Aligned_cols=143 Identities=13% Similarity=0.043 Sum_probs=76.5
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (448)
-.+.+.++=++-++.|.+.|+++|.+. +...+.. -.+.+++|.+........ ++..+.+.. ...++...+
T Consensus 17 g~~~s~~~Ki~ia~~L~~~Gv~~IE~g---fP~~~~~----e~e~~~~i~~~~~~~~~~--~~~al~r~~-~~die~a~~ 86 (284)
T cd07942 17 AEPMSVEQKLRFFKLLVKIGFKEIEVG---FPSASQT----DFDFVRELIEEDLIPDDV--TIQVLTQAR-EDLIERTFE 86 (284)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEe---CCCCCHH----HHHHHHHHHHccCCCCCC--EEEEEcCCC-hhhHHHHHH
Confidence 457889999999999999999999874 3444322 247777775431000112 222222221 111221221
Q ss_pred HHhCCCcccccccccCCCCHHHH-HhcCCC--CCHHHHHHHHHHHHHhCCCC-EEEEEEEEeCCCC----C-HHHHHHHH
Q 013195 298 VLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGM-QIATDIICGFPGE----T-DEDFNQTV 368 (448)
Q Consensus 298 l~~~~~~~~~l~iglES~s~~vL-k~m~R~--~t~e~~~~~i~~ir~~~pgi-~i~~~~IvG~PgE----T-~ed~~~tl 368 (448)
...... ...+++-+ |.|+.-+ +.+|+. ...+.+.++++.+++. |+ .+++.|.+-|-+| + .+.+.+.+
T Consensus 87 ~~~~~~-~~~v~i~~-~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~--g~~~~~~~~~~~~~~EDasr~~~~~l~~~~ 162 (284)
T cd07942 87 ALRGAK-KAIVHLYN-ATSPLQRRVVFGKSKEEIIEIAVDGAKLVKEL--AAKYPETDWRFEYSPESFSDTELDFALEVC 162 (284)
T ss_pred HhCCCC-CCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--cccccCceEEEEECCccCCCCCHHHHHHHH
Confidence 111110 12466655 4555544 566665 3566677888888888 65 3445555655553 3 34444455
Q ss_pred HHHHhc
Q 013195 369 NLIKEY 374 (448)
Q Consensus 369 ~~i~~l 374 (448)
+.+.+.
T Consensus 163 ~~~~~~ 168 (284)
T cd07942 163 EAVIDV 168 (284)
T ss_pred HHHHHh
Confidence 555444
No 321
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=34.53 E-value=3.5e+02 Score=24.39 Aligned_cols=119 Identities=16% Similarity=0.199 Sum_probs=69.1
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (448)
.|..++++.++-++.+.+.|++-+.+.-.+. .-.+.++.+.+..+ ...+-.+++.. .+.++...
T Consensus 10 ~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~---------~~~~~i~~l~~~~~---~~~iGag~v~~---~~~~~~a~- 73 (190)
T cd00452 10 LRGDDAEDALALAEALIEGGIRAIEITLRTP---------GALEAIRALRKEFP---EALIGAGTVLT---PEQADAAI- 73 (190)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHHHCC---CCEEEEEeCCC---HHHHHHHH-
Confidence 4556799999999999999999988864211 23568888877653 22333333321 22222222
Q ss_pred HHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCC
Q 013195 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (448)
Q Consensus 298 l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~ 377 (448)
..+ ..++|.|- + + .+.++..++. ++ .+|+|.- |.++..+. .+.+.|
T Consensus 74 --~~G--a~~i~~p~-~-~----------------~~~~~~~~~~--~~----~~i~gv~--t~~e~~~A----~~~Gad 119 (190)
T cd00452 74 --AAG--AQFIVSPG-L-D----------------PEVVKAANRA--GI----PLLPGVA--TPTEIMQA----LELGAD 119 (190)
T ss_pred --HcC--CCEEEcCC-C-C----------------HHHHHHHHHc--CC----cEECCcC--CHHHHHHH----HHCCCC
Confidence 221 45676552 1 1 2345555555 44 4566764 66665544 357889
Q ss_pred eEEEEecee
Q 013195 378 QVHISQFYP 386 (448)
Q Consensus 378 ~v~i~~~~p 386 (448)
++.+|+..+
T Consensus 120 ~i~~~p~~~ 128 (190)
T cd00452 120 IVKLFPAEA 128 (190)
T ss_pred EEEEcCCcc
Confidence 988865443
No 322
>COG1647 Esterase/lipase [General function prediction only]
Probab=34.22 E-value=3.1e+02 Score=25.99 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcCh---hHHHHHHHHHH
Q 013195 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI---LEHLKEIAEVL 299 (448)
Q Consensus 223 ~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i---~~~l~el~~l~ 299 (448)
.+++.+.-+.|.+.|+.+|..+|-.. |. +..|. |...++ ...+-. +..|... .-.++-+....
T Consensus 69 ~~~v~d~Y~~L~~~gy~eI~v~GlSm---GG-----v~alk--la~~~p---~K~iv~-m~a~~~~k~~~~iie~~l~y~ 134 (243)
T COG1647 69 WEDVEDGYRDLKEAGYDEIAVVGLSM---GG-----VFALK--LAYHYP---PKKIVP-MCAPVNVKSWRIIIEGLLEYF 134 (243)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeecc---hh-----HHHHH--HHhhCC---ccceee-ecCCcccccchhhhHHHHHHH
Confidence 35666667778889999999998432 32 12222 233343 122222 1222221 11122223322
Q ss_pred hCCCcccccccccCCCCHHHHH----hcCC--CCCHHHHHHHHHHHHHhCCCCEEEEEEEEeC
Q 013195 300 RHPCVYSFLHVPVQSGSDAVLS----AMNR--EYTLSDFRTVVDTLIELVPGMQIATDIICGF 356 (448)
Q Consensus 300 ~~~~~~~~l~iglES~s~~vLk----~m~R--~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~ 356 (448)
+..+ . +|--+++..+ ..+. ..+..++.+.++.++..+.-|.+-+.++.|=
T Consensus 135 ~~~k---k----~e~k~~e~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~ 190 (243)
T COG1647 135 RNAK---K----YEGKDQEQIDKEMKSYKDTPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGR 190 (243)
T ss_pred HHhh---h----ccCCCHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhcccchhheecc
Confidence 2211 1 2233334343 3332 1356778888888888766677766666663
No 323
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=33.98 E-value=1.7e+02 Score=27.82 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=44.0
Q ss_pred EecCCccChhHHHHHHHHHHhCCCeeec------------CCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-E
Q 013195 64 KTFGCSHNQSDSEYMAGQLSAFGYALTD------------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (448)
Q Consensus 64 ~t~GC~~N~~dse~~~~~L~~~G~~~~~------------~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vV-v 130 (448)
.-+||-.+..=.+++...|...|..+.. ...+-|++++- |....+ +.+.+.++.+|++|.+|| +
T Consensus 4 ~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~i--S~sG~t-~~~~~~~~~a~~~g~~ii~i 80 (268)
T TIGR00393 4 VIVGIGKSGLIGKKIVATFASTGTPSFFLHPTEAMHGDLGMVEPNDVVLMI--SYSGES-LELLNLIPHLKRLSHKIIAF 80 (268)
T ss_pred EEEecChHHHHHHHHHHHHHhcCCceEEeCHhHHhhcccCCCCCCCEEEEE--eCCCCC-HHHHHHHHHHHHcCCcEEEE
Confidence 3456667777788888888888876531 23445777773 333333 356788899999998765 6
Q ss_pred Ecc
Q 013195 131 AGC 133 (448)
Q Consensus 131 gGc 133 (448)
++-
T Consensus 81 T~~ 83 (268)
T TIGR00393 81 TGS 83 (268)
T ss_pred ECC
Confidence 654
No 324
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=33.68 E-value=6e+02 Score=26.86 Aligned_cols=142 Identities=13% Similarity=0.100 Sum_probs=72.3
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCC--CCCCCCCCHHHHHHHHHHhCCCCCcceEE-----Eeec-CCcChhHHH
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGA--YGRDIGVNLPILLNAIVAELPPDGSTMLR-----IGMT-NPPFILEHL 292 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~--yg~d~~~~l~~ll~~l~~~~~~~~~~~ir-----i~~~-~p~~i~~~l 292 (448)
...++++.-+..+.+.|+..|.+.|.-++. ++. ...+=.+.|+.+.+.++......+. ++|. .|+++.+.
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rf-l~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~- 109 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRF-LNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDK- 109 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcc-cCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHH-
Confidence 456777777777777798888887754333 211 1233467778887776521111111 2222 23444333
Q ss_pred HHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEE-EeCCCCCHHHHHHHHHHH
Q 013195 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII-CGFPGETDEDFNQTVNLI 371 (448)
Q Consensus 293 ~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~I-vG~PgET~ed~~~tl~~i 371 (448)
+.+.+...+ ...+.+ +. .+| ..+.....++.+++. |..+...+. -+-|..|.+-+.+.++.+
T Consensus 110 --fv~~a~~~G-idi~Ri-fd--------~ln---d~~n~~~ai~~ak~~--G~~~~~~i~yt~sp~~t~~y~~~~a~~l 172 (468)
T PRK12581 110 --FISLSAQNG-IDVFRI-FD--------ALN---DPRNIQQALRAVKKT--GKEAQLCIAYTTSPVHTLNYYLSLVKEL 172 (468)
T ss_pred --HHHHHHHCC-CCEEEE-cc--------cCC---CHHHHHHHHHHHHHc--CCEEEEEEEEEeCCcCcHHHHHHHHHHH
Confidence 223322222 122211 11 122 456667777777777 654332221 234656666666666666
Q ss_pred HhcCCCeEEE
Q 013195 372 KEYKFPQVHI 381 (448)
Q Consensus 372 ~~l~~~~v~i 381 (448)
.+.+.+.+.+
T Consensus 173 ~~~Gad~I~I 182 (468)
T PRK12581 173 VEMGADSICI 182 (468)
T ss_pred HHcCCCEEEE
Confidence 6666665543
No 325
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=33.40 E-value=1.6e+02 Score=25.56 Aligned_cols=67 Identities=21% Similarity=0.192 Sum_probs=46.6
Q ss_pred CceEEEEecCCccC-hhHHHHHHHHHHhCCCeeecC---------------------CCCCcEEEEeecccccchHHHHH
Q 013195 58 TETIYMKTFGCSHN-QSDSEYMAGQLSAFGYALTDN---------------------SEEADIWLINTCTVKSPSQSAMD 115 (448)
Q Consensus 58 ~~~~~~~t~GC~~N-~~dse~~~~~L~~~G~~~~~~---------------------~~~aDvv~intctv~~~a~~~~~ 115 (448)
.++|+++ |++-| .-+|-.+...|.+.||++.+- ++.-|+|-+ |+.+ +.+.
T Consensus 16 ~K~IAvV--G~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdv----FR~~--e~~~ 87 (140)
T COG1832 16 AKTIAVV--GASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDV----FRRS--EAAP 87 (140)
T ss_pred CceEEEE--ecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEE----ecCh--hhhH
Confidence 3556554 77665 457778889999999998652 456788877 5543 3466
Q ss_pred HHHHHHhcCCCCEEEEc
Q 013195 116 TLIAKCKSAKKPLVVAG 132 (448)
Q Consensus 116 ~~i~~~~~~~~~vVvgG 132 (448)
.+++++-+.+++++..=
T Consensus 88 ~i~~eal~~~~kv~W~Q 104 (140)
T COG1832 88 EVAREALEKGAKVVWLQ 104 (140)
T ss_pred HHHHHHHhhCCCeEEEe
Confidence 77787777778888753
No 326
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=33.02 E-value=1.5e+02 Score=25.40 Aligned_cols=50 Identities=22% Similarity=0.204 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHh-CCCCEEEEEEEEeC-CCCCHHHHHHHHHHHHhcCCCeEE
Q 013195 327 YTLSDFRTVVDTLIEL-VPGMQIATDIICGF-PGETDEDFNQTVNLIKEYKFPQVH 380 (448)
Q Consensus 327 ~t~e~~~~~i~~ir~~-~pgi~i~~~~IvG~-PgET~ed~~~tl~~i~~l~~~~v~ 380 (448)
.+...+.+.++.+++. .+++ -+++|- +.-.+++..+..+.+++++++.++
T Consensus 66 ~~~~~~~~~~~~L~~~~~~~~----~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf 117 (137)
T PRK02261 66 HGEIDCRGLREKCIEAGLGDI----LLYVGGNLVVGKHDFEEVEKKFKEMGFDRVF 117 (137)
T ss_pred cCHHHHHHHHHHHHhcCCCCC----eEEEECCCCCCccChHHHHHHHHHcCCCEEE
Confidence 4567788889999988 3333 355554 333556677788888999987653
No 327
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=32.95 E-value=2.7e+02 Score=22.61 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccC
Q 013195 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394 (448)
Q Consensus 329 ~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~ 394 (448)
.+.+......+++..+ ..+.+.++=|.| ++.+.++.+.+-+...+.+.||.-.+|.-+.+
T Consensus 15 ~~~~~~l~~~l~~~~~-~~v~~~~lE~~P-----~i~~~l~~l~~~G~~~i~lvPl~L~~G~H~~~ 74 (103)
T cd03413 15 NAVYAALEYVLREEDP-ANVFVGTVEGYP-----GLDDVLAKLKKAGIKKVTLMPLMLVAGDHAHN 74 (103)
T ss_pred hhHHHHHHHHHHhcCC-CcEEEEEEcCCC-----CHHHHHHHHHHcCCCEEEEEehhheecccchh
Confidence 4566667777766633 445555554554 57888888888899999999999999987764
No 328
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=32.74 E-value=1.8e+02 Score=27.96 Aligned_cols=72 Identities=11% Similarity=0.167 Sum_probs=48.0
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeec------------CCCCCcEEEEeecccccchHHHHHHHHHHHhcCC
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD------------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~------------~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~ 125 (448)
.++||+...| .+..=.+++...|...|..... ...+-|++++ .|+.... ..+...++.+|++|
T Consensus 128 a~~I~i~G~G--~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~--iS~sg~~-~~~~~~~~~ak~~g 202 (278)
T PRK11557 128 ARRIILTGIG--ASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLA--ISYSGER-RELNLAADEALRVG 202 (278)
T ss_pred CCeEEEEecC--hhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEE--EcCCCCC-HHHHHHHHHHHHcC
Confidence 4567666555 6677778888888888976543 1345677776 4555443 34677788899999
Q ss_pred CCEE-EEccc
Q 013195 126 KPLV-VAGCV 134 (448)
Q Consensus 126 ~~vV-vgGc~ 134 (448)
.+|| +++-.
T Consensus 203 a~iI~IT~~~ 212 (278)
T PRK11557 203 AKVLAITGFT 212 (278)
T ss_pred CCEEEEcCCC
Confidence 8765 66643
No 329
>TIGR03842 F420_CPS_4043 F420-dependent oxidoreductase, CPS_4043 family. This model represents a family of putative F420-dependent oxidoreductases, fairly closely related to 5,10-methylenetetrahydromethanopterin reductase (mer, TIGR03555), both within the bacterial luciferase-like monoxygenase (LLM) family. A fairly deep split (to about 40 % sequence identity) in the present family separates a strictly Actinobacterial clade from an alpha/beta/gamma-proteobacterial clade, in which the member is often the only apparent F420-dependent LLM family member. The specific function, and whether Actinobacterial and Proteobacterial clades differ in function, are unknown.
Probab=32.57 E-value=4.8e+02 Score=25.80 Aligned_cols=106 Identities=16% Similarity=0.216 Sum_probs=60.6
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeec--CCc-----ChhHHHH
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT--NPP-----FILEHLK 293 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~--~p~-----~i~~~l~ 293 (448)
.+++++++.++..-+.|+..+|+.+.. +.+ .+-.-++-.+.... .++++++. ++. .+.....
T Consensus 10 ~~~~~~~~~a~~AE~~Gfd~~w~~e~~-~~~-----~~p~~~laa~A~~T-----~rI~lgt~v~~~~~r~P~~lA~~~a 78 (330)
T TIGR03842 10 PPASRVVELARQAERHGFDYVWTFDSH-ILW-----QEPFVIYSQILAAT-----RNMVVGPMVTNPLTRDWTVTASLFA 78 (330)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEecCcC-ccc-----cCHHHHHHHHHHhC-----CeeEEEeeecCCCCCCHHHHHHHHH
Confidence 368899999988888899999985532 211 13355677776654 36676542 222 2222221
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhcCCC-CCHHHHHHHHHHHHHhC
Q 013195 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELV 343 (448)
Q Consensus 294 el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~-~t~e~~~~~i~~ir~~~ 343 (448)
.| +.+..+ ++.+|+=+|... ...++.. ...+.+.+.++.+++.+
T Consensus 79 tL-D~lS~G----R~~lG~G~G~~~-~~~~g~~~~~~~~~~E~l~ilr~l~ 123 (330)
T TIGR03842 79 TL-NEMFGN----RTVCGIGRGDSA-VRVLGGKPATLARLREAMHVIKELA 123 (330)
T ss_pred HH-HHHcCC----ceEEeecCCcHH-HHHhCCCCchHHHHHHHHHHHHHHh
Confidence 11 222222 567888787643 3444432 24566777777777653
No 330
>PRK13774 formimidoylglutamase; Provisional
Probab=32.35 E-value=4.8e+02 Score=25.73 Aligned_cols=157 Identities=14% Similarity=0.163 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChh----HHHHHHHHH
Q 013195 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL----EHLKEIAEV 298 (448)
Q Consensus 223 ~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~----~~l~el~~l 298 (448)
.+.|-+.+..+.+.|..-|+|.|++..+|| .++.+.+..+.....-+.|. .|.+.-+ ..---+..+
T Consensus 106 ~~~i~~~v~~i~~~g~~pivlGGdHsit~g---------~~~a~~~~~~~~~igvI~~D-AH~Dlr~~~~~~~g~~~~~i 175 (311)
T PRK13774 106 QKEFAMLAAKSIANHRQTFLLGGGHDIAYA---------QYLATRKVYPTQSIGVINID-AHFDTRAEQQSTSGTSFRQI 175 (311)
T ss_pred HHHHHHHHHHHHHCCCeEEEEcCchHHHHH---------HHHHHHhhcCCCceEEEEeC-CCCCCCCCCCCCCChHHHHH
Confidence 355555566677788888888887766664 23333333220012233332 1111100 000012233
Q ss_pred HhCCCcccccccccCCCC--HHHHHhcCC-C---CCHHHHHH--------HHHHHHHhCCCCE--EEEEEE-------Ee
Q 013195 299 LRHPCVYSFLHVPVQSGS--DAVLSAMNR-E---YTLSDFRT--------VVDTLIELVPGMQ--IATDII-------CG 355 (448)
Q Consensus 299 ~~~~~~~~~l~iglES~s--~~vLk~m~R-~---~t~e~~~~--------~i~~ir~~~pgi~--i~~~~I-------vG 355 (448)
+..+...+.+++|+++.. ++.++.+++ + ++.+++.+ +++.+......+. +..|.+ +|
T Consensus 176 ~e~~~~~~~~~iGir~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~vyvS~DiD~lDps~aPGtg 255 (311)
T PRK13774 176 LEEDENTDYLVLGIAQGGNTQSLFDYAKEKKIDYVFADELLSHVSPTIKDMIERFIHEHDVIMFTICMDVIDSAFAPGVS 255 (311)
T ss_pred HhcCCCCCEEEEeeCCCCCCHHHHHHHHHcCCEEEEHHHhhhhhHHHHHHHHHHHHhcCCeEEEEEeeCCcChhhCCCCC
Confidence 332222357889999874 444444433 2 35555533 3333332111244 334444 44
Q ss_pred CC---CCCHHHHHHHHHHHHhc-CCCeEEEEeceeCCC
Q 013195 356 FP---GETDEDFNQTVNLIKEY-KFPQVHISQFYPRPG 389 (448)
Q Consensus 356 ~P---gET~ed~~~tl~~i~~l-~~~~v~i~~~~p~pG 389 (448)
-| |=|..++.+.++.+.+. ++-.+.+..|.|...
T Consensus 256 tP~pgGLt~~e~l~il~~l~~~~~v~g~DivE~nP~~D 293 (311)
T PRK13774 256 APAVLGLYPHTVLELAKRIIPSDKVSSVSIAEMNPTYD 293 (311)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCEEEEEEEEECCCCC
Confidence 44 35677777777776433 455567777777643
No 331
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=32.31 E-value=1.6e+02 Score=26.38 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=34.6
Q ss_pred ChhH-HHHHHHHHHhCCCeee---------cCCCCCcEEEEeecccccchHHHHHHHHHHHhc--CCCCEEEEccc
Q 013195 71 NQSD-SEYMAGQLSAFGYALT---------DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPLVVAGCV 134 (448)
Q Consensus 71 N~~d-se~~~~~L~~~G~~~~---------~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~--~~~~vVvgGc~ 134 (448)
|..+ .+.|+..|.. |+++. .+..++|.|+|-|.+........+...+++... .++++.+=+|.
T Consensus 13 ~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~~l~~yD~vIlGspi~~G~~~~~~~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 13 QTRKIASYIASELKE-GIQCDVVNLHRIEEPDLSDYDRVVIGASIRYGHFHSALYKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred hHHHHHHHHHHHhCC-CCeEEEEEhhhcCccCHHHCCEEEEECccccCCcCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 3444 5567777776 76643 123458999996655433333445555544321 35566555544
No 332
>COG0377 NuoB NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Energy production and conversion]
Probab=32.23 E-value=68 Score=29.12 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=32.6
Q ss_pred HHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEcccccc
Q 013195 82 LSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137 (448)
Q Consensus 82 L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~ 137 (448)
+++.|.-.-..+.+|||.+| +=|++.+-...++.+-++.-.+.=.|.+|.|.-+.
T Consensus 62 ~~RfG~~~r~SPRQaDvmIv-aGt~t~Kmap~lr~~YdQMPePK~VIsMGsCa~~G 116 (194)
T COG0377 62 LERFGEVPRASPRQADLMIV-AGTLTNKMAPALRRVYDQMPEPKWVISMGSCANSG 116 (194)
T ss_pred HHHhCcCCCCCcccccEEEE-eccchHHHHHHHHHHHHhCCCCcEEEEecccccCC
Confidence 44456444456889999999 66887664444444434443322235588886664
No 333
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=32.18 E-value=1.1e+02 Score=30.84 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=21.3
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecC
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSED 247 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~ 247 (448)
..++.+..+++|..|.+.|..-+.+.-++
T Consensus 26 ~t~Dv~atv~QI~~L~~aGceivRvavp~ 54 (359)
T PF04551_consen 26 DTRDVEATVAQIKRLEEAGCEIVRVAVPD 54 (359)
T ss_dssp -TT-HHHHHHHHHHHHHCT-SEEEEEE-S
T ss_pred CcccHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 36678999999999999998888876643
No 334
>KOG1687 consensus NADH-ubiquinone oxidoreductase, NUFS7/PSST/20 kDa subunit [Energy production and conversion]
Probab=31.90 E-value=54 Score=28.15 Aligned_cols=75 Identities=13% Similarity=0.317 Sum_probs=45.4
Q ss_pred eEEEEecCCccChhHHHHHHHH---HHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEcccc
Q 013195 60 TIYMKTFGCSHNQSDSEYMAGQ---LSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVP 135 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~~---L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a 135 (448)
.++=.|||-+--.+|...+++. +...|...-..+.+||++++ .-|+|++-.-..+++-++.-++.=.|-+|-|.-
T Consensus 33 SlWPltfGlaCCavEmmh~~a~RyD~DRyGvvfRaSPRQaD~iiv-AGTlTnKMAPalrkvYdQMPEpr~VisMGsCan 110 (168)
T KOG1687|consen 33 SLWPLTFGLACCAVEMMHLAAPRYDMDRYGVVFRASPRQADLIIV-AGTLTNKMAPALRKVYDQMPEPRWVISMGSCAN 110 (168)
T ss_pred CccchhhhhHHHHHHHHHhccccccccccceeecCCCccccEEEE-eccchhhhcHHHHHHHhhCCCCeeEEEeccccc
Confidence 4666677755555665555542 44456555567889999999 668988744444554455433222344777744
No 335
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=31.77 E-value=2.2e+02 Score=28.50 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=36.7
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCC
Q 013195 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~ 271 (448)
..+++.+++.++.+.+.|+..|.+.| .. |.-.+.++.++++.+.+.++
T Consensus 139 ~~~~e~l~~~a~~~~~~Ga~~i~i~D-T~---G~~~P~~v~~~v~~l~~~l~ 186 (333)
T TIGR03217 139 MTPPEKLAEQAKLMESYGADCVYIVD-SA---GAMLPDDVRDRVRALKAVLK 186 (333)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEcc-CC---CCCCHHHHHHHHHHHHHhCC
Confidence 35889999999999999999999987 23 33233567888888887664
No 336
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=31.61 E-value=3.7e+02 Score=23.78 Aligned_cols=54 Identities=13% Similarity=0.015 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEEeCCCC--------C------HHHHHHHHHHHHhcCCCeEEEEec
Q 013195 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGE--------T------DEDFNQTVNLIKEYKFPQVHISQF 384 (448)
Q Consensus 329 ~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgE--------T------~ed~~~tl~~i~~l~~~~v~i~~~ 384 (448)
.....+..+.++++ |+.+.+--....... . .+.+.+.+++++.++...+.+...
T Consensus 26 ~~~~~~~~~~~~~~--gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 26 DDEAEELRRLLEDY--GLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHHHHHHHHHHT--TCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECT
T ss_pred hHHHHHHHHHHHHc--CCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCc
Confidence 45677777888888 887655444333232 2 678888888999998887776644
No 337
>PRK05568 flavodoxin; Provisional
Probab=31.41 E-value=1.3e+02 Score=25.37 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCeeec---------CCCCCcEEEEeecccccch--HHHHHHHHHHHhc--CCCCEEEEccccc
Q 013195 76 EYMAGQLSAFGYALTD---------NSEEADIWLINTCTVKSPS--QSAMDTLIAKCKS--AKKPLVVAGCVPQ 136 (448)
Q Consensus 76 e~~~~~L~~~G~~~~~---------~~~~aDvv~intctv~~~a--~~~~~~~i~~~~~--~~~~vVvgGc~a~ 136 (448)
+.++..|.+.|+++.- +..++|.+++-|.+.-... ...+...++++.. +++++++-|++.+
T Consensus 20 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~~~~k~~~~f~t~G~ 93 (142)
T PRK05568 20 NLIAEGAKENGAEVKLLNVSEASVDDVKGADVVALGSPAMGDEVLEEGEMEPFVESISSLVKGKKLVLFGSYGW 93 (142)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCHHHHHhCCEEEEECCccCcccccchhHHHHHHHhhhhhCCCEEEEEEccCC
Confidence 4556666667876431 2357899999777754321 1234455555432 4667777676554
No 338
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=31.33 E-value=4.5e+02 Score=24.77 Aligned_cols=131 Identities=13% Similarity=0.213 Sum_probs=84.1
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (448)
+..++.+.|..-++.....|...+-+.. | ++|++..... ....++++.++|..+..-
T Consensus 21 LnNFd~~~V~~i~~AA~~ggAt~vDIAa--------d-----p~LV~~~~~~----s~lPICVSaVep~~f~~a------ 77 (242)
T PF04481_consen 21 LNNFDAESVAAIVKAAEIGGATFVDIAA--------D-----PELVKLAKSL----SNLPICVSAVEPELFVAA------ 77 (242)
T ss_pred ccccCHHHHHHHHHHHHccCCceEEecC--------C-----HHHHHHHHHh----CCCCeEeecCCHHHHHHH------
Confidence 4455677777777766556766554422 1 5666655543 234678888888644332
Q ss_pred HHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCC
Q 013195 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (448)
Q Consensus 298 l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~ 377 (448)
...+ ...+ |=||=+.+-.-+|.++.+++.+..+..|+..|++.++.++=.-+|- ++=.+...-+.+++.|
T Consensus 78 -V~AG--Adli----EIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~l---d~Qv~LA~~L~~~GaD 147 (242)
T PF04481_consen 78 -VKAG--ADLI----EIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPL---DQQVQLAEDLVKAGAD 147 (242)
T ss_pred -HHhC--CCEE----EecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccH---HHHHHHHHHHHHhCCc
Confidence 2221 2344 4456666777789999999999999999999999888877555542 2333444556677888
Q ss_pred eEEE
Q 013195 378 QVHI 381 (448)
Q Consensus 378 ~v~i 381 (448)
.++-
T Consensus 148 iIQT 151 (242)
T PF04481_consen 148 IIQT 151 (242)
T ss_pred EEEc
Confidence 6653
No 339
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=31.30 E-value=1.8e+02 Score=23.82 Aligned_cols=66 Identities=9% Similarity=0.079 Sum_probs=40.6
Q ss_pred ecCCccChhHHHHHHHHHHhCC-Ceeec-----------CCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-EE
Q 013195 65 TFGCSHNQSDSEYMAGQLSAFG-YALTD-----------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VA 131 (448)
Q Consensus 65 t~GC~~N~~dse~~~~~L~~~G-~~~~~-----------~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vV-vg 131 (448)
-+||-.+..=...++..|...| ..... ...+-|++++=| ....+. .+.+.++.++++|.+|| ++
T Consensus 4 i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~iS--~sG~t~-e~~~~~~~a~~~g~~vi~iT 80 (126)
T cd05008 4 IVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAIS--QSGETA-DTLAALRLAKEKGAKTVAIT 80 (126)
T ss_pred EEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEEEe--CCcCCH-HHHHHHHHHHHcCCeEEEEE
Confidence 3466677776777777787765 33221 123457776633 333332 46778889999998766 66
Q ss_pred cc
Q 013195 132 GC 133 (448)
Q Consensus 132 Gc 133 (448)
+-
T Consensus 81 ~~ 82 (126)
T cd05008 81 NV 82 (126)
T ss_pred CC
Confidence 64
No 340
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=31.25 E-value=6.1e+02 Score=26.27 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=75.2
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeec-CCcChhHHHHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-NPPFILEHLKEIA 296 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~-~p~~i~~~l~el~ 296 (448)
+|.++-+-|-.-++...++|+.-|.+.|. ++ | ..++..-++..++. . ......+.|+ .|-+-.+...+++
T Consensus 92 YrhyaDDvVe~Fv~ka~~nGidvfRiFDA-lN----D-~RNl~~ai~a~kk~-G--~h~q~~i~YT~sPvHt~e~yv~~a 162 (472)
T COG5016 92 YRHYADDVVEKFVEKAAENGIDVFRIFDA-LN----D-VRNLKTAIKAAKKH-G--AHVQGTISYTTSPVHTLEYYVELA 162 (472)
T ss_pred ccCCchHHHHHHHHHHHhcCCcEEEechh-cc----c-hhHHHHHHHHHHhc-C--ceeEEEEEeccCCcccHHHHHHHH
Confidence 77777666666678888899988887662 22 1 14677777777663 3 3345555554 5554444443333
Q ss_pred HHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC-CEEEEEEEEeC
Q 013195 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG-MQIATDIICGF 356 (448)
Q Consensus 297 ~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pg-i~i~~~~IvG~ 356 (448)
+- .+.+|+.|.. +|.|---.++....+.++.+++.++= +.++++-.-|+
T Consensus 163 ke--------l~~~g~DSIc---iKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~ 212 (472)
T COG5016 163 KE--------LLEMGVDSIC---IKDMAGLLTPYEAYELVKAIKKELPVPVELHTHATSGM 212 (472)
T ss_pred HH--------HHHcCCCEEE---eecccccCChHHHHHHHHHHHHhcCCeeEEecccccch
Confidence 32 2335555543 46676667889999999999998652 45666666665
No 341
>PRK10494 hypothetical protein; Provisional
Probab=31.16 E-value=1.1e+02 Score=29.44 Aligned_cols=61 Identities=11% Similarity=0.124 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccc------------hHHHHHHHHHHHhc-CCCCEEEEccc
Q 013195 73 SDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSP------------SQSAMDTLIAKCKS-AKKPLVVAGCV 134 (448)
Q Consensus 73 ~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~------------a~~~~~~~i~~~~~-~~~~vVvgGc~ 134 (448)
.=+..+...|+. .|...+...++|.|+|=++..... +..++..-++-+++ ++.+||++|-.
T Consensus 57 ~~~~~Ll~~LE~-~y~~~~~~~~~d~IVVLGgG~~~~~~~~~~~~l~~~~~~Rl~~a~~L~r~~~~~~ii~SGg~ 130 (259)
T PRK10494 57 PVADRLLRPIES-RYPTWNGSQKVDYIVVLGGGYTWNPQWAPSSNLINNSLPRLTEGIRLWRANPGAKLIFTGGA 130 (259)
T ss_pred HHHHHHHHHHhc-ccCCCCCCCCCCEEEEcCCCcCCCCCCCCcHhHhhhHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 345566777774 565444456789998877765421 11355555666665 35678888744
No 342
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=30.73 E-value=2.6e+02 Score=25.80 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=38.9
Q ss_pred cccccccCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHH----HHHHHHHHHhc
Q 013195 306 SFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED----FNQTVNLIKEY 374 (448)
Q Consensus 306 ~~l~iglES~s~~vLk~m~R-~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed----~~~tl~~i~~l 374 (448)
..+++-+.+|. .|+| |.+.+++.+.++.+.. .|++.+.+-+..+--.++.+. ++..++++.++
T Consensus 117 ~~v~lkvdtG~-----~~~R~G~~~~~~~~~~~~i~~-~~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l 184 (222)
T cd00635 117 LDVLVQVNIGG-----EESKSGVAPEELEELLEEIAA-LPNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDEL 184 (222)
T ss_pred CcEEEEEecCC-----CCCCCCCCHHHHHHHHHHHHc-CCCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHH
Confidence 35778888872 2577 5788888888888866 467766554444333444455 44445555554
No 343
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=30.34 E-value=4.4e+02 Score=24.31 Aligned_cols=133 Identities=12% Similarity=0.098 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCc
Q 013195 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (448)
Q Consensus 225 ~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~ 304 (448)
+.++-++.+.+.|+.++.+++-+...-+. ....++++++.+... ..+.++ -.... .+++.+++..+
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~---~~~~~~i~~i~~~~~----~pv~~~-GgI~~----~e~~~~~~~~G-- 95 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGE---PVNLELIEEIVKAVG----IPVQVG-GGIRS----LEDIERLLDLG-- 95 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCC---CCCHHHHHHHHHhcC----CCEEEe-CCcCC----HHHHHHHHHcC--
Confidence 44445555667899999999765431112 223678888877542 223232 11111 12234444332
Q ss_pred ccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEe------CCCCCHHHHHHHHHHHHhcCCCe
Q 013195 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG------FPGETDEDFNQTVNLIKEYKFPQ 378 (448)
Q Consensus 305 ~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG------~PgET~ed~~~tl~~i~~l~~~~ 378 (448)
+..+-+|-.... +.+.+.++.+.+.+. .+.++.|+-.| ....+..+..+.++.+.+.+.+.
T Consensus 96 ad~vvigs~~l~-----------dp~~~~~i~~~~g~~--~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~ 162 (234)
T cd04732 96 VSRVIIGTAAVK-----------NPELVKELLKEYGGE--RIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKA 162 (234)
T ss_pred CCEEEECchHHh-----------ChHHHHHHHHHcCCc--eEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCE
Confidence 455555543322 123333333332211 24555554322 21234445566777788888888
Q ss_pred EEEEec
Q 013195 379 VHISQF 384 (448)
Q Consensus 379 v~i~~~ 384 (448)
+.+...
T Consensus 163 iii~~~ 168 (234)
T cd04732 163 IIYTDI 168 (234)
T ss_pred EEEEee
Confidence 777644
No 344
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=30.33 E-value=1.5e+02 Score=29.50 Aligned_cols=54 Identities=22% Similarity=0.287 Sum_probs=36.0
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCC----CC---CCCCCHHHHHHHHHHhCC
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY----GR---DIGVNLPILLNAIVAELP 271 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~y----g~---d~~~~l~~ll~~l~~~~~ 271 (448)
....+++.++++++.+.+.|++.|.|.+.-.... |. +...-+...++.|++.++
T Consensus 51 ~~r~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~p 111 (324)
T PF00490_consen 51 VYRYSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAFP 111 (324)
T ss_dssp EEEEEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHST
T ss_pred eeeeCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchhcccCCCChHHHHHHHHHHhCC
Confidence 4456899999999999999999999988511111 11 111235778899988876
No 345
>PRK09529 bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta; Reviewed
Probab=30.29 E-value=1.5e+02 Score=32.46 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=41.4
Q ss_pred HHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccccchh
Q 013195 80 GQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRD 140 (448)
Q Consensus 80 ~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e 140 (448)
..+++.|+.+|+-.-..=+++| .|+ +..+.+..+++.+.++|.-|++.|.....+++
T Consensus 121 ~iiR~~GvplVdG~IPGvaaIv-G~a---pd~e~a~~Ia~Elq~r~~lvfl~G~l~EQl~e 177 (711)
T PRK09529 121 PILRKLGVELVDGTIPGFAVIV-GAA---PDSEKAKKIIKELQKKNLLTFLCGEVIEQLIE 177 (711)
T ss_pred HHHHhcCCceecCCCCeEEEEE-ecC---CChHHHHHHHHHHHHCCcEEEEcCcHHHHhhh
Confidence 3478889888886554444455 777 33367888999999999888888877666554
No 346
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=30.22 E-value=1.4e+02 Score=26.67 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=16.9
Q ss_pred EEEEecCCccChhHHHHHHHHHHhCCCee
Q 013195 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYAL 89 (448)
Q Consensus 61 ~~~~t~GC~~N~~dse~~~~~L~~~G~~~ 89 (448)
+.+.-+|++.| +...|++.|+..
T Consensus 1 i~i~d~g~~~~------~~~~l~~~G~~~ 23 (178)
T cd01744 1 VVVIDFGVKHN------ILRELLKRGCEV 23 (178)
T ss_pred CEEEecCcHHH------HHHHHHHCCCeE
Confidence 46788999976 466777788764
No 347
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=30.09 E-value=5e+02 Score=28.14 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=22.3
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEec
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSE 246 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~ 246 (448)
..++.+..++++..|.+.|..-+.++-+
T Consensus 40 ~T~D~~atv~Qi~~L~~aGceiVRvtvp 67 (606)
T PRK00694 40 ATTDVDGTVRQICALQEWGCDIVRVTVQ 67 (606)
T ss_pred CcccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3667888899999999999887777654
No 348
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=29.96 E-value=62 Score=31.22 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=25.0
Q ss_pred CccChhHHHH-HHHHHHhCCCeeecCCCCCcEEEEee
Q 013195 68 CSHNQSDSEY-MAGQLSAFGYALTDNSEEADIWLINT 103 (448)
Q Consensus 68 C~~N~~dse~-~~~~L~~~G~~~~~~~~~aDvv~int 103 (448)
|...++.+|. |...|...+ -.|.++++||+++|=.
T Consensus 32 ~~~~~~~~e~~l~~~l~~s~-~~T~dp~eAdlF~vP~ 67 (302)
T PF03016_consen 32 YETSQYALEVILHEALLNSP-FRTDDPEEADLFFVPF 67 (302)
T ss_pred cccccchHHHHHHHHHHhCC-cEeCCHHHCeEEEEEc
Confidence 7777777765 445555444 5778899999998843
No 349
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.88 E-value=1.7e+02 Score=23.28 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=20.8
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEE
Q 013195 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (448)
Q Consensus 94 ~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvg 131 (448)
..||+||+-|-.+-..+. ..+-+.+++.+++++..
T Consensus 47 ~~aD~VIv~t~~vsH~~~---~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 47 KKADLVIVFTDYVSHNAM---WKVKKAAKKYGIPIIYS 81 (97)
T ss_pred CCCCEEEEEeCCcChHHH---HHHHHHHHHcCCcEEEE
Confidence 567999996655543332 22333456678887753
No 350
>PRK07308 flavodoxin; Validated
Probab=29.56 E-value=3.5e+02 Score=23.01 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCeeec---------CCCCCcEEEEeeccccc-chHHHHHHHHHHHhcC---CCCEEEEccc
Q 013195 75 SEYMAGQLSAFGYALTD---------NSEEADIWLINTCTVKS-PSQSAMDTLIAKCKSA---KKPLVVAGCV 134 (448)
Q Consensus 75 se~~~~~L~~~G~~~~~---------~~~~aDvv~intctv~~-~a~~~~~~~i~~~~~~---~~~vVvgGc~ 134 (448)
.+.|+..|.+.|+.+.- +..++|+|++-|.|.-. .....+...++.++.. |+++.|=|..
T Consensus 19 A~~ia~~l~~~g~~~~~~~~~~~~~~~l~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~~l~~k~~~vfG~G 91 (146)
T PRK07308 19 ADIVADKLRELGHDVDVDECTTVDASDFEDADIAIVATYTYGDGELPDEIVDFYEDLADLDLSGKIYGVVGSG 91 (146)
T ss_pred HHHHHHHHHhCCCceEEEecccCCHhHhccCCEEEEEeCccCCCCCCHHHHHHHHHHhcCCCCCCEEEEEeeC
Confidence 45667778878865421 12467899986666541 1223355555555432 4455555553
No 351
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=29.54 E-value=2e+02 Score=27.18 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=46.8
Q ss_pred CcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhC
Q 013195 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (448)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~ 270 (448)
+.+.|+..--|||+. | ...|+.+.+-++.|++.|.-||.|.| .++ .|. ......+|++..+..
T Consensus 149 ~vRGYVScvvGCPye----------G---~v~P~kVa~V~k~ly~mGCyEiSLGD-TIG-vGT--pgtm~~ML~~Vmk~v 211 (316)
T KOG2368|consen 149 RVRGYVSCVVGCPYE----------G---AVQPSKVAEVVKKLYEMGCYEISLGD-TIG-VGT--PGTMKRMLDAVMKVV 211 (316)
T ss_pred ccceEEEEEecCCcc----------C---CcCHHHHHHHHHHHHhCCcEEEeccc-ccc-cCC--chhHHHHHHHHHHhC
Confidence 456788888899863 3 45788888889999999999999843 332 232 345678888887776
Q ss_pred C
Q 013195 271 P 271 (448)
Q Consensus 271 ~ 271 (448)
|
T Consensus 212 P 212 (316)
T KOG2368|consen 212 P 212 (316)
T ss_pred C
Confidence 5
No 352
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=29.18 E-value=3e+02 Score=23.75 Aligned_cols=66 Identities=12% Similarity=0.281 Sum_probs=37.1
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeeccccc--------chHHHHHHHHHHHhcCCCCEEEE
Q 013195 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS--------PSQSAMDTLIAKCKSAKKPLVVA 131 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~--------~a~~~~~~~i~~~~~~~~~vVvg 131 (448)
.+.+...|+.=..... +...|.+. .. ...+|+|+| .++.-. ...+.+.++++++++.+++||+.
T Consensus 36 ~~~v~n~g~~G~~~~~--~~~~l~~~----~~-~~~pd~v~i-~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 36 DVTVINAGVSGDTTAG--GLARLPAL----LA-QHKPDLVIL-ELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred CeEEEecCcCCcccHH--HHHHHHHH----HH-hcCCCEEEE-eccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 4667777776544332 22333221 11 136799988 344321 12345567788888888888876
Q ss_pred cc
Q 013195 132 GC 133 (448)
Q Consensus 132 Gc 133 (448)
+.
T Consensus 108 ~~ 109 (177)
T cd01822 108 GM 109 (177)
T ss_pred ec
Confidence 64
No 353
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=29.06 E-value=4.6e+02 Score=26.00 Aligned_cols=76 Identities=17% Similarity=0.207 Sum_probs=48.8
Q ss_pred cEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCC----CC---CCCCCHHHHHH
Q 013195 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY----GR---DIGVNLPILLN 264 (448)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~y----g~---d~~~~l~~ll~ 264 (448)
.+.+|.+..| .+..=.++..-|-+ ..|.+.+++|++.+.+.|++.|.|.+.-...+ |. +...-+...++
T Consensus 33 LI~PiFV~eg---~~~~~~I~SMPgv~-r~s~d~l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~givqravr 108 (330)
T COG0113 33 LIYPIFVVEG---ENIKEEIPSMPGVY-RYSLDRLVEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYDPDGIVQRAVR 108 (330)
T ss_pred eeEeEEEecC---CCCccccCCCCCce-eccHHHHHHHHHHHHhcCCCEEEEeCCCcccccCcccccccCCCChHHHHHH
Confidence 3445666666 33333455554544 45899999999999999999999987432211 11 11123567888
Q ss_pred HHHHhCC
Q 013195 265 AIVAELP 271 (448)
Q Consensus 265 ~l~~~~~ 271 (448)
.|++.++
T Consensus 109 ~ik~~~p 115 (330)
T COG0113 109 AIKEAFP 115 (330)
T ss_pred HHHHhCC
Confidence 8887765
No 354
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=28.91 E-value=4.7e+02 Score=25.63 Aligned_cols=83 Identities=18% Similarity=0.250 Sum_probs=60.3
Q ss_pred HhcCCC----CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEec------eeCCCC
Q 013195 321 SAMNRE----YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF------YPRPGT 390 (448)
Q Consensus 321 k~m~R~----~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~------~p~pGT 390 (448)
..++.+ .|.+++...++.|.+. -++.+..|+=-|| |+ .....+|+..+.+.+..-+++=-- .-++|.
T Consensus 51 ~slG~pD~~~~t~~e~~~~vrrI~~a-~~lPv~vD~dtGf-G~-~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk 127 (289)
T COG2513 51 ASLGLPDLGITTLDEVLADARRITDA-VDLPVLVDIDTGF-GE-ALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGK 127 (289)
T ss_pred HhcCCCccccccHHHHHHHHHHHHhh-cCCceEEeccCCC-Cc-HHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCC
Confidence 356654 4689999999998886 3688999999999 77 999999999999999877776422 224677
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q 013195 391 PAARMKKVPSAVVKKRSRELT 411 (448)
Q Consensus 391 ~~~~~~~v~~~~~~~R~~~l~ 411 (448)
++. +.++.-.|.+...
T Consensus 128 ~l~-----~~~e~v~rIkAa~ 143 (289)
T COG2513 128 ELV-----SIDEMVDRIKAAV 143 (289)
T ss_pred CcC-----CHHHHHHHHHHHH
Confidence 664 3445555544433
No 355
>PRK10425 DNase TatD; Provisional
Probab=28.88 E-value=4.9e+02 Score=24.88 Aligned_cols=76 Identities=16% Similarity=0.217 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChh----HHHHHHHH
Q 013195 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL----EHLKEIAE 297 (448)
Q Consensus 222 ~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~----~~l~el~~ 297 (448)
..+++++++ .+.|+..+..++.+... ..-..++.+..+ ..+..++ ++|.... +.++.+..
T Consensus 16 d~~~vl~~a---~~~gv~~~i~~~~~~~~---------~~~~~~l~~~~~---~v~~~~G-iHP~~~~~~~~~~~~~l~~ 79 (258)
T PRK10425 16 DRDDVVARA---FAAGVNGMLITGTNLRE---------SQQAQKLARQYP---SCWSTAG-VHPHDSSQWQAATEEAIIE 79 (258)
T ss_pred cHHHHHHHH---HHCCCCEEEEeCCCHHH---------HHHHHHHHHhCC---CEEEEEE-eCcCccccCCHHHHHHHHH
Confidence 566666664 45688888777644221 222334444443 3566677 7886653 23444555
Q ss_pred HHhCCCccccc-ccccCC
Q 013195 298 VLRHPCVYSFL-HVPVQS 314 (448)
Q Consensus 298 l~~~~~~~~~l-~iglES 314 (448)
+++.+. +..| .+|+.=
T Consensus 80 ~~~~~~-~vaIGEiGLDy 96 (258)
T PRK10425 80 LAAQPE-VVAIGECGLDF 96 (258)
T ss_pred hccCCC-EEEEeeeeecc
Confidence 555443 2334 366653
No 356
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=28.51 E-value=1.7e+02 Score=23.39 Aligned_cols=69 Identities=9% Similarity=0.027 Sum_probs=41.4
Q ss_pred EEEeecccccchHHHHHHHHHHHhcCCC--CEEEEccccccchh--hhc-CCcc-EEEcCCchhHHHHHHHHHhc
Q 013195 99 WLINTCTVKSPSQSAMDTLIAKCKSAKK--PLVVAGCVPQGSRD--LKE-LEGV-SIVGVQQIDRVVEVVEETLK 167 (448)
Q Consensus 99 v~intctv~~~a~~~~~~~i~~~~~~~~--~vVvgGc~a~~~~e--~~~-~~~d-~vvg~~~~~~i~~~l~~~~~ 167 (448)
|-..||.+-..|.+-...+.++++++|. .|+-+||+.--..+ ..- .+.. .+.+.-..+.++++++....
T Consensus 5 Vc~gT~ciAaGA~~V~~al~~ei~~~gl~v~v~~tGC~G~C~~ePlV~V~~p~g~v~Y~~V~~edv~~Iv~~~~~ 79 (92)
T cd03063 5 VPRDAAALALGADEVAEAIEAEAAARGLAATIVRNGSRGMYWLEPLVEVETPGGRVAYGPVTPADVASLLDAGAL 79 (92)
T ss_pred EeCChhhhhhCHHHHHHHHHHHHHHcCCeEEEEEecCceecCCCCEEEEEeCCCcEEEEeCCHHHHHHHHHHHhh
Confidence 4455777765554433344445666663 67888999865443 222 2444 55566666788888887543
No 357
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=28.24 E-value=3e+02 Score=21.70 Aligned_cols=61 Identities=8% Similarity=0.215 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCccc
Q 013195 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393 (448)
Q Consensus 329 ~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~ 393 (448)
.+.+....+.+++..|+..+..-++=+ +.-++.+.++.+.+.+.+.+.+.+|.-.+|.-..
T Consensus 15 ~~~~~~l~~~l~~~~~~~~v~~afle~----~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~~ 75 (101)
T cd03416 15 AEALEALAERLRERLPGDEVELAFLEL----AEPSLAEALDELAAQGATRIVVVPLFLLAGGHVK 75 (101)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEEc----CCCCHHHHHHHHHHcCCCEEEEEeeEeCCCcccc
Confidence 346777777887776666666666543 2346777788888888999999999999998653
No 358
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=28.19 E-value=3.8e+02 Score=25.81 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeE
Q 013195 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQV 379 (448)
Q Consensus 328 t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v 379 (448)
|.++..+.++.+.+...+ ...+|+|.-+.+.++..+..+.+++++.+.+
T Consensus 51 t~~Er~~l~~~~~~~~~~---~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v 99 (284)
T cd00950 51 SDEEHEAVIEAVVEAVNG---RVPVIAGTGSNNTAEAIELTKRAEKAGADAA 99 (284)
T ss_pred CHHHHHHHHHHHHHHhCC---CCcEEeccCCccHHHHHHHHHHHHHcCCCEE
Confidence 344444444444444222 1224444444444444444444444444433
No 359
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=27.99 E-value=2.7e+02 Score=27.90 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=39.7
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEe
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~ 281 (448)
.+++.+++.++.+.+.|...|.+.| .. |.-.+..+.++++.+.+.++ ....+.+.
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~D-T~---G~~~P~~v~~~v~~l~~~l~--~~i~ig~H 195 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVD-SA---GALLPEDVRDRVRALRAALK--PDTQVGFH 195 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCC-CC---CCCCHHHHHHHHHHHHHhcC--CCCeEEEE
Confidence 4899999999999999999999976 23 33233567888888887763 23444444
No 360
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.93 E-value=4.6e+02 Score=23.72 Aligned_cols=43 Identities=12% Similarity=0.148 Sum_probs=31.4
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHh
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~ 269 (448)
.|..++++.++-++.+.+.|++-+.+..-+. .-.++++.+.+.
T Consensus 18 ~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~---------~~~e~~~~~~~~ 60 (187)
T PRK07455 18 IRAPDLELGLQMAEAVAAGGMRLIEITWNSD---------QPAELISQLREK 60 (187)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCCC---------CHHHHHHHHHHh
Confidence 4556899999999999999999999876332 124666666553
No 361
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=27.91 E-value=3.6e+02 Score=26.12 Aligned_cols=27 Identities=7% Similarity=0.105 Sum_probs=11.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCe
Q 013195 352 IICGFPGETDEDFNQTVNLIKEYKFPQ 378 (448)
Q Consensus 352 ~IvG~PgET~ed~~~tl~~i~~l~~~~ 378 (448)
+|+|.-+.+.++..+..+.+++++.+.
T Consensus 73 vi~gv~~~~~~~~i~~a~~a~~~G~d~ 99 (292)
T PRK03170 73 VIAGTGSNSTAEAIELTKFAEKAGADG 99 (292)
T ss_pred EEeecCCchHHHHHHHHHHHHHcCCCE
Confidence 344443333344444444444444443
No 362
>PRK00957 methionine synthase; Provisional
Probab=27.59 E-value=5.8e+02 Score=24.84 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=36.4
Q ss_pred CCEEEEEEEEeCC--CCCHHHHHHHHHHHHh-cCCCeEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHHHHHHh
Q 013195 345 GMQIATDIICGFP--GETDEDFNQTVNLIKE-YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 416 (448)
Q Consensus 345 gi~i~~~~IvG~P--gET~ed~~~tl~~i~~-l~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~~~ 416 (448)
+-.+...+|=+-. -||.+++.+.++-+.+ ++++.+.+ -|+..+. ..+.+...+-++.+.+..+.
T Consensus 237 ~k~l~~GvId~~~~~~e~~e~v~~~i~~~~~~~~~~~l~l-----sp~CGl~---~~~~~~~~~kL~~l~~aa~~ 303 (305)
T PRK00957 237 GKKIGFGCVDTKSKSVESVDEIKALIEEGIEILGAENILI-----DPDCGMR---MLPRDVAFEKLKNMVEAARE 303 (305)
T ss_pred CCEEEEEEEcCCCCCCCCHHHHHHHHHHHHHhcCHHHEEE-----CCCcCCC---cCCHHHHHHHHHHHHHHHHH
Confidence 4455555555422 3788888877776555 44343333 3444432 34566777777777776653
No 363
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=27.51 E-value=4.9e+02 Score=23.98 Aligned_cols=135 Identities=10% Similarity=0.120 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCc
Q 013195 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (448)
Q Consensus 225 ~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~ 304 (448)
+.++-++.+.+.|++++.+++.+-..-|.. .-.++++++.+... ..+.++ -.... .+++..+...+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~---~~~~~i~~i~~~~~----~pi~~g-gGI~~----~ed~~~~~~~G-- 94 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGP---VNLPVIKKIVRETG----VPVQVG-GGIRS----LEDVEKLLDLG-- 94 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCC---CcHHHHHHHHHhcC----CCEEEe-CCcCC----HHHHHHHHHcC--
Confidence 344455556788999999988655433332 23678888876532 233332 11111 12234444332
Q ss_pred ccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE------eCCCCCHHHHHHHHHHHHhcCCCe
Q 013195 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC------GFPGETDEDFNQTVNLIKEYKFPQ 378 (448)
Q Consensus 305 ~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~Iv------G~PgET~ed~~~tl~~i~~l~~~~ 378 (448)
+..+-+|-.... +.+.+.++++.+... .+.++.|+-- |.-..+..+..+.++.+.+.+.+.
T Consensus 95 a~~vvlgs~~l~-----------d~~~~~~~~~~~g~~--~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ 161 (230)
T TIGR00007 95 VDRVIIGTAAVE-----------NPDLVKELLKEYGPE--RIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEG 161 (230)
T ss_pred CCEEEEChHHhh-----------CHHHHHHHHHHhCCC--cEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCE
Confidence 345545532221 134444444444311 3556666542 221122345556777778888888
Q ss_pred EEEEecee
Q 013195 379 VHISQFYP 386 (448)
Q Consensus 379 v~i~~~~p 386 (448)
+.++..+.
T Consensus 162 ii~~~~~~ 169 (230)
T TIGR00007 162 IIYTDISR 169 (230)
T ss_pred EEEEeecC
Confidence 77765544
No 364
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=27.41 E-value=5.8e+02 Score=25.36 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEecCCCCCCC-CCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHh
Q 013195 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (448)
Q Consensus 222 ~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~-d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (448)
++++++++++.+.+.|++.+-+-...- +.. +....-.+.++++.+.+. ....+++.. |-..-.+...++.+.+.
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~--~~~~~~~~~d~~~v~~ir~~~g--~~~~l~vDa-N~~~~~~~a~~~~~~l~ 213 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGP--DSGGEDLREDLARVRAVREAVG--PDVDLMVDA-NGRWDLAEAIRLARALE 213 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCC--CcchHHHHHHHHHHHHHHHhhC--CCCEEEEEC-CCCCCHHHHHHHHHHhC
Confidence 788999999999999999887732110 100 000123677788877664 455677763 32221222223333343
Q ss_pred CCCcccccccccCCCCHHHHHhc
Q 013195 301 HPCVYSFLHVPVQSGSDAVLSAM 323 (448)
Q Consensus 301 ~~~~~~~l~iglES~s~~vLk~m 323 (448)
..+ ..++.=|+...+-+-++.+
T Consensus 214 ~~~-i~~iEqP~~~~~~~~~~~l 235 (357)
T cd03316 214 EYD-LFWFEEPVPPDDLEGLARL 235 (357)
T ss_pred ccC-CCeEcCCCCccCHHHHHHH
Confidence 323 3466666655444444443
No 365
>PRK06242 flavodoxin; Provisional
Probab=27.18 E-value=73 Score=27.29 Aligned_cols=44 Identities=14% Similarity=0.021 Sum_probs=28.1
Q ss_pred CCCCcEEEEeecccccchHHHHHHHHHHHhc-CCCCEEEEccccc
Q 013195 93 SEEADIWLINTCTVKSPSQSAMDTLIAKCKS-AKKPLVVAGCVPQ 136 (448)
Q Consensus 93 ~~~aDvv~intctv~~~a~~~~~~~i~~~~~-~~~~vVvgGc~a~ 136 (448)
..++|.|++-|.+........+...++++.. .++++++=|.+.+
T Consensus 41 ~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~~~~~k~~~~f~t~g~ 85 (150)
T PRK06242 41 LSEYDLIGFGSGIYFGKFHKSLLKLIEKLPPVSGKKAFIFSTSGL 85 (150)
T ss_pred HhHCCEEEEeCchhcCCcCHHHHHHHHhhhhhcCCeEEEEECCCC
Confidence 3578999997765544333456667776644 4677776666554
No 366
>PRK06756 flavodoxin; Provisional
Probab=27.16 E-value=3.8e+02 Score=22.79 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCCCeeec-----C-----CCCCcEEEEeecccc-cchHHHHHHHHHHHhc---CCCCEEEEcccc
Q 013195 75 SEYMAGQLSAFGYALTD-----N-----SEEADIWLINTCTVK-SPSQSAMDTLIAKCKS---AKKPLVVAGCVP 135 (448)
Q Consensus 75 se~~~~~L~~~G~~~~~-----~-----~~~aDvv~intctv~-~~a~~~~~~~i~~~~~---~~~~vVvgGc~a 135 (448)
.+.|+..|++.|.++.- . ..++|.|++-|.|.- ......+...++.++. +|+++.+=|...
T Consensus 19 A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fgt~~ 93 (148)
T PRK06756 19 ADHIAGVIRETENEIEVIDIMDSPEASILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFGSCD 93 (148)
T ss_pred HHHHHHHHhhcCCeEEEeehhccCCHHHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCC
Confidence 36677778878876421 1 246799999765542 1112235555555532 355666555533
No 367
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=27.16 E-value=2e+02 Score=27.88 Aligned_cols=74 Identities=8% Similarity=0.137 Sum_probs=48.6
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeec--C----------CCCCcEEEEeecccccchHHHHHHHHHHHhcCC
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD--N----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~--~----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~ 125 (448)
.++++|. |+.-+..=.+++...|...|..... + ..+-|++++ .|+..... .+...++.+++.|
T Consensus 140 A~~I~i~--G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dl~I~--iS~sG~t~-~~~~~~~~ak~~g 214 (292)
T PRK11337 140 ARQRDLY--GAGGSAAIARDVQHKFLRIGVRCQAYDDAHIMLMSAALLQEGDVVLV--VSHSGRTS-DVIEAVELAKKNG 214 (292)
T ss_pred CCeEEEE--EecHHHHHHHHHHHHHhhCCCeEEEcCCHHHHHHHHhcCCCCCEEEE--EeCCCCCH-HHHHHHHHHHHCC
Confidence 4567764 5556777778888888888876541 1 345687776 34444332 4677888888899
Q ss_pred CCEE-EEccccc
Q 013195 126 KPLV-VAGCVPQ 136 (448)
Q Consensus 126 ~~vV-vgGc~a~ 136 (448)
.+|| +++....
T Consensus 215 ~~ii~IT~~~~s 226 (292)
T PRK11337 215 AKIICITNSYHS 226 (292)
T ss_pred CeEEEEeCCCCC
Confidence 8755 7765443
No 368
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=26.90 E-value=6.7e+02 Score=26.49 Aligned_cols=123 Identities=12% Similarity=0.103 Sum_probs=66.6
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHh
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (448)
.+.+-+++-++.+.+.|+..|.+.| .. |.-.+....++++++.+.. ...+.+.+=+-..+. +....+.+.
T Consensus 160 ~t~~y~~~~a~~l~~~Gad~I~IkD-ta---G~l~P~~v~~Lv~alk~~~----~~pi~~H~Hnt~GlA--~An~laAie 229 (468)
T PRK12581 160 HTLNYYLSLVKELVEMGADSICIKD-MA---GILTPKAAKELVSGIKAMT----NLPLIVHTHATSGIS--QMTYLAAVE 229 (468)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEECC-CC---CCcCHHHHHHHHHHHHhcc----CCeEEEEeCCCCccH--HHHHHHHHH
Confidence 3788889999999999999999876 23 3222346778888887632 234444421111111 111223333
Q ss_pred CCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 013195 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 301 ~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l 374 (448)
.+ +..++..+- -|..+.+.-....++..++.. |+.. |+ +.+.+.+..++++++
T Consensus 230 AG--ad~vD~ai~--------g~g~gagN~~tE~lv~~L~~~--g~~t------gi---Dl~~L~~~a~~~~~v 282 (468)
T PRK12581 230 AG--ADRIDTALS--------PFSEGTSQPATESMYLALKEA--GYDI------TL---DETLLEQAANHLRQA 282 (468)
T ss_pred cC--CCEEEeecc--------ccCCCcCChhHHHHHHHHHhc--CCCC------Cc---CHHHHHHHHHHHHHH
Confidence 32 566766654 344444444555556666555 5432 22 234454455555444
No 369
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=26.69 E-value=6.1e+02 Score=24.79 Aligned_cols=109 Identities=9% Similarity=0.011 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeec-------CCcChhHHHHH
Q 013195 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-------NPPFILEHLKE 294 (448)
Q Consensus 222 ~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~-------~p~~i~~~l~e 294 (448)
..+++++.++..-+.|+..+|+.+..+..|+. ..+-.-++-.+.... .++++++. +|-.+.+....
T Consensus 20 ~~~~~~~~a~~Ae~lGfd~~w~~Ehh~~~~~~--~~~p~~~la~lA~~T-----~rI~lgt~v~~~~~~~P~~~Ae~~at 92 (315)
T cd01096 20 VLDRMVDTGVLVDKLNFDTALVLEHHFSENGI--VGAPLTAAAFLLGLT-----ERLNVGSLNQVITTHHPVRIAEEALL 92 (315)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecccccCCCCC--CCCHHHHHHHHHHhc-----CEeEeeeeeeccCccCHHHHHHHHHH
Confidence 34666666766666799999987655544432 123456666676654 36666532 33333333221
Q ss_pred HHHHHhCCCcccccccccCCCCH-HHHHhcCCCC--CHHHHHHHHHHHHHh
Q 013195 295 IAEVLRHPCVYSFLHVPVQSGSD-AVLSAMNREY--TLSDFRTVVDTLIEL 342 (448)
Q Consensus 295 l~~l~~~~~~~~~l~iglES~s~-~vLk~m~R~~--t~e~~~~~i~~ir~~ 342 (448)
| +.+..+ ++.+|+=+|.. .....++... ..+.+.+.++.+++.
T Consensus 93 L-D~lS~G----R~~lGvg~G~~~~e~~~~G~~~~~~~~~~~E~l~~l~~l 138 (315)
T cd01096 93 L-DQMSKG----RFILGFSDCLYDKDMRFFGRPMESQRQLFEACYEIINDA 138 (315)
T ss_pred H-HHHcCC----CeEEEeeCCCCHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 2 222222 66777767654 3566676654 334456666666554
No 370
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=26.67 E-value=2.9e+02 Score=28.65 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=41.4
Q ss_pred eEEEEecCCccCh----hHHHHHHHHHHhCCCeeecCCCCCcEEEEe-ecccccchHHHHHHHHHHHhcCCCCEEEEccc
Q 013195 60 TIYMKTFGCSHNQ----SDSEYMAGQLSAFGYALTDNSEEADIWLIN-TCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCV 134 (448)
Q Consensus 60 ~~~~~t~GC~~N~----~dse~~~~~L~~~G~~~~~~~~~aDvv~in-tctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~ 134 (448)
.+|+-|.|=--++ .....|+..|.+.| .|.|++. ||..-... ...+++.+.+.|.+||.-.+.
T Consensus 306 ~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dg---------VDAVILTstCgtC~r~---~a~m~keiE~~GiPvv~~~~~ 373 (431)
T TIGR01918 306 EYFYSTVGNGTTVAESKQFAKEFVVELKQGG---------VDAVILTSTUGTCTRC---GATMVKEIERAGIPVVHMCTV 373 (431)
T ss_pred CeeEEcCCCCchHHHHHHHHHHHHHHHHHcC---------CCEEEEcCCCCcchhH---HHHHHHHHHHcCCCEEEEeec
Confidence 4566665655555 44556677777655 5666665 88876543 344566776789888877775
Q ss_pred cc
Q 013195 135 PQ 136 (448)
Q Consensus 135 a~ 136 (448)
..
T Consensus 374 ~p 375 (431)
T TIGR01918 374 IP 375 (431)
T ss_pred cc
Confidence 43
No 371
>TIGR01748 rhaA L-rhamnose isomerase. This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including E. coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. Characterization of this family is based on members in E. coli and Salmonella.
Probab=26.56 E-value=4.6e+02 Score=26.94 Aligned_cols=63 Identities=21% Similarity=0.279 Sum_probs=49.7
Q ss_pred HhcCCCCCHHHHHHHHHHHHHhCCCC-EEEEEEEEeCCCC-------CHHHHHHHHHHHHhcC--CCeEEEEec
Q 013195 321 SAMNREYTLSDFRTVVDTLIELVPGM-QIATDIICGFPGE-------TDEDFNQTVNLIKEYK--FPQVHISQF 384 (448)
Q Consensus 321 k~m~R~~t~e~~~~~i~~ir~~~pgi-~i~~~~IvG~PgE-------T~ed~~~tl~~i~~l~--~~~v~i~~~ 384 (448)
..-+|.-+.++..+=+..+.+..||- .++..++.+..++ .+++|...++++++.+ ++ ++.+.|
T Consensus 60 n~PG~aR~~~El~~D~~~~~~L~pg~~~vnLH~~y~~~d~~vdrd~~~p~hf~~w~~~Ak~~glglD-fNpn~F 132 (414)
T TIGR01748 60 NYPGKARTPSELRADLEKAMSLIPGKHRLNLHAIYLETDEPVSRDEIKPEHFKNWVEWAKANGLGLD-FNPTCF 132 (414)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCceeeecccccCCCcccccccCcccHHHHHHHHHHcCCCcC-cCcccC
Confidence 44567789999999999999998884 7888999974332 5699999999999985 45 555555
No 372
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=26.46 E-value=5.8e+02 Score=24.41 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeE
Q 013195 357 PGETDEDFNQTVNLIKEYKFPQV 379 (448)
Q Consensus 357 PgET~ed~~~tl~~i~~l~~~~v 379 (448)
|.+..++..+.++.+++++++.+
T Consensus 122 pDlp~ee~~~~~~~~~~~gl~~i 144 (256)
T TIGR00262 122 ADLPLEESGDLVEAAKKHGVKPI 144 (256)
T ss_pred CCCChHHHHHHHHHHHHCCCcEE
Confidence 45666777888888888887644
No 373
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=26.40 E-value=5.5e+02 Score=24.14 Aligned_cols=83 Identities=14% Similarity=0.062 Sum_probs=47.5
Q ss_pred HHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcc
Q 013195 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 305 (448)
Q Consensus 226 Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~ 305 (448)
....++.+.+.|...|.|.-+.. ..+.+++..|++. ....-+. +||.+-.+.++.+.....- -+.
T Consensus 73 p~~~i~~fa~agad~It~H~E~~--------~~~~r~i~~Ik~~-----G~kaGv~-lnP~Tp~~~i~~~l~~vD~-Vll 137 (220)
T COG0036 73 PDRYIEAFAKAGADIITFHAEAT--------EHIHRTIQLIKEL-----GVKAGLV-LNPATPLEALEPVLDDVDL-VLL 137 (220)
T ss_pred HHHHHHHHHHhCCCEEEEEeccC--------cCHHHHHHHHHHc-----CCeEEEE-ECCCCCHHHHHHHHhhCCE-EEE
Confidence 34566678889999999987621 3467888888763 2333443 5776544444333322110 000
Q ss_pred c--ccccccCCCCHHHHHhc
Q 013195 306 S--FLHVPVQSGSDAVLSAM 323 (448)
Q Consensus 306 ~--~l~iglES~s~~vLk~m 323 (448)
- .--+|=|++.+++|+++
T Consensus 138 MsVnPGfgGQ~Fi~~~l~Ki 157 (220)
T COG0036 138 MSVNPGFGGQKFIPEVLEKI 157 (220)
T ss_pred EeECCCCcccccCHHHHHHH
Confidence 0 11267889988887654
No 374
>PF13590 DUF4136: Domain of unknown function (DUF4136)
Probab=26.37 E-value=70 Score=27.37 Aligned_cols=43 Identities=23% Similarity=0.262 Sum_probs=28.5
Q ss_pred ceEEEEec---CCccChhHHH----HHHHHHHhCCCeeecCCCCCcEEEEee
Q 013195 59 ETIYMKTF---GCSHNQSDSE----YMAGQLSAFGYALTDNSEEADIWLINT 103 (448)
Q Consensus 59 ~~~~~~t~---GC~~N~~dse----~~~~~L~~~G~~~~~~~~~aDvv~int 103 (448)
+++.+..- .=..|..+-+ .+...|.+.||..+ .+.||++|--.
T Consensus 18 kTy~~~~~~~~~~~~~~~~~~~i~~~v~~~L~~~G~~~~--~~~aDl~V~~~ 67 (151)
T PF13590_consen 18 KTYAFVPSSSDPAQSNPLDDQRIQDAVEQELAAKGYRRV--PENADLLVSYH 67 (151)
T ss_pred CeEEEecCCcCccccCcHHHHHHHHHHHHHHHHCCCeec--ccCCCEEEEEE
Confidence 56666655 2344444443 45677888999998 67899987633
No 375
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=26.21 E-value=2e+02 Score=28.26 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=27.1
Q ss_pred EEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccccchhhh
Q 013195 98 IWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLK 142 (448)
Q Consensus 98 vv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e~~ 142 (448)
.|+-||||+-.. .++.+++.++++ .|-|.-.||..-|+..
T Consensus 168 AII~~tCTIpt~---~ly~ilE~l~R~--DvgVsS~HPaaVPgt~ 207 (340)
T TIGR01723 168 AIVTHACTIPTT---KFAKIFEDLGRE--DLNVTSYHPGCVPEMK 207 (340)
T ss_pred CEEeccccCChH---HHHHHHHhhCcc--cCCeeccCCCCCCCCC
Confidence 468899999654 355666665543 3556678888888754
No 376
>PLN02932 3-ketoacyl-CoA synthase
Probab=26.18 E-value=75 Score=33.55 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=34.7
Q ss_pred HHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcC-CCC-EEE--Eccccccch
Q 013195 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA-KKP-LVV--AGCVPQGSR 139 (448)
Q Consensus 78 ~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~-~~~-vVv--gGc~a~~~~ 139 (448)
....|++.|.. +++-|++|+||||+. +.-.-+..+++++.-+ +.+ .=+ .||.+....
T Consensus 156 a~~aL~~agi~----p~dId~lIv~tst~~-~~Pslaa~V~~~lGlr~~i~~fdL~gmGCSggl~a 216 (478)
T PLN02932 156 VDNLFRNTGIS----PSDIGILVVNSSTFN-PTPSLSSILVNKFKLRDNIKSLNLGGMGCSAGVIA 216 (478)
T ss_pred HHHHHHHcCCC----HHHCCEEEEEccCCC-CCCcHHHHHHHHhCCCCCceEEEeccchhhhHHHH
Confidence 34456667754 467899999999985 3222334556676533 432 324 389886654
No 377
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=26.16 E-value=2.8e+02 Score=20.70 Aligned_cols=33 Identities=9% Similarity=0.212 Sum_probs=21.1
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE
Q 013195 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV 129 (448)
Q Consensus 94 ~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vV 129 (448)
.+-|++++-|.+=.. ....++++++|+.|.++|
T Consensus 46 ~~~d~~i~iS~sg~t---~~~~~~~~~a~~~g~~ii 78 (87)
T cd04795 46 RKGDVVIALSYSGRT---EELLAALEIAKELGIPVI 78 (87)
T ss_pred CCCCEEEEEECCCCC---HHHHHHHHHHHHcCCeEE
Confidence 445777765544332 236677888888887765
No 378
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=25.86 E-value=1.8e+02 Score=27.28 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCCeee----cC---------CCCCcEEEEeeccc
Q 013195 75 SEYMAGQLSAFGYALT----DN---------SEEADIWLINTCTV 106 (448)
Q Consensus 75 se~~~~~L~~~G~~~~----~~---------~~~aDvv~intctv 106 (448)
++.|+..|++.||++. ++ ..+.|+|+..+|+-
T Consensus 25 ~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~ 69 (215)
T cd03142 25 HGTIAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIA 69 (215)
T ss_pred HHHHHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCC
Confidence 5678999999999975 22 23789999966653
No 379
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=25.71 E-value=3.1e+02 Score=27.32 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=37.6
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC--------CCCHHHHHHHHHHhCC
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--------GVNLPILLNAIVAELP 271 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~--------~~~l~~ll~~l~~~~~ 271 (448)
...++++.++++++.+.+.|++.|.|.+. ... +|. ..-+...++.|++.++
T Consensus 53 ~~r~s~d~l~~~v~~~~~~Gi~av~LFgv--~~~-Kd~~gs~A~~~~g~v~rair~iK~~~p 111 (323)
T PRK09283 53 VYRLSIDLLVKEAEEAVELGIPAVALFGV--PEL-KDEDGSEAYNPDGLVQRAIRAIKKAFP 111 (323)
T ss_pred ceeeCHHHHHHHHHHHHHCCCCEEEEeCc--CCC-CCcccccccCCCCHHHHHHHHHHHhCC
Confidence 44568999999999999999999999885 122 111 1235778888887765
No 380
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=25.70 E-value=3.2e+02 Score=28.38 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=42.5
Q ss_pred ceEEEEecCCccChh----HHHHHHHHHHhCCCeeecCCCCCcEEEEe-ecccccchHHHHHHHHHHHhcCCCCEEEEcc
Q 013195 59 ETIYMKTFGCSHNQS----DSEYMAGQLSAFGYALTDNSEEADIWLIN-TCTVKSPSQSAMDTLIAKCKSAKKPLVVAGC 133 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~----dse~~~~~L~~~G~~~~~~~~~aDvv~in-tctv~~~a~~~~~~~i~~~~~~~~~vVvgGc 133 (448)
-.+|+-|.|=--++. ..+.|+..|.+.| .|.|++. ||.+-... ...+++.+.+.|.++|.-.|
T Consensus 305 ~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dg---------VDAvILtstCgtCtrc---ga~m~keiE~~GIPvV~i~~ 372 (431)
T TIGR01917 305 FKYFYSTTGNGTAVANSKQFAKEFSKELLAAG---------VDAVILTSTUGTCTRC---GATMVKEIERAGIPVVHICT 372 (431)
T ss_pred cCeeEEccCCCccHHHHHHHHHHHHHHHHHcC---------CCEEEEcCCCCcchhH---HHHHHHHHHHcCCCEEEEee
Confidence 345666666555443 4566777787766 5566555 88876543 34456677678998887777
Q ss_pred ccc
Q 013195 134 VPQ 136 (448)
Q Consensus 134 ~a~ 136 (448)
...
T Consensus 373 ~~p 375 (431)
T TIGR01917 373 VTP 375 (431)
T ss_pred chh
Confidence 654
No 381
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.26 E-value=3.9e+02 Score=26.74 Aligned_cols=138 Identities=10% Similarity=0.094 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhC
Q 013195 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 301 (448)
Q Consensus 222 ~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~ 301 (448)
++++.+++++.+.++|++.+-+--. . .+. ..=.+.++++.+.+. ....+++.. |...-.+...++.+.+..
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg---~--~~~-~~d~~~v~air~~~g--~~~~l~vDa-N~~~~~~~A~~~~~~l~~ 211 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIG---Y--PTA-DEDLAVVRSIRQAVG--DGVGLMVDY-NQSLTVPEAIERGQALDQ 211 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcC---C--CCh-HhHHHHHHHHHHhhC--CCCEEEEeC-CCCcCHHHHHHHHHHHHc
Confidence 4778889999888889887765211 0 010 112577888877664 456677763 322212222223333333
Q ss_pred CCcccccccccCCCCHHHHHhcCCC-----------CCHHHHHHHHHHHHHhCCCCEEEEEEE-EeCCCCCHHHHHHHHH
Q 013195 302 PCVYSFLHVPVQSGSDAVLSAMNRE-----------YTLSDFRTVVDTLIELVPGMQIATDII-CGFPGETDEDFNQTVN 369 (448)
Q Consensus 302 ~~~~~~l~iglES~s~~vLk~m~R~-----------~t~e~~~~~i~~ir~~~pgi~i~~~~I-vG~PgET~ed~~~tl~ 369 (448)
-+ ..++.=|+...+.+.++.+.+. ++..++.+.++. ...+ .+..++. +| ....+.+..+
T Consensus 212 ~~-i~~iEeP~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~---~~~d-~i~~~~~~~G----Git~~~~ia~ 282 (355)
T cd03321 212 EG-LTWIEEPTLQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSA---GACD-LVMPDLMKIG----GVTGWLRASA 282 (355)
T ss_pred CC-CCEEECCCCCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHh---CCCC-eEecCHhhhC----CHHHHHHHHH
Confidence 23 3577778877776666555442 234444444332 1001 1122221 12 2356666777
Q ss_pred HHHhcCCC
Q 013195 370 LIKEYKFP 377 (448)
Q Consensus 370 ~i~~l~~~ 377 (448)
+++..++.
T Consensus 283 ~A~~~gi~ 290 (355)
T cd03321 283 LAEQAGIP 290 (355)
T ss_pred HHHHcCCe
Confidence 77777764
No 382
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=25.20 E-value=3.4e+02 Score=26.95 Aligned_cols=51 Identities=18% Similarity=0.226 Sum_probs=37.8
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC--------CCCHHHHHHHHHHhCC
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--------GVNLPILLNAIVAELP 271 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~--------~~~l~~ll~~l~~~~~ 271 (448)
....+++.++++++.+.+.|++.|.|.+.. .. +|. ..-+...++.|++.++
T Consensus 55 ~~r~sid~l~~~~~~~~~~Gi~~v~lFgv~--~~-Kd~~gs~A~~~~g~v~~air~iK~~~p 113 (322)
T PRK13384 55 ISRLPESALADEIERLYALGIRYVMPFGIS--HH-KDAKGSDTWDDNGLLARMVRTIKAAVP 113 (322)
T ss_pred cceECHHHHHHHHHHHHHcCCCEEEEeCCC--CC-CCCCcccccCCCChHHHHHHHHHHHCC
Confidence 445689999999999999999999998852 11 221 1235678888888775
No 383
>PRK01076 L-rhamnose isomerase; Provisional
Probab=25.16 E-value=6.5e+02 Score=25.98 Aligned_cols=107 Identities=15% Similarity=0.192 Sum_probs=66.9
Q ss_pred hcCCCCCHHHHHHHHHHHHHhCCCC-EEEEEEEEeCCCC-------CHHHHHHHHHHHHhcC--CCeEEEEeceeCCCCc
Q 013195 322 AMNREYTLSDFRTVVDTLIELVPGM-QIATDIICGFPGE-------TDEDFNQTVNLIKEYK--FPQVHISQFYPRPGTP 391 (448)
Q Consensus 322 ~m~R~~t~e~~~~~i~~ir~~~pgi-~i~~~~IvG~PgE-------T~ed~~~tl~~i~~l~--~~~v~i~~~~p~pGT~ 391 (448)
.-++.-+.++..+=+..+.+..||- .++..++....|+ .+++|...++++++.+ ++ ++.+.|+ -|
T Consensus 65 ypG~aR~~~El~~D~~~~~~L~pg~~~vnLH~~y~~~~~~vdrd~~~p~~f~~w~~~Ak~~GlglD-fNpn~Fs----h~ 139 (419)
T PRK01076 65 YPGKARNADELRADLEKALSLIPGKHRLNLHAIYLESDTPVDRDEIEPEHFKNWVEWAKENGLGLD-FNPTCFS----HP 139 (419)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCceeeecccccCCCcccccccCcccHHHHHHHHHHcCCCcC-cCcccCC----Cc
Confidence 4467789999999999999998884 7888888885443 4699999999999985 45 5555552 23
Q ss_pred ccC----CCCCCHHHHHHHHHHHHHHHHhhchhhcCCCcEE--EEEEE
Q 013195 392 AAR----MKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVE--RIWIT 433 (448)
Q Consensus 392 ~~~----~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~g~~~--~vlve 433 (448)
.++ +...++++.+...+-..+..+-.+......|.+- .+++-
T Consensus 140 ~~k~G~SLs~pD~~iR~fwI~H~~~c~~I~~~~g~~lGs~~~~niWip 187 (419)
T PRK01076 140 LSADGFTLSHPDPEIRQFWIEHCKASRRISAYFGEELGTPCVMNIWIP 187 (419)
T ss_pred cccCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeEEeC
Confidence 333 2234455544433322222222233345566554 55553
No 384
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=25.00 E-value=3e+02 Score=24.29 Aligned_cols=38 Identities=11% Similarity=0.102 Sum_probs=24.8
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-EEccc
Q 013195 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAGCV 134 (448)
Q Consensus 94 ~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vV-vgGc~ 134 (448)
.+-|++++-|.+=.+ ..+.+.++.++++|.+|| +++-.
T Consensus 100 ~~~Dv~I~iS~SG~t---~~~i~~~~~ak~~Ga~vI~IT~~~ 138 (177)
T cd05006 100 QPGDVLIGISTSGNS---PNVLKALEAAKERGMKTIALTGRD 138 (177)
T ss_pred CCCCEEEEEeCCCCC---HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 445887775544322 346778888999998765 66653
No 385
>PRK05474 xylose isomerase; Provisional
Probab=24.83 E-value=4.8e+02 Score=27.17 Aligned_cols=143 Identities=13% Similarity=0.230 Sum_probs=71.8
Q ss_pred HHHCCCcEEEEEecCCCCCCCCCC---CCHHHHHHHHHHhCCCCCc--ceEEEe-ecCCcChh-------HHH-------
Q 013195 233 VIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGS--TMLRIG-MTNPPFIL-------EHL------- 292 (448)
Q Consensus 233 l~~~G~~ei~~~~~~~~~yg~d~~---~~l~~ll~~l~~~~~~~~~--~~iri~-~~~p~~i~-------~~l------- 292 (448)
+.+.|+..+.|.|.|+...|.... .+|.++++.+.+.....+. .|..-+ +.+|.... ..+
T Consensus 88 ~~kLg~~~~~FHD~D~~peg~s~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~GA~Tnpd~~Vra~A~~q 167 (437)
T PRK05474 88 FTKLGVPYYCFHDVDVAPEGASLKEYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMAGAATNPDPDVFAYAAAQ 167 (437)
T ss_pred HHHhCCCeeccCccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccCCcCCCCCHHHHHHHHHH
Confidence 566799999999999988876542 3456666666554432222 122211 11222211 111
Q ss_pred -HHHHHHHhCCCcccccccccCCCCHHHH-HhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeC-CCCC-----HHHH
Q 013195 293 -KEIAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGET-----DEDF 364 (448)
Q Consensus 293 -~el~~l~~~~~~~~~l~iglES~s~~vL-k~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~-PgET-----~ed~ 364 (448)
.+-+++.+.-+.-+++.-|=+-|-+..+ ..|+| -.+.+.+.++.+.++.|++.+...|.+=. |.|- .-|.
T Consensus 168 vk~alD~~~eLGge~yV~WgGREGye~~~ntD~~~--e~d~~~~~l~~v~dYa~~iGf~~~f~IEPKP~EPr~hqyd~d~ 245 (437)
T PRK05474 168 VKTALDATKRLGGENYVFWGGREGYETLLNTDLKR--EREQLARFLQMVVDYKHKIGFKGTFLIEPKPQEPTKHQYDYDA 245 (437)
T ss_pred HHHHHHHHHHhCCCeEEECCCcccccchhhcCHHH--HHHHHHHHHHHHHHHhhhcCCCceEEeccCCCCCCCccccccH
Confidence 1111111111111222222222322222 22222 24677888888888766665544554433 4443 2467
Q ss_pred HHHHHHHHhcCCC
Q 013195 365 NQTVNLIKEYKFP 377 (448)
Q Consensus 365 ~~tl~~i~~l~~~ 377 (448)
.-++-|+++++.+
T Consensus 246 at~l~fl~~~gl~ 258 (437)
T PRK05474 246 ATVYGFLKQYGLE 258 (437)
T ss_pred HHHHHHHHHhCCc
Confidence 7788888888765
No 386
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=24.79 E-value=1.4e+02 Score=30.62 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEE--------EEEEeCCCCC--HHHHHHHHHHHHhcCC
Q 013195 327 YTLSDFRTVVDTLIELVPGMQIAT--------DIICGFPGET--DEDFNQTVNLIKEYKF 376 (448)
Q Consensus 327 ~t~e~~~~~i~~ir~~~pgi~i~~--------~~IvG~PgET--~ed~~~tl~~i~~l~~ 376 (448)
++.+++.+.-+.+.++ |+.+.. ++..|.|+-. .|.+.++++-+-+.++
T Consensus 40 W~~~~i~~~k~~ie~~--GL~~~vvEs~pv~e~Ik~g~~~rd~~Ienyk~~irNla~~GI 97 (394)
T TIGR00695 40 WEKEEIRKRKEYIESA--GLHWSVVESVPVHEAIKTGTGNYGRWIENYKQTLRNLAQCGI 97 (394)
T ss_pred CCHHHHHHHHHHHHHc--CCeEEEEeCCCccHHHHcCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 4555555555555555 544444 5555554411 2334444444445444
No 387
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=24.75 E-value=3.6e+02 Score=24.78 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=30.2
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCC--ee--ecC---CCCCcEEEEee
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGY--AL--TDN---SEEADIWLINT 103 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~--~~--~~~---~~~aDvv~int 103 (448)
|||+.|+-+||.= -..+...|++.|+ ++ +.+ .+++|.++|-.
T Consensus 1 ~~~~~iid~g~gn----~~s~~~al~~~g~~~~v~~~~~~~~l~~~d~lIlpG 49 (209)
T PRK13146 1 MMTVAIIDYGSGN----LRSAAKALERAGAGADVVVTADPDAVAAADRVVLPG 49 (209)
T ss_pred CCeEEEEECCCCh----HHHHHHHHHHcCCCccEEEECCHHHhcCCCEEEECC
Confidence 5789999999962 2446788888998 32 333 35789999954
No 388
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=24.69 E-value=3.2e+02 Score=22.18 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCc
Q 013195 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 391 (448)
Q Consensus 329 ~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~ 391 (448)
.+.+.+..+.+++..++..+.+-|+-. +.-++.+.++.+.+.+...+.+.+|.-.+|--
T Consensus 16 ~~~~~~l~~~l~~~~~~~~v~~afle~----~~P~~~~~l~~l~~~g~~~i~vvP~fL~~G~h 74 (117)
T cd03414 16 NADVAKIARLLEEGTGFARVETAFAAA----TRPSLPEALERLRALGARRVVVLPYLLFTGVL 74 (117)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEecC----CCCCHHHHHHHHHHcCCCEEEEEechhcCCch
Confidence 456777777787776656666666642 23367788888888889999999999999853
No 389
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=24.62 E-value=66 Score=30.35 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=22.0
Q ss_pred CCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-EEccc
Q 013195 93 SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAGCV 134 (448)
Q Consensus 93 ~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vV-vgGc~ 134 (448)
..++|+.+|.. +++.... ...+.+++++++-+.|| +|=|.
T Consensus 48 ~~~~dil~VeG-~i~~~~~-~~~~~~~~~~~~ak~vVA~GtCA 88 (228)
T TIGR03294 48 IPEMDVALVEG-SVCLQDE-HSLEEIKELREKAKVVVALGACA 88 (228)
T ss_pred CCCccEEEEeC-CCCCCcc-HHHHHHHHHhccCCEEEEeeccc
Confidence 35699999954 6654322 24556666654333333 55553
No 390
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=24.61 E-value=3.4e+02 Score=26.97 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=37.8
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCC----CCCC---CCCCHHHHHHHHHHhCC
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGA----YGRD---IGVNLPILLNAIVAELP 271 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~----yg~d---~~~~l~~ll~~l~~~~~ 271 (448)
...++++.++++++.+.+.|++.|.|.|..... .|.. ...-+...++.+++.++
T Consensus 48 ~~r~s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~p 108 (320)
T cd04823 48 VFRLSIDELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFP 108 (320)
T ss_pred ceeeCHHHHHHHHHHHHHcCCCEEEEecCCCcccCCcccccccCCCChHHHHHHHHHHhCC
Confidence 445689999999999999999999998852111 1111 01235678888887765
No 391
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.31 E-value=5.8e+02 Score=24.16 Aligned_cols=20 Identities=10% Similarity=0.355 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhcCCCeEEE
Q 013195 362 EDFNQTVNLIKEYKFPQVHI 381 (448)
Q Consensus 362 ed~~~tl~~i~~l~~~~v~i 381 (448)
+.++..++++..++...+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~ 113 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQL 113 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEE
Confidence 44555556666666655543
No 392
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=24.23 E-value=3.7e+02 Score=26.61 Aligned_cols=51 Identities=22% Similarity=0.233 Sum_probs=37.4
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC--------CCCHHHHHHHHHHhCC
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--------GVNLPILLNAIVAELP 271 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~--------~~~l~~ll~~l~~~~~ 271 (448)
....+++.++++++.+.+.|++.|.|.+.. .. +|. ..-+...++.|++.++
T Consensus 45 ~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~--~~-Kd~~gs~A~~~~g~v~~air~iK~~~p 103 (314)
T cd00384 45 VYRLSVDSLVEEAEELADLGIRAVILFGIP--EH-KDEIGSEAYDPDGIVQRAIRAIKEAVP 103 (314)
T ss_pred ceeeCHHHHHHHHHHHHHCCCCEEEEECCC--CC-CCCCcccccCCCChHHHHHHHHHHhCC
Confidence 445689999999999999999999998852 11 221 1235678888887765
No 393
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=24.22 E-value=2.1e+02 Score=27.56 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=46.3
Q ss_pred cChhHHHHHHHHHHhCCCeeecC--------------------CCCCcEEEEe--ecccccchHHHHHHHHHHHhcCCCC
Q 013195 70 HNQSDSEYMAGQLSAFGYALTDN--------------------SEEADIWLIN--TCTVKSPSQSAMDTLIAKCKSAKKP 127 (448)
Q Consensus 70 ~N~~dse~~~~~L~~~G~~~~~~--------------------~~~aDvv~in--tctv~~~a~~~~~~~i~~~~~~~~~ 127 (448)
.|..|-+.+...|+.-|..-..+ ..++|++++. +-+|...++..++++++++++.|..
T Consensus 112 ~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~t 191 (254)
T COG1121 112 LNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKT 191 (254)
T ss_pred ccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 37789999999999998654322 5789999985 3345556778899999999988876
Q ss_pred EEE
Q 013195 128 LVV 130 (448)
Q Consensus 128 vVv 130 (448)
|++
T Consensus 192 Il~ 194 (254)
T COG1121 192 VLM 194 (254)
T ss_pred EEE
Confidence 654
No 394
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=24.21 E-value=80 Score=25.30 Aligned_cols=37 Identities=16% Similarity=0.424 Sum_probs=23.9
Q ss_pred CCccChhHH----HHHHHHHHhCCCeee---------------cCCCCCcEEEEee
Q 013195 67 GCSHNQSDS----EYMAGQLSAFGYALT---------------DNSEEADIWLINT 103 (448)
Q Consensus 67 GC~~N~~ds----e~~~~~L~~~G~~~~---------------~~~~~aDvv~int 103 (448)
.|+--..-| +.+...+++.||++. ++..+||+|++-+
T Consensus 6 ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~ 61 (96)
T cd05569 6 ACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAA 61 (96)
T ss_pred ECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEec
Confidence 344444444 566677778899876 4456788888733
No 395
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=24.10 E-value=7.5e+02 Score=24.94 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=45.0
Q ss_pred cEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCC
Q 013195 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (448)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~ 271 (448)
..++|..+-|||+.-. -+++.+++-++.+.+.|+..|.|.| .+ |.-.+..+.++++.+.+.++
T Consensus 178 v~~~is~~fg~p~~~r-------------~~~~~l~~~~~~~~~~Gad~I~l~D-T~---G~a~P~~v~~lv~~l~~~~~ 240 (347)
T PLN02746 178 VRGYVSCVVGCPIEGP-------------VPPSKVAYVAKELYDMGCYEISLGD-TI---GVGTPGTVVPMLEAVMAVVP 240 (347)
T ss_pred EEEEEEeeecCCccCC-------------CCHHHHHHHHHHHHHcCCCEEEecC-Cc---CCcCHHHHHHHHHHHHHhCC
Confidence 3456667778865321 3789999999999999999999976 33 32223567889999987664
No 396
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=24.05 E-value=5.6e+02 Score=24.36 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHh
Q 013195 329 LSDFRTVVDTLIEL 342 (448)
Q Consensus 329 ~e~~~~~i~~ir~~ 342 (448)
.+.+.+.++.++..
T Consensus 93 ~~~~~~~i~~a~~l 106 (279)
T TIGR00542 93 LEIMEKAIQLARDL 106 (279)
T ss_pred HHHHHHHHHHHHHh
Confidence 34455555555555
No 397
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=23.96 E-value=2.5e+02 Score=26.92 Aligned_cols=92 Identities=12% Similarity=0.112 Sum_probs=50.6
Q ss_pred EEEecCCcc-ChhHHHHHHHHHHhCCCee---ecC--------CCCCcEEEEeecccccc--hHHHHHHHHHHHhcCCCC
Q 013195 62 YMKTFGCSH-NQSDSEYMAGQLSAFGYAL---TDN--------SEEADIWLINTCTVKSP--SQSAMDTLIAKCKSAKKP 127 (448)
Q Consensus 62 ~~~t~GC~~-N~~dse~~~~~L~~~G~~~---~~~--------~~~aDvv~intctv~~~--a~~~~~~~i~~~~~~~~~ 127 (448)
-++++.|.. ...+.+.+.......|.++ +.+ ...||+|.+|.-..... .-+...++++.+....+.
T Consensus 135 D~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~~~v 214 (260)
T PRK00278 135 DAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLAPLIPSDRLV 214 (260)
T ss_pred CEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHhCCCCCEE
Confidence 356677766 5567777888888889884 222 34689999986543221 122334444433211134
Q ss_pred EEEEcccc-ccchhhhcCCccE-EEcCC
Q 013195 128 LVVAGCVP-QGSRDLKELEGVS-IVGVQ 153 (448)
Q Consensus 128 vVvgGc~a-~~~~e~~~~~~d~-vvg~~ 153 (448)
|..||... +....+.....|. +||..
T Consensus 215 IaegGI~t~ed~~~~~~~Gad~vlVGsa 242 (260)
T PRK00278 215 VSESGIFTPEDLKRLAKAGADAVLVGES 242 (260)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEECHH
Confidence 55788753 2222333444564 66653
No 398
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=23.87 E-value=3.9e+02 Score=25.63 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=38.5
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEE
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvg 131 (448)
.++.+...|+.++..+-+.+...+.+ ...++|+++|++..-..-..+.+..+++.+++.|.+|++-
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~g~~v~~D 163 (303)
T TIGR03168 98 EETELNEPGPEISEEELEQLLEKLRE-------LLASGDIVVISGSLPPGVPPDFYAQLIAIARKRGAKVILD 163 (303)
T ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHH-------hccCCCEEEEeCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34445556777666655544444332 1356899999664321122344667777787788777653
No 399
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=23.85 E-value=3e+02 Score=25.24 Aligned_cols=64 Identities=16% Similarity=0.204 Sum_probs=40.9
Q ss_pred EEEeCC----CCCCCccceeeCccCCCccccCH-HHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHh
Q 013195 195 ILPINV----GCLGACTYCKTKHARGHLGSYTV-ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (448)
Q Consensus 195 ~i~isr----GC~~~CsFC~~~~~rg~~rsr~~-e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~ 269 (448)
|+.++| |++-.|.|.--...--..+-+++ .+.+.+ .+.++|+||.+.+ | ..+..++++|.+.
T Consensus 81 ylhTTR~~v~~~~~~~~F~E~HSHAt~h~ly~~~~~~l~~--------~~~lVLVDDEiST-G----~T~lnli~al~~~ 147 (191)
T PF15609_consen 81 YLHTTREPVPGVPPLLEFEEEHSHATDHLLYPPDPDLLRN--------ARTLVLVDDEIST-G----NTFLNLIRALHAK 147 (191)
T ss_pred eeeeccccCCCCccceeeeccccccccceecCCChHHhcC--------CCCEEEEecCccc-h----HHHHHHHHHHHHh
Confidence 566666 78888888854422222233322 222222 4689999988766 3 4689999999988
Q ss_pred CC
Q 013195 270 LP 271 (448)
Q Consensus 270 ~~ 271 (448)
++
T Consensus 148 ~p 149 (191)
T PF15609_consen 148 YP 149 (191)
T ss_pred CC
Confidence 76
No 400
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.71 E-value=6.9e+02 Score=24.37 Aligned_cols=92 Identities=21% Similarity=0.270 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhC
Q 013195 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 301 (448)
Q Consensus 222 ~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~ 301 (448)
++++++++++.+.+.|++.|-+-- |.+. ....+.++++.+.++ ...+++.. |-..-.+...++.+.+..
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~------g~~~-~~d~~~v~~lr~~~g---~~~l~vD~-n~~~~~~~A~~~~~~l~~ 202 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL------GGDL-EDDIERIRAIREAAP---DARLRVDA-NQGWTPEEAVELLRELAE 202 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe------CCCh-hhHHHHHHHHHHhCC---CCeEEEeC-CCCcCHHHHHHHHHHHHh
Confidence 688999999999999999887621 1111 234678888887653 34566653 322112222333344433
Q ss_pred CCcccccccccCCCCHHHHHhcCC
Q 013195 302 PCVYSFLHVPVQSGSDAVLSAMNR 325 (448)
Q Consensus 302 ~~~~~~l~iglES~s~~vLk~m~R 325 (448)
.+ ..++.=|+...+-+.++.+.+
T Consensus 203 ~~-l~~iEeP~~~~d~~~~~~L~~ 225 (316)
T cd03319 203 LG-VELIEQPVPAGDDDGLAYLRD 225 (316)
T ss_pred cC-CCEEECCCCCCCHHHHHHHHh
Confidence 33 346666665444455555543
No 401
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=23.65 E-value=39 Score=29.27 Aligned_cols=46 Identities=15% Similarity=0.243 Sum_probs=29.6
Q ss_pred HHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecee
Q 013195 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386 (448)
Q Consensus 339 ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p 386 (448)
+.++ |+....|+|+|+++...++..+..++++...-..+.++.|.-
T Consensus 56 A~~A--GL~p~~DyIig~~~~~l~~~~~l~~~v~~~~~~~l~L~Vyns 101 (138)
T PF04495_consen 56 AAKA--GLEPFFDYIIGIDGGLLDDEDDLFELVEANENKPLQLYVYNS 101 (138)
T ss_dssp HHHT--T--TTTEEEEEETTCE--STCHHHHHHHHTTTS-EEEEEEET
T ss_pred HHHC--CccccccEEEEccceecCCHHHHHHHHHHcCCCcEEEEEEEC
Confidence 3456 877778999999987777666667777777555666666643
No 402
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=23.57 E-value=3.9e+02 Score=26.52 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=38.1
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCC----C-CCC---CCCCHHHHHHHHHHhCC
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGA----Y-GRD---IGVNLPILLNAIVAELP 271 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~----y-g~d---~~~~l~~ll~~l~~~~~ 271 (448)
....+++.++++++.+.+.|++.|.|.+..... . |.. ...-+.+.++.|++.++
T Consensus 45 ~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~p 106 (320)
T cd04824 45 INRYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFP 106 (320)
T ss_pred ceeeCHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCChHHHHHHHHHHhCC
Confidence 445689999999999999999999998852111 1 111 01235778888888765
No 403
>PRK05569 flavodoxin; Provisional
Probab=23.53 E-value=2.1e+02 Score=24.16 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCCeeec---------CCCCCcEEEEeecccccc-h-HHHHHHHHHHHhc---CCCCEEEEccccc
Q 013195 76 EYMAGQLSAFGYALTD---------NSEEADIWLINTCTVKSP-S-QSAMDTLIAKCKS---AKKPLVVAGCVPQ 136 (448)
Q Consensus 76 e~~~~~L~~~G~~~~~---------~~~~aDvv~intctv~~~-a-~~~~~~~i~~~~~---~~~~vVvgGc~a~ 136 (448)
+.|+..|.+.|.++.- +..++|.+++-|.+.... . ...+...+++++. .|+++++-|.+.+
T Consensus 20 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~g~ 94 (141)
T PRK05569 20 NTIADGAKEAGAEVTIKHVADAKVEDVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPNENKKCILFGSYGW 94 (141)
T ss_pred HHHHHHHHhCCCeEEEEECCcCCHHHHhhCCEEEEECCCcCCCcCChHHHHHHHHHhhccCcCCCEEEEEeCCCC
Confidence 4555666667865421 224689999977665442 1 1234556665542 4567766665544
No 404
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=23.48 E-value=6.5e+02 Score=25.31 Aligned_cols=54 Identities=13% Similarity=-0.038 Sum_probs=33.9
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEe
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~ 281 (448)
.++++..++++...+.|++.|.+-.. +.+....-.+.++++.+.+. ....+++.
T Consensus 142 ~~~~~~~~~a~~~~~~Gf~~~Kik~~-----~~~~~~~di~~i~~vR~~~G--~~~~l~vD 195 (368)
T cd03329 142 ESPEAYADFAEECKALGYRAIKLHPW-----GPGVVRRDLKACLAVREAVG--PDMRLMHD 195 (368)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC-----CchhHHHHHHHHHHHHHHhC--CCCeEEEE
Confidence 36788888988888889998877421 10000123567777776664 34566665
No 405
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=23.34 E-value=2.2e+02 Score=31.07 Aligned_cols=46 Identities=15% Similarity=0.222 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCCEEEEEE----EEeCCCCCHHHHHHHHHHHHhcCCCe
Q 013195 333 RTVVDTLIELVPGMQIATDI----ICGFPGETDEDFNQTVNLIKEYKFPQ 378 (448)
Q Consensus 333 ~~~i~~ir~~~pgi~i~~~~----IvG~PgET~ed~~~tl~~i~~l~~~~ 378 (448)
.+.++.+|+.+|+..+.+-+ ++|+-.-.++-++..++...+.+++.
T Consensus 63 werl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv 112 (596)
T PRK14042 63 WSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDV 112 (596)
T ss_pred HHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHHHHHcCCCE
Confidence 34444444444554444444 45544334344444444444444443
No 406
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=23.30 E-value=2.8e+02 Score=19.69 Aligned_cols=43 Identities=9% Similarity=0.234 Sum_probs=32.4
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhCCCeeecCCC--CCcEEEEeecc
Q 013195 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE--EADIWLINTCT 105 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~--~aDvv~intct 105 (448)
++++. | ..+..+.+.+...+...|-.++.... .+..+++.+..
T Consensus 7 ~~~~~--g-~~~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~ 51 (80)
T smart00292 7 VFVIT--G-KFDKNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPE 51 (80)
T ss_pred EEEEe--C-CCCCccHHHHHHHHHHcCCEEecccCccceeEEEEcCCC
Confidence 45543 5 67888888999999999999988766 67777775533
No 407
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=23.24 E-value=3.1e+02 Score=22.60 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCeeecC--CC--------CCc--EEEEeecccccchHHHHHHHHHHHhcC--CCCEEEEcc
Q 013195 74 DSEYMAGQLSAFGYALTDN--SE--------EAD--IWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVVAGC 133 (448)
Q Consensus 74 dse~~~~~L~~~G~~~~~~--~~--------~aD--vv~intctv~~~a~~~~~~~i~~~~~~--~~~vVvgGc 133 (448)
=+..+...|.+.||+++.- .+ .+| .|+| ++. ....+....+++++++. +.||.+-+.
T Consensus 5 ~~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi-~~d--~~~~~~~~~ll~~i~~~~~~iPVFl~~~ 75 (115)
T PF03709_consen 5 ASRELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVI-SWD--GEEEDEAQELLDKIRERNFGIPVFLLAE 75 (115)
T ss_dssp HHHHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEE-ECH--HHHHHHHHHHHHHHHHHSTT-EEEEEES
T ss_pred HHHHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEE-Ecc--cccchhHHHHHHHHHHhCCCCCEEEEec
Confidence 3677889999999998753 22 344 4455 222 11223445667766655 468888777
No 408
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=23.00 E-value=4.9e+02 Score=24.39 Aligned_cols=143 Identities=17% Similarity=0.277 Sum_probs=77.2
Q ss_pred HHHHHHHHHCCCc--EEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCc
Q 013195 227 VGRVRTVIADGVK--EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (448)
Q Consensus 227 v~ei~~l~~~G~~--ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~ 304 (448)
..|++...+.|+. .|.|.+.. + . .+.|+...+. +...+.+.+ .++++.+.++.....+
T Consensus 51 ~~El~~a~~~g~~~~~Ii~~gp~-----k----~-~~~l~~a~~~----~~~~i~vDs------~~el~~l~~~~~~~~v 110 (251)
T PF02784_consen 51 PGELELALKAGFPPDRIIFTGPG-----K----S-DEELEEAIEN----GVATINVDS------LEELERLAELAPEARV 110 (251)
T ss_dssp HHHHHHHHHTTTTGGGEEEECSS------------HHHHHHHHHH----TESEEEESS------HHHHHHHHHHHCTHEE
T ss_pred ccchHHHHhhhccccceeEecCc-----c----c-HHHHHHHHhC----CceEEEeCC------HHHHHHHhccCCCcee
Confidence 4677777778774 68887742 1 1 3344443332 233444432 1344455566555445
Q ss_pred ccccccccCCCCHHHHHhc---CC-CCCHHH-HHHHHHHHHHhCCCCE-EEEEEEEeCCCCCHHHHHHHH----HHHHhc
Q 013195 305 YSFLHVPVQSGSDAVLSAM---NR-EYTLSD-FRTVVDTLIELVPGMQ-IATDIICGFPGETDEDFNQTV----NLIKEY 374 (448)
Q Consensus 305 ~~~l~iglES~s~~vLk~m---~R-~~t~e~-~~~~i~~ir~~~pgi~-i~~~~IvG~PgET~ed~~~tl----~~i~~l 374 (448)
.-++..++..++...+..- .| |.+.++ +.++++.+++. ++. +..++-+|--..+.+.+.+.+ +++.++
T Consensus 111 ~lRin~~~~~~~~~~~~~g~~~skFGi~~~~~~~~~l~~~~~~--~l~l~GlH~H~gS~~~~~~~~~~~~~~~~~~~~~~ 188 (251)
T PF02784_consen 111 GLRINPGIGAGSHPKISTGGKDSKFGIDIEEEAEEALERAKEL--GLRLVGLHFHVGSQILDAEAFRQAIERLLDLAEEL 188 (251)
T ss_dssp EEEBE-SESTTTSCHHCSSSHTSSSSBEGGGHHHHHHHHHHHT--TEEEEEEEE-HCSSBSSCHHHHHHHHHHHHHHHHH
T ss_pred eEEEeeccccccccccCCCCCCCcCCcChHHHHHHHHHhhccc--eEEEEEeeeeeccCCcchHHHHHHHHHHHHHHhhh
Confidence 5567766555555444321 13 567888 99999999998 754 445677775444545444443 444433
Q ss_pred ----C---CCeEEEEeceeCCCCc
Q 013195 375 ----K---FPQVHISQFYPRPGTP 391 (448)
Q Consensus 375 ----~---~~~v~i~~~~p~pGT~ 391 (448)
+ +..+.+--=.|.|-.+
T Consensus 189 ~~~~g~~~l~~idiGGG~~~~y~~ 212 (251)
T PF02784_consen 189 KEELGFEDLEFIDIGGGFGVPYDD 212 (251)
T ss_dssp HHHTTTTT-SEEEEESSB-SSSSS
T ss_pred ccccccccccEEEeeCCCCCCCcc
Confidence 2 5677776555555443
No 409
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=22.93 E-value=2.1e+02 Score=23.76 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCCeee--c-------CCCCCcEEEEeecccccc-h-HHHHHHHHHHHhc---CCCCEEEEccccc
Q 013195 76 EYMAGQLSAFGYALT--D-------NSEEADIWLINTCTVKSP-S-QSAMDTLIAKCKS---AKKPLVVAGCVPQ 136 (448)
Q Consensus 76 e~~~~~L~~~G~~~~--~-------~~~~aDvv~intctv~~~-a-~~~~~~~i~~~~~---~~~~vVvgGc~a~ 136 (448)
+.|+..|.+.|+++. + +..++|.|++-|.|.-.. . ...+...++++.. +|+++++=|...+
T Consensus 17 ~~i~~~~~~~g~~v~~~~~~~~~~~~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~~~gk~~~vfgt~g~ 91 (140)
T TIGR01753 17 NIIAEGLKEAGAEVDLLEVADADAEDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDIDLGGKKVALFGSGDW 91 (140)
T ss_pred HHHHHHHHhcCCeEEEEEcccCCHHHHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCCCCCCEEEEEecCCC
Confidence 455566666776542 1 234589999977774321 2 1344555555442 3555655555443
No 410
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=22.92 E-value=5.5e+02 Score=22.93 Aligned_cols=47 Identities=13% Similarity=0.299 Sum_probs=30.4
Q ss_pred ccccccCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCEEE-EEEEEeCCCC
Q 013195 307 FLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIA-TDIICGFPGE 359 (448)
Q Consensus 307 ~l~iglES~s~~vLk~m~R-~~t~e~~~~~i~~ir~~~pgi~i~-~~~IvG~PgE 359 (448)
.+++-+.++. .|+| |.+.+++.+.++.+.+. |++.+. ..+-+|....
T Consensus 108 ~v~lrv~~g~-----~~~R~G~~~~e~~~~~~~i~~~-~~l~l~Gl~~H~~~~~~ 156 (211)
T cd06808 108 RVLLRIDTGD-----ENGKFGVRPEELKALLERAKEL-PHLRLVGLHTHFGSADE 156 (211)
T ss_pred eEEEEEcCCC-----CCCCCCCCHHHHHHHHHHHHhC-CCCcEEEEEEecCCCCC
Confidence 4566666654 5777 67889999999998775 445443 3445554433
No 411
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=22.92 E-value=2.8e+02 Score=28.50 Aligned_cols=134 Identities=15% Similarity=0.162 Sum_probs=70.9
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCC---CCC-CCC---CCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGA---YGR-DIG---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~---yg~-d~~---~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~ 291 (448)
...+.++|.+.-+.+.+.|.+--++-+.++.. .|. +.. .+..+.|+.+.+. +..-++.+++-.-..+..
T Consensus 38 evW~~~~i~~~k~~ie~~GL~~~vvEs~pv~e~Ik~g~~~rd~~Ienyk~~irNla~~----GI~vicYNFMPv~dW~RT 113 (394)
T TIGR00695 38 EVWEKEEIRKRKEYIESAGLHWSVVESVPVHEAIKTGTGNYGRWIENYKQTLRNLAQC----GIKTVCYNFMPVLDWTRT 113 (394)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEeCCCccHHHHcCCCcHHHHHHHHHHHHHHHHHc----CCCEEEEEeccccccccc
Confidence 35577887777777777787654443321110 111 111 2455666666653 666677665422111110
Q ss_pred HHHHHHHHhCCCcc-cccccccCCCCHHHHHhcC--CCCCHHHHHHHHHHHHHhCCC--CEEEEEEEEeCCC
Q 013195 292 LKEIAEVLRHPCVY-SFLHVPVQSGSDAVLSAMN--REYTLSDFRTVVDTLIELVPG--MQIATDIICGFPG 358 (448)
Q Consensus 292 l~el~~l~~~~~~~-~~l~iglES~s~~vLk~m~--R~~t~e~~~~~i~~ir~~~pg--i~i~~~~IvG~Pg 358 (448)
- +..-+..+..+ .+=..-++..+..+|++-+ ..|+.+...++.+.+....+. ..+..++|.|+||
T Consensus 114 ~--l~~~~~~Ga~al~fd~~~~~~~d~~~l~r~~~~~~~~~e~~~~a~~~f~~~~~~~~~~L~~~ii~~lpG 183 (394)
T TIGR00695 114 D--LFYPLPDGSKALRFDKIKFAAFELHILKRPDAEKTYNQEELIRAVEEASDMSEQDIAQLTRNIIAGLPG 183 (394)
T ss_pred c--CcccCCCCceeEeeehhhhhccChHhhhcccccccCCHHHHHHHHHHHHhCCHHHHHHhhhhhhhcCCC
Confidence 0 11111122111 1122345556666775554 458888888888888765322 3678899999999
No 412
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=22.84 E-value=2.8e+02 Score=24.72 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCeeecC-----------------CCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEcc
Q 013195 75 SEYMAGQLSAFGYALTDN-----------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGC 133 (448)
Q Consensus 75 se~~~~~L~~~G~~~~~~-----------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc 133 (448)
+..+...|...||+.+-. ....|.++| |+. +..+..++.++|+.|+.|++-|.
T Consensus 68 ~~~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vL----vSg--D~DF~~Lv~~lre~G~~V~v~g~ 137 (160)
T TIGR00288 68 SDKLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVAL----VTR--DADFLPVINKAKENGKETIVIGA 137 (160)
T ss_pred cHHHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEEEE----Eec--cHhHHHHHHHHHHCCCEEEEEeC
Confidence 446778898999986421 245677776 222 34567788889888988877774
No 413
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=22.66 E-value=4e+02 Score=26.14 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=47.3
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeec------------CCCCCcEEEEeecccccchHHHHHHHHHHHhcCCC
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD------------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK 126 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~------------~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~ 126 (448)
++++|...| .+..-.++++..|...|+.... ...+-|++++=|.+=. + +.+.+.++.+++.|.
T Consensus 48 ~~I~i~G~G--~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~--t-~~~~~~~~~ak~~g~ 122 (326)
T PRK10892 48 GKVVVMGMG--KSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGE--S-SEILALIPVLKRLHV 122 (326)
T ss_pred CeEEEEeCc--HhHHHHHHHHHHHhcCCceeEEeChHHhhccccccCCCCCEEEEEeCCCC--C-HHHHHHHHHHHHCCC
Confidence 467776555 7777778888899988986542 1234577777454422 2 357778889988897
Q ss_pred CEE-EEccc
Q 013195 127 PLV-VAGCV 134 (448)
Q Consensus 127 ~vV-vgGc~ 134 (448)
+|| +++..
T Consensus 123 ~vi~iT~~~ 131 (326)
T PRK10892 123 PLICITGRP 131 (326)
T ss_pred cEEEEECCC
Confidence 765 66643
No 414
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=22.57 E-value=7.1e+02 Score=24.08 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=60.6
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC------CCHHHHHHHHHHhCCCCCcceEEEeecCCc----C--
Q 013195 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG------VNLPILLNAIVAELPPDGSTMLRIGMTNPP----F-- 287 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~------~~l~~ll~~l~~~~~~~~~~~iri~~~~p~----~-- 287 (448)
.++..++..++..+.+.|++.|.++.+|....|.... ....+|++.+..... ....+.+. .+|. .
T Consensus 81 d~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~--~~~~i~va-~~P~~hp~~~~ 157 (287)
T PF02219_consen 81 DRNREALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQEYG--DDFSIGVA-GYPEGHPEAPD 157 (287)
T ss_dssp TSBHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-SSHHHHHHHHHHHHG--GGSEEEEE-E-TTHHTTCSS
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhHHHHHHHHHHHHhcC--cccccccc-cCCCCCccccC
Confidence 3467899999999999999999888777655433111 236788888875432 22334443 2332 1
Q ss_pred hhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC--EEEEEEE
Q 013195 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM--QIATDII 353 (448)
Q Consensus 288 i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi--~i~~~~I 353 (448)
+..++..+.+-... + +.++ +| .--|+.+.+.+.++.+++. |+ .+...++
T Consensus 158 ~~~~~~~l~~Ki~a-G-A~f~----iT---------Q~~fd~~~~~~~~~~~~~~--g~~~pIi~GI~ 208 (287)
T PF02219_consen 158 FEAELKRLKKKIDA-G-ADFI----IT---------QPFFDAEAFERFLDRLREA--GIDVPIIPGIM 208 (287)
T ss_dssp HHHHHHHHHHHHHT-T-ESEE----EE---------EE-SSHHHHHHHHHHHHHT--THTSEEEEEEE
T ss_pred HHHHHHHHHHHHHC-C-CCEE----ec---------cccCCHHHHHHHHHHHHHc--CCCCcEEEEEe
Confidence 11222222221211 1 2221 01 1126788899999999998 65 5544444
No 415
>PTZ00120 D-tyrosyl-tRNA(Tyr) deacylase; Provisional
Probab=22.53 E-value=2.6e+02 Score=24.71 Aligned_cols=59 Identities=10% Similarity=0.124 Sum_probs=34.0
Q ss_pred CCCeEEEEeceeCCCCcccCCCC----CCHHHHHHHHHHHHHHHHh-h---chhhcCCCcEEEEEEEE
Q 013195 375 KFPQVHISQFYPRPGTPAARMKK----VPSAVVKKRSRELTSVFEA-F---TPYLGMEGRVERIWITE 434 (448)
Q Consensus 375 ~~~~v~i~~~~p~pGT~~~~~~~----v~~~~~~~R~~~l~~~~~~-~---~~~~~~~g~~~~vlve~ 434 (448)
+-+.+-+.+|+-+ +|.-.+-|+ .+++..++-+..+.+..+. + ......-|....|-++.
T Consensus 71 ~geiL~VSQFTL~-~~~KG~RPsF~~aa~~~~A~~Ly~~f~~~l~~~~~~~~V~~G~FGa~M~V~l~N 137 (154)
T PTZ00120 71 DYEVLVVSQFTLF-NVKKGNKPDFHLAMSPEDALPLYNKFVEKFKKEYAPEKIKTGKFGQYMNVSLVN 137 (154)
T ss_pred CCCEEEEEccccc-cCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcCCCCccEECcCCCCcEEEEEE
Confidence 3456778899999 886665553 4555555555555444442 2 12234556666665443
No 416
>PLN02615 arginase
Probab=22.47 E-value=7.9e+02 Score=24.60 Aligned_cols=155 Identities=16% Similarity=0.268 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHC-CCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhH-------HHHH
Q 013195 223 VESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE-------HLKE 294 (448)
Q Consensus 223 ~e~Iv~ei~~l~~~-G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~-------~l~e 294 (448)
.+.|-+.++.+.+. +..-|+|.|+...+| -.++++.+... ....-+.|. .|++.-.+ +---
T Consensus 132 ~~~i~~~v~~ll~~~~~~Pi~LGGDHsit~---------~~iral~~~~~-~~v~vI~fD-AH~Dl~~~~~g~~~shgs~ 200 (338)
T PLN02615 132 MNVISESVKLVMEEEPLRPLVLGGDHSISY---------PVVRAVSEKLG-GPVDILHLD-AHPDIYHAFEGNKYSHASS 200 (338)
T ss_pred HHHHHHHHHHHHhcCCCceEEECcchHhhH---------HHHHHHHHHhC-CCeEEEEEe-cCcCCCCCCCCCCcCchhH
Confidence 34444445555554 545677766665554 34555544331 023344443 33322110 0011
Q ss_pred HHHHHhCCCcccccccccCCCCHHHHHhcCCC----CCHHH---HHHHHHHHHHh--CCCCEEEEEE--E-------EeC
Q 013195 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE----YTLSD---FRTVVDTLIEL--VPGMQIATDI--I-------CGF 356 (448)
Q Consensus 295 l~~l~~~~~~~~~l~iglES~s~~vLk~m~R~----~t~e~---~~~~i~~ir~~--~pgi~i~~~~--I-------vG~ 356 (448)
+..++..+...+.+++|+++.+.+-.+.+++. ++..+ ..+.++.++.. .+.+.++.|+ + +|-
T Consensus 201 ~rr~~e~~~~~~~vqiGiR~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vYiS~DiDvlDpa~aPGtgt 280 (338)
T PLN02615 201 FARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSKDREKLENLKLGEGVKGVYISIDVDCLDPAFAPGVSH 280 (338)
T ss_pred HHHHhhCCCcCcEEEEeecCCCHHHHHHHHHCCCEEEEeeHhhhHHHHHHHHHhccCCCeEEEEEeeCccCHhhCCCCCC
Confidence 23333333234688999999887666544332 12222 24455555431 1224444443 3 233
Q ss_pred C---CCCHHHHHHHHHHHHhcCCCeEEEEeceeCCC
Q 013195 357 P---GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389 (448)
Q Consensus 357 P---gET~ed~~~tl~~i~~l~~~~v~i~~~~p~pG 389 (448)
| |=|..++.+.++.+.. ++--+.+.-++|...
T Consensus 281 pepgGLt~~e~l~il~~l~~-~vvG~DvvEv~P~~D 315 (338)
T PLN02615 281 IEPGGLSFRDVLNILHNLQG-DVVGADVVEFNPQRD 315 (338)
T ss_pred CCCCCCCHHHHHHHHHHhhC-CEEEEEEEEECCCCC
Confidence 3 3566777777766543 444556666777544
No 417
>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]
Probab=22.42 E-value=93 Score=34.45 Aligned_cols=55 Identities=25% Similarity=0.418 Sum_probs=37.1
Q ss_pred HHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcCC-CCEEEEccccc
Q 013195 80 GQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK-KPLVVAGCVPQ 136 (448)
Q Consensus 80 ~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~-~~vVvgGc~a~ 136 (448)
-.|+.+||++++. .+.||+|.++. ...++-..+...++.+++.+ .+|++||-..+
T Consensus 429 vvLs~NgyeVvdLGv~vp~~~Ile~a~~~~~D~IglSG--Lit~Sl~~M~~v~~em~r~~~iPvliGGAt~s 498 (842)
T COG1410 429 VVLSCNGYEVVDLGVMVPAEKILEAAEEEKADIIGLSG--LITPSLDEMKEVLEEMNRGGFIPVLIGGATTS 498 (842)
T ss_pred eeeecCCeEeeeccCcCcHHHHHHHHHHhccceeeecc--cccccHHHHHHHHHHhhhcCccceeecccccc
Confidence 4566667776654 46799999944 33455556777778887644 48999995444
No 418
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=22.04 E-value=6.8e+02 Score=24.16 Aligned_cols=49 Identities=8% Similarity=0.206 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeE
Q 013195 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQV 379 (448)
Q Consensus 328 t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v 379 (448)
|.++..+.++.+.+...| ..-+|+|....+.++..+..+.+++.+.+.+
T Consensus 52 t~~Er~~~~~~~~~~~~~---~~~viagv~~~~~~~ai~~a~~a~~~Gad~v 100 (288)
T cd00954 52 SVEERKQIAEIVAEAAKG---KVTLIAHVGSLNLKESQELAKHAEELGYDAI 100 (288)
T ss_pred CHHHHHHHHHHHHHHhCC---CCeEEeccCCCCHHHHHHHHHHHHHcCCCEE
Confidence 344444444444444322 2234444444444444444444455544433
No 419
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.89 E-value=6e+02 Score=24.86 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhC-CCCEEEEEEEEeC---CCCCHHHHHHHHHHHHhcCCCeEEEEece
Q 013195 332 FRTVVDTLIELV-PGMQIATDIICGF---PGETDEDFNQTVNLIKEYKFPQVHISQFY 385 (448)
Q Consensus 332 ~~~~i~~ir~~~-pgi~i~~~~IvG~---PgET~ed~~~tl~~i~~l~~~~v~i~~~~ 385 (448)
..+.++.+++.+ +++.+...+=.+. .|.|.++..+.++.+.+.+++.+++....
T Consensus 194 ~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 194 LLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred HHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 467777888875 3455555443321 34688898999999999999999887644
No 420
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=21.86 E-value=2.9e+02 Score=25.13 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=42.6
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecC-----CCCCcEEEEeecccccch---HHHHHHHHHHHhcCCCCEEE
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----SEEADIWLINTCTVKSPS---QSAMDTLIAKCKSAKKPLVV 130 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~-----~~~aDvv~intctv~~~a---~~~~~~~i~~~~~~~~~vVv 130 (448)
+++.|+-+|+. +...++..|++.|+++.-. .+++|.++|........+ .....+.++++.+.+. -|+
T Consensus 1 ~~~~v~~~~~~----~~~~~~~~l~~~G~~~~~~~~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~i~~~~~~~~-Pil 75 (200)
T PRK13143 1 MMIVIIDYGVG----NLRSVSKALERAGAEVVITSDPEEILDADGIVLPGVGAFGAAMENLSPLRDVILEAARSGK-PFL 75 (200)
T ss_pred CeEEEEECCCc----cHHHHHHHHHHCCCeEEEECCHHHHccCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC-CEE
Confidence 47888888854 3366889999999876421 346899999653222111 1234455666555554 344
Q ss_pred Eccc
Q 013195 131 AGCV 134 (448)
Q Consensus 131 gGc~ 134 (448)
|=|.
T Consensus 76 gIC~ 79 (200)
T PRK13143 76 GICL 79 (200)
T ss_pred EECH
Confidence 4454
No 421
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=21.72 E-value=8.1e+02 Score=24.47 Aligned_cols=94 Identities=19% Similarity=0.234 Sum_probs=52.7
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHh
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (448)
.++++.+++++.+++.|++.+-+- + |.+. ..-.+.++++.+.+. ....+++. .|-..-.+...++.+.+.
T Consensus 137 ~~~e~~~~~a~~~~~~Gf~~~Kik---v---g~~~-~~d~~~v~~vRe~~G--~~~~l~vD-aN~~~~~~~A~~~~~~l~ 206 (352)
T cd03328 137 YDDDRLREQLSGWVAQGIPRVKMK---I---GRDP-RRDPDRVAAARRAIG--PDAELFVD-ANGAYSRKQALALARAFA 206 (352)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEee---c---CCCH-HHHHHHHHHHHHHcC--CCCeEEEE-CCCCCCHHHHHHHHHHHH
Confidence 378889999999999999988762 1 1110 112577888887765 45677776 343221222222333332
Q ss_pred CCCcccccccccCCCCHHHHHhcCC
Q 013195 301 HPCVYSFLHVPVQSGSDAVLSAMNR 325 (448)
Q Consensus 301 ~~~~~~~l~iglES~s~~vLk~m~R 325 (448)
.-+ ..++.=|+...+-+-++.+.+
T Consensus 207 ~~~-~~~~EeP~~~~d~~~~~~l~~ 230 (352)
T cd03328 207 DEG-VTWFEEPVSSDDLAGLRLVRE 230 (352)
T ss_pred HhC-cchhhCCCChhhHHHHHHHHh
Confidence 222 245666665555555544433
No 422
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=21.65 E-value=6.3e+02 Score=24.32 Aligned_cols=51 Identities=14% Similarity=0.296 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEE
Q 013195 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381 (448)
Q Consensus 328 t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i 381 (448)
|.++..+.++.+.+...| ...+|+|.-..+.++..+..+.+++.+.|.+-+
T Consensus 49 s~~Er~~~~~~~~~~~~~---~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v 99 (285)
T TIGR00674 49 SHEEHKKVIEFVVDLVNG---RVPVIAGTGSNATEEAISLTKFAEDVGADGFLV 99 (285)
T ss_pred CHHHHHHHHHHHHHHhCC---CCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEE
Confidence 445555555555554333 223455554444444445555555555554433
No 423
>COG1490 Dtd D-Tyr-tRNAtyr deacylase [Translation, ribosomal structure and biogenesis]
Probab=21.61 E-value=2.9e+02 Score=23.99 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=39.8
Q ss_pred EEEEeC-CCCCHHHHHHHHHHHHhcCC-----------------CeEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHHH
Q 013195 351 DIICGF-PGETDEDFNQTVNLIKEYKF-----------------PQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412 (448)
Q Consensus 351 ~~IvG~-PgET~ed~~~tl~~i~~l~~-----------------~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~ 412 (448)
-+++|. +++|+++.+...+-+..+++ ..+.+++|+-+-.|.-.+.|..+...+-+..++|++
T Consensus 28 lvLvGV~~~Dt~~~a~~l~~Ki~~lRiF~D~~gKmN~sv~di~G~iL~VSQFTL~adt~kG~RPsFs~aa~p~~A~~lYe 107 (145)
T COG1490 28 LVLVGVTHDDTEEDADYLAEKILNLRIFEDEEGKMNLSVQDVGGEILVVSQFTLYADTKKGRRPSFSKAAKPDQAEELYE 107 (145)
T ss_pred EEEEeecCCCCHHHHHHHHHHHhceEeecCcccccccCHHHcCCcEEEEEEEEEeecccCCCCCCccccCChHHHHHHHH
Confidence 445565 66788888877777766642 357788999988887666653333333333444444
Q ss_pred HHH
Q 013195 413 VFE 415 (448)
Q Consensus 413 ~~~ 415 (448)
.+.
T Consensus 108 ~f~ 110 (145)
T COG1490 108 YFV 110 (145)
T ss_pred HHH
Confidence 443
No 424
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=21.42 E-value=65 Score=29.90 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=18.8
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEE
Q 013195 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVV 130 (448)
Q Consensus 94 ~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVv 130 (448)
.+||+|++|.-.|......++.+.+..+ ++|.+||.
T Consensus 121 s~AdvVf~Nn~~F~~~l~~~L~~~~~~l-k~G~~IIs 156 (205)
T PF08123_consen 121 SDADVVFVNNTCFDPDLNLALAELLLEL-KPGARIIS 156 (205)
T ss_dssp HC-SEEEE--TTT-HHHHHHHHHHHTTS--TT-EEEE
T ss_pred cCCCEEEEeccccCHHHHHHHHHHHhcC-CCCCEEEE
Confidence 5799999998777655444544444443 45677763
No 425
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=21.41 E-value=3.3e+02 Score=27.11 Aligned_cols=85 Identities=18% Similarity=0.225 Sum_probs=0.0
Q ss_pred CCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCC--CCCHHHHHHHHHHHHHh--CCCCEEEEEEEEeCCC-
Q 013195 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR--EYTLSDFRTVVDTLIEL--VPGMQIATDIICGFPG- 358 (448)
Q Consensus 284 ~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R--~~t~e~~~~~i~~ir~~--~pgi~i~~~~IvG~Pg- 358 (448)
+|..+++.. +.++...+++ ||+ ++-+..++. ++ .-|.+++.+.|..+.+. ...+.+.+||--+...
T Consensus 199 h~RNl~D~q--lkaI~~~gGv-----Igv-~~~~~fl~~-~~~~~atldd~v~hI~h~v~~~G~dhVglGsDf~g~~~~p 269 (313)
T COG2355 199 HPRNLSDEQ--LKAIAETGGV-----IGV-NFIPAFLRP-GGAARATLDDLVRHIDHFVELVGIDHVGLGSDFDGGTGPP 269 (313)
T ss_pred CCCCCCHHH--HHHHHhcCCE-----EEE-EeehhhccC-CCCCCCCHHHHHHHHHHHHHhcCcceeEecccccCCCCCc
Q ss_pred ---CCHHHHHHHHHHHHhcCCC
Q 013195 359 ---ETDEDFNQTVNLIKEYKFP 377 (448)
Q Consensus 359 ---ET~ed~~~tl~~i~~l~~~ 377 (448)
|+...+...++-+.+.++.
T Consensus 270 ~gled~~~l~~l~~~L~~~G~~ 291 (313)
T COG2355 270 DGLEDVGKLPNLTAALIERGYS 291 (313)
T ss_pred hhhcChhHHHHHHHHHHHcCCC
No 426
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=21.34 E-value=1.6e+02 Score=28.72 Aligned_cols=39 Identities=13% Similarity=0.302 Sum_probs=25.9
Q ss_pred EEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccccchhh
Q 013195 98 IWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDL 141 (448)
Q Consensus 98 vv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e~ 141 (448)
.|+-||||+-.. .++.++..+++++ |-|.-.||..-|+.
T Consensus 170 AII~~tCTIpt~---~ly~~le~l~R~D--vgIsS~HPaaVPgt 208 (342)
T PRK00961 170 AIVTHACTIPTT---KFAKIFKDLGRDD--LNVTSYHPGAVPEM 208 (342)
T ss_pred CEEeccccCCHH---HHHHHHHHhCccc--CCeeccCCCCCCCC
Confidence 468899998654 3566666665433 55667788777764
No 427
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=21.29 E-value=4.8e+02 Score=25.18 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=37.3
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEE
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvg 131 (448)
.++++...|+.+...+-+.+...+. ..+.+|++++++..........+..+++.+++.|.+|++=
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~i~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D 166 (309)
T PRK10294 102 EQYRFVMPGAALNEDEFRQLEEQVL--------EIESGAILVISGSLPPGVKLEKLTQLISAAQKQGIRCIID 166 (309)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHH--------hcCCCCEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEe
Confidence 3566677787754443333222221 1245889999664332222345667788888888877754
No 428
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=21.28 E-value=2.8e+02 Score=21.18 Aligned_cols=48 Identities=19% Similarity=0.336 Sum_probs=32.5
Q ss_pred ChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEE
Q 013195 71 NQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (448)
Q Consensus 71 N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvg 131 (448)
..-|.|.++..++..|+..+--. + .....+..+++++.++ .|..++++
T Consensus 18 ~s~DGe~ia~~~~~~G~~~iRGS-----------s-~rgg~~Alr~~~~~lk-~G~~~~it 65 (74)
T PF04028_consen 18 RSRDGELIARVLERFGFRTIRGS-----------S-SRGGARALREMLRALK-EGYSIAIT 65 (74)
T ss_pred cCcCHHHHHHHHHHcCCCeEEeC-----------C-CCcHHHHHHHHHHHHH-CCCeEEEe
Confidence 35699999999999998865422 1 1224456778888886 55555554
No 429
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=21.21 E-value=6.3e+02 Score=24.13 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEE
Q 013195 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381 (448)
Q Consensus 328 t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i 381 (448)
|.++..+.++.+.+..++ ..-+|+|.-+.+.++..+..+.+++++.+.+-+
T Consensus 48 s~~Er~~l~~~~~~~~~~---~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v 98 (281)
T cd00408 48 TDEERKEVIEAVVEAVAG---RVPVIAGVGANSTREAIELARHAEEAGADGVLV 98 (281)
T ss_pred CHHHHHHHHHHHHHHhCC---CCeEEEecCCccHHHHHHHHHHHHHcCCCEEEE
Confidence 445555555555554322 123455554445555555555555555554433
No 430
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=21.16 E-value=7.1e+02 Score=23.55 Aligned_cols=136 Identities=11% Similarity=0.080 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCc
Q 013195 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (448)
Q Consensus 225 ~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~ 304 (448)
+.++-++.+.+.|++++.+++-+-. +.. ...-.++++++.+... ..+.++ ---... +++.+++..+
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~--~~~-~~~n~~~i~~i~~~~~----~pv~~~-GGi~s~----~d~~~~~~~G-- 96 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITAS--SEG-RTTMIDVVERTAETVF----IPLTVG-GGIKSI----EDVDKLLRAG-- 96 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcc--ccc-ChhhHHHHHHHHHhcC----CCEEEE-CCCCCH----HHHHHHHHcC--
Confidence 3344555566789999999986533 111 1234678888877542 222222 111111 2234444432
Q ss_pred ccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC--CCEEEEEEEEe--------------CCCCCHHHHHHHH
Q 013195 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP--GMQIATDIICG--------------FPGETDEDFNQTV 368 (448)
Q Consensus 305 ~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~p--gi~i~~~~IvG--------------~PgET~ed~~~tl 368 (448)
+..+.+|-.... ++ +.++.+.+.++ .+.++.|+-=| -..++..+..+.+
T Consensus 97 a~~vivgt~~~~-----------~p----~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~ 161 (254)
T TIGR00735 97 ADKVSINTAAVK-----------NP----ELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWA 161 (254)
T ss_pred CCEEEEChhHhh-----------Ch----HHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHH
Confidence 456666643321 12 23334444444 36677775312 1223456667777
Q ss_pred HHHHhcCCCeEEEEeceeCCCC
Q 013195 369 NLIKEYKFPQVHISQFYPRPGT 390 (448)
Q Consensus 369 ~~i~~l~~~~v~i~~~~p~pGT 390 (448)
+.+.+.+++.+.++.... -||
T Consensus 162 ~~l~~~G~~~iivt~i~~-~g~ 182 (254)
T TIGR00735 162 KEVEKLGAGEILLTSMDK-DGT 182 (254)
T ss_pred HHHHHcCCCEEEEeCcCc-ccC
Confidence 888888999887766433 444
No 431
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=21.16 E-value=7.2e+02 Score=24.02 Aligned_cols=53 Identities=21% Similarity=0.179 Sum_probs=34.0
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC--CCCHHHHHHHHHHhCC
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELP 271 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~--~~~l~~ll~~l~~~~~ 271 (448)
.-..++++|++++....+.|..-+.+..-|.. -|... ...+.++++.|.+..+
T Consensus 20 ~lP~tpeEia~~A~~c~~AGAa~vH~H~R~~~-~G~~s~d~~~~~e~~~~IR~~~p 74 (272)
T PF05853_consen 20 ALPITPEEIAADAVACYEAGAAIVHIHARDDE-DGRPSLDPELYAEVVEAIRAACP 74 (272)
T ss_dssp TS--SHHHHHHHHHHHHHHTESEEEE-EE-TT-TS-EE--HHHHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEeecCCCC-CCCcCCCHHHHHHHHHHHHHHCC
Confidence 34557999999999999999988888754111 12221 1356788888887643
No 432
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=21.11 E-value=2.2e+02 Score=24.68 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=23.8
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-EEcc
Q 013195 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAGC 133 (448)
Q Consensus 94 ~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vV-vgGc 133 (448)
.+-|++++-|-+=.+ ..+.+.++.++++|.++| +++.
T Consensus 78 ~~~D~~i~iS~sG~t---~~~~~~~~~a~~~g~~ii~iT~~ 115 (154)
T TIGR00441 78 QKGDVLLGISTSGNS---KNVLKAIEAAKDKGMKTITLAGK 115 (154)
T ss_pred CCCCEEEEEcCCCCC---HHHHHHHHHHHHCCCEEEEEeCC
Confidence 345788775544322 346777888888897655 6663
No 433
>PRK06444 prephenate dehydrogenase; Provisional
Probab=21.01 E-value=1.6e+02 Score=27.15 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHH
Q 013195 75 SEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121 (448)
Q Consensus 75 se~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~ 121 (448)
...++..|++.||.+. ..+||+|++ |+-. ..+.++++++
T Consensus 13 G~~~~~~~~~~g~~v~--~~~~DlVil--avPv----~~~~~~i~~~ 51 (197)
T PRK06444 13 GRVLCSILDDNGLGVY--IKKADHAFL--SVPI----DAALNYIESY 51 (197)
T ss_pred HHHHHHHHHhCCCEEE--ECCCCEEEE--eCCH----HHHHHHHHHh
Confidence 3567889999999986 478999999 4422 2344555554
No 434
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=20.93 E-value=8.5e+02 Score=24.36 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=25.2
Q ss_pred cccccccCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCE
Q 013195 306 SFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQ 347 (448)
Q Consensus 306 ~~l~iglES~s~~vLk~m~R-~~t~e~~~~~i~~ir~~~pgi~ 347 (448)
..+|+-+.+| |+| |.+.++..+.++.+.+. |++.
T Consensus 120 ~~V~l~VdtG-------m~R~Gi~~~e~~~~~~~i~~~-~~l~ 154 (367)
T TIGR00492 120 LKVHLKIDTG-------MNRLGVKPDEAALFVQKLRQL-KKFL 154 (367)
T ss_pred eEEEEEeeCC-------CCCCCCChHHHHHHHHHHHhC-CCCC
Confidence 3677888887 688 67888888888877664 5665
No 435
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=20.72 E-value=4.7e+02 Score=24.85 Aligned_cols=64 Identities=11% Similarity=0.153 Sum_probs=38.3
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEE
Q 013195 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVV 130 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVv 130 (448)
+..+...|+.++..+.+.+...+.+. ..++|+++++.+............+++.+++.+.+|++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~i~~ 163 (289)
T cd01164 100 ETEINEPGPEISEEELEALLEKLKAL-------LKKGDIVVLSGSLPPGVPADFYAELVRLAREKGARVIL 163 (289)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-------cCCCCEEEEeCCCCCCcCHHHHHHHHHHHHHcCCeEEE
Confidence 34445568877766666554444321 25699999976654322233455667777777777764
No 436
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=20.70 E-value=5.2e+02 Score=25.19 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEecCCCCCCC-C-CC----CCHHHHHHHHHHhCCCCCcceEEEeecCCcC
Q 013195 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-D-IG----VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287 (448)
Q Consensus 222 ~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~-d-~~----~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~ 287 (448)
..+.+.+-+++..+.|++-+.+.++ +..+.. . .. ..+.+.++++.+.. ....+|++ ++|..
T Consensus 43 Nl~~l~~~L~~n~~~~I~~yRisS~-liP~ashp~~~~~~~~~~~~~l~~iG~~~---~~~~iRls-~HP~q 109 (275)
T PF03851_consen 43 NLEDLLRILEYNIAHGIRFYRISSD-LIPLASHPEVGWDWEEEFAEELAEIGDLA---KENGIRLS-MHPDQ 109 (275)
T ss_dssp HHHHHHHHHHHHHHTT--EEE--TT-SSTTTTSTT--S-HHHHHHHHHHHHHHHH---HHTT-EEE-E---T
T ss_pred HHHHHHHHHHHHHHcCCCEEecCcc-cCCCCCCcccccchHHHHHHHHHHHHHHH---HHcCCeEE-ecCCc
Confidence 4566777778888889988888774 443322 1 11 13445555554432 23457776 46654
No 437
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=20.62 E-value=7.2e+02 Score=23.39 Aligned_cols=139 Identities=14% Similarity=0.208 Sum_probs=75.9
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (448)
-+.+...+-+|++.+.+.|+..+.+=--| +.|=... .-=+..++++.+... ....+.+...+|.. .++.+.
T Consensus 11 LsaD~~~l~~el~~~~~agad~iH~DVMD-ghFVPNi-TfGp~~v~~l~~~t~--~p~DvHLMV~~p~~---~i~~fa-- 81 (220)
T COG0036 11 LSADFARLGEELKALEAAGADLIHIDVMD-GHFVPNI-TFGPPVVKALRKITD--LPLDVHLMVENPDR---YIEAFA-- 81 (220)
T ss_pred hhCCHhHHHHHHHHHHHcCCCEEEEeccC-CCcCCCc-ccCHHHHHHHhhcCC--CceEEEEecCCHHH---HHHHHH--
Confidence 34566788899999999999887762111 1111111 011567777776433 23455554345532 222233
Q ss_pred HhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCe
Q 013195 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQ 378 (448)
Q Consensus 299 ~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~ 378 (448)
+.+ +.++.+=.|+ ++ ...++++.+|+. |+....-+= |+-..+.++.- +.++ |.
T Consensus 82 -~ag--ad~It~H~E~-~~-------------~~~r~i~~Ik~~--G~kaGv~ln---P~Tp~~~i~~~---l~~v--D~ 134 (220)
T COG0036 82 -KAG--ADIITFHAEA-TE-------------HIHRTIQLIKEL--GVKAGLVLN---PATPLEALEPV---LDDV--DL 134 (220)
T ss_pred -HhC--CCEEEEEecc-Cc-------------CHHHHHHHHHHc--CCeEEEEEC---CCCCHHHHHHH---HhhC--CE
Confidence 222 4567676773 22 467789999998 776643332 54444443333 3332 33
Q ss_pred EEEEeceeCCCCcccCC
Q 013195 379 VHISQFYPRPGTPAARM 395 (448)
Q Consensus 379 v~i~~~~p~pGT~~~~~ 395 (448)
+..+|..||---.++
T Consensus 135 --VllMsVnPGfgGQ~F 149 (220)
T COG0036 135 --VLLMSVNPGFGGQKF 149 (220)
T ss_pred --EEEEeECCCCccccc
Confidence 456777888655433
No 438
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=20.58 E-value=4.1e+02 Score=20.56 Aligned_cols=90 Identities=11% Similarity=0.120 Sum_probs=45.4
Q ss_pred ChhHHHHHHHHHHhCCC-eeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccccc
Q 013195 71 NQSDSEYMAGQLSAFGY-ALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGS 138 (448)
Q Consensus 71 N~~dse~~~~~L~~~G~-~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~ 138 (448)
+..-.+.+...|...|| ++... ....|+++++...-.... ..+.+.+++.. .+.++|+-+-.....
T Consensus 7 ~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~-~~~~~~i~~~~-~~~~ii~~t~~~~~~ 84 (112)
T PF00072_consen 7 DPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDG-LELLEQIRQIN-PSIPIIVVTDEDDSD 84 (112)
T ss_dssp SHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBH-HHHHHHHHHHT-TTSEEEEEESSTSHH
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeeccccc-ccccccccccc-ccccEEEecCCCCHH
Confidence 44556677777887888 44321 355899999754443332 23333344332 345555433222211
Q ss_pred h-h-hhcCCcc-EEEcCCchhHHHHHH
Q 013195 139 R-D-LKELEGV-SIVGVQQIDRVVEVV 162 (448)
Q Consensus 139 ~-e-~~~~~~d-~vvg~~~~~~i~~~l 162 (448)
. . .....++ ++..+-....+.+.|
T Consensus 85 ~~~~~~~~g~~~~l~kp~~~~~l~~~i 111 (112)
T PF00072_consen 85 EVQEALRAGADDYLSKPFSPEELRAAI 111 (112)
T ss_dssp HHHHHHHTTESEEEESSSSHHHHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHHhh
Confidence 1 1 1233444 566665655555544
No 439
>PRK14847 hypothetical protein; Provisional
Probab=20.58 E-value=8.7e+02 Score=24.37 Aligned_cols=150 Identities=8% Similarity=-0.046 Sum_probs=74.2
Q ss_pred ceeeCccCC---CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecC
Q 013195 208 YCKTKHARG---HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284 (448)
Q Consensus 208 FC~~~~~rg---~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~ 284 (448)
+|.+..--| .-.+.++++=++-++.|.+.|+.+|...- .+-+.+ -.+.+++|.+........ ++....
T Consensus 35 ~~DTTLRDGeQ~pGv~fs~eeKl~IA~~L~~lGVd~IEvG~---Pa~s~~----e~e~ir~I~~~~~~~~~~--~i~~~~ 105 (333)
T PRK14847 35 WMSTDLRDGNQALIEPMDGARKLRLFEQLVAVGLKEIEVAF---PSASQT----DFDFVRKLIDERRIPDDV--TIEALT 105 (333)
T ss_pred eecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEeeC---CCCCHH----HHHHHHHHHHhCCCCCCc--EEEEEe
Confidence 555543224 24578899889999999999999998732 222221 256777776531000112 232222
Q ss_pred CcChhHHHHHHHHHHhCCCcccccccccCCCCHHHH-HhcCCC--CCHHHHHHHHHHHHHhCCCCEE---EEEEEEeCCC
Q 013195 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQI---ATDIICGFPG 358 (448)
Q Consensus 285 p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vL-k~m~R~--~t~e~~~~~i~~ir~~~pgi~i---~~~~IvG~Pg 358 (448)
+.. .+.++.-.+.....+ ...+|+.+-+ |+--+ ..+++. .-.+...++++.+++. +... ...+-+|.-.
T Consensus 106 r~~-~~dId~a~e~~~~~~-~~~Vhi~~p~-Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~--~~~~~g~~~~V~~~~ED 180 (333)
T PRK14847 106 QSR-PDLIARTFEALAGSP-RAIVHLYNPI-APQWRRIVFGMSRAEIKEIALAGTRQIRAL--ADANPGTQWIYEYSPET 180 (333)
T ss_pred cCc-HHHHHHHHHHhCCCC-CCEEEEEecC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--ccccCCCceEEEEeeec
Confidence 211 111111222222211 2457777644 55444 345543 3445566777788887 4311 1245666544
Q ss_pred CCHHHHHHHHHHH
Q 013195 359 ETDEDFNQTVNLI 371 (448)
Q Consensus 359 ET~ed~~~tl~~i 371 (448)
-|..|..-.++++
T Consensus 181 asRad~dfL~~~~ 193 (333)
T PRK14847 181 FSLAELDFAREVC 193 (333)
T ss_pred CCCCCHHHHHHHH
Confidence 4433333333333
No 440
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.49 E-value=7.2e+02 Score=23.34 Aligned_cols=134 Identities=9% Similarity=0.101 Sum_probs=71.1
Q ss_pred HHHHHHHHH-CCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcc
Q 013195 227 VGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 305 (448)
Q Consensus 227 v~ei~~l~~-~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~ 305 (448)
++-++.+.+ .|+++++++|-|-..-+. ..-.+++++|.+... ..+.++ ---. .++++.+++..+ +
T Consensus 34 ~~~a~~~~~~~Ga~~l~ivDLd~a~~~~---~~n~~~I~~i~~~~~----~pi~vG-GGIr----s~e~v~~~l~~G--a 99 (234)
T PRK13587 34 EESIAYYSQFECVNRIHIVDLIGAKAQH---AREFDYIKSLRRLTT----KDIEVG-GGIR----TKSQIMDYFAAG--I 99 (234)
T ss_pred HHHHHHHHhccCCCEEEEEECcccccCC---cchHHHHHHHHhhcC----CeEEEc-CCcC----CHHHHHHHHHCC--C
Confidence 335555666 599999999876543333 244788999987532 234443 1111 123344555443 5
Q ss_pred cccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC-CEEEEEEEEe---CCC---CCHHHHHHHHHHHHhcCCCe
Q 013195 306 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG-MQIATDIICG---FPG---ETDEDFNQTVNLIKEYKFPQ 378 (448)
Q Consensus 306 ~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pg-i~i~~~~IvG---~Pg---ET~ed~~~tl~~i~~l~~~~ 378 (448)
..+-+|-++..+ .+.++.+.+.||+ +.++.|.-=| ..| .+.-+..+.++.+.++++..
T Consensus 100 ~kvvigt~a~~~---------------~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ 164 (234)
T PRK13587 100 NYCIVGTKGIQD---------------TDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGG 164 (234)
T ss_pred CEEEECchHhcC---------------HHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCE
Confidence 677777666532 2233334444543 6677776433 222 23344455666667777654
Q ss_pred EEEEeceeCCCC
Q 013195 379 VHISQFYPRPGT 390 (448)
Q Consensus 379 v~i~~~~p~pGT 390 (448)
+-+ .-.-+.||
T Consensus 165 ii~-tdi~~dGt 175 (234)
T PRK13587 165 IIY-TDIAKDGK 175 (234)
T ss_pred EEE-ecccCcCC
Confidence 432 22334565
No 441
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=20.28 E-value=1e+03 Score=25.08 Aligned_cols=123 Identities=11% Similarity=0.113 Sum_probs=67.9
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHh
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (448)
.+++.+++-++.+.+.|+..|.|.| ..+ .-.+....+|++++.+.++ ..+.+.+=+-..+. +....+.+.
T Consensus 150 ~t~e~~~~~a~~l~~~Gad~I~i~D-t~G---~l~P~~v~~Lv~~lk~~~~----vpI~~H~Hnt~GlA--~AN~laAie 219 (467)
T PRK14041 150 HTLEYYLEFARELVDMGVDSICIKD-MAG---LLTPKRAYELVKALKKKFG----VPVEVHSHCTTGLA--SLAYLAAVE 219 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC-ccC---CcCHHHHHHHHHHHHHhcC----CceEEEecCCCCcH--HHHHHHHHH
Confidence 3689999999999999999999866 232 2223467889999887653 23444321111111 111222333
Q ss_pred CCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 013195 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 301 ~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l 374 (448)
.+ +..++..+- -|..+.+.-....++..++.. |... |+ +.+.+.+..++++++
T Consensus 220 aG--ad~vD~sv~--------~~g~gagN~atE~lv~~L~~~--g~~t------gi---Dl~~L~~~~~~~~~v 272 (467)
T PRK14041 220 AG--ADMFDTAIS--------PFSMGTSQPPFESMYYAFREN--GKET------DF---DRKALKFLVEYFTKV 272 (467)
T ss_pred hC--CCEEEeecc--------ccCCCCCChhHHHHHHHHHhc--CCCC------Cc---CHHHHHHHHHHHHHH
Confidence 32 556665554 355554444555556666554 4321 22 355555555555555
No 442
>COG4252 Predicted transmembrane sensor domain [Signal transduction mechanisms]
Probab=20.25 E-value=6.2e+02 Score=26.13 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=38.8
Q ss_pred CCCHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCC-EEEEEEEEeCCCC
Q 013195 314 SGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGM-QIATDIICGFPGE 359 (448)
Q Consensus 314 S~s~~vLk~m~R-~~t~e~~~~~i~~ir~~~pgi-~i~~~~IvG~PgE 359 (448)
..|++-++.+++ ......+.+.+++++++ +. .|..|++..+|.+
T Consensus 66 ~IDe~dl~~~g~wp~pr~~~A~Ll~kL~a~--qp~aIgLDi~r~~P~~ 111 (400)
T COG4252 66 AIDEQDLESLGQWPWPRAALARLLDKLAAA--QPRAIGLDIYRDLPSS 111 (400)
T ss_pred EecHHHHHhcCCCCCCHHHHHHHHHHHHhc--CCcEEEEEEeecCCCC
Confidence 458888999998 68899999999999999 63 7899999999986
No 443
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=20.22 E-value=1.4e+02 Score=25.49 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=20.5
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-EEc
Q 013195 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAG 132 (448)
Q Consensus 94 ~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vV-vgG 132 (448)
.+-|++++=|.+=+++. +.+.++.+|++|.+|| ++|
T Consensus 102 ~~gDvli~iS~SG~s~~---vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 102 RPGDVLIVISNSGNSPN---VIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp -TT-EEEEEESSS-SHH---HHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCEEEEECCCCCCHH---HHHHHHHHHHCCCEEEEEeC
Confidence 44577777666655543 5566777888887655 554
No 444
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=20.12 E-value=7e+02 Score=23.05 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=38.2
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEe
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~ 281 (448)
.+++.+.+-++.+.+.|+..|.|.| ..+.. .+..+.++++.+.+.++ . ..+.+.
T Consensus 134 ~~~~~~~~~~~~~~~~g~~~i~l~D-t~G~~---~P~~v~~lv~~~~~~~~--~-~~l~~H 187 (237)
T PF00682_consen 134 TDPEELLELAEALAEAGADIIYLAD-TVGIM---TPEDVAELVRALREALP--D-IPLGFH 187 (237)
T ss_dssp SSHHHHHHHHHHHHHHT-SEEEEEE-TTS-S----HHHHHHHHHHHHHHST--T-SEEEEE
T ss_pred ccHHHHHHHHHHHHHcCCeEEEeeC-ccCCc---CHHHHHHHHHHHHHhcc--C-CeEEEE
Confidence 4788999999999989999999977 33332 23467899999998875 2 455554
No 445
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=20.10 E-value=2.2e+02 Score=26.50 Aligned_cols=83 Identities=18% Similarity=0.196 Sum_probs=50.9
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHH--HhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHH
Q 013195 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL--SAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 371 (448)
Q Consensus 294 el~~l~~~~~~~~~l~iglES~s~~vL--k~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i 371 (448)
+..+..+..+.-..+|+|+|..+..-+ ..+.-+.+.+++.+.++++.+.+|+..--.+-|=+--.++.+.+...++.+
T Consensus 36 ~~a~~a~~~G~EvllhlPMep~~~~~~gp~~L~~~~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l 115 (213)
T PF04748_consen 36 EWAERARAAGHEVLLHLPMEPKGYKDPGPGALLTGMSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVL 115 (213)
T ss_dssp HHHHHHHHCT-EEEEEEEE--TTTT---TT-B-TTS-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEeCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHH
Confidence 345555444445689999999984211 222334688999999999999999853333333333368888899999999
Q ss_pred HhcCC
Q 013195 372 KEYKF 376 (448)
Q Consensus 372 ~~l~~ 376 (448)
++.++
T Consensus 116 ~~~gl 120 (213)
T PF04748_consen 116 KERGL 120 (213)
T ss_dssp HHTT-
T ss_pred HHcCC
Confidence 98875
No 446
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=20.06 E-value=68 Score=30.18 Aligned_cols=74 Identities=15% Similarity=0.219 Sum_probs=47.5
Q ss_pred CCceEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecc--------cccchHHHHHHHHHHHhcCCCCE
Q 013195 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT--------VKSPSQSAMDTLIAKCKSAKKPL 128 (448)
Q Consensus 57 ~~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intct--------v~~~a~~~~~~~i~~~~~~~~~v 128 (448)
|.+++.+..- .-..++......|.+.|++++- |++.|--.||--- +++.+.+....++++++.+|+..
T Consensus 116 g~kkvgLLgT---~~Tm~~~fY~~~l~~~gievvv-Pdd~~q~~v~~iIy~El~~G~~~~~sr~~~~~ii~~l~~~Gae~ 191 (230)
T COG1794 116 GAKKVGLLGT---RFTMEQGFYRKRLEEKGIEVVV-PDDDEQAEVNRIIYEELCQGIVKDASRELYLAVIERLAERGAEG 191 (230)
T ss_pred CCceeEEeec---cchHHhHHHHHHHHHCCceEec-CCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHcCCCE
Confidence 3456655432 2245667788999999988764 3333443333222 22334556678889999899999
Q ss_pred EEEccc
Q 013195 129 VVAGCV 134 (448)
Q Consensus 129 VvgGc~ 134 (448)
|+-||-
T Consensus 192 vIlGCT 197 (230)
T COG1794 192 VILGCT 197 (230)
T ss_pred EEEecc
Confidence 999994
Done!