Query 013195
Match_columns 448
No_of_seqs 466 out of 2498
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 05:59:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qgq_A Protein TM_1862; alpha- 100.0 7.7E-47 2.6E-51 372.0 28.4 251 191-448 3-258 (304)
2 1olt_A Oxygen-independent copr 99.9 2.5E-25 8.7E-30 230.3 17.3 214 191-415 52-278 (457)
3 3t7v_A Methylornithine synthas 99.9 2.1E-23 7.2E-28 208.7 18.6 195 193-402 62-257 (350)
4 3iix_A Biotin synthetase, puta 99.9 1.8E-22 6.2E-27 201.6 21.3 199 193-408 54-254 (348)
5 1r30_A Biotin synthase; SAM ra 99.9 4.7E-21 1.6E-25 193.0 23.0 205 192-414 65-277 (369)
6 1tv8_A MOAA, molybdenum cofact 99.7 2.8E-16 9.6E-21 156.2 23.6 199 192-408 14-221 (340)
7 3c8f_A Pyruvate formate-lyase 99.6 1.2E-14 4.2E-19 136.7 18.4 177 195-391 22-208 (245)
8 2yx0_A Radical SAM enzyme; pre 99.6 2.5E-14 8.4E-19 142.4 18.8 196 196-410 74-302 (342)
9 2z2u_A UPF0026 protein MJ0257; 99.4 1.3E-12 4.6E-17 127.9 13.4 176 192-392 51-260 (311)
10 2a5h_A L-lysine 2,3-aminomutas 99.3 8E-11 2.7E-15 119.9 20.5 182 190-394 113-302 (416)
11 3rfa_A Ribosomal RNA large sub 99.2 2.1E-10 7.3E-15 115.5 15.8 184 191-392 114-319 (404)
12 4fhd_A Spore photoproduct lyas 97.9 4.9E-05 1.7E-09 75.2 10.7 164 195-373 110-282 (368)
13 3can_A Pyruvate-formate lyase- 97.3 0.0041 1.4E-07 55.1 13.2 132 239-391 5-141 (182)
14 2yxb_A Coenzyme B12-dependent 97.2 0.0036 1.2E-07 54.7 12.2 106 58-165 18-142 (161)
15 1ccw_A Protein (glutamate muta 95.8 0.041 1.4E-06 46.5 9.0 94 59-154 4-121 (137)
16 1req_A Methylmalonyl-COA mutas 95.1 0.1 3.4E-06 55.9 11.0 95 58-154 596-708 (727)
17 2xij_A Methylmalonyl-COA mutas 94.9 0.18 6.3E-06 54.1 12.2 94 58-153 604-715 (762)
18 1y80_A Predicted cobalamin bin 93.9 0.23 7.9E-06 44.8 9.2 89 58-150 88-195 (210)
19 1ydn_A Hydroxymethylglutaryl-C 93.6 0.99 3.4E-05 42.9 13.6 167 219-412 21-195 (295)
20 2i2x_B MTAC, methyltransferase 93.2 0.76 2.6E-05 42.9 11.6 103 58-166 123-242 (258)
21 1xrs_B D-lysine 5,6-aminomutas 93.1 0.51 1.8E-05 44.2 10.1 94 58-154 120-243 (262)
22 2cw6_A Hydroxymethylglutaryl-C 92.5 3.2 0.00011 39.5 15.2 167 219-414 22-198 (298)
23 3kp1_A D-ornithine aminomutase 90.3 0.65 2.2E-05 48.5 8.0 93 59-154 603-720 (763)
24 2ftp_A Hydroxymethylglutaryl-C 89.9 6.2 0.00021 37.5 14.4 145 219-382 25-179 (302)
25 1req_B Methylmalonyl-COA mutas 89.5 0.54 1.8E-05 49.6 6.8 93 58-154 509-620 (637)
26 3ezx_A MMCP 1, monomethylamine 89.4 1.2 4.1E-05 40.4 8.4 77 58-136 92-188 (215)
27 1ydo_A HMG-COA lyase; TIM-barr 87.1 9.1 0.00031 36.5 13.4 145 219-382 23-177 (307)
28 3ewb_X 2-isopropylmalate synth 85.8 6.8 0.00023 37.1 11.6 145 219-381 22-169 (293)
29 3bul_A Methionine synthase; tr 85.4 2.7 9.2E-05 43.9 9.2 78 58-137 98-191 (579)
30 1eiw_A Hypothetical protein MT 84.4 11 0.00039 30.1 10.6 99 62-165 7-107 (111)
31 1nvm_A HOA, 4-hydroxy-2-oxoval 82.4 9.9 0.00034 36.8 11.5 162 219-414 25-191 (345)
32 3ble_A Citramalate synthase fr 81.3 18 0.00063 34.8 12.8 143 219-381 36-188 (337)
33 3l5o_A Uncharacterized protein 79.7 1 3.5E-05 42.3 3.1 65 94-162 185-251 (270)
34 3rmj_A 2-isopropylmalate synth 77.8 13 0.00044 36.4 10.6 145 219-381 29-176 (370)
35 2h1q_A Hypothetical protein; Z 77.3 2.1 7.3E-05 40.2 4.5 65 94-162 185-251 (270)
36 3eeg_A 2-isopropylmalate synth 74.9 13 0.00046 35.6 9.6 144 219-380 23-169 (325)
37 2yci_X 5-methyltetrahydrofolat 72.3 14 0.00049 34.4 8.9 141 219-375 29-193 (271)
38 3ivs_A Homocitrate synthase, m 71.0 41 0.0014 33.5 12.3 142 218-381 55-199 (423)
39 3npg_A Uncharacterized DUF364 70.2 3.7 0.00013 38.0 4.2 66 94-163 163-231 (249)
40 1aj0_A DHPS, dihydropteroate s 69.4 24 0.00081 33.2 9.7 139 218-374 32-207 (282)
41 3fst_A 5,10-methylenetetrahydr 62.6 61 0.0021 30.6 11.2 124 220-367 93-223 (304)
42 2nx9_A Oxaloacetate decarboxyl 62.3 96 0.0033 31.2 13.2 136 220-381 26-177 (464)
43 1rqb_A Transcarboxylase 5S sub 62.3 1E+02 0.0035 31.7 13.5 140 220-381 43-194 (539)
44 3inp_A D-ribulose-phosphate 3- 61.7 96 0.0033 28.3 13.2 133 218-392 34-171 (246)
45 2ztj_A Homocitrate synthase; ( 61.6 1.1E+02 0.0039 29.7 13.4 140 219-381 20-163 (382)
46 1tx2_A DHPS, dihydropteroate s 60.5 25 0.00085 33.3 8.0 141 219-374 58-226 (297)
47 3eod_A Protein HNR; response r 55.4 63 0.0022 24.9 8.8 102 59-168 8-126 (130)
48 1eye_A DHPS 1, dihydropteroate 53.8 64 0.0022 30.1 9.5 138 219-374 24-199 (280)
49 3lte_A Response regulator; str 53.6 66 0.0023 24.8 8.6 103 59-169 7-126 (132)
50 2qxy_A Response regulator; reg 52.6 81 0.0028 24.6 9.4 93 70-168 12-121 (142)
51 3kto_A Response regulator rece 51.4 74 0.0025 24.8 8.6 104 59-168 7-126 (136)
52 3rht_A (gatase1)-like protein; 50.9 23 0.00078 32.8 5.8 76 58-136 4-91 (259)
53 3i9v_6 NADH-quinone oxidoreduc 50.4 2.6 9E-05 36.9 -0.7 73 60-136 35-114 (181)
54 3f6c_A Positive transcription 49.2 80 0.0027 24.4 8.4 96 70-169 9-121 (134)
55 2y5s_A DHPS, dihydropteroate s 47.6 1E+02 0.0036 28.9 10.0 142 219-375 41-217 (294)
56 2dqw_A Dihydropteroate synthas 45.9 64 0.0022 30.4 8.2 138 219-374 47-219 (294)
57 2rdm_A Response regulator rece 44.5 1E+02 0.0035 23.5 11.1 96 70-169 13-124 (132)
58 3snk_A Response regulator CHEY 44.4 67 0.0023 25.0 7.2 103 58-168 14-133 (135)
59 3hdv_A Response regulator; PSI 44.2 1.1E+02 0.0037 23.6 9.0 105 57-169 6-128 (136)
60 1jeo_A MJ1247, hypothetical pr 42.4 80 0.0027 26.5 7.8 71 59-134 41-119 (180)
61 3ovp_A Ribulose-phosphate 3-ep 42.4 37 0.0013 30.7 5.7 133 218-392 11-149 (228)
62 4dad_A Putative pilus assembly 41.9 1.2E+02 0.004 23.9 8.5 103 58-168 20-141 (146)
63 3apt_A Methylenetetrahydrofola 41.2 67 0.0023 30.4 7.6 51 219-269 81-137 (310)
64 1m3s_A Hypothetical protein YC 39.9 78 0.0027 26.8 7.4 70 59-133 38-115 (186)
65 3noy_A 4-hydroxy-3-methylbut-2 39.8 1.2E+02 0.0042 29.2 9.1 135 220-373 42-201 (366)
66 3rr1_A GALD, putative D-galact 39.4 1.5E+02 0.0051 29.0 10.2 58 221-281 124-184 (405)
67 2vp8_A Dihydropteroate synthas 38.9 41 0.0014 32.1 5.7 140 219-374 60-239 (318)
68 3gt7_A Sensor protein; structu 38.7 1.5E+02 0.0051 23.6 9.0 102 59-168 8-127 (154)
69 3jte_A Response regulator rece 38.6 1.4E+02 0.0047 23.2 9.3 94 70-168 11-123 (143)
70 2nly_A BH1492 protein, diverge 38.2 1.8E+02 0.0061 26.5 9.7 135 276-415 28-182 (245)
71 3sho_A Transcriptional regulat 37.5 99 0.0034 26.1 7.7 70 59-133 40-123 (187)
72 3lua_A Response regulator rece 37.5 1.4E+02 0.0049 23.1 10.2 104 59-169 5-128 (140)
73 3lmz_A Putative sugar isomeras 37.5 2E+02 0.0069 25.4 10.2 41 328-376 87-127 (257)
74 2j48_A Two-component sensor ki 37.4 81 0.0028 23.3 6.5 89 71-165 10-115 (119)
75 1srr_A SPO0F, sporulation resp 37.3 1.3E+02 0.0045 22.6 8.5 94 71-168 12-121 (124)
76 2qr3_A Two-component system re 37.1 1.4E+02 0.0049 22.9 8.3 97 70-169 11-127 (140)
77 3lpe_B DNA-directed RNA polyme 36.6 8.2 0.00028 27.2 0.3 29 195-224 9-37 (59)
78 3i42_A Response regulator rece 36.1 1.4E+02 0.0048 22.6 8.7 94 70-167 11-121 (127)
79 1qkk_A DCTD, C4-dicarboxylate 35.3 1.7E+02 0.0057 23.2 9.8 93 70-167 11-120 (155)
80 3crn_A Response regulator rece 34.7 1.5E+02 0.0053 22.7 8.5 94 70-167 11-120 (132)
81 1f6y_A 5-methyltetrahydrofolat 34.5 1.4E+02 0.0047 27.5 8.4 141 218-374 19-183 (262)
82 2xvy_A Chelatase, putative; me 34.2 84 0.0029 28.7 7.0 58 328-390 24-93 (269)
83 3vnd_A TSA, tryptophan synthas 34.1 1.5E+02 0.0052 27.3 8.6 115 259-381 5-154 (267)
84 3sbf_A Mandelate racemase / mu 33.3 2.1E+02 0.0072 27.8 10.1 96 221-323 132-247 (401)
85 1dbw_A Transcriptional regulat 33.2 1.6E+02 0.0054 22.3 9.9 93 71-167 12-120 (126)
86 1f07_A Coenzyme F420-dependent 33.1 2.8E+02 0.0095 25.6 10.7 105 221-342 11-124 (321)
87 3hzh_A Chemotaxis response reg 32.7 1.9E+02 0.0065 23.1 9.7 99 59-165 37-154 (157)
88 3mcm_A 2-amino-4-hydroxy-6-hyd 32.6 1.7E+02 0.0058 29.1 9.2 65 221-286 209-280 (442)
89 1z69_A COG2141, coenzyme F420- 32.1 2.8E+02 0.0094 25.7 10.5 106 221-343 11-125 (327)
90 4e38_A Keto-hydroxyglutarate-a 31.8 2.8E+02 0.0097 24.9 11.5 45 218-271 40-84 (232)
91 3a10_A Response regulator; pho 31.8 1.6E+02 0.0053 21.8 10.6 89 71-164 10-113 (116)
92 1vim_A Hypothetical protein AF 31.7 97 0.0033 26.8 6.7 70 59-133 48-125 (200)
93 3grc_A Sensor protein, kinase; 31.6 1.4E+02 0.0046 23.2 7.2 102 59-168 7-127 (140)
94 4f54_A Uncharacterized protein 31.5 37 0.0013 30.0 3.7 25 77-101 64-88 (197)
95 4e5v_A Putative THUA-like prot 31.4 2.1E+02 0.0071 26.5 9.2 69 59-129 5-90 (281)
96 2fz5_A Flavodoxin; alpha/beta 30.4 38 0.0013 26.9 3.5 60 76-135 18-90 (137)
97 2lpm_A Two-component response 30.3 47 0.0016 26.7 3.9 82 76-163 22-117 (123)
98 2xhz_A KDSD, YRBH, arabinose 5 29.8 1.3E+02 0.0046 25.1 7.2 69 60-133 51-132 (183)
99 5nul_A Flavodoxin; electron tr 29.8 48 0.0016 26.6 4.0 61 76-136 17-90 (138)
100 2rjn_A Response regulator rece 29.7 2.1E+02 0.007 22.6 9.1 101 59-167 8-125 (154)
101 1tmy_A CHEY protein, TMY; chem 29.6 1.7E+02 0.0059 21.7 9.0 91 71-165 11-118 (120)
102 1x92_A APC5045, phosphoheptose 29.6 75 0.0026 27.3 5.5 70 59-133 46-149 (199)
103 3e49_A Uncharacterized protein 29.6 3.4E+02 0.012 25.5 10.4 52 218-270 26-79 (311)
104 1mxs_A KDPG aldolase; 2-keto-3 29.6 2.7E+02 0.0093 24.7 9.4 44 219-271 33-76 (225)
105 2plj_A Lysine/ornithine decarb 29.4 2.5E+02 0.0084 27.4 9.9 114 227-366 109-227 (419)
106 2qgh_A Diaminopimelate decarbo 29.3 2.4E+02 0.008 27.6 9.8 45 323-368 174-220 (425)
107 2yva_A DNAA initiator-associat 29.2 1.2E+02 0.004 25.9 6.7 70 59-133 42-145 (196)
108 3tr9_A Dihydropteroate synthas 29.2 3.7E+02 0.013 25.4 14.9 137 219-372 44-222 (314)
109 1vzw_A Phosphoribosyl isomeras 29.1 2.4E+02 0.0083 24.8 9.2 132 225-386 33-170 (244)
110 2b4a_A BH3024; flavodoxin-like 29.0 2E+02 0.0067 22.1 8.9 102 58-168 15-131 (138)
111 2q5c_A NTRC family transcripti 28.9 69 0.0024 28.0 5.1 87 59-166 95-181 (196)
112 2ze3_A DFA0005; organic waste 28.7 3.3E+02 0.011 25.0 10.1 82 327-415 59-140 (275)
113 3cg0_A Response regulator rece 28.4 2E+02 0.0068 22.0 7.7 105 58-168 9-128 (140)
114 4dgh_A Sulfate permease family 27.9 2.2E+02 0.0075 22.3 9.1 73 60-139 20-95 (130)
115 3cg4_A Response regulator rece 27.7 2.1E+02 0.0071 22.0 9.2 101 58-166 7-125 (142)
116 3hv2_A Response regulator/HD d 27.4 2.3E+02 0.0078 22.3 10.1 104 55-167 11-132 (153)
117 4hcj_A THIJ/PFPI domain protei 27.2 1.7E+02 0.0058 24.9 7.3 37 54-90 3-39 (177)
118 1h7n_A 5-aminolaevulinic acid 27.1 1.6E+02 0.0054 28.1 7.4 76 192-271 41-124 (342)
119 3no5_A Uncharacterized protein 27.0 3.7E+02 0.013 24.7 12.4 51 218-270 24-76 (275)
120 3s5p_A Ribose 5-phosphate isom 26.9 52 0.0018 28.2 3.7 34 56-92 19-53 (166)
121 2xwp_A Sirohydrochlorin cobalt 26.7 3.5E+02 0.012 24.3 10.0 145 221-392 60-208 (264)
122 1ydn_A Hydroxymethylglutaryl-C 26.6 3.7E+02 0.013 24.6 18.1 62 193-271 137-198 (295)
123 4gud_A Imidazole glycerol phos 26.6 39 0.0013 29.6 3.1 71 58-135 2-81 (211)
124 3cfy_A Putative LUXO repressor 26.5 1.4E+02 0.0046 23.3 6.3 93 71-167 13-121 (137)
125 3h5i_A Response regulator/sens 26.4 2.2E+02 0.0077 21.9 11.8 95 70-166 13-122 (140)
126 3iwt_A 178AA long hypothetical 26.2 73 0.0025 27.1 4.7 34 57-90 14-57 (178)
127 3r8r_A Transaldolase; pentose 26.2 2.2E+02 0.0074 25.3 7.9 101 227-356 10-113 (212)
128 1wbh_A KHG/KDPG aldolase; lyas 25.9 3.4E+02 0.012 23.8 10.4 45 218-271 22-66 (214)
129 3oq0_A DBF4, protein DNA52; DD 25.5 80 0.0027 26.5 4.5 71 59-129 25-103 (151)
130 1oao_C CODH, carbon monoxide d 24.9 40 0.0014 35.4 3.0 52 82-137 141-192 (729)
131 1ezw_A Coenzyme F420-dependent 24.7 3.5E+02 0.012 25.4 9.8 105 221-342 14-141 (349)
132 1yg6_A ATP-dependent CLP prote 24.5 1E+02 0.0035 26.7 5.4 72 63-138 28-99 (193)
133 7odc_A Protein (ornithine deca 24.4 5E+02 0.017 25.3 11.3 116 227-368 92-212 (424)
134 2nva_A Arginine decarboxylase, 24.4 2E+02 0.0068 27.4 8.0 114 227-365 71-188 (372)
135 3t6k_A Response regulator rece 24.0 2.5E+02 0.0085 21.6 9.3 93 71-168 13-124 (136)
136 3eul_A Possible nitrate/nitrit 23.9 2.4E+02 0.0081 22.1 7.4 103 58-169 15-136 (152)
137 1w5q_A Delta-aminolevulinic ac 23.8 1.8E+02 0.0062 27.7 7.1 75 192-271 38-120 (337)
138 3jva_A Dipeptide epimerase; en 23.8 2.9E+02 0.01 26.2 9.1 52 221-281 138-189 (354)
139 1mvo_A PHOP response regulator 23.6 2.4E+02 0.0083 21.4 10.0 95 70-168 11-121 (136)
140 3tj4_A Mandelate racemase; eno 23.6 4E+02 0.014 25.4 10.1 93 220-322 149-242 (372)
141 3f6r_A Flavodoxin; FMN binding 23.6 1.3E+02 0.0043 24.3 5.6 58 76-133 20-93 (148)
142 4e7p_A Response regulator; DNA 23.5 2.7E+02 0.0091 21.8 9.4 105 57-169 19-141 (150)
143 2vef_A Dihydropteroate synthas 23.3 2E+02 0.0068 27.2 7.5 63 219-286 28-96 (314)
144 3hdg_A Uncharacterized protein 23.2 1.2E+02 0.004 23.5 5.2 102 59-168 8-125 (137)
145 2a20_A Regulating synaptic mem 23.1 14 0.00047 25.9 -0.5 17 197-213 19-35 (62)
146 3obk_A Delta-aminolevulinic ac 23.1 2.2E+02 0.0074 27.3 7.5 76 191-271 45-127 (356)
147 3kht_A Response regulator; PSI 23.0 2.6E+02 0.009 21.5 9.2 93 70-166 13-126 (144)
148 3f6p_A Transcriptional regulat 23.0 2.4E+02 0.0082 21.1 9.7 92 71-166 11-117 (120)
149 1pv8_A Delta-aminolevulinic ac 22.9 1.8E+02 0.0063 27.5 6.9 76 192-271 31-113 (330)
150 3cz5_A Two-component response 22.9 2.8E+02 0.0094 21.7 9.4 96 70-169 13-126 (153)
151 1zlp_A PSR132, petal death pro 22.8 1.5E+02 0.0053 28.1 6.6 55 327-383 83-137 (318)
152 3r0u_A Enzyme of enolase super 22.6 4.2E+02 0.014 25.4 10.0 92 221-323 141-234 (379)
153 3etn_A Putative phosphosugar i 22.4 2E+02 0.007 25.1 7.1 70 59-133 60-144 (220)
154 3bg3_A Pyruvate carboxylase, m 22.3 7.1E+02 0.024 26.3 15.6 163 221-414 122-303 (718)
155 4dgf_A Sulfate transporter sul 22.3 1.6E+02 0.0056 23.4 5.9 72 60-138 23-97 (135)
156 2xws_A Sirohydrochlorin cobalt 22.1 1.7E+02 0.0058 23.1 6.0 55 330-392 20-76 (133)
157 2h9a_B CO dehydrogenase/acetyl 21.8 5E+02 0.017 24.3 11.3 141 224-373 74-229 (310)
158 4dwd_A Mandelate racemase/muco 21.6 3.3E+02 0.011 26.4 9.0 23 221-243 138-161 (393)
159 3eqz_A Response regulator; str 21.6 2.6E+02 0.009 21.0 8.2 96 70-169 11-126 (135)
160 3ozy_A Putative mandelate race 21.6 3.8E+02 0.013 25.8 9.5 52 221-281 150-201 (389)
161 3rcy_A Mandelate racemase/muco 21.6 4.4E+02 0.015 25.9 10.0 99 221-323 145-249 (433)
162 1yio_A Response regulatory pro 21.5 3.5E+02 0.012 22.5 9.8 93 71-167 13-121 (208)
163 3n7t_A Macrophage binding prot 21.4 1.1E+02 0.0037 27.9 5.1 39 52-90 3-52 (247)
164 1ys7_A Transcriptional regulat 21.4 3.8E+02 0.013 22.8 9.8 95 70-168 15-125 (233)
165 2y88_A Phosphoribosyl isomeras 21.4 2.9E+02 0.01 24.2 8.1 130 225-385 32-172 (244)
166 2zay_A Response regulator rece 20.9 2.3E+02 0.0079 22.0 6.7 93 70-166 16-126 (147)
167 2xwp_A Sirohydrochlorin cobalt 20.7 1.8E+02 0.0062 26.4 6.5 58 331-391 21-89 (264)
168 1vhc_A Putative KHG/KDPG aldol 20.6 4.4E+02 0.015 23.2 10.9 44 219-271 24-67 (224)
169 2rdx_A Mandelate racemase/muco 20.6 4.8E+02 0.016 24.8 10.0 51 222-281 145-195 (379)
170 2pl1_A Transcriptional regulat 20.5 2.6E+02 0.009 20.6 9.2 91 71-165 9-115 (121)
171 1luc_B Bacterial luciferase; m 20.4 4.4E+02 0.015 24.4 9.5 110 221-342 19-138 (324)
172 3umo_A 6-phosphofructokinase i 20.3 3E+02 0.01 25.0 8.2 64 59-130 102-165 (309)
173 3fxa_A SIS domain protein; str 20.2 1.6E+02 0.0053 25.2 5.7 69 60-133 47-128 (201)
174 3qy7_A Tyrosine-protein phosph 20.2 82 0.0028 28.9 4.0 28 219-246 15-42 (262)
No 1
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=100.00 E-value=7.7e-47 Score=371.97 Aligned_cols=251 Identities=29% Similarity=0.487 Sum_probs=204.8
Q ss_pred CcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC--CCCHHHHHHHHHH
Q 013195 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVA 268 (448)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~--~~~l~~ll~~l~~ 268 (448)
+..++|++++||+++|+||.++..+|+.|++++++|++|++.+.+.|+++|+|+|+|++.||.+. ...+.+|++.+.+
T Consensus 3 ~~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l~~ 82 (304)
T 2qgq_A 3 RPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNS 82 (304)
T ss_dssp CSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHHHT
T ss_pred CEEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999998642 3579999999976
Q ss_pred hCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEE
Q 013195 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (448)
Q Consensus 269 ~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i 348 (448)
.+ +..|+++.+++|..+++++ +..+.+.+++|+++++|+||+|+++|+.|+|+++.+++.++++.+++.+||+.+
T Consensus 83 -~~--gi~~ir~~~~~p~~l~~e~--l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~r~~t~e~~~~~i~~l~~~~~gi~i 157 (304)
T 2qgq_A 83 -LN--GEFWIRVMYLHPDHLTEEI--ISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVL 157 (304)
T ss_dssp -SS--SSCEEEECCCCGGGCCHHH--HHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEE
T ss_pred -cC--CCcEEEEeeeecccCCHHH--HHHHHhCCCCccEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEE
Confidence 33 5668999888998887765 555556666689999999999999999999999999999999999998889999
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHHHHHHHHHh--hchhhcCCC
Q 013195 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEG 425 (448)
Q Consensus 349 ~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l~~~~~~--~~~~~~~~g 425 (448)
.++||+||||||+++|++|++++++++++.+++++|+|+||||+++++ ++|++++++|+++|+++++. .+++++++|
T Consensus 158 ~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~pgT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~g 237 (304)
T 2qgq_A 158 RTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVG 237 (304)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCCCCChhHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999998 99999999999999999984 578899999
Q ss_pred cEEEEEEEEEecCCceEEEeeCC
Q 013195 426 RVERIWITEIAADGIHLVRLEQF 448 (448)
Q Consensus 426 ~~~~vlve~~~~~~~~~~g~~~~ 448 (448)
++++||||+. ++..+.|||..
T Consensus 238 ~~~~vl~e~~--~~~~~~g~~~~ 258 (304)
T 2qgq_A 238 KKLKFLVEGK--EGKFLVGRTWT 258 (304)
T ss_dssp CEEEEEEEEE--ETTEEEEEETT
T ss_pred CEEEEEEEec--CCCEEEEECCC
Confidence 9999999996 23368899863
No 2
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=99.93 E-value=2.5e-25 Score=230.33 Aligned_cols=214 Identities=16% Similarity=0.222 Sum_probs=166.0
Q ss_pred CcEEEEEeCCCCCCCccceeeCccCC---CccccCHHHHHHHHHHHHHC----CCcEEEEEecCCCCCCCCCCCCHHHHH
Q 013195 191 KFVEILPINVGCLGACTYCKTKHARG---HLGSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILL 263 (448)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg---~~rsr~~e~Iv~ei~~l~~~----G~~ei~~~~~~~~~yg~d~~~~l~~ll 263 (448)
+...||.|. +|+++|+||..+...+ ..+.++++.|++|++.+.+. ++..|+|.|++.+.... ..+.+++
T Consensus 52 ~~~lYihIp-fC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgGGtpt~l~~---~~l~~ll 127 (457)
T 1olt_A 52 PLSLYVHIP-FCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNK---AQISRLM 127 (457)
T ss_dssp CEEEEEEEC-EESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSCH---HHHHHHH
T ss_pred ceEEEEEcC-CCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcccCCH---HHHHHHH
Confidence 456788887 5999999999875432 24566789999999987654 35677887744322221 3578899
Q ss_pred HHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q 013195 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343 (448)
Q Consensus 264 ~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~ 343 (448)
+.+.+.++.....++++. ++|..++++. +..+.+ .+ ++++++|+||+++++|+.|+|+++.+++.++++.++++
T Consensus 128 ~~i~~~~~~~~~~eitie-~~p~~l~~e~--l~~L~~-~G-~~rislGvQS~~~~~l~~i~R~~~~~~~~~ai~~~r~~- 201 (457)
T 1olt_A 128 KLLRENFQFNADAEISIE-VDPREIELDV--LDHLRA-EG-FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREI- 201 (457)
T ss_dssp HHHHHHSCEEEEEEEEEE-ECSSSCCTHH--HHHHHH-TT-CCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT-
T ss_pred HHHHHhCCCCCCcEEEEE-EccCcCCHHH--HHHHHH-cC-CCEEEEeeccCCHHHHHHhCCCCCHHHHHHHHHHHHHc-
Confidence 998876432134577885 7999887654 444444 34 68999999999999999999999999999999999999
Q ss_pred CCCE-EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccC-C--C-CCC-HHHHHHHHHHHHHHHH
Q 013195 344 PGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-M--K-KVP-SAVVKKRSRELTSVFE 415 (448)
Q Consensus 344 pgi~-i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~-~--~-~v~-~~~~~~R~~~l~~~~~ 415 (448)
|+. +++|+|+|+||||.+++.+|++++.++++++++++.|+|.|||+++. + + ++| +++..+.+..+.+...
T Consensus 202 -G~~~v~~dlI~GlPget~e~~~~tl~~~~~l~~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~ 278 (457)
T 1olt_A 202 -GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLT 278 (457)
T ss_dssp -TCCSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHH
T ss_pred -CCCcEEEEEEcCCCCCCHHHHHHHHHHHHhcCcCEEEeecCcCCcCchhHhhccccCCCcCHHHHHHHHHHHHHHHH
Confidence 997 99999999999999999999999999999999999999999999875 2 2 344 4444455555555444
No 3
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=99.91 E-value=2.1e-23 Score=208.75 Aligned_cols=195 Identities=14% Similarity=0.184 Sum_probs=156.0
Q ss_pred EEEEEeCCCCCCCccceeeCccCCC-ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCC
Q 013195 193 VEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg~-~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~ 271 (448)
.+.|.+|+||+++|.||.++...+. ...+++++|+++++.+.+.|+++|.|+|++...+..+ ...+.++++.+.+..+
T Consensus 62 ~~~i~~t~~C~~~C~fC~~~~~~~~~~~~ls~eei~~~~~~~~~~G~~~i~l~gGe~p~~~~~-~~~~~~l~~~ik~~~~ 140 (350)
T 3t7v_A 62 NCFIYFSTYCKNQCSFCYYNCRNEINRYRLTMEEIKETCKTLKGAGFHMVDLTMGEDPYYYED-PNRFVELVQIVKEELG 140 (350)
T ss_dssp EEEEEEECCCCCCCTTCTTCTTSCCCCCBCCHHHHHHHHHHHTTSCCSEEEEEECCCHHHHHS-THHHHHHHHHHHHHHC
T ss_pred EEeeecCCCcCCCCCcCCCcCcCCCCceeCCHHHHHHHHHHHHHCCCCEEEEeeCCCCccccC-HHHHHHHHHHHHhhcC
Confidence 4578999999999999998755432 2237999999999999999999999988653333211 1356888888876532
Q ss_pred CCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Q 013195 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351 (448)
Q Consensus 272 ~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~ 351 (448)
..+. +++..++++. +..+.+ .+ +.++.+|+||+++++++.|+++++.+++.++++.+++. |+.+.++
T Consensus 141 ----i~i~---~s~g~~~~e~--l~~L~~-aG-~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~ 207 (350)
T 3t7v_A 141 ----LPIM---ISPGLMDNAT--LLKARE-KG-ANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQ--GYCVEDG 207 (350)
T ss_dssp ----SCEE---EECSSCCHHH--HHHHHH-TT-EEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHH--TCEEEEE
T ss_pred ----ceEE---EeCCCCCHHH--HHHHHH-cC-CCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHc--CCeEccc
Confidence 2232 3454455433 444444 33 67889999999999999999999999999999999999 9999999
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCCCCCHHH
Q 013195 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402 (448)
Q Consensus 352 ~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~~v~~~~ 402 (448)
+|+|+ |||.+++.++++++++++++.+.+++|.|.||||+++.+..+.++
T Consensus 208 ~i~Gl-get~e~~~~~l~~l~~l~~~~v~~~~f~p~~gT~l~~~~~~~~~e 257 (350)
T 3t7v_A 208 ILTGV-GNDIESTILSLRGMSTNDPDMVRVMTFLPQEGTPLEGFRDKSNLS 257 (350)
T ss_dssp EEESS-SCCHHHHHHHHHHHHHTCCSEEEEEECCCCTTSTTTTCCCCCCCC
T ss_pred eEeec-CCCHHHHHHHHHHHHhCCCCEEEecceeeCCCCcCccCCCCChHH
Confidence 99999 999999999999999999999999999999999999887544433
No 4
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.90 E-value=1.8e-22 Score=201.57 Aligned_cols=199 Identities=20% Similarity=0.260 Sum_probs=158.3
Q ss_pred EEEEEeCCCCCCCccceeeCccCCCc--cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhC
Q 013195 193 VEILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg~~--rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~ 270 (448)
.+.|.+|+||+++|.||..+...+.. ...++++|+++++.+.+.|+++|.|+|+....+.. ..+.++++.+.+.
T Consensus 54 ~~~i~~t~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~i~~~~~~g~~~i~~~gGe~p~~~~---~~~~~li~~i~~~- 129 (348)
T 3iix_A 54 RAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGEDPYXMP---DVISDIVKEIKKM- 129 (348)
T ss_dssp EEEEEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHHTTCSEEEEEESCCGGGTT---HHHHHHHHHHHTT-
T ss_pred EEEeEecCCcCCcCccCCCCCCCCCcCceeCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCccH---HHHHHHHHHHHhc-
Confidence 46789999999999999877655432 23699999999999999999999999865333321 3467778777643
Q ss_pred CCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEE
Q 013195 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350 (448)
Q Consensus 271 ~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~ 350 (448)
...+.+ ++..++++. +..+.+. + +..+.+++||.++++++.++++.+.+++.++++.+++. |+.+.+
T Consensus 130 ----~~~i~~---s~g~l~~e~--l~~L~~a-g-~~~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~ 196 (348)
T 3iix_A 130 ----GVAVTL---SLGEWPREY--YEKWKEA-G-ADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKEL--GYETGA 196 (348)
T ss_dssp ----SCEEEE---ECCCCCHHH--HHHHHHH-T-CCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ----CceEEE---ecCCCCHHH--HHHHHHh-C-CCEEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHh--CCeecc
Confidence 123332 333444432 3333332 2 57888999999999999999999999999999999999 999999
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCCCCCHHHHHHHHH
Q 013195 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408 (448)
Q Consensus 351 ~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~ 408 (448)
.+|+|+||||.+++.++++++++++++.+.+++|.|.||||+++.+..+.++..+-..
T Consensus 197 ~~i~G~p~et~e~~~~~~~~l~~l~~~~i~i~~~~p~~gt~l~~~~~~~~~e~~~~~a 254 (348)
T 3iix_A 197 GSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVA 254 (348)
T ss_dssp CBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTSCCCCHHHHHHHHH
T ss_pred ceEEeCCCCCHHHHHHHHHHHHhcCCCEEeeeeeecCCCCCcccCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988776655544443
No 5
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.87 E-value=4.7e-21 Score=193.04 Aligned_cols=205 Identities=16% Similarity=0.192 Sum_probs=158.5
Q ss_pred cEEEEEe-CCCCCCCccceeeCccC--C--CccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC-CCHHHHHHH
Q 013195 192 FVEILPI-NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNA 265 (448)
Q Consensus 192 ~~~~i~i-srGC~~~CsFC~~~~~r--g--~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~-~~l~~ll~~ 265 (448)
....|.+ ++||+++|.||..+... + +++.+++++|+++++.+.+.|++.|.|+|... ++.... ..+.++++.
T Consensus 65 ~~~~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~~~gg~~--~p~~~~~~~l~~ll~~ 142 (369)
T 1r30_A 65 VSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWK--NPHERDMPYLEQMVQG 142 (369)
T ss_dssp EEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHTTCSEEEEEECCS--SCCTTTHHHHHHHHHH
T ss_pred EEEEEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHHHHHHcCCcEEEEEeCCC--CCCcCCHHHHHHHHHH
Confidence 3456776 99999999999987642 2 35668999999999999999999999987421 111111 346777877
Q ss_pred HHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 013195 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345 (448)
Q Consensus 266 l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pg 345 (448)
+.+. +. .+. +++..++++. +..+.+. + +.++++++|| ++++++.++|+++.+++.++++.+++. |
T Consensus 143 ik~~----g~-~i~---~t~G~l~~e~--l~~L~~a-G-vd~v~i~les-~~e~~~~i~~~~~~~~~l~~i~~a~~~--G 207 (369)
T 1r30_A 143 VKAM----GL-EAC---MTLGTLSESQ--AQRLANA-G-LDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDA--G 207 (369)
T ss_dssp HHHT----TS-EEE---EECSSCCHHH--HHHHHHH-C-CCEEECCCBS-CHHHHHHHCCSSCHHHHHHHHHHHHHH--H
T ss_pred HHHc----CC-eEE---EecCCCCHHH--HHHHHHC-C-CCEEeecCcC-CHHHHHHhCCCCCHHHHHHHHHHHHHc--C
Confidence 7653 22 332 3444454432 4444333 3 6899999999 999999999999999999999999999 9
Q ss_pred CEEEEEEEEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHHHHH
Q 013195 346 MQIATDIICGFPGETDEDFNQTVNLIKEYK--FPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414 (448)
Q Consensus 346 i~i~~~~IvG~PgET~ed~~~tl~~i~~l~--~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~ 414 (448)
+.+.+++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||+++.+.++.++..+.....+.+.
T Consensus 208 i~v~~~~I~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~~~~~~~~~~~~~~~~~r~~l 277 (369)
T 1r30_A 208 IKVCSGGIVGL-GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMM 277 (369)
T ss_dssp CEEECCEEECS-SCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHC
T ss_pred CeeeeeeEeeC-CCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 99999999999 999999999999999997 889999999999999999887777766555544444433
No 6
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.74 E-value=2.8e-16 Score=156.24 Aligned_cols=199 Identities=13% Similarity=0.205 Sum_probs=155.6
Q ss_pred cEEEEEeCCCCCCCccceeeCcc-------CCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHH
Q 013195 192 FVEILPINVGCLGACTYCKTKHA-------RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLN 264 (448)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~-------rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~ 264 (448)
....|.++++|+++|.||..+.. .+.....+.+++.+.++.+.+.|++.|.|+|.+.... .++.++++
T Consensus 14 ~~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~~g~~~i~~tGGEPll~-----~~l~~li~ 88 (340)
T 1tv8_A 14 RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMR-----RDLDVLIA 88 (340)
T ss_dssp CEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGGGS-----TTHHHHHH
T ss_pred CeEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCccch-----hhHHHHHH
Confidence 45678999999999999987642 1234567899999999999989999999998665443 35788888
Q ss_pred HHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCC-CHHHHHHHHHHHHHhC
Q 013195 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY-TLSDFRTVVDTLIELV 343 (448)
Q Consensus 265 ~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~-t~e~~~~~i~~ir~~~ 343 (448)
.+.+. . ....+.+. +|...+.+.+ ..+.+. + +..+.++++|.++++++.++++. +.+++.+.++.++++
T Consensus 89 ~~~~~-~--~~~~i~i~-TNG~ll~~~~---~~L~~~-g-~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~- 158 (340)
T 1tv8_A 89 KLNQI-D--GIEDIGLT-TNGLLLKKHG---QKLYDA-G-LRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSI- 158 (340)
T ss_dssp HHTTC-T--TCCEEEEE-ECSTTHHHHH---HHHHHH-T-CCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHT-
T ss_pred HHHhC-C--CCCeEEEE-eCccchHHHH---HHHHHC-C-CCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHC-
Confidence 88653 2 22366664 6776665433 333332 2 56899999999999999998887 999999999999999
Q ss_pred CCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCC-CCCHHHHHHHHH
Q 013195 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408 (448)
Q Consensus 344 pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~-~v~~~~~~~R~~ 408 (448)
|+.+...+++ +||++.+++.++++++.+++++ +.+..|+|.++|+.|... .++.++..+++.
T Consensus 159 -g~~v~i~~vv-~~g~n~~ei~~~~~~~~~~g~~-~~~i~~~p~~~~~~~~~~~~~~~~e~~~~l~ 221 (340)
T 1tv8_A 159 -GLNVKVNVVI-QKGINDDQIIPMLEYFKDKHIE-IRFIEFMDVGNDNGWDFSKVVTKDEMLTMIE 221 (340)
T ss_dssp -TCEEEEEEEE-CTTTTGGGHHHHHHHHHHTTCC-EEEEECCCBCSSSSBCCSSCCCHHHHHHHHH
T ss_pred -CCCEEEEEEE-eCCCCHHHHHHHHHHHHhcCCe-EEEEEeeEcCCCccchhhcCCCHHHHHHHHH
Confidence 8888888777 7999999999999999999986 777889999999887654 677766555544
No 7
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.62 E-value=1.2e-14 Score=136.67 Aligned_cols=177 Identities=15% Similarity=0.162 Sum_probs=129.9
Q ss_pred EEEeCCCCCCCccceeeCccC--CCccccCHHHHHHHHHHHHHC---CCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHh
Q 013195 195 ILPINVGCLGACTYCKTKHAR--GHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (448)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~r--g~~rsr~~e~Iv~ei~~l~~~---G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~ 269 (448)
.+.++.||+++|.||..+... +..+.+++++++++++.+.+. +...|.|+|++...+ .+ .+.++++.+.+.
T Consensus 22 ~~i~t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~GGEP~l~-~~---~l~~l~~~~~~~ 97 (245)
T 3c8f_A 22 FITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQ-AE---FVRDWFRACKKE 97 (245)
T ss_dssp EEEEESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEESCGGGG-HH---HHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCCCCCCchhcccccCccCCHHHHHHHHHHhhhhhcCCCCeEEEECCCcCCC-HH---HHHHHHHHHHHc
Confidence 344677999999999887543 346678999999999887664 478999998665443 11 246777777642
Q ss_pred CCCCCcceEEEeecCCcC--hhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCE
Q 013195 270 LPPDGSTMLRIGMTNPPF--ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (448)
Q Consensus 270 ~~~~~~~~iri~~~~p~~--i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~ 347 (448)
+ ..+.+. ++... ..+. +.++.+. +..+.++++|+++++++.+++ .+.+++.+.++.++++ |+.
T Consensus 98 ----~-~~i~i~-Tng~~~~~~~~---~~~l~~~---~~~v~isld~~~~~~~~~~~~-~~~~~~~~~i~~l~~~--g~~ 162 (245)
T 3c8f_A 98 ----G-IHTCLD-TNGFVRRYDPV---IDELLEV---TDLVMLDLKQMNDEIHQNLVG-VSNHRTLEFAKYLANK--NVK 162 (245)
T ss_dssp ----T-CCEEEE-ECCCCCCCCHH---HHHHHHT---CSEEEEECCCSSHHHHHHHHS-SCSHHHHHHHHHHHHH--TCC
T ss_pred ----C-CcEEEE-eCCCcCcCHHH---HHHHHHh---CCEEEEeCCCCCHHHhhhccC-CCHHHHHHHHHHHHhc--CCE
Confidence 2 245554 34432 2333 3344443 357999999999999999965 4569999999999999 877
Q ss_pred EEEEEEEeCCC--CCHHHHHHHHHHHHhcCC-CeEEEEeceeCCCCc
Q 013195 348 IATDIICGFPG--ETDEDFNQTVNLIKEYKF-PQVHISQFYPRPGTP 391 (448)
Q Consensus 348 i~~~~IvG~Pg--ET~ed~~~tl~~i~~l~~-~~v~i~~~~p~pGT~ 391 (448)
+...+++ .|| ++.+++.++++++.++++ ..+++.+|.|.+++.
T Consensus 163 v~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3c8f_A 163 VWIRYVV-VPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHK 208 (245)
T ss_dssp EEEEEEE-CTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHH
T ss_pred EEEEEee-cCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccChhH
Confidence 7666555 565 678999999999999985 889999999988763
No 8
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.60 E-value=2.5e-14 Score=142.36 Aligned_cols=196 Identities=13% Similarity=0.107 Sum_probs=136.1
Q ss_pred EEeC-CCCCCCccceeeCccC-----CCccccCHHHHHHHHHHHHHC------C--------------CcEEEEE-ecCC
Q 013195 196 LPIN-VGCLGACTYCKTKHAR-----GHLGSYTVESLVGRVRTVIAD------G--------------VKEVWLS-SEDT 248 (448)
Q Consensus 196 i~is-rGC~~~CsFC~~~~~r-----g~~rsr~~e~Iv~ei~~l~~~------G--------------~~ei~~~-~~~~ 248 (448)
+..+ +||+++|.||..+... +..+..++++|++++..+.+. | ++.|.|+ |++.
T Consensus 74 i~~~~~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGEP 153 (342)
T 2yx0_A 74 MTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEP 153 (342)
T ss_dssp EESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCG
T ss_pred EEeChhhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCcc
Confidence 3344 7999999999986432 145678899999998775431 2 4668886 5454
Q ss_pred CCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCC---
Q 013195 249 GAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR--- 325 (448)
Q Consensus 249 ~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R--- 325 (448)
..+ ..+.++++.+.+. + ..+.+. ++... .+. +..+.+.+.....+.+++++.++++++.+++
T Consensus 154 ll~-----~~l~~ll~~~~~~----g-~~i~l~-TNG~~-~e~---l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~ 218 (342)
T 2yx0_A 154 MLY-----PYMGDLVEEFHKR----G-FTTFIV-TNGTI-PER---LEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMI 218 (342)
T ss_dssp GGS-----TTHHHHHHHHHHT----T-CEEEEE-ECSCC-HHH---HHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSS
T ss_pred cch-----hhHHHHHHHHHHC----C-CcEEEE-cCCCc-HHH---HHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCc
Confidence 443 2588999888763 2 355664 45543 222 3444443223578999999999999999887
Q ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCC---CCCCHHH
Q 013195 326 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM---KKVPSAV 402 (448)
Q Consensus 326 ~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~---~~v~~~~ 402 (448)
+++.+++.+.++.+++. |+.+...+++ +||++.+++.++++++++++++++++.+|.|.|+++ ..+ ...+.++
T Consensus 219 ~~~~~~~~~~i~~l~~~--g~~v~i~~~l-~~g~n~~~~~~l~~~l~~~~~~~i~l~~~~~~~~~~-~~l~~~~~~~~e~ 294 (342)
T 2yx0_A 219 PDGWERILRFLELMRDL--PTRTVVRLTL-VKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSR-NRLTINNMPSHQD 294 (342)
T ss_dssp SCHHHHHHHHHHHHTTC--SSEEEEEEEE-CTTTTCCCHHHHHHHHHHHCCSEEEEEECC-------CCCCGGGSCCHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCEEEEEEE-ECCccHHHHHHHHHHHHHcCCCEEEEEeeeecCCCc-ccccccCCCCHHH
Confidence 57899999999999998 8888888888 799998889999999999999999999999877665 223 2344544
Q ss_pred HHHHHHHH
Q 013195 403 VKKRSREL 410 (448)
Q Consensus 403 ~~~R~~~l 410 (448)
..+..+.+
T Consensus 295 ~~~~~~~l 302 (342)
T 2yx0_A 295 IREFAEAL 302 (342)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44443333
No 9
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.41 E-value=1.3e-12 Score=127.92 Aligned_cols=176 Identities=15% Similarity=0.130 Sum_probs=110.1
Q ss_pred cEEEEEeC-CCCCCCccceeeCccC--C-------CccccCHHHHHHHHHHHHH------CC---------------CcE
Q 013195 192 FVEILPIN-VGCLGACTYCKTKHAR--G-------HLGSYTVESLVGRVRTVIA------DG---------------VKE 240 (448)
Q Consensus 192 ~~~~i~is-rGC~~~CsFC~~~~~r--g-------~~rsr~~e~Iv~ei~~l~~------~G---------------~~e 240 (448)
....|.++ .||+++|.||..+... | ..+..+++++++++....+ .| .+.
T Consensus 51 ~~l~i~~t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~ 130 (311)
T 2z2u_A 51 RCIQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKH 130 (311)
T ss_dssp GEEEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCE
T ss_pred CeEEeccChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCE
Confidence 34567888 6999999999866422 1 2467889999988765532 12 456
Q ss_pred EEEE-ecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHH
Q 013195 241 VWLS-SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV 319 (448)
Q Consensus 241 i~~~-~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~v 319 (448)
|.|+ |.+...+ ..+.++++.+.+. + ..+.+. ++... .+. +..+ + ...+.+++++.++++
T Consensus 131 i~~s~gGEPll~-----~~l~~li~~~~~~----g-~~~~l~-TNG~~-~~~---l~~L----~-~~~v~isld~~~~~~ 190 (311)
T 2z2u_A 131 VAISLSGEPTLY-----PYLDELIKIFHKN----G-FTTFVV-SNGIL-TDV---IEKI----E-PTQLYISLDAYDLDS 190 (311)
T ss_dssp EEECSSSCGGGS-----TTHHHHHHHHHHT----T-CEEEEE-ECSCC-HHH---HHHC----C-CSEEEEECCCSSTTT
T ss_pred EEEeCCcCccch-----hhHHHHHHHHHHC----C-CcEEEE-CCCCC-HHH---HHhC----C-CCEEEEEeecCCHHH
Confidence 7886 4444333 3588999888763 2 255554 45432 222 3333 2 368999999999999
Q ss_pred HHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 013195 320 LSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (448)
Q Consensus 320 Lk~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~ 392 (448)
++.++++ .+.+++.+.++.+++. | .+...++ ..||.+. ++.+.++++.+++++.+++++|+|.++++.
T Consensus 191 ~~~i~~~~~~~~~~v~~~i~~l~~~--g-~v~i~~~-~~~g~n~-~~~~~~~~~~~~~~~~i~l~~~~p~g~~~~ 260 (311)
T 2z2u_A 191 YRRICGGKKEYWESILNTLDILKEK--K-RTCIRTT-LIRGYND-DILKFVELYERADVHFIELKSYMHVGYSQK 260 (311)
T ss_dssp C----CCCHHHHHHHHHHHHHHTTS--S-SEEEEEE-ECTTTTC-CGGGTHHHHHHHTCSEEEEEECC-------
T ss_pred HHHHhCCccchHHHHHHHHHHHHhc--C-CEEEEEE-EECCcch-hHHHHHHHHHHcCCCEEEEEeeEEcccccc
Confidence 9999887 6789999999999887 6 4444443 3577777 899999999999999999999999999873
No 10
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=99.32 E-value=8e-11 Score=119.95 Aligned_cols=182 Identities=18% Similarity=0.221 Sum_probs=130.6
Q ss_pred CCcEEEEEeCCCCCCCccceeeCccCC-CccccCHHHHHHHHHHHHH-CCCcEEEEEecCCCCCCCCCCCCHHHHHHHHH
Q 013195 190 NKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (448)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~rg-~~rsr~~e~Iv~ei~~l~~-~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~ 267 (448)
.+....+.++.||+.+|.||......+ ..+..+.+++.+.++.+.+ .|+++|.|+|++...+.. ..|.++++.+.
T Consensus 113 yp~~v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~~~gi~~V~ltGGEPll~~d---~~L~~il~~l~ 189 (416)
T 2a5h_A 113 YPDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSD---ETLEYIIAKLR 189 (416)
T ss_dssp SSSEEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHTCTTCCEEEEEESCTTSSCH---HHHHHHHHHHH
T ss_pred CCCEEEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHhcCCCcEEEEECCCCCCCCH---HHHHHHHHHHH
Confidence 455678899999999999997665434 3456789999999988887 699999999977655421 13778888886
Q ss_pred HhCCCCCcceEEEeec----CCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q 013195 268 AELPPDGSTMLRIGMT----NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343 (448)
Q Consensus 268 ~~~~~~~~~~iri~~~----~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~ 343 (448)
+ ++ +...+++.+- .|..+++.+ .+.+... ..+.+++++.+++ .+ + +++.++++.++++
T Consensus 190 ~-~~--~v~~i~i~Tng~~~~p~~it~e~---l~~L~~~---~~v~Isl~~~~~~---ei----~-~~v~~ai~~L~~a- 251 (416)
T 2a5h_A 190 E-IP--HVEIVRIGSRTPVVLPQRITPEL---VNMLKKY---HPVWLNTHFNHPN---EI----T-EESTRACQLLADA- 251 (416)
T ss_dssp T-ST--TCCEEEEECSHHHHCGGGCCHHH---HHHHGGG---CSEEEEECCCSGG---GC----C-HHHHHHHHHHHHT-
T ss_pred h-cC--CccEEEEEecccccccccCCHHH---HHHHHhc---CcEEEEEecCCHH---HH----h-HHHHHHHHHHHHc-
Confidence 5 43 4456777631 334444433 3333332 4678999987773 22 2 8999999999999
Q ss_pred CCCEEEEEEEE--eCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccC
Q 013195 344 PGMQIATDIIC--GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394 (448)
Q Consensus 344 pgi~i~~~~Iv--G~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~ 394 (448)
|+.+....++ |+ .++.+++.+.++++.++++...+++.+.+.+||+.+.
T Consensus 252 -Gi~v~i~~vll~Gv-Nd~~e~l~~l~~~l~~lgv~~~~i~~~~~~~g~~~~~ 302 (416)
T 2a5h_A 252 -GVPLGNQSVLLRGV-NDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFR 302 (416)
T ss_dssp -TCCEEEEEECCTTT-TCSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGGC
T ss_pred -CCEEEEEEEEECCC-CCCHHHHHHHHHHHHHcCCceEEEeecCCCCCccccc
Confidence 8765554444 66 4888999999999999998766666666678988664
No 11
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=99.20 E-value=2.1e-10 Score=115.51 Aligned_cols=184 Identities=16% Similarity=0.287 Sum_probs=125.3
Q ss_pred CcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHH----------CCCcEEEEEe-cCCCCCCCCCCCCH
Q 013195 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA----------DGVKEVWLSS-EDTGAYGRDIGVNL 259 (448)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~----------~G~~ei~~~~-~~~~~yg~d~~~~l 259 (448)
.....|.++.||+.+|.||..+.. |..|..++++|++++..... .++..|.|+| +....+ ...+
T Consensus 114 r~tlcVSsq~GCnl~C~fC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~GgGEPLln----~d~v 188 (404)
T 3rfa_A 114 RATLCVSSQVGCALECKFCSTAQQ-GFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLN----LNNV 188 (404)
T ss_dssp CEEEECCCEEECSSCCTTCGGGTT-CEEEECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECSSSCGGGC----HHHH
T ss_pred CceEEEEeCCCCCCcCCCCCCCCC-CCCCcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeCCCCcccC----HHHH
Confidence 456778888999999999987642 44678899999999987654 2478899985 222221 0235
Q ss_pred HHHHHHHHHhCCCCCc----ceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcC---CCCCHHHH
Q 013195 260 PILLNAIVAELPPDGS----TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDF 332 (448)
Q Consensus 260 ~~ll~~l~~~~~~~~~----~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~---R~~t~e~~ 332 (448)
.++++.+.+.. +. ..+.++ ++.. + +.+++ ++... -..+.+.+.+.+++..+.+. ++++.+++
T Consensus 189 ~~~i~~lk~~~---Gl~~s~r~itls-TnG~-~-p~i~~---L~~~~--d~~LaiSLka~d~e~~~~i~pv~~~~~le~v 257 (404)
T 3rfa_A 189 VPAMEIMLDDF---GFGLSKRRVTLS-TSGV-V-PALDK---LGDMI--DVALAISLHAPNDEIRDEIVPINKKYNIETF 257 (404)
T ss_dssp HHHHHHHHSTT---TTCCCGGGEEEE-ESCC-H-HHHHH---HHHHC--CCEEEEECCCSSHHHHHHHSGGGGTSCHHHH
T ss_pred HHHHHHHHhhc---CcCcCCCceEEE-CCCc-H-HHHHH---HHHhh--cceEEecccCCCHHHHHHhcCCccCCCHHHH
Confidence 66666665421 22 256665 3332 2 33333 33332 23577899999999987654 68999999
Q ss_pred HHHHHHH-HHhCC---CCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 013195 333 RTVVDTL-IELVP---GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (448)
Q Consensus 333 ~~~i~~i-r~~~p---gi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~ 392 (448)
.+.++.. .+.-. .+.+.+-+|=|+ .++++++.+.++|++.++. .+++.+|.|+|+++.
T Consensus 258 l~ai~~~~~~~g~~~~~V~ie~vLI~Gv-NDs~e~~~~La~ll~~l~~-~VnLIpynP~~~~~~ 319 (404)
T 3rfa_A 258 LAAVRRYLEKSNANQGRVTIEYVMLDHV-NDGTEHAHQLAELLKDTPC-KINLIPWNPFPGAPY 319 (404)
T ss_dssp HHHHHHHHHHCTTTTTCEEEEEEEBTTT-TCSHHHHHHHHHHTTTSCE-EEEEEECCCCTTCCC
T ss_pred HHHHHHHHHHhCCCcccEEEEEEEecCC-CCCHHHHHHHHHHHHcCCC-cEEEEeccCCCCCCC
Confidence 9999554 44411 345555555454 7899999999999999874 789999999988653
No 12
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=97.90 E-value=4.9e-05 Score=75.22 Aligned_cols=164 Identities=13% Similarity=0.211 Sum_probs=102.9
Q ss_pred EEEeCCCCCCCccceeeCccCCC---c-cccCHHHHHHHHHHHH-HCCCc-EEEEEecCCCCCCCCCCCC-HHHHHHHHH
Q 013195 195 ILPINVGCLGACTYCKTKHARGH---L-GSYTVESLVGRVRTVI-ADGVK-EVWLSSEDTGAYGRDIGVN-LPILLNAIV 267 (448)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg~---~-rsr~~e~Iv~ei~~l~-~~G~~-ei~~~~~~~~~yg~d~~~~-l~~ll~~l~ 267 (448)
.+...+||++.|.||......|. . .....++++++++... +.+.+ ..+-+|.++..|..+.... ..++|+.+.
T Consensus 110 ~ln~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~~TDpyp~E~~~~ltr~~le~l~ 189 (368)
T 4fhd_A 110 AIPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDIVGIDHLTHSLKKAIEFIG 189 (368)
T ss_dssp ECCSEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCSSBCHHHHHTTTCHHHHHHHHHH
T ss_pred eeCCccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEcCCCcchhhHHHhHHHHHHHHHH
Confidence 46778999999999976644442 1 3456899999987643 33433 4555666666663332223 335666665
Q ss_pred HhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCC-CCHHHHHHHHHHHHHhCCCC
Q 013195 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGM 346 (448)
Q Consensus 268 ~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~-~t~e~~~~~i~~ir~~~pgi 346 (448)
+. ....+++.+ -...++ . |..+...+.+ .+.+.+-+ +++-+.+-.+ -+.++-.++++.+.++ |+
T Consensus 190 ~~----~~~~v~i~T-Ks~lid-~---L~~l~~~~~v--~V~~Sitt--~~l~r~~EP~aps~~~RL~Ai~~l~~a--Gi 254 (368)
T 4fhd_A 190 AT----DYGRLRFVT-KYEHVD-H---LLDARHNGKT--RFRFSINS--RYVINHFEPGTSSFDGRLAAARKVAGA--GY 254 (368)
T ss_dssp HC----SSEEEEEEE-SCCCCG-G---GTTCCCTTCE--EEEEEECC--HHHHHHHCTTSCCHHHHHHHHHHHHHT--TC
T ss_pred hC----CCceEEEEe-CCcCHH-H---HHhcCcCCce--EEEEEEcC--HHHHHHcCCCCCCHHHHHHHHHHHHHC--CC
Confidence 42 234566653 222332 1 2222222222 44444433 6777778665 5899999999999999 99
Q ss_pred EEEEEEEEeCCCCCH-HHHHHHHHHHHh
Q 013195 347 QIATDIICGFPGETD-EDFNQTVNLIKE 373 (448)
Q Consensus 347 ~i~~~~IvG~PgET~-ed~~~tl~~i~~ 373 (448)
.+...+.==+|+++. ++..+.++.+.+
T Consensus 255 pv~v~iaPIiP~~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 255 KLGFVVAPIYRHEGWERGYFELFQELAR 282 (368)
T ss_dssp EEEEEEEEECCCTTHHHHHHHHHHHHHH
T ss_pred eEEEEEeCcCCCCCCHHHHHHHHHHHHH
Confidence 988888777888775 677778876544
No 13
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=97.26 E-value=0.0041 Score=55.06 Aligned_cols=132 Identities=10% Similarity=0.098 Sum_probs=85.7
Q ss_pred cEEEEEecCCCCCCCCCCCCH-HHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCH
Q 013195 239 KEVWLSSEDTGAYGRDIGVNL-PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317 (448)
Q Consensus 239 ~ei~~~~~~~~~yg~d~~~~l-~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~ 317 (448)
..|.|+|.+.+.+ .++ .++++.+.+. + ..+.+. +|.. +.+.. +..+... ...+.+.+.+.++
T Consensus 5 ~~v~~tGGEPll~-----~~~~~~l~~~~~~~----g-~~~~l~-TNG~-l~~~~--~~~l~~~---~d~v~isld~~~~ 67 (182)
T 3can_A 5 GGVTFCGGEPLLH-----PEFLIDILKRCGQQ----G-IHRAVD-TTLL-ARKET--VDEVMRN---CELLLIDLKSMDS 67 (182)
T ss_dssp CCEEECSSTGGGS-----HHHHHHHHHHHHHT----T-CCEEEE-CTTC-CCHHH--HHHHHHT---CSEEEEECCCSCH
T ss_pred CEEEEEcccccCC-----HHHHHHHHHHHHHC----C-CcEEEE-CCCC-CCHHH--HHHHHhh---CCEEEEECCCCCH
Confidence 3467776554433 234 4777777652 2 345554 4554 33222 3344433 3578899999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCC--CCHHHHHHHHHHHHhc-CC-CeEEEEeceeCCCCc
Q 013195 318 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG--ETDEDFNQTVNLIKEY-KF-PQVHISQFYPRPGTP 391 (448)
Q Consensus 318 ~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~Pg--ET~ed~~~tl~~i~~l-~~-~~v~i~~~~p~pGT~ 391 (448)
+..+.+.. .+.+.+.+.++.+++. |+.+...+.+ .|| ++.+++.+.++++.++ ++ ..+++.+|.|.....
T Consensus 68 ~~~~~~~g-~~~~~i~~~i~~l~~~--g~~v~i~~~v-~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~~~ 141 (182)
T 3can_A 68 TVHQTFCD-VPNELILKNIRRVAEA--DFPYYIRIPL-IEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGK 141 (182)
T ss_dssp HHHHHHHS-SCSHHHHHHHHHHHHT--TCCEEEEEEE-CBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC-----
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHhC--CCeEEEEEEE-ECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccCHHH
Confidence 88876643 4469999999999998 7655444433 244 7889999999999999 88 899999999987665
No 14
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=97.24 E-value=0.0036 Score=54.73 Aligned_cols=106 Identities=18% Similarity=0.284 Sum_probs=74.6
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~ 123 (448)
..++.+-|.|=..-..-...++..|+..||++..- ..++|+|++ ||+.+. ....+.++++.+++
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~l-S~~~~~-~~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGV-SILNGA-HLHLMKRLMAKLRE 95 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEE-EESSSC-HHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEE-Eeechh-hHHHHHHHHHHHHh
Confidence 45788887777777777889999999999999764 468999999 555543 34556777777776
Q ss_pred CC---CCEEEEccccccchh-hhcCCccEEEcCCc-hhHHHHHHHHH
Q 013195 124 AK---KPLVVAGCVPQGSRD-LKELEGVSIVGVQQ-IDRVVEVVEET 165 (448)
Q Consensus 124 ~~---~~vVvgGc~a~~~~e-~~~~~~d~vvg~~~-~~~i~~~l~~~ 165 (448)
.+ .+|++||..++...+ +.....|.+++.+. .....+.+.+.
T Consensus 96 ~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~ 142 (161)
T 2yxb_A 96 LGADDIPVVLGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKL 142 (161)
T ss_dssp TTCTTSCEEEEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHH
Confidence 54 679999977654443 44566788777654 23455555443
No 15
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=95.81 E-value=0.041 Score=46.47 Aligned_cols=94 Identities=18% Similarity=0.249 Sum_probs=64.4
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcC
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~ 124 (448)
.++.+-|.|=-.-..-...++..|+..||++++- ..+||+|++ ||+.+.. ...+.++++.+++.
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~l-S~~~~~~-~~~~~~~i~~l~~~ 81 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILV-SSLYGQG-EIDCKGLRQKCDEA 81 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEE-EECSSTH-HHHHTTHHHHHHHT
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEE-EecCcCc-HHHHHHHHHHHHhc
Confidence 3677777766666667788999999999998743 468999999 5565443 34566677777665
Q ss_pred C---CCEEEEcccc---ccchh----hhcCCccEEEcCCc
Q 013195 125 K---KPLVVAGCVP---QGSRD----LKELEGVSIVGVQQ 154 (448)
Q Consensus 125 ~---~~vVvgGc~a---~~~~e----~~~~~~d~vvg~~~ 154 (448)
+ .+|++||-.. +.+++ +.+...|.+++.+.
T Consensus 82 g~~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~ 121 (137)
T 1ccw_A 82 GLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGT 121 (137)
T ss_dssp TCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTC
T ss_pred CCCCCEEEEECCCcCchHhhhhhHHHHHHCCCCEEECCCC
Confidence 4 5799999642 22222 34556788887654
No 16
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=95.12 E-value=0.1 Score=55.90 Aligned_cols=95 Identities=13% Similarity=0.225 Sum_probs=70.3
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~ 123 (448)
..+|.+-|.|--.-..-...++..|+..||++++. ..+||+|++++ +.+ .....+..+++.+++
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSs-l~~-~~~~~~~~vi~~L~~ 673 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSS-LAG-GHLTLVPALRKELDK 673 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTTCSEEEEEE-CSS-CHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcCCCEEEEee-ecH-hHHHHHHHHHHHHHh
Confidence 35899999999888888889999999999999765 36899999933 332 333456777788877
Q ss_pred CCC---CEEEEccccccchh-hhcCCccEEEcCCc
Q 013195 124 AKK---PLVVAGCVPQGSRD-LKELEGVSIVGVQQ 154 (448)
Q Consensus 124 ~~~---~vVvgGc~a~~~~e-~~~~~~d~vvg~~~ 154 (448)
.|. +|++||-.+....+ +.+..+|.+++.+.
T Consensus 674 ~G~~~i~VivGG~~p~~d~~~l~~~GaD~~f~~gt 708 (727)
T 1req_A 674 LGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGT 708 (727)
T ss_dssp TTCTTSEEEEEESCCGGGHHHHHHTTEEEEECTTC
T ss_pred cCCCCCEEEEcCCCccccHHHHHhCCCCEEEcCCc
Confidence 664 79999966654333 45667788887654
No 17
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=94.86 E-value=0.18 Score=54.13 Aligned_cols=94 Identities=13% Similarity=0.246 Sum_probs=69.2
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~ 123 (448)
..+|.+-|.|--.-..-...++..|+..||++++. ..+||+|++++ ..+ .....+..+++.+++
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSs-l~~-~~~~~~~~vi~~Lr~ 681 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDADVHAVGVST-LAA-GHKTLVPELIKELNS 681 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEE-CSS-CHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHcCCCEEEEee-ecH-HHHHHHHHHHHHHHh
Confidence 35899999999888888889999999999999865 36899999933 322 333456777788877
Q ss_pred CCC---CEEEEccccccchh-hhcCCccEEEcCC
Q 013195 124 AKK---PLVVAGCVPQGSRD-LKELEGVSIVGVQ 153 (448)
Q Consensus 124 ~~~---~vVvgGc~a~~~~e-~~~~~~d~vvg~~ 153 (448)
.|. +|++||-.|....+ +.+..+|.+++.+
T Consensus 682 ~G~~dv~VivGG~~P~~d~~~l~~~GaD~~f~pg 715 (762)
T 2xij_A 682 LGRPDILVMCGGVIPPQDYEFLFEVGVSNVFGPG 715 (762)
T ss_dssp TTCTTSEEEEEESCCGGGHHHHHHHTCCEEECTT
T ss_pred cCCCCCEEEEeCCCCcccHHHHHhCCCCEEeCCC
Confidence 764 78999955544333 4566678888754
No 18
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=93.94 E-value=0.23 Score=44.81 Aligned_cols=89 Identities=16% Similarity=0.182 Sum_probs=62.8
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~ 123 (448)
..++-+-|.+=..-..-...++..|+..||++.+- ..++|+|++ |++.+.. ...+.++++.+++
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~l-S~~~~~~-~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGM-SALLTTT-MMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEE-ECCSGGG-THHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-ecccccc-HHHHHHHHHHHHh
Confidence 34677767666666677889999999999999753 357899999 6665543 3457777888876
Q ss_pred CC----CCEEEEccccccchhh-hcCCccEEE
Q 013195 124 AK----KPLVVAGCVPQGSRDL-KELEGVSIV 150 (448)
Q Consensus 124 ~~----~~vVvgGc~a~~~~e~-~~~~~d~vv 150 (448)
.+ .+|++||..++ ++. ..+..|.+.
T Consensus 166 ~~~~~~~~v~vGG~~~~--~~~~~~~gad~~~ 195 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLS--QDFADEIGADGYA 195 (210)
T ss_dssp TTCGGGCEEEEESTTCC--HHHHHHHTCSEEC
T ss_pred cCCCCCCeEEEECCCCC--HHHHHHcCCeEEE
Confidence 54 68999998765 443 344455443
No 19
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=93.65 E-value=0.99 Score=42.91 Aligned_cols=167 Identities=11% Similarity=0.106 Sum_probs=101.2
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (448)
...+.++.++-++.+.+.|+..|.+.+.....|-... ....++++.+.+. ....+... + +. . +.+...
T Consensus 21 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~-~~~~e~~~~i~~~----~~~~v~~l-~-~n--~---~~i~~a 88 (295)
T 1ydn_A 21 RFVPTADKIALINRLSDCGYARIEATSFVSPKWVPQL-ADSREVMAGIRRA----DGVRYSVL-V-PN--M---KGYEAA 88 (295)
T ss_dssp SCCCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGG-TTHHHHHHHSCCC----SSSEEEEE-C-SS--H---HHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcCcCEEEEccCcCccccccc-cCHHHHHHHHHhC----CCCEEEEE-e-CC--H---HHHHHH
Confidence 3578999999999999999999998764322221100 1345666666431 12333322 2 32 1 224444
Q ss_pred HhCCCcccccccccCCCCHHHH-HhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EeCCCC---CHHHHHHHHHH
Q 013195 299 LRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDII--CGFPGE---TDEDFNQTVNL 370 (448)
Q Consensus 299 ~~~~~~~~~l~iglES~s~~vL-k~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~I--vG~PgE---T~ed~~~tl~~ 370 (448)
.+.+ +..+++-+ ++|+.-. ..+++. ...+.+.++++.+++. |+.+.+.+. +|.|.+ +.+.+.+.++.
T Consensus 89 ~~~G--~~~V~i~~-~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~--G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~ 163 (295)
T 1ydn_A 89 AAAH--ADEIAVFI-SASEGFSKANINCTIAESIERLSPVIGAAIND--GLAIRGYVSCVVECPYDGPVTPQAVASVTEQ 163 (295)
T ss_dssp HHTT--CSEEEEEE-ESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECSSEETTTEECCHHHHHHHHHH
T ss_pred HHCC--CCEEEEEE-ecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEEEEecCCcCCCCCHHHHHHHHHH
Confidence 4432 45676654 5566555 334554 3556677889999999 999987776 555543 56777777777
Q ss_pred HHhcCCCeEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHHH
Q 013195 371 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412 (448)
Q Consensus 371 i~~l~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~ 412 (448)
+.+.+.+.+.+.- --| ...+....++.+.+.+
T Consensus 164 ~~~~G~d~i~l~D---t~G-------~~~P~~~~~lv~~l~~ 195 (295)
T 1ydn_A 164 LFSLGCHEVSLGD---TIG-------RGTPDTVAAMLDAVLA 195 (295)
T ss_dssp HHHHTCSEEEEEE---TTS-------CCCHHHHHHHHHHHHT
T ss_pred HHhcCCCEEEecC---CCC-------CcCHHHHHHHHHHHHH
Confidence 7799999887762 112 1335556666555554
No 20
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=93.17 E-value=0.76 Score=42.90 Aligned_cols=103 Identities=13% Similarity=0.142 Sum_probs=68.6
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~ 123 (448)
..++-+-|.+=..-..-...++..|+..||++.+- ..++|+|++ ||+.+.. ...+.++++++++
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~l-S~l~~~~-~~~~~~~i~~l~~ 200 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTG-TALMTTT-MYAFKEVNDMLLE 200 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEE-ECCCTTT-TTHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-EeeccCC-HHHHHHHHHHHHh
Confidence 45777777766666677888999999999998542 357899999 6665543 2356777888877
Q ss_pred CC--CCEEEEccccccchhh-hcCCccEEEcCCchhHHHHHHHHHh
Q 013195 124 AK--KPLVVAGCVPQGSRDL-KELEGVSIVGVQQIDRVVEVVEETL 166 (448)
Q Consensus 124 ~~--~~vVvgGc~a~~~~e~-~~~~~d~vvg~~~~~~i~~~l~~~~ 166 (448)
.+ .+|++||..++ ++. ..+..|.. +... ...++++....
T Consensus 201 ~~~~~~v~vGG~~~~--~~~~~~igad~~-~~da-~~av~~~~~l~ 242 (258)
T 2i2x_B 201 NGIKIPFACGGGAVN--QDFVSQFALGVY-GEEA-ADAPKIADAII 242 (258)
T ss_dssp TTCCCCEEEESTTCC--HHHHHTSTTEEE-CSST-THHHHHHHHHH
T ss_pred cCCCCcEEEECccCC--HHHHHHcCCeEE-ECCH-HHHHHHHHHHH
Confidence 65 68999998775 443 24444443 3333 34455555544
No 21
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=93.07 E-value=0.51 Score=44.20 Aligned_cols=94 Identities=18% Similarity=0.153 Sum_probs=63.8
Q ss_pred CceEEEEecCCccChhHHHHHHHH--------HHhC-CCeeecC--------------CCCCcEEEEeecccccc--hHH
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQ--------LSAF-GYALTDN--------------SEEADIWLINTCTVKSP--SQS 112 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~--------L~~~-G~~~~~~--------------~~~aDvv~intctv~~~--a~~ 112 (448)
..+|-+-|.|=-.-..--..++.. |+.+ ||++++- ..+||+|++ ||+.+.. ...
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~~d~Vgl-S~l~t~~~~~~~ 198 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELEADVLLV-SQTVTQKNVHIQ 198 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTTCSEEEE-ECCCCTTSHHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcCCCEEEE-EeecCCccchHH
Confidence 446655555544445556666666 9999 9998753 478999999 7777651 334
Q ss_pred HHHHHHHHHhcCC----CCEEEEccccccchhh-hcCCccEEEcCCc
Q 013195 113 AMDTLIAKCKSAK----KPLVVAGCVPQGSRDL-KELEGVSIVGVQQ 154 (448)
Q Consensus 113 ~~~~~i~~~~~~~----~~vVvgGc~a~~~~e~-~~~~~d~vvg~~~ 154 (448)
.+.++++.+++.| .+|++||... .++. .++..|.+.+...
T Consensus 199 ~~~~~i~~L~~~g~~~~i~vivGG~~~--~~~~a~~iGad~~~~da~ 243 (262)
T 1xrs_B 199 NMTHLIELLEAEGLRDRFVLLCGGPRI--NNEIAKELGYDAGFGPGR 243 (262)
T ss_dssp HHHHHHHHHHHTTCGGGSEEEEECTTC--CHHHHHTTTCSEEECTTC
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCcC--CHHHHHHcCCeEEECCch
Confidence 5667777777665 5789999743 4553 4566788887654
No 22
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=92.47 E-value=3.2 Score=39.47 Aligned_cols=167 Identities=10% Similarity=0.088 Sum_probs=103.7
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC--CCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~--~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~ 296 (448)
...+.++.++-++.|.+.|++.|.+.+.. .....+ .+..++++.+.+ .+ ...+.. +-+. . ..+.
T Consensus 22 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~---~~~~~p~~~d~~~~~~~~~~-~~---~~~~~~--l~~~--~---~~i~ 87 (298)
T 2cw6_A 22 NIVSTPVKIKLIDMLSEAGLSVIETTSFV---SPKWVPQMGDHTEVLKGIQK-FP---GINYPV--LTPN--L---KGFE 87 (298)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEECCEECC---CTTTCGGGTTHHHHHHHSCC-CT---TCBCCE--ECCS--H---HHHH
T ss_pred CCCCHHHHHHHHHHHHHcCcCEEEECCCc---CcccccccCCHHHHHHHHhh-CC---CCEEEE--EcCC--H---HhHH
Confidence 45789999999999999999999886522 111111 233445444432 21 122222 1221 1 2244
Q ss_pred HHHhCCCcccccccccCCCCHH-HHHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EeCCCC---CHHHHHHHH
Q 013195 297 EVLRHPCVYSFLHVPVQSGSDA-VLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDII--CGFPGE---TDEDFNQTV 368 (448)
Q Consensus 297 ~l~~~~~~~~~l~iglES~s~~-vLk~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~I--vG~PgE---T~ed~~~tl 368 (448)
...+.+ ...+++.+ +.|+. ..+.+++. ...+.+.+.++.+++. |+.+..+++ +|.|.+ +.+.+.+.+
T Consensus 88 ~a~~ag--~~~v~i~~-~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~--G~~v~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (298)
T 2cw6_A 88 AAVAAG--AKEVVIFG-AASELFTKKNINCSIEESFQRFDAILKAAQSA--NISVRGYVSCALGCPYEGKISPAKVAEVT 162 (298)
T ss_dssp HHHHTT--CSEEEEEE-ESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHT--TCEEEEEEETTTCBTTTBSCCHHHHHHHH
T ss_pred HHHHCC--CCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEEEeeCCcCCCCCHHHHHHHH
Confidence 444443 46777755 55654 44667775 3667888999999999 999998887 455543 578888888
Q ss_pred HHHHhcCCCeEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHHHHH
Q 013195 369 NLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414 (448)
Q Consensus 369 ~~i~~l~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~ 414 (448)
+.+.+++.+.+.+.- |- -...+....+..+.+.+..
T Consensus 163 ~~~~~~Ga~~i~l~D------T~----G~~~P~~~~~lv~~l~~~~ 198 (298)
T 2cw6_A 163 KKFYSMGCYEISLGD------TI----GVGTPGIMKDMLSAVMQEV 198 (298)
T ss_dssp HHHHHTTCSEEEEEE------TT----SCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCCEEEecC------CC----CCcCHHHHHHHHHHHHHhC
Confidence 999999998877652 21 1234556666666665543
No 23
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=90.27 E-value=0.65 Score=48.53 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=59.4
Q ss_pred ceEEEEecCCccChhHHHH----HHHHHHhCCCeeecC--------------CCCCcEEEEeecccccc--hHHHHHHHH
Q 013195 59 ETIYMKTFGCSHNQSDSEY----MAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSP--SQSAMDTLI 118 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~----~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~--a~~~~~~~i 118 (448)
.+|-+-|.|=-.-..--.. ++..|+..||++++- ..+||+|.+ ||..+.. ....+.+++
T Consensus 603 GKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~EedADVVGL-SsLLTt~dihL~~MkevI 681 (763)
T 3kp1_A 603 LKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIELKADAILA-STIISHDDIHYKNMKRIH 681 (763)
T ss_dssp CEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHTTCSEEEE-ECCCCGGGHHHHHHHHHH
T ss_pred CEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-eccccCchhhHHHHHHHH
Confidence 3565555443332222221 246789999999764 468999999 6666652 344566777
Q ss_pred HHHhcCCC----CEEEEccccccchhh-hcCCccEEEcCCc
Q 013195 119 AKCKSAKK----PLVVAGCVPQGSRDL-KELEGVSIVGVQQ 154 (448)
Q Consensus 119 ~~~~~~~~----~vVvgGc~a~~~~e~-~~~~~d~vvg~~~ 154 (448)
+.+++.|. +|++||-.++ ++. .++..|.+.+.+.
T Consensus 682 elLrE~GlrDkIkVIVGGa~~t--qd~AkeIGADa~f~DAT 720 (763)
T 3kp1_A 682 ELAVEKGIRDKIMIGCGGTQVT--PEVAVKQGVDAGFGRGS 720 (763)
T ss_dssp HHHHHTTCTTTSEEEEECTTCC--HHHHHTTTCSEEECTTC
T ss_pred HHHHhcCCCCCCEEEEECCCCC--HHHHHHcCCcEEECCcc
Confidence 77777653 6889997654 454 3566788887654
No 24
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=89.92 E-value=6.2 Score=37.49 Aligned_cols=145 Identities=14% Similarity=0.138 Sum_probs=89.3
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC--CCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~--~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~ 296 (448)
.+.+.++.++-++.|.+.|+..|...+.. ...... .+..++++.+.+. ....+... -+. . +.+.
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~---~~~~~~~~~d~~~~~~~~~~~----~~~~~~~l--~~~--~---~~i~ 90 (302)
T 2ftp_A 25 QPIEVADKIRLVDDLSAAGLDYIEVGSFV---SPKWVPQMAGSAEVFAGIRQR----PGVTYAAL--APN--L---KGFE 90 (302)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEEEEEECS---CTTTCGGGTTHHHHHHHSCCC----TTSEEEEE--CCS--H---HHHH
T ss_pred CCCCHHHHHHHHHHHHHcCcCEEEECCCc---CccccccccCHHHHHHHhhhc----CCCEEEEE--eCC--H---HHHH
Confidence 46789999999999999999999886521 111100 1334555544321 22333332 231 1 2244
Q ss_pred HHHhCCCcccccccccCCCCH-HHHHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEE--eCCCC---CHHHHHHHH
Q 013195 297 EVLRHPCVYSFLHVPVQSGSD-AVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIIC--GFPGE---TDEDFNQTV 368 (448)
Q Consensus 297 ~l~~~~~~~~~l~iglES~s~-~vLk~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~Iv--G~PgE---T~ed~~~tl 368 (448)
...+.+ +..+++-. +.|+ ...+.+++. ...+.+.+.++.+++. |+.+.+.+.. |.|.+ +++.+.+.+
T Consensus 91 ~a~~aG--~~~v~i~~-~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~--G~~V~~~l~~~~~~e~~~~~~~~~~~~~~ 165 (302)
T 2ftp_A 91 AALESG--VKEVAVFA-AASEAFSQRNINCSIKDSLERFVPVLEAARQH--QVRVRGYISCVLGCPYDGDVDPRQVAWVA 165 (302)
T ss_dssp HHHHTT--CCEEEEEE-ESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECTTCBTTTBCCCHHHHHHHH
T ss_pred HHHhCC--cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEEEeeCCcCCCCCHHHHHHHH
Confidence 444432 56777655 4444 344667665 3567788889999999 9988887765 44432 456667777
Q ss_pred HHHHhcCCCeEEEE
Q 013195 369 NLIKEYKFPQVHIS 382 (448)
Q Consensus 369 ~~i~~l~~~~v~i~ 382 (448)
+.+.+.+.+.+.+.
T Consensus 166 ~~~~~~G~d~i~l~ 179 (302)
T 2ftp_A 166 RELQQMGCYEVSLG 179 (302)
T ss_dssp HHHHHTTCSEEEEE
T ss_pred HHHHHcCCCEEEEe
Confidence 77779999877665
No 25
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=89.48 E-value=0.54 Score=49.64 Aligned_cols=93 Identities=9% Similarity=0.052 Sum_probs=65.3
Q ss_pred CceEEEEecCCc-cChhHHHHHHHHHHhCCCeeecC-------------CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 013195 58 TETIYMKTFGCS-HNQSDSEYMAGQLSAFGYALTDN-------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (448)
Q Consensus 58 ~~~~~~~t~GC~-~N~~dse~~~~~L~~~G~~~~~~-------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~ 123 (448)
..++.+-++|-- .-..-...++..|+..||++++. ..+||+|+| |+........+..+++.+++
T Consensus 509 ~~kvvLatLg~Da~Hd~ga~~va~~l~~aGfeVi~~g~~~tee~v~aa~e~~adiv~l--Ssl~~~~~~~~~~v~~~Lk~ 586 (637)
T 1req_B 509 RPKVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVEGGTTAEIVEAFKKSGAQVADL--CSSAKVYAQQGLEVAKALKA 586 (637)
T ss_dssp CCBCEEEECSCHHHHHHHHHHHHHHHHHTTCBCCEEECCCHHHHHHHHHHHTCSEEEE--ECCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhCCchhhhhhHHHHHHHHHhCCeeEEeCCCCCCHHHHHHHHhcCCCEEEE--ecccHHHHHHHHHHHHHHHh
Confidence 457999999986 55566788999999999999875 258999999 44433333456778888888
Q ss_pred CCC-CEEEEccccccc----hhhhcCCccEEEcCCc
Q 013195 124 AKK-PLVVAGCVPQGS----RDLKELEGVSIVGVQQ 154 (448)
Q Consensus 124 ~~~-~vVvgGc~a~~~----~e~~~~~~d~vvg~~~ 154 (448)
.|. +|+|||- |... +++.. .+|.++..+.
T Consensus 587 aG~~~V~vgG~-P~~d~~~~~~~~~-G~D~~~~~g~ 620 (637)
T 1req_B 587 AGAKALYLSGA-FKEFGDDAAEAEK-LIDGRLFMGM 620 (637)
T ss_dssp TTCSEEEEESC-GGGGGGGHHHHHH-HCCCEECTTC
T ss_pred CCCCeEEEeCC-CCccchhhHHHHh-ccceEecCCc
Confidence 885 6889984 3322 23444 5576665543
No 26
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=89.42 E-value=1.2 Score=40.40 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=53.9
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeecC--------------CCCCcEEEE--eecccccchHHHHHHHHHHH
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLI--NTCTVKSPSQSAMDTLIAKC 121 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~--------------~~~aDvv~i--ntctv~~~a~~~~~~~i~~~ 121 (448)
..++-+-|.+=-.-.---..++..|+..||++++- ..++|+|++ ++... +....+.+.++.+
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~--~~~~~~~~~i~~l 169 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMT--TSMLGQKDLMDRL 169 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSH--HHHTHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhccc--CcHHHHHHHHHHH
Confidence 35676666655555566778889999999998764 467899999 44322 3344567777777
Q ss_pred hcCC----CCEEEEccccc
Q 013195 122 KSAK----KPLVVAGCVPQ 136 (448)
Q Consensus 122 ~~~~----~~vVvgGc~a~ 136 (448)
++.+ .+|++||-..+
T Consensus 170 ~~~~~~~~v~v~vGG~~~~ 188 (215)
T 3ezx_A 170 NEEKLRDSVKCMFGGAPVS 188 (215)
T ss_dssp HHTTCGGGSEEEEESSSCC
T ss_pred HHcCCCCCCEEEEECCCCC
Confidence 7664 47999996654
No 27
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=87.10 E-value=9.1 Score=36.48 Aligned_cols=145 Identities=12% Similarity=0.064 Sum_probs=89.3
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC--CCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~--~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~ 296 (448)
.+.+.++.++-++.|.+.|+..|.+.+. ......+ .+..++++.+.+ . ....+. .+-+. ... +.
T Consensus 23 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~---~~~~~~p~~~d~~~~~~~~~~-~---~~~~~~--~l~~~--~~~---i~ 88 (307)
T 1ydo_A 23 VWIATEDKITWINQLSRTGLSYIEITSF---VHPKWIPALRDAIDVAKGIDR-E---KGVTYA--ALVPN--QRG---LE 88 (307)
T ss_dssp SCCCHHHHHHHHHHHHTTTCSEEEEEEC---SCTTTCGGGTTHHHHHHHSCC-C---TTCEEE--EECCS--HHH---HH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCC---cCcccccccCCHHHHHHHhhh-c---CCCeEE--EEeCC--HHh---HH
Confidence 5678999999999999999999998652 1111110 123444444422 1 222332 23332 122 33
Q ss_pred HHHhCCCcccccccccCCCCHHH-HHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeC--CC---CCHHHHHHHH
Q 013195 297 EVLRHPCVYSFLHVPVQSGSDAV-LSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGF--PG---ETDEDFNQTV 368 (448)
Q Consensus 297 ~l~~~~~~~~~l~iglES~s~~v-Lk~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~--Pg---ET~ed~~~tl 368 (448)
...+.+ ...+++.+ |.|+.- .+.+++. ...+.+.+.++.+++. |..+..+++.-| |. -+.+.+.+.+
T Consensus 89 ~a~~~g--~~~v~i~~-~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~v~~~i~~~~~~~~~~~~~~~~~~~~~ 163 (307)
T 1ydo_A 89 NALEGG--INEACVFM-SASETHNRKNINKSTSESLHILKQVNNDAQKA--NLTTRAYLSTVFGCPYEKDVPIEQVIRLS 163 (307)
T ss_dssp HHHHHT--CSEEEEEE-ESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECTTCBTTTBCCCHHHHHHHH
T ss_pred HHHhCC--cCEEEEEe-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEEEEecCCcCCCCCHHHHHHHH
Confidence 333322 45677766 666643 3556664 2456778889999999 998888887654 43 2567788888
Q ss_pred HHHHhcCCCeEEEE
Q 013195 369 NLIKEYKFPQVHIS 382 (448)
Q Consensus 369 ~~i~~l~~~~v~i~ 382 (448)
+.+.+.+.+.+.+-
T Consensus 164 ~~~~~~Ga~~i~l~ 177 (307)
T 1ydo_A 164 EALFEFGISELSLG 177 (307)
T ss_dssp HHHHHHTCSCEEEE
T ss_pred HHHHhcCCCEEEEc
Confidence 88889998877654
No 28
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=85.77 E-value=6.8 Score=37.12 Aligned_cols=145 Identities=8% Similarity=-0.035 Sum_probs=86.1
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (448)
.+.+.++-++-++.|.+.|++.|.....- ... .=.+.++++.+..+ + ..+.. +-+.. ...++...+.
T Consensus 22 ~~~~~~~K~~i~~~L~~~Gv~~IE~g~p~---~~~----~d~e~v~~i~~~~~--~-~~i~~--l~~~~-~~di~~a~~~ 88 (293)
T 3ewb_X 22 VNFDVKEKIQIALQLEKLGIDVIEAGFPI---SSP----GDFECVKAIAKAIK--H-CSVTG--LARCV-EGDIDRAEEA 88 (293)
T ss_dssp -CCCHHHHHHHHHHHHHHTCSEEEEECGG---GCH----HHHHHHHHHHHHCC--S-SEEEE--EEESS-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCC---CCc----cHHHHHHHHHHhcC--C-CEEEE--EecCC-HHHHHHHHHH
Confidence 46789999999999999999999986421 111 11355677766543 2 23222 21211 1222323333
Q ss_pred HhCCCcccccccccCCCCHHH-HHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 013195 299 LRHPCVYSFLHVPVQSGSDAV-LSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (448)
Q Consensus 299 ~~~~~~~~~l~iglES~s~~v-Lk~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (448)
+...+ ...+++-+ |.|+-- .+.+++. ...+.+.+.++.+++. |..+..+...+. --+.+.+.+.++.+.+.+
T Consensus 89 ~~~ag-~~~v~i~~-~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~--g~~v~~~~~d~~-~~~~~~~~~~~~~~~~~G 163 (293)
T 3ewb_X 89 LKDAV-SPQIHIFL-ATSDVHMEYKLKMSRAEVLASIKHHISYARQK--FDVVQFSPEDAT-RSDRAFLIEAVQTAIDAG 163 (293)
T ss_dssp HTTCS-SEEEEEEE-ECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTT--CSCEEEEEETGG-GSCHHHHHHHHHHHHHTT
T ss_pred HhhcC-CCEEEEEe-cCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhC--CCEEEEEeccCC-CCCHHHHHHHHHHHHHcC
Confidence 33333 46777755 556543 3555553 2455667777888888 877765554332 245677788888899999
Q ss_pred CCeEEE
Q 013195 376 FPQVHI 381 (448)
Q Consensus 376 ~~~v~i 381 (448)
.+.+.+
T Consensus 164 ~~~i~l 169 (293)
T 3ewb_X 164 ATVINI 169 (293)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 886654
No 29
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=85.43 E-value=2.7 Score=43.89 Aligned_cols=78 Identities=13% Similarity=0.190 Sum_probs=57.6
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeecC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~--------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~ 123 (448)
..+|-+-|.+=-.-..-...++..|+..||++++- ..++|+|++ ||+.+.. ...+..+++++++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~~diVgL-S~l~t~~-~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGL-SGLITPS-LDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEE-ECCSTHH-HHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-EecCCCC-HHHHHHHHHHHHH
Confidence 34677766665666667788899999999998653 368999999 6666543 4457777888877
Q ss_pred CC--CCEEEEcccccc
Q 013195 124 AK--KPLVVAGCVPQG 137 (448)
Q Consensus 124 ~~--~~vVvgGc~a~~ 137 (448)
.| .+|+|||...+.
T Consensus 176 ~g~~i~ViVGGa~~~~ 191 (579)
T 3bul_A 176 QGFTIPLLIGGATTSK 191 (579)
T ss_dssp TTCCSCEEEESTTCCH
T ss_pred cCCCCeEEEEccccch
Confidence 65 689999976654
No 30
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=84.38 E-value=11 Score=30.13 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=67.8
Q ss_pred EEEecCCccChhHHHHHHHHHHhCCCeeecC-CCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEcccccc-ch
Q 013195 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG-SR 139 (448)
Q Consensus 62 ~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~-~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~-~~ 139 (448)
-|+|++-.- +-+.+.++|.+.||+..+. ...+|++++ -++..+....-+...|+.+++.|++|+.-=+|... .|
T Consensus 7 lFISh~~~d---~~~~L~~~l~~~~f~~~~~~I~~~~~vIv-L~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~~P 82 (111)
T 1eiw_A 7 LYITEGEVE---DYRVFLERLEQSGLEWRPATPEDADAVIV-LAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLENVP 82 (111)
T ss_dssp EEECCCCSH---HHHHHHHHHHHHCSCEEECCSSSCSEEEE-EGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSCCC
T ss_pred EEEecccHh---HHHHHHHHHhCCCCeeecCccccCCEEEE-EeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCcCC
Confidence 456666663 7788889998779988764 567999988 56665544455677788888899998855555432 23
Q ss_pred hhhcCCccEEEcCCchhHHHHHHHHH
Q 013195 140 DLKELEGVSIVGVQQIDRVVEVVEET 165 (448)
Q Consensus 140 e~~~~~~d~vvg~~~~~~i~~~l~~~ 165 (448)
..-.-.++.++|-.. +.|.+.+...
T Consensus 83 ~~l~~~a~~iV~Wn~-~~I~~aI~~~ 107 (111)
T 1eiw_A 83 PELEAVSSEVVGWNP-HCIRDALEDA 107 (111)
T ss_dssp TTHHHHCSEEECSCH-HHHHHHHHHH
T ss_pred HHHHhhCceeccCCH-HHHHHHHHhc
Confidence 211112678999875 6788777654
No 31
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=82.43 E-value=9.9 Score=36.80 Aligned_cols=162 Identities=13% Similarity=0.171 Sum_probs=96.9
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEE-----ecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLS-----SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~-----~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~ 293 (448)
...+.++.++-++.|.+.|+..|.+. ....+.+|... ..-.+.++++.+..+ ...+... +.|..-...
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~-~~~~e~l~~i~~~~~---~~~i~~l-~~p~~~~~~-- 97 (345)
T 1nvm_A 25 HQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGR-HTDLEYIEAVAGEIS---HAQIATL-LLPGIGSVH-- 97 (345)
T ss_dssp TCCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCS-SCHHHHHHHHHTTCS---SSEEEEE-ECBTTBCHH--
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCC-CCHHHHHHHHHhhCC---CCEEEEE-ecCCcccHH--
Confidence 45689999999999999999999983 11111123221 345678888876543 2233221 134221121
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHh
Q 013195 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (448)
Q Consensus 294 el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~ 373 (448)
.+....+. + ...+++.+ +.++ .+...+.++.+++. |+.+...+.-. |.-+++.+.+.++.+.+
T Consensus 98 ~i~~a~~a-G-vd~v~I~~-~~s~-----------~~~~~~~i~~ak~~--G~~v~~~~~~a-~~~~~e~~~~ia~~~~~ 160 (345)
T 1nvm_A 98 DLKNAYQA-G-ARVVRVAT-HCTE-----------ADVSKQHIEYARNL--GMDTVGFLMMS-HMIPAEKLAEQGKLMES 160 (345)
T ss_dssp HHHHHHHH-T-CCEEEEEE-ETTC-----------GGGGHHHHHHHHHH--TCEEEEEEEST-TSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-C-cCEEEEEE-eccH-----------HHHHHHHHHHHHHC--CCEEEEEEEeC-CCCCHHHHHHHHHHHHH
Confidence 13333332 2 34555553 3332 25678889999999 99888777654 56678889999999999
Q ss_pred cCCCeEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHHHHH
Q 013195 374 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414 (448)
Q Consensus 374 l~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~ 414 (448)
.+.+.+.+ ++|--. ..+....+..+.+++..
T Consensus 161 ~Ga~~i~l------~DT~G~----~~P~~v~~lv~~l~~~~ 191 (345)
T 1nvm_A 161 YGATCIYM------ADSGGA----MSMNDIRDRMRAFKAVL 191 (345)
T ss_dssp HTCSEEEE------ECTTCC----CCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEE------CCCcCc----cCHHHHHHHHHHHHHhc
Confidence 98876554 333222 12455566666665543
No 32
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=81.26 E-value=18 Score=34.78 Aligned_cols=143 Identities=10% Similarity=0.087 Sum_probs=86.2
Q ss_pred cccCHHHHHHHHH-HHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHh---CCCCCcceEEEeecCCcChhHHHHH
Q 013195 219 GSYTVESLVGRVR-TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE---LPPDGSTMLRIGMTNPPFILEHLKE 294 (448)
Q Consensus 219 rsr~~e~Iv~ei~-~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~---~~~~~~~~iri~~~~p~~i~~~l~e 294 (448)
...+.++.++-++ .|.+.|+..|.+.+.-. +. .=.+.++++.+. +. .....++..+-+.. ..
T Consensus 36 ~~~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~---~~----~~~~~v~~~~~~~~~~~--~~~~~~i~~l~~~~--~~--- 101 (337)
T 3ble_A 36 VSFSTSEKLNIAKFLLQKLNVDRVEIASARV---SK----GELETVQKIMEWAATEQ--LTERIEILGFVDGN--KT--- 101 (337)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCSEEEEEETTS---CT----THHHHHHHHHHHHHHTT--CGGGEEEEEESSTT--HH---
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEeCCCC---Ch----hHHHHHHHHHhhhhhhc--cCCCCeEEEEccch--hh---
Confidence 4578999999999 99999999999865321 11 114566666552 11 11223343333321 12
Q ss_pred HHHHHhCCCcccccccccCCCCH-HHHHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCC---CCHHHHHHHH
Q 013195 295 IAEVLRHPCVYSFLHVPVQSGSD-AVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPG---ETDEDFNQTV 368 (448)
Q Consensus 295 l~~l~~~~~~~~~l~iglES~s~-~vLk~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~Pg---ET~ed~~~tl 368 (448)
+....+.+ ...+++-+ |.|+ ...+.+++. ...+.+.+.++.+++. |..+..++.. +|. -+.+.+.+.+
T Consensus 102 i~~a~~~g--~~~v~i~~-~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~--G~~v~~~~~~-~~~~~~~~~~~~~~~~ 175 (337)
T 3ble_A 102 VDWIKDSG--AKVLNLLT-KGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKS--GLKINVYLED-WSNGFRNSPDYVKSLV 175 (337)
T ss_dssp HHHHHHHT--CCEEEEEE-ECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHT--TCEEEEEEET-HHHHHHHCHHHHHHHH
T ss_pred HHHHHHCC--CCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEEE-CCCCCcCCHHHHHHHH
Confidence 33333322 35566655 3455 444666664 3567778888888999 9888877664 222 2456677777
Q ss_pred HHHHhcCCCeEEE
Q 013195 369 NLIKEYKFPQVHI 381 (448)
Q Consensus 369 ~~i~~l~~~~v~i 381 (448)
+.+.+++.+.+.+
T Consensus 176 ~~~~~~Ga~~i~l 188 (337)
T 3ble_A 176 EHLSKEHIERIFL 188 (337)
T ss_dssp HHHHTSCCSEEEE
T ss_pred HHHHHcCCCEEEE
Confidence 8888888876654
No 33
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=79.70 E-value=1 Score=42.32 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=42.8
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccccchhhhcCCccEEEcCC--chhHHHHHH
Q 013195 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ--QIDRVVEVV 162 (448)
Q Consensus 94 ~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e~~~~~~d~vvg~~--~~~~i~~~l 162 (448)
.+||+++|+..|+.+.+-.+ +++.. +....||+.|+.++..|++-+..++.+-|.. +.+.+.+.+
T Consensus 185 p~~D~viiTgstlvN~Tl~~---lL~~~-~~a~~vvl~GPStp~~P~lf~~Gv~~laG~~V~d~~~~~~~i 251 (270)
T 3l5o_A 185 PECDYVYITCASVVDKTLPR---LLELS-RNARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIV 251 (270)
T ss_dssp GGCSEEEEETHHHHHTCHHH---HHHHT-TTSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHH
T ss_pred ccCCEEEEEeehhhcCCHHH---HHhhC-CCCCEEEEECCCchhhHHHHhcCcCEEEEEEEcCHHHHHHHH
Confidence 57999999998998876544 44443 2345688999999999986555455544432 333444444
No 34
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=77.84 E-value=13 Score=36.44 Aligned_cols=145 Identities=10% Similarity=0.031 Sum_probs=81.0
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (448)
.+.+.++-++-++.|.+.|+..|.....- ... .=.+.++++.+..+ + ..+.. ...+. .+.++...+.
T Consensus 29 ~~~~~~~Kl~ia~~L~~~Gv~~IE~g~p~---~~~----~d~e~v~~i~~~~~--~-~~i~~-l~r~~--~~di~~a~~a 95 (370)
T 3rmj_A 29 AAMTKEEKIRVARQLEKLGVDIIEAGFAA---ASP----GDFEAVNAIAKTIT--K-STVCS-LSRAI--ERDIRQAGEA 95 (370)
T ss_dssp CCCCHHHHHHHHHHHHHHTCSEEEEEEGG---GCH----HHHHHHHHHHTTCS--S-SEEEE-EEESS--HHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEeCCC---CCH----HHHHHHHHHHHhCC--C-CeEEE-EecCC--HHHHHHHHHH
Confidence 46899999999999999999999875421 111 11456667665443 2 22221 11121 1222222233
Q ss_pred HhCCCcccccccccCCCCH-HHHHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 013195 299 LRHPCVYSFLHVPVQSGSD-AVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (448)
Q Consensus 299 ~~~~~~~~~l~iglES~s~-~vLk~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (448)
+...+ ...+++-+ |.|+ .+.+.+++. ...+.+.+.++.++++ |..+..+...+. --+.+.+.+.++.+.+.+
T Consensus 96 l~~ag-~~~v~if~-~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~~~~ed~~-r~~~~~~~~~~~~~~~~G 170 (370)
T 3rmj_A 96 VAPAP-KKRIHTFI-ATSPIHMEYKLKMKPKQVIEAAVKAVKIAREY--TDDVEFSCEDAL-RSEIDFLAEICGAVIEAG 170 (370)
T ss_dssp HTTSS-SEEEEEEE-ECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTT--CSCEEEEEETGG-GSCHHHHHHHHHHHHHHT
T ss_pred HhhCC-CCEEEEEe-cCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEecCCCC-ccCHHHHHHHHHHHHHcC
Confidence 33333 46777755 5555 344566653 2345555666777777 665443333222 234566677777788888
Q ss_pred CCeEEE
Q 013195 376 FPQVHI 381 (448)
Q Consensus 376 ~~~v~i 381 (448)
.+.+.+
T Consensus 171 a~~i~l 176 (370)
T 3rmj_A 171 ATTINI 176 (370)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 876654
No 35
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=77.34 E-value=2.1 Score=40.16 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=44.0
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccccchhhhcCCccEEEcCC--chhHHHHHH
Q 013195 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ--QIDRVVEVV 162 (448)
Q Consensus 94 ~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e~~~~~~d~vvg~~--~~~~i~~~l 162 (448)
.+||+++|+..|+.+.+-.. +++..+ ..+.+|+.|+.+...|++....++.+-|.. +.+.+.+.|
T Consensus 185 ~~aD~viiTGsTlvN~Ti~~---lL~~~~-~a~~vvl~GPS~p~~P~lf~~Gv~~l~G~~V~D~~~~~~~i 251 (270)
T 2h1q_A 185 PECDYVYITCASVVDKTLPR---LLELSR-NARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIV 251 (270)
T ss_dssp GGCSEEEEETHHHHHTCHHH---HHHHTT-TSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHH
T ss_pred hcCCEEEEEeeeeecCCHHH---HHHhCc-cCCeEEEEecChhhhHHHHhcCcCEEEEeEecCHHHHHHHH
Confidence 57999999998998876544 444443 445899999999999986555556554432 334444444
No 36
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=74.85 E-value=13 Score=35.59 Aligned_cols=144 Identities=12% Similarity=-0.018 Sum_probs=80.5
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (448)
.+.+.++-++-++.|.+.|++.|.... +.... .=.+.++++.+..+ + .. +..+-+.. .+.++...+.
T Consensus 23 ~~~~~~~Kl~ia~~L~~~Gv~~IE~g~---p~~~~----~d~e~v~~i~~~~~--~-~~--i~~l~r~~-~~~i~~a~~a 89 (325)
T 3eeg_A 23 CQLNTEEKIIVAKALDELGVDVIEAGF---PVSSP----GDFNSVVEITKAVT--R-PT--ICALTRAK-EADINIAGEA 89 (325)
T ss_dssp --CCTTHHHHHHHHHHHHTCSEEEEEC---TTSCH----HHHHHHHHHHHHCC--S-SE--EEEECCSC-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCH----hHHHHHHHHHHhCC--C-CE--EEEeecCC-HHHHHHHHHh
Confidence 467889999999999999999998853 21111 11345677766553 2 23 22222211 1222222333
Q ss_pred HhCCCcccccccccCCCCHHHH-HhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 013195 299 LRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (448)
Q Consensus 299 ~~~~~~~~~l~iglES~s~~vL-k~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (448)
+...+ ...+++-+ |.|+--. +.+++. ...+.+.+.++.+++. |..+..+...+.. -+.+.+.+.++.+.+.+
T Consensus 90 l~~ag-~~~v~i~~-s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~f~~~d~~~-~~~~~~~~~~~~~~~~G 164 (325)
T 3eeg_A 90 LRFAK-RSRIHTGI-GSSDIHIEHKLRSTRENILEMAVAAVKQAKKV--VHEVEFFCEDAGR-ADQAFLARMVEAVIEAG 164 (325)
T ss_dssp HTTCS-SEEEEEEE-ECSHHHHC----CCCTTGGGTTHHHHHHHHTT--SSEEEEEEETGGG-SCHHHHHHHHHHHHHHT
T ss_pred hcccC-CCEEEEEe-cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEcccccc-chHHHHHHHHHHHHhcC
Confidence 33333 45666644 4555433 445543 5778889999999998 8776433333321 34566667777777778
Q ss_pred CCeEE
Q 013195 376 FPQVH 380 (448)
Q Consensus 376 ~~~v~ 380 (448)
.+.+.
T Consensus 165 ~~~i~ 169 (325)
T 3eeg_A 165 ADVVN 169 (325)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 77554
No 37
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=72.30 E-value=14 Score=34.43 Aligned_cols=141 Identities=13% Similarity=0.042 Sum_probs=83.5
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (448)
+..+.+.+++.++.+.+.|..-|-+.++.. ..+...++..+++.+.+.. ...+.+.+.+|.-+. ...+.
T Consensus 29 ~~~~~~~a~~~a~~~v~~GAdiIDIg~~s~---~~eE~~rv~~vi~~l~~~~----~~pisIDT~~~~v~~----aal~a 97 (271)
T 2yci_X 29 LNKDPRPIQEWARRQAEKGAHYLDVNTGPT---ADDPVRVMEWLVKTIQEVV----DLPCCLDSTNPDAIE----AGLKV 97 (271)
T ss_dssp HTTCCHHHHHHHHHHHHTTCSEEEEECCSC---SSCHHHHHHHHHHHHHHHC----CCCEEEECSCHHHHH----HHHHH
T ss_pred hhCCHHHHHHHHHHHHHCCCCEEEEcCCcC---chhHHHHHHHHHHHHHHhC----CCeEEEeCCCHHHHH----HHHHh
Confidence 446779999999999999998887765431 1111134666777776643 356777766553211 11111
Q ss_pred HhCCCcccccccccCCCC--HHHHHhc----------C---CC--CC----HHHHHHHHHHHHHhCCCCE---EEEEEEE
Q 013195 299 LRHPCVYSFLHVPVQSGS--DAVLSAM----------N---RE--YT----LSDFRTVVDTLIELVPGMQ---IATDIIC 354 (448)
Q Consensus 299 ~~~~~~~~~l~iglES~s--~~vLk~m----------~---R~--~t----~e~~~~~i~~ir~~~pgi~---i~~~~Iv 354 (448)
.....+.+.++.. . + ++++... . ++ .+ .+.+.+.++.+.++ |+. +..|-.+
T Consensus 98 ~~Ga~iINdvs~~--~-d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~--Gi~~~~IilDPg~ 172 (271)
T 2yci_X 98 HRGHAMINSTSAD--Q-WKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAH--GIPMTELYIDPLI 172 (271)
T ss_dssp CCSCCEEEEECSC--H-HHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHT--TCCGGGEEEECCC
T ss_pred CCCCCEEEECCCC--c-cccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCcccEEEecCC
Confidence 1122233333322 1 2 3344321 1 22 23 45567778888888 875 8999999
Q ss_pred eCCCCCHHHHHHHHHHHHhcC
Q 013195 355 GFPGETDEDFNQTVNLIKEYK 375 (448)
Q Consensus 355 G~PgET~ed~~~tl~~i~~l~ 375 (448)
||.|-|.+.-.++++.++.++
T Consensus 173 gfigk~~~~~~~~l~~l~~~~ 193 (271)
T 2yci_X 173 LPVNVAQEHAVEVLETIRQIK 193 (271)
T ss_dssp CCTTTSTHHHHHHHHHHHHHT
T ss_pred CccccCHHHHHHHHHHHHHHH
Confidence 998888876666666666654
No 38
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=70.96 E-value=41 Score=33.46 Aligned_cols=142 Identities=11% Similarity=0.073 Sum_probs=84.3
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (448)
-.+.+.++-++-++.|.+.|++.|.... .... ....+.++.+.+. . ....+ +....+. .+ .+..
T Consensus 55 ~~~~s~eeKl~Ia~~L~~~Gv~~IEvG~---P~as----p~d~~~~~~i~~~-~--~~~~v-~~~~r~~--~~---di~~ 118 (423)
T 3ivs_A 55 NAFFDTEKKIQIAKALDNFGVDYIELTS---PVAS----EQSRQDCEAICKL-G--LKCKI-LTHIRCH--MD---DARV 118 (423)
T ss_dssp TCCCCHHHHHHHHHHHHHHTCSEEEECC---TTSC----HHHHHHHHHHHTS-C--CSSEE-EEEEESC--HH---HHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEee---cccC----HHHHHHHHHHHhc-C--CCCEE-EEeeccC--hh---hHHH
Confidence 3578999999999999999999999843 2221 1234566666642 2 11222 1112332 11 2333
Q ss_pred HHhCCCcccccccccCCCCHHHH-HhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 013195 298 VLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 298 l~~~~~~~~~l~iglES~s~~vL-k~m~R~--~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l 374 (448)
....+ ...+++-+ |.|+--. ..+++. ...+.+.+.++.+++. |+.+..+..-++ .-+++.+.+.++.+.+.
T Consensus 119 A~~aG--~~~V~i~~-s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~V~~~~eda~-r~d~~~~~~v~~~~~~~ 192 (423)
T 3ivs_A 119 AVETG--VDGVDVVI-GTSQYLRKYSHGKDMTYIIDSATEVINFVKSK--GIEVRFSSEDSF-RSDLVDLLSLYKAVDKI 192 (423)
T ss_dssp HHHTT--CSEEEEEE-EC-------------CHHHHHHHHHHHHHHTT--TCEEEEEEESGG-GSCHHHHHHHHHHHHHH
T ss_pred HHHcC--CCEEEEEe-eccHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEccCc-CCCHHHHHHHHHHHHHh
Confidence 33332 45677655 3444322 233332 3467788899999999 998888877776 45678888888989999
Q ss_pred CCCeEEE
Q 013195 375 KFPQVHI 381 (448)
Q Consensus 375 ~~~~v~i 381 (448)
+.+.+.+
T Consensus 193 Ga~~i~l 199 (423)
T 3ivs_A 193 GVNRVGI 199 (423)
T ss_dssp CCSEEEE
T ss_pred CCCcccc
Confidence 9876544
No 39
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=70.17 E-value=3.7 Score=38.04 Aligned_cols=66 Identities=14% Similarity=0.223 Sum_probs=43.9
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccccchhh-hcCCccEEEcC--CchhHHHHHHH
Q 013195 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDL-KELEGVSIVGV--QQIDRVVEVVE 163 (448)
Q Consensus 94 ~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e~-~~~~~d~vvg~--~~~~~i~~~l~ 163 (448)
.+||+++|+..|+.+.+-.. +++..+ ....+|+.|+.++..|++ ....++.+-|. .+.+.+.+.|.
T Consensus 163 ~~~D~v~iTGsTlvN~Ti~~---lL~~~~-~~~~vvl~GPS~~~~P~~~~~~Gv~~l~g~~v~d~~~~l~~i~ 231 (249)
T 3npg_A 163 PEVDGIIASASCIVNGTLDM---ILDRAK-KAKLIVITGPTGQLLPEFLKGTKVTHLASMKVTNIEKALVKLK 231 (249)
T ss_dssp GGCSEEEEETTHHHHTCHHH---HHHHCS-SCSEEEEESGGGCSCGGGGTTSSCCEEEEEEESCHHHHHHHHH
T ss_pred ccCCEEEEEeeeeccCCHHH---HHHhCc-ccCeEEEEecCchhhHHHHhhCCccEEEEEEecCHHHHHHHHH
Confidence 36999999988888876444 444443 344689999999999985 35556655443 23344555553
No 40
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=69.36 E-value=24 Score=33.16 Aligned_cols=139 Identities=16% Similarity=0.191 Sum_probs=80.0
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC------CCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~------~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~ 291 (448)
-+..+++.+++.++.+.+.|..-|-+.++.+.. |... ..++..+++.+.+.. ...+.+.+.+|.-+.
T Consensus 32 g~~~~~~~a~~~a~~~v~~GAdiIDIGgestrP-ga~~v~~~eE~~rv~pvi~~l~~~~----~~piSIDT~~~~va~-- 104 (282)
T 1aj0_A 32 GTHNSLIDAVKHANLMINAGATIIDVGGESTRP-GAAEVSVEEELQRVIPVVEAIAQRF----EVWISVDTSKPEVIR-- 104 (282)
T ss_dssp CCCTHHHHHHHHHHHHHHHTCSEEEEESSCCST-TCCCCCHHHHHHHHHHHHHHHHHHC----CCEEEEECCCHHHHH--
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-CCCcCCHHHHHHHHHHHHHHHHhhc----CCeEEEeCCCHHHHH--
Confidence 345678999999999999999988887654322 2111 123555666665542 356777765543211
Q ss_pred HHHHHHHHhC-CCcccccccccCCCCHHHHHh-------------------cCCC--CC------HHHHHHHHHHHHHhC
Q 013195 292 LKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSA-------------------MNRE--YT------LSDFRTVVDTLIELV 343 (448)
Q Consensus 292 l~el~~l~~~-~~~~~~l~iglES~s~~vLk~-------------------m~R~--~t------~e~~~~~i~~ir~~~ 343 (448)
+.++. ..+.+.++-+ .+++++.. |... |. .+.+.+.++.+.++
T Consensus 105 -----aAl~aGa~iINdvsg~---~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~- 175 (282)
T 1aj0_A 105 -----ESAKVGAHIINDIRSL---SEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQA- 175 (282)
T ss_dssp -----HHHHTTCCEEEETTTT---CSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHT-
T ss_pred -----HHHHcCCCEEEECCCC---CCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHc-
Confidence 11111 1122222221 22233221 2111 11 56778888889988
Q ss_pred CCCE---EEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 013195 344 PGMQ---IATDIICGFPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 344 pgi~---i~~~~IvG~PgET~ed~~~tl~~i~~l 374 (448)
|+. +..|--+|| +.|.++-.++++.+.++
T Consensus 176 -Gi~~~~IilDPg~gf-~k~~~~n~~ll~~l~~~ 207 (282)
T 1aj0_A 176 -GIAKEKLLLDPGFGF-GKNLSHNYSLLARLAEF 207 (282)
T ss_dssp -TCCGGGEEEECCTTS-SCCHHHHHHHHHTGGGG
T ss_pred -CCChhhEEEeCCCCc-ccCHHHHHHHHHHHHHH
Confidence 875 888988898 77877655555555544
No 41
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=62.57 E-value=61 Score=30.63 Aligned_cols=124 Identities=11% Similarity=0.111 Sum_probs=69.3
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCC----cChh--HHHH
Q 013195 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP----PFIL--EHLK 293 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p----~~i~--~~l~ 293 (448)
.++.+++.+.+..+.+.|++.|..+.+|....+......-.+|++.|.+. +...+.+. .+| ..-+ .++.
T Consensus 93 ~~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~----~~f~IgvA-~yPE~Hp~a~~~~~d~~ 167 (304)
T 3fst_A 93 DATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEV----ADFDISVA-AYPEVHPEAKSAQADLL 167 (304)
T ss_dssp TSCHHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHH----CCCEEEEE-ECTTCCTTCSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEE-eCCCcCCCCCCHHHHHH
Confidence 46788899999999999999998876666544321124567888877654 23344443 233 2111 1222
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeC-CCCCHHHHHHH
Q 013195 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQT 367 (448)
Q Consensus 294 el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~-PgET~ed~~~t 367 (448)
.|.+-.+.+ ..++ .| .=-|+.+.+.+.++.+++. |+. .-+|.|+ |=-+...+...
T Consensus 168 ~Lk~KvdAG--Adf~----iT---------Q~ffD~~~~~~f~~~~r~~--Gi~--vPIi~GImPi~s~~~~~~~ 223 (304)
T 3fst_A 168 NLKRKVDAG--ANRA----IT---------QFFFDVESYLRFRDRCVSA--GID--VEIIPGILPVSNFKQAKKL 223 (304)
T ss_dssp HHHHHHHHT--CCEE----EE---------CCCSCHHHHHHHHHHHHHT--TCC--SCEECEECCCSCHHHHHHH
T ss_pred HHHHHHHcC--CCEE----Ee---------CccCCHHHHHHHHHHHHhc--CCC--CcEEEEecccCCHHHHHHH
Confidence 222211111 1111 01 1236889999999999998 764 3567775 44555554443
No 42
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=62.33 E-value=96 Score=31.19 Aligned_cols=136 Identities=8% Similarity=0.117 Sum_probs=81.0
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEecCCC-----CCCCCCCCCHHHHHHHHHHhCCCCCcceEEEee--c-------CC
Q 013195 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTG-----AYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM--T-------NP 285 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~-----~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~--~-------~p 285 (448)
..+.++.++-++.|.+.|+..|...+.-.+ ..+ ..-.+.++.+.+.++ + ..+.... . .|
T Consensus 26 ~~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~----~d~~e~l~~i~~~~~--~-~~l~~l~R~~N~~G~~~~~ 98 (464)
T 2nx9_A 26 RLRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLG----EDPWQRLRLLKQAMP--N-TPLQMLLRGQNLLGYRHYA 98 (464)
T ss_dssp CCCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTC----CCHHHHHHHHHHHCS--S-SCEEEEECGGGTTSSSCCC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccC----CCHHHHHHHHHHhCC--C-CeEEEEeccccccCccccc
Confidence 456777788888888889999998764221 011 234677888876554 2 2222111 0 12
Q ss_pred cChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEE--EEeCCCCCHHH
Q 013195 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI--ICGFPGETDED 363 (448)
Q Consensus 286 ~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~--IvG~PgET~ed 363 (448)
+++.+.. +......+ ...+++-. +.|+ .+.+.++++.+++. |..+..++ ..|.+ -+.+.
T Consensus 99 ddv~~~~--v~~a~~~G--vd~i~if~-~~sd-----------~~ni~~~i~~ak~~--G~~v~~~i~~~~~~~-~~~e~ 159 (464)
T 2nx9_A 99 DDVVDTF--VERAVKNG--MDVFRVFD-AMND-----------VRNMQQALQAVKKM--GAHAQGTLCYTTSPV-HNLQT 159 (464)
T ss_dssp HHHHHHH--HHHHHHTT--CCEEEECC-TTCC-----------THHHHHHHHHHHHT--TCEEEEEEECCCCTT-CCHHH
T ss_pred chhhHHH--HHHHHhCC--cCEEEEEE-ecCH-----------HHHHHHHHHHHHHC--CCEEEEEEEeeeCCC-CCHHH
Confidence 2222211 33333332 34444422 3333 25678899999999 88777666 44544 47888
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 013195 364 FNQTVNLIKEYKFPQVHI 381 (448)
Q Consensus 364 ~~~tl~~i~~l~~~~v~i 381 (448)
+.+.++.+.+.+.+.+.+
T Consensus 160 ~~~~a~~l~~~Gad~I~l 177 (464)
T 2nx9_A 160 WVDVAQQLAELGVDSIAL 177 (464)
T ss_dssp HHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHCCCCEEEE
Confidence 888888899998876654
No 43
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=62.27 E-value=1e+02 Score=31.68 Aligned_cols=140 Identities=12% Similarity=0.097 Sum_probs=82.8
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCC-CCCCCCHHHHHHHHHHhCCCCCcceEEEee--------c-CCcChh
Q 013195 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGSTMLRIGM--------T-NPPFIL 289 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg-~d~~~~l~~ll~~l~~~~~~~~~~~iri~~--------~-~p~~i~ 289 (448)
..+.++.++-++.|.+.|+..|...+.-.+... +-....-.+.++.+.+.++ + ..+.... . .|+++.
T Consensus 43 ~~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl~~d~~e~lr~l~~~~~--~-~~l~~L~R~~N~~G~~~ypddv~ 119 (539)
T 1rqb_A 43 RMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMP--N-SRLQMLLRGQNLLGYRHYNDEVV 119 (539)
T ss_dssp CCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCT--T-SCEEEEECGGGTTSSSCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcccccccchhccCCCHHHHHHHHHHhCC--C-CEEEEEeccccccCcccCccccc
Confidence 467888888888999999999998764221000 0001233677888876554 2 2222211 0 122222
Q ss_pred HHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEE--EEeCCCCCHHHHHHH
Q 013195 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI--ICGFPGETDEDFNQT 367 (448)
Q Consensus 290 ~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~--IvG~PgET~ed~~~t 367 (448)
+.. +..+...+ ...+++-. +.|+ .+.+.+.++.+++. |..+.+.+ ..|.+ -+.+.+.+.
T Consensus 120 ~~~--ve~a~~aG--vd~vrIf~-s~sd-----------~~ni~~~i~~ak~~--G~~v~~~i~~~~~~~-~~~e~~~~~ 180 (539)
T 1rqb_A 120 DRF--VDKSAENG--MDVFRVFD-AMND-----------PRNMAHAMAAVKKA--GKHAQGTICYTISPV-HTVEGYVKL 180 (539)
T ss_dssp HHH--HHHHHHTT--CCEEEECC-TTCC-----------THHHHHHHHHHHHT--TCEEEEEEECCCSTT-CCHHHHHHH
T ss_pred HHH--HHHHHhCC--CCEEEEEE-ehhH-----------HHHHHHHHHHHHHC--CCeEEEEEEeeeCCC-CCHHHHHHH
Confidence 221 33333332 34444422 3333 25678999999999 88776555 44544 478888889
Q ss_pred HHHHHhcCCCeEEE
Q 013195 368 VNLIKEYKFPQVHI 381 (448)
Q Consensus 368 l~~i~~l~~~~v~i 381 (448)
++.+.+.+.+.+.+
T Consensus 181 a~~l~~~Gad~I~L 194 (539)
T 1rqb_A 181 AGQLLDMGADSIAL 194 (539)
T ss_dssp HHHHHHTTCSEEEE
T ss_pred HHHHHHcCCCEEEe
Confidence 99999999876654
No 44
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=61.72 E-value=96 Score=28.29 Aligned_cols=133 Identities=13% Similarity=0.162 Sum_probs=77.1
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEE--EEEecCC---CCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEV--WLSSEDT---GAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei--~~~~~~~---~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l 292 (448)
.-+.+..++-++++.+.+.|+..+ -+.+..+ .++| ..++++|.+..+. -..-..+...+|.. ..
T Consensus 34 ilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G-------~~~v~~lr~~~p~-~~ldvHLmv~~p~~---~i 102 (246)
T 3inp_A 34 ILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFG-------PMVLKALRDYGIT-AGMDVHLMVKPVDA---LI 102 (246)
T ss_dssp GGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCC-------HHHHHHHHHHTCC-SCEEEEEECSSCHH---HH
T ss_pred hhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcC-------HHHHHHHHHhCCC-CeEEEEEeeCCHHH---HH
Confidence 456677788899999999888754 4555443 2333 5788888776520 22344554446642 22
Q ss_pred HHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHH
Q 013195 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 372 (448)
Q Consensus 293 ~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~ 372 (448)
+.+.+ . + +..+++..|+.. +..+.++.++++ |+.+...+- |+...+.++..+ .
T Consensus 103 ~~~~~---a-G-Ad~itvH~Ea~~--------------~~~~~i~~ir~~--G~k~Gvaln---p~Tp~e~l~~~l---~ 155 (246)
T 3inp_A 103 ESFAK---A-G-ATSIVFHPEASE--------------HIDRSLQLIKSF--GIQAGLALN---PATGIDCLKYVE---S 155 (246)
T ss_dssp HHHHH---H-T-CSEEEECGGGCS--------------CHHHHHHHHHTT--TSEEEEEEC---TTCCSGGGTTTG---G
T ss_pred HHHHH---c-C-CCEEEEccccch--------------hHHHHHHHHHHc--CCeEEEEec---CCCCHHHHHHHH---h
Confidence 22222 2 2 567888888753 256788888998 987766544 443333332222 2
Q ss_pred hcCCCeEEEEeceeCCCCcc
Q 013195 373 EYKFPQVHISQFYPRPGTPA 392 (448)
Q Consensus 373 ~l~~~~v~i~~~~p~pGT~~ 392 (448)
.+|.+ ..++..||..-
T Consensus 156 --~vD~V--lvMsV~PGfgG 171 (246)
T 3inp_A 156 --NIDRV--LIMSVNPGFGG 171 (246)
T ss_dssp --GCSEE--EEECSCTTC--
T ss_pred --cCCEE--EEeeecCCCCC
Confidence 25654 44567788744
No 45
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=61.56 E-value=1.1e+02 Score=29.68 Aligned_cols=140 Identities=8% Similarity=0.081 Sum_probs=81.8
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (448)
.+.+.++.++-++.|.+.|+..|.... .... ....+.++.+.+... . ..+....... .+. +...
T Consensus 20 ~~~~~~~k~~ia~~L~~~Gv~~IE~g~---p~~~----~~~~~~~~~i~~~~~---~--~~v~~~~r~~-~~d---i~~a 83 (382)
T 2ztj_A 20 ANFSTQDKVEIAKALDEFGIEYIEVTT---PVAS----PQSRKDAEVLASLGL---K--AKVVTHIQCR-LDA---AKVA 83 (382)
T ss_dssp CCCCHHHHHHHHHHHHHHTCSEEEECC---TTSC----HHHHHHHHHHHTSCC---S--SEEEEEEESC-HHH---HHHH
T ss_pred CCcCHHHHHHHHHHHHHcCcCEEEEcC---CcCC----HHHHHHHHHHHhcCC---C--cEEEEEcccC-hhh---HHHH
Confidence 467899999999999999999999843 1111 223566677765321 1 2222221111 111 3333
Q ss_pred HhCCCcccccccccCCCCHHHHHhcCCCC--CHHHHHHHHHHHHHhCCC--CEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 013195 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREY--TLSDFRTVVDTLIELVPG--MQIATDIICGFPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 299 ~~~~~~~~~l~iglES~s~~vLk~m~R~~--t~e~~~~~i~~ir~~~pg--i~i~~~~IvG~PgET~ed~~~tl~~i~~l 374 (448)
.+.+ ...+++-+ |.|+-..+.+++.. ..+.+.+.++.+++. | +.+..++.-++ .-+.+.+.+.++.+.+.
T Consensus 84 ~~~g--~~~v~i~~-~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~--g~~~~v~~~~ed~~-~~~~~~~~~~~~~~~~~ 157 (382)
T 2ztj_A 84 VETG--VQGIDLLF-GTSKYLRAPHGRDIPRIIEEAKEVIAYIREA--APHVEVRFSAEDTF-RSEEQDLLAVYEAVAPY 157 (382)
T ss_dssp HHTT--CSEEEEEE-CC--------CCCHHHHHHHHHHHHHHHHHH--CTTSEEEEEETTTT-TSCHHHHHHHHHHHGGG
T ss_pred HHcC--CCEEEEEe-ccCHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCCEEEEEEEEeCC-CCCHHHHHHHHHHHHHh
Confidence 3332 45666655 55664444333321 235678889999999 8 88888877654 45677888888888888
Q ss_pred CCCeEEE
Q 013195 375 KFPQVHI 381 (448)
Q Consensus 375 ~~~~v~i 381 (448)
.+.+.+
T Consensus 158 -a~~i~l 163 (382)
T 2ztj_A 158 -VDRVGL 163 (382)
T ss_dssp -CSEEEE
T ss_pred -cCEEEe
Confidence 776554
No 46
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=60.53 E-value=25 Score=33.30 Aligned_cols=141 Identities=13% Similarity=0.177 Sum_probs=79.4
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC--C---CCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--G---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~--~---~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~ 293 (448)
+..+++.+++.++.+.+.|..-|-+.++.+....... . .++..+++++.+.. ...+.+.+.+|.-+..
T Consensus 58 ~~~~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~----~vpiSIDT~~~~V~~a--- 130 (297)
T 1tx2_A 58 SYNEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV----KLPISIDTYKAEVAKQ--- 130 (297)
T ss_dssp BHHHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS----CSCEEEECSCHHHHHH---
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC----CceEEEeCCCHHHHHH---
Confidence 3456899999999999999998888765432211111 1 12344446665543 3567777665532211
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhc---C--------CCC-C--------HHHHHHHHHHHHHhCCCCE---EEE
Q 013195 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---N--------REY-T--------LSDFRTVVDTLIELVPGMQ---IAT 350 (448)
Q Consensus 294 el~~l~~~~~~~~~l~iglES~s~~vLk~m---~--------R~~-t--------~e~~~~~i~~ir~~~pgi~---i~~ 350 (448)
..+. ...+.+.++.+ ..+++++..+ + ++. . .+.+.+.++.+.++ |+. +..
T Consensus 131 -Al~a--Ga~iINdvsg~--~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~~~--GI~~~~Iil 203 (297)
T 1tx2_A 131 -AIEA--GAHIINDIWGA--KAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDA--GVRDENIIL 203 (297)
T ss_dssp -HHHH--TCCEEEETTTT--SSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHT--TCCGGGEEE
T ss_pred -HHHc--CCCEEEECCCC--CCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHHc--CCChhcEEE
Confidence 1111 22333443322 2355555332 1 111 0 35667788888888 875 888
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhc
Q 013195 351 DIICGFPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 351 ~~IvG~PgET~ed~~~tl~~i~~l 374 (448)
|--+|| +-|.++-.++++.+..+
T Consensus 204 DPg~Gf-gk~~~~n~~ll~~l~~l 226 (297)
T 1tx2_A 204 DPGIGF-AKTPEQNLEAMRNLEQL 226 (297)
T ss_dssp ECCTTS-SCCHHHHHHHHHTGGGG
T ss_pred eCCCCc-CCCHHHHHHHHHHHHHH
Confidence 988888 77877655555555544
No 47
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=55.37 E-value=63 Score=24.86 Aligned_cols=102 Identities=13% Similarity=0.139 Sum_probs=55.0
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhcC--C
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--K 125 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~--~ 125 (448)
+++.++. -+....+.+...|++.||.+... ....|+|+++...-. .....+++++++. +
T Consensus 8 ~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~----~~g~~~~~~l~~~~~~ 79 (130)
T 3eod_A 8 KQILIVE----DEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR----MNGLKLLEHIRNRGDQ 79 (130)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC---------CHHHHHHHHHTTCC
T ss_pred CeEEEEe----CCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCC----CCHHHHHHHHHhcCCC
Confidence 4565553 46677788999999999987532 345799999643221 1234455555544 3
Q ss_pred CCE-EEEccccccch-hhhcCCcc-EEEcCC-chhHHHHHHHHHhcC
Q 013195 126 KPL-VVAGCVPQGSR-DLKELEGV-SIVGVQ-QIDRVVEVVEETLKG 168 (448)
Q Consensus 126 ~~v-VvgGc~a~~~~-e~~~~~~d-~vvg~~-~~~~i~~~l~~~~~g 168 (448)
.+| ++++....... +.....++ ++.-+- ....+...++....+
T Consensus 80 ~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 80 TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp CCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred CCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 454 45554321111 11123344 455554 566788888776654
No 48
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=53.82 E-value=64 Score=30.14 Aligned_cols=138 Identities=15% Similarity=0.160 Sum_probs=73.4
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCC---CCCCCH---HHHHHHHHHhCCCCCcceEEEeecCCcChhHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNL---PILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~---d~~~~l---~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l 292 (448)
+..+++.+++.++.+.+.|..-|-+.++.+.. |. +....+ ..+++.+.+. ...+.+.+.+|.-+
T Consensus 24 ~~~~~~~a~~~a~~~v~~GAdiIDIGgestrp-ga~~v~~~eE~~Rv~pvi~~l~~~-----~~piSIDT~~~~va---- 93 (280)
T 1eye_A 24 CYLDLDDAVKHGLAMAAAGAGIVDVGGESSRP-GATRVDPAVETSRVIPVVKELAAQ-----GITVSIDTMRADVA---- 93 (280)
T ss_dssp CCCSHHHHHHHHHHHHHTTCSEEEEECC---------------HHHHHHHHHHHHHT-----TCCEEEECSCHHHH----
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCccCCC-CCCCCCHHHHHHHHHHHHHHhhcC-----CCEEEEeCCCHHHH----
Confidence 45689999999999999999988887654322 21 111233 4444454431 34567766554311
Q ss_pred HHHHHHHhC-CCcccccccccCCCCHHHHHh-------------------cCCC---C-C-----HHHHHHHHHHHHHhC
Q 013195 293 KEIAEVLRH-PCVYSFLHVPVQSGSDAVLSA-------------------MNRE---Y-T-----LSDFRTVVDTLIELV 343 (448)
Q Consensus 293 ~el~~l~~~-~~~~~~l~iglES~s~~vLk~-------------------m~R~---~-t-----~e~~~~~i~~ir~~~ 343 (448)
.+.++. ..+.+.++-+ ..+++++.. |.+. | + .+.+.+.++.+.++
T Consensus 94 ---~aAl~aGa~iINdvsg~--~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~~- 167 (280)
T 1eye_A 94 ---RAALQNGAQMVNDVSGG--RADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAA- 167 (280)
T ss_dssp ---HHHHHTTCCEEEETTTT--SSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHT-
T ss_pred ---HHHHHcCCCEEEECCCC--CCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHHc-
Confidence 111111 1122222211 123333322 2111 1 1 55677888888888
Q ss_pred CCCE---EEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 013195 344 PGMQ---IATDIICGFPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 344 pgi~---i~~~~IvG~PgET~ed~~~tl~~i~~l 374 (448)
|+. +..|=-+|| +.|.++-.++++-+.++
T Consensus 168 -Gi~~~~IilDPg~Gf-~k~~~~n~~ll~~l~~~ 199 (280)
T 1eye_A 168 -GVDPARLVLDPGLGF-AKTAQHNWAILHALPEL 199 (280)
T ss_dssp -TCCGGGEEEECCTTS-SCCHHHHHHHHHTHHHH
T ss_pred -CCChhhEEEECCCCc-ccCHHHHHHHHHHHHHh
Confidence 875 888888898 56766655666555544
No 49
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=53.62 E-value=66 Score=24.78 Aligned_cols=103 Identities=9% Similarity=0.052 Sum_probs=58.6
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhcC---
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--- 124 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~--- 124 (448)
++|.++ .-+....+.+...|++.||.+... ....|+|+++...-... ..++++++++.
T Consensus 7 ~~iliv----dd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~----g~~~~~~l~~~~~~ 78 (132)
T 3lte_A 7 KRILVV----DDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLD----GLDVIRSLRQNKVA 78 (132)
T ss_dssp CEEEEE----CSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBC----HHHHHHHHHTTTCS
T ss_pred ccEEEE----ECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCC----HHHHHHHHHhcCcc
Confidence 355554 346677788899999999987532 24579999965432222 24455556543
Q ss_pred -CCCEEEEccccccch-hhhcCCcc-EEEcCCchhHHHHHHHHHhcCC
Q 013195 125 -KKPLVVAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (448)
Q Consensus 125 -~~~vVvgGc~a~~~~-e~~~~~~d-~vvg~~~~~~i~~~l~~~~~g~ 169 (448)
.++|++..-...... +.....++ ++.-+-....+.+.|+....+.
T Consensus 79 ~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 79 NQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp SCCEEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred CCCeEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 245665543332211 11123344 5666667778888887766543
No 50
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=52.63 E-value=81 Score=24.65 Aligned_cols=93 Identities=11% Similarity=0.127 Sum_probs=54.3
Q ss_pred cChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhcC--CCCEE-EEcccc
Q 013195 70 HNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLV-VAGCVP 135 (448)
Q Consensus 70 ~N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~--~~~vV-vgGc~a 135 (448)
-+....+.+...|++.||++... ....|+++++. .... ....+++++++. +.+|| +++- .
T Consensus 12 d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~--~~~~---~g~~~~~~l~~~~~~~pii~ls~~-~ 85 (142)
T 2qxy_A 12 ESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV--FEGE---ESLNLIRRIREEFPDTKVAVLSAY-V 85 (142)
T ss_dssp SCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC--TTTH---HHHHHHHHHHHHCTTCEEEEEESC-C
T ss_pred CCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC--CCCC---cHHHHHHHHHHHCCCCCEEEEECC-C
Confidence 45667788889999899987532 34589999976 3221 234455555443 44555 4443 2
Q ss_pred ccchh--hhcCCc-cEEEcCCchhHHHHHHHHHhcC
Q 013195 136 QGSRD--LKELEG-VSIVGVQQIDRVVEVVEETLKG 168 (448)
Q Consensus 136 ~~~~e--~~~~~~-d~vvg~~~~~~i~~~l~~~~~g 168 (448)
..... .....+ +++.-+-....+...|.....+
T Consensus 86 ~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 86 DKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp CHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhh
Confidence 21111 112233 4666666777888888776654
No 51
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=51.36 E-value=74 Score=24.83 Aligned_cols=104 Identities=15% Similarity=0.144 Sum_probs=59.1
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhcC--C
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--K 125 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~--~ 125 (448)
.+|.|+ .-+....+.+...|++.||++... ....|+|++..- .-... ....++++++++. +
T Consensus 7 ~~iliv----dd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~-l~~~~-~~g~~~~~~l~~~~~~ 80 (136)
T 3kto_A 7 PIIYLV----DHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAH-LEDKK-DSGIELLETLVKRGFH 80 (136)
T ss_dssp CEEEEE----CSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETT-GGGBT-THHHHHHHHHHHTTCC
T ss_pred CeEEEE----cCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCc-CCCCC-ccHHHHHHHHHhCCCC
Confidence 455554 346667788899999999987532 345799999543 22200 1234556666554 3
Q ss_pred CCE-EEEccccccch-hhhcCCcc-EEEcCCchhHHHHHHHHHhcC
Q 013195 126 KPL-VVAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKG 168 (448)
Q Consensus 126 ~~v-VvgGc~a~~~~-e~~~~~~d-~vvg~~~~~~i~~~l~~~~~g 168 (448)
.+| ++++....... +.....++ ++.-+-....+...|+....+
T Consensus 81 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 81 LPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp CCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhc
Confidence 454 45554322111 11133344 566676777788888776544
No 52
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=50.90 E-value=23 Score=32.83 Aligned_cols=76 Identities=9% Similarity=0.176 Sum_probs=42.5
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhcCC-
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK- 125 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~- 125 (448)
|+++-|+. | ..-...+..+...|++.||+++-. ..+.|+||+....-..-.... .+.++++-+.|
T Consensus 4 m~~vLiV~-g-~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~d~~~~~l~~~~-~~~L~~yV~~GG 80 (259)
T 3rht_A 4 MTRVLYCG-D-TSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILSDYPAERMTAQA-IDQLVTMVKAGC 80 (259)
T ss_dssp --CEEEEE-S-SCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEESCCGGGBCHHH-HHHHHHHHHTTC
T ss_pred CceEEEEC-C-CCchhHHHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEcCCccccCCHHH-HHHHHHHHHhCC
Confidence 56777762 1 112346688999999999987431 236799998532211112222 33344443444
Q ss_pred CCEEEEccccc
Q 013195 126 KPLVVAGCVPQ 136 (448)
Q Consensus 126 ~~vVvgGc~a~ 136 (448)
..|++||....
T Consensus 81 gLi~~gG~~s~ 91 (259)
T 3rht_A 81 GLVMLGGWESY 91 (259)
T ss_dssp EEEEECSTTSS
T ss_pred eEEEecCcccc
Confidence 56778887653
No 53
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=50.38 E-value=2.6 Score=36.93 Aligned_cols=73 Identities=19% Similarity=0.355 Sum_probs=30.5
Q ss_pred eEEEEecCCccChhHHHHHHH-----HHHhCCC-eeecCCCCCcEEEEeecccccchHHHHHHHHHHHh-cCCCCEEEEc
Q 013195 60 TIYMKTFGCSHNQSDSEYMAG-----QLSAFGY-ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-SAKKPLVVAG 132 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~-----~L~~~G~-~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~-~~~~~vVvgG 132 (448)
.+++.++||. =.+-|.|+. .|...|. .....+..||+.+| +=+++.+....+ +.+.+.. +....|.+|-
T Consensus 35 slW~~~~gc~--cC~iEll~~~~p~yDl~rfGi~~~~aSPrqaDiliV-eG~Vt~~m~~~l-~~~~e~~p~pk~VIAvGs 110 (181)
T 3i9v_6 35 SLWPATFGLA--CCAIEMMASTDARNDLARFGSEVFRASPRQADVMIV-AGRLSKKMAPVM-RRVWEQMPDPKWVISMGA 110 (181)
T ss_dssp SCCCEEEECS--THHHHHTTTTTTC----------------CCCCEEE-ESCCBTTTHHHH-HHHHHSSCSSCCEEEEHH
T ss_pred CcccccCCCC--chHHHHHHhhhchhhHHHcCcccccCCCCCceEEEE-eccCCcccHHHH-HHHHHHcCCCceEEEeec
Confidence 4666677763 223222221 1445566 44566789999999 667876643332 2233322 2222344776
Q ss_pred cccc
Q 013195 133 CVPQ 136 (448)
Q Consensus 133 c~a~ 136 (448)
|...
T Consensus 111 CA~~ 114 (181)
T 3i9v_6 111 CASS 114 (181)
T ss_dssp HHHS
T ss_pred cccc
Confidence 6443
No 54
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=49.21 E-value=80 Score=24.36 Aligned_cols=96 Identities=7% Similarity=0.041 Sum_probs=54.8
Q ss_pred cChhHHHHHHHHHHhCCCeee---cCC---------CCCcEEEEeecccccchHHHHHHHHHHHhcC--CCCEE-EEccc
Q 013195 70 HNQSDSEYMAGQLSAFGYALT---DNS---------EEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLV-VAGCV 134 (448)
Q Consensus 70 ~N~~dse~~~~~L~~~G~~~~---~~~---------~~aDvv~intctv~~~a~~~~~~~i~~~~~~--~~~vV-vgGc~ 134 (448)
-|....+.+...|++.||.++ .+. ...|+|+++...-... ..++++++++. +.+|| +++..
T Consensus 9 d~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~----g~~~~~~l~~~~~~~~ii~~s~~~ 84 (134)
T 3f6c_A 9 DHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN----GIQVLETLRKRQYSGIIIIVSAKN 84 (134)
T ss_dssp CCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSC----HHHHHHHHHHTTCCSEEEEEECC-
T ss_pred CCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCC----hHHHHHHHHhcCCCCeEEEEeCCC
Confidence 356667888999999998875 222 3469999965332212 23445555544 34444 55533
Q ss_pred cccchh-hhcCCcc-EEEcCCchhHHHHHHHHHhcCC
Q 013195 135 PQGSRD-LKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (448)
Q Consensus 135 a~~~~e-~~~~~~d-~vvg~~~~~~i~~~l~~~~~g~ 169 (448)
...... .....++ ++.-+-....+.+.++....+.
T Consensus 85 ~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 121 (134)
T 3f6c_A 85 DHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 121 (134)
T ss_dssp --CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 222221 2233444 5666666678888888777664
No 55
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=47.56 E-value=1e+02 Score=28.89 Aligned_cols=142 Identities=17% Similarity=0.197 Sum_probs=74.4
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC---CCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~---~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el 295 (448)
+..+++.+++.++.+.+.|..-|-+-++.+.. |... ...+..++..+...-. ....+.+.+.+|.-+..-+
T Consensus 41 ~~~~~~~a~~~a~~~v~~GAdiIDIGgeSTrP-ga~~v~~~eE~~Rv~pvi~~l~~--~~vpiSIDT~~~~Va~aAl--- 114 (294)
T 2y5s_A 41 RFLARDDALRRAERMIAEGADLLDIGGESTRP-GAPPVPLDEELARVIPLVEALRP--LNVPLSIDTYKPAVMRAAL--- 114 (294)
T ss_dssp ---CTTHHHHHHHHHHHTTCSEEEEESSCCST-TCCCCCHHHHHHHHHHHHHHHGG--GCSCEEEECCCHHHHHHHH---
T ss_pred CcCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-CCCCCCHHHHHHHHHHHHHHHhh--CCCeEEEECCCHHHHHHHH---
Confidence 44578999999999999999988887654322 2211 1123333333322111 1346777766654221111
Q ss_pred HHHHhCCCcccccccccCCCCHHHHHhcCC----------------------CCC------HHHHHHHHHHHHHhCCCCE
Q 013195 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNR----------------------EYT------LSDFRTVVDTLIELVPGMQ 347 (448)
Q Consensus 296 ~~l~~~~~~~~~l~iglES~s~~vLk~m~R----------------------~~t------~e~~~~~i~~ir~~~pgi~ 347 (448)
+ ....+.+-++-+ . +++++....+ .|. .+.+.+.++.+.++ |+.
T Consensus 115 -~--aGa~iINdVsg~--~-d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~~--Gi~ 186 (294)
T 2y5s_A 115 -A--AGADLINDIWGF--R-QPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRDA--GVA 186 (294)
T ss_dssp -H--HTCSEEEETTTT--C-STTHHHHHSSSSCEEEEECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHHT--TCC
T ss_pred -H--cCCCEEEECCCC--C-chHHHHHHHHhCCCEEEECCCCCCccccccCCccccHHHHHHHHHHHHHHHHHHc--CCC
Confidence 1 111222333221 1 3333322211 011 45667788888888 875
Q ss_pred ---EEEEEEEeCCCCCH-HHHHHHHHHHHhcC
Q 013195 348 ---IATDIICGFPGETD-EDFNQTVNLIKEYK 375 (448)
Q Consensus 348 ---i~~~~IvG~PgET~-ed~~~tl~~i~~l~ 375 (448)
+..|--+|| +.|. ++-.++++-+.+++
T Consensus 187 ~~~IilDPG~Gf-~kt~~~~n~~ll~~l~~l~ 217 (294)
T 2y5s_A 187 AERICVDPGFGF-GKAVVDDNYALLAALPDTA 217 (294)
T ss_dssp GGGEEEECCTTS-SSCTTHHHHHHHHTGGGGS
T ss_pred hhhEEEeCCCcc-cccchHHHHHHHHHHHHHH
Confidence 888888888 5665 55555555555554
No 56
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=45.86 E-value=64 Score=30.39 Aligned_cols=138 Identities=18% Similarity=0.231 Sum_probs=68.3
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCC---CCCCC---HHHHHHHHHHhCCCCCcceEEEeecCCcChhHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR---DIGVN---LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~---d~~~~---l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l 292 (448)
++.+.+.+++.++.+.+.|..-|-+-++.+.. |. +.... +..+++.+.+. ...+.+.+.+|.-+..-+
T Consensus 47 ~~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrP-ga~~v~~~eE~~Rv~pvI~~l~~~-----~vpiSIDT~~~~Va~aAl 120 (294)
T 2dqw_A 47 RYLDPERALERAREMVAEGADILDLGAESTRP-GAAPVPVEEEKRRLLPVLEAVLSL-----GVPVSVDTRKPEVAEEAL 120 (294)
T ss_dssp ------CCHHHHHHHHHHTCSEEEEECC------------CCHHHHHHHHHHHHHTT-----CSCEEEECSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-CCCCCCHHHHHHHHHHHHHHHHhC-----CCeEEEECCCHHHHHHHH
Confidence 44578999999999999999988887654322 21 11223 34444444421 346777765543221111
Q ss_pred HHHHHHHhCCCcccccccccCCCCHHHHHh--------------------cCC--CCC------HHHHHHHHHHHHHhCC
Q 013195 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSA--------------------MNR--EYT------LSDFRTVVDTLIELVP 344 (448)
Q Consensus 293 ~el~~l~~~~~~~~~l~iglES~s~~vLk~--------------------m~R--~~t------~e~~~~~i~~ir~~~p 344 (448)
+. ...+.+-++-+ .+++++.. |.+ .|. .+.+.+.++.+.++
T Consensus 121 ----~a--Ga~iINdVsg~---~d~~m~~v~a~~~~~vVlmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~-- 189 (294)
T 2dqw_A 121 ----KL--GAHLLNDVTGL---RDERMVALAARHGVAAVVMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALSA-- 189 (294)
T ss_dssp ----HH--TCSEEECSSCS---CCHHHHHHHHHHTCEEEEECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHT--
T ss_pred ----Hh--CCCEEEECCCC---CChHHHHHHHHhCCCEEEEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHHHC--
Confidence 00 11122222221 23333322 111 121 44667788888888
Q ss_pred CC-EEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 013195 345 GM-QIATDIICGFPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 345 gi-~i~~~~IvG~PgET~ed~~~tl~~i~~l 374 (448)
|+ .+..|--+|| +.|.++-.++++.+.++
T Consensus 190 Gi~~IilDPG~Gf-~kt~~~n~~ll~~l~~~ 219 (294)
T 2dqw_A 190 GVPQVVLDPGFGF-GKLLEHNLALLRRLDEI 219 (294)
T ss_dssp TCSCEEEECCTTS-SCCHHHHHHHHHTHHHH
T ss_pred CCCcEEEcCCCCc-ccCHHHHHHHHHHHHHH
Confidence 76 4555656677 78877666666666554
No 57
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=44.54 E-value=1e+02 Score=23.51 Aligned_cols=96 Identities=11% Similarity=0.114 Sum_probs=54.0
Q ss_pred cChhHHHHHHHHHHhCCCeeecC-----------CC-CCcEEEEeecccccchHHHHHHHHHHHhc--CCCCEE-EEccc
Q 013195 70 HNQSDSEYMAGQLSAFGYALTDN-----------SE-EADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPLV-VAGCV 134 (448)
Q Consensus 70 ~N~~dse~~~~~L~~~G~~~~~~-----------~~-~aDvv~intctv~~~a~~~~~~~i~~~~~--~~~~vV-vgGc~ 134 (448)
-+....+.+...|...||++... .. ..|+++++...-.... ..++++++++ ++.+|| +++..
T Consensus 13 d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~---g~~~~~~l~~~~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 13 DEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPD---GWQVARVAREIDPNMPIVYISGHA 89 (132)
T ss_dssp SSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSC---HHHHHHHHHHHCTTCCEEEEESSC
T ss_pred CcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCC---HHHHHHHHHhcCCCCCEEEEeCCc
Confidence 35666778889999899987532 22 6899999653321011 1233444433 345555 54433
Q ss_pred cccchhhhcCC-ccEEEcCCchhHHHHHHHHHhcCC
Q 013195 135 PQGSRDLKELE-GVSIVGVQQIDRVVEVVEETLKGH 169 (448)
Q Consensus 135 a~~~~e~~~~~-~d~vvg~~~~~~i~~~l~~~~~g~ 169 (448)
........+. ++++.-+-....+...|+....+.
T Consensus 90 -~~~~~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 90 -ALEWASNGVPDSIILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp -CTTHHHHSCTTCEEEESSCCHHHHHHHHHHHHHTT
T ss_pred -cHHHHHhhcCCcceEeCCCCHHHHHHHHHHHHhcC
Confidence 2211112222 346666667778888888776554
No 58
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=44.44 E-value=67 Score=25.03 Aligned_cols=103 Identities=12% Similarity=0.115 Sum_probs=57.8
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCC-CeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhcC-
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFG-YALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA- 124 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G-~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~- 124 (448)
+.+|.++. -+....+.+...|++.| |++... ....|+|++....-... ..++++++++.
T Consensus 14 ~~~ilivd----d~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~----g~~~~~~l~~~~ 85 (135)
T 3snk_A 14 RKQVALFS----SDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGGDLL----GKPGIVEARALW 85 (135)
T ss_dssp CEEEEEEC----SCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETTGGG----GSTTHHHHHGGG
T ss_pred CcEEEEEc----CCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCCCch----HHHHHHHHHhhC
Confidence 45676653 46777888999999999 887531 34579999965322111 23344444443
Q ss_pred -CCCE-EEEccccccchh-hhcCCcc-EEEcCCchhHHHHHHHHHhcC
Q 013195 125 -KKPL-VVAGCVPQGSRD-LKELEGV-SIVGVQQIDRVVEVVEETLKG 168 (448)
Q Consensus 125 -~~~v-VvgGc~a~~~~e-~~~~~~d-~vvg~~~~~~i~~~l~~~~~g 168 (448)
+.+| ++++........ .....++ ++.-+-....+...|.....+
T Consensus 86 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 86 ATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred CCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 3454 455543211111 1233344 566666777777777665443
No 59
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=44.21 E-value=1.1e+02 Score=23.65 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=60.2
Q ss_pred CCceEEEEecCCccChhHHHHHHHHHHhCCCeeecC------------CCCCcEEEEeecccccchHHHHHHHHHHHhcC
Q 013195 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (448)
Q Consensus 57 ~~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~ 124 (448)
.+.+|.|+. -|....+.+...|++.||+++.. ....|+|+++.-.- .. ...++++++++.
T Consensus 6 ~~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~-~~---~g~~~~~~l~~~ 77 (136)
T 3hdv_A 6 ARPLVLVVD----DNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQ-PE---SGLDLIRTIRAS 77 (136)
T ss_dssp -CCEEEEEC----SCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCS-SS---CHHHHHHHHHTS
T ss_pred CCCeEEEEC----CCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCC-CC---CHHHHHHHHHhc
Confidence 345666543 46777888999999999987542 22379999964322 21 134456666554
Q ss_pred ---CCCEE-EEccccccch-hhhcCCcc-EEEcCCchhHHHHHHHHHhcCC
Q 013195 125 ---KKPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (448)
Q Consensus 125 ---~~~vV-vgGc~a~~~~-e~~~~~~d-~vvg~~~~~~i~~~l~~~~~g~ 169 (448)
+.+|| +++....... +.....++ ++.-+-....+...|+....|.
T Consensus 78 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 78 ERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp TTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred CCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 34554 4443221111 11233444 5667777788888888877664
No 60
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=42.39 E-value=80 Score=26.54 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=46.7
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecC-------CCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-E
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~-------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vV-v 130 (448)
++|++ +||.....=.+.++..|...|+.+... ..+-|++++-|-+ ..+ ..+.+.++.++++|.+|| +
T Consensus 41 ~~I~i--~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vi~iS~s--G~t-~~~~~~~~~ak~~g~~vi~I 115 (180)
T 1jeo_A 41 KKIFI--FGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGS--GRT-ESVLTVAKKAKNINNNIIAI 115 (180)
T ss_dssp SSEEE--ECCHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEEESS--SCC-HHHHHHHHHHHTTCSCEEEE
T ss_pred CEEEE--EeecHHHHHHHHHHHHHHHcCCeEEEeCCCccccCCCCCEEEEEeCC--CCc-HHHHHHHHHHHHCCCcEEEE
Confidence 45655 577777778888889998888765421 2345777764443 333 346777888888897755 6
Q ss_pred Eccc
Q 013195 131 AGCV 134 (448)
Q Consensus 131 gGc~ 134 (448)
++-.
T Consensus 116 T~~~ 119 (180)
T 1jeo_A 116 VCEC 119 (180)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 6643
No 61
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=42.37 E-value=37 Score=30.66 Aligned_cols=133 Identities=12% Similarity=0.170 Sum_probs=74.5
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEE--EEecCC---CCCCCCCCCCHHHHHHHHHHhC-CCCCcceEEEeecCCcChhHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVW--LSSEDT---GAYGRDIGVNLPILLNAIVAEL-PPDGSTMLRIGMTNPPFILEH 291 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~--~~~~~~---~~yg~d~~~~l~~ll~~l~~~~-~~~~~~~iri~~~~p~~i~~~ 291 (448)
.-+.+..++-++++.+.+.|...+. +.+..+ .++| .+++++|.+.+ +. -..-+.+...+|.. .
T Consensus 11 il~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G-------~~~v~~ir~~~~~~-~~~dvhLmv~~p~~---~ 79 (228)
T 3ovp_A 11 ILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFG-------HPVVESLRKQLGQD-PFFDMHMMVSKPEQ---W 79 (228)
T ss_dssp CTTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBC-------HHHHHHHHHHHCSS-SCEEEEEECSCGGG---G
T ss_pred heeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccC-------HHHHHHHHHhhCCC-CcEEEEEEeCCHHH---H
Confidence 3455666778899999888887554 455443 2233 56778877653 20 12344454445543 2
Q ss_pred HHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHH
Q 013195 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 371 (448)
Q Consensus 292 l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i 371 (448)
.+.+.+. + +..+++..|+.+ +..+.++.++++ |+.+...+- |+...+.+++.+
T Consensus 80 i~~~~~a----G-ad~itvH~Ea~~--------------~~~~~i~~i~~~--G~k~gval~---p~t~~e~l~~~l--- 132 (228)
T 3ovp_A 80 VKPMAVA----G-ANQYTFHLEATE--------------NPGALIKDIREN--GMKVGLAIK---PGTSVEYLAPWA--- 132 (228)
T ss_dssp HHHHHHH----T-CSEEEEEGGGCS--------------CHHHHHHHHHHT--TCEEEEEEC---TTSCGGGTGGGG---
T ss_pred HHHHHHc----C-CCEEEEccCCch--------------hHHHHHHHHHHc--CCCEEEEEc---CCCCHHHHHHHh---
Confidence 3223322 2 467778777753 246778888998 887655543 443333332222
Q ss_pred HhcCCCeEEEEeceeCCCCcc
Q 013195 372 KEYKFPQVHISQFYPRPGTPA 392 (448)
Q Consensus 372 ~~l~~~~v~i~~~~p~pGT~~ 392 (448)
. ..|.+. ..+-.||.--
T Consensus 133 -~-~~D~Vl--~msv~pGf~G 149 (228)
T 3ovp_A 133 -N-QIDMAL--VMTVEPGFGG 149 (228)
T ss_dssp -G-GCSEEE--EESSCTTTCS
T ss_pred -c-cCCeEE--EeeecCCCCC
Confidence 2 256543 4556788744
No 62
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=41.88 E-value=1.2e+02 Score=23.85 Aligned_cols=103 Identities=14% Similarity=0.085 Sum_probs=59.4
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCC-CeeecC------------C-CCCcEEEEeecccccchHHHHHHHHHHHhc
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFG-YALTDN------------S-EEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G-~~~~~~------------~-~~aDvv~intctv~~~a~~~~~~~i~~~~~ 123 (448)
..+|.|+. -+..-.+.+...|+..| |+++.. . ...|+|+++.. .-. .....+++++++
T Consensus 20 ~~~ilivd----d~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~-l~~---~~g~~~~~~l~~ 91 (146)
T 4dad_A 20 MINILVAS----EDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGA-ALD---TAELAAIEKLSR 91 (146)
T ss_dssp GCEEEEEC----SCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECT-TCC---HHHHHHHHHHHH
T ss_pred CCeEEEEe----CCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCC-CCC---ccHHHHHHHHHH
Confidence 45666653 46677788999999999 887432 1 56899999643 222 123445555544
Q ss_pred C--CCCEE-EEccccccch-hhhcCCc-cEEEcCCchhHHHHHHHHHhcC
Q 013195 124 A--KKPLV-VAGCVPQGSR-DLKELEG-VSIVGVQQIDRVVEVVEETLKG 168 (448)
Q Consensus 124 ~--~~~vV-vgGc~a~~~~-e~~~~~~-d~vvg~~~~~~i~~~l~~~~~g 168 (448)
. +.+|| +++....... +.....+ +++.-+-....+...|.....+
T Consensus 92 ~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 92 LHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp HCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred hCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 3 34444 5553221111 1113333 3566666777888888776654
No 63
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=41.16 E-value=67 Score=30.38 Aligned_cols=51 Identities=10% Similarity=0.010 Sum_probs=35.3
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCC-CC--CC---CCCHHHHHHHHHHh
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GR--DI---GVNLPILLNAIVAE 269 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~y-g~--d~---~~~l~~ll~~l~~~ 269 (448)
+.++.+++.+.+..+.+.|++.|..+.+|.... |. +. -..-.+|++.|.+.
T Consensus 81 ~~~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~ 137 (310)
T 3apt_A 81 AGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRER 137 (310)
T ss_dssp TTSCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHh
Confidence 346888999999999999999998776665543 30 10 12556788777654
No 64
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=39.93 E-value=78 Score=26.79 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=46.7
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeec-------CCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-E
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD-------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~-------~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vV-v 130 (448)
++|++ +||..+..=...++..|...|+.... ...+-|++++=|-+ ..+ ..+.+.++.++++|.+|| +
T Consensus 38 ~~I~i--~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vI~iS~s--G~t-~~~~~~~~~ak~~g~~vi~I 112 (186)
T 1m3s_A 38 HQIFT--AGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGS--GET-KSLIHTAAKAKSLHGIVAAL 112 (186)
T ss_dssp SCEEE--ECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSS--SCC-HHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEE--EecCHHHHHHHHHHHHHHhcCCeEEEeCcccccCCCCCCEEEEEcCC--CCc-HHHHHHHHHHHHCCCEEEEE
Confidence 45555 57777777788899999999986542 12345777764433 333 346777888999998765 6
Q ss_pred Ecc
Q 013195 131 AGC 133 (448)
Q Consensus 131 gGc 133 (448)
++.
T Consensus 113 T~~ 115 (186)
T 1m3s_A 113 TIN 115 (186)
T ss_dssp ESC
T ss_pred ECC
Confidence 654
No 65
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=39.75 E-value=1.2e+02 Score=29.24 Aligned_cols=135 Identities=20% Similarity=0.227 Sum_probs=77.9
Q ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCC------------------CcceEEEe
Q 013195 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD------------------GSTMLRIG 281 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~------------------~~~~iri~ 281 (448)
..+.+..++++++|.+.|..-|.+.-.+. .-.+.+..|.+..+.+ +...+|+
T Consensus 42 T~D~~atv~Qi~~l~~aG~diVRvavp~~---------~~a~al~~I~~~~~vPlvaDiHf~~~lal~a~e~G~dklRI- 111 (366)
T 3noy_A 42 THDVEATLNQIKRLYEAGCEIVRVAVPHK---------EDVEALEEIVKKSPMPVIADIHFAPSYAFLSMEKGVHGIRI- 111 (366)
T ss_dssp TTCHHHHHHHHHHHHHTTCCEEEEECCSH---------HHHHHHHHHHHHCSSCEEEECCSCHHHHHHHHHTTCSEEEE-
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCCh---------HHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHhCCCeEEE-
Confidence 47899999999999999988777754321 1123333333322110 2234554
Q ss_pred ecCCcCh--hHHHHHHHHHHhCCCcccccccccCCC--CHHHHHhcCCCC---CHHHHHHHHHHHHHhCCCCEEEEEEEE
Q 013195 282 MTNPPFI--LEHLKEIAEVLRHPCVYSFLHVPVQSG--SDAVLSAMNREY---TLSDFRTVVDTLIELVPGMQIATDIIC 354 (448)
Q Consensus 282 ~~~p~~i--~~~l~el~~l~~~~~~~~~l~iglES~--s~~vLk~m~R~~---t~e~~~~~i~~ir~~~pgi~i~~~~Iv 354 (448)
||..+ .+.++++.+..+..+. -+-||+-+| +.++|++++... -++-..+.++.+.+. |+ .++++
T Consensus 112 --NPGNig~~~~~~~vv~~ak~~~~--piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~--gf---~~ivi 182 (366)
T 3noy_A 112 --NPGNIGKEEIVREIVEEAKRRGV--AVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKW--GF---TNYKV 182 (366)
T ss_dssp --CHHHHSCHHHHHHHHHHHHHHTC--EEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHT--TC---CCEEE
T ss_pred --CCcccCchhHHHHHHHHHHHcCC--CEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhC--CC---CeEEE
Confidence 45544 2334445555544443 445666555 578888776432 234455566667777 65 57777
Q ss_pred eCCCCCHHHHHHHHHHHHh
Q 013195 355 GFPGETDEDFNQTVNLIKE 373 (448)
Q Consensus 355 G~PgET~ed~~~tl~~i~~ 373 (448)
-+..-+..+..+..+.+.+
T Consensus 183 S~K~S~v~~~i~ayr~la~ 201 (366)
T 3noy_A 183 SIKGSDVLQNVRANLIFAE 201 (366)
T ss_dssp EEECSSHHHHHHHHHHHHH
T ss_pred eeecCChHHHHHHHHHHHh
Confidence 7777666665556655544
No 66
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A
Probab=39.38 E-value=1.5e+02 Score=29.04 Aligned_cols=58 Identities=9% Similarity=0.086 Sum_probs=36.6
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC---CCHHHHHHHHHHhCCCCCcceEEEe
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIG 281 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~---~~l~~ll~~l~~~~~~~~~~~iri~ 281 (448)
.++++++++++.+.+.|++.|-+.|.+...+ .+.. ..-.+.++++.+.+. ....+++.
T Consensus 124 ~~~e~~~~~a~~~~~~G~~~iKl~G~~~~~~-~~~~~~~~~d~e~v~avR~avG--~d~~L~vD 184 (405)
T 3rr1_A 124 DRPADVIAGMKALQAGGFDHFKLNGCEEMGI-IDTSRAVDAAVARVAEIRSAFG--NTVEFGLD 184 (405)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEESCCSSSC-BCSHHHHHHHHHHHHHHHHTTG--GGSEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCcccc-cccchhHHHHHHHHHHHHHHhC--CCceEEEE
Confidence 4689999999999999999998855321100 0000 112466777777664 34566665
No 67
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=38.95 E-value=41 Score=32.10 Aligned_cols=140 Identities=11% Similarity=0.158 Sum_probs=70.5
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC--C---CCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHH
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--G---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~--~---~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~ 293 (448)
+..+.+.+++.++.+.+.|..-|-+-++.+.. |... . .++..++++|.+.++ ...+.+.+.++.-+..-+
T Consensus 60 ~~~~~~~a~~~A~~~v~~GAdIIDIGgeSTrP-G~~v~~~eEl~Rv~pvI~~l~~~~~---~vpISIDT~~~~VaeaAl- 134 (318)
T 2vp8_A 60 ATFSDAAARDAVHRAVADGADVIDVGGVKAGP-GERVDVDTEITRLVPFIEWLRGAYP---DQLISVDTWRAQVAKAAC- 134 (318)
T ss_dssp ----CHHHHHHHHHHHHTTCSEEEEC-----------CHHHHHHHHHHHHHHHHHHST---TCEEEEECSCHHHHHHHH-
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-CCCCCHHHHHHHHHHHHHHHHhhCC---CCeEEEeCCCHHHHHHHH-
Confidence 34578999999999999999988876653322 3111 1 134445666665432 357788766553221111
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHh--------------------cCCC--CC----------HHHHHHHHHHHHH
Q 013195 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSA--------------------MNRE--YT----------LSDFRTVVDTLIE 341 (448)
Q Consensus 294 el~~l~~~~~~~~~l~iglES~s~~vLk~--------------------m~R~--~t----------~e~~~~~i~~ir~ 341 (448)
+. ...+.+-++-+ + +++++.. |.+. |. .+.+.+.++.+.+
T Consensus 135 ---~a--Ga~iINDVsg~-~--d~~m~~vaa~~g~~vVlmh~~G~~p~tmq~~~~y~~~~~dv~~ev~~~l~~~i~~a~~ 206 (318)
T 2vp8_A 135 ---AA--GADLINDTWGG-V--DPAMPEVAAEFGAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVA 206 (318)
T ss_dssp ---HH--TCCEEEETTSS-S--STTHHHHHHHHTCEEEEECC-------------CCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---Hh--CCCEEEECCCC-C--chHHHHHHHHhCCCEEEECCCCCCccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 11 11222333222 1 2233321 1111 10 2455667888888
Q ss_pred hCCCC---EEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 013195 342 LVPGM---QIATDIICGFPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 342 ~~pgi---~i~~~~IvG~PgET~ed~~~tl~~i~~l 374 (448)
+ |+ .+..|=-+|| +.|.++-.++++.+.++
T Consensus 207 a--GI~~~~IilDPG~GF-~Kt~~~nl~ll~~l~~l 239 (318)
T 2vp8_A 207 A--GVAREKVLIDPAHDF-GKNTFHGLLLLRHVADL 239 (318)
T ss_dssp T--TCCGGGEEEETTTTC-CTTSHHHHHHHHTHHHH
T ss_pred c--CCChhhEEEcCCCCc-ccCHHHHHHHHHHHHHH
Confidence 8 87 4888888898 55655545555555444
No 68
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=38.67 E-value=1.5e+02 Score=23.65 Aligned_cols=102 Identities=14% Similarity=0.066 Sum_probs=58.2
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhc----
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS---- 123 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~---- 123 (448)
.+|.|+ .-|....+.+...|++.||.+... ....|+|+++...-... ..++++.+++
T Consensus 8 ~~ILiv----dd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~----g~~~~~~lr~~~~~ 79 (154)
T 3gt7_A 8 GEILIV----EDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMD----GYALCRWLKGQPDL 79 (154)
T ss_dssp CEEEEE----CSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSC----HHHHHHHHHHSTTT
T ss_pred CcEEEE----eCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCC----HHHHHHHHHhCCCc
Confidence 355554 347777888999999999987432 35689999965332222 2344555544
Q ss_pred CCCCEE-EEccccccch-hhhcCCc-cEEEcCCchhHHHHHHHHHhcC
Q 013195 124 AKKPLV-VAGCVPQGSR-DLKELEG-VSIVGVQQIDRVVEVVEETLKG 168 (448)
Q Consensus 124 ~~~~vV-vgGc~a~~~~-e~~~~~~-d~vvg~~~~~~i~~~l~~~~~g 168 (448)
++.+|| +++....... +.....+ +++.-+-....+...|.....+
T Consensus 80 ~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 80 RTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp TTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 244554 5553221111 1112334 4566666777777777766544
No 69
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=38.63 E-value=1.4e+02 Score=23.25 Aligned_cols=94 Identities=6% Similarity=0.020 Sum_probs=53.6
Q ss_pred cChhHHHHHHHHHHhCCCeeecC-------------CCCCcEEEEeecccccchHHHHHHHHHHHhc--CCCCEE-EEcc
Q 013195 70 HNQSDSEYMAGQLSAFGYALTDN-------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPLV-VAGC 133 (448)
Q Consensus 70 ~N~~dse~~~~~L~~~G~~~~~~-------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~--~~~~vV-vgGc 133 (448)
-+....+.+...|...||++... ....|+|+++...-... ...+++++++ ++.+|| +++.
T Consensus 11 d~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~----g~~~~~~l~~~~~~~~ii~ls~~ 86 (143)
T 3jte_A 11 DESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLS----GMDILREIKKITPHMAVIILTGH 86 (143)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSC----HHHHHHHHHHHCTTCEEEEEECT
T ss_pred CCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCc----HHHHHHHHHHhCCCCeEEEEECC
Confidence 46677788899999999987431 35789999965432222 2334444443 344555 4443
Q ss_pred ccccch--hhhcCCcc-EEEcCCchhHHHHHHHHHhcC
Q 013195 134 VPQGSR--DLKELEGV-SIVGVQQIDRVVEVVEETLKG 168 (448)
Q Consensus 134 ~a~~~~--e~~~~~~d-~vvg~~~~~~i~~~l~~~~~g 168 (448)
..... +.....++ ++.-+-....+...|.....+
T Consensus 87 -~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 87 -GDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp -TCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 22111 11233344 566666777777777765543
No 70
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=38.16 E-value=1.8e+02 Score=26.48 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=77.0
Q ss_pred ceEEEeecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHH--H--HhcCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Q 013195 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV--L--SAMNREYTLSDFRTVVDTLIELVPGMQIATD 351 (448)
Q Consensus 276 ~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~v--L--k~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~ 351 (448)
..+.+.. -|.. ....++.+..+..+.--.+|+|+|..+-.- + ..+.-+.+.+++.+.++++.+.+|+..--.+
T Consensus 28 ~pvT~Ai-~P~~--p~~~~~a~~A~~~G~EvllHlPMep~~~~~~~~gp~~L~~~~s~~ei~~~l~~al~~vP~a~GvnN 104 (245)
T 2nly_A 28 IPVTVAV-MPFL--EHSTKQAEIAQAAGLEVIVHMPLEPKKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPYAVGLNN 104 (245)
T ss_dssp SCEEEEE-CSSS--TTHHHHHHHHHHTTCEEEEEEEECCC--------CCCBCTTCCHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred CCeEEEE-CCCC--CCHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCcccCcCCCCHHHHHHHHHHHHHHCCCcEEEec
Confidence 4566653 3321 122334455544444458999999986331 1 1223356899999999999999999643334
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEec-ee---------CCCCcccCC----C--CCCHHHHHHHHHHHHHHHH
Q 013195 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQF-YP---------RPGTPAARM----K--KVPSAVVKKRSRELTSVFE 415 (448)
Q Consensus 352 ~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~-~p---------~pGT~~~~~----~--~v~~~~~~~R~~~l~~~~~ 415 (448)
-|=+-=.++.+-+...++.+++.++- ++-.- ++ .-|-|...- + ..+.....+.++++..+.+
T Consensus 105 HmGS~~T~~~~~m~~vm~~l~~~gL~--fvDS~Ts~~S~a~~~A~~~gvp~~~rdvFLD~~~~~~~~I~~ql~~a~~~A~ 182 (245)
T 2nly_A 105 HMGSKIVENEKIMRAILEVVKEKNAF--IIDSGTSPHSLIPQLAEELEVPYATRSIFLDNTHSSRKEVIKNMRKLAKKAK 182 (245)
T ss_dssp EECTTGGGCHHHHHHHHHHHHHTTCE--EEECCCCSSCSHHHHHHHTTCCEEECCEESCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccccchhcCHHHHHHHHHHHHHCCCE--EEcCCCCcccHHHHHHHHcCCCeEEeeEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 44333356788888899999998742 22111 11 244444432 1 2334566666666666655
No 71
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=37.54 E-value=99 Score=26.09 Aligned_cols=70 Identities=11% Similarity=0.141 Sum_probs=46.1
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecC-------------CCCCcEEEEeecccccchHHHHHHHHHHHhcCC
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~-------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~ 125 (448)
++|++ +||.....=.+.++..|...|..+... ..+-|++++-| ....+ ..+...++.+|++|
T Consensus 40 ~~I~i--~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS--~sG~t-~~~~~~~~~ak~~g 114 (187)
T 3sho_A 40 DHVIV--VGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVS--VWRYL-RDTVAALAGAAERG 114 (187)
T ss_dssp SEEEE--ECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEEC--CSSCC-HHHHHHHHHHHHTT
T ss_pred CEEEE--EecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEe--CCCCC-HHHHHHHHHHHHCC
Confidence 45554 577778888888999999888765321 23457777633 33333 24677788888899
Q ss_pred CCEE-EEcc
Q 013195 126 KPLV-VAGC 133 (448)
Q Consensus 126 ~~vV-vgGc 133 (448)
.+|| +++.
T Consensus 115 ~~vi~IT~~ 123 (187)
T 3sho_A 115 VPTMALTDS 123 (187)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEeCC
Confidence 8765 6654
No 72
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=37.52 E-value=1.4e+02 Score=23.10 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=59.8
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHh-CCCeeecC-----------C-CCCcEEEEeecccccchHHHHHHHHHHHhc--
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDN-----------S-EEADIWLINTCTVKSPSQSAMDTLIAKCKS-- 123 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~-~G~~~~~~-----------~-~~aDvv~intctv~~~a~~~~~~~i~~~~~-- 123 (448)
.+|.|+ .-+....+.+...|++ .||+++.. . ...|+|+++.. . +.......+++++++
T Consensus 5 ~~iliv----dd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~-l--~~~~~g~~~~~~l~~~~ 77 (140)
T 3lua_A 5 GTVLLI----DYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIA-F--PVEKEGLEVLSAIRNNS 77 (140)
T ss_dssp CEEEEE----CSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSC-S--SSHHHHHHHHHHHHHSG
T ss_pred CeEEEE----eCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCC-C--CCCCcHHHHHHHHHhCc
Confidence 455554 3466677888999999 89987532 3 56899999542 2 201233455665554
Q ss_pred --CCCCEE-EEccccccch-hhhcCCcc-EEEcCCchhHHHHHHHHHhcCC
Q 013195 124 --AKKPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (448)
Q Consensus 124 --~~~~vV-vgGc~a~~~~-e~~~~~~d-~vvg~~~~~~i~~~l~~~~~g~ 169 (448)
.+.+|| +++....... +.....++ ++.-+-....+.+.|+....+.
T Consensus 78 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 78 RTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp GGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 344554 5554321111 11233444 5666666678888888777654
No 73
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=37.49 E-value=2e+02 Score=25.42 Aligned_cols=41 Identities=24% Similarity=0.427 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCC
Q 013195 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376 (448)
Q Consensus 328 t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~ 376 (448)
+.+.+.+.++.+++. |... |++.|+ .+.+.+..+.+++.++
T Consensus 87 ~~~~~~~~i~~A~~l--Ga~~----v~~~p~--~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 87 SEEEIDRAFDYAKRV--GVKL----IVGVPN--YELLPYVDKKVKEYDF 127 (257)
T ss_dssp SHHHHHHHHHHHHHH--TCSE----EEEEEC--GGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHh--CCCE----EEecCC--HHHHHHHHHHHHHcCC
Confidence 455666666666666 5422 222343 3455555566665554
No 74
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=37.41 E-value=81 Score=23.27 Aligned_cols=89 Identities=11% Similarity=0.101 Sum_probs=46.1
Q ss_pred ChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhc----CCCC-EEEEccc
Q 013195 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS----AKKP-LVVAGCV 134 (448)
Q Consensus 71 N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~----~~~~-vVvgGc~ 134 (448)
|....+.+...|+..||++... ....|+++++...- ... ...+++.+++ .+.+ |++++.
T Consensus 10 ~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~-~~~---~~~~~~~l~~~~~~~~~~ii~~~~~- 84 (119)
T 2j48_A 10 EDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPP-DQS---CLLLLQHLREHQADPHPPLVLFLGE- 84 (119)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTT-CCT---HHHHHHHHHHTCCCSSCCCEEEESS-
T ss_pred CHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCC-CCC---HHHHHHHHHhccccCCCCEEEEeCC-
Confidence 5566778888888889876532 12479999965432 222 2334444443 2344 445554
Q ss_pred cccchhhhcCCcc-EEEcCCchhHHHHHHHHH
Q 013195 135 PQGSRDLKELEGV-SIVGVQQIDRVVEVVEET 165 (448)
Q Consensus 135 a~~~~e~~~~~~d-~vvg~~~~~~i~~~l~~~ 165 (448)
.... .......+ .+.-+-....+...+...
T Consensus 85 ~~~~-~~~~~g~~~~l~kp~~~~~l~~~l~~~ 115 (119)
T 2j48_A 85 PPVD-PLLTAQASAILSKPLDPQLLLTTLQGL 115 (119)
T ss_dssp CCSS-HHHHHHCSEECSSCSTTHHHHHHHHTT
T ss_pred CCch-hhhhcCHHHhccCCCCHHHHHHHHHHH
Confidence 3222 32222233 344444445566666543
No 75
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=37.27 E-value=1.3e+02 Score=22.64 Aligned_cols=94 Identities=14% Similarity=0.122 Sum_probs=50.6
Q ss_pred ChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhc--CCCCE-EEEccccc
Q 013195 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPL-VVAGCVPQ 136 (448)
Q Consensus 71 N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~--~~~~v-VvgGc~a~ 136 (448)
+....+.+...|+..||++... ....|+++++...-.... .++++++++ ++.+| ++++....
T Consensus 12 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g----~~~~~~l~~~~~~~~ii~~s~~~~~ 87 (124)
T 1srr_A 12 QSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDG----IEILKRMKVIDENIRVIIMTAYGEL 87 (124)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCTTCCH----HHHHHHHHHHCTTCEEEEEESSCCH
T ss_pred CHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCH----HHHHHHHHHhCCCCCEEEEEccCch
Confidence 5556677888888888876432 134799999643322122 233444433 34454 45554321
Q ss_pred cch-hhhcCC-ccEEEcCCchhHHHHHHHHHhcC
Q 013195 137 GSR-DLKELE-GVSIVGVQQIDRVVEVVEETLKG 168 (448)
Q Consensus 137 ~~~-e~~~~~-~d~vvg~~~~~~i~~~l~~~~~g 168 (448)
... +..... .+++.-+-....+...++....+
T Consensus 88 ~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 88 DMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp HHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 111 111223 34677776777777777765543
No 76
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=37.05 E-value=1.4e+02 Score=22.95 Aligned_cols=97 Identities=9% Similarity=-0.008 Sum_probs=52.7
Q ss_pred cChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccc----cchHHHHHHHHHHHhc--CCCCEE-EE
Q 013195 70 HNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVK----SPSQSAMDTLIAKCKS--AKKPLV-VA 131 (448)
Q Consensus 70 ~N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~----~~a~~~~~~~i~~~~~--~~~~vV-vg 131 (448)
-+....+.+...|++.||++... ....|+++++...-. ... ...+++++++ ++.+|| ++
T Consensus 11 d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~---g~~~~~~l~~~~~~~~ii~ls 87 (140)
T 2qr3_A 11 DNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNE---GLFWLHEIKRQYRDLPVVLFT 87 (140)
T ss_dssp SCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CC---HHHHHHHHHHHCTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCcc---HHHHHHHHHhhCcCCCEEEEE
Confidence 35666778888888888876532 234799999653220 111 2334444443 344554 55
Q ss_pred ccccccch-hhhcCCcc-EEEcCCchhHHHHHHHHHhcCC
Q 013195 132 GCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (448)
Q Consensus 132 Gc~a~~~~-e~~~~~~d-~vvg~~~~~~i~~~l~~~~~g~ 169 (448)
+....... +.....++ ++.-+-....+...|.....+.
T Consensus 88 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 88 AYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp EGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 43221111 11233344 5666666778888888776653
No 77
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=36.63 E-value=8.2 Score=27.22 Aligned_cols=29 Identities=21% Similarity=0.118 Sum_probs=19.9
Q ss_pred EEEeCCCCCCCccceeeCccCCCccccCHH
Q 013195 195 ILPINVGCLGACTYCKTKHARGHLGSYTVE 224 (448)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg~~rsr~~e 224 (448)
+|+...|||+ |.+|..+...|-.--..|+
T Consensus 9 ~v~~~~~Cpn-C~~~tt~~~~G~v~i~dP~ 37 (59)
T 3lpe_B 9 YLTNDEICPI-CHSPTSENWIGLLIVINPE 37 (59)
T ss_dssp BEESSSBCTT-TCCBEESCEECEEEESCTT
T ss_pred cccCCCCCCC-CCCCccCCEeeEEEEeCCc
Confidence 3567779998 9999877766754444443
No 78
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=36.10 E-value=1.4e+02 Score=22.60 Aligned_cols=94 Identities=11% Similarity=0.056 Sum_probs=52.9
Q ss_pred cChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhcC----CCCE-EEEcc
Q 013195 70 HNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA----KKPL-VVAGC 133 (448)
Q Consensus 70 ~N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~----~~~v-VvgGc 133 (448)
-+....+.+...|++.||++... ....|+|+++...-... ...+++++++. +.+| ++++.
T Consensus 11 d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~----g~~~~~~l~~~~~~~~~~ii~~s~~ 86 (127)
T 3i42_A 11 DYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTS----GLALVKQLRALPMEKTSKFVAVSGF 86 (127)
T ss_dssp SCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSB----HHHHHHHHHHSCCSSCCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCC----HHHHHHHHHhhhccCCCCEEEEECC
Confidence 46667788889999999876432 24579999965432222 23455555543 3444 45554
Q ss_pred ccccchhhhcCCc-cEEEcCCchhHHHHHHHHHhc
Q 013195 134 VPQGSRDLKELEG-VSIVGVQQIDRVVEVVEETLK 167 (448)
Q Consensus 134 ~a~~~~e~~~~~~-d~vvg~~~~~~i~~~l~~~~~ 167 (448)
............+ +++.-+-....+.+.+.....
T Consensus 87 ~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 121 (127)
T 3i42_A 87 AKNDLGKEACELFDFYLEKPIDIASLEPILQSIEG 121 (127)
T ss_dssp -CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC-
T ss_pred cchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhhc
Confidence 4333221112223 456677677777777765543
No 79
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=35.30 E-value=1.7e+02 Score=23.22 Aligned_cols=93 Identities=15% Similarity=0.125 Sum_probs=51.3
Q ss_pred cChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhc--CCCCEE-EEcccc
Q 013195 70 HNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPLV-VAGCVP 135 (448)
Q Consensus 70 ~N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~--~~~~vV-vgGc~a 135 (448)
-+....+.+...|...||++... ....|+++++...-.... ..+++.+++ ++.+|| +++. .
T Consensus 11 d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~~~g----~~~~~~l~~~~~~~pii~ls~~-~ 85 (155)
T 1qkk_A 11 DDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDG----LALFRKILALDPDLPMILVTGH-G 85 (155)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCH----HHHHHHHHHHCTTSCEEEEECG-G
T ss_pred CCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCH----HHHHHHHHhhCCCCCEEEEECC-C
Confidence 45666788889999999987532 345799999654322222 233444433 345555 5443 2
Q ss_pred ccch--hhhcCCc-cEEEcCCchhHHHHHHHHHhc
Q 013195 136 QGSR--DLKELEG-VSIVGVQQIDRVVEVVEETLK 167 (448)
Q Consensus 136 ~~~~--e~~~~~~-d~vvg~~~~~~i~~~l~~~~~ 167 (448)
.... ......+ +++.-+-....+...|.....
T Consensus 86 ~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 86 DIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEE 120 (155)
T ss_dssp GHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Confidence 2111 1112334 456666666677777765543
No 80
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=34.71 E-value=1.5e+02 Score=22.68 Aligned_cols=94 Identities=14% Similarity=0.087 Sum_probs=51.0
Q ss_pred cChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhc--CCCCE-EEEcccc
Q 013195 70 HNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPL-VVAGCVP 135 (448)
Q Consensus 70 ~N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~--~~~~v-VvgGc~a 135 (448)
-+....+.+...|+..||++... ....|+++++...-.... .++++++++ .+.+| ++++...
T Consensus 11 d~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l~~~~g----~~~~~~l~~~~~~~~ii~~s~~~~ 86 (132)
T 3crn_A 11 DDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDMEG----TELLEKAHKLRPGMKKIMVTGYAS 86 (132)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBCSSSBH----HHHHHHHHHHCTTSEEEEEESCCC
T ss_pred CCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCch----HHHHHHHHhhCCCCcEEEEecccc
Confidence 35566778888888889876432 235799999643322122 233444433 34454 4555432
Q ss_pred ccch-hhhcCCc-cEEEcCCchhHHHHHHHHHhc
Q 013195 136 QGSR-DLKELEG-VSIVGVQQIDRVVEVVEETLK 167 (448)
Q Consensus 136 ~~~~-e~~~~~~-d~vvg~~~~~~i~~~l~~~~~ 167 (448)
.... +.....+ +++.-+-....+...++....
T Consensus 87 ~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 87 LENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp HHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhccCCCCHHHHHHHHHHHHh
Confidence 1111 1112333 456666666777777766543
No 81
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=34.54 E-value=1.4e+02 Score=27.46 Aligned_cols=141 Identities=12% Similarity=0.090 Sum_probs=70.5
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHH
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (448)
.+..+++.+++.++.+.+.|..-|-+.+ ++-..+....+..++..+... ....+.+.+.+|.-+.. -.+
T Consensus 19 g~~~~~~~a~~~a~~~v~~GAdiIDIg~---g~~~v~~~ee~~rvv~~i~~~----~~~pisIDT~~~~v~~a----Al~ 87 (262)
T 1f6y_A 19 IQERDPAPVQEWARRQEEGGARALDLNV---GPAVQDKVSAMEWLVEVTQEV----SNLTLCLDSTNIKAIEA----GLK 87 (262)
T ss_dssp HHHTCHHHHHHHHHHHHHHTCSEEEEBC---C----CHHHHHHHHHHHHHTT----CCSEEEEECSCHHHHHH----HHH
T ss_pred hhcCCHHHHHHHHHHHHHCCCcEEEECC---CCCCCChHHHHHHHHHHHHHh----CCCeEEEeCCCHHHHHH----HHh
Confidence 4567899999999999999998776644 111111112344444444432 24567777655532111 111
Q ss_pred HHhCCCcccccccccCCCCH--HHHHh------------cC-CC--CC----HHHHHHHHHHHHHhCCCC---EEEEEEE
Q 013195 298 VLRHPCVYSFLHVPVQSGSD--AVLSA------------MN-RE--YT----LSDFRTVVDTLIELVPGM---QIATDII 353 (448)
Q Consensus 298 l~~~~~~~~~l~iglES~s~--~vLk~------------m~-R~--~t----~e~~~~~i~~ir~~~pgi---~i~~~~I 353 (448)
......+.+.++.+ + ++ +++.. |+ ++ .+ .+-+.+.++.+.++ |+ .+..|-.
T Consensus 88 a~~Ga~iINdvs~~-~--d~~~~~~~~~a~~~~~vvlmh~~~~G~p~t~~~~~~~~~~~~~~a~~~--Gi~~~~IilDPg 162 (262)
T 1f6y_A 88 KCKNRAMINSTNAE-R--EKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEF--GLPMEDLYIDPL 162 (262)
T ss_dssp HCSSCEEEEEECSC-H--HHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHH--TCCGGGEEEECC
T ss_pred hCCCCCEEEECCCC-c--ccHHHHHHHHHHhCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCcccEEEeCC
Confidence 10011222333221 1 11 22211 11 11 12 24456777888888 87 4888888
Q ss_pred EeCCCCCHHHHHHHHHHHHhc
Q 013195 354 CGFPGETDEDFNQTVNLIKEY 374 (448)
Q Consensus 354 vG~PgET~ed~~~tl~~i~~l 374 (448)
+|..|-+.++-.++++.+..+
T Consensus 163 ~g~~g~~~~~~~~~l~~l~~l 183 (262)
T 1f6y_A 163 ILPANVAQDHAPEVLKTLQQI 183 (262)
T ss_dssp CCCTTTCTTHHHHHHHHHHHH
T ss_pred CCcCCCChHHHHHHHHHHHHH
Confidence 875565554444444444433
No 82
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=34.20 E-value=84 Score=28.66 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEE------------eCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCC
Q 013195 328 TLSDFRTVVDTLIELVPGMQIATDIIC------------GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390 (448)
Q Consensus 328 t~e~~~~~i~~ir~~~pgi~i~~~~Iv------------G~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT 390 (448)
..+.+....+.+++.+|+..+..-|.- +-| .+.+.++-+.+-+.+.+-+.++.|.+|+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~V~~af~~~~i~~~l~~~~~~~P-----~i~~al~~l~~~G~~~ivV~Pl~l~~G~ 93 (269)
T 2xvy_A 24 ARPALDKMGDRVRAAHPDIPVRWAYTAKMIRAKLRAEGIAAP-----SPAEALAGMAEEGFTHVAVQSLHTIPGE 93 (269)
T ss_dssp TTHHHHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHTTCCCC-----CHHHHHHHHHHTTCCEEEEEECCSSSSH
T ss_pred HHHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHcCCCCC-----CHHHHHHHHHHCCCCEEEEEeceeeccH
Confidence 344666667777777777766666663 444 4445666667777778888888877775
No 83
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=34.08 E-value=1.5e+02 Score=27.29 Aligned_cols=115 Identities=17% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCcccccccc------------cCCCCHHHHHhcCCC
Q 013195 259 LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVP------------VQSGSDAVLSAMNRE 326 (448)
Q Consensus 259 l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~~~~l~ig------------lES~s~~vLk~m~R~ 326 (448)
+.+.++++.+.-. ...--.+...+|. .+...++...+..++ +..|++| +|..+.+.|+. |
T Consensus 5 i~~~f~~~~~~~~--~ali~yi~aGdP~--~~~~~~~~~~l~~~G-aD~iElgiPfSDP~aDGp~Iq~a~~~AL~~---G 76 (267)
T 3vnd_A 5 YQAKFAALKAQDK--GAFVPFVTIGDPS--PELSLKIIQTLVDNG-ADALELGFPFSDPLADGPVIQGANLRSLAA---G 76 (267)
T ss_dssp HHHHHHHHHHHTC--CEEEEEEETTSSC--HHHHHHHHHHHHHTT-CSSEEEECCCSCCTTCCHHHHHHHHHHHHT---T
T ss_pred HHHHHHHHHhcCC--CeEEEEEeCCCCC--HHHHHHHHHHHHHcC-CCEEEECCCCCCCCCCCHHHHHHHHHHHHc---C
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEE-----------------------EeCCCCCHHHHHHHHHHHHhcCCCeEEE
Q 013195 327 YTLSDFRTVVDTLIELVPGMQIATDII-----------------------CGFPGETDEDFNQTVNLIKEYKFPQVHI 381 (448)
Q Consensus 327 ~t~e~~~~~i~~ir~~~pgi~i~~~~I-----------------------vG~PgET~ed~~~tl~~i~~l~~~~v~i 381 (448)
.+.+++.+.++.+|+..+.+.+..-.- +=+|....++..+..+.+++.+++.+.+
T Consensus 77 ~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~l 154 (267)
T 3vnd_A 77 TTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFI 154 (267)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECE
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEE
No 84
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A
Probab=33.26 E-value=2.1e+02 Score=27.81 Aligned_cols=96 Identities=14% Similarity=0.164 Sum_probs=51.0
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCC--C---------CC---------CCHHHHHHHHHHhCCCCCcceEEE
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR--D---------IG---------VNLPILLNAIVAELPPDGSTMLRI 280 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~--d---------~~---------~~l~~ll~~l~~~~~~~~~~~iri 280 (448)
.++++++++++.+++.|++.+-+=- +.++. + .+ ....+.++++.+.++ ....+++
T Consensus 132 ~~~e~~~~~a~~~~~~G~~~~K~Kv---G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G--~d~~l~v 206 (401)
T 3sbf_A 132 DTMEGIYDLVEGFLEKGYKHIRCQL---GFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYG--NQFHILH 206 (401)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEEE---SCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHT--TSSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEee---ccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHcC--CCCEEEE
Confidence 4689999999999999999887632 11110 0 00 112566777777664 4567777
Q ss_pred eecCCcChhHHHHHHHHHHhCCCcccccccccCCCCHHHHHhc
Q 013195 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM 323 (448)
Q Consensus 281 ~~~~p~~i~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m 323 (448)
. .|-..-.+...++.+.+...+ ..++.=|+...+.+-++.+
T Consensus 207 D-an~~~~~~~A~~~~~~L~~~~-i~~iEqP~~~~~~~~~~~l 247 (401)
T 3sbf_A 207 D-VHERLFPNQAIQFAKEVEQYK-PYFIEDILPPNQTEWLDNI 247 (401)
T ss_dssp E-CTTCSCHHHHHHHHHHHGGGC-CSCEECSSCTTCGGGHHHH
T ss_pred E-CCCCCCHHHHHHHHHHHHhcC-CCEEECCCChhHHHHHHHH
Confidence 6 333222222233433343322 2355555544444444444
No 85
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=33.16 E-value=1.6e+02 Score=22.30 Aligned_cols=93 Identities=11% Similarity=0.074 Sum_probs=50.7
Q ss_pred ChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhcC--CCCEE-EEccccc
Q 013195 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLV-VAGCVPQ 136 (448)
Q Consensus 71 N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~--~~~vV-vgGc~a~ 136 (448)
+....+.+...|...||.+... ....|+++++...-... ..++++++++. +.+|| +++....
T Consensus 12 ~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~----g~~~~~~l~~~~~~~~ii~~s~~~~~ 87 (126)
T 1dbw_A 12 EEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMS----GVELLRNLGDLKINIPSIVITGHGDV 87 (126)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECCSTTSC----HHHHHHHHHHTTCCCCEEEEECTTCH
T ss_pred CHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCC----HHHHHHHHHhcCCCCCEEEEECCCCH
Confidence 4555677888888888876421 23579999964322112 23345555443 44554 5554321
Q ss_pred cch-hhhcCCc-cEEEcCCchhHHHHHHHHHhc
Q 013195 137 GSR-DLKELEG-VSIVGVQQIDRVVEVVEETLK 167 (448)
Q Consensus 137 ~~~-e~~~~~~-d~vvg~~~~~~i~~~l~~~~~ 167 (448)
... +...... +++.-+-....+.+.++....
T Consensus 88 ~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 88 PMAVEAMKAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp HHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 111 1112333 467777677778777776554
No 86
>1f07_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin reductase; (beta, alpha)8 barrel; HET: MPO; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.1.16.3
Probab=33.07 E-value=2.8e+02 Score=25.64 Aligned_cols=105 Identities=18% Similarity=0.313 Sum_probs=65.1
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeec--C-----CcChhHHHH
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT--N-----PPFILEHLK 293 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~--~-----p~~i~~~l~ 293 (448)
.++++.++.++..-+.|+..+|+.+ ..+.. +-.-++-.+.... .++++++. . |-.+.+...
T Consensus 11 ~~~~~~~~~a~~AE~~Gfd~~w~~e-h~~~~------~p~~~la~~Aa~T-----~rI~lgt~v~~~~~~~P~~~A~~~a 78 (321)
T 1f07_A 11 EPIEKIVKLVKLAEDVGFEYAWITD-HYNNK------NVYETLALIAEGT-----ETIKLGPGVTNPYVRSPAITASAIA 78 (321)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEECC-CTTSS------CHHHHHHHHHHTC-----SSCEEEESSBCSSSBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecc-cccCC------CHHHHHHHHHHhC-----CcceEeeeeecCCCCCHHHHHHHHH
Confidence 4688889999888889999999865 33221 3356777777654 35666642 2 222222222
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhcCCCC--CHHHHHHHHHHHHHh
Q 013195 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY--TLSDFRTVVDTLIEL 342 (448)
Q Consensus 294 el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~--t~e~~~~~i~~ir~~ 342 (448)
.| +.+..+ ++.+|+=+|.+.....++..+ ..+.+.+.++.+++.
T Consensus 79 tL-d~ls~G----R~~lGiG~G~~~~~~~~G~~~~~r~~~~~E~l~~l~~l 124 (321)
T 1f07_A 79 TL-DELSNG----RATLGIGPGDKATFDALGIEWVKPVSTIRDAIAMMRTL 124 (321)
T ss_dssp HH-HHHTTS----CBCEEECCCCHHHHHHTTCCCCCHHHHHHHHHHHHHHH
T ss_pred HH-HHHcCC----CeEEEEecCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 22 222222 567777788877778888765 356677777777765
No 87
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=32.68 E-value=1.9e+02 Score=23.07 Aligned_cols=99 Identities=10% Similarity=0.062 Sum_probs=55.3
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeee-c--C---------CC--CCcEEEEeecccccchHHHHHHHHHHHhc-
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-D--N---------SE--EADIWLINTCTVKSPSQSAMDTLIAKCKS- 123 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~-~--~---------~~--~aDvv~intctv~~~a~~~~~~~i~~~~~- 123 (448)
.+|.|+ .-|....+.+...|++.||+++ . + .. ..|+|+++...-... ...+++++++
T Consensus 37 ~~Iliv----dd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~----g~~~~~~lr~~ 108 (157)
T 3hzh_A 37 FNVLIV----DDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMD----GITCLSNIMEF 108 (157)
T ss_dssp CEEEEE----CSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSC----HHHHHHHHHHH
T ss_pred eEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCcc----HHHHHHHHHhh
Confidence 466665 3477888899999999999876 2 1 12 579999965332222 2334444443
Q ss_pred -CCCCEE-EEccccccch-hhhcCCcc-EEEcCCchhHHHHHHHHH
Q 013195 124 -AKKPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEET 165 (448)
Q Consensus 124 -~~~~vV-vgGc~a~~~~-e~~~~~~d-~vvg~~~~~~i~~~l~~~ 165 (448)
++.+|| +++....... +.....++ ++.-+-....+.+.|...
T Consensus 109 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 154 (157)
T 3hzh_A 109 DKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSV 154 (157)
T ss_dssp CTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHT
T ss_pred CCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 344555 4443211111 11233344 566666666777776654
No 88
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*
Probab=32.60 E-value=1.7e+02 Score=29.15 Aligned_cols=65 Identities=12% Similarity=0.084 Sum_probs=38.4
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC------CCHHHHHHHHHHhCCCC-CcceEEEeecCCc
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG------VNLPILLNAIVAELPPD-GSTMLRIGMTNPP 286 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~------~~l~~ll~~l~~~~~~~-~~~~iri~~~~p~ 286 (448)
.+.+.+++.++.+.+.|+.-|-+.++.+.. |...- .++..+++++.+..+.. ....+.+.+.+|.
T Consensus 209 ~~~~~al~~A~~mv~~GAdIIDIGgeSTrP-Ga~~Vs~~EE~~Rv~pvI~~l~~~~~~~~~~vpISIDT~~~~ 280 (442)
T 3mcm_A 209 FDDNQRKLNLDELIQSGAEIIDIGAESTKP-DAKPISIEEEFNKLNEFLEYFKSQLANLIYKPLVSIDTRKLE 280 (442)
T ss_dssp SCCCHHHHHHHHHHHHTCSEEEEECCCCCC-----CCHHHHHHHHHHHHHHHHHHTTTCSSCCEEEEECCCHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCCCHH
Confidence 578899999999999999988776643322 22110 12334466665421100 1357888876664
No 89
>1z69_A COG2141, coenzyme F420-dependent N(5),N(10)- methylenetetrahydromethanopterin reductase; (alpha, beta)8 barrel, oxidoreductase; HET: F42 1PG; 2.61A {Methanosarcina barkeri}
Probab=32.06 E-value=2.8e+02 Score=25.72 Aligned_cols=106 Identities=14% Similarity=0.264 Sum_probs=65.7
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeec-------CCcChhHHHH
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-------NPPFILEHLK 293 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~-------~p~~i~~~l~ 293 (448)
.+++++++.++..-+.|+..+|+.+ ..+. .+-.-++-.+..... ++++++. +|-.+.+...
T Consensus 11 ~~~~~~~~~A~~AE~~Gfd~~w~~e-h~~~------~dp~~~laalAa~T~-----rI~lgt~v~~~~~~~P~~~A~~~a 78 (327)
T 1z69_A 11 DPALKIAYYAKLSEQQGFDHVWITD-HYNN------RDVYSTLTVLALNTN-----SIKIGPGVTNSYTRNPAITASSIA 78 (327)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEECC-CTTS------SCHHHHHHHHHHTCS-----SSEEEESCEESSSBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEecc-cccc------cCHHHHHHHHHHhCC-----cceEeeeeccCCCCCHHHHHHHHH
Confidence 4688899999888889999999865 3322 133567777776543 4555532 2322333332
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhcCCCC--CHHHHHHHHHHHHHhC
Q 013195 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY--TLSDFRTVVDTLIELV 343 (448)
Q Consensus 294 el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~--t~e~~~~~i~~ir~~~ 343 (448)
.|. .+..+ ++.+|+=+|.+.....++..+ ..+.+.+.++.+++.+
T Consensus 79 tLd-~ls~G----R~~lGvg~G~~~~~~~~G~~~~~r~~~~~E~l~~l~~lw 125 (327)
T 1z69_A 79 SIA-EISGG----RAVLGLGPGDKATFDAMGIAWKKPLATTKEAIQAIRDFI 125 (327)
T ss_dssp HHH-HHHTS----CBCEEEECCCHHHHHHTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHH-HHcCC----CeEEEecCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHh
Confidence 222 22222 566777788877778888765 3566777777777653
No 90
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=31.83 E-value=2.8e+02 Score=24.86 Aligned_cols=45 Identities=7% Similarity=0.095 Sum_probs=34.4
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCC
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~ 271 (448)
.|..++++.++-++.+.+.|++-|.++-.+ ..-.+.++++.+.++
T Consensus 40 ir~~~~~~a~~~a~al~~gGi~~iEvt~~t---------~~a~e~I~~l~~~~~ 84 (232)
T 4e38_A 40 IAIDNAEDIIPLGKVLAENGLPAAEITFRS---------DAAVEAIRLLRQAQP 84 (232)
T ss_dssp ECCSSGGGHHHHHHHHHHTTCCEEEEETTS---------TTHHHHHHHHHHHCT
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC---------CCHHHHHHHHHHhCC
Confidence 456678889999999999999999885421 123688888888775
No 91
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=31.78 E-value=1.6e+02 Score=21.82 Aligned_cols=89 Identities=12% Similarity=0.185 Sum_probs=46.9
Q ss_pred ChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhc--CCCCE-EEEccccc
Q 013195 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPL-VVAGCVPQ 136 (448)
Q Consensus 71 N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~--~~~~v-VvgGc~a~ 136 (448)
+....+.+...|+..||.+... ....|+++++...-.... .++++++++ ++.+| ++++....
T Consensus 10 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g----~~~~~~l~~~~~~~~ii~~s~~~~~ 85 (116)
T 3a10_A 10 EPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISG----LEVAGEIRKKKKDAKIILLTAYSHY 85 (116)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCH----HHHHHHHHHHCTTCCEEEEESCGGG
T ss_pred CHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCH----HHHHHHHHccCCCCeEEEEECCcch
Confidence 5556677888888888876432 235799999653322222 233444433 34454 46554221
Q ss_pred cchhhhcCCc-cEEEcCCchhHHHHHHHH
Q 013195 137 GSRDLKELEG-VSIVGVQQIDRVVEVVEE 164 (448)
Q Consensus 137 ~~~e~~~~~~-d~vvg~~~~~~i~~~l~~ 164 (448)
......... +++.-+-....+...++.
T Consensus 86 -~~~~~~~g~~~~l~Kp~~~~~l~~~i~~ 113 (116)
T 3a10_A 86 -RSDMSSWAADEYVVKSFNFDELKEKVKK 113 (116)
T ss_dssp -GGCGGGGGSSEEEECCSSTHHHHHHHHH
T ss_pred -HHHHHhccccceEECCCCHHHHHHHHHH
Confidence 112222333 356665555666666654
No 92
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=31.67 E-value=97 Score=26.78 Aligned_cols=70 Identities=19% Similarity=0.293 Sum_probs=45.9
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeec-------CCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-E
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD-------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~-------~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vV-v 130 (448)
++|++ +||.....=.+.++..|...|..+.. ...+-|++++-|-+ ..+ ..+.+.++.+|++|.+|| +
T Consensus 48 ~~I~i--~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~DvvI~iS~S--G~t-~~~i~~~~~ak~~g~~vI~I 122 (200)
T 1vim_A 48 RSIFV--IGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVGISGS--GET-TSVVNISKKAKDIGSKLVAV 122 (200)
T ss_dssp SCEEE--ECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSS--SCC-HHHHHHHHHHHHHTCEEEEE
T ss_pred CEEEE--EEecHHHHHHHHHHHHHHhcCCeEEEeCCccccCCCCCCEEEEEeCC--CCc-HHHHHHHHHHHHCCCeEEEE
Confidence 45555 57777788888899999888875432 12345877774433 333 246677888888888765 6
Q ss_pred Ecc
Q 013195 131 AGC 133 (448)
Q Consensus 131 gGc 133 (448)
++-
T Consensus 123 T~~ 125 (200)
T 1vim_A 123 TGK 125 (200)
T ss_dssp ESC
T ss_pred ECC
Confidence 553
No 93
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=31.61 E-value=1.4e+02 Score=23.17 Aligned_cols=102 Identities=9% Similarity=0.059 Sum_probs=56.8
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhc----
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS---- 123 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~---- 123 (448)
++|.|+ .-|....+.+...|++.||++... ....|+|+++.-.- ... ..++++++++
T Consensus 7 ~~iLiv----dd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~-~~~---g~~~~~~l~~~~~~ 78 (140)
T 3grc_A 7 PRILIC----EDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLP-DQD---GVSLIRALRRDSRT 78 (140)
T ss_dssp SEEEEE----CSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCS-SSC---HHHHHHHHHTSGGG
T ss_pred CCEEEE----cCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCC-CCC---HHHHHHHHHhCccc
Confidence 455554 346777888899999999986432 24579999965322 221 2445555554
Q ss_pred CCCCEE-EEccccccchhhh--cCCcc-EEEcCCchhHHHHHHHHHhcC
Q 013195 124 AKKPLV-VAGCVPQGSRDLK--ELEGV-SIVGVQQIDRVVEVVEETLKG 168 (448)
Q Consensus 124 ~~~~vV-vgGc~a~~~~e~~--~~~~d-~vvg~~~~~~i~~~l~~~~~g 168 (448)
++.+|| +++.......... ...++ ++.-+-....+...|.....+
T Consensus 79 ~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 79 RDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp TTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 244555 4443221111102 22344 566666667777777766543
No 94
>4f54_A Uncharacterized protein; PF13590 family protein, DUF4136, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.60A {Bacteroides thetaiotaomicron}
Probab=31.45 E-value=37 Score=30.01 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCeeecCCCCCcEEEE
Q 013195 77 YMAGQLSAFGYALTDNSEEADIWLI 101 (448)
Q Consensus 77 ~~~~~L~~~G~~~~~~~~~aDvv~i 101 (448)
.+...|.+.||..+.+.+.||++|=
T Consensus 64 aV~~~L~akG~~~v~~~~~pDllV~ 88 (197)
T 4f54_A 64 AYTENMEAXGYQPAADXESADLGIQ 88 (197)
T ss_dssp HHHHHHHHTTCEECSSTTTCSEEEE
T ss_pred HHHHHHHhcCceecCCCCCCCEEEE
Confidence 4567788899999987889998765
No 95
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=31.42 E-value=2.1e+02 Score=26.46 Aligned_cols=69 Identities=10% Similarity=0.028 Sum_probs=42.6
Q ss_pred ceEEEEecCCccChhH-HHHHHHHHHhCC-Ceee--c-------------CCCCCcEEEEeecccccchHHHHHHHHHHH
Q 013195 59 ETIYMKTFGCSHNQSD-SEYMAGQLSAFG-YALT--D-------------NSEEADIWLINTCTVKSPSQSAMDTLIAKC 121 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~d-se~~~~~L~~~G-~~~~--~-------------~~~~aDvv~intctv~~~a~~~~~~~i~~~ 121 (448)
.|+-|++=+|.+.-.. .+.|+..|++.| |+++ . +..++|+||+|++.-.-.. + ..+.+.++
T Consensus 5 ~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~~~~~~~l~~-~-~~~~l~~y 82 (281)
T 4e5v_A 5 IKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDYNGDSWPE-E-TNRRFLEY 82 (281)
T ss_dssp EEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEEECCCSSCCCH-H-HHHHHHHH
T ss_pred eEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEEEeCCCCcCCH-H-HHHHHHHH
Confidence 4677778888887322 378889999998 7763 2 2356899999886432222 2 22334444
Q ss_pred hcCCCCEE
Q 013195 122 KSAKKPLV 129 (448)
Q Consensus 122 ~~~~~~vV 129 (448)
-+.|.-+|
T Consensus 83 V~~Ggglv 90 (281)
T 4e5v_A 83 VQNGGGVV 90 (281)
T ss_dssp HHTTCEEE
T ss_pred HHcCCCEE
Confidence 45565554
No 96
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=30.38 E-value=38 Score=26.93 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=32.7
Q ss_pred HHHHHHHHhCCCeee--cC-------CCCCcEEEEeecccccchHHH--HHHHHHHHhc--CCCCEEEEcccc
Q 013195 76 EYMAGQLSAFGYALT--DN-------SEEADIWLINTCTVKSPSQSA--MDTLIAKCKS--AKKPLVVAGCVP 135 (448)
Q Consensus 76 e~~~~~L~~~G~~~~--~~-------~~~aDvv~intctv~~~a~~~--~~~~i~~~~~--~~~~vVvgGc~a 135 (448)
+.++..|.+.|+++. +- ..++|.++|-|-+.....-.. +...++++.. .|+++.+=|++.
T Consensus 18 ~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~~l~~k~~~~~~t~g 90 (137)
T 2fz5_A 18 NEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPAMGSEELEDSVVEPFFTDLAPKLKGKKVGLFGSYG 90 (137)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCCHHHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGGGCSSCEEEEEEEES
T ss_pred HHHHHHHHhCCCeEEEEEcccCCHHHHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhhhcCCCEEEEEEecC
Confidence 345566666787652 21 236899999655542221112 5566666543 456666555544
No 97
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=30.25 E-value=47 Score=26.71 Aligned_cols=82 Identities=12% Similarity=0.096 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCCeeec---C---------CCCCcEEEEeecccccchHHHHHHHHHHHhcCCCC-EEEEccccccchhhh
Q 013195 76 EYMAGQLSAFGYALTD---N---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP-LVVAGCVPQGSRDLK 142 (448)
Q Consensus 76 e~~~~~L~~~G~~~~~---~---------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~-vVvgGc~a~~~~e~~ 142 (448)
+.+...|++.||+++. + ....|+|++.-.--.-. -.++++++|+++.+ |+++|...... ..
T Consensus 22 ~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~DlvllDi~mP~~~----G~el~~~lr~~~ipvI~lTa~~~~~~--~~ 95 (123)
T 2lpm_A 22 MLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAIIDVNLDGEP----SYPVADILAERNVPFIFATGYGSKGL--DT 95 (123)
T ss_dssp HHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEECSSSSSCC----SHHHHHHHHHTCCSSCCBCTTCTTSC--CS
T ss_pred HHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEEecCCCCCC----HHHHHHHHHcCCCCEEEEecCccHHH--HH
Confidence 3455566666666432 1 24579999854322111 23456666667765 45666421111 11
Q ss_pred cCC-ccEEEcCCchhHHHHHHH
Q 013195 143 ELE-GVSIVGVQQIDRVVEVVE 163 (448)
Q Consensus 143 ~~~-~d~vvg~~~~~~i~~~l~ 163 (448)
+.. .+++.-+-....+.+.|.
T Consensus 96 ~~g~~~yl~KP~~~~~L~~~l~ 117 (123)
T 2lpm_A 96 RYSNIPLLTKPFLDSELEAVLV 117 (123)
T ss_dssp SSCSCSCBCSSSSHHHHHHHHS
T ss_pred hCCCCcEEECCCCHHHHHHHHH
Confidence 222 234555555555555554
No 98
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=29.82 E-value=1.3e+02 Score=25.10 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=44.7
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhCCCeeec------------CCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCC
Q 013195 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD------------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP 127 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~------------~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~ 127 (448)
+|++. ||.....-.++++..|...|+.... ...+-|++++-|-+ ..+ ..+.+.++.++++|.+
T Consensus 51 ~I~i~--G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~s--G~t-~~~~~~~~~ak~~g~~ 125 (183)
T 2xhz_A 51 KVVVM--GMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNS--GES-SEITALIPVLKRLHVP 125 (183)
T ss_dssp CEEEE--ECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEEECSS--SCC-HHHHHHHHHHHTTTCC
T ss_pred eEEEE--eecHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEEEeCC--CCC-HHHHHHHHHHHHCCCC
Confidence 67765 5556666678888899888876422 12345777774433 333 2467778888888876
Q ss_pred EE-EEcc
Q 013195 128 LV-VAGC 133 (448)
Q Consensus 128 vV-vgGc 133 (448)
+| +++-
T Consensus 126 vi~IT~~ 132 (183)
T 2xhz_A 126 LICITGR 132 (183)
T ss_dssp EEEEESC
T ss_pred EEEEECC
Confidence 55 6653
No 99
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=29.79 E-value=48 Score=26.60 Aligned_cols=61 Identities=13% Similarity=0.238 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCeee--c-------CCCCCcEEEEeecccccc-hHH-HHHHHHHHHhc--CCCCEEEEccccc
Q 013195 76 EYMAGQLSAFGYALT--D-------NSEEADIWLINTCTVKSP-SQS-AMDTLIAKCKS--AKKPLVVAGCVPQ 136 (448)
Q Consensus 76 e~~~~~L~~~G~~~~--~-------~~~~aDvv~intctv~~~-a~~-~~~~~i~~~~~--~~~~vVvgGc~a~ 136 (448)
+.|+..|.+.|+++. + +..++|+++|-|.|.-.. ... .+...++++.. .|+++.+=|++.+
T Consensus 17 ~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~l~~k~~~~f~t~g~ 90 (138)
T 5nul_A 17 ELIAKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAMTDEVLEESEFEPFIEEISTKISGKKVALFGSYGW 90 (138)
T ss_dssp HHHHHHHHHTTCCCEEEEGGGCCHHHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGGCTTCEEEEEEEESS
T ss_pred HHHHHHHHHCCCeEEEEEhhhCCHHHHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhhcCCCEEEEEEecCC
Confidence 456777888887542 1 125789999966554321 111 34555666653 4667766666554
No 100
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=29.74 E-value=2.1e+02 Score=22.59 Aligned_cols=101 Identities=11% Similarity=0.128 Sum_probs=55.0
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhc--CC
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AK 125 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~--~~ 125 (448)
.+|.++ .-+....+.+...|...||++... ....|+|+++...-.... ..+++++++ +.
T Consensus 8 ~~iLiv----dd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g----~~~~~~l~~~~~~ 79 (154)
T 2rjn_A 8 YTVMLV----DDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGG----EVFLEQVAKSYPD 79 (154)
T ss_dssp CEEEEE----CSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCH----HHHHHHHHHHCTT
T ss_pred CeEEEE----cCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCH----HHHHHHHHHhCCC
Confidence 355554 346677788999999999987532 345799999654322222 234444443 34
Q ss_pred CCEE-EEccccccch-hhhcCC-cc-EEEcCCchhHHHHHHHHHhc
Q 013195 126 KPLV-VAGCVPQGSR-DLKELE-GV-SIVGVQQIDRVVEVVEETLK 167 (448)
Q Consensus 126 ~~vV-vgGc~a~~~~-e~~~~~-~d-~vvg~~~~~~i~~~l~~~~~ 167 (448)
.+|| +++....... +..... ++ ++.-+-....+...|.....
T Consensus 80 ~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 80 IERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp SEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHH
Confidence 4554 4443221111 111223 44 56666666677777765543
No 101
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=29.64 E-value=1.7e+02 Score=21.70 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=47.9
Q ss_pred ChhHHHHHHHHHHhCCCeee---cC---------CCCCcEEEEeecccccchHHHHHHHHHHHhc--CCCCEE-EEcccc
Q 013195 71 NQSDSEYMAGQLSAFGYALT---DN---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPLV-VAGCVP 135 (448)
Q Consensus 71 N~~dse~~~~~L~~~G~~~~---~~---------~~~aDvv~intctv~~~a~~~~~~~i~~~~~--~~~~vV-vgGc~a 135 (448)
+....+.+...|+..||+++ .+ ....|+++++...-... ..++++++++ ++.+|| +++...
T Consensus 11 ~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~----g~~~~~~l~~~~~~~~ii~~s~~~~ 86 (120)
T 1tmy_A 11 AAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMN----GIDAIKEIMKIDPNAKIIVCSAMGQ 86 (120)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGC----HHHHHHHHHHHCTTCCEEEEECTTC
T ss_pred cHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCc----HHHHHHHHHhhCCCCeEEEEeCCCC
Confidence 55667778888988899843 12 12479999964332112 2334444443 344554 555432
Q ss_pred ccch-hhhcCCc-cEEEcCCchhHHHHHHHHH
Q 013195 136 QGSR-DLKELEG-VSIVGVQQIDRVVEVVEET 165 (448)
Q Consensus 136 ~~~~-e~~~~~~-d~vvg~~~~~~i~~~l~~~ 165 (448)
.... +...... +++.-+-....+.+.++..
T Consensus 87 ~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 87 QAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV 118 (120)
T ss_dssp HHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcceeEeCCCCHHHHHHHHHHH
Confidence 1111 1112333 3566666666676666543
No 102
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=29.59 E-value=75 Score=27.26 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=45.4
Q ss_pred ceEEEEecCCccChhHHHHHHHHH------HhCCCeeec---------------------------CCCCCcEEEEeecc
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQL------SAFGYALTD---------------------------NSEEADIWLINTCT 105 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L------~~~G~~~~~---------------------------~~~~aDvv~intct 105 (448)
++|++ +||.....-.+.++..| ...|..... ...+-|++++=|-+
T Consensus 46 ~~I~i--~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~DvvI~iS~S 123 (199)
T 1x92_A 46 GKILS--CGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDYSYNEVFSKQIRALGQPGDVLLAISTS 123 (199)
T ss_dssp CCEEE--ECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCCHHHHHHHHHHTCGGGTTHHHHHHHCCTTCEEEEECSS
T ss_pred CEEEE--EcCchhHHHHHHHHHHHhcCcccCCCCCceEecCCChhHHHHhhcCccHHHHHHHHHHhCCCCCCEEEEEeCC
Confidence 45665 57777788888888888 556765431 12445887774544
Q ss_pred cccchHHHHHHHHHHHhcCCCCEE-EEcc
Q 013195 106 VKSPSQSAMDTLIAKCKSAKKPLV-VAGC 133 (448)
Q Consensus 106 v~~~a~~~~~~~i~~~~~~~~~vV-vgGc 133 (448)
= .+ ..+.+.++.+|++|.+|| +++.
T Consensus 124 G--~t-~~~i~~~~~ak~~g~~vI~IT~~ 149 (199)
T 1x92_A 124 G--NS-ANVIQAIQAAHDREMLVVALTGR 149 (199)
T ss_dssp S--CC-HHHHHHHHHHHHTTCEEEEEECT
T ss_pred C--CC-HHHHHHHHHHHHCCCEEEEEECC
Confidence 3 32 245677888999998765 6664
No 103
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=29.58 E-value=3.4e+02 Score=25.55 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=35.6
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCC--CCCHHHHHHHHHHhC
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAEL 270 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~--~~~l~~ll~~l~~~~ 270 (448)
.-..++++|++++....+.|..-+.+.--|.- -|... ...+.++++.|.+..
T Consensus 26 ~lPvTpeEia~~A~~~~~AGAaivHlHvRdp~-dG~ps~d~~~~~e~~~~IR~~~ 79 (311)
T 3e49_A 26 YLPVTPDEVAQASIGAAEAGAAVIHLHARDPR-DGRPTQDPAAFAEFLPRIKSNT 79 (311)
T ss_dssp TSCCSHHHHHHHHHHHHHHTCSEEEECEECTT-TCCEECCHHHHTTHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEeecCCC-CCCcCCCHHHHHHHHHHHHHhC
Confidence 34567999999999999999988887765421 12211 124677888887654
No 104
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=29.57 E-value=2.7e+02 Score=24.69 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=31.5
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCC
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~ 271 (448)
|..++++.++-++.+.+.|++-|.+..-+ ..-.+.++++.+.++
T Consensus 33 r~~~~~~~~~~~~al~~gGv~~iel~~k~---------~~~~~~i~~l~~~~~ 76 (225)
T 1mxs_A 33 TIAREEDILPLADALAAGGIRTLEVTLRS---------QHGLKAIQVLREQRP 76 (225)
T ss_dssp CCSCGGGHHHHHHHHHHTTCCEEEEESSS---------THHHHHHHHHHHHCT
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEecCC---------ccHHHHHHHHHHhCc
Confidence 44567788888999999999988886311 123577888887764
No 105
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*
Probab=29.39 E-value=2.5e+02 Score=27.44 Aligned_cols=114 Identities=13% Similarity=0.140 Sum_probs=55.3
Q ss_pred HHHHHHHHHCCCc--EEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCc
Q 013195 227 VGRVRTVIADGVK--EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (448)
Q Consensus 227 v~ei~~l~~~G~~--ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~ 304 (448)
+.|+..+.+.|+. .|.+.+.. .. .+-++.+.+. +...+.+.+ . ++++.+.+... .
T Consensus 109 ~~E~~~~r~~G~~~~~Il~~g~~-----k~-----~~~l~~a~~~----~v~~~~vds--~----~el~~l~~~a~--~- 165 (419)
T 2plj_A 109 TGEVELVASEGVPADLTIHTHPI-----KR-----DADIRDALAY----GCNVFVVDN--L----NELEKFKAYRD--D- 165 (419)
T ss_dssp HHHHHHHHHTTCCGGGEEECCSS-----CC-----HHHHHHHHHH----TCCEEEECS--H----HHHHTTGGGTT--T-
T ss_pred HHHHHHHHHcCCChhhEEEeCCC-----CC-----HHHHHHHHHC----CCCEEEeCC--H----HHHHHHHHhcC--C-
Confidence 5788888888984 57765521 11 2334444332 222233331 1 22222222221 1
Q ss_pred ccccccccCCCCH-HHHHhcCC-CCCHHHHHHHHHHHHHhCCCCEEEE-EEEEeCCCCCHHHHHH
Q 013195 305 YSFLHVPVQSGSD-AVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIAT-DIICGFPGETDEDFNQ 366 (448)
Q Consensus 305 ~~~l~iglES~s~-~vLk~m~R-~~t~e~~~~~i~~ir~~~pgi~i~~-~~IvG~PgET~ed~~~ 366 (448)
..+++-+.++.+ .....|+| |.+.+++.++++.+++. ++.+.. .+=+|--..+.+.+.+
T Consensus 166 -~~v~lrvd~g~~~~~~~~~~RfG~~~~e~~~~~~~~~~~--~l~l~Gl~~H~gs~~~~~~~~~~ 227 (419)
T 2plj_A 166 -VELLVRLSFRNSEAFADLSKKFGCSPEQALVIIETAKEW--NIRIKGLSFHVGSQTTNPNKYVE 227 (419)
T ss_dssp -CEEEEEBCC---------CCCSCBCHHHHHHHHHHHHHT--TCEEEEEECCCCTTCCCTHHHHH
T ss_pred -CCEEEEEcCCCCCCCCCCCCCCcCCHHHHHHHHHHHHhC--CCcEEEEEEECCCCCCCHHHHHH
Confidence 145555555432 12234787 57899999999999886 776543 2224543333344333
No 106
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=29.34 E-value=2.4e+02 Score=27.55 Aligned_cols=45 Identities=7% Similarity=-0.168 Sum_probs=28.4
Q ss_pred cCC-CCCHHHHHHHHHHHHHhCCCCEEE-EEEEEeCCCCCHHHHHHHH
Q 013195 323 MNR-EYTLSDFRTVVDTLIELVPGMQIA-TDIICGFPGETDEDFNQTV 368 (448)
Q Consensus 323 m~R-~~t~e~~~~~i~~ir~~~pgi~i~-~~~IvG~PgET~ed~~~tl 368 (448)
|+| |.+.+++.++++.+++. |++.+. ..+.+|--..+.+.+.+.+
T Consensus 174 ~sRfG~~~~e~~~l~~~~~~~-~~l~l~Gl~~H~gs~~~~~~~~~~~~ 220 (425)
T 2qgh_A 174 ENKFGVGEKEALEMFLWAKKS-AFLEPVSVHFHIGSQLLDLEPIIEAS 220 (425)
T ss_dssp TSSSSBCHHHHHHHHHHHHHC-SSEEEEEEECCCBSSBCCHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhC-CCccEEEEEEECCCCCCCHHHHHHHH
Confidence 666 57889999999988774 777643 3444564333444444443
No 107
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=29.25 E-value=1.2e+02 Score=25.89 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=44.6
Q ss_pred ceEEEEecCCccChhHHHHHHHHHH------hCCCeeecC---------------------------CCCCcEEEEeecc
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLS------AFGYALTDN---------------------------SEEADIWLINTCT 105 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~------~~G~~~~~~---------------------------~~~aDvv~intct 105 (448)
++|++ +||.....-.+.+...|. ..|+..... ..+-|++++=|-+
T Consensus 42 ~~I~i--~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~~~~~~DvvI~iS~S 119 (196)
T 2yva_A 42 NKILC--CGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTR 119 (196)
T ss_dssp CCEEE--EESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHHHCCTTCEEEEECSS
T ss_pred CEEEE--EeCchhhHHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 45655 577777778888888887 567654321 2344777774444
Q ss_pred cccchHHHHHHHHHHHhcCCCCEE-EEcc
Q 013195 106 VKSPSQSAMDTLIAKCKSAKKPLV-VAGC 133 (448)
Q Consensus 106 v~~~a~~~~~~~i~~~~~~~~~vV-vgGc 133 (448)
= .+ ..+.+.++.+|++|.++| +++.
T Consensus 120 G--~t-~~~i~~~~~ak~~g~~vI~IT~~ 145 (196)
T 2yva_A 120 G--NS-RDIVKAVEAAVTRDMTIVALTGY 145 (196)
T ss_dssp S--CC-HHHHHHHHHHHHTTCEEEEEECT
T ss_pred C--CC-HHHHHHHHHHHHCCCEEEEEeCC
Confidence 3 22 245677888899998755 6664
No 108
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=29.18 E-value=3.7e+02 Score=25.35 Aligned_cols=137 Identities=14% Similarity=0.182 Sum_probs=78.6
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCC----C---C---CCHHHHHHHHHHhCCCCCcceEEEeecCCcCh
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD----I---G---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d----~---~---~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i 288 (448)
+..+++.+++.++.+.+.|..-|-+.++.+.. |.+ . . .++..++++|.+.. ...+.+.+.+|.-+
T Consensus 44 ~~~~~~~al~~A~~~v~~GAdIIDIGgeSTrP-ga~~~~~~V~~~eE~~Rv~pvI~~l~~~~----~vpISIDT~~~~Va 118 (314)
T 3tr9_A 44 PHLDLNSALRTAEKMVDEGADILDIGGEATNP-FVDIKTDSPSTQIELDRLLPVIDAIKKRF----PQLISVDTSRPRVM 118 (314)
T ss_dssp BCCSHHHHHHHHHHHHHTTCSEEEEECCCSCT-TC-----CHHHHHHHHHHHHHHHHHHHHC----CSEEEEECSCHHHH
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCCCCCC-CcccccCCCCHHHHHHHHHHHHHHHHhhC----CCeEEEeCCCHHHH
Confidence 66789999999999999999988876654332 222 0 0 12455666666542 35788887666422
Q ss_pred hHHHHHHHHHHhCCCcccccccccCCCCHHHHHhc-----------CCC--CC-------------HHHHHHHHHHHHHh
Q 013195 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM-----------NRE--YT-------------LSDFRTVVDTLIEL 342 (448)
Q Consensus 289 ~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m-----------~R~--~t-------------~e~~~~~i~~ir~~ 342 (448)
.. ..+ ....+.+-++-+ + .++++... .++ .+ .+.+.+.++.+.++
T Consensus 119 ~a----Al~--aGa~iINDVsg~-~--~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~~ 189 (314)
T 3tr9_A 119 RE----AVN--TGADMINDQRAL-Q--LDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKKA 189 (314)
T ss_dssp HH----HHH--HTCCEEEETTTT-C--STTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HH----HHH--cCCCEEEECCCC-C--chHHHHHHHHhCCeEEEECCCCCCcccccccccchHHHHHHHHHHHHHHHHHc
Confidence 21 111 122334444322 1 33444321 111 11 35567788888888
Q ss_pred CCCC---EEEEEEEEe---CCCCCHHHHHHHHHHHH
Q 013195 343 VPGM---QIATDIICG---FPGETDEDFNQTVNLIK 372 (448)
Q Consensus 343 ~pgi---~i~~~~IvG---~PgET~ed~~~tl~~i~ 372 (448)
|+ .+..|=-+| | |.|.++=.++++-+.
T Consensus 190 --GI~~~~IilDPG~G~~~F-~Kt~~~n~~lL~~l~ 222 (314)
T 3tr9_A 190 --GISEDRIIIDPGFGQGNY-GKNVSENFYLLNKLP 222 (314)
T ss_dssp --TCCGGGEEEECCCCSGGG-CCCHHHHHHHHHTTH
T ss_pred --CCCHhHEEEeCCCCchhh-cCCHHHHHHHHHHHH
Confidence 87 477787778 7 677765444444433
No 109
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=29.14 E-value=2.4e+02 Score=24.84 Aligned_cols=132 Identities=11% Similarity=0.063 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCc
Q 013195 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (448)
Q Consensus 225 ~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~ 304 (448)
+.++.++.+.+.|+..+.+.+.|-...+. ..+ ++++++.+... ..-+.-+.++. .+. +..++..+
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~---~~~-~~i~~i~~~~~---ipv~v~ggI~~---~~~---~~~~l~~G-- 97 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFGTG---DNR-ALIAEVAQAMD---IKVELSGGIRD---DDT---LAAALATG-- 97 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSC---CCH-HHHHHHHHHCS---SEEEEESSCCS---HHH---HHHHHHTT--
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhcCC---ChH-HHHHHHHHhcC---CcEEEECCcCC---HHH---HHHHHHcC--
Confidence 44555677778999999988754322222 346 88999987642 22222222221 112 33334332
Q ss_pred ccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEE------EeCCCCCHHHHHHHHHHHHhcCCCe
Q 013195 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII------CGFPGETDEDFNQTVNLIKEYKFPQ 378 (448)
Q Consensus 305 ~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~I------vG~PgET~ed~~~tl~~i~~l~~~~ 378 (448)
+..+++|.++..+ .+.+.+.++.+. . .+.+..+.- -|....+. +..+.++.+.+.+++.
T Consensus 98 ad~V~lg~~~l~~-----------p~~~~~~~~~~g-~--~~~~~l~~~~g~v~~~g~~~~~~-~~~e~~~~~~~~G~~~ 162 (244)
T 1vzw_A 98 CTRVNLGTAALET-----------PEWVAKVIAEHG-D--KIAVGLDVRGTTLRGRGWTRDGG-DLYETLDRLNKEGCAR 162 (244)
T ss_dssp CSEEEECHHHHHC-----------HHHHHHHHHHHG-G--GEEEEEEEETTEECCSSSCCCCC-BHHHHHHHHHHTTCCC
T ss_pred CCEEEECchHhhC-----------HHHHHHHHHHcC-C--cEEEEEEccCCEEEEcCcccCCC-CHHHHHHHHHhCCCCE
Confidence 5678887654321 233333333332 1 234444543 12211222 3444556667788888
Q ss_pred EEEEecee
Q 013195 379 VHISQFYP 386 (448)
Q Consensus 379 v~i~~~~p 386 (448)
+.++...+
T Consensus 163 i~~~~~~~ 170 (244)
T 1vzw_A 163 YVVTDIAK 170 (244)
T ss_dssp EEEEEC--
T ss_pred EEEeccCc
Confidence 87765543
No 110
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=28.96 E-value=2e+02 Score=22.13 Aligned_cols=102 Identities=10% Similarity=0.097 Sum_probs=58.5
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeecC-----------C-CCCcEEEEeecccccchHHHHHHHHHHHhcC-
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------S-EEADIWLINTCTVKSPSQSAMDTLIAKCKSA- 124 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~-----------~-~~aDvv~intctv~~~a~~~~~~~i~~~~~~- 124 (448)
..++.++ .-+....+.+...|++.||.+... . ...|+++++...-... ..++++++++.
T Consensus 15 ~~~iliv----dd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~----g~~~~~~l~~~~ 86 (138)
T 2b4a_A 15 PFRVTLV----EDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLS----IFSLLDIVKEQT 86 (138)
T ss_dssp CCEEEEE----CSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTCTTSC----HHHHHHHHTTSS
T ss_pred CCeEEEE----CCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCC----HHHHHHHHHhhC
Confidence 4466553 456777888999999999986432 2 4689999964332111 24556666654
Q ss_pred -CCCE-EEEccccccchhhhcCCccEEEcCCchhHHHHHHHHHhcC
Q 013195 125 -KKPL-VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKG 168 (448)
Q Consensus 125 -~~~v-VvgGc~a~~~~e~~~~~~d~vvg~~~~~~i~~~l~~~~~g 168 (448)
+.+| +++|-...... ...+..+++.-+-....+...|.....+
T Consensus 87 ~~~~ii~ls~~~~~~~~-~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 87 KQPSVLILTTGRHELIE-SSEHNLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp SCCEEEEEESCC--CCC-CSSSCEEEEESSCCHHHHHHHHHHTCCC
T ss_pred CCCCEEEEECCCCCHHH-HHHHHHheeeCCCCHHHHHHHHHHHHHh
Confidence 3444 45513333222 3233223566666667777777765443
No 111
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=28.85 E-value=69 Score=28.00 Aligned_cols=87 Identities=18% Similarity=0.159 Sum_probs=53.5
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccccc
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGS 138 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~ 138 (448)
.++.+++|+=..+.. +.+...| |+ |+... ++.+. +.+...++++++.|..+||||-.+...
T Consensus 95 ~kIavvg~~~~~~~~--~~~~~ll---~~---------~i~~~---~~~~~--~e~~~~i~~l~~~G~~vvVG~~~~~~~ 155 (196)
T 2q5c_A 95 NELALIAYKHSIVDK--HEIEAML---GV---------KIKEF---LFSSE--DEITTLISKVKTENIKIVVSGKTVTDE 155 (196)
T ss_dssp SEEEEEEESSCSSCH--HHHHHHH---TC---------EEEEE---EECSG--GGHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred CcEEEEeCcchhhHH--HHHHHHh---CC---------ceEEE---EeCCH--HHHHHHHHHHHHCCCeEEECCHHHHHH
Confidence 478999886665543 4455555 33 23332 44433 345678899999999999999776433
Q ss_pred hhhhcCCccEEEcCCchhHHHHHHHHHh
Q 013195 139 RDLKELEGVSIVGVQQIDRVVEVVEETL 166 (448)
Q Consensus 139 ~e~~~~~~d~vvg~~~~~~i~~~l~~~~ 166 (448)
.+ ++....++-....+.+...++++.
T Consensus 156 A~--~~Gl~~vli~sg~eSI~~Ai~eA~ 181 (196)
T 2q5c_A 156 AI--KQGLYGETINSGEESLRRAIEEAL 181 (196)
T ss_dssp HH--HTTCEEEECCCCHHHHHHHHHHHH
T ss_pred HH--HcCCcEEEEecCHHHHHHHHHHHH
Confidence 32 333345555555567777777653
No 112
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=28.71 E-value=3.3e+02 Score=25.03 Aligned_cols=82 Identities=17% Similarity=0.260 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCCCCCHHHHHHH
Q 013195 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406 (448)
Q Consensus 327 ~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R 406 (448)
.|.+++...++.+.+..+ +.+.+|+=.|| |.+.+++.+|+..+.+.+..-+++=--...+|. +-+|.++..+|
T Consensus 59 vt~~em~~~~~~I~~~~~-~pviaD~d~Gy-g~~~~~~~~~v~~l~~aGaagv~iED~~~~~~k-----~l~~~~e~~~~ 131 (275)
T 2ze3_A 59 LTRDEMGREVEAIVRAVA-IPVNADIEAGY-GHAPEDVRRTVEHFAALGVAGVNLEDATGLTPT-----ELYDLDSQLRR 131 (275)
T ss_dssp SCHHHHHHHHHHHHHHCS-SCEEEECTTCS-SSSHHHHHHHHHHHHHTTCSEEEEECBCSSSSS-----CBCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcC-CCEEeecCCCC-CCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCC-----ccCCHHHHHHH
Confidence 689999999999998855 67889999997 788999999999888899888877443222222 24677888888
Q ss_pred HHHHHHHHH
Q 013195 407 SRELTSVFE 415 (448)
Q Consensus 407 ~~~l~~~~~ 415 (448)
.+.+.+...
T Consensus 132 I~aa~~a~~ 140 (275)
T 2ze3_A 132 IEAARAAID 140 (275)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhHh
Confidence 777776654
No 113
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=28.38 E-value=2e+02 Score=22.01 Aligned_cols=105 Identities=11% Similarity=0.150 Sum_probs=56.5
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeec-C-----------CCCCcEEEEeecccccchHHHHHHHHHHHhcCC
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD-N-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~-~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~ 125 (448)
+.+|.++. -+....+.+...|++.||+++. . ....|+++++...-.......+.+.+++. .+
T Consensus 9 ~~~iLivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~--~~ 82 (140)
T 3cg0_A 9 LPGVLIVE----DGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAG--CN 82 (140)
T ss_dssp CCEEEEEC----CBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHH--SC
T ss_pred CceEEEEE----CCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhC--CC
Confidence 44565543 4567778888999999998763 1 13579999964332112222233334443 45
Q ss_pred CCEE-EEccccccch-hhhcCCcc-EEEcCCchhHHHHHHHHHhcC
Q 013195 126 KPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKG 168 (448)
Q Consensus 126 ~~vV-vgGc~a~~~~-e~~~~~~d-~vvg~~~~~~i~~~l~~~~~g 168 (448)
.+|| +++....... ......++ ++.-+-....+...|+....+
T Consensus 83 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 83 LPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp CCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 5555 5443221111 11133344 566666667777777765543
No 114
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=27.91 E-value=2.2e+02 Score=22.34 Aligned_cols=73 Identities=10% Similarity=0.126 Sum_probs=54.1
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccc---hHHHHHHHHHHHhcCCCCEEEEccccc
Q 013195 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSP---SQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~---a~~~~~~~i~~~~~~~~~vVvgGc~a~ 136 (448)
.+.+..+.-++...-++.+...|.... .....++|+-..|..- +...+..+.+++++.|..+++.|+.++
T Consensus 20 ~v~v~~~~G~L~f~~a~~~~~~l~~~~-------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~ 92 (130)
T 4dgh_A 20 ELAVYALEGPFFFAAAETFERVMGSIQ-------ETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANSR 92 (130)
T ss_dssp TEEEEECCSSCCHHHHHHHHHHHHHSS-------SCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCCHH
T ss_pred CEEEEEEeeeEeehhHHHHHHHHHHhc-------cCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 477888888999999999999987531 3456788876555442 345566677788888999999998765
Q ss_pred cch
Q 013195 137 GSR 139 (448)
Q Consensus 137 ~~~ 139 (448)
...
T Consensus 93 v~~ 95 (130)
T 4dgh_A 93 VSQ 95 (130)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 115
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=27.73 E-value=2.1e+02 Score=22.01 Aligned_cols=101 Identities=9% Similarity=-0.023 Sum_probs=55.6
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhc--C
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--A 124 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~--~ 124 (448)
+.+|.++. -+....+.+...|+..||++... ....|+++++...-... ...+++++++ .
T Consensus 7 ~~~iLivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~----g~~~~~~l~~~~~ 78 (142)
T 3cg4_A 7 KGDVMIVD----DDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMD----GWDTIRAILDNSL 78 (142)
T ss_dssp CCEEEEEC----SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSC----HHHHHHHHHHTTC
T ss_pred CCeEEEEc----CCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCC----HHHHHHHHHhhcc
Confidence 34565543 46777888999999999987432 34579999965332212 2345555554 2
Q ss_pred --CCCEE-EEccccccch-hhhcCCcc-EEEcCCchhHHHHHHHHHh
Q 013195 125 --KKPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETL 166 (448)
Q Consensus 125 --~~~vV-vgGc~a~~~~-e~~~~~~d-~vvg~~~~~~i~~~l~~~~ 166 (448)
..+|| +++....... +.....++ ++.-+-....+...|....
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 125 (142)
T 3cg4_A 79 EQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFM 125 (142)
T ss_dssp CTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHH
Confidence 33444 5443221111 11122333 4556656666776666543
No 116
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=27.37 E-value=2.3e+02 Score=22.33 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=58.3
Q ss_pred CCCCceEEEEecCCccChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 013195 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (448)
Q Consensus 55 ~~~~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~ 123 (448)
+..+.+|.|+. -+....+.+...|.+.||.+... ....|+|+++...-.... ..+++++++
T Consensus 11 ~~~~~~ILivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g----~~~~~~l~~ 82 (153)
T 3hv2_A 11 VTRRPEILLVD----SQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMDG----PTLLARIHQ 82 (153)
T ss_dssp CCSCCEEEEEC----SCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCH----HHHHHHHHH
T ss_pred ccCCceEEEEC----CCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCCcCcH----HHHHHHHHh
Confidence 33456777653 46667788899999999987532 245799999654332222 334444443
Q ss_pred --CCCCEE-EEccccccch--hhhcCC-cc-EEEcCCchhHHHHHHHHHhc
Q 013195 124 --AKKPLV-VAGCVPQGSR--DLKELE-GV-SIVGVQQIDRVVEVVEETLK 167 (448)
Q Consensus 124 --~~~~vV-vgGc~a~~~~--e~~~~~-~d-~vvg~~~~~~i~~~l~~~~~ 167 (448)
++.+|| +++. ..... +..... ++ ++.-+-....+...|.....
T Consensus 83 ~~~~~~ii~~s~~-~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 83 QYPSTTRILLTGD-PDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALE 132 (153)
T ss_dssp HCTTSEEEEECCC-CCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHH
T ss_pred HCCCCeEEEEECC-CCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 344555 4442 22111 111333 44 56666666777777766543
No 117
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=27.20 E-value=1.7e+02 Score=24.91 Aligned_cols=37 Identities=14% Similarity=0.110 Sum_probs=26.7
Q ss_pred CCCCCceEEEEecCCccChhHHHHHHHHHHhCCCeee
Q 013195 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT 90 (448)
Q Consensus 54 ~~~~~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~ 90 (448)
.|..++++-++-.+-..+..|--.-...|++.||+++
T Consensus 3 ~m~~t~~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~ 39 (177)
T 4hcj_A 3 AMGKTNNILYVMSGQNFQDEEYFESKKIFESAGYKTK 39 (177)
T ss_dssp --CCCCEEEEECCSEEECHHHHHHHHHHHHHTTCEEE
T ss_pred ccccCCCEEEEECCCCccHHHHHHHHHHHHHCCCEEE
Confidence 4555566666556667788888888899999999873
No 118
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=27.13 E-value=1.6e+02 Score=28.13 Aligned_cols=76 Identities=14% Similarity=0.077 Sum_probs=48.6
Q ss_pred cEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCC-----CCCCC---CCCCHHHHH
Q 013195 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTG-----AYGRD---IGVNLPILL 263 (448)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~-----~yg~d---~~~~l~~ll 263 (448)
++.+|.+..|=.-. -.++..-| ...++++.++++++.+.+.|++.|.|.+.-.. ..|.. ...-+...+
T Consensus 41 LI~PlFV~eg~~~~---~~I~SMPG-v~r~sid~l~~~~~~~~~lGi~~v~LFgv~~~~~~KD~~gs~A~~~~g~v~rai 116 (342)
T 1h7n_A 41 LIFPLFISDNPDDF---TEIDSLPN-INRIGVNRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGI 116 (342)
T ss_dssp EEEEEEEESSTTCE---EECTTSTT-CEEECHHHHHHHHHHHHHTTCCEEEEEEECCSTTCCBTTCGGGGCTTSHHHHHH
T ss_pred ceeeEEEecCCCCc---eeCCCCCC-ceeeCHHHHHHHHHHHHHCCCCEEEEecccCccCCCCccccccCCCCChHHHHH
Confidence 44455565654322 23444444 44569999999999999999999999885221 11111 012367788
Q ss_pred HHHHHhCC
Q 013195 264 NAIVAELP 271 (448)
Q Consensus 264 ~~l~~~~~ 271 (448)
+.|++.++
T Consensus 117 r~iK~~~p 124 (342)
T 1h7n_A 117 KFIREYFP 124 (342)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHCC
Confidence 99988876
No 119
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=27.04 E-value=3.7e+02 Score=24.73 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=36.7
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC--CCHHHHHHHHHHhC
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAEL 270 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~--~~l~~ll~~l~~~~ 270 (448)
.-..++++|++++....+.|..-+.+.--|.. |.... ..+.++++.|.+..
T Consensus 24 ~lPvTpeEia~~A~~~~~AGAaivHlHvRd~~--G~~s~d~~~~~e~~~~IR~~~ 76 (275)
T 3no5_A 24 AVPITVSEQVESTQAAFEAGATLVHLHVRNDD--ETPTSNPDRFALVLEGIRKHA 76 (275)
T ss_dssp TSCCSHHHHHHHHHHHHHHTCCEEEECEECTT--SCEECCHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHccCcEEEEeecCCC--CCcCCCHHHHHHHHHHHHHhC
Confidence 44567999999999999999988887754432 33211 24788888887764
No 120
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=26.90 E-value=52 Score=28.22 Aligned_cols=34 Identities=29% Similarity=0.582 Sum_probs=27.4
Q ss_pred CCCceEEEEecCCccChhH-HHHHHHHHHhCCCeeecC
Q 013195 56 PGTETIYMKTFGCSHNQSD-SEYMAGQLSAFGYALTDN 92 (448)
Q Consensus 56 ~~~~~~~~~t~GC~~N~~d-se~~~~~L~~~G~~~~~~ 92 (448)
|+++||+ .||.+.-++ -+.+...|++.||++++.
T Consensus 19 ~~~MkIa---IgsDhaG~~lK~~i~~~L~~~G~eV~D~ 53 (166)
T 3s5p_A 19 PGSMKVA---FASDHGGRDLRMFLQQRASAHGYEVMDL 53 (166)
T ss_dssp CTTCEEE---EEECGGGHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEE---EEECchHHHHHHHHHHHHHHCCCEEEEc
Confidence 5556765 599999877 577889999999999875
No 121
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=26.72 E-value=3.5e+02 Score=24.35 Aligned_cols=145 Identities=12% Similarity=0.184 Sum_probs=74.8
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChh-HHHHHHHHHH
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL-EHLKEIAEVL 299 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~-~~l~el~~l~ 299 (448)
.++++.+ +.+.+.|+++|.++--.+. -|... .++...++++...+ ..++++ .|-... +..+.+.+.+
T Consensus 60 psi~~aL---~~l~~~G~~~vvV~Pl~l~-~G~~~-~di~~~v~~~~~~~-----~~i~~~--~pl~~~~~~~~~l~~~l 127 (264)
T 2xwp_A 60 DTPLQAL---QKLAAQGYQDVAIQSLHII-NGDEY-EKIVREVQLLRPLF-----TRLTLG--VPLLSSHNDYVQLMQAL 127 (264)
T ss_dssp CCHHHHH---HHHHHHTCCEEEEEECCSS-SSHHH-HHHHHHHHHHGGGC-----SEEEEE--CCSSCSHHHHHHHHHHH
T ss_pred CCHHHHH---HHHHhCCCCEEEEEeCccc-CcHHH-HHHHHHHHHHHhhC-----CceEEe--cCCCCCHHHHHHHHHHH
Confidence 3455555 4567889999998774332 33321 13334444443222 245553 443222 2223344444
Q ss_pred hCCCcccccccccCCCCHHHHHhcCCCC---CHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCC
Q 013195 300 RHPCVYSFLHVPVQSGSDAVLSAMNREY---TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376 (448)
Q Consensus 300 ~~~~~~~~l~iglES~s~~vLk~m~R~~---t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~ 376 (448)
... ... ..++..+=.|+.|. ....+..+-..+++. +..+...++=+.| .+.++++.+.+.+.
T Consensus 128 ~~~--~~~------~~~~~~lvl~gHGs~~~~~~~~~~~a~~l~~~--~~~v~~g~~e~~P-----~~~~~l~~l~~~G~ 192 (264)
T 2xwp_A 128 RQQ--MPS------LRQTEKVVFMGHGASHHAFAAYACLDHMMTAQ--RFPARVGAVESYP-----EVDILIDSLRDEGV 192 (264)
T ss_dssp HTT--SCC------CCTTEEEEEEECCCSSGGGHHHHHHHHHHHHT--TCSEEEEESSSSS-----CHHHHHHHHHHHTC
T ss_pred HHh--ccc------cCCCCeEEEEECCCCchhhHHHHHHHHHHHhh--CCCEEEEEeCCCC-----CHHHHHHHHHHCCC
Confidence 321 000 01112222333331 234555555666666 4233333333334 57788888899999
Q ss_pred CeEEEEeceeCCCCcc
Q 013195 377 PQVHISQFYPRPGTPA 392 (448)
Q Consensus 377 ~~v~i~~~~p~pGT~~ 392 (448)
..+.+.+|.-.+|.-+
T Consensus 193 ~~v~v~P~~l~aG~h~ 208 (264)
T 2xwp_A 193 TGVHLMPLMLVAGDHA 208 (264)
T ss_dssp CEEEEEECSSCCCHHH
T ss_pred CEEEEEeeecccCcch
Confidence 9999999999998643
No 122
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=26.62 E-value=3.7e+02 Score=24.59 Aligned_cols=62 Identities=24% Similarity=0.329 Sum_probs=42.4
Q ss_pred EEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCC
Q 013195 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (448)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~ 271 (448)
.++|..+-||++. -..+++.+++-++.+.+.|+..|.+.+ + .|.-.+....++++.+.+.++
T Consensus 137 ~~~l~~~~~~e~~-------------~~~~~~~~~~~~~~~~~~G~d~i~l~D--t--~G~~~P~~~~~lv~~l~~~~~ 198 (295)
T 1ydn_A 137 RGYVSCVVECPYD-------------GPVTPQAVASVTEQLFSLGCHEVSLGD--T--IGRGTPDTVAAMLDAVLAIAP 198 (295)
T ss_dssp EEEEECSSEETTT-------------EECCHHHHHHHHHHHHHHTCSEEEEEE--T--TSCCCHHHHHHHHHHHHTTSC
T ss_pred EEEEEEEecCCcC-------------CCCCHHHHHHHHHHHHhcCCCEEEecC--C--CCCcCHHHHHHHHHHHHHhCC
Confidence 3455555666653 134789999999999999999999975 2 233223456788888877653
No 123
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=26.59 E-value=39 Score=29.57 Aligned_cols=71 Identities=25% Similarity=0.416 Sum_probs=41.5
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCeee--cCC---CCCcEEEEeecccccc--hHHH--HHHHHHHHhcCCCCE
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DNS---EEADIWLINTCTVKSP--SQSA--MDTLIAKCKSAKKPL 128 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~--~~~---~~aDvv~intctv~~~--a~~~--~~~~i~~~~~~~~~v 128 (448)
+++|.|+-+|++ |. ..+...|++.|++++ .++ .++|.+++- ..-.+ +... ...+++.+++.+++|
T Consensus 2 ~~~I~iiD~g~~-n~---~si~~al~~~G~~~~v~~~~~~l~~~D~lilP--G~g~~~~~~~~~~~~~~i~~~~~~~~Pv 75 (211)
T 4gud_A 2 TQNVVIIDTGCA-NI---SSVKFAIERLGYAVTISRDPQVVLAADKLFLP--GVGTASEAMKNLTERDLIELVKRVEKPL 75 (211)
T ss_dssp -CCEEEECCCCT-TH---HHHHHHHHHTTCCEEEECCHHHHHHCSEEEEC--CCSCHHHHHHHHHHTTCHHHHHHCCSCE
T ss_pred CCEEEEEECCCC-hH---HHHHHHHHHCCCEEEEECCHHHHhCCCEEEEC--CCCCHHHHHHHHHhcChHHHHHHcCCCE
Confidence 357999999996 43 347788999998753 332 357989883 32121 1111 122355555666654
Q ss_pred EEEcccc
Q 013195 129 VVAGCVP 135 (448)
Q Consensus 129 VvgGc~a 135 (448)
+|=|..
T Consensus 76 -lGIClG 81 (211)
T 4gud_A 76 -LGICLG 81 (211)
T ss_dssp -EEETHH
T ss_pred -EEEchh
Confidence 444643
No 124
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=26.46 E-value=1.4e+02 Score=23.32 Aligned_cols=93 Identities=9% Similarity=0.042 Sum_probs=48.3
Q ss_pred ChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhcC--CCCEE-EEccccc
Q 013195 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLV-VAGCVPQ 136 (448)
Q Consensus 71 N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~--~~~vV-vgGc~a~ 136 (448)
+....+.+...|...||++... ....|+++++...-.... .++++++++. ..+|| +++....
T Consensus 13 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~l~~~~g----~~l~~~l~~~~~~~~ii~ls~~~~~ 88 (137)
T 3cfy_A 13 STSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSG----EDVLDWINQNDIPTSVIIATAHGSV 88 (137)
T ss_dssp CTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBCSSSBH----HHHHHHHHHTTCCCEEEEEESSCCH
T ss_pred CHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCH----HHHHHHHHhcCCCCCEEEEEecCcH
Confidence 4445667777777777765421 134799999643322122 3345555443 34444 5443221
Q ss_pred cch-hhhcCCc-cEEEcCCchhHHHHHHHHHhc
Q 013195 137 GSR-DLKELEG-VSIVGVQQIDRVVEVVEETLK 167 (448)
Q Consensus 137 ~~~-e~~~~~~-d~vvg~~~~~~i~~~l~~~~~ 167 (448)
... +.....+ +++.-+-....+...|.....
T Consensus 89 ~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 89 DLAVNLIQKGAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp HHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 111 1112333 466676676777777766543
No 125
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=26.40 E-value=2.2e+02 Score=21.94 Aligned_cols=95 Identities=13% Similarity=0.205 Sum_probs=52.4
Q ss_pred cChhHHHHHHHHHHhCCCeeecC-----------C-CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-EEccccc
Q 013195 70 HNQSDSEYMAGQLSAFGYALTDN-----------S-EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAGCVPQ 136 (448)
Q Consensus 70 ~N~~dse~~~~~L~~~G~~~~~~-----------~-~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vV-vgGc~a~ 136 (448)
-+....+.+...|.+.||++... . ...|+|+++...-.....-.+.+.+++. ++.+|| +++....
T Consensus 13 d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~--~~~~ii~ls~~~~~ 90 (140)
T 3h5i_A 13 DSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI--SELPVVFLTAHTEP 90 (140)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH--CCCCEEEEESSSSC
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhC--CCCCEEEEECCCCH
Confidence 46677788899999999987432 2 5689999965332212222233334432 455554 5554322
Q ss_pred cch-hhhcCCcc-EEEcCCchhHHHHHHHHHh
Q 013195 137 GSR-DLKELEGV-SIVGVQQIDRVVEVVEETL 166 (448)
Q Consensus 137 ~~~-e~~~~~~d-~vvg~~~~~~i~~~l~~~~ 166 (448)
... +.....++ ++.-+-....+...|....
T Consensus 91 ~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 122 (140)
T 3h5i_A 91 AVVEKIRSVTAYGYVMKSATEQVLITIVEMAL 122 (140)
T ss_dssp CCCGGGGGSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 221 12233344 5666666677777776544
No 126
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=26.22 E-value=73 Score=27.14 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=24.7
Q ss_pred CCceEEEEecCCccCh--------hH--HHHHHHHHHhCCCeee
Q 013195 57 GTETIYMKTFGCSHNQ--------SD--SEYMAGQLSAFGYALT 90 (448)
Q Consensus 57 ~~~~~~~~t~GC~~N~--------~d--se~~~~~L~~~G~~~~ 90 (448)
...+++|+|-|=.... .| +.++++.|++.|++++
T Consensus 14 ~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~ 57 (178)
T 3iwt_A 14 KSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKII 57 (178)
T ss_dssp CCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEE
Confidence 3468999998853221 24 4689999999998864
No 127
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=26.15 E-value=2.2e+02 Score=25.30 Aligned_cols=101 Identities=20% Similarity=0.275 Sum_probs=57.6
Q ss_pred HHHHHHHHHCCCcEEEEEecCCC--CCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhC-CC
Q 013195 227 VGRVRTVIADGVKEVWLSSEDTG--AYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-PC 303 (448)
Q Consensus 227 v~ei~~l~~~G~~ei~~~~~~~~--~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~-~~ 303 (448)
++||+.+.+.|. +-|..+| ...+..+.++.+.+++|.+.++ + ++.+..+ ..+....+++-..+.+. ++
T Consensus 10 ~~ei~~~~~~g~----i~GVTTNPsli~k~~g~~~~~~~~eI~~~v~--G--~Vs~EV~-a~d~e~mi~ea~~l~~~~~n 80 (212)
T 3r8r_A 10 IDEIREANELGI----LAGVTTNPSLVAKEANVSFHDRLREITDVVK--G--SVSAEVI-SLKAEEMIEEGKELAKIAPN 80 (212)
T ss_dssp HHHHHHHHHTTC----EEEEECCHHHHHTSCSSCHHHHHHHHHHHCC--S--CEEEECC-CSSHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHhcCC----cccccCCHHHHHHccCCCHHHHHHHHHHhcC--C--CEEEEEe-cCCHHHHHHHHHHHHHhCCC
Confidence 578888888874 3332222 1222213468899999998875 3 5555432 22333333333333321 11
Q ss_pred cccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeC
Q 013195 304 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356 (448)
Q Consensus 304 ~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~ 356 (448)
+ .+.+| .|. +=.++++.+.+. ||.+..++|+.+
T Consensus 81 v--~IKIP---------------~T~-eGl~A~~~L~~~--GI~vn~TlifS~ 113 (212)
T 3r8r_A 81 I--TVKIP---------------MTS-DGLKAVRALTDL--GIKTNVTLIFNA 113 (212)
T ss_dssp E--EEEEE---------------SSH-HHHHHHHHHHHT--TCCEEEEEECSH
T ss_pred E--EEEeC---------------CCH-HHHHHHHHHHHC--CCcEEEEEeCCH
Confidence 1 22222 343 446788888888 999999999876
No 128
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=25.89 E-value=3.4e+02 Score=23.81 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=32.9
Q ss_pred ccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCC
Q 013195 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (448)
Q Consensus 218 ~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~ 271 (448)
.|..++++.++-++.+.+.|++-|.+..-+ ..-.+.++++.+.++
T Consensus 22 ~r~~~~~~~~~~~~al~~gGv~~iel~~k~---------~~~~~~i~~l~~~~~ 66 (214)
T 1wbh_A 22 IVVKKLEHAVPMAKALVAGGVRVLNVTLRT---------ECAVDAIRAIAKEVP 66 (214)
T ss_dssp ECCSSGGGHHHHHHHHHHTTCCEEEEESCS---------TTHHHHHHHHHHHCT
T ss_pred EECCCHHHHHHHHHHHHHcCCCEEEEeCCC---------hhHHHHHHHHHHHCc
Confidence 355677888888999999999988886321 123678888887764
No 129
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=25.51 E-value=80 Score=26.52 Aligned_cols=71 Identities=11% Similarity=0.119 Sum_probs=45.7
Q ss_pred ceEEEEecCCc-cChhH-------HHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE
Q 013195 59 ETIYMKTFGCS-HNQSD-------SEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV 129 (448)
Q Consensus 59 ~~~~~~t~GC~-~N~~d-------se~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vV 129 (448)
-+|||-|-|+. +|.+= .+++...|...|-+++++.+.-=-+||++=++........-.++.++++.|.||-
T Consensus 25 s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR~~~~~~~yp~~DIL~rAr~~~mKIW 103 (151)
T 3oq0_A 25 SRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVW 103 (151)
T ss_dssp CEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEE
T ss_pred CEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeee
Confidence 47999999985 44332 2566677789999999987654456666655544322122335667777777765
No 130
>1oao_C CODH, carbon monoxide dehydrogenase/acetyl-COA synthase alpha; oxidoreductase-transferase complex, electron transfer, oxidoreductase; 1.90A {Moorella thermoacetica} SCOP: e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A 3git_A 3s2x_A
Probab=24.86 E-value=40 Score=35.39 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=35.5
Q ss_pred HHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEcccccc
Q 013195 82 LSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137 (448)
Q Consensus 82 L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~ 137 (448)
+++.|..+|+-.-.. +++|=.|+= ..+.+..+++.+.++|.-|++.||.+..
T Consensus 141 iR~~GvplV~G~IPG-vavIvG~a~---d~e~aa~I~~e~q~r~~lvfl~G~~a~q 192 (729)
T 1oao_C 141 VRRFGIKMVDWTIPG-EAIILGRAK---DSKALAKIVKELMGMGFMLFICDEAVEQ 192 (729)
T ss_dssp HHHTHHHHTTTSSCC-EEEEEECCS---CHHHHHHHHHHHHHTTCEEEEETHHHHH
T ss_pred HHhcCCceecCCCCe-EEEEEeCCC---CHHHHHHHHHHHHHCCcEEEEechHHHH
Confidence 566666666644444 444447764 2456788899998889888899998843
No 131
>1ezw_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin reductase; (beta, alpha)8 barrel, TIM barrel, oxidoreductase; 1.65A {Methanopyrus kandleri} SCOP: c.1.16.3
Probab=24.70 E-value=3.5e+02 Score=25.38 Aligned_cols=105 Identities=10% Similarity=0.243 Sum_probs=63.9
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeec-------CCcChhHHHH
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-------NPPFILEHLK 293 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~-------~p~~i~~~l~ 293 (448)
.+++++++.++..-+.|+..+|+.+ ..+.. +-.-++-.+.... .++++++. +|-.+.+...
T Consensus 14 ~~~~~~~~~a~~AE~~Gfd~~w~~e-h~~~~------dp~~~la~lAa~T-----~rI~lgt~v~~~~~~~P~~~A~~~a 81 (349)
T 1ezw_A 14 DKPTKIAHLIKVAEDNGFEYAWICD-HYNNY------SYMGVLTLAAVIT-----SKIKLGPGITNPYTRHPLITASNIA 81 (349)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEECC-CTTSC------CHHHHHHHHHHTC-----SSSEEEESSBCSSSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecc-ccCCC------CHHHHHHHHHHhC-----CcceEEeeeecCCCCCHHHHHHHHH
Confidence 4678888888888889999999865 33221 2356677777654 35566542 2222222222
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhcCCCC----------------CHHHHHHHHHHHHHh
Q 013195 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY----------------TLSDFRTVVDTLIEL 342 (448)
Q Consensus 294 el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~----------------t~e~~~~~i~~ir~~ 342 (448)
.| +.+..+ ++.+|+=+|.+.....++..+ ..+.+.+.++.+++.
T Consensus 82 tL-d~ls~G----R~~lGvg~G~~~~~~~~G~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~l~~l 141 (349)
T 1ezw_A 82 TL-DWISGG----RAIIGMGPGDKATFDKMGLPFPCKIPIWNPEAEDEVGPATAIREVKEVIYQY 141 (349)
T ss_dssp HH-HHHTTS----CBCEEECCCCHHHHHHHTCCSSCCCCTBCTTCCSCCCHHHHHHHHHHHHHHH
T ss_pred HH-HHHcCC----CEEEEecCCCHHHHHHhCCCcccccccccccccccccHHHHHHHHHHHHHHH
Confidence 22 222222 567788888877777877653 346677777777765
No 132
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=24.49 E-value=1e+02 Score=26.74 Aligned_cols=72 Identities=10% Similarity=0.023 Sum_probs=45.3
Q ss_pred EEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccccc
Q 013195 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGS 138 (448)
Q Consensus 63 ~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~ 138 (448)
++.++...+...++.+...|..... +++.++=++.|||-.=.-.+...+++.++.++. ...++++|..++..
T Consensus 28 ii~l~g~I~~~~a~~i~~~L~~l~~---~~~~~~I~l~InSPGG~v~a~~~I~~~i~~~~~-pV~~~v~g~AaS~g 99 (193)
T 1yg6_A 28 VIFLTGQVEDHMANLIVAQMLFLEA---ENPEKDIYLYINSPGGVITAGMSIYDTMQFIKP-DVSTICMGQAASMG 99 (193)
T ss_dssp EEEEESSBCHHHHHHHHHHHHHHHH---HCSSSCEEEEEEECCBCHHHHHHHHHHHHHSSS-CEEEEEEEEEETHH
T ss_pred EEEEcCEEcHHHHHHHHHHHHHHHh---cCCCCCEEEEEECcCCCHHHHHHHHHHHHhcCC-CEEEEEeeeHHHHH
Confidence 4556889999999999998874321 122344467889987443444566776766542 23455777666543
No 133
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=24.45 E-value=5e+02 Score=25.26 Aligned_cols=116 Identities=17% Similarity=0.190 Sum_probs=55.1
Q ss_pred HHHHHHHHHCCCc--EEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCc
Q 013195 227 VGRVRTVIADGVK--EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (448)
Q Consensus 227 v~ei~~l~~~G~~--ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~ 304 (448)
..|+..+.+.|+. .|.|.+. +.. .+-++...+. +...+.+.+ .++++.+.++....
T Consensus 92 ~~E~~~~~~~G~~~~~Ii~~g~-----~k~-----~~ei~~a~~~----gv~~~~vds------~~el~~l~~~~~~~-- 149 (424)
T 7odc_A 92 KTEIQLVQGLGVPAERVIYANP-----CKQ-----VSQIKYAASN----GVQMMTFDS------EIELMKVARAHPKA-- 149 (424)
T ss_dssp HHHHHHHHHTTCCGGGEEECCS-----SCC-----HHHHHHHHHT----TCCEEEECS------HHHHHHHHHHCTTC--
T ss_pred HHHHHHHHHcCCChhhEEECCC-----CCC-----HHHHHHHHHC----CCCEEEeCC------HHHHHHHHHhCCCC--
Confidence 4778888888875 5766552 111 2333333332 232333331 12333444443222
Q ss_pred ccccccccCCCCH-HHHHhcCC-CCCHHHHHHHHHHHHHhCCCCEEEE-EEEEeCCCCCHHHHHHHH
Q 013195 305 YSFLHVPVQSGSD-AVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIAT-DIICGFPGETDEDFNQTV 368 (448)
Q Consensus 305 ~~~l~iglES~s~-~vLk~m~R-~~t~e~~~~~i~~ir~~~pgi~i~~-~~IvG~PgET~ed~~~tl 368 (448)
.+++-+.++.. ..-..|+| |.+.++..++++.+++. ++.+.. .+=+|---.+.+.+.+.+
T Consensus 150 --~v~lRvn~~~~~~~~~~~skfG~~~~~~~~~~~~~~~~--~l~l~Glh~H~gsq~~d~~~~~~a~ 212 (424)
T 7odc_A 150 --KLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAKEL--NIDVIGVSFHVGSGCTDPDTFVQAV 212 (424)
T ss_dssp --EEEEEBCC-----------CCCBCHHHHHHHHHHHHHT--TCEEEEEECCCCSSCCCTHHHHHHH
T ss_pred --eEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhC--CCCEEEEEEECCCCCCCHHHHHHHH
Confidence 33444444321 12234666 67899999999999886 775432 333443223445554444
No 134
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=24.39 E-value=2e+02 Score=27.42 Aligned_cols=114 Identities=11% Similarity=0.118 Sum_probs=57.4
Q ss_pred HHHHHHHHHCCCc--EEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHhCCCc
Q 013195 227 VGRVRTVIADGVK--EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (448)
Q Consensus 227 v~ei~~l~~~G~~--ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~~ 304 (448)
+.|+..+.+.|+. .|.+.+.. .+ .+-++.+.+. +...+.+. + .++++.+.+......+
T Consensus 71 ~~E~~~~~~~G~~~~~I~~~~~~-----k~-----~~~l~~a~~~----~v~~~~vd--s----~~~l~~l~~~~~~~~v 130 (372)
T 2nva_A 71 SSEIKKVIQIGVSPSRIIFAHTM-----KT-----IDDLIFAKDQ----GVDIATFD--S----SFELDKIHTYHPNCKM 130 (372)
T ss_dssp HHHHHHHHHHTCCGGGEEECCSC-----CC-----HHHHHHHHHH----TCCEEEEC--S----HHHHHHHHHHCTTCEE
T ss_pred HHHHHHHHHcCCCHHHEEECCCC-----CC-----HHHHHHHHHC----CCCEEEeC--C----HHHHHHHHHhCCCCeE
Confidence 5788888888884 57765521 11 2334444432 22223332 1 1233334443333233
Q ss_pred ccccccccCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCEEE-EEEEEeCCCCCHHHHH
Q 013195 305 YSFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIA-TDIICGFPGETDEDFN 365 (448)
Q Consensus 305 ~~~l~iglES~s~~vLk~m~R-~~t~e~~~~~i~~ir~~~pgi~i~-~~~IvG~PgET~ed~~ 365 (448)
.-+++.|.++. ....++| |.+.+++.+.++.+++. ++.+. ..+-+|--..+.+.+.
T Consensus 131 ~lrv~~~~~~~---~~~~~~R~G~~~~~~~~~~~~~~~~--~l~~~Gl~~H~gs~~~~~~~~~ 188 (372)
T 2nva_A 131 ILRIRCDDPNA---TVQLGNKFGANEDEIRHLLEYAKQL--DIEVIGISFHVGSGSRNPEAYY 188 (372)
T ss_dssp EEEBCCCCTTC---SBCCTTTSSBCGGGHHHHHHHHHHT--TCCEEEEECCCCBSBCCHHHHH
T ss_pred EEEEecCCCCC---cccCCCCCCCCHHHHHHHHHHHHHc--CCeEEEEEEEcCCCCCCHHHHH
Confidence 34555554321 1122355 56788888999988886 76543 3334454334444433
No 135
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=24.00 E-value=2.5e+02 Score=21.63 Aligned_cols=93 Identities=14% Similarity=0.121 Sum_probs=51.9
Q ss_pred ChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhc----CCCCEE-EEccc
Q 013195 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS----AKKPLV-VAGCV 134 (448)
Q Consensus 71 N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~----~~~~vV-vgGc~ 134 (448)
+....+.+...|++.||++... ....|+|++....-... -.++++++++ ++.+|| ++|..
T Consensus 13 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~----g~~~~~~lr~~~~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 13 DDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVLLPGID----GYTLCKRVRQHPLTKTLPILMLTAQG 88 (136)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSC----HHHHHHHHHHSGGGTTCCEEEEECTT
T ss_pred CHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCC----HHHHHHHHHcCCCcCCccEEEEecCC
Confidence 4556677888888889887532 24579999965332212 2334444443 234554 55532
Q ss_pred cccchhhh--cCCc-cEEEcCCchhHHHHHHHHHhcC
Q 013195 135 PQGSRDLK--ELEG-VSIVGVQQIDRVVEVVEETLKG 168 (448)
Q Consensus 135 a~~~~e~~--~~~~-d~vvg~~~~~~i~~~l~~~~~g 168 (448)
....... ...+ +++.-+-....+...+.....+
T Consensus 89 -~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 89 -DISAKIAGFEAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp -CHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 2111111 2233 4677777777787777766544
No 136
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=23.88 E-value=2.4e+02 Score=22.14 Aligned_cols=103 Identities=13% Similarity=0.109 Sum_probs=58.8
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhCCCe-e---ecC---------CCCCcEEEEeecccccchHHHHHHHHHHHhcC
Q 013195 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYA-L---TDN---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (448)
Q Consensus 58 ~~~~~~~t~GC~~N~~dse~~~~~L~~~G~~-~---~~~---------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~ 124 (448)
..+|.|+. -+....+.+...|.+.|+. + +.+ ....|+|+++...-... ..++++++++.
T Consensus 15 ~~~iLivd----d~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~----g~~~~~~l~~~ 86 (152)
T 3eul_A 15 KVRVVVGD----DHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMD----GAQVAAAVRSY 86 (152)
T ss_dssp CEEEEEEC----SSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSC----HHHHHHHHHHT
T ss_pred eEEEEEEc----CCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCC----HHHHHHHHHhc
Confidence 45666543 4677778889999998843 2 222 23579999965432212 23445555544
Q ss_pred --CCCEE-EEccccccch--hhhcCCcc-EEEcCCchhHHHHHHHHHhcCC
Q 013195 125 --KKPLV-VAGCVPQGSR--DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (448)
Q Consensus 125 --~~~vV-vgGc~a~~~~--e~~~~~~d-~vvg~~~~~~i~~~l~~~~~g~ 169 (448)
+.+|| +++. ..... +.....++ ++.-+-....+.+.|.....+.
T Consensus 87 ~~~~~ii~~s~~-~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 136 (152)
T 3eul_A 87 ELPTRVLLISAH-DEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGR 136 (152)
T ss_dssp TCSCEEEEEESC-CCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC
T ss_pred CCCCeEEEEEcc-CCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 34555 4443 22111 11233444 5667767778888888777664
No 137
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=23.83 E-value=1.8e+02 Score=27.67 Aligned_cols=75 Identities=11% Similarity=0.042 Sum_probs=48.8
Q ss_pred cEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCC-----CCC--CC-CCHHHHH
Q 013195 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-----GRD--IG-VNLPILL 263 (448)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~y-----g~d--~~-~~l~~ll 263 (448)
++.+|.+..|=.-. -.++..-| ...++++.++++++.+.+.|++.|.|.+.- ... |.. .. .-+...+
T Consensus 38 LI~PlFV~eg~~~~---~~I~SMPG-v~r~sid~l~~~~~~~~~lGi~~v~LFgv~-~~~~KD~~gs~A~~~~g~v~rai 112 (337)
T 1w5q_A 38 LILPVFVLDGVNQR---ESIPSMPG-VERLSIDQLLIEAEEWVALGIPALALFPVT-PVEKKSLDAAEAYNPEGIAQRAT 112 (337)
T ss_dssp EEEEEEEESSSSCE---EECTTSTT-CEEEEHHHHHHHHHHHHHTTCCEEEEEECC-CGGGCBSSCGGGGCTTSHHHHHH
T ss_pred ceeeEEEecCCCCc---cccCCCCC-ceeeCHHHHHHHHHHHHHCCCCEEEEecCC-CcccCCcccCccCCCCChHHHHH
Confidence 44556666664432 23444444 445689999999999999999999999851 111 111 01 2356788
Q ss_pred HHHHHhCC
Q 013195 264 NAIVAELP 271 (448)
Q Consensus 264 ~~l~~~~~ 271 (448)
+.|++.++
T Consensus 113 r~iK~~~p 120 (337)
T 1w5q_A 113 RALRERFP 120 (337)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHCC
Confidence 99988876
No 138
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=23.76 E-value=2.9e+02 Score=26.18 Aligned_cols=52 Identities=13% Similarity=0.085 Sum_probs=32.3
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEe
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~ 281 (448)
.+++++.++++.+.+.|++.+-+=- |.+. ..-.+.++++.+.++ ....+++.
T Consensus 138 ~~~~~~~~~a~~~~~~G~~~~K~K~------g~~~-~~d~~~v~avR~a~g--~~~~l~vD 189 (354)
T 3jva_A 138 DEPNVMAQKAVEKVKLGFDTLKIKV------GTGI-EADIARVKAIREAVG--FDIKLRLD 189 (354)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEC------CSCH-HHHHHHHHHHHHHHC--TTSEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEe------CCCH-HHHHHHHHHHHHHcC--CCCeEEEE
Confidence 3688888999888888988887631 1110 112456666666554 34556665
No 139
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=23.60 E-value=2.4e+02 Score=21.38 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=52.6
Q ss_pred cChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhcC--CCCE-EEEcccc
Q 013195 70 HNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPL-VVAGCVP 135 (448)
Q Consensus 70 ~N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~--~~~v-VvgGc~a 135 (448)
-+....+.+...|...||.+... ....|+++++...-... ..++++++++. ..+| ++++...
T Consensus 11 d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~----g~~~~~~l~~~~~~~~ii~~s~~~~ 86 (136)
T 1mvo_A 11 DEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD----GIEVCKQLRQQKLMFPILMLTAKDE 86 (136)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSC----HHHHHHHHHHTTCCCCEEEEECTTC
T ss_pred CCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecCCCCCC----HHHHHHHHHcCCCCCCEEEEECCCC
Confidence 35566677888888889876432 12479999964322212 23445555443 3454 4555432
Q ss_pred ccchh-hhcCCc-cEEEcCCchhHHHHHHHHHhcC
Q 013195 136 QGSRD-LKELEG-VSIVGVQQIDRVVEVVEETLKG 168 (448)
Q Consensus 136 ~~~~e-~~~~~~-d~vvg~~~~~~i~~~l~~~~~g 168 (448)
..... .....+ +++.-+-....+...+.....+
T Consensus 87 ~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 87 EFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp CCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 22211 123333 4666766777777777766544
No 140
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=23.59 E-value=4e+02 Score=25.42 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=51.4
Q ss_pred ccCHHHHHHHHHHHHHC-CCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHH
Q 013195 220 SYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (448)
Q Consensus 220 sr~~e~Iv~ei~~l~~~-G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (448)
..++++++++++.+.+. |++.+-+= ++.... ..-.+.++++.+.++ ....+++. .|-..-.+...++.+.
T Consensus 149 ~~~~~~~~~~a~~~~~~~G~~~~K~K---vg~~~~---~~d~~~v~avR~~~g--~~~~l~vD-an~~~~~~~a~~~~~~ 219 (372)
T 3tj4_A 149 SFTLEDLLAGSARAVEEDGFTRLKIK---VGHDDP---NIDIARLTAVRERVD--SAVRIAID-GNGKWDLPTCQRFCAA 219 (372)
T ss_dssp TSCHHHHHHHHHHHHHTTCCCEEEEE---CCCSSH---HHHHHHHHHHHHHSC--TTCEEEEE-CTTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCCCEEEEc---CCCCCH---HHHHHHHHHHHHHcC--CCCcEEee-CCCCCCHHHHHHHHHH
Confidence 45799999999999998 99988773 211100 112567778877775 45567776 3332222222233344
Q ss_pred HhCCCcccccccccCCCCHHHHHh
Q 013195 299 LRHPCVYSFLHVPVQSGSDAVLSA 322 (448)
Q Consensus 299 ~~~~~~~~~l~iglES~s~~vLk~ 322 (448)
+...+ ..++.=|+...+-+-++.
T Consensus 220 l~~~~-i~~iEqP~~~~d~~~~~~ 242 (372)
T 3tj4_A 220 AKDLD-IYWFEEPLWYDDVTSHAR 242 (372)
T ss_dssp TTTSC-EEEEESCSCTTCHHHHHH
T ss_pred HhhcC-CCEEECCCCchhHHHHHH
Confidence 43333 345555554444444433
No 141
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=23.56 E-value=1.3e+02 Score=24.28 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=33.4
Q ss_pred HHHHHHHHhCCCeee---------cCCC-CCcEEEEeeccccc---chHHHHHHHHHHHhc---CCCCEEEEcc
Q 013195 76 EYMAGQLSAFGYALT---------DNSE-EADIWLINTCTVKS---PSQSAMDTLIAKCKS---AKKPLVVAGC 133 (448)
Q Consensus 76 e~~~~~L~~~G~~~~---------~~~~-~aDvv~intctv~~---~a~~~~~~~i~~~~~---~~~~vVvgGc 133 (448)
+.++..|.+.|+++. .+.. ++|.++|-|.|.-. ..-..+...++++.. .++++.+=|+
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~~l~~k~~~vfg~ 93 (148)
T 3f6r_A 20 QKLEELIAAGGHEVTLLNAADASAENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIGLAGRKVAAFAS 93 (148)
T ss_dssp HHHHHHHHTTTCEEEEEETTTBCCTTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGGTCCTTCEEEEEEE
T ss_pred HHHHHHHHhCCCeEEEEehhhCCHhHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhccCCCCCEEEEEEe
Confidence 345566667787542 1234 78999997766542 222345566666543 3556666566
No 142
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=23.51 E-value=2.7e+02 Score=21.80 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=60.9
Q ss_pred CCceEEEEecCCccChhHHHHHHHHHHhCC--Ceee--cC---------CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 013195 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFG--YALT--DN---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (448)
Q Consensus 57 ~~~~~~~~t~GC~~N~~dse~~~~~L~~~G--~~~~--~~---------~~~aDvv~intctv~~~a~~~~~~~i~~~~~ 123 (448)
.|++|.|+. -+..-.+.+...|...| |.+. .+ ....|+|+++...-... ...+++++++
T Consensus 19 ~m~~iLivd----d~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~----g~~~~~~l~~ 90 (150)
T 4e7p_A 19 SHMKVLVAE----DQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKT----GLEVLEWIRS 90 (150)
T ss_dssp -CEEEEEEC----SCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSSC----HHHHHHHHHH
T ss_pred CccEEEEEc----CCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCCc----HHHHHHHHHH
Confidence 366777754 46777788899999887 5542 22 35689999965432222 2344555554
Q ss_pred C--CCCEE-EEccccccch-hhhcCCcc-EEEcCCchhHHHHHHHHHhcCC
Q 013195 124 A--KKPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (448)
Q Consensus 124 ~--~~~vV-vgGc~a~~~~-e~~~~~~d-~vvg~~~~~~i~~~l~~~~~g~ 169 (448)
. +.+|| +++....... +.....++ ++.-+-....+.+.|.....+.
T Consensus 91 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 91 EKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp TTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTC
T ss_pred hCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCC
Confidence 3 34544 5543221111 11233444 5666767788888888877664
No 143
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=23.25 E-value=2e+02 Score=27.17 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=38.6
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCC------CCCCHHHHHHHHHHhCCCCCcceEEEeecCCc
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD------IGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d------~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~ 286 (448)
++.+++.+++.++.+.+.|..-|-+-++.+.. |.. .-.++..++++|.+.. ...+.+.+.+|.
T Consensus 28 ~~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrP-Ga~~v~~~eE~~Rv~pvI~~l~~~~----~vpiSIDT~~~~ 96 (314)
T 2vef_A 28 QFFALEQALQQARKLIAEGASMLDIGGESTRP-GSSYVEIEEEIQRVVPVIKAIRKES----DVLISIDTWKSQ 96 (314)
T ss_dssp --CHHHHHHHHHHHHHHTTCSEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHC----CCEEEEECSCHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-CCCCCCHHHHHHHHHHHHHHHHhhC----CceEEEeCCCHH
Confidence 44578999999999999999988887654322 221 0124555666666542 356777765553
No 144
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=23.17 E-value=1.2e+02 Score=23.46 Aligned_cols=102 Identities=13% Similarity=0.075 Sum_probs=56.1
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhcC--C
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--K 125 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~--~ 125 (448)
.+|.++. -+....+.+...|.+.||.+... ....|+|+++...-... ..++++++++. +
T Consensus 8 ~~ilivd----d~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~----g~~~~~~l~~~~~~ 79 (137)
T 3hdg_A 8 LKILIVE----DDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLG----GLEMLDRIKAGGAK 79 (137)
T ss_dssp CCEEEEC----SCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSC----HHHHHHHHHHTTCC
T ss_pred cEEEEEe----CCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCC----HHHHHHHHHhcCCC
Confidence 3555543 46677788888898888866332 23579999965332222 23445555544 3
Q ss_pred CCEEEEccccccchhh--hcCCcc-EEEcCCchhHHHHHHHHHhcC
Q 013195 126 KPLVVAGCVPQGSRDL--KELEGV-SIVGVQQIDRVVEVVEETLKG 168 (448)
Q Consensus 126 ~~vVvgGc~a~~~~e~--~~~~~d-~vvg~~~~~~i~~~l~~~~~g 168 (448)
.+||+-.-........ ....++ ++.-+-....+.+.|+....+
T Consensus 80 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 80 PYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp CEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred CcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 4555433332211111 123344 455566667788777766544
No 145
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=23.11 E-value=14 Score=25.93 Aligned_cols=17 Identities=41% Similarity=0.952 Sum_probs=14.4
Q ss_pred EeCCCCCCCccceeeCc
Q 013195 197 PINVGCLGACTYCKTKH 213 (448)
Q Consensus 197 ~isrGC~~~CsFC~~~~ 213 (448)
+..+||-+.|.||....
T Consensus 19 KFADG~Gh~C~yCk~r~ 35 (62)
T 2a20_A 19 KFADGCGHNCSYCQTKF 35 (62)
T ss_dssp CCCSSCCEEBTTTCCEE
T ss_pred eeccCCCccccccCCee
Confidence 46899999999998753
No 146
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Probab=23.05 E-value=2.2e+02 Score=27.33 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=50.3
Q ss_pred CcEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCCCC----CCC--CCC-CHHHHH
Q 013195 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY----GRD--IGV-NLPILL 263 (448)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~y----g~d--~~~-~l~~ll 263 (448)
.++.+|.+..| ... -.++..-|-+| ++++.++++++.+.+.|++.|.|.+.-.... |.. ... -+...+
T Consensus 45 dLI~PlFV~eg-~~~---~~I~SMPGv~r-~sid~l~~~~~~~~~lGi~av~LFgv~~p~~KD~~gs~A~~~~g~v~rAi 119 (356)
T 3obk_A 45 SLIYPLFVHDE-ETS---VPIPSMPGQSR-LSMEDLLKEVGEARSYGIKAFMLFPKVDDELKSVMAEESYNPDGLLPRAI 119 (356)
T ss_dssp GEEEEEEEESS-SSC---EECTTSTTCEE-ECHHHHHHHHHHHHHTTCCEEEEEEECCGGGCBSSCGGGGCTTSHHHHHH
T ss_pred HceeeEEEecC-CCC---cccCCCCCceE-ECHHHHHHHHHHHHHCCCCEEEEecCCCcccCCcccccccCCCChHHHHH
Confidence 35556777777 221 35666656454 5999999999999999999999988411111 111 011 255788
Q ss_pred HHHHHhCC
Q 013195 264 NAIVAELP 271 (448)
Q Consensus 264 ~~l~~~~~ 271 (448)
+.|++.++
T Consensus 120 r~iK~~~P 127 (356)
T 3obk_A 120 MALKEAFP 127 (356)
T ss_dssp HHHHHHST
T ss_pred HHHHHHCC
Confidence 88888876
No 147
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=22.99 E-value=2.6e+02 Score=21.54 Aligned_cols=93 Identities=10% Similarity=0.100 Sum_probs=53.0
Q ss_pred cChhHHHHHHHHHHhCCCe--eec--C---------CCCCcEEEEeecccccchHHHHHHHHHHHhc----CCCCEE-EE
Q 013195 70 HNQSDSEYMAGQLSAFGYA--LTD--N---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS----AKKPLV-VA 131 (448)
Q Consensus 70 ~N~~dse~~~~~L~~~G~~--~~~--~---------~~~aDvv~intctv~~~a~~~~~~~i~~~~~----~~~~vV-vg 131 (448)
-+....+.+...|+..||. +.. + ....|+|+++...- .. ...++++++++ .+.+|| ++
T Consensus 13 d~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~-~~---~g~~~~~~lr~~~~~~~~pii~~s 88 (144)
T 3kht_A 13 DNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLP-IA---NGFEVMSAVRKPGANQHTPIVILT 88 (144)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCG-GG---CHHHHHHHHHSSSTTTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCC-CC---CHHHHHHHHHhcccccCCCEEEEe
Confidence 4667788899999999987 321 1 35689999965322 11 23455666665 234554 55
Q ss_pred ccccccch-hhhcCCcc-EEEcCC-chhHHHHHHHHHh
Q 013195 132 GCVPQGSR-DLKELEGV-SIVGVQ-QIDRVVEVVEETL 166 (448)
Q Consensus 132 Gc~a~~~~-e~~~~~~d-~vvg~~-~~~~i~~~l~~~~ 166 (448)
+....... +.....++ ++.-+- ....+.+.|....
T Consensus 89 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l 126 (144)
T 3kht_A 89 DNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIF 126 (144)
T ss_dssp TTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH
Confidence 53221111 11233344 566666 6677777776554
No 148
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=22.96 E-value=2.4e+02 Score=21.08 Aligned_cols=92 Identities=10% Similarity=0.104 Sum_probs=50.7
Q ss_pred ChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhcC-CCCE-EEEcccccc
Q 013195 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA-KKPL-VVAGCVPQG 137 (448)
Q Consensus 71 N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~-~~~v-VvgGc~a~~ 137 (448)
+....+.+...|+..||++... ....|++++....- .. ...++++++++. +.+| +++|.....
T Consensus 11 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~~p-~~---~g~~~~~~lr~~~~~~ii~~t~~~~~~ 86 (120)
T 3f6p_A 11 EKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLP-NK---DGVEVCREVRKKYDMPIIMLTAKDSEI 86 (120)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETTST-TT---HHHHHHHHHHTTCCSCEEEEEESSCHH
T ss_pred CHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCCCC-CC---CHHHHHHHHHhcCCCCEEEEECCCChH
Confidence 4556677888888889886432 34679999954321 11 234555655543 3444 455533221
Q ss_pred chh-hhcCCc-cEEEcCCchhHHHHHHHHHh
Q 013195 138 SRD-LKELEG-VSIVGVQQIDRVVEVVEETL 166 (448)
Q Consensus 138 ~~e-~~~~~~-d~vvg~~~~~~i~~~l~~~~ 166 (448)
... .....+ +++.-+-....+...+....
T Consensus 87 ~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l 117 (120)
T 3f6p_A 87 DKVIGLEIGADDYVTKPFSTRELLARVKANL 117 (120)
T ss_dssp HHHHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 111 113333 46666666667776666543
No 149
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=22.93 E-value=1.8e+02 Score=27.54 Aligned_cols=76 Identities=12% Similarity=0.130 Sum_probs=47.6
Q ss_pred cEEEEEeCCCCCCCccceeeCccCCCccccCHHHHHHHHHHHHHCCCcEEEEEecCCC----CCCCC---CCCCHHHHHH
Q 013195 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTG----AYGRD---IGVNLPILLN 264 (448)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~----~yg~d---~~~~l~~ll~ 264 (448)
++.+|.+..|=.-. -.++..-| ...++++.++++++.+.+.|++.|.|.+.... ..|.. ...-+...++
T Consensus 31 LI~PlFV~eg~~~~---~~I~SMPG-v~r~sid~l~~~~~~~~~~Gi~~v~LFgvp~~~~Kd~~gs~A~~~~g~v~~air 106 (330)
T 1pv8_A 31 LIYPIFVTDVPDDI---QPITSLPG-VARYGVKRLEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEAIH 106 (330)
T ss_dssp EEEEEEECSCTTCE---EECSSSTT-CEEECHHHHHHHHHHHHHHTCCEEEEEECC--------------CCSHHHHHHH
T ss_pred ceeeEEEecCCCCc---cccCCCCC-ceeecHHHHHHHHHHHHHCCCCEEEEecCCcccCCCccccccCCCCChHHHHHH
Confidence 44455566664432 13444444 44569999999999999999999999885221 01111 0123567888
Q ss_pred HHHHhCC
Q 013195 265 AIVAELP 271 (448)
Q Consensus 265 ~l~~~~~ 271 (448)
.|++.++
T Consensus 107 ~iK~~~p 113 (330)
T 1pv8_A 107 LLRKTFP 113 (330)
T ss_dssp HHHHHST
T ss_pred HHHHHCC
Confidence 8888876
No 150
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=22.91 E-value=2.8e+02 Score=21.75 Aligned_cols=96 Identities=11% Similarity=0.080 Sum_probs=53.3
Q ss_pred cChhHHHHHHHHHHh-CCCeeec---C---------CCCCcEEEEeecccccchHHHHHHHHHHHhc--CCCCEE-EEcc
Q 013195 70 HNQSDSEYMAGQLSA-FGYALTD---N---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPLV-VAGC 133 (448)
Q Consensus 70 ~N~~dse~~~~~L~~-~G~~~~~---~---------~~~aDvv~intctv~~~a~~~~~~~i~~~~~--~~~~vV-vgGc 133 (448)
-+....+.+...|.+ .||.++. + ....|+|+++...-... ..++++++++ ++.+|| +++.
T Consensus 13 d~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~----g~~~~~~l~~~~~~~~ii~ls~~ 88 (153)
T 3cz5_A 13 DHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPG----GIEATRHIRQWDGAARILIFTMH 88 (153)
T ss_dssp SCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSC----HHHHHHHHHHHCTTCCEEEEESC
T ss_pred CcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCC----HHHHHHHHHHhCCCCeEEEEECC
Confidence 356667788888887 7887651 1 34579999965332212 2334444443 344555 4443
Q ss_pred ccccch-hhhcCCcc-EEEcCCchhHHHHHHHHHhcCC
Q 013195 134 VPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (448)
Q Consensus 134 ~a~~~~-e~~~~~~d-~vvg~~~~~~i~~~l~~~~~g~ 169 (448)
...... ......++ ++.-+-....+...|.....+.
T Consensus 89 ~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 126 (153)
T 3cz5_A 89 QGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp CSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCC
Confidence 221111 11233344 5666666677888888776654
No 151
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}
Probab=22.84 E-value=1.5e+02 Score=28.06 Aligned_cols=55 Identities=11% Similarity=0.116 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEe
Q 013195 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383 (448)
Q Consensus 327 ~t~e~~~~~i~~ir~~~pgi~i~~~~IvG~PgET~ed~~~tl~~i~~l~~~~v~i~~ 383 (448)
.+.+++...++.+.+..+++.+.+|+=.|| | +.+++.+|+..+.+.+..-+++=-
T Consensus 83 vt~~em~~~~~~I~r~~~~~PviaD~d~Gy-g-~~~~v~~tv~~l~~aGaagv~iED 137 (318)
T 1zlp_A 83 LTTTEVVEATRRITAAAPNLCVVVDGDTGG-G-GPLNVQRFIRELISAGAKGVFLED 137 (318)
T ss_dssp SCHHHHHHHHHHHHHHSSSSEEEEECTTCS-S-SHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCHHHHHHHHHHHHhhccCCCEEEeCCCCC-C-CHHHHHHHHHHHHHcCCcEEEECC
Confidence 689999999999999988899999999997 6 888999999888889988887743
No 152
>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*
Probab=22.57 E-value=4.2e+02 Score=25.43 Aligned_cols=92 Identities=15% Similarity=0.212 Sum_probs=52.0
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHHHHHHHh
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (448)
.++++++++++.+.+.|++.+-+=- |.+. ..-.+.++++.+.++ ....+++. .|-..-.+...++.+.+.
T Consensus 141 ~~~e~~~~~a~~~~~~Gf~~~KlK~------g~~~-~~d~~~v~avR~a~g--~~~~L~vD-aN~~w~~~~A~~~~~~l~ 210 (379)
T 3r0u_A 141 GNVAETIQNIQNGVEANFTAIKVKT------GADF-NRDIQLLKALDNEFS--KNIKFRFD-ANQGWNLAQTKQFIEEIN 210 (379)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEEC------SSCH-HHHHHHHHHHHHHCC--TTSEEEEE-CTTCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEeeec------CCCH-HHHHHHHHHHHHhcC--CCCeEEEe-CCCCcCHHHHHHHHHHHh
Confidence 3688999999999999999887732 1110 112567777777765 45677776 343222222233444444
Q ss_pred C--CCcccccccccCCCCHHHHHhc
Q 013195 301 H--PCVYSFLHVPVQSGSDAVLSAM 323 (448)
Q Consensus 301 ~--~~~~~~l~iglES~s~~vLk~m 323 (448)
. .+ ..++.=|+...+.+.++.+
T Consensus 211 ~~~~~-l~~iEeP~~~~d~~~~~~l 234 (379)
T 3r0u_A 211 KYSLN-VEIIEQPVKYYDIKAMAEI 234 (379)
T ss_dssp TSCCC-EEEEECCSCTTCHHHHHHH
T ss_pred hcCCC-cEEEECCCCcccHHHHHHH
Confidence 3 22 3455555555454444444
No 153
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=22.37 E-value=2e+02 Score=25.11 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=46.4
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecC------------CCCCcEEEEeecccccchHHHHHHHHHHHhc--C
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--A 124 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~--~ 124 (448)
++|++ +||.....=...++..|...|+..... ..+-|++++-|-+ ..+ ..+.+.++.+++ +
T Consensus 60 ~~I~i--~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~DlvI~iS~S--G~t-~~~i~~~~~ak~~~~ 134 (220)
T 3etn_A 60 GKLVT--SGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISNS--GKT-REIVELTQLAHNLNP 134 (220)
T ss_dssp CCEEE--ECSHHHHHHHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEEECSS--SCC-HHHHHHHHHHHHHCT
T ss_pred CEEEE--EEecHHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhhccCCCCCEEEEEcCC--CCC-HHHHHHHHHHHhcCC
Confidence 45665 477777777888999999999765321 2345777774433 333 346778888888 8
Q ss_pred CCCEE-EEcc
Q 013195 125 KKPLV-VAGC 133 (448)
Q Consensus 125 ~~~vV-vgGc 133 (448)
|.+|| +++.
T Consensus 135 Ga~vI~IT~~ 144 (220)
T 3etn_A 135 GLKFIVITGN 144 (220)
T ss_dssp TCEEEEEESC
T ss_pred CCeEEEEECC
Confidence 98765 5553
No 154
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=22.34 E-value=7.1e+02 Score=26.32 Aligned_cols=163 Identities=12% Similarity=-0.025 Sum_probs=90.8
Q ss_pred cCHHHHHHHHHHHHHC--CCcEEEEEecCCCC----CCCCCCCCHHHHHHHHHHhCCCCCcc-eEEE----eec-CCcCh
Q 013195 221 YTVESLVGRVRTVIAD--GVKEVWLSSEDTGA----YGRDIGVNLPILLNAIVAELPPDGST-MLRI----GMT-NPPFI 288 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~--G~~ei~~~~~~~~~----yg~d~~~~l~~ll~~l~~~~~~~~~~-~iri----~~~-~p~~i 288 (448)
.+.++.+.-++.|.+. |+..|...|...+. |.. .+-.+.++++.+.++..... +.|. +|. .|..+
T Consensus 122 ~~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~~---e~p~e~l~~l~~~~~~~~l~~l~R~~n~vgy~~~p~~~ 198 (718)
T 3bg3_A 122 VRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLY---ECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNV 198 (718)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHTSC---CCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEecCCcchhhccccCC---CCHHHHHHHHHHHcccchHHHHhcccccccccccCCcc
Confidence 6889999999999887 68778887543311 111 23367778887766511111 1111 111 22222
Q ss_pred hHHHHHHHHHHhCCCcccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEe----CCCC---CH
Q 013195 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG----FPGE---TD 361 (448)
Q Consensus 289 ~~~l~el~~l~~~~~~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~IvG----~PgE---T~ 361 (448)
.+. .+......+ ...+++-. |.+ ..+.+...++.+++. |..+..++.+. -|.. +.
T Consensus 199 ~~~--~i~~a~~~G--vd~irIf~-s~n-----------~l~~l~~~i~~ak~~--G~~v~~~i~~~~d~~dp~r~~~~~ 260 (718)
T 3bg3_A 199 VFK--FCEVAKENG--MDVFRVFD-SLN-----------YLPNMLLGMEAAGSA--GGVVEAAISYTGDVADPSRTKYSL 260 (718)
T ss_dssp HHH--HHHHHHHHT--CCEEEEEC-SSC-----------CHHHHHHHHHHHHTT--TSEEEEEEECCSCTTCTTCCTTCH
T ss_pred hHH--HHHHHHhcC--cCEEEEEe-cHH-----------HHHHHHHHHHHHHHc--CCeEEEEEEeeccccCCCCCCCCH
Confidence 221 133333322 23444432 322 356788889999988 88877777665 2332 57
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeceeCCCCcccCCCCCCHHHHHHHHHHHHHHH
Q 013195 362 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414 (448)
Q Consensus 362 ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~ 414 (448)
+.+.+.++.+.+.+.+.+.+- .|-- -..+....+..+.|.+..
T Consensus 261 e~~~~~a~~l~~~Ga~~I~l~------DT~G----~~~P~~v~~lV~~lk~~~ 303 (718)
T 3bg3_A 261 QYYMGLAEELVRAGTHILCIK------DMAG----LLKPTACTMLVSSLRDRF 303 (718)
T ss_dssp HHHHHHHHHHHHHTCSEEEEE------CTTS----CCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCEEEEc------CcCC----CcCHHHHHHHHHHHHHhC
Confidence 778888888888888766542 2211 223555555655555443
No 155
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=22.28 E-value=1.6e+02 Score=23.43 Aligned_cols=72 Identities=11% Similarity=0.165 Sum_probs=53.1
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccc---hHHHHHHHHHHHhcCCCCEEEEccccc
Q 013195 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSP---SQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~---a~~~~~~~i~~~~~~~~~vVvgGc~a~ 136 (448)
.+.+..+.-++...-++.+...|.... .....++|+-..|..- +...+..+.+++++.|..+++.|+.++
T Consensus 23 ~i~v~~l~G~L~f~~a~~~~~~l~~~~-------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~ 95 (135)
T 4dgf_A 23 GVEIYEINGPFFFGVADRLKGVLDVIE-------ETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVSDR 95 (135)
T ss_dssp TEEEEECCSSBSHHHHHHHTTGGGGCS-------SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEESCCHH
T ss_pred CEEEEEeeceEEehhHHHHHHHHHHhc-------CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 478888899999999999988886431 4467888876555442 345556667788888999999998765
Q ss_pred cc
Q 013195 137 GS 138 (448)
Q Consensus 137 ~~ 138 (448)
..
T Consensus 96 v~ 97 (135)
T 4dgf_A 96 LY 97 (135)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 156
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A
Probab=22.11 E-value=1.7e+02 Score=23.15 Aligned_cols=55 Identities=5% Similarity=-0.005 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEEEE--eCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCcc
Q 013195 330 SDFRTVVDTLIELVPGMQIATDIIC--GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (448)
Q Consensus 330 e~~~~~i~~ir~~~pgi~i~~~~Iv--G~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~~ 392 (448)
+.+....+.+++..|+..+..-++= +.| ++.+.++-+ +...+.+.+|.+.+|...
T Consensus 20 ~~~~~la~~l~~~~~~~~V~~a~le~~~~P-----sl~~~l~~l---g~~~v~v~Plfl~~G~h~ 76 (133)
T 2xws_A 20 EVMELHRKRIEESGAFDEVKIAFAARKRRP-----MPDEAIREM---NCDIIYVVPLFISYGLHV 76 (133)
T ss_dssp HHHHHHHHHHHHHTSSSEEEEEESSTTCSS-----CHHHHHHHC---CCSEEEEEECCSSCCHHH
T ss_pred HHHHHHHHHHHhhCCCCcEEeeeeecCCCC-----CHHHHHHHc---CCCEEEEEeeeeCCCcch
Confidence 4567777778777776777666665 655 344445444 888999999999999744
No 157
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=21.80 E-value=5e+02 Score=24.32 Aligned_cols=141 Identities=16% Similarity=0.158 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCC-CCHHHHHHHHHHhCCCCCcceEEE-eecCCcChhHHHHHHHHHHhC
Q 013195 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRI-GMTNPPFILEHLKEIAEVLRH 301 (448)
Q Consensus 224 e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~-~~l~~ll~~l~~~~~~~~~~~iri-~~~~p~~i~~~l~el~~l~~~ 301 (448)
+.+++.++.+.+.|..-|-+-++.+.....+.. ....++++.+.+.+ ...+.+ .+-+|+.-.+-++...+....
T Consensus 74 ~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~vV~~v~~~~----~vplsI~DT~~~~~~~~V~eaal~aga~ 149 (310)
T 2h9a_B 74 NDPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAEVCKAVADAI----DVPLMIIGCGVEEKDAEIFPVIGEALSG 149 (310)
T ss_dssp TCHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHC----SSCEEEECCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHHHHHHHHHhC----CceEEEECCCCCCCCHHHHHHHHHhCCC
Confidence 788888988899999988887653221111111 12344666666543 356778 763333222222222222211
Q ss_pred -CCcccccccccCCCCHHHHHhc---CCC----C--CHHHHHHHHHHHHHhCCCC---EEEEEEEEeCCCCCHHHHHHHH
Q 013195 302 -PCVYSFLHVPVQSGSDAVLSAM---NRE----Y--TLSDFRTVVDTLIELVPGM---QIATDIICGFPGETDEDFNQTV 368 (448)
Q Consensus 302 -~~~~~~l~iglES~s~~vLk~m---~R~----~--t~e~~~~~i~~ir~~~pgi---~i~~~~IvG~PgET~ed~~~tl 368 (448)
..+.+.++-. -.++++... +-+ + +.+.+.+.++.+.++ |+ .+..|-.+|+.|-+.+.-.+++
T Consensus 150 ~k~iINdvs~~---~~~~~~~~aa~~g~~vv~m~~~dv~~l~~~~~~a~~~--Gi~~e~IilDPg~g~~g~~~e~~~~~l 224 (310)
T 2h9a_B 150 RNCLLSSATKD---NYKPIVATCMVHGHSVVASAPLDINLSKQLNIMIMEM--NLAPNRIIMDPLIGALGYGIEYSYSII 224 (310)
T ss_dssp SCCEEEEECTT---THHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHTT--TCCGGGEEEECCCCCTTTTHHHHHHHH
T ss_pred CCCEEEECCCC---ccHHHHHHHHHhCCCEEEEChhHHHHHHHHHHHHHHC--CCChhhEEEeCCCccccCchHhHHHHH
Confidence 1133444332 134444332 111 1 467788888888888 77 5888888887676655544667
Q ss_pred HHHHh
Q 013195 369 NLIKE 373 (448)
Q Consensus 369 ~~i~~ 373 (448)
+.++.
T Consensus 225 ~~ir~ 229 (310)
T 2h9a_B 225 ERMRL 229 (310)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76666
No 158
>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*
Probab=21.57 E-value=3.3e+02 Score=26.35 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=18.6
Q ss_pred cCHHHHHHHH-HHHHHCCCcEEEE
Q 013195 221 YTVESLVGRV-RTVIADGVKEVWL 243 (448)
Q Consensus 221 r~~e~Iv~ei-~~l~~~G~~ei~~ 243 (448)
.+++++.+++ +.+.+.|++.+-+
T Consensus 138 ~~~e~~~~~a~~~~~~~G~~~~Kl 161 (393)
T 4dwd_A 138 RSVDEVVREVARRVEAEQPAAVKI 161 (393)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEE
Confidence 3588888888 8888888888776
No 159
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=21.57 E-value=2.6e+02 Score=21.03 Aligned_cols=96 Identities=6% Similarity=0.015 Sum_probs=54.4
Q ss_pred cChhHHHHHHHHHHhCCCeeec--C--------CCCCcEEEEeecccccchHHHHHHHHHHHhcC--CCCE-EEEccccc
Q 013195 70 HNQSDSEYMAGQLSAFGYALTD--N--------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPL-VVAGCVPQ 136 (448)
Q Consensus 70 ~N~~dse~~~~~L~~~G~~~~~--~--------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~--~~~v-VvgGc~a~ 136 (448)
-|....+.+...|+..|+.+.. + ....|+|+++...-. . ....+++++++. +.+| ++++....
T Consensus 11 d~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~dlvi~D~~l~~-~---~g~~~~~~l~~~~~~~~ii~~s~~~~~ 86 (135)
T 3eqz_A 11 DDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNKQDIIILDLMMPD-M---DGIEVIRHLAEHKSPASLILISGYDSG 86 (135)
T ss_dssp SCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCCTTEEEEEECCTTT-T---HHHHHHHHHHHTTCCCEEEEEESSCHH
T ss_pred CCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhccCCCEEEEeCCCCC-C---CHHHHHHHHHhCCCCCCEEEEEeccch
Confidence 4666677888888888766532 1 122799999654322 1 234455666544 3444 45554332
Q ss_pred cch--h-h-hcC--Cc-cEEEcCCchhHHHHHHHHHhcCC
Q 013195 137 GSR--D-L-KEL--EG-VSIVGVQQIDRVVEVVEETLKGH 169 (448)
Q Consensus 137 ~~~--e-~-~~~--~~-d~vvg~~~~~~i~~~l~~~~~g~ 169 (448)
... + . ..+ .+ +++.-+-....+.+.|+....+.
T Consensus 87 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 87 VLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred hHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 111 1 1 122 22 45677777788888888876654
No 160
>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
Probab=21.57 E-value=3.8e+02 Score=25.78 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=29.7
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEe
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~ 281 (448)
.+++++.++++.+.+.|++.+-+- ++ .+. ..-.+.++++.+.+. ....+++.
T Consensus 150 ~~~e~~~~~a~~~~~~G~~~iKiK---vG---~~~-~~d~~~v~avR~a~g--~d~~l~vD 201 (389)
T 3ozy_A 150 LTPDQAADELAGWVEQGFTAAKLK---VG---RAP-RKDAANLRAMRQRVG--ADVEILVD 201 (389)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEE---CC---SCH-HHHHHHHHHHHHHHC--TTSEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEeec---cC---CCH-HHHHHHHHHHHHHcC--CCceEEEE
Confidence 467888888888888888877662 11 110 112455566655553 33455554
No 161
>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A
Probab=21.56 E-value=4.4e+02 Score=25.87 Aligned_cols=99 Identities=12% Similarity=0.073 Sum_probs=51.6
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCC--CCCCCCC----CCCHHHHHHHHHHhCCCCCcceEEEeecCCcChhHHHHH
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDT--GAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~--~~yg~d~----~~~l~~ll~~l~~~~~~~~~~~iri~~~~p~~i~~~l~e 294 (448)
.++++++++++.+++.|++.|-+--... ..+|... ...-.+.++++.+.+. ....+++. .|...-.+...+
T Consensus 145 ~~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~~~G~~~~~~~~~~d~e~v~avR~avG--~d~~L~vD-an~~~t~~~A~~ 221 (433)
T 3rcy_A 145 TSADMAAESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAVG--DKADLLFG-THGQFTTAGAIR 221 (433)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHT--TSSEEEEC-CCSCBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCcccccCCCcchhhHHHHHHHHHHHHHHhC--CCCeEEEe-CCCCCCHHHHHH
Confidence 5799999999999999999988721100 0112110 0112466777777664 45566665 332222222223
Q ss_pred HHHHHhCCCcccccccccCCCCHHHHHhc
Q 013195 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAM 323 (448)
Q Consensus 295 l~~l~~~~~~~~~l~iglES~s~~vLk~m 323 (448)
+.+.+...+ ..++.=|+...+.+.++.+
T Consensus 222 ~~~~Le~~~-i~~iEeP~~~~~~~~~~~l 249 (433)
T 3rcy_A 222 LGQAIEPYS-PLWYEEPVPPDNVGAMAQV 249 (433)
T ss_dssp HHHHHGGGC-CSEEECCSCTTCHHHHHHH
T ss_pred HHHHhhhcC-CCEEECCCChhhHHHHHHH
Confidence 334443322 2355555554444444433
No 162
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=21.49 E-value=3.5e+02 Score=22.48 Aligned_cols=93 Identities=11% Similarity=0.082 Sum_probs=51.3
Q ss_pred ChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhcC--CCCEE-EEccccc
Q 013195 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLV-VAGCVPQ 136 (448)
Q Consensus 71 N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~--~~~vV-vgGc~a~ 136 (448)
+....+.+...|...||++... ....|+|++.-..-... ..++++++++. +.+|| ++|....
T Consensus 13 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~----g~~~~~~l~~~~~~~~ii~ls~~~~~ 88 (208)
T 1yio_A 13 DMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMS----GIELQEQLTAISDGIPIVFITAHGDI 88 (208)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESCCSSSC----HHHHHHHHHHTTCCCCEEEEESCTTS
T ss_pred CHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCCCCCCC----HHHHHHHHHhcCCCCCEEEEeCCCCH
Confidence 5556677888888889886431 34579999964332212 23445555543 44554 5554322
Q ss_pred cch-hhhcCCc-cEEEcCCchhHHHHHHHHHhc
Q 013195 137 GSR-DLKELEG-VSIVGVQQIDRVVEVVEETLK 167 (448)
Q Consensus 137 ~~~-e~~~~~~-d~vvg~~~~~~i~~~l~~~~~ 167 (448)
... ......+ +++.-+-....+...|.....
T Consensus 89 ~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (208)
T 1yio_A 89 PMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQ 121 (208)
T ss_dssp CCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 111 1123334 456666666677777765543
No 163
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=21.43 E-value=1.1e+02 Score=27.86 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=28.6
Q ss_pred CCCCCCCceEEEEecCCc---cC--------hhHHHHHHHHHHhCCCeee
Q 013195 52 SPKIPGTETIYMKTFGCS---HN--------QSDSEYMAGQLSAFGYALT 90 (448)
Q Consensus 52 ~~~~~~~~~~~~~t~GC~---~N--------~~dse~~~~~L~~~G~~~~ 90 (448)
.|+++.|+||.|+--+|. .+ ..|.-.-...|++.||+++
T Consensus 3 ~~m~~~mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~ 52 (247)
T 3n7t_A 3 GSMAPLPRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVD 52 (247)
T ss_dssp ----CCCSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEE
T ss_pred ccccccCCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEE
Confidence 466666889999999984 23 7777788899999999875
No 164
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=21.40 E-value=3.8e+02 Score=22.75 Aligned_cols=95 Identities=11% Similarity=0.112 Sum_probs=53.1
Q ss_pred cChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhcC--CCCEE-EEcccc
Q 013195 70 HNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLV-VAGCVP 135 (448)
Q Consensus 70 ~N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~--~~~vV-vgGc~a 135 (448)
=+..-.+.+...|+..||++... ....|++++.-..-... ..++++.+++. +.+|| +++...
T Consensus 15 d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~----g~~~~~~l~~~~~~~~ii~lt~~~~ 90 (233)
T 1ys7_A 15 DDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLD----GVSVVTALRAMDNDVPVCVLSARSS 90 (233)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSCSSSC----HHHHHHHHHHTTCCCCEEEEECCCT
T ss_pred CCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCC----HHHHHHHHHhcCCCCCEEEEEcCCC
Confidence 35666778888898889886432 23579999965332212 23445555443 44554 555432
Q ss_pred ccch-hhhcCCcc-EEEcCCchhHHHHHHHHHhcC
Q 013195 136 QGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKG 168 (448)
Q Consensus 136 ~~~~-e~~~~~~d-~vvg~~~~~~i~~~l~~~~~g 168 (448)
.... +.....++ ++.-+-....+...|.....+
T Consensus 91 ~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (233)
T 1ys7_A 91 VDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125 (233)
T ss_dssp TTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 2111 11123344 566666667777777766544
No 165
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=21.38 E-value=2.9e+02 Score=24.20 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEE-eecCCcChhHHHHHHHHHHhCCC
Q 013195 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI-GMTNPPFILEHLKEIAEVLRHPC 303 (448)
Q Consensus 225 ~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri-~~~~p~~i~~~l~el~~l~~~~~ 303 (448)
+.++.++.+.+.|+..+.+.+.+-...+. ..+ ++++++.+... . .+-+ +.++. .+. +..++..+
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~---~~~-~~i~~i~~~~~---i-pv~v~ggi~~---~~~---~~~~l~~G- 96 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAFGRG---SNH-ELLAEVVGKLD---V-QVELSGGIRD---DES---LAAALATG- 96 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHTTSC---CCH-HHHHHHHHHCS---S-EEEEESSCCS---HHH---HHHHHHTT-
T ss_pred CHHHHHHHHHHcCCCEEEEEcCcccccCC---ChH-HHHHHHHHhcC---C-cEEEECCCCC---HHH---HHHHHHcC-
Confidence 44555667778899999998754332222 346 88999987642 2 2222 22221 112 33344432
Q ss_pred cccccccccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE----------eCCCCCHHHHHHHHHHHHh
Q 013195 304 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC----------GFPGETDEDFNQTVNLIKE 373 (448)
Q Consensus 304 ~~~~l~iglES~s~~vLk~m~R~~t~e~~~~~i~~ir~~~pgi~i~~~~Iv----------G~PgET~ed~~~tl~~i~~ 373 (448)
+..+++|.++..+ .+.+.+.++.+.. .+.+..+.-+ |....+. +..+.++.+.+
T Consensus 97 -ad~V~lg~~~l~~-----------p~~~~~~~~~~g~---~~~~~ld~~~~~~~~~v~~~g~~~~~~-~~~e~~~~~~~ 160 (244)
T 2y88_A 97 -CARVNVGTAALEN-----------PQWCARVIGEHGD---QVAVGLDVQIIDGEHRLRGRGWETDGG-DLWDVLERLDS 160 (244)
T ss_dssp -CSEEEECHHHHHC-----------HHHHHHHHHHHGG---GEEEEEEEEEETTEEEEEEGGGTEEEE-EHHHHHHHHHH
T ss_pred -CCEEEECchHhhC-----------hHHHHHHHHHcCC---CEEEEEeccccCCCCEEEECCccCCCC-CHHHHHHHHHh
Confidence 5677777554211 2334444443321 2334444332 3221222 44556677778
Q ss_pred cCCCeEEEEece
Q 013195 374 YKFPQVHISQFY 385 (448)
Q Consensus 374 l~~~~v~i~~~~ 385 (448)
.+++.+.++.-+
T Consensus 161 ~G~~~i~~~~~~ 172 (244)
T 2y88_A 161 EGCSRFVVTDIT 172 (244)
T ss_dssp TTCCCEEEEETT
T ss_pred CCCCEEEEEecC
Confidence 888887766544
No 166
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=20.88 E-value=2.3e+02 Score=21.96 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=51.4
Q ss_pred cChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhc----CCCCEE-EEcc
Q 013195 70 HNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS----AKKPLV-VAGC 133 (448)
Q Consensus 70 ~N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~----~~~~vV-vgGc 133 (448)
-+....+.+...|...||++... ....|+|+++...-... ..++++++++ .+.+|| +++.
T Consensus 16 ~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~----g~~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 16 TQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKIS----GMDLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp TTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSC----HHHHHHHHHTSTTTTTSCEEEEESS
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCC----HHHHHHHHHcCcccCCCCEEEEeCC
Confidence 34556677888888889877532 13579999975432222 2445666654 234555 5543
Q ss_pred ccccchh-hhcCCcc-EEEcCCchhHHHHHHHHHh
Q 013195 134 VPQGSRD-LKELEGV-SIVGVQQIDRVVEVVEETL 166 (448)
Q Consensus 134 ~a~~~~e-~~~~~~d-~vvg~~~~~~i~~~l~~~~ 166 (448)
....... .....++ ++.-+-....+...|....
T Consensus 92 ~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~ 126 (147)
T 2zay_A 92 ATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVL 126 (147)
T ss_dssp CCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 2211111 1123344 5666666667777776554
No 167
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=20.70 E-value=1.8e+02 Score=26.42 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEEEEE-----------eCCCCCHHHHHHHHHHHHhcCCCeEEEEeceeCCCCc
Q 013195 331 DFRTVVDTLIELVPGMQIATDIIC-----------GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 391 (448)
Q Consensus 331 ~~~~~i~~ir~~~pgi~i~~~~Iv-----------G~PgET~ed~~~tl~~i~~l~~~~v~i~~~~p~pGT~ 391 (448)
.+....+.+++.+|+..+..-|+- |+... ++.+.++-+.+-+.+.+-+.++.+.+|+.
T Consensus 21 ~~~~~~~~v~~~~p~~~V~~af~s~~i~~~l~~~~g~~~p---si~~aL~~l~~~G~~~vvV~Pl~l~~G~~ 89 (264)
T 2xwp_A 21 NIVACERDLAASCPDRDLFRAFTSGMIIRKLRQRDGIDID---TPLQALQKLAAQGYQDVAIQSLHIINGDE 89 (264)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHCCCCC---CHHHHHHHHHHHTCCEEEEEECCSSSSHH
T ss_pred HHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHhcCCCCC---CHHHHHHHHHhCCCCEEEEEeCcccCcHH
Confidence 344455555556666666555531 44222 33345555556666667777777766653
No 168
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=20.60 E-value=4.4e+02 Score=23.25 Aligned_cols=44 Identities=9% Similarity=0.104 Sum_probs=32.2
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCC
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~ 271 (448)
|..++++.++-++.+.+.|++-|.+..-+ ..-.+.++++.+.++
T Consensus 24 r~~~~~~~~~~~~al~~gGv~~iel~~k~---------~~~~~~i~~l~~~~~ 67 (224)
T 1vhc_A 24 ALDNADDILPLADTLAKNGLSVAEITFRS---------EAAADAIRLLRANRP 67 (224)
T ss_dssp CCSSGGGHHHHHHHHHHTTCCEEEEETTS---------TTHHHHHHHHHHHCT
T ss_pred eCCCHHHHHHHHHHHHHcCCCEEEEeccC---------chHHHHHHHHHHhCc
Confidence 44677788888899999999988886311 123678888888764
No 169
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=20.58 E-value=4.8e+02 Score=24.79 Aligned_cols=51 Identities=10% Similarity=-0.031 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEe
Q 013195 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281 (448)
Q Consensus 222 ~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~ 281 (448)
+++++.++++.+.+.|++.|-+-... +. ....+.++++.+.++ ....+++.
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~iKik~g~------~~-~~~~e~v~avr~a~g--~d~~l~vD 195 (379)
T 2rdx_A 145 SEAETRAELARHRAAGYRQFQIKVGA------DW-QSDIDRIRACLPLLE--PGEKAMAD 195 (379)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEECCS------CH-HHHHHHHHHHGGGSC--TTCEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccC------CH-HHHHHHHHHHHHhcC--CCCEEEEE
Confidence 46777777777777787777663211 10 112456666665553 34455554
No 170
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=20.48 E-value=2.6e+02 Score=20.58 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=47.9
Q ss_pred ChhHHHHHHHHHHhCCCeeecC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhcC--CCCEE-EEccccc
Q 013195 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLV-VAGCVPQ 136 (448)
Q Consensus 71 N~~dse~~~~~L~~~G~~~~~~-----------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~--~~~vV-vgGc~a~ 136 (448)
+....+.+...|...||++... ....|+++++...-... ..++++++++. ..+|| +++....
T Consensus 9 ~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~----g~~~~~~l~~~~~~~~ii~~s~~~~~ 84 (121)
T 2pl1_A 9 NALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDED----GLSLIRRWRSNDVSLPILVLTARESW 84 (121)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSC----HHHHHHHHHHTTCCSCEEEEESCCCH
T ss_pred cHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCC----HHHHHHHHHhcCCCCCEEEEecCCCH
Confidence 3445667788888888876422 23579999964332212 23445555433 34554 5553221
Q ss_pred cch-hhhcCCc-cEEEcCCchhHHHHHHHHH
Q 013195 137 GSR-DLKELEG-VSIVGVQQIDRVVEVVEET 165 (448)
Q Consensus 137 ~~~-e~~~~~~-d~vvg~~~~~~i~~~l~~~ 165 (448)
... +.....+ +++.-+-....+...++..
T Consensus 85 ~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 115 (121)
T 2pl1_A 85 QDKVEVLSAGADDYVTKPFHIEEVMARMQAL 115 (121)
T ss_dssp HHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCccceEECCCCHHHHHHHHHHH
Confidence 111 1112333 4677766666777666654
No 171
>1luc_B Bacterial luciferase; monooxygenase, flavoprotein; 1.50A {Vibrio harveyi} SCOP: c.1.16.1 PDB: 1brl_B 1bsl_A 1xkj_A 3fgc_B*
Probab=20.40 E-value=4.4e+02 Score=24.37 Aligned_cols=110 Identities=8% Similarity=0.027 Sum_probs=60.9
Q ss_pred cCHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCCCCCCHHHHHHHHHHhCCCCCcceEEEeec-------CCcChhHHHH
Q 013195 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-------NPPFILEHLK 293 (448)
Q Consensus 221 r~~e~Iv~ei~~l~~~G~~ei~~~~~~~~~yg~d~~~~l~~ll~~l~~~~~~~~~~~iri~~~-------~p~~i~~~l~ 293 (448)
..++++++.++..-+.|+..+|+.+.....++. ..+-.-++-.+..... ++++++. +|-.+.+...
T Consensus 19 ~~~~~~~~~a~~AE~~Gfd~~w~~eh~~~~~~~--~~~p~~~la~~A~~T~-----ri~lgt~v~~~~~~~P~~~A~~~a 91 (324)
T 1luc_B 19 QVIEEMLDTAHYVDQLKFDTLAVYENHFSNNGV--VGAPLTVAGFLLGMTK-----NAKVASLNHVITTHHPVRVAEEAC 91 (324)
T ss_dssp HHHHHHHHHHHHHHTSSCCEEEECCCCSSSSCS--CSCHHHHHHHHHHHCS-----SSEEEEEEEECTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCEEEeccCCCCCCCC--CCCHHHHHHHHHHhcC-----ceEEEEeeeeCCccCHHHHHHHHH
Confidence 356777777777777899999987643332221 1234567777776543 3444321 2322223222
Q ss_pred HHHHHHhCCCcccccccccCCCC-HHHHHhcCCCC--CHHHHHHHHHHHHHh
Q 013195 294 EIAEVLRHPCVYSFLHVPVQSGS-DAVLSAMNREY--TLSDFRTVVDTLIEL 342 (448)
Q Consensus 294 el~~l~~~~~~~~~l~iglES~s-~~vLk~m~R~~--t~e~~~~~i~~ir~~ 342 (448)
.| +.+..+ ++.+|+=++. +.....++..+ ..+.+.+.++.+++.
T Consensus 92 tL-d~ls~G----R~~lGig~g~~~~~~~~~G~~~~~r~~~~~E~l~~l~~l 138 (324)
T 1luc_B 92 LL-DQMSEG----RFAFGFSDCEKSADMRFFNRPTDSQFQLFSECHKIINDA 138 (324)
T ss_dssp HH-HHHTTS----CEEEEEECCCCHHHHHHTTCCGGGHHHHHHHHHHHHHHH
T ss_pred HH-HHHcCC----CEEEEEecCCCHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 22 222222 5667777776 45667777654 345566666666653
No 172
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*
Probab=20.34 E-value=3e+02 Score=25.01 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=36.4
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhCCCeeecCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEE
Q 013195 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVV 130 (448)
Q Consensus 59 ~~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~vVv 130 (448)
.+..+...|..+...|-+.+...+. ....+|+++++.........+.+..+++.+++.+.+|++
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~v~~ 165 (309)
T 3umo_A 102 EQYRFVMPGAALNEDEFRQLEEQVL--------EIESGAILVISGSLPPGVKLEKLTQLISAAQKQGIRCIV 165 (309)
T ss_dssp CEEEEECCCCCCCHHHHHHHHHHHT--------TSCTTCEEEEESCCCTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEEcCCCCCCHHHHHHHHHHHH--------hcCCCCEEEEEccCCCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 3555666777655555443333332 124578888843222122334567778888888887775
No 173
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=20.19 E-value=1.6e+02 Score=25.24 Aligned_cols=69 Identities=16% Similarity=0.285 Sum_probs=44.9
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhCCCeeecC------------CCCCcEEEEeecccccchHHHHHHHHHHHhcCCCC
Q 013195 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP 127 (448)
Q Consensus 60 ~~~~~t~GC~~N~~dse~~~~~L~~~G~~~~~~------------~~~aDvv~intctv~~~a~~~~~~~i~~~~~~~~~ 127 (448)
+|++. ||.....-...++..|...|...... ..+-|++++-| ....+ ..+.+.++.++++|.+
T Consensus 47 ~I~i~--G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dvvI~iS--~sG~t-~~~~~~~~~ak~~g~~ 121 (201)
T 3fxa_A 47 KIVVA--GCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILIS--KGGNT-GELLNLIPACKTKGST 121 (201)
T ss_dssp CEEEE--CCTHHHHHHHHHHHHHHHTTCCEEECCHHHHTTTGGGGCCTTCEEEEEC--SSSCC-HHHHTTHHHHHHHTCE
T ss_pred cEEEE--EecHHHHHHHHHHHHHHhcCCcEEEeCchHHHhhhhhcCCCCCEEEEEe--CCCCC-HHHHHHHHHHHHcCCe
Confidence 56554 66666777888888899888765321 23457777734 33333 2356778888888887
Q ss_pred EE-EEcc
Q 013195 128 LV-VAGC 133 (448)
Q Consensus 128 vV-vgGc 133 (448)
|| +++.
T Consensus 122 vi~IT~~ 128 (201)
T 3fxa_A 122 LIGVTEN 128 (201)
T ss_dssp EEEEESC
T ss_pred EEEEECC
Confidence 65 5553
No 174
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A
Probab=20.15 E-value=82 Score=28.90 Aligned_cols=28 Identities=11% Similarity=0.303 Sum_probs=24.0
Q ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEec
Q 013195 219 GSYTVESLVGRVRTVIADGVKEVWLSSE 246 (448)
Q Consensus 219 rsr~~e~Iv~ei~~l~~~G~~ei~~~~~ 246 (448)
-..++++.++-++.+.+.|++.|.+++-
T Consensus 15 G~~~~~~sl~~~~~a~~~G~~~i~~T~H 42 (262)
T 3qy7_A 15 GAGDSADSIEMARAAVRQGIRTIIATPH 42 (262)
T ss_dssp SCSSHHHHHHHHHHHHHTTCCEEECCCB
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3667888888899999999999999874
Done!