Query 013198
Match_columns 448
No_of_seqs 217 out of 1892
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 01:24:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0015 PurB Adenylosuccinate 100.0 2E-79 4.2E-84 633.4 31.3 340 87-447 1-346 (438)
2 PLN02848 adenylosuccinate lyas 100.0 3.8E-79 8.2E-84 641.3 33.7 371 74-447 2-375 (458)
3 PRK09285 adenylosuccinate lyas 100.0 4.7E-78 1E-82 633.5 33.2 368 76-447 1-372 (456)
4 cd01598 PurB PurB_like adenylo 100.0 5.7E-73 1.2E-77 589.8 32.1 347 98-447 1-350 (425)
5 cd03302 Adenylsuccinate_lyase_ 100.0 1.8E-72 3.9E-77 589.5 31.4 340 87-447 1-351 (436)
6 PRK07380 adenylosuccinate lyas 100.0 5.5E-72 1.2E-76 584.4 31.2 329 87-447 2-339 (431)
7 PRK07492 adenylosuccinate lyas 100.0 1.4E-71 3E-76 582.0 32.8 333 87-447 1-342 (435)
8 PRK08540 adenylosuccinate lyas 100.0 9.7E-72 2.1E-76 586.3 31.1 342 82-447 1-351 (449)
9 PRK08470 adenylosuccinate lyas 100.0 2.2E-71 4.8E-76 582.0 32.2 332 87-447 2-339 (442)
10 cd01360 Adenylsuccinate_lyase_ 100.0 1.9E-70 4.1E-75 566.7 32.1 327 90-447 1-336 (387)
11 cd01595 Adenylsuccinate_lyase_ 100.0 1.3E-70 2.9E-75 566.9 30.7 328 98-447 1-337 (381)
12 PRK06390 adenylosuccinate lyas 100.0 6.5E-70 1.4E-74 572.5 31.2 342 82-447 1-351 (451)
13 TIGR00928 purB adenylosuccinat 100.0 2.5E-69 5.4E-74 566.1 30.3 336 87-447 1-345 (435)
14 PRK05975 3-carboxy-cis,cis-muc 100.0 4.4E-68 9.5E-73 542.2 32.2 335 85-444 9-347 (351)
15 TIGR02426 protocat_pcaB 3-carb 100.0 3E-67 6.6E-72 533.9 32.1 328 87-442 2-338 (338)
16 cd01597 pCLME prokaryotic 3-ca 100.0 3.8E-67 8.3E-72 549.9 33.6 337 87-447 2-346 (437)
17 PRK09053 3-carboxy-cis,cis-muc 100.0 7.4E-67 1.6E-71 549.6 30.8 339 87-447 8-355 (452)
18 COG0165 ArgH Argininosuccinate 100.0 1.9E-64 4.1E-69 521.1 28.5 329 83-447 2-355 (459)
19 cd01334 Lyase_I Lyase class I 100.0 4.5E-63 9.7E-68 500.8 25.8 312 108-445 1-325 (325)
20 PRK04833 argininosuccinate lya 100.0 9.5E-62 2.1E-66 510.9 28.1 331 85-447 2-354 (455)
21 TIGR00838 argH argininosuccina 100.0 1.9E-61 4.1E-66 509.1 28.6 330 86-447 1-352 (455)
22 PRK06705 argininosuccinate lya 100.0 4.8E-61 1E-65 510.3 29.0 332 85-447 10-362 (502)
23 PLN02646 argininosuccinate lya 100.0 9.2E-61 2E-65 505.0 28.5 330 85-447 17-368 (474)
24 cd01359 Argininosuccinate_lyas 100.0 2.5E-60 5.3E-65 498.2 25.9 315 103-447 4-332 (435)
25 PF00206 Lyase_1: Lyase; Inte 100.0 3.6E-61 7.7E-66 484.5 15.6 294 89-397 1-312 (312)
26 PRK12308 bifunctional arginino 100.0 5.8E-60 1.3E-64 514.1 26.1 334 85-447 2-354 (614)
27 PRK00855 argininosuccinate lya 100.0 4.9E-59 1.1E-63 491.2 28.5 332 85-447 5-356 (459)
28 PRK00485 fumC fumarate hydrata 100.0 9.5E-59 2.1E-63 489.2 28.5 328 104-447 41-396 (464)
29 PRK02186 argininosuccinate lya 100.0 1.5E-58 3.3E-63 521.3 28.6 335 86-447 408-762 (887)
30 cd01357 Aspartase Aspartase. T 100.0 3.2E-58 6.9E-63 483.4 29.0 321 104-447 37-391 (450)
31 PRK06389 argininosuccinate lya 100.0 4.3E-58 9.3E-63 476.7 27.3 323 85-447 2-347 (434)
32 PRK12273 aspA aspartate ammoni 100.0 7.6E-58 1.6E-62 482.9 28.4 320 105-447 45-398 (472)
33 KOG1316 Argininosuccinate lyas 100.0 7.9E-58 1.7E-62 449.7 23.4 328 84-447 6-358 (464)
34 PRK13353 aspartate ammonia-lya 100.0 5.6E-57 1.2E-61 476.4 27.8 321 104-447 42-396 (473)
35 TIGR00839 aspA aspartate ammon 100.0 5E-57 1.1E-61 475.5 27.4 327 104-447 39-394 (468)
36 TIGR00979 fumC_II fumarate hyd 100.0 8.6E-57 1.9E-61 473.1 25.9 322 105-447 39-393 (458)
37 cd01362 Fumarase_classII Class 100.0 2.6E-56 5.7E-61 469.3 27.7 329 104-447 37-392 (455)
38 cd01596 Aspartase_like asparta 100.0 1.7E-55 3.8E-60 462.3 27.6 323 104-447 37-391 (450)
39 PLN00134 fumarate hydratase; P 100.0 2.7E-55 5.9E-60 461.7 28.7 325 105-447 34-388 (458)
40 PRK12425 fumarate hydratase; P 100.0 4.3E-55 9.2E-60 460.7 27.0 326 104-447 39-394 (464)
41 PRK14515 aspartate ammonia-lya 100.0 9.9E-54 2.2E-58 451.0 26.8 328 104-447 48-402 (479)
42 KOG2700 Adenylosuccinate lyase 100.0 2.5E-44 5.4E-49 364.7 20.3 349 83-447 6-364 (481)
43 COG0114 FumC Fumarase [Energy 100.0 2.8E-41 6E-46 339.1 24.6 331 105-447 41-395 (462)
44 COG1027 AspA Aspartate ammonia 100.0 1.5E-39 3.2E-44 325.8 22.7 330 105-447 44-397 (471)
45 cd01594 Lyase_I_like Lyase cla 100.0 1.1E-34 2.4E-39 277.8 23.8 201 171-432 16-227 (231)
46 KOG1317 Fumarase [Energy produ 100.0 4.6E-34 1E-38 280.0 13.7 203 189-399 155-368 (487)
47 KOG2700 Adenylosuccinate lyase 99.8 7.7E-21 1.7E-25 194.0 3.4 348 68-446 58-407 (481)
48 PRK08937 adenylosuccinate lyas 99.8 3.1E-19 6.8E-24 170.7 9.7 109 335-447 22-136 (216)
49 PF08328 ASL_C: Adenylosuccina 98.8 2.9E-09 6.4E-14 91.8 2.0 42 406-447 1-42 (115)
50 PF14735 HAUS4: HAUS augmin-li 25.1 3.3E+02 0.0072 26.9 8.0 82 169-276 43-125 (238)
51 KOG4797 Transcriptional regula 24.7 2.1E+02 0.0046 25.0 5.6 36 200-236 55-90 (123)
52 PRK15444 pduC propanediol dehy 22.0 3.4E+02 0.0074 29.4 7.6 13 127-140 425-437 (554)
No 1
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2e-79 Score=633.43 Aligned_cols=340 Identities=35% Similarity=0.456 Sum_probs=312.8
Q ss_pred cCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHHhhhCC
Q 013198 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNH 166 (448)
Q Consensus 87 ~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e~~t~h 166 (448)
+|+||++ ++|+.+|||++++++|++||+||+++++ ++|+||++.+ +.|.+... +...|+++++++|++|||
T Consensus 1 ~~~RY~~--~em~~ifS~~~~~~~~l~vE~ala~A~a---elG~Ip~~a~---~~I~~~~~-~~~~d~~~i~eie~~t~H 71 (438)
T COG0015 1 LDGRYSS--PEMRAIFSEEAKLRAWLKVEAALARAQA---ELGVIPAEAA---AEIDAAAA-FAEFDLERIKEIEAETGH 71 (438)
T ss_pred CCcccCc--HHHHHHcCHHHHHHHHHHHHHHHHHHHH---HhCCCCHHHH---HHHHHHhc-ccccCHHHHHHHHHHhCC
Confidence 5899996 7999999999999999999999999999 5999997444 44555433 556799999999999999
Q ss_pred cHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeecccc
Q 013198 167 DVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTH 246 (448)
Q Consensus 167 Dv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH 246 (448)
||+|+++.|+++|++ ++++|||+|+|||||+||+++|++|++++ ++.+.|.++++.|.++|.+|+++||+||||
T Consensus 72 dV~a~v~~l~e~~~~-----~~~~~VH~GaTS~DI~Dta~~L~lk~a~~-ii~~~l~~l~~~L~~~A~~~k~t~m~GRTH 145 (438)
T COG0015 72 DVKALVRALAEKVGE-----EASEYVHFGATSQDIIDTALALQLKEALD-LILPDLKRLIEALAELALEHKDTPMLGRTH 145 (438)
T ss_pred CcHHHHHHHHHhcCc-----ccccceecccchHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCeeccccc
Confidence 999999999999985 47899999999999999999999999999 699999999999999999999999999999
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCCCcc
Q 013198 247 GQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQI 323 (448)
Q Consensus 247 ~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~~i 323 (448)
||||+|||||+++++|+++|.|+++||.++. ..|+++||+||+++++ +.+ ..+++.+++.|||..+|+++|+
T Consensus 146 gq~A~PtT~G~k~A~w~~el~R~~~rL~~~~~~~~~g~i~Ga~Gt~Aa~~----~~~-~~ve~~v~e~LGL~~~p~stq~ 220 (438)
T COG0015 146 GQPAEPTTFGKKFANWLAELLRHLERLEEAEERIIVGKIGGAVGTLAALG----DLG-AEVEERVAEKLGLKPAPISTQV 220 (438)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhHhhcC----chh-HHHHHHHHHHcCCCCCCCCccc
Confidence 9999999999999999999999999998885 7899999999988764 333 4688999999999999998899
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccee--eccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHhh
Q 013198 324 ETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFK--QVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM 401 (448)
Q Consensus 324 ~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s~G~~~--~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~~ 401 (448)
.+||++++++++++.++++|.||++|||+|+..++++ +++.+||+|||+||||+||+.+|++.|++.+++..+..+..
T Consensus 221 ~~RD~~ae~~~~La~i~~sl~k~a~dIr~l~~~e~~Ev~E~f~~gq~GSSaMPHKrNPi~~E~~~glar~~r~~~~~~~e 300 (438)
T COG0015 221 SPRDRIAEFFSALALLAGSLEKFARDIRLLQRTEVGEVEEPFAKGQVGSSAMPHKRNPIDSENVTGLARVARALVSTLLE 300 (438)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999865555 88889999999999999999999999988877777777777
Q ss_pred cCCCcccCCCCcchhhhh-hhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 402 KLPISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 402 ~l~~~~~eRDl~ds~~~r-~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
++ ..|||||+++|+++| ++++++.++..+|+.+..++++|.||++
T Consensus 301 ~~-~~whERdlt~ssver~~Lp~~~~~~~~aL~~~~~vl~~L~v~~~ 346 (438)
T COG0015 301 NL-VLWHERDLTDSSVERVILPDAFIAADGALNRLLNVLEGLEVNPE 346 (438)
T ss_pred Hh-HHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHH
Confidence 88 667999999999999 9999999999999999999999999986
No 2
>PLN02848 adenylosuccinate lyase
Probab=100.00 E-value=3.8e-79 Score=641.31 Aligned_cols=371 Identities=76% Similarity=1.214 Sum_probs=335.4
Q ss_pred cccccccccccCccCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCC---CCccHHHHHHHHHHHhcCC
Q 013198 74 REFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEV---PSFSEEAKSYLQGLIDGFN 150 (448)
Q Consensus 74 ~~~~~~~~~~~sp~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giI---p~~sa~a~~~l~~~~~~~~ 150 (448)
.+|+++++.++||+++||++++++|+++|||++++++|++||.+|+++|+ +.|+| |+.++++++.|.+.+..|.
T Consensus 2 ~~~~~~~~~~~~pl~~ry~~~~~e~~~ifSd~a~~~~~l~vE~ala~a~a---~~g~i~~~P~i~~~aa~~i~~~~~~~~ 78 (458)
T PLN02848 2 RDLELSNLTALSPLDGRYWSKVKDLRPIFSEFGLIRYRVLVEVKWLLKLS---QIPEVTEVPPFSDEANSFLEGIIAGFS 78 (458)
T ss_pred CCCCccccccCCCchhhhcCCcHHHHHHcCHHHHHHHHHHHHHHHHHHHH---hcCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 35778899999999999998778999999999999999999999999999 58888 8766677666766654576
Q ss_pred ccChHhhHHHHhhhCCcHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013198 151 MDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALC 230 (448)
Q Consensus 151 ~~d~~~i~~~e~~t~hDv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~ 230 (448)
.+|+++++++|+.++|||+++|++|+++|+..+++.+.++|||+|+|||||+||+++|++|+++..++.+.|..++++|.
T Consensus 79 ~~d~~~~~~~e~~t~hdv~a~~~~l~~~~~~~~~~~~~~~~vH~G~TsqDi~dTa~~L~lr~a~~~~l~~~L~~l~~aL~ 158 (458)
T PLN02848 79 VDDALEVKKIERVTNHDVKAVEYFLKQKCKSHPELAKVLEFFHFACTSEDINNLSHALMLKEGVNSVVLPTMDEIIKAIS 158 (458)
T ss_pred HhhHHHHHHHHHHhCCCcHHHHHHHHHHhccccchhhhhCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999999742212236799999999999999999999999998339999999999999
Q ss_pred HHHHHcccceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHcccccccccccccccccccccCCCCChhHHHHHHHH
Q 013198 231 EIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVK 310 (448)
Q Consensus 231 ~lA~~~~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~ 310 (448)
++|++|++++|+||||+|||+|||||+||++|+++|.|+++||.++...|+++|||||+++++..||++||+.+.+.+++
T Consensus 159 ~lA~~~~dt~m~GRTH~Q~A~PiTfG~~~a~w~~~L~r~~~rL~~~~l~g~~~GAvGt~aa~~~~~~~~d~~~v~~~la~ 238 (458)
T PLN02848 159 SLAHEFAYVPMLSRTHGQPASPTTLGKEMANFAYRLSRQRKQLSEVKIKGKFAGAVGNYNAHMSAYPEVDWPAVAEEFVT 238 (458)
T ss_pred HHHHHhcCCeeeccccCccceeehHHHHHHHHHHHHHHHHHHHHHHHhccEeecccchhhhhhhccCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997678999999999998767888999999999999
Q ss_pred hcCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceeeccCCCCcccCCCCCCcCchHHHHhhcccc
Q 013198 311 SLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLG 390 (448)
Q Consensus 311 ~LGl~~~~~~~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~ 390 (448)
.|||..++..+|+.+||++++++++++.++++|.|||+|+|.|.++|++.+...++++|||||||||||+.+|+++|+++
T Consensus 239 ~LGL~~~~~~~~v~~rD~~~e~~~~La~~a~~l~kia~Di~~~~e~ge~~e~~~~~~~GSS~MP~KrNPv~~E~i~~~a~ 318 (458)
T PLN02848 239 SLGLTFNPYVTQIEPHDYMAELFNAVSRFNNILIDFDRDIWSYISLGYFKQITKAGEVGSSTMPHKVNPIDFENSEGNLG 318 (458)
T ss_pred HhCCCCCCchhhHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccCCCCCCcCCCCCCcCcHHHHHHHHHHH
Confidence 99999866655789999999999999999999999999999999988887766678999999999999999999999777
Q ss_pred chHHHHHHHhhcCCCcccCCCCcchhhhhhhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 391 KANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 391 la~~~~g~~~~~l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
+++..+..+..+++.+++|||+++|+++|++++++.++..+++.+..++++|+||++
T Consensus 319 ~~~~~~~~~~~~~~~~~~eRD~~~s~~e~~~~~~~~~~~~al~~~~~~l~~L~v~~~ 375 (458)
T PLN02848 319 LANAELSHLSMKLPISRMQRDLTDSTVLRNMGVGLGHSLLAYKSTLRGIGKLQVNEA 375 (458)
T ss_pred HHHHHHHHHHhcCcchhhccccchhhhhccHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 666666666667678889999999999998899999999999999999999999986
No 3
>PRK09285 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=4.7e-78 Score=633.47 Aligned_cols=368 Identities=64% Similarity=1.027 Sum_probs=334.7
Q ss_pred cccccccccCccCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCC---CCCccHHHHHHHHHHHhcCCcc
Q 013198 76 FELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTE---VPSFSEEAKSYLQGLIDGFNMD 152 (448)
Q Consensus 76 ~~~~~~~~~sp~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~gi---Ip~~sa~a~~~l~~~~~~~~~~ 152 (448)
|+...+..+|||++||++.+++|+++|||++++++|++||.||+++|++ .|+ ||+.++++++.|.++..++..+
T Consensus 1 ~~~~~~~~~~p~~~ry~~~~~e~~~~~s~~~~~~~~l~vE~A~a~a~a~---~g~~~~ip~~~~~~~~~i~~~~~~~~~~ 77 (456)
T PRK09285 1 MELSALTALSPLDGRYASKTAALRPIFSEFGLIRYRVQVEVEWLIALAA---HPGIPEVPPFSAEANAFLRAIVENFSEE 77 (456)
T ss_pred CCCccccCCCCCccccCCCCHHHHHHhCHHHHHHHHHHHHHHHHHHHHh---cCCCCCCCCCCHHHHHHHHHHHHhhCcc
Confidence 3456789999999999976689999999999999999999999999994 777 9999999966666655456556
Q ss_pred ChHhhHHHHhhhCCcHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 013198 153 DALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKV-MFPVMDKLIKALCE 231 (448)
Q Consensus 153 d~~~i~~~e~~t~hDv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~-L~~~L~~l~~aL~~ 231 (448)
|+++++++|+.++|||+++|++|++++|..++++++++|||+|+|||||+||+++|++|+++. . +.+.|..++++|.+
T Consensus 78 d~~~i~~~e~~~~hdv~a~~~~l~~~~~~~~~~~~~~~~vH~G~Ts~Di~dTa~~L~lr~~l~-~~l~~~L~~l~~~L~~ 156 (456)
T PRK09285 78 DAARIKEIERTTNHDVKAVEYFLKEKLAGLPELEAVSEFIHFACTSEDINNLSHALMLKEARE-EVLLPALRELIDALKE 156 (456)
T ss_pred cHHHHHHHHHHhCCChHHHHHHHHHHhcccCcchhHHhHccCCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999842222357999999999999999999999999998 5 89999999999999
Q ss_pred HHHHcccceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHcccccccccccccccccccccCCCCChhHHHHHHHHh
Q 013198 232 IAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKS 311 (448)
Q Consensus 232 lA~~~~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~ 311 (448)
+|++|++++|+||||+|||+|||||+||++|+++|.|+++||.++.++|+++||+||+|++...+|+.||+.+.+.+++.
T Consensus 157 lA~~~~~t~m~grTH~Q~A~P~TfG~~~a~~~~~l~r~~~rL~~~~~~g~~~GAvGt~~a~~~~~~~~~~~~v~~~~~~~ 236 (456)
T PRK09285 157 LAHEYADVPMLSRTHGQPATPTTLGKEMANVAYRLERQLKQLEAVEILGKINGAVGNYNAHLAAYPEVDWHAFSREFVES 236 (456)
T ss_pred HHHHcCCCeeeceecCCCCeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHhhhcCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988999999999987664445777889999999999
Q ss_pred cCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceeeccCCCCcccCCCCCCcCchHHHHhhccccc
Q 013198 312 LGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGK 391 (448)
Q Consensus 312 LGl~~~~~~~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~l 391 (448)
|||..+++++|+.+||++++++++++.++++|+|||+|+++|++.|++.+.++++++|||||||||||+.+|++++++.+
T Consensus 237 LGL~~~~~~~~v~~rD~~~e~~~~la~~a~~L~kia~Di~ll~~~~e~~e~~~~~~~GSS~MPhKrNPv~~E~i~~~a~~ 316 (456)
T PRK09285 237 LGLTWNPYTTQIEPHDYIAELFDAVARFNTILIDLDRDVWGYISLGYFKQKTKAGEIGSSTMPHKVNPIDFENSEGNLGL 316 (456)
T ss_pred hCCCCCCCccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhccCCCCCCCCCCCCCCcCchHHHHHHHHHHH
Confidence 99999998888899999999999999999999999999999999877776678899999999999999999999998777
Q ss_pred hHHHHHHHhhcCCCcccCCCCcchhhhhhhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 392 ANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 392 a~~~~g~~~~~l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
++.+.+.+...++..+||||+++|.++|.+++++..+..+++.+..++++|+||++
T Consensus 317 ~~~~~~~~~~~~~~~~~eRD~~~~~~e~~~~~~~~~~~~~l~~~~~~l~~L~V~~~ 372 (456)
T PRK09285 317 ANALLEHLAAKLPISRWQRDLTDSTVLRNLGVAFGYSLIAYDSLLKGLGKLEVNEA 372 (456)
T ss_pred HHHHHHHHHhhccHHhhCCcCchhhhhcchHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 77777777777766669999999999998899999999999999999999999986
No 4
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=5.7e-73 Score=589.76 Aligned_cols=347 Identities=61% Similarity=1.013 Sum_probs=311.5
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCC---ccHHHHHHHHHHHhcCCccChHhhHHHHhhhCCcHhHHHHH
Q 013198 98 LAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPS---FSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYF 174 (448)
Q Consensus 98 ~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~---~sa~a~~~l~~~~~~~~~~d~~~i~~~e~~t~hDv~ave~~ 174 (448)
++++|||++++++|++||.||+++|+ ++|+||+ .+.++.+.|.+.+..++..|+++++++++.++|||+++|++
T Consensus 1 ~~~~~s~~~~~~~~l~vE~ala~a~a---~~g~Ip~~~~~~~~aa~~i~~~~~~~~~~d~~~~~~~~~~~~hdv~al~~~ 77 (425)
T cd01598 1 LRPYFSEYALIKYRVQVEVEWLIALS---NLEEIPEVPPLTKEELKFLRAIIENFSEEDALRIKEIEATTNHDVKAVEYF 77 (425)
T ss_pred CHHHhCHHHHHHHHHHHHHHHHHHHH---hcCCCCCCCCCCHHHHHHHHHHHhhcCccCHHHHHHHHHHHCCCcHHHHHH
Confidence 46899999999999999999999999 5899998 33344444555555544348999999999999999999999
Q ss_pred HHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCCCccccc
Q 013198 175 LKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTT 254 (448)
Q Consensus 175 L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~P~T 254 (448)
|+++||+.+.++++++|||+|+|||||+||+++|++|+++..++.+.|..++++|.++|++|+|++|+||||+|||+|||
T Consensus 78 l~~~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~lA~~~~dt~m~GrTH~Q~A~P~T 157 (425)
T cd01598 78 LKEKFETLGLLKKIKEFIHFACTSEDINNLAYALMIKEARNEVILPLLKEIIDSLKKLAKEYADVPMLSRTHGQPATPTT 157 (425)
T ss_pred HHHHhcccccchhhhhHhccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeecccCCccCeehh
Confidence 99999842111247899999999999999999999999995457899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHcccccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCCCcccchhHHHHHHH
Q 013198 255 LGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFY 334 (448)
Q Consensus 255 ~G~~la~~~~~L~R~~~rL~~~~~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~~i~~rD~~~el~~ 334 (448)
||+|+++|+++|.|+++||.++.++|+++|++||++++...+++.+|+.+++.+++.|||..++..||+.+||+++|+++
T Consensus 158 fG~~~a~w~~~L~r~~~RL~~~~~~g~~gGavGt~~~~~~~~~~~~~~~~~~~~a~~LgL~~~~~~~~v~~rD~~~e~~~ 237 (425)
T cd01598 158 LGKELAVFVYRLERQYKQLKQIEILGKFNGAVGNFNAHLVAYPDVDWRKFSEFFVTSLGLTWNPYTTQIEPHDYIAELFD 237 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhheeeCchhhhhhhhhccCcccHHHHHHHHHHHhCcCCCCcccchhccHHHHHHHH
Confidence 99999999999999999999999899999999998877655565667889999999999999888777899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHhhcCCCcccCCCCcc
Q 013198 335 AFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTD 414 (448)
Q Consensus 335 ~la~~~~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~~~l~~~~~eRDl~d 414 (448)
+++.++++|+|||+|+++|++.|++.+.++++++||||||||+||+.+|++++.+.+++.+.+.+...++..++|||+++
T Consensus 238 ~La~la~~L~kia~Di~ll~s~ge~~e~~~~~~~GSS~MPhKrNPv~~E~i~~~a~~a~~~~~~~~~~~~~~~~eRD~~~ 317 (425)
T cd01598 238 ALARINTILIDLCRDIWGYISLGYFKQKVKKGEVGSSTMPHKVNPIDFENAEGNLGLSNALLNHLSAKLPISRLQRDLTD 317 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcceeecCCCCCCCcCCCCCCcCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 99999999999999999999988888778889999999999999999999999888788888888888866669999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 415 STVLRNMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 415 s~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
|..+|.+++++..+..+++.+..++++|+||++
T Consensus 318 ~~~e~~~~~~~~~~~~al~~~~~ll~~L~v~~~ 350 (425)
T cd01598 318 STVLRNIGVAFGHSLIAYKSLLRGLDKLELNEA 350 (425)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 999998899999999999999999999999986
No 5
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=100.00 E-value=1.8e-72 Score=589.52 Aligned_cols=340 Identities=19% Similarity=0.197 Sum_probs=304.7
Q ss_pred cCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCC-CCCccHHHHHHHHHHHhcCCccChHhhHHHHhhhC
Q 013198 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTE-VPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTN 165 (448)
Q Consensus 87 ~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~gi-Ip~~sa~a~~~l~~~~~~~~~~d~~~i~~~e~~t~ 165 (448)
+||||+ +++|+++|||+++++.|+++|.|++++++ +.|+ ||+++++++ .+.+.+ .|+++++++|+.|+
T Consensus 1 ~~~ry~--~~~~~~~fs~~~~~~~~l~~e~ala~a~~---~~g~~ip~~~a~~i---~~~~~~---~d~~~i~~~e~~~~ 69 (436)
T cd03302 1 LASRYA--SKEMVYIFSPRKKFSTWRKLWLWLAEAEK---ELGLDISDEQIEEM---KANVEN---IDFEIAAAEEKKLR 69 (436)
T ss_pred CCCCcC--CHHHHHHcChHHHHHHHHHHHHHHHHhhH---HhCCCCCHHHHHHH---HHhhhc---CCHHHHHHHHHHhC
Confidence 689999 46999999999999999999999999999 5899 997555554 433322 48999999999999
Q ss_pred CcHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccc
Q 013198 166 HDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRT 245 (448)
Q Consensus 166 hDv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRT 245 (448)
|||++++++|+++||+ +++|||+|+||||+++|+++|++|+++. .+.+.|..++++|.++|++|+|++|+|||
T Consensus 70 hdv~a~~~~l~~~~~~------~~~~vH~G~TS~Di~dta~~L~lr~a~~-~l~~~L~~l~~~L~~~A~~~~dt~m~GrT 142 (436)
T cd03302 70 HDVMAHVHAFGLLCPA------AAGIIHLGATSCFVTDNTDLIQIRDALD-LILPKLAAVIDRLAEFALEYKDLPTLGFT 142 (436)
T ss_pred cCchHHHHHHHHHhHh------ccCeeeeCcCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCeeeccc
Confidence 9999999999999974 7999999999999999999999999998 59999999999999999999999999999
Q ss_pred cCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCC--hhHHHHHHHHhcCCCCC-CC
Q 013198 246 HGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVN--WPQITEDFVKSLGLSFN-PY 319 (448)
Q Consensus 246 H~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d--~~~~~~~la~~LGl~~~-~~ 319 (448)
|+|||+||||||||++|+++|.|+++||.+++ ..++++|++||+++++..+|+.. |+.+.+.+++.|||..+ +.
T Consensus 143 H~Q~A~P~TfG~~~a~~~~~L~r~~~RL~~~~~~~~~~~~~GavGt~a~~~~~~~~dr~~~~~v~~~~a~~LGl~~~~~~ 222 (436)
T cd03302 143 HYQPAQLTTVGKRACLWIQDLLMDLRNLERLRDDLRFRGVKGTTGTQASFLDLFEGDHDKVEALDELVTKKAGFKKVYPV 222 (436)
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcChhhhhHHHHhcCCchHHHHHHHHHHHHHHcCCCCCCCc
Confidence 99999999999999999999999999999986 45667899999988877776432 56788899999999987 66
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHH
Q 013198 320 VTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFL 399 (448)
Q Consensus 320 ~~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~ 399 (448)
.+|+.+||+++|++++++.++++|+|||+|+++|+++|++.+++..+++||||||||+||+.+|++++ +++.+.|.+
T Consensus 223 ~~~v~~rD~~~e~~~~la~~a~~L~riA~Dl~l~~s~~el~e~~~~g~~GSS~MPhKrNPv~~E~i~~---~a~~~~g~~ 299 (436)
T cd03302 223 TGQTYSRKVDIDVLNALSSLGATAHKIATDIRLLANLKEVEEPFEKGQIGSSAMPYKRNPMRSERCCS---LARHLMNLA 299 (436)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCceecccccCCCCCcccCCCccCcHHHHHHHH---HHHHHHhhH
Confidence 66889999999999999999999999999999999988888766678999999999999999999998 667888887
Q ss_pred hhcC---CCcccCCCCcchhhhhh-hhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 400 SMKL---PISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 400 ~~~l---~~~~~eRDl~ds~~~r~-l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
...+ ...+||||+.+|..+|+ +++++..+..++..+..++++|+||++
T Consensus 300 ~~~~~~~~~~~~Erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~ 351 (436)
T cd03302 300 SNAAQTASTQWFERTLDDSANRRIAIPEAFLAADAILITLQNISEGLVVYPK 351 (436)
T ss_pred HHHHHHhhccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHH
Confidence 6554 45568999999999995 778888888889999999999999986
No 6
>PRK07380 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=5.5e-72 Score=584.45 Aligned_cols=329 Identities=23% Similarity=0.323 Sum_probs=293.3
Q ss_pred cCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHHhhhCC
Q 013198 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNH 166 (448)
Q Consensus 87 ~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e~~t~h 166 (448)
++ ||+ +++|+++|||++++++|++||+||+++|+ ++|+||+++++++ .+.. ++ |+++++++|+.++|
T Consensus 2 ~~-~y~--~~~~~~~fs~~~~~~~~l~vE~ala~a~~---~~g~ip~~aa~~i---~~~~-~~---d~~~i~~~~~~~~h 68 (431)
T PRK07380 2 IE-RYT--LPEMGNIWTDTAKFQTWLDVEIAVCEAQA---ELGKIPQEAVEEI---KAKA-NF---DPQRILEIEAEVRH 68 (431)
T ss_pred cc-ccC--cHHHHHHcCHHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHH---Hhcc-CC---CHHHHHHHHHHhCC
Confidence 45 999 57999999999999999999999999999 5999997555554 4432 33 79999999999999
Q ss_pred cHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeecccc
Q 013198 167 DVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTH 246 (448)
Q Consensus 167 Dv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH 246 (448)
||+++++.|+++||+ .++|||+|+|||||+||+++|++|+++. .+.+.|.+++++|.++|++|+||+|+||||
T Consensus 69 ~v~a~v~~l~~~~g~------~~~~vH~G~Ts~Di~dTa~~L~lr~~l~-~l~~~l~~l~~~L~~lA~~~~~t~m~grTH 141 (431)
T PRK07380 69 DVIAFLTNVNEYVGD------AGRYIHLGMTSSDVLDTGLALQLVASLD-LLLEELEDLIQAIRYQAREHRNTVMIGRSH 141 (431)
T ss_pred ChHHHHHHHHHHHHH------hhccccCCCChhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCeeechhc
Confidence 999999999999974 7999999999999999999999999998 599999999999999999999999999999
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCCCcc
Q 013198 247 GQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQI 323 (448)
Q Consensus 247 ~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~~i 323 (448)
+|||+|||||+|+++|+++|.|+++||.++. ..++++||+||+++. | +++.+.+++.|||..++.+||+
T Consensus 142 ~Q~A~P~TfG~~~a~~~~~l~r~~~RL~~~~~~~~~~~l~GAvGt~~~~-------~-~~~~~~~a~~LGl~~~~~~~~v 213 (431)
T PRK07380 142 GIHAEPITFGFKLAGWLAETLRNRERLVRLREDIAVGQISGAVGTYANT-------D-PRVEAITCQKLGLKPDTASTQV 213 (431)
T ss_pred CccceechHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhcCcccC-------C-hhHHHHHHHHcCCCCCCCCCCc
Confidence 9999999999999999999999999999996 678889999996442 3 4577899999999988776788
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceee--ccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHhh
Q 013198 324 ETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQ--VTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM 401 (448)
Q Consensus 324 ~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s~G~~~~--~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~~ 401 (448)
.+||++++++++++.++++|+|||+|+++|+++|+.++ .+..+++||||||||+||+.+|++++ +++.+.|.++.
T Consensus 214 ~~rd~~~e~~~~la~~a~~L~kia~Di~~l~~~~~~el~e~~~~g~~GSS~MPhKrNP~~~E~i~~---~a~~~~g~~~~ 290 (431)
T PRK07380 214 ISRDRHAEYVQTLALVGASLERFATEIRNLQRTDVLEVEEYFAKGQKGSSAMPHKRNPIRSERLSG---LARVLRSYAVA 290 (431)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCceeecccCCCCCCCCcCCCCCCCCHHHHHHHH---HHHHHHHHHHH
Confidence 99999999999999999999999999999988666655 44567799999999999999999998 56677777654
Q ss_pred ---cCCCcccCCCCcchhhhh-hhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 402 ---KLPISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 402 ---~l~~~~~eRDl~ds~~~r-~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
.++.. ||||+++|+.+| .+++++..+..++..+..++++|+||++
T Consensus 291 ~~~~~~~~-~eRD~~~~~~e~~~l~~~~~~~~~~l~~~~~~l~~L~v~~~ 339 (431)
T PRK07380 291 ALENVALW-HERDISHSSVERVMLPDCSILLHFMLREMTDLVKNLLVYPE 339 (431)
T ss_pred HHHhchhh-hccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 45544 899999999998 6778888899999999999999999986
No 7
>PRK07492 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=1.4e-71 Score=582.05 Aligned_cols=333 Identities=24% Similarity=0.283 Sum_probs=295.6
Q ss_pred cCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHHhhhCC
Q 013198 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNH 166 (448)
Q Consensus 87 ~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e~~t~h 166 (448)
++.||+ +++|+++|||+++++.|++||.|++++|+ ++|+||++++++| .+.+.... .|+++++++|+.++|
T Consensus 1 ~~~~y~--~~~~~~i~s~~~~~~~~l~vE~ala~a~~---~~g~ip~~aa~~i---~~~~~~~~-~d~~~~~~~~~~~~h 71 (435)
T PRK07492 1 MIPRYS--RPEMVAIWEPETKFRIWFEIEAHACEAQA---ELGVIPKEAAETI---WEKGKDAE-FDVARIDEIEAVTKH 71 (435)
T ss_pred CCcccC--cHHHHHHcCHHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHH---HHhCcccC-CCHHHHHHHHHHhCC
Confidence 467999 57999999999999999999999999999 5999997666554 43322212 489999999999999
Q ss_pred cHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeecccc
Q 013198 167 DVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTH 246 (448)
Q Consensus 167 Dv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH 246 (448)
||+++|++|+++||+ .++|||+|+|||||+||+++|++|+++.. +.+.|..++++|.++|++|+|++|+||||
T Consensus 72 ~v~a~~~~L~~~~g~------~~~~vH~G~Ts~Di~dTa~~L~lr~~~~~-l~~~l~~l~~~L~~~A~~~~~t~m~grTH 144 (435)
T PRK07492 72 DVIAFLTHLAEFVGP------DARFVHQGMTSSDVLDTCLNVQLVRAADL-LLADLDRVLAALKKRAFEHKDTPTIGRSH 144 (435)
T ss_pred ChHHHHHHHHHHhhH------hhhhhcCCCChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCEEeeccC
Confidence 999999999999975 68999999999999999999999999994 99999999999999999999999999999
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCCCcc
Q 013198 247 GQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQI 323 (448)
Q Consensus 247 ~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~~i 323 (448)
+|||+|||||+||++|+++|.|+++||.++. ..+++|||+||+.. +| +.+.+++++.|||+.++.+||+
T Consensus 145 ~Q~A~P~TfG~~~a~~~~~l~r~~~rL~~~~~~~~~~~lgGAvGT~~~-------~~-~~~~~~~a~~LGl~~~~~~~~v 216 (435)
T PRK07492 145 GIHAEPTTFGLKLARFYAEFARNRERLVAAREEIATCAISGAVGTFAN-------ID-PRVEEHVAKKLGLKPEPVSTQV 216 (435)
T ss_pred CccceehhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCcc-------CC-hHHHHHHHHHhCCCCCCccccc
Confidence 9999999999999999999999999999996 67889999999543 23 4678999999999998887788
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHh-
Q 013198 324 ETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLS- 400 (448)
Q Consensus 324 ~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~- 400 (448)
.+||++++++++++.++++|+|||+|+++|++ +|++.+.+.++++|||+||||+||+.+|++++ +++.+.|.+.
T Consensus 217 ~~RD~~~e~~~~la~~~~~L~ria~Di~~l~~~e~~El~e~~~~g~~GSS~MPhKrNP~~~E~i~~---~a~~~~~~~~~ 293 (435)
T PRK07492 217 IPRDRHAMFFATLGVIASSIERLAIEIRHLQRTEVLEAEEFFSPGQKGSSAMPHKRNPVLTENLTG---LARLVRSYVVP 293 (435)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccCCCCCCCCCCCCCCCcHHHHHHHH---HHHHHHHHHHH
Confidence 99999999999999999999999999999876 66666666678899999999999999999999 4556666543
Q ss_pred --hcCCCcccCCCCcchhhhh-hhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 401 --MKLPISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 401 --~~l~~~~~eRDl~ds~~~r-~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
..++.. ||||+++|+.+| .+++++..+..++..+..++++|+||++
T Consensus 294 ~~~~~~~~-~eRD~~~~~~e~~~lp~~~~~~~~~l~~~~~~l~~L~v~~~ 342 (435)
T PRK07492 294 AMENVALW-HERDISHSSVERMIGPDATITLDFALNRLAGVIEKLVVYPE 342 (435)
T ss_pred HHHhcchh-hccCChHHHHhhhHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 455665 899999999998 5578888899999999999999999986
No 8
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=100.00 E-value=9.7e-72 Score=586.28 Aligned_cols=342 Identities=26% Similarity=0.312 Sum_probs=299.6
Q ss_pred cccCccCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHH
Q 013198 82 TALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIE 161 (448)
Q Consensus 82 ~~~sp~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e 161 (448)
|+|+|+++||+ +++|+++|||++++++|++||+||+++|+ +.|+||++.+++ |.+.+.. ...|.+.+.+.+
T Consensus 1 ~~~~~~~~~~~--~~~~~~~~s~~~~~~~~l~ve~A~a~~l~---~~Giip~~~a~~---I~~~l~~-~~i~~~~~~~~~ 71 (449)
T PRK08540 1 MAIHPIDYRYG--TPEMKRVWSEENKLQKMLDVEAALARAEA---ELGLIPEEAAEE---INRKAST-KYVKLERVKEIE 71 (449)
T ss_pred CCcCCcCcccC--CHHHHHHcChHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHH---HHHhccc-ccCCHHHHHHHH
Confidence 57999999999 57999999999999999999999999999 589999754444 4433322 103677777888
Q ss_pred hhhCCcHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccee
Q 013198 162 RVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISM 241 (448)
Q Consensus 162 ~~t~hDv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m 241 (448)
..++|||+++|++|++++++ +.++|||+|+|||||++|+++|++|+++.. +.+.|..++++|.++|++|++++|
T Consensus 72 ~~~~~~v~~~e~~L~~~~~~-----~~~~~vH~g~S~nDi~~Ta~~L~lr~~l~~-l~~~L~~l~~~L~~~A~~~~~~~m 145 (449)
T PRK08540 72 AEIHHDIMAVVKALSEVCEG-----DAGEYVHFGATSNDIIDTATALQLKDSLEI-LEEKLKKLRGVLLKKAEEHKNTVC 145 (449)
T ss_pred HHhCCCcHHHHHHHHHHhhh-----hhhcceecCccHhhHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCch
Confidence 89999999999999999963 479999999999999999999999999995 999999999999999999999999
Q ss_pred eccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCC
Q 013198 242 LSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNP 318 (448)
Q Consensus 242 ~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~ 318 (448)
+||||+||||||||||||++|++.|.|+++||.++. ..+++||||||.+++ ++++|+ +.+++++.|||+.++
T Consensus 146 ~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgavGt~~a~----~~~~~~-i~~~~a~~LGl~~~~ 220 (449)
T PRK08540 146 IGRTHGQHAVPTTYGMRFAIWASEIQRHLERLEQLKPRVCVGQMTGAVGTQAAF----GEKGIE-IQKRVMEILGLKPVL 220 (449)
T ss_pred hhhcCCCcCeehhHHHHHHHHHHHHHHHHHHHHHHHHhhheccccccccchhhC----CCccHH-HHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999999986 678889999997654 444544 778999999999987
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHH
Q 013198 319 YVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDL 396 (448)
Q Consensus 319 ~~~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~ 396 (448)
.++++++||++++++++++.++++|+|||+|+++|++ +|++...++++++||||||||+||+.+|++++ +++.+.
T Consensus 221 ~~~~~~~rd~~~e~~~~l~~~a~~l~kia~Dl~l~s~~e~gei~e~~~~~~~GSSiMP~K~NP~~~E~i~~---~a~~~~ 297 (449)
T PRK08540 221 ISNQVIQRDRHAEFMMFLANIATTLDKIGLEIRNLQRTEIGEVEEEFGKKQVGSSTMPHKRNPITSEQICG---LARVVR 297 (449)
T ss_pred CcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcCCCCCCcCcHHHHHHHH---HHHHHH
Confidence 7778899999999999999999999999999999987 66665556788999999999999999999998 455666
Q ss_pred HHHhh---cCCCcccCCCCcchhhhhh-hhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 397 SFLSM---KLPISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 397 g~~~~---~l~~~~~eRDl~ds~~~r~-l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
|.+.. .++.. |+||+++|+++|. +++++..+..++..+..+|++|+||++
T Consensus 298 g~~~~~~~~~~~~-~~rd~~~~~~e~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~ 351 (449)
T PRK08540 298 SNVEPALLNNPLW-DERDLTNSSCERIIFPESCVLTDHILKLMIKVLEGLRFNPE 351 (449)
T ss_pred HHHHHHHhcchhh-hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 66643 44555 8999999999985 445888888899999999999999986
No 9
>PRK08470 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=2.2e-71 Score=582.02 Aligned_cols=332 Identities=21% Similarity=0.263 Sum_probs=293.4
Q ss_pred cCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHHhhhCC
Q 013198 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNH 166 (448)
Q Consensus 87 ~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e~~t~h 166 (448)
++ ||+ +++|+++|||++++++|++||+||+++|+ ++|+||++++++ |.+.+ . .|+++++++++.++|
T Consensus 2 ~~-~y~--~~~~~~i~s~~~~~~~~l~ve~A~a~al~---~~G~Ip~~~a~~---I~~~~---~-~d~~~~~~~~~~~~~ 68 (442)
T PRK08470 2 VE-RYA--REEMKKKWTMQAKYDAWLEVEKAAVKAWN---KLGLIPDSDCEK---ICKNA---K-FDIARIDEIEKTTKH 68 (442)
T ss_pred Cc-ccC--cHHHHHHcCHHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHH---HHHhc---c-cchHHHHHHHHccCC
Confidence 45 999 57999999999999999999999999999 599999755554 44332 2 367888899999999
Q ss_pred cHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeecccc
Q 013198 167 DVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTH 246 (448)
Q Consensus 167 Dv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH 246 (448)
||++++++|+++||+ .++|||+|+|||||+||+++|++|+++. .+.+.|..++++|.++|++|++|+|+||||
T Consensus 69 dv~~~v~~L~e~~g~------~~~~vH~G~TsnDi~dTa~~L~lr~~l~-~l~~~l~~l~~~L~~lA~~~~~t~m~grTH 141 (442)
T PRK08470 69 DLIAFLTSVSESLGE------ESRFVHYGMTSSDCIDTAVALQMRDSLK-LIIEDVKNLMEAIKKRALEHKDTLMVGRSH 141 (442)
T ss_pred ChHHHHHHHHHHccc------cccceecCCChhchHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCeeecccC
Confidence 999999999999974 6899999999999999999999999999 599999999999999999999999999999
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCCCcc
Q 013198 247 GQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQI 323 (448)
Q Consensus 247 ~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~~i 323 (448)
+|||+|||||||+++|+++|.|+++||.+++ ..+++|||+||+++. | +.+++++++.|||+.++..||+
T Consensus 142 ~Q~A~P~TfG~~~a~~~~~l~r~~~RL~~~~~~~~~~~lgGAvGt~a~~----~----~~v~~~~a~~LGl~~~~~~~~v 213 (442)
T PRK08470 142 GIHGEPITFGLVLAIWYDEIKRHLKALEHTMEVISVGKISGAMGNFAHA----P----LELEELVCEELGLKPAPVSNQV 213 (442)
T ss_pred CCcCeehhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhcccccC----C----hHHHHHHHHHcCCCCCCCCCCc
Confidence 9999999999999999999999999999996 688899999997543 2 3578999999999988877788
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHhh
Q 013198 324 ETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM 401 (448)
Q Consensus 324 ~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~~ 401 (448)
.+||+++|++++++.++++|+|||+|+++|++ +|++.+.+.++++||||||||+||+.+|+++|.+..+......+..
T Consensus 214 ~~RD~~~e~~~~La~~a~~L~ria~Di~~l~~~E~~ev~e~~~~g~~GSS~MPhKrNPv~~E~i~~~a~~~~~~~~~~~~ 293 (442)
T PRK08470 214 IQRDRYARLASALALLASSCEKIAVAIRHLQRTEVYEAEEYFSKGQKGSSAMPHKRNPVLSENITGLCRVIRSFATPALE 293 (442)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceecccCCCCCCCcCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887 6666666667889999999999999999999955433333333334
Q ss_pred cCCCcccCCCCcchhhhhh-hhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 402 KLPISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 402 ~l~~~~~eRDl~ds~~~r~-l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
.++.. ||||+++|+.+|+ +++++..+..++..+..++++|+||++
T Consensus 294 ~~~~~-~eRD~~~~~~e~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~ 339 (442)
T PRK08470 294 NVALW-HERDISHSSVERFILPDAFITTDFMLHRLNNVIENLVVYPE 339 (442)
T ss_pred hchHh-hccCCchhHHHhhhHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 56666 9999999999985 799999999999999999999999986
No 10
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=1.9e-70 Score=566.66 Aligned_cols=327 Identities=26% Similarity=0.328 Sum_probs=288.7
Q ss_pred CCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHHhhhCCcHh
Q 013198 90 RYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVK 169 (448)
Q Consensus 90 ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e~~t~hDv~ 169 (448)
||+ +++|+++|||++++++|++||+||+++|+ +.|+||++++++ |.+.++ .+.+.+++.+..++||++
T Consensus 1 ~~~--~~~~~~~fs~~~~~~~~l~ve~A~a~~l~---~~Glip~~~a~~---I~~~l~----~~~~~~~~~~~~~~~dv~ 68 (387)
T cd01360 1 RYG--RPEMKKIWSEENKFRKWLEVEAAVCEAWA---KLGVIPAEAAEE---IRKKAK----FDVERVKEIEAETKHDVI 68 (387)
T ss_pred CCC--chHHHHHhCHHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHH---HHHHhh----cCHHHHHHHHHHhCCChH
Confidence 577 57999999999999999999999999999 589999755555 444433 256777788889999999
Q ss_pred HHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCCC
Q 013198 170 AVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQP 249 (448)
Q Consensus 170 ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~ 249 (448)
++|++|++++|+ .++|+|+|||||||++|+++|++|+++.. +.+.|.+++++|.++|++|++++||||||+||
T Consensus 69 ~~e~~L~~~~g~------~~~~lH~G~S~nDi~~ta~~L~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~ 141 (387)
T cd01360 69 AFVTAIAEYCGE------AGRYIHFGLTSSDVVDTALALQLREALDI-ILKDLKELLEVLKKKALEHKDTVMVGRTHGIH 141 (387)
T ss_pred HHHHHHHHHHHH------hhhheeCCCChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCeeehhhcCCc
Confidence 999999999984 78999999999999999999999999995 99999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCCCcccch
Q 013198 250 ASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETH 326 (448)
Q Consensus 250 A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~~i~~r 326 (448)
|||||||||+++|+++|.|+++||.++. ..+++|||+||.+++ | +.+++++++.|||+.++..+++++|
T Consensus 142 A~P~TfG~~l~~~~~~L~r~~~rL~~~~~~~~~~~lgga~Gt~~~~----~----~~~~~~~a~~LG~~~~~~~~~~~~r 213 (387)
T cd01360 142 AEPTTFGLKFALWYAEFKRHLERLKEARERILVGKISGAVGTYANL----G----PEVEERVAEKLGLKPEPISTQVIQR 213 (387)
T ss_pred ceeehHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHhhcCccC----C----HHHHHHHHHHcCCCCCCCCCcccCc
Confidence 9999999999999999999999999996 678889999996543 2 2468999999999998877888999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHh---h
Q 013198 327 DYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLS---M 401 (448)
Q Consensus 327 D~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~---~ 401 (448)
|+++|++++++.++++|+|||+|+++|++ +|++......+++||||||||+||+.+|+++++++ .+.|.+. .
T Consensus 214 D~~~e~~~~la~~~~~L~ria~Dl~~~s~~e~gel~e~~~~~~~GSS~MPqKrNP~~~E~i~~~a~---~~~g~~~~~~~ 290 (387)
T cd01360 214 DRHAEYLSTLALIASTLEKIATEIRHLQRTEVLEVEEPFSKGQKGSSAMPHKRNPILSENICGLAR---VIRSNVIPALE 290 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceecCCCCCCCCcCCCCCCCCCHHHHHHHHHHH---HHHHHHHHHHh
Confidence 99999999999999999999999999987 66665544457799999999999999999999544 5555553 4
Q ss_pred cCCCcccCCCCcchhhhh-hhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 402 KLPISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 402 ~l~~~~~eRDl~ds~~~r-~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
.+|.+ ||||+++|+.+| .+++++..+..++..+.+++++|+||++
T Consensus 291 ~~~~~-~~rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~ 336 (387)
T cd01360 291 NVALW-HERDISHSSVERVILPDATILLDYILRRMTRVLENLVVYPE 336 (387)
T ss_pred hhHHh-cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 45665 899999999887 5677899999999999999999999986
No 11
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=100.00 E-value=1.3e-70 Score=566.87 Aligned_cols=328 Identities=33% Similarity=0.429 Sum_probs=290.2
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHHhhhCCcHhHHHHHHHH
Q 013198 98 LAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQ 177 (448)
Q Consensus 98 ~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e~~t~hDv~ave~~L~e 177 (448)
|+.+|||++++++|++||+||+++|+ +.|+||++++++ |.+.+..+ ..|++.+++.+..++|||+++|++|++
T Consensus 1 ~~~~~s~~~~~~~~l~ve~A~a~~l~---~~giip~~~a~~---i~~~l~~~-~~d~~~~~~~~~~~~~~v~~~e~~L~~ 73 (381)
T cd01595 1 MRAIFSEENKLRTWLDVEAALAEAQA---ELGLIPKEAAEE---IRAAADVF-EIDAERIAEIEKETGHDVIAFVYALAE 73 (381)
T ss_pred ChhHhChHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHH---HHHhhhcc-cCCHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 57899999999999999999999999 589999755555 45444554 257888888998999999999999999
Q ss_pred HhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCCCccccchhh
Q 013198 178 KCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGK 257 (448)
Q Consensus 178 ~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~P~T~G~ 257 (448)
++|+ ++++|+|+|+|||||++|+++|++|+++.. +.+.|..++++|.++|++|+|++||||||+||||||||||
T Consensus 74 ~~g~-----~~~~~vH~g~S~nDi~~Ta~~l~lr~~l~~-l~~~l~~l~~~L~~~A~~~~dt~m~grTH~Q~A~P~T~G~ 147 (381)
T cd01595 74 KCGE-----DAGEYVHFGATSQDINDTALALQLRDALDI-ILPDLDALIDALAKLALEHKDTPMLGRTHGQHALPTTFGK 147 (381)
T ss_pred Hhhh-----HhhhHeecCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCChHHhhcCCCCCcchhHHH
Confidence 9985 479999999999999999999999999994 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCCCcccchhHHHHHHH
Q 013198 258 EISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFY 334 (448)
Q Consensus 258 ~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~~i~~rD~~~el~~ 334 (448)
|+++|+++|.|+++||.++. ..+++|||+||.++.+ . +|+.+++++++.|||..+++++++.+||+++|+++
T Consensus 148 ~~~~~~~~L~r~~~rL~~~~~~~~~~~lGga~G~g~~~~----~-~~~~~~~~~a~~LGl~~~~~~~~~~~rd~~~e~~~ 222 (381)
T cd01595 148 KFAVWAAELLRHLERLEEARERVLVGGISGAVGTHASLG----P-KGPEVEERVAEKLGLKVPPITTQIEPRDRIAELLS 222 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhcccHhhhHhhcC----C-cHHHHHHHHHHHcCCCCCCCCCCcccchHHHHHHH
Confidence 99999999999999999986 5677889999965442 1 56788999999999998888777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHh---hcCCCcccC
Q 013198 335 AFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLS---MKLPISRWQ 409 (448)
Q Consensus 335 ~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~---~~l~~~~~e 409 (448)
+++.++++|+|||+|+++|++ +|++.++..++++||||||||+||+.+|++++++. .+.|.+. ..++. +||
T Consensus 223 ~l~~~~~~l~ria~Dl~~~~s~e~gev~~~~~~~~~GSS~MPqK~NP~~~E~i~~~a~---~~~g~~~~~~~~~~~-~~e 298 (381)
T cd01595 223 ALALIAGTLEKIATDIRLLQRTEIGEVEEPFEKGQVGSSTMPHKRNPIDSENIEGLAR---LVRALAAPALENLVQ-WHE 298 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccceeccccCCCCCCccCCCcCCcHHHHHHHHHHH---HHHHHHHHHHHhhhH-hhc
Confidence 999999999999999999998 88888755578999999999999999999999544 5555553 34544 499
Q ss_pred CCCcchhhhh-hhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 410 RDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 410 RDl~ds~~~r-~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
||+++|+.+| .+++++..+..++..+..++++|+||++
T Consensus 299 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~ 337 (381)
T cd01595 299 RDLSDSSVERNILPDAFLLLDAALSRLQGLLEGLVVNPE 337 (381)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHH
Confidence 9999999988 5667888888889999999999999986
No 12
>PRK06390 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=6.5e-70 Score=572.54 Aligned_cols=342 Identities=23% Similarity=0.271 Sum_probs=296.0
Q ss_pred cccCccCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHH
Q 013198 82 TALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIE 161 (448)
Q Consensus 82 ~~~sp~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e 161 (448)
|-+||+++||++ ++|+.+|||++++++|++||+||+++|+ +.|+||+++++++ .+.+... ..|++.+.+.+
T Consensus 1 ~~~~~~~~~y~~--~~~~~i~s~~~~~~~~l~ve~A~a~al~---~~Giip~~~a~~I---~~~l~~~-~~d~~~~~~~~ 71 (451)
T PRK06390 1 MVVSPIEYRYGR--DQVKYIFDDENRLRYMLKVEAAIAKAEY---EYGIIPRDAFLDI---KNAVDSN-SVRLERVREIE 71 (451)
T ss_pred CCCCCcCcccCC--HHHHHHcCHHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHH---HHhcccc-cCCHHHHHHHH
Confidence 347999999994 6999999999999999999999999999 5899997655554 4433332 24778788889
Q ss_pred hhhCCcHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccee
Q 013198 162 RVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISM 241 (448)
Q Consensus 162 ~~t~hDv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m 241 (448)
.+++|||+++|++|+++||+ .++|+|+|+|||||++|+++|++|+++.. +.+.|..++++|.++|++|++++|
T Consensus 72 ~~~~~dv~~~~~~L~~~~g~------~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~-l~~~l~~l~~~L~~lA~~~~~t~m 144 (451)
T PRK06390 72 SEIKHDVMALVEALSEQCSA------GKNYVHFGVTSNDINDTATALQIHDFVSI-IKDDIKNLMETLIKLIDEYKDSPM 144 (451)
T ss_pred HHhCCCcHHHHHHHHHHhhh------hhhheecCccHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCch
Confidence 99999999999999999974 78999999999999999999999999995 999999999999999999999999
Q ss_pred eccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCC
Q 013198 242 LSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNP 318 (448)
Q Consensus 242 ~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~ 318 (448)
|||||+|||+||||||||++|+++|.|+++||.++. ..++++||+||.++.+ .+|+.+++++++.|||+.+.
T Consensus 145 ~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~r~~~~~~~gavGt~a~~g-----~~~~~~~~~~a~~LGl~~~~ 219 (451)
T PRK06390 145 MGRTHGQHASPITFGLKFAVYLDEMSRHLDRLTEMGDRAFAGKVLGPVGTGAALG-----KDALDIQNRVMEILGIYSEI 219 (451)
T ss_pred hhhhCCCcCeehhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhcChhhCC-----CcHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999999996 5778899999976553 23678899999999999976
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeecc-CCCCcccCCCCCCcCchHHHHhhccccchHHH
Q 013198 319 YVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVT-KAGEIGSSTMPHKVNPIDFENSEGNLGKANED 395 (448)
Q Consensus 319 ~~~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~-~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~ 395 (448)
..+++.+||++++++++++.++++|+|||+||++|++ +|++.+.. +++++||||||||+||+.+|++++. +..+
T Consensus 220 ~~~~~~~rD~~~e~~~~l~~la~~l~kia~Di~l~ss~e~g~v~E~~~~~~~~GSSiMP~KrNPv~~E~i~~~---a~~~ 296 (451)
T PRK06390 220 GSTQIVNRDRYIEYLSVINGISVTLEKIATEIRNLQRPEIDEVSEYFDEESQVGSSSMPSKVNPINSENVVSL---SRFI 296 (451)
T ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhcccccCCCCCccCCCCCCCcHHHHHHHHH---HHHH
Confidence 6678899999999999999999999999999999987 77776444 4589999999999999999999984 4344
Q ss_pred HHHHhh--cCCCcccCCCCcchhhhhh-hhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 396 LSFLSM--KLPISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 396 ~g~~~~--~l~~~~~eRDl~ds~~~r~-l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
.+.... .....+++||+++|+.+|+ +...+.....++..+..++++|+||++
T Consensus 297 ~~l~~~~~~~~~~~~erd~~~~~~e~~~~~~~~~~~~~~l~~~~~~l~~l~v~~~ 351 (451)
T PRK06390 297 RSLIIPEYEAGVTWHERDLTNSALERFTIPYASILIDYVLYNMNDVLSHLIIKED 351 (451)
T ss_pred HHhHHHHHHhhhHhhccCCcchHHHHhhHHHHHHHHHHHHHHHHHHHcCCEECHH
Confidence 433321 1233448999999999997 556656677788999999999999986
No 13
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=100.00 E-value=2.5e-69 Score=566.06 Aligned_cols=336 Identities=37% Similarity=0.495 Sum_probs=294.6
Q ss_pred cCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHHhhhCC
Q 013198 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNH 166 (448)
Q Consensus 87 ~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e~~t~h 166 (448)
+|+||+ +++|+++|||++++++|+++|+||+++|+ +.|+||++++++ |.+. ..++..|++.+.+.++.++|
T Consensus 1 ~~~~y~--~~~~~~ifs~~~~~~~~l~ve~A~a~~l~---~~giip~~~a~~---i~~~-~~~~~~d~~~l~~~~~~~~~ 71 (435)
T TIGR00928 1 LDERYG--TPEMRAIWSEENKFKTWLDVEVALLRALA---ELGVIPAEAVKE---IRAK-ANFTDVDLARIKEIEAVTRH 71 (435)
T ss_pred CCcccC--cHHHHHHhCHHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHH---HHhh-CCCCccCHHHHHHHHHHHCc
Confidence 588999 57999999999999999999999999999 589999755555 4443 34444578888888999999
Q ss_pred cHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeecccc
Q 013198 167 DVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTH 246 (448)
Q Consensus 167 Dv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH 246 (448)
||+++|++|++++|+ +++|||+|+||||+++|+++|++|+++.. +.+.|..++++|.++|++|++++|+||||
T Consensus 72 ~v~~~e~~l~~~~g~------~~~~vh~g~SsnD~~~Ta~~l~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~t~m~grTH 144 (435)
T TIGR00928 72 DVKAVVYALKEKCGA------EGEFIHFGATSNDIVDTALALLLRDALEI-ILPKLKQLIDRLKDLAVEYKDTVMLGRTH 144 (435)
T ss_pred ChHHHHHHHHHHhhh------hhhheeecccHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHccchHhHHhc
Confidence 999999999999974 78999999999999999999999999995 99999999999999999999999999999
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCCCcc
Q 013198 247 GQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQI 323 (448)
Q Consensus 247 ~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~~i 323 (448)
+|||+||||||||++|+++|.|+++||.++. ..+++|||+||....+ +++ +.+.+++++.|||+.++.++++
T Consensus 145 ~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lgGa~Gt~~~~~---~~~--~~~~~~~a~~LGl~~~~~~~~~ 219 (435)
T TIGR00928 145 GQHAEPTTLGKKFALWADEMKRQLERLLQAKERIKVGGISGAVGTHAAAY---PLV--EEVEERVTEFLGLKPVPISTQI 219 (435)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhHhhcc---ccH--HHHHHHHHHhcCCCCCCCCccc
Confidence 9999999999999999999999999999985 5677889999943322 222 4678999999999998766688
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceeeccC--CCCcccCCCCCCcCchHHHHhhccccchHHHHHHHhh
Q 013198 324 ETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTK--AGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM 401 (448)
Q Consensus 324 ~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s~G~~~~~~~--~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~~ 401 (448)
.+||++++++++++.++++|+|||+|+|+|++.|++++..+ .+++||||||||+||+.+|++++ ++..+.|..+.
T Consensus 220 ~~rD~~~e~~~~l~~la~~L~ria~Dl~l~s~~~~~el~~~~~~~~~GSS~MP~K~NP~~~E~i~~---~a~~~~g~~~~ 296 (435)
T TIGR00928 220 EPRDRHAELLDALALLATTLEKFAVDIRLLQRTEHFEVEEPFGKGQVGSSAMPHKRNPIDFENVCG---LARVIRSVLSP 296 (435)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceecccCCCCCCcCCCCcCcCcHHHHHHHH---HHHHHHHHHHH
Confidence 99999999999999999999999999999999666666333 35799999999999999999998 45566666543
Q ss_pred ---cCCCcccCCCCcchhhhhh-hhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 402 ---KLPISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 402 ---~l~~~~~eRDl~ds~~~r~-l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
.++. +||||+++|..+|+ ++.++..+..++..+.++|++|+||++
T Consensus 297 ~~~~~~~-~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~ 345 (435)
T TIGR00928 297 ALENVPL-WHERDLTDSSVERIILPDSFILADIMLKTTLKVVKKLVVNPE 345 (435)
T ss_pred HHHHhhH-HhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHH
Confidence 3444 49999999999986 889999999999999999999999986
No 14
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=4.4e-68 Score=542.20 Aligned_cols=335 Identities=20% Similarity=0.183 Sum_probs=290.9
Q ss_pred CccCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHHhhh
Q 013198 85 SPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVT 164 (448)
Q Consensus 85 sp~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e~~t 164 (448)
..++.||+ +++|+++|||++++++|++||+||+++++ ++|+||++.+++| .+.++.+. .|..++.+.+..+
T Consensus 9 ~~~~~~~~--~~~~~~~~s~~~~i~a~l~vE~A~a~a~~---~~G~Ip~~~a~~I---~~a~~~~~-~d~~~~~~~~~~~ 79 (351)
T PRK05975 9 PFLSGLFG--DDEIAALFSAEADIAAMLAFEAALAEAEA---EHGIIPAEAAERI---AAACETFE-PDLAALRHATARD 79 (351)
T ss_pred chhhccCC--CHHHHHHcCcHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHH---HHHhccCC-CCHHHHhhHHHhc
Confidence 34677998 57999999999999999999999999999 5999997655554 44444544 3677888889999
Q ss_pred CCcHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeecc
Q 013198 165 NHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSR 244 (448)
Q Consensus 165 ~hDv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gR 244 (448)
+|++.++|+.|++++|+ ++++|||+|+|||||+||+++|++|+++. .+.+.|..++++|.++|++|+|++|+||
T Consensus 80 g~~v~~~v~~l~~~~g~-----~~~~~vH~G~TsnDi~dTa~~L~lr~~l~-~l~~~L~~l~~~L~~lA~~~~~t~m~gr 153 (351)
T PRK05975 80 GVVVPALVRQLRAAVGE-----EAAAHVHFGATSQDVIDTSLMLRLKAASE-ILAARLGALIARLDALEATFGQNALMGH 153 (351)
T ss_pred CCcHHHHHHHHHHHhCc-----hhhCcccCCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCeeecc
Confidence 99999999999999974 57899999999999999999999999999 5999999999999999999999999999
Q ss_pred ccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCCC
Q 013198 245 THGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT 321 (448)
Q Consensus 245 TH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~ 321 (448)
||+|||+|||||||+++|+++|.|+++||.++. ..+++||||||+++++. .++.+++++++.|||..++ +
T Consensus 154 TH~Q~A~P~TfG~~~a~~~~~l~r~~~rL~~~~~~~~~~~lGGAvGt~~~~~~-----~~~~~~~~~a~~LGl~~~~-~- 226 (351)
T PRK05975 154 TRMQAAIPITVADRLASWRAPLLRHRDRLEALRADVFPLQFGGAAGTLEKLGG-----KAAAVRARLAKRLGLEDAP-Q- 226 (351)
T ss_pred cCCCcCeehhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccHhccCccCCC-----cHHHHHHHHHHHhCcCCCc-c-
Confidence 999999999999999999999999999999996 67889999999765532 2467899999999997654 4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHhh
Q 013198 322 QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM 401 (448)
Q Consensus 322 ~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~~ 401 (448)
++.+||++++++++++.++++|+|||+|+++|++.+ .++..+. ++||||||||+||+.+|++++.+..++.....+..
T Consensus 227 ~~~~rD~~~e~~~~la~la~~l~kiA~Di~ll~s~e-gev~~~~-~~GSS~MPhKrNPv~~E~i~~~ar~~~~~~~~~~~ 304 (351)
T PRK05975 227 WHSQRDFIADFAHLLSLVTGSLGKFGQDIALMAQAG-DEISLSG-GGGSSAMPHKQNPVAAETLVTLARFNATQVSGLHQ 304 (351)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcccCCC-CCccCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 458999999999999999999999999999998865 5554454 69999999999999999999955544444444445
Q ss_pred cCCCcccCCCCcchhhhh-hhhhhHHHHHHHHHHHHhcccccee
Q 013198 402 KLPISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQV 444 (448)
Q Consensus 402 ~l~~~~~eRDl~ds~~~r-~l~~~l~~~~~al~~~~~~l~~L~V 444 (448)
.++.. +|||...|..+| .+++++..+..++..+..++++|++
T Consensus 305 ~~~~~-~er~~~~~~~e~~~lp~~~~~~~~~l~~~~~ll~~l~~ 347 (351)
T PRK05975 305 ALVHE-QERSGAAWTLEWMILPQMVAATGAALRLALELAGNIRR 347 (351)
T ss_pred cccch-hccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence 56655 899999999998 7789999999999999999998875
No 15
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase. Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=100.00 E-value=3e-67 Score=533.93 Aligned_cols=328 Identities=20% Similarity=0.205 Sum_probs=283.0
Q ss_pred cCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHHhhhCC
Q 013198 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNH 166 (448)
Q Consensus 87 ~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e~~t~h 166 (448)
++++|+ +++|+++|||++++++|++||+||+++|+ +.|+||++.+++| .+.++++. .|+..+.+.+..++|
T Consensus 2 ~~~~~~--~~~~~~i~sd~~~i~~~~~ve~A~a~al~---~~Gii~~~~a~~I---~~a~~~~~-~d~~~~~~~~~~~~~ 72 (338)
T TIGR02426 2 LDGLFG--DPAALELFSDRAFLRAMLDFEAALARAQA---DAGLIPAEAAAAI---EAACAAAA-PDLEALAHAAATAGN 72 (338)
T ss_pred CccccC--CHHHHHHcCCHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHH---HHhhccCC-CCHHHHHhHHHhcCC
Confidence 467899 57999999999999999999999999999 5899997555554 44445543 367778888888999
Q ss_pred cHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeecccc
Q 013198 167 DVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTH 246 (448)
Q Consensus 167 Dv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH 246 (448)
++.++|++|++++|+ +.++|||+||||||+++|+++|++|+++.. +.+.+.+++++|.++|++|+|++||||||
T Consensus 73 ~~~~~~~~l~~~~g~-----~~g~~vH~G~S~nD~~~Ta~~L~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~~~m~grTH 146 (338)
T TIGR02426 73 PVIPLVKALRKAVAG-----EAARYVHRGATSQDVIDTSLMLQLRDALDL-LLADLGRLADALADLAARHRDTPMTGRTL 146 (338)
T ss_pred cHHHHHHHHHHHhCc-----cccCcccCCCChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCceecccC
Confidence 999999999999985 578999999999999999999999999995 99999999999999999999999999999
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCCCcc
Q 013198 247 GQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQI 323 (448)
Q Consensus 247 ~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~~i 323 (448)
+|||||+||||||++|+++|.|+++||.++. ..+++|||+||.++. +++++ .+++++++.|||+.++.+ ++
T Consensus 147 ~Q~A~P~T~G~~l~~~~~~l~r~~~rL~~~~~~~~~~~lGgavGtg~~~----~~~~~-~v~~~~a~~LGl~~~~~~-~~ 220 (338)
T TIGR02426 147 LQQAVPTTFGLKAAGWLAAVLRARDRLAALRTRALPLQFGGAAGTLAAL----GTRGG-AVAAALAARLGLPLPALP-WH 220 (338)
T ss_pred CCcCeehhHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCcchhccCCCc----cchHH-HHHHHHHHHhCcCCCCCc-ch
Confidence 9999999999999999999999999999986 578889999996543 33333 468999999999987655 46
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHhh
Q 013198 324 ETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM 401 (448)
Q Consensus 324 ~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~~ 401 (448)
.+||+++|++++++.++++|+|||+|+++|++ +|++.+ ++++||||||||+||+.+|++++ +++.+.|.+..
T Consensus 221 ~~rd~~~e~~~~l~~la~~l~ria~Dl~l~s~~e~gei~~---~~~~GSSiMPqK~NP~~~E~i~~---~a~~~~g~~~~ 294 (338)
T TIGR02426 221 TQRDRIAEFGSALALVAGALGKIAGDIALLSQTEVGEVFE---AGGGGSSAMPHKRNPVGAALLAA---AARRVPGLAAT 294 (338)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhh---CCCCCcccCCCCCCcHHHHHHHH---HHHHHHHHHHH
Confidence 89999999999999999999999999999987 555533 56799999999999999999998 45566666644
Q ss_pred ---cCCCcccCCCCcchhhhh-hhhhhHHHHHHHHHHHHhccccc
Q 013198 402 ---KLPISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKL 442 (448)
Q Consensus 402 ---~l~~~~~eRDl~ds~~~r-~l~~~l~~~~~al~~~~~~l~~L 442 (448)
.++.. +|||+..|..+| .+++.+..+..++..+..++++|
T Consensus 295 ~~~~~~~~-~Er~~~~~~~e~~~lp~~~~~~~~~l~~~~~~l~~l 338 (338)
T TIGR02426 295 LHAALPQE-HERSLGGWHAEWETLPELVRLTGGALRQAQVLAEGL 338 (338)
T ss_pred HHHhchHh-hccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33433 899999999998 66777777778888888887765
No 16
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=100.00 E-value=3.8e-67 Score=549.87 Aligned_cols=337 Identities=22% Similarity=0.240 Sum_probs=294.6
Q ss_pred cCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHHhhhCC
Q 013198 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNH 166 (448)
Q Consensus 87 ~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e~~t~h 166 (448)
+++||+ +++|+.+|||++++++|+.||.||+++|. +.|+||++.+++| .+.+... ..+++.+.+.+.+++|
T Consensus 2 ~~~~y~--~~~~~~~~s~~~~i~~~~~ve~A~a~~l~---~~Gii~~~~a~~I---~~al~~~-~~~~~~~~~~~~~~~~ 72 (437)
T cd01597 2 LGDLFG--TPAMREIFSDENRVQAMLDVEAALARAQA---ELGVIPKEAAAEI---AAAADVE-RLDLEALAEATARTGH 72 (437)
T ss_pred CccccC--CHHHHHHcCcHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHH---HHhcccc-CCCHHHHHHHHHHhCC
Confidence 678999 57999999999999999999999999999 5899997555554 4444333 2367778888889999
Q ss_pred cHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeecccc
Q 013198 167 DVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTH 246 (448)
Q Consensus 167 Dv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH 246 (448)
+|+++|++|++++|+ +.++|||+||||||+++|+++|++|+++.. +.+.|..|+++|.++|++|++++||||||
T Consensus 73 ~v~a~e~~l~e~~g~-----~~g~~lH~grSrnD~~~Ta~~l~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~~~m~grTH 146 (437)
T cd01597 73 PAIPLVKQLTAACGD-----AAGEYVHWGATTQDIIDTALVLQLRDALDL-LERDLDALLDALARLAATHRDTPMVGRTH 146 (437)
T ss_pred CcHHHHHHHHHHcCc-----cccCeeecCccHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCeeehhhc
Confidence 999999999999985 468999999999999999999999999995 99999999999999999999999999999
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCCCcc
Q 013198 247 GQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQI 323 (448)
Q Consensus 247 ~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~~i 323 (448)
+||||||||||||++|++.|.|+++||.++. ..+++|||+||.+++ | .+++.+++++++.|||+.++.+ ++
T Consensus 147 ~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGga~Gtg~~~----~-~~~~~~~~~~a~~LGf~~~~~~-~~ 220 (437)
T cd01597 147 LQHALPITFGLKVAVWLSELLRHRERLDELRPRVLVVQFGGAAGTLASL----G-DQGLAVQEALAAELGLGVPAIP-WH 220 (437)
T ss_pred CccceechHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccc----C-CcHHHHHHHHHHHcCCCCCCCc-cc
Confidence 9999999999999999999999999999986 677889999996543 4 2446788999999999998765 46
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHhh
Q 013198 324 ETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM 401 (448)
Q Consensus 324 ~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~~ 401 (448)
.+||++++++++++.++++|+|||+|+++|++ +|++.++..++++||||||||+||+.+|.+++ +++.+.|+++.
T Consensus 221 ~~rd~~~e~~~~l~~~a~~l~rla~Dl~l~s~~e~gel~~~~~~~~~GSSiMPqK~NP~~~E~i~~---~a~~~~g~~~~ 297 (437)
T cd01597 221 TARDRIAELASFLALLTGTLGKIARDVYLLMQTEIGEVAEPFAKGRGGSSTMPHKRNPVGCELIVA---LARRVPGLAAL 297 (437)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeecccCCCCCCCCCCCCCcCcHHHHHHHH---HHHHHHHHHHH
Confidence 89999999999999999999999999999987 66666533358999999999999999999998 56678887654
Q ss_pred cCC--CcccCCCCcchhhhh-hhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 402 KLP--ISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 402 ~l~--~~~~eRDl~ds~~~r-~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
.+. ..+||||++.|...| .+++++..+..++..+..++++|+||++
T Consensus 298 ~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~ 346 (437)
T cd01597 298 LLDAMVQEHERDAGAWHAEWIALPEIFLLASGALEQAEFLLSGLEVNED 346 (437)
T ss_pred HHHhchhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHH
Confidence 332 245999999998877 5668999999999999999999999986
No 17
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=7.4e-67 Score=549.61 Aligned_cols=339 Identities=20% Similarity=0.214 Sum_probs=296.8
Q ss_pred cCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHHhhhCC
Q 013198 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNH 166 (448)
Q Consensus 87 ~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e~~t~h 166 (448)
++++|+ +++|+.+|||++++++|++||.|++++++ ++|+||++.+++| .+.++. +..|++.+.+.+.+++|
T Consensus 8 ~~~~~~--~~~~~~i~s~~~~i~a~l~ve~A~A~a~~---~~G~ip~~~a~~I---~~a~~~-~~~d~~~~~~~~~~~~~ 78 (452)
T PRK09053 8 TDLYFG--SPAMRAIFSDRATVQRMLDFEAALARAEA---ACGVIPAAAVAPI---EAACDA-ERLDLDALAQAAALAGN 78 (452)
T ss_pred hhhhcC--CHHHHHHcCcHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHH---HHhccc-cCCCHHHHHHHHhhcCC
Confidence 455787 47999999999999999999999999999 5999997666665 433322 22479999999999999
Q ss_pred cHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeecccc
Q 013198 167 DVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTH 246 (448)
Q Consensus 167 Dv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH 246 (448)
++.++++.|++.++..+ ++.++|||+|+|||||++|+++|++|+++.. +.+.|..++++|.++|++|++++|+||||
T Consensus 79 ~~~~lv~~l~~~~~~~~--~~~~~~vH~G~SsnDi~~Ta~~l~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~t~~~GrTH 155 (452)
T PRK09053 79 LAIPLVKQLTAQVAARD--AEAARYVHWGATSQDIIDTGLVLQLRDALDL-LEPDLDRLCDALATLAARHRATPMVGRTW 155 (452)
T ss_pred chHHHHHHHHHHhcccC--cchhccccCCCChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCeeehhcc
Confidence 99999999999997311 1478999999999999999999999999995 99999999999999999999999999999
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCCCcc
Q 013198 247 GQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQI 323 (448)
Q Consensus 247 ~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~~i 323 (448)
+|||+||||||||++|+++|.|+++||.+++ ..+++||+|||++++ +++++ .+++++++.|||+.++.++ +
T Consensus 156 ~Q~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGgavGt~~~~----~~~~~-~v~~~~a~~LGl~~~~~~~-~ 229 (452)
T PRK09053 156 LQQALPVTLGLKFAGWLDALLRHRQRLAALRPRALVLQFGGAAGTLASL----GEQAL-PVAQALAAELQLALPALPW-H 229 (452)
T ss_pred CCcceechHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhccccc----ccchH-HHHHHHHHHcCCCCCCCCc-c
Confidence 9999999999999999999999999999996 678899999997765 33443 4789999999999877654 5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHhh
Q 013198 324 ETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM 401 (448)
Q Consensus 324 ~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~~ 401 (448)
.+||++++++++++.++++|+|||+||++|++ +|++.+....+++||||||||+||+.+|++++ +++.+.|+...
T Consensus 230 ~~rD~~~e~~~~la~la~~L~kia~Di~ll~~~e~gev~e~~~~~~~GSSiMP~KrNPv~~E~i~~---~a~~v~g~~~~ 306 (452)
T PRK09053 230 TQRDRIAEFASALGLLAGTLGKIARDVSLLMQTEVGEVFEPAAAGKGGSSTMPHKRNPVGCAAVLT---AATRAPGLVAT 306 (452)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhccccCCCCCcCCCCCCCCchHHHHHHH---HHHHHHHHHHH
Confidence 79999999999999999999999999999987 67775555568899999999999999999998 56677776644
Q ss_pred ---cCCCcccCCCCcchhhhh-hhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 402 ---KLPISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 402 ---~l~~~~~eRDl~ds~~~r-~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
.++. ++|||+..|..+| .+++++..+..++..+..+|++|+||++
T Consensus 307 ~~~~~~~-~~erd~~~~~~~~~~l~~~~~~~~~al~~~~~~l~~l~v~~e 355 (452)
T PRK09053 307 LFAAMPQ-EHERALGGWHAEWDTLPELACLAAGALAQMAQIVEGLEVDAA 355 (452)
T ss_pred HHHhChh-hhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHH
Confidence 3444 3899999999988 8899999999999999999999999986
No 18
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-64 Score=521.12 Aligned_cols=329 Identities=21% Similarity=0.261 Sum_probs=286.4
Q ss_pred ccCccCcCCCCCccchhhhcC-----hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHH-HHHHHHHhcCCccChHh
Q 013198 83 ALSPLDGRYWSKVKDLAPYMS-----EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAK-SYLQGLIDGFNMDDALE 156 (448)
Q Consensus 83 ~~sp~d~ry~~~~~~~~~~fs-----d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~-~~l~~~~~~~~~~d~~~ 156 (448)
...+|.|||..++++....|+ |..++++++.+.+||++||+ +.|+|+.+.++.| ..|.++.++...+.+..
T Consensus 2 ~~~lwggRf~~~~~~~~~~~~~Si~~D~~l~~~di~~s~AH~~mL~---~~Gii~~ee~~~I~~~L~~l~~e~~~g~~~~ 78 (459)
T COG0165 2 SNKLWGGRFSGGPDPLVKEFNASISFDKRLAEYDIAGSIAHAKMLA---KQGIITEEEAAKILEGLEELLEEIRAGKFEL 78 (459)
T ss_pred CCCCCCCCccCCCcHHHHHHhccchhHHHHHHHHHHHhHHHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 346899999987655444443 88999999999999999999 5899997666664 55666655544444554
Q ss_pred hHHHHhhhCCcH-hHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013198 157 VKNIERVTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKD 235 (448)
Q Consensus 157 i~~~e~~t~hDv-~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~ 235 (448)
..+.| || .++|++|.++||+ .|+++|+||||||+|.|+++||+|+.+.+ |...+..|+++|.++|++
T Consensus 79 ~~~~E-----DvH~aiE~~L~~~iG~------~ggkLhtgRSRNDQVatd~rL~lr~~~~~-l~~~i~~l~~aL~~~Ae~ 146 (459)
T COG0165 79 DPDDE-----DVHTAIEARLIERIGD------VGGKLHTGRSRNDQVATDLRLWLRDKLLE-LLELIRILQKALLDLAEE 146 (459)
T ss_pred CCccc-----cHHHHHHHHHHHHHhh------hhchhccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45566 99 9999999999995 89999999999999999999999999997 999999999999999999
Q ss_pred cccceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc------cccccccc-ccccccccccCCCCChhHHHHHH
Q 013198 236 NANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE------IMGKFAGA-VGNYNAHLSAYPDVNWPQITEDF 308 (448)
Q Consensus 236 ~~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~------~lg~lgGA-vGT~~a~~~~~~~~d~~~~~~~l 308 (448)
|.+++||||||+|+|||+|||||+.+|++.|.|+++||.++. |+|. || .|| .|| +| ++.+
T Consensus 147 ~~~~imPGyTHlQ~AQPvtf~H~llay~~~l~RD~~Rl~d~~~rvn~sPLGa--gAlaGt------~~~-iD----R~~t 213 (459)
T COG0165 147 HAETVMPGYTHLQRAQPVTFAHHLLAYAEMLARDIERLRDALKRVNVSPLGA--GALAGT------PFP-ID----RERT 213 (459)
T ss_pred ccCCccCCcccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc--cccCCC------CCC-CC----HHHH
Confidence 999999999999999999999999999999999999999874 5554 44 355 565 55 7888
Q ss_pred HHhcCCCC---CCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHH
Q 013198 309 VKSLGLSF---NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFE 383 (448)
Q Consensus 309 a~~LGl~~---~~~~~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E 383 (448)
|+.|||+. |+++ ++++||+++|+++++++++++|+|||+|+.+|+| |||+++ +++..+||||||||+||+.+|
T Consensus 214 A~lLGF~~~~~Nsld-avs~Rdf~le~l~~~s~~~~~LSRlaedlI~wss~EfgfI~l-~D~~sTGSSIMPQKKNPD~~E 291 (459)
T COG0165 214 AELLGFDAVTRNSLD-AVSDRDFILEFLSAAALIMVHLSRLAEDLILWSSPEFGFIEL-PDEFSTGSSIMPQKKNPDVLE 291 (459)
T ss_pred HHHcCCchhhcCchh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCceEeC-CcccccccccCCCCCCCcHHH
Confidence 99999987 6765 7899999999999999999999999999999987 899998 889999999999999999999
Q ss_pred HhhccccchHHHHHHHh------hcCCCcccCCCCcchhhhhhhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 384 NSEGNLGKANEDLSFLS------MKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 384 ~~~g~~~la~~~~g~~~------~~l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
.+||..+ .+.|.+. .++|.+ ||||+|+.+- .+++++.....++..+..++++|+||+|
T Consensus 292 LiRgk~g---rv~G~l~~ll~~~k~lPla-YnrDlQedke--~lfds~~t~~~~l~~~~~mv~~l~vn~e 355 (459)
T COG0165 292 LIRGKAG---RVIGALTGLLTIMKGLPLA-YNRDLQEDKE--PLFDSVDTLEDSLRVLAGMVSGLTVNKE 355 (459)
T ss_pred HHHHhhh---hhHHHHHHHHHHHhcCccc-ccHHHHhhhH--HHHHHHHHHHHHHHHHHHHHccCeeCHH
Confidence 9999665 7777664 357998 9999998876 4788999999999999999999999986
No 19
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=100.00 E-value=4.5e-63 Score=500.81 Aligned_cols=312 Identities=27% Similarity=0.291 Sum_probs=264.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhh-HHHHhhhCCcHhHHHHHHHHHhccCcccc
Q 013198 108 IYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEV-KNIERVTNHDVKAVEYFLKQKCQSQPEIA 186 (448)
Q Consensus 108 l~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i-~~~e~~t~hDv~ave~~L~e~~g~~~~~~ 186 (448)
+++|+.+|+||+++|+ +.|+||++.++++.+ .+..+. .|.+.. .+.+..++|+++++|++|+++||+
T Consensus 1 ~~~~l~ve~A~a~al~---~~Gli~~~~a~~I~~---~l~~~~-~~~~~~~~~~~~~~~~~~~~~e~~l~~~~g~----- 68 (325)
T cd01334 1 IRADLQVEKAHAKALA---ELGLLPKEAAEAILA---ALDEIL-EGIAADQVEQEGSGTHDVMAVEEVLAERAGE----- 68 (325)
T ss_pred CHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHH---HHHHHH-hCccccCeeeCCCCccHHHHHHHHHHHHhcc-----
Confidence 4789999999999999 589999866666533 222221 123333 245677888999999999999986
Q ss_pred cccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCCCccccchhhHHHHHHHHH
Q 013198 187 KVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRL 266 (448)
Q Consensus 187 ~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L 266 (448)
+.++|+|+|+||||+++|+++|++|+++.. +.+.|.+++++|.++|.+|++++||||||+|||+|||||||+++|+++|
T Consensus 69 ~~~~~lH~G~S~nDi~~ta~~l~lr~~~~~-l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l 147 (325)
T cd01334 69 LNGGYVHTGRSSNDIVDTALRLALRDALDI-LLPALKALIDALAAKAEEHKDTVMPGRTHLQDAQPTTLGHELAAWAAEL 147 (325)
T ss_pred ccCCCCccCCCCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCcEeecccccccCccccHHHHHHHHHHHH
Confidence 359999999999999999999999999995 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccc---cccccc-ccccccccccccCCCCChhHHHHHHHHhcCCCC-CCCCC-cccchhHHHHHHHHHHHHH
Q 013198 267 GRERQEISQVE---IMGKFA-GAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSF-NPYVT-QIETHDYMAKLFYAFVRFN 340 (448)
Q Consensus 267 ~R~~~rL~~~~---~lg~lg-GAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~-~~~~~-~i~~rD~~~el~~~la~~~ 340 (448)
.|+++||.++. ..+++| ||+|+.+.. ++.+++++++.|||.. ++..+ ++++||+++|++++++.++
T Consensus 148 ~r~~~rL~~~~~~~~~~~lG~gA~g~~~~~--------~~~~~~~~a~~LG~~~~~~~~~~a~~~rd~~~e~~~~l~~~~ 219 (325)
T cd01334 148 ERDLERLEEALKRLNVLPLGGGAVGTGANA--------PPIDRERVAELLGFFGPAPNSTQAVSDRDFLVELLSALALLA 219 (325)
T ss_pred HHHHHHHHHHHHHhhhcCCcHhHHhCcCCC--------CcchHHHHHHHhcCcCcCcCHHHHHhCcHHHHHHHHHHHHHH
Confidence 99999999986 567777 999885432 1346899999999944 33333 4899999999999999999
Q ss_pred HHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHhhc---CCCcccCCCCcch
Q 013198 341 NILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMK---LPISRWQRDLTDS 415 (448)
Q Consensus 341 ~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~~~---l~~~~~eRDl~ds 415 (448)
++|+|||+|+++|++ +|++.++. ..++||||||||+||+.+|++++ +++.+.|.+... +... ++||..+|
T Consensus 220 ~~l~ria~Dl~~~~~~e~gev~~~~-~~~~gSS~MP~KrNP~~~E~i~~---~a~~~~g~~~~~~~~~~~~-~~~~~~~~ 294 (325)
T cd01334 220 VSLSKIANDLRLLSSGEFGEVELPD-AKQPGSSIMPQKVNPVILELVRG---LAGRVIGNLAALLEALKGG-PLEDNVDS 294 (325)
T ss_pred HHHHHHHHHHHHHcCCCCCeEECCC-CCCCCcccCCCCCCCHHHHHHHH---HHHHHhhHHHHHHHHHhcC-chhhhccc
Confidence 999999999999987 88888743 34899999999999999999998 455666666543 3333 77899999
Q ss_pred hhhh-hhhhhHHHHHHHHHHHHhccccceeC
Q 013198 416 TVLR-NMGGGLGHSLLAYKSALQGIAKLQVL 445 (448)
Q Consensus 416 ~~~r-~l~~~l~~~~~al~~~~~~l~~L~Vn 445 (448)
..+| .+++++..+..++..+...+++|+||
T Consensus 295 ~~~~~~l~~~~~~~~~~l~~~~~~~~~l~v~ 325 (325)
T cd01334 295 PVEREALPDSFDLLDAALRLLTGVLEGLEVN 325 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcCEeC
Confidence 9988 78899999999999999999999997
No 20
>PRK04833 argininosuccinate lyase; Provisional
Probab=100.00 E-value=9.5e-62 Score=510.86 Aligned_cols=331 Identities=19% Similarity=0.237 Sum_probs=280.3
Q ss_pred CccCcCCCCCccchhhhcChhhHHHHHHH---HH--HHHHHHHhcCCCCCCCCCccHHHH-HHHHHHHhcCCccChHhhH
Q 013198 85 SPLDGRYWSKVKDLAPYMSEYGLIYFRVL---VE--IKWLLKLSKIPEVTEVPSFSEEAK-SYLQGLIDGFNMDDALEVK 158 (448)
Q Consensus 85 sp~d~ry~~~~~~~~~~fsd~~ll~~~l~---vE--~A~a~aLa~~~~~giIp~~sa~a~-~~l~~~~~~~~~~d~~~i~ 158 (448)
..|++||.+..+++...|++...++.++. +| +||+++|+ +.|+||++.+++| +.+.++.++.. .|+..+.
T Consensus 2 ~~~~~r~~~~~~~~~~~~~~~~~~d~~l~~~~i~~~~Aha~~l~---e~Gii~~~~a~~I~~al~~i~~~~~-~~~~~~~ 77 (455)
T PRK04833 2 ALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALV---TVGVLTADEQQQLEEALNELLEEVR-ANPQQIL 77 (455)
T ss_pred cCcccccCCcchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhhhh-cCCcccC
Confidence 35788999877799999999999999999 99 99999999 5999998777776 33443332321 1223332
Q ss_pred HHHhhhCCcH-hHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 013198 159 NIERVTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNA 237 (448)
Q Consensus 159 ~~e~~t~hDv-~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~ 237 (448)
+.+ ..|| ..+|++|.+++|+ .++|+|+||||||+++|+++|++|+++.. +.+.|..++++|.++|++|+
T Consensus 78 ~~~---~edv~~~ie~~L~~~~g~------~g~~lH~grSrnD~~~Ta~rl~~r~~l~~-l~~~l~~l~~~L~~~A~~~~ 147 (455)
T PRK04833 78 ASD---AEDIHSWVEGKLIDKVGD------LGKKLHTGRSRNDQVATDLKLWCKDQVAE-LLTALRQLQSALVETAENNQ 147 (455)
T ss_pred CCC---CchHHHHHHHHHHHHhcc------ccCcccCCCCchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcC
Confidence 222 3378 7888899999974 68899999999999999999999999995 99999999999999999999
Q ss_pred cceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---cccccccc--ccccccccccCCCCChhHHHHHHHHhc
Q 013198 238 NISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGA--VGNYNAHLSAYPDVNWPQITEDFVKSL 312 (448)
Q Consensus 238 dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGA--vGT~~a~~~~~~~~d~~~~~~~la~~L 312 (448)
+++||||||+|||||+||||||++|++.|.|+.+||.++. ..+++||+ +||. +| +| ++++++.|
T Consensus 148 ~tvm~GrTH~Q~AqP~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~plGgaA~~GT~------~~-~d----r~~~a~~L 216 (455)
T PRK04833 148 DAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGSGALAGTA------YE-ID----REQLAGWL 216 (455)
T ss_pred CCEEeccccCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCC------CC-CC----HHHHHHHh
Confidence 9999999999999999999999999999999999999985 45666666 5872 22 33 68899999
Q ss_pred CCCCCCCCC--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhcc
Q 013198 313 GLSFNPYVT--QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGN 388 (448)
Q Consensus 313 Gl~~~~~~~--~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~ 388 (448)
||+.+..++ ++.+||++++++++++.++++|+|||+|+++|++ +||+++ .++.++||||||||+||+.+|++++
T Consensus 217 Gf~~~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~ria~Dl~l~ss~e~g~~el-~~~~~~gSSiMPqKrNP~~~E~ir~- 294 (455)
T PRK04833 217 GFASATRNSLDSVSDRDHVLELLSDASISMVHLSRFAEDLIFFNSGEAGFVEL-SDRVTSGSSLMPQKKNPDALELIRG- 294 (455)
T ss_pred CCCCCCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceee-CCCCCCCcccCCCCCCChHHHHHHH-
Confidence 998864332 5889999999999999999999999999999987 899898 5788999999999999999999999
Q ss_pred ccchHHHHHHHh------hcCCCcccCCCCcchhhhhhhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 389 LGKANEDLSFLS------MKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 389 ~~la~~~~g~~~------~~l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
++..+.|++. ..+|.. |+||+++|+. .+++++..+..+++.+..+|++|+||++
T Consensus 295 --~a~~~~g~~~~~~~~~~~~~~~-~~rd~~~~~~--~l~~~~~~~~~~l~~~~~~l~~l~v~~~ 354 (455)
T PRK04833 295 --KCGRVQGALTGMLMTLKGLPLA-YNKDMQEDKE--GLFDALDTWLDCLHMAALVLDGIQVKRP 354 (455)
T ss_pred --HHHHHHhhHHHHHHHHhCChHH-HhhhhhhhHH--HHHHHHHHHHHHHHHHHHHHhhCeECHH
Confidence 5557777664 345775 9999999973 5788999999999999999999999986
No 21
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=100.00 E-value=1.9e-61 Score=509.07 Aligned_cols=330 Identities=19% Similarity=0.212 Sum_probs=277.1
Q ss_pred ccCcCCCCCccchhhhcC-----hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHH-HHHHHHHhcCCccChHhhHH
Q 013198 86 PLDGRYWSKVKDLAPYMS-----EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAK-SYLQGLIDGFNMDDALEVKN 159 (448)
Q Consensus 86 p~d~ry~~~~~~~~~~fs-----d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~-~~l~~~~~~~~~~d~~~i~~ 159 (448)
.|++||..++.++...|+ |..++++++.+++||++||. +.|+||++.+++| +.+.++......+++..
T Consensus 1 ~~~~r~~~~~~~~~~~~~~~~~~d~~l~~~~i~~~~Ah~~~L~---~~G~l~~~~a~~I~~al~~i~~~~~~~~~~~--- 74 (455)
T TIGR00838 1 LWGGRFTGGMDPRVAKFNASLSFDKELAEYDIEGSIAHTKMLK---KAGILTEEEAAKIIEGLNELKEEGREGPFIL--- 74 (455)
T ss_pred CCCccCCCCccHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHcCcccCCcCC---
Confidence 388999987778778888 99999999999999999999 5899998777665 44554443332222211
Q ss_pred HHhhhCCcH-hHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 013198 160 IERVTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNAN 238 (448)
Q Consensus 160 ~e~~t~hDv-~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~d 238 (448)
....+|+ +++|++|++++|. +.++|||+|+||||+++|+++|++|+++.. +.+.|..++++|.++|++|++
T Consensus 75 --~~~~~d~~~~ie~~l~e~~g~-----~~g~~iH~g~SrnD~~~Ta~~L~lr~~l~~-l~~~L~~l~~~L~~~A~~~~~ 146 (455)
T TIGR00838 75 --DPDDEDIHMAIERELIDRVGE-----DLGGKLHTGRSRNDQVATDLRLYLRDHVLE-LAEALLDLQDALIELAEKHVE 146 (455)
T ss_pred --CCCcCcHHHHHHHHHHHHhCC-----CccCCccCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccC
Confidence 1223699 9999999999984 468899999999999999999999999996 999999999999999999999
Q ss_pred ceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccc--cccccccccCCCCChhHHHHHHHHhcC
Q 013198 239 ISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAV--GNYNAHLSAYPDVNWPQITEDFVKSLG 313 (448)
Q Consensus 239 t~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAv--GT~~a~~~~~~~~d~~~~~~~la~~LG 313 (448)
++||||||+|||+||||||||++|+++|.|+++||.++. ..+++||+. || .+| . .++.+++.||
T Consensus 147 ~~m~grTH~Q~A~P~T~G~~~~~~~~~L~r~~~rL~~~~~~~~~~plGg~a~aGt------~~~-~----~r~~~a~~LG 215 (455)
T TIGR00838 147 TLMPGYTHLQRAQPITLAHHLLAYAEMLLRDYERLQDALKRVNVSPLGSGALAGT------GFP-I----DREYLAELLG 215 (455)
T ss_pred CEeecccccccceeccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhcccCC------CCC-C----CHHHHHHHcC
Confidence 999999999999999999999999999999999999986 456665553 33 233 2 3678999999
Q ss_pred CCCCCCC--CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccc
Q 013198 314 LSFNPYV--TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNL 389 (448)
Q Consensus 314 l~~~~~~--~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~ 389 (448)
|+.+..+ +++.+||++++++++++.++++|+|||+|+++|++ +|++++ ++.+++||||||||+||+.+|++++
T Consensus 216 ~~~~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~ria~Dl~l~ss~e~gei~l-p~~~~~GSSiMP~K~NP~~~E~i~~-- 292 (455)
T TIGR00838 216 FDAVTENSLDAVSDRDFILELLFVAALIMVHLSRFAEDLILWSTGEFGFVEL-PDEFSSGSSIMPQKKNPDVAELIRG-- 292 (455)
T ss_pred CCCCcCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeC-CCCCCCccCCCCCCcCChHHHHHHH--
Confidence 9985332 25899999999999999999999999999999987 888876 4566899999999999999999998
Q ss_pred cchHHHHHHHhh------cCCCcccCCCCcchhhhhhhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 390 GKANEDLSFLSM------KLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 390 ~la~~~~g~~~~------~l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
++..+.|.+.. ++|.+ ||||+++... .+++++..+..+++.+..+|++|+||++
T Consensus 293 -~a~~~~g~~~~~~~~~~~~~~~-~~rd~~~~~~--~l~~~~~~~~~al~~~~~~i~~l~v~~~ 352 (455)
T TIGR00838 293 -KTGRVQGNLTGMLMTLKALPLA-YNRDLQEDKE--PLFDALKTVELSLEMATGMLDTITVNKE 352 (455)
T ss_pred -HHHHHhhhHHHHHHHHhcCChH-hhhhhHhhHH--HHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 55577776643 44666 9999988533 5788999999999999999999999986
No 22
>PRK06705 argininosuccinate lyase; Provisional
Probab=100.00 E-value=4.8e-61 Score=510.32 Aligned_cols=332 Identities=16% Similarity=0.148 Sum_probs=274.5
Q ss_pred CccCcCCCCCccc-h--hh--hcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHH-HHHHHHhcCCccChHhhH
Q 013198 85 SPLDGRYWSKVKD-L--AP--YMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKS-YLQGLIDGFNMDDALEVK 158 (448)
Q Consensus 85 sp~d~ry~~~~~~-~--~~--~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~-~l~~~~~~~~~~d~~~i~ 158 (448)
..+++||.+++.+ + .. -|.++++++.|++||+||++||+ +.|+||++++++|. .+.++ .++ +.+.+.
T Consensus 10 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~ve~Aha~~l~---~~GiIp~e~a~~I~~al~~~-~~~---~~~~l~ 82 (502)
T PRK06705 10 KSEGADFPGKTYVDCVLQHVFNFQRNYLLKDMFQVHKAHIVMLT---EENLMKKEEAKFILHALKKV-EEI---PEEQLL 82 (502)
T ss_pred HHhcccCCCCcchhHHhhcccchhHHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHh-hhc---ccCccc
Confidence 4567788764322 1 12 34478899999999999999999 59999987777752 23222 222 444444
Q ss_pred HHHhhhCCcH-hHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 013198 159 NIERVTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNA 237 (448)
Q Consensus 159 ~~e~~t~hDv-~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~ 237 (448)
+..++||| ..+|.++++..|+ ++++|+|+|+|||||++|+++|++|+++.. +.+.|..++++|.++|++|+
T Consensus 83 --~~~~~edv~~~ie~~l~~~~G~-----~~g~~lH~GrSrnD~v~Ta~~L~lr~~l~~-l~~~l~~l~~~l~~~A~~~~ 154 (502)
T PRK06705 83 --YTEQHEDLFFLVEHLISQEAKS-----DFVSNMHIGRSRNDMGVTMYRMSLRRYVLR-LMEHHLLLQESILQLAADHK 154 (502)
T ss_pred --cCCCCCchHHHHHHHHHHhcCc-----hhhccccCCCCHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcC
Confidence 56788999 8889988888864 479999999999999999999999999995 99999999999999999999
Q ss_pred cceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCC
Q 013198 238 NISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGL 314 (448)
Q Consensus 238 dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl 314 (448)
||+||||||+|||||||||||+++|++.|.|+++||.+++ ..+++||++|+.++ +| ..++++++.|||
T Consensus 155 ~t~m~g~TH~Q~AqP~T~G~~l~~~~~~l~r~~~rL~~~~~r~~~~plGgaag~gt~----~~-----~~r~~~a~~LGf 225 (502)
T PRK06705 155 ETIMPAYTHTQPAQPTTFGHYTLAIYDTMQRDLERMKKTYKLLNQSPMGAAALSTTS----FP-----IKRERVADLLGF 225 (502)
T ss_pred CCEEecccCCccceehHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCchhhhhccCC----ch-----HHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999985 67888999988543 33 468999999999
Q ss_pred CCCC---CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccc
Q 013198 315 SFNP---YVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNL 389 (448)
Q Consensus 315 ~~~~---~~~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~ 389 (448)
+.+. ++ ++.+||+++|++++++.++.+|+|||+|+++|++ +|++++ .++..+||||||||+||+.+|++++
T Consensus 226 ~~~~~ns~~-a~~~rD~~~e~~~~la~~~~~L~Ria~Dl~~~ss~e~g~iel-~e~~~~gSSiMPqKrNP~~~E~ir~-- 301 (502)
T PRK06705 226 TNVIENSYD-AVAGADYLLEVSSLLMVMMTNTSRWIHDFLLLATKEYDGITV-ARPYVQISSIMPQKRNPVSIEHARA-- 301 (502)
T ss_pred CCCcCCHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeee-cCCCCCccCCCCCCcCCHHHHHHHH--
Confidence 9854 32 5689999999999999999999999999999987 898887 6667799999999999999999998
Q ss_pred cchHHHHHHHhhcC------CCcccCCCCcchhhhhhhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 390 GKANEDLSFLSMKL------PISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 390 ~la~~~~g~~~~~l------~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
+++.+.|++...+ |.. |++|+++. ....++.++..+..++..+..++++|+||++
T Consensus 302 -~a~~~~g~~~~~l~~~~~~~~~-~~~d~q~~-~~~~~~~~~~~~~~~l~~~~~~l~~l~v~~~ 362 (502)
T PRK06705 302 -ITSSALGEAFTVFQMIHNTPFG-DIVDTEDD-LQPYLYKGIEKAIRVFCIMNAVIRTMKVEED 362 (502)
T ss_pred -HHHHHHHHHHHHHHHhcCCcch-hhhhhHhh-hhhHHHHHHHHHHHHHHHHHHHHCcCEECHH
Confidence 5668888776533 332 66664333 2334677888888889999999999999986
No 23
>PLN02646 argininosuccinate lyase
Probab=100.00 E-value=9.2e-61 Score=505.04 Aligned_cols=330 Identities=18% Similarity=0.177 Sum_probs=274.6
Q ss_pred CccCcCCCCCccc-hhhhc----ChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHH-HHHHHHHhcCCccChHhhH
Q 013198 85 SPLDGRYWSKVKD-LAPYM----SEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAK-SYLQGLIDGFNMDDALEVK 158 (448)
Q Consensus 85 sp~d~ry~~~~~~-~~~~f----sd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~-~~l~~~~~~~~~~d~~~i~ 158 (448)
..|.+||...+++ +..+- -|..++++++.+.+||++||. +.|+||++.+++| +.|.++..+...+.+....
T Consensus 17 ~~w~~r~~~~~~~~~~~~~~s~~~d~~l~~~di~~~~Aha~~L~---~~Gii~~~~a~~I~~al~~i~~~~~~~~f~~~~ 93 (474)
T PLN02646 17 KLWGGRFEEGVTPAVEKFNESISFDKRLYKEDIMGSKAHASMLA---KQGIITDEDRDSILDGLDEIEKEIEAGKFEWRP 93 (474)
T ss_pred hhhcCCCCCCccHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHcCcccCCCcCCC
Confidence 5799999875555 44222 277899999999999999999 5899998777765 4455554333222332212
Q ss_pred HHHhhhCCcH-hHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 013198 159 NIERVTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNA 237 (448)
Q Consensus 159 ~~e~~t~hDv-~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~ 237 (448)
+. .|+ +++|++|.+++|+ .++++|+||||||+++|+++|++|+++.. +.+.|.+|+++|.++|++|+
T Consensus 94 ~~-----ed~h~~iE~~L~e~~G~------~g~~lH~grSrND~v~Ta~~L~lr~~l~~-l~~~L~~L~~~L~~~A~~~~ 161 (474)
T PLN02646 94 DR-----EDVHMNNEARLTELIGE------PAKKLHTARSRNDQVATDTRLWCRDAIDV-IRKRIKTLQVALVELAEKNV 161 (474)
T ss_pred CC-----CchHHHHHHHHHHHhch------hhCcccCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcC
Confidence 22 388 9999999999984 68899999999999999999999999995 99999999999999999999
Q ss_pred cceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccc-cc-cccccccccCCCCChhHHHHHHHHhc
Q 013198 238 NISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AV-GNYNAHLSAYPDVNWPQITEDFVKSL 312 (448)
Q Consensus 238 dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgG-Av-GT~~a~~~~~~~~d~~~~~~~la~~L 312 (448)
+++||||||+||||||||||||++|+++|.|+++||.++. ..+++|| |+ || .+| +| ++.+++.|
T Consensus 162 dtvmpGrTHlQ~AqPiT~G~~l~~~~~~l~rd~~RL~~~~~r~~~~pLGgga~aGt------~~~-id----r~~~A~~L 230 (474)
T PLN02646 162 DLVVPGYTHLQRAQPVLLSHWLLSHVEQLERDAGRLVDCRPRVNFCPLGSCALAGT------GLP-ID----RFMTAKDL 230 (474)
T ss_pred CCEEecccCCccceeecHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhcCC------CCC-CC----HHHHHHHh
Confidence 9999999999999999999999999999999999999985 3455554 32 43 233 33 78899999
Q ss_pred CCCCCCCCC--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhcc
Q 013198 313 GLSFNPYVT--QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGN 388 (448)
Q Consensus 313 Gl~~~~~~~--~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~ 388 (448)
||..+..++ ++.+||++++++++++.++++|+|||+|+++|++ +|++.+ ++++++||||||||+||+.+|.+++
T Consensus 231 Gf~~~~~n~~da~~~RD~~~e~~~~la~ia~~LsRia~Dl~l~ss~e~g~v~~-~d~~~~GSSiMPqKrNP~~~E~ir~- 308 (474)
T PLN02646 231 GFTAPMRNSIDAVSDRDFVLEFLFANSITAIHLSRLGEEWVLWASEEFGFVTP-SDAVSTGSSIMPQKKNPDPMELVRG- 308 (474)
T ss_pred CCCCCCCChHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeee-CCCCCCCcCCCCCCCCCHHHHHHHH-
Confidence 997754332 5899999999999999999999999999999987 899988 5889999999999999999999998
Q ss_pred ccchHHHHHHHh------hcCCCcccCCCCcchhhhhhhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 389 LGKANEDLSFLS------MKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 389 ~~la~~~~g~~~------~~l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
+++.+.|++. .++|.. |+||+++... .+++++..+..++..+..+|++|+||++
T Consensus 309 --~a~~v~G~~~~~~~~~~~~p~~-~~rD~q~~~~--~l~~~~~~~~~~l~~~~~~l~~l~v~~~ 368 (474)
T PLN02646 309 --KSARVIGDLVTVLALCKGLPTA-YNRDLQEDKE--PLFDSVDTVSDMLEVATEFAQNITFNPE 368 (474)
T ss_pred --HHHHHHhhhHHHHHHhcCCchH-hhcchhhHHH--HHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 5667777764 356775 9999976533 5788999999999999999999999986
No 24
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=100.00 E-value=2.5e-60 Score=498.16 Aligned_cols=315 Identities=19% Similarity=0.181 Sum_probs=266.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHH-HHHHHhcCCccChHhhHHHHhhhCCcHhHHHHHHHHHhcc
Q 013198 103 SEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSY-LQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQS 181 (448)
Q Consensus 103 sd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~-l~~~~~~~~~~d~~~i~~~e~~t~hDv~ave~~L~e~~g~ 181 (448)
.|++++++|+.||.||+++|+ +.|+||++.+++|.+ +.++.+++ +.+.++..+ .++|+++++|++|+++||+
T Consensus 4 ~d~~~~~~~~~ve~A~a~al~---~~Gii~~~~a~~I~~al~~~~~~~---~~~~~~~~~-~~~~~~~~~e~~l~~~~g~ 76 (435)
T cd01359 4 FDRRLFEEDIAGSIAHAVMLA---EQGILTEEEAAKILAGLAKIRAEI---EAGAFELDP-EDEDIHMAIERRLIERIGD 76 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhhc---ccCCccCCC-CCCcHHHHHHHHHHHHHHH
Confidence 478899999999999999999 589999877777633 33332233 334443333 5566669999999999974
Q ss_pred CcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCCCccccchhhHHHH
Q 013198 182 QPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISV 261 (448)
Q Consensus 182 ~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~P~T~G~~la~ 261 (448)
.++|||+|+||||+++|+++|++|+++.. +.+.|.+++++|.++|++|+|++|+||||+|||+|||||||+++
T Consensus 77 ------~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P~T~G~~~~~ 149 (435)
T cd01359 77 ------VGGKLHTGRSRNDQVATDLRLYLRDALLE-LLELLLDLQRALLDRAEEHADTIMPGYTHLQRAQPITFGHYLLA 149 (435)
T ss_pred ------HHhhhhccCCHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCEecCCCCCccceeccHHHHHHH
Confidence 68999999999999999999999999995 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCCC--cccchhHHHHHHHHH
Q 013198 262 FAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT--QIETHDYMAKLFYAF 336 (448)
Q Consensus 262 ~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~--~i~~rD~~~el~~~l 336 (448)
|++.|.|+++||.+++ ..+++||++|+..+ +| ..++.+++.|||+.+..++ ++.+||+++++++++
T Consensus 150 ~~~~l~r~~~rL~~~~~~~~~~~lGgaag~gt~----~~-----~~~~~~a~~LG~~~~~~~~~~a~~~rd~~~e~~~~l 220 (435)
T cd01359 150 YAEMLERDLERLADAYKRVNVSPLGAGALAGTT----FP-----IDRERTAELLGFDGPTENSLDAVSDRDFVLEFLSAA 220 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCcccccccCCC----CC-----CCHHHHHHHcCCCCCccCHHHHHhcchHHHHHHHHH
Confidence 9999999999999996 57788999987433 33 2478899999998755442 358899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHhhc------CCCccc
Q 013198 337 VRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMK------LPISRW 408 (448)
Q Consensus 337 a~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~~~------l~~~~~ 408 (448)
+.++++|+|||+|+++|++ +|++.+ ++...+||||||||+||+.+|++++ +++.+.|++... ++ .++
T Consensus 221 ~~~a~~l~ria~Dl~l~~~~e~gev~l-pe~~~~GSS~MP~KrNP~~~E~i~~---~a~~~~g~~~~~~~~~~~~~-~~~ 295 (435)
T cd01359 221 ALLMVHLSRLAEDLILWSTQEFGFVEL-PDAYSTGSSIMPQKKNPDVLELIRG---KAGRVIGALAGLLTTLKGLP-LAY 295 (435)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCeeeC-CCCCCCccccCCCCCCCcHHHHHHH---HHHHHhhHHhHHHHHhcCCC-Ccc
Confidence 9999999999999999987 788876 4556699999999999999999998 566777776432 23 348
Q ss_pred CCCCcchhhhhhhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 409 QRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 409 eRDl~ds~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
+||+++. ..++++++..+..+++.+..+|++|+||++
T Consensus 296 ~~d~~~~--~~~l~~~~~~~~~al~~~~~~l~~l~v~~~ 332 (435)
T cd01359 296 NKDLQED--KEPLFDAVDTLIASLRLLTGVISTLTVNPE 332 (435)
T ss_pred chhHHHh--hHHHHHHHHHHHHHHHHHHHHHhhCEECHH
Confidence 9999883 237889999999999999999999999986
No 25
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F ....
Probab=100.00 E-value=3.6e-61 Score=484.51 Aligned_cols=294 Identities=27% Similarity=0.422 Sum_probs=245.1
Q ss_pred cCCCCCccchhhhcChhhHHHHHHH-----HHHHHHHHHhcCCCCCCCCCccHHHH-HHHHHHHhcCCccChHhhHHHHh
Q 013198 89 GRYWSKVKDLAPYMSEYGLIYFRVL-----VEIKWLLKLSKIPEVTEVPSFSEEAK-SYLQGLIDGFNMDDALEVKNIER 162 (448)
Q Consensus 89 ~ry~~~~~~~~~~fsd~~ll~~~l~-----vE~A~a~aLa~~~~~giIp~~sa~a~-~~l~~~~~~~~~~d~~~i~~~e~ 162 (448)
|||..++++|..+||+++.+++|+. +|.+|+++|+ +.|+||++.+++| +.+.++..+++..|...++..+.
T Consensus 1 Gr~~~~~~~~~~~~s~~~~~~~~l~~~~~~~e~a~~~a~a---~~g~i~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~ 77 (312)
T PF00206_consen 1 GRYEVPTDEMYAIFSDRARFDFWLAEYDIRVEAALAKALA---EAGIIPKEAADAIVKALEEILEDGDLDDAFELDEIEE 77 (312)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH---HTTSSTHHHHHHHHHHHHHHHHHTCTHGHHHHCSCSS
T ss_pred CCcCCchHHHHHHHCHHHHhCCEeeccHHHHHHHHHHHHH---HhhcchHHHHHHHHHHHHHHHHhhccccccchhhhhc
Confidence 6888888999999999999999999 9999999999 5999998777776 33455555454433445555565
Q ss_pred hhCCcHhH-HHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccee
Q 013198 163 VTNHDVKA-VEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISM 241 (448)
Q Consensus 163 ~t~hDv~a-ve~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m 241 (448)
.++|++.+ ++..+.++++.. ++.++|||+|+|||||++|+++|++|+++...|.+.|.+++++|.++|++|++|+|
T Consensus 78 ~~~~~~~~~l~~~~~e~~~~~---~~~~~~vH~G~Ts~Di~~Ta~~l~lr~~~~~~l~~~l~~l~~~L~~~a~~~~~t~~ 154 (312)
T PF00206_consen 78 DIGHAVEANLNEVLGELLGEP---PEAGGWVHYGRTSNDIVDTALRLQLRDALLELLLERLKALIDALAELAEEHKDTPM 154 (312)
T ss_dssp SHHHHHHHHHHHHHHHHHTHS---SGGGGGTTTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSEE
T ss_pred cchhHHHHHHHHHhhhhhhcc---ccccccccCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCcee
Confidence 56666643 666666665522 25899999999999999999999999999435999999999999999999999999
Q ss_pred eccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcC-CCC-
Q 013198 242 LSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLG-LSF- 316 (448)
Q Consensus 242 ~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LG-l~~- 316 (448)
+||||+|||+|||||+||++|++.|.|+++||.++. ..+++|||+|+.++++ .+ +.+.+++++.|| |..
T Consensus 155 ~grTh~Q~A~P~T~G~~~a~~~~~l~r~~~rL~~~~~~~~~~~lgga~g~gt~~~-----~~-~~~~~~~~~~L~~~~~l 228 (312)
T PF00206_consen 155 PGRTHGQPAQPTTFGHKLAAWADELARDLERLEEARKRLNVSPLGGAVGAGTSLG-----ID-REFQERVAEELGEFTGL 228 (312)
T ss_dssp EEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEETTTTTTTSSHTT-----SH-HHHHHHHHHHHHHHHCS
T ss_pred ccccccccccceeHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhccCCCccccccc-----cC-cchhhhHHhhhhhhhhc
Confidence 999999999999999999999999999999999997 7888999988865543 23 234557777777 433
Q ss_pred ----CCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhcccc
Q 013198 317 ----NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLG 390 (448)
Q Consensus 317 ----~~~~~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~ 390 (448)
+++.+|+.+||++++++++++.++++|+|||+|+++|++ +|++++..+.+++|||+||||+||+.+|++++
T Consensus 229 ~~~~~~~~~~~~~rd~~~e~~~~l~~l~~~l~kia~Dl~~~~s~e~g~~~~~~~~~~~GSS~MP~K~NP~~~E~i~~--- 305 (312)
T PF00206_consen 229 GVPAPNWHDAVSSRDRLAELASALALLAGTLSKIAEDLRLLSSTEIGEVEEPFPEGQVGSSIMPHKRNPVILENIRG--- 305 (312)
T ss_dssp TEECSSHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGGGSSSCSSSSTTCEETHHHHHHHH---
T ss_pred ccchhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCccCCCCCCCHHHHHHHH---
Confidence 344457899999999999999999999999999999998 99999988889999999999999999999998
Q ss_pred chHHHHH
Q 013198 391 KANEDLS 397 (448)
Q Consensus 391 la~~~~g 397 (448)
+|+.++|
T Consensus 306 ~a~~v~G 312 (312)
T PF00206_consen 306 LARQVIG 312 (312)
T ss_dssp HHHHHHH
T ss_pred hhhcCcC
Confidence 6667765
No 26
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=100.00 E-value=5.8e-60 Score=514.11 Aligned_cols=334 Identities=18% Similarity=0.186 Sum_probs=278.0
Q ss_pred CccCcCCCCCccchhhhcChhhHHHHHHHHH-----HHHHHHHhcCCCCCCCCCccHHHHHH-HHHHHhcCCccChHhhH
Q 013198 85 SPLDGRYWSKVKDLAPYMSEYGLIYFRVLVE-----IKWLLKLSKIPEVTEVPSFSEEAKSY-LQGLIDGFNMDDALEVK 158 (448)
Q Consensus 85 sp~d~ry~~~~~~~~~~fsd~~ll~~~l~vE-----~A~a~aLa~~~~~giIp~~sa~a~~~-l~~~~~~~~~~d~~~i~ 158 (448)
..|++||.+++++.-.+|++...++.++.+| +||+++|+ +.|+||++++++|.+ +..+..+.. .|++.+.
T Consensus 2 ~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~e~i~~~~A~a~~l~---~~Giip~~~a~~I~~~l~~~~~~~~-~~~~~~~ 77 (614)
T PRK12308 2 ALWGGRFSQAADTRFKQFNDSLRFDYRLAEQDIVGSIAWSKALL---SVGVLSEEEQQKLELALNELKLEVM-EDPEQIL 77 (614)
T ss_pred cccccCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHHHHh-cCCCCCC
Confidence 3588999987778777999999999999999 99999999 599999877766532 322211110 1334444
Q ss_pred HHHhhhCCcHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 013198 159 NIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNAN 238 (448)
Q Consensus 159 ~~e~~t~hDv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~d 238 (448)
+.+.+++| ..+|++|++++|+ +++|+|+|+||||+++|+++|++|+++.. +.+.|..++++|.++|++|++
T Consensus 78 ~~~~ed~h--~~ie~~L~~~~g~------~~~~iH~g~S~nD~~~Ta~~L~~r~~~~~-l~~~l~~l~~~l~~~a~~~~~ 148 (614)
T PRK12308 78 LSDAEDIH--SWVEQQLIGKVGD------LGKKLHTGRSRNDQVATDLKLWCRQQGQQ-LLLALDQLQQQMVNVAERHQG 148 (614)
T ss_pred CCccccHH--HHHHHHHHHHhcc------cccceecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCC
Confidence 45545444 5566999999974 79999999999999999999999999995 999999999999999999999
Q ss_pred ceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCC
Q 013198 239 ISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLS 315 (448)
Q Consensus 239 t~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~ 315 (448)
++||||||+|||||+|||||+++|+++|.|+++||.++. ..+++|| |++++. .+| ..++++++.|||.
T Consensus 149 t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~plGg--ga~agt--~~~-----~~r~~~a~~LG~~ 219 (614)
T PRK12308 149 TVLPGYTHLQRAQPVTFAHWCLAYVEMFERDYSRLEDALTRLDTCPLGS--GALAGT--AYP-----IDREALAHNLGFR 219 (614)
T ss_pred CEeecCcCCcccEEecHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchh--ccccCC--CCC-----CCHHHHHHHhCCC
Confidence 999999999999999999999999999999999999985 4556655 333221 233 3478899999998
Q ss_pred CCCCC--CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccccc
Q 013198 316 FNPYV--TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGK 391 (448)
Q Consensus 316 ~~~~~--~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~l 391 (448)
.+..+ .++.+||++++++++++.++++|+|||+|+++|++ +|++++ .++.++||||||||+||+.+|++++ +
T Consensus 220 ~~~~n~~da~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~ss~e~g~~el-~~~~~~gSSiMPqK~NP~~~E~i~~---~ 295 (614)
T PRK12308 220 RATRNSLDSVSDRDHVMELMSVASISMLHLSRLAEDLIFYNSGESGFIEL-ADTVTSGSSLMPQKKNPDALELIRG---K 295 (614)
T ss_pred CCcCCHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCEEe-CccCCCccccCcCccCCcHHHHHHH---H
Confidence 75433 25889999999999999999999999999999987 899998 5778899999999999999999998 5
Q ss_pred hHHHHHHHh------hcCCCcccCCCCcchhhhhhhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 392 ANEDLSFLS------MKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 392 a~~~~g~~~------~~l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
++.+.|++. ..+|.. ||||+++|. ..+++++..+..++..+..+|++|+||++
T Consensus 296 a~~~~g~~~~~~~~~~~~~~~-~~rd~~~~~--~~l~~~~~~~~~~l~~~~~~l~~l~v~~~ 354 (614)
T PRK12308 296 TGRVYGALAGMMMTVKALPLA-YNKDMQEDK--EGLFDALDTWNDCMEMAALCFDGIKVNGE 354 (614)
T ss_pred HHHHhhHHHHHHHHHcCCchh-hccchhhhH--HHHHHHHHHHHHHHHHHHHHhCcCEECHH
Confidence 557777664 345765 999999993 25788999999999999999999999975
No 27
>PRK00855 argininosuccinate lyase; Provisional
Probab=100.00 E-value=4.9e-59 Score=491.20 Aligned_cols=332 Identities=19% Similarity=0.201 Sum_probs=270.8
Q ss_pred CccCcCCCCCccc-hhh----hcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHH-HHHHHHHhcCCccChHhhH
Q 013198 85 SPLDGRYWSKVKD-LAP----YMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAK-SYLQGLIDGFNMDDALEVK 158 (448)
Q Consensus 85 sp~d~ry~~~~~~-~~~----~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~-~~l~~~~~~~~~~d~~~i~ 158 (448)
..|.+||..++.+ +.. +--|..++++++.+++||+.||. +.|+||++.+++| +.+.++......+.+....
T Consensus 5 ~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~Aha~~l~---~~G~l~~~~a~~i~~al~~i~~~~~~~~~~~~~ 81 (459)
T PRK00855 5 KLWGGRFSEGPDELVERFTASISFDKRLAEEDIAGSIAHARMLA---KQGILSEEEAEKILAGLDEILEEIEAGKFEFSP 81 (459)
T ss_pred cccccCCCcchHHHHHHcccCccchHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhhcccCCcccCC
Confidence 3566676654322 221 22267899999999999999999 5899998777665 3444443322111222111
Q ss_pred HHHhhhCCcH-hHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 013198 159 NIERVTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNA 237 (448)
Q Consensus 159 ~~e~~t~hDv-~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~ 237 (448)
.++|+ +++|++|.+++|+ .+++||+|+||||+++|+++|++|+++.. +.+.|.+++++|.++|++|+
T Consensus 82 -----~~~d~~~~ie~~l~~~~g~------~g~~iH~g~SrnD~~~Ta~~L~~r~~l~~-l~~~L~~l~~~L~~~A~~~~ 149 (459)
T PRK00855 82 -----ELEDIHMAIEARLTERIGD------VGGKLHTGRSRNDQVATDLRLYLRDEIDE-IAELLLELQKALLDLAEEHA 149 (459)
T ss_pred -----CCCcHHHHHHHHHHHHhcc------ccCcccCCCCHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcC
Confidence 34589 9999999999984 67899999999999999999999999996 99999999999999999999
Q ss_pred cceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCC
Q 013198 238 NISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGL 314 (448)
Q Consensus 238 dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl 314 (448)
+++||||||+|||||+|||||+++|++.|.|+++||.++. ..+++||++|+.. .+| ..++.+++.|||
T Consensus 150 ~t~m~GrTH~Q~A~P~T~G~~l~~~~~~L~r~~~rL~~~~~~~~~~plGgaag~gt----~~~-----~~r~~~a~~LG~ 220 (459)
T PRK00855 150 DTIMPGYTHLQRAQPVTFGHHLLAYAEMLARDLERLRDARKRVNRSPLGSAALAGT----TFP-----IDRERTAELLGF 220 (459)
T ss_pred CCEeecCcCCccceeecHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhcCC----CCC-----cCHHHHHHHcCC
Confidence 9999999999999999999999999999999999999986 5677888887532 233 237889999999
Q ss_pred CCCCCC--CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhcccc
Q 013198 315 SFNPYV--TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLG 390 (448)
Q Consensus 315 ~~~~~~--~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~ 390 (448)
..+..+ +++.+||++++++++++.++++|+|||+|+++|++ +|++++ ++..++||||||||+||+.+|++++
T Consensus 221 ~~~~~n~~~a~~~rd~~~e~~~~l~~la~~L~ria~Dl~l~ss~e~gei~~-p~~~~~gSSiMPqK~NP~~~E~i~~--- 296 (459)
T PRK00855 221 DGVTENSLDAVSDRDFALEFLSAASLLMVHLSRLAEELILWSSQEFGFVEL-PDAFSTGSSIMPQKKNPDVAELIRG--- 296 (459)
T ss_pred CCCCCCHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCeEeC-CCCCCCCcCCCCCCCCCHHHHHHHH---
Confidence 884332 26789999999999999999999999999999988 677776 3456799999999999999999998
Q ss_pred chHHHHHHHhh------cCCCcccCCCCcchhhhhhhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 391 KANEDLSFLSM------KLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 391 la~~~~g~~~~------~l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
++..+.|++.. .+|+. |+||+++... .+++++..+..+++.+..++++|+||++
T Consensus 297 ~a~~~~g~~~~~~~~~~~~~~~-~~rD~~~~~~--~l~~~~~~~~~al~~~~~~l~~l~v~~~ 356 (459)
T PRK00855 297 KTGRVYGNLTGLLTVMKGLPLA-YNRDLQEDKE--PLFDAVDTLKLSLEAMAGMLETLTVNKE 356 (459)
T ss_pred HHHHHHhhHHHHHHHhcCchHH-hhhhhhhhHH--HHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 55577777643 34555 9999998533 5788999999999999999999999986
No 28
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=100.00 E-value=9.5e-59 Score=489.20 Aligned_cols=328 Identities=21% Similarity=0.200 Sum_probs=258.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHH-HHHHHhc-CCccC-hHhhHHHHhhhC-----CcHhHHHHHH
Q 013198 104 EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSY-LQGLIDG-FNMDD-ALEVKNIERVTN-----HDVKAVEYFL 175 (448)
Q Consensus 104 d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~-l~~~~~~-~~~~d-~~~i~~~e~~t~-----hDv~ave~~L 175 (448)
|.+++++|++||+||+++|+ ++|+||++.+++|.. +..+.+. ++ +. +..+.+.+..++ |++.+. .+
T Consensus 41 ~~~~~~~~l~ve~A~a~al~---~~Giip~~~a~~I~~al~~i~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~i~~--~~ 114 (464)
T PRK00485 41 PRELIRALALLKKAAARVNA---ELGLLDAEKADAIVAAADEVIAGKHD-DHFPLDVWQTGSGTQSNMNVNEVIAN--RA 114 (464)
T ss_pred CHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhCccc-cCCCcchhhccccccccccHHHHHHH--HH
Confidence 67899999999999999999 589999877777633 3333222 21 11 222333333333 333222 33
Q ss_pred HHHhccCcc-c--ccccCccccCCChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcccceeeccccCCCcc
Q 013198 176 KQKCQSQPE-I--AKVLEFFHFACTSEDINNLAHALMLKEAI-NKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPAS 251 (448)
Q Consensus 176 ~e~~g~~~~-~--~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l-~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~ 251 (448)
.+..|+... . --.++|||+|+|||||++|+++|++|+++ .. +.+.|.+++++|.++|++|+|++||||||+||||
T Consensus 115 ~~~~g~~~~~~~~~h~~~~vh~G~SrnD~v~Ta~~L~lr~~l~~~-l~~~l~~l~~~L~~~A~~~~dt~m~GrTH~Q~A~ 193 (464)
T PRK00485 115 SELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAIVER-LLPALEHLRDTLAAKAEEFADIVKIGRTHLQDAT 193 (464)
T ss_pred HHhcCccccccCccCccccCCCCCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCeeeeeecCcCce
Confidence 344443100 0 00478888999999999999999999999 75 9999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHccc---ccccccc-cccccccccccCCCCChhHHHHHHHHhcCCCCCCCCC---ccc
Q 013198 252 PTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT---QIE 324 (448)
Q Consensus 252 P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgG-AvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~---~i~ 324 (448)
||||||||++|+++|.|+++||.+++ ..+++|| |+||..... ++++ +.+.+++++.|||+.++..| ++.
T Consensus 194 PiTfG~~~~~~~~~l~R~~~RL~~~~~r~~~~pLGg~AvGT~~~~~---~~~~-~~v~~~~A~~LGl~~~~~~n~~da~~ 269 (464)
T PRK00485 194 PLTLGQEFSGYAAQLEHGIERIEAALPHLYELALGGTAVGTGLNAH---PGFA-ERVAEELAELTGLPFVTAPNKFEALA 269 (464)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCccCC---hhHH-HHHHHHHHHHhCCCCccCcCHHHHHh
Confidence 99999999999999999999999986 5677776 899943321 1111 46778999999999655544 458
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHH
Q 013198 325 THDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFL 399 (448)
Q Consensus 325 ~rD~~~el~~~la~~~~~L~kia~Dl~~~~s-----~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~ 399 (448)
+||+++|++++++.++++|+|||+|+++|+| +|++.+ |.+++||||||||+||+.+|++++ +++.+.|.+
T Consensus 270 ~rD~~~e~~~~la~la~~L~ria~Dl~l~ss~~~~e~gev~l--p~~~~GSSiMPqKrNP~~~E~ir~---~a~~v~g~~ 344 (464)
T PRK00485 270 AHDALVEASGALKTLAVSLMKIANDIRWLASGPRCGLGEISL--PENEPGSSIMPGKVNPTQCEALTM---VCAQVMGND 344 (464)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCceEEc--CCCCCCCCCCCCCCCcHHHHHHHH---HHHHHhhhH
Confidence 9999999999999999999999999999984 677775 446899999999999999999998 566777777
Q ss_pred hhcC---CCcccCCCCcchhhhhhhhhhHHHHHHHHHHHH-hccccceeCcC
Q 013198 400 SMKL---PISRWQRDLTDSTVLRNMGGGLGHSLLAYKSAL-QGIAKLQVLYK 447 (448)
Q Consensus 400 ~~~l---~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~-~~l~~L~Vn~e 447 (448)
...+ -..++|||...|..+|+++..+.....++..+. .++++|+||++
T Consensus 345 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~v~~e 396 (464)
T PRK00485 345 AAVTFAGSQGNFELNVFKPVIAYNFLQSIRLLADAMRSFADHCVVGIEPNRE 396 (464)
T ss_pred HHHHHHhccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 5433 234489999998889998888888888888877 99999999986
No 29
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=1.5e-58 Score=521.27 Aligned_cols=335 Identities=17% Similarity=0.150 Sum_probs=277.2
Q ss_pred ccCcC-CCCCccchhhhcC-------hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHH-HHHHHHhcCCccChHh
Q 013198 86 PLDGR-YWSKVKDLAPYMS-------EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKS-YLQGLIDGFNMDDALE 156 (448)
Q Consensus 86 p~d~r-y~~~~~~~~~~fs-------d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~-~l~~~~~~~~~~d~~~ 156 (448)
+.-|| +.+.+++++.+|+ +++++++|+++|+||++||+ +.|+||++++++|. .+.++.+ .+++.
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ah~~~l~---~~gii~~~~a~~I~~~l~~~~~----~~~~~ 480 (887)
T PRK02186 408 AGAGAARPGLPPEAQAIVYGPGASEAPLAELDHLAAIDEAHLVMLG---DTGIVAPERARPLLDAHRRLRD----AGFAP 480 (887)
T ss_pred CCCCccccCCChhhhceecCCCcchhhhhhhHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHH----hHHhh
Confidence 33444 3445899999999 99999999999999999999 58999987777752 2322211 23344
Q ss_pred hHHHHhhhCCcHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 013198 157 VKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDN 236 (448)
Q Consensus 157 i~~~e~~t~hDv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~ 236 (448)
+...+...+ +++++|++|++++|+ ++++|+|+|+|||||++|+++|++|+++.. +.+.|..++++|.++|++|
T Consensus 481 ~~~~~~~~~-~~~~~e~~L~~~~g~-----~~~~~lH~grSrnD~v~T~~~l~lr~~~~~-l~~~l~~l~~~L~~~A~~~ 553 (887)
T PRK02186 481 LLARPAPRG-LYMLYEAYLIERLGE-----DVGGVLQTARSRNDINATTTKLHLREATSR-AFDALWRLRRALVFKASAN 553 (887)
T ss_pred CcCCCCCcc-hHHHHHHHHHHHhCh-----hhhcccCccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHc
Confidence 433332222 449999999999984 479999999999999999999999999995 9999999999999999999
Q ss_pred ccceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcC
Q 013198 237 ANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLG 313 (448)
Q Consensus 237 ~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LG 313 (448)
++++||||||+|||||||||||+++|+++|.|+++||.+++ ..+++||++|+.++ +| .| ++++++.||
T Consensus 554 ~~~~m~g~TH~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~~~r~~~~plG~aag~gt~----~~-~~----~~~~a~~LG 624 (887)
T PRK02186 554 VDCALPIYSQYQPALPGSLGHYLLAVDGALARETHALFALFEHIDVCPLGAGAGGGTT----FP-ID----PEFVARLLG 624 (887)
T ss_pred CCCEeecCccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcccccccCCC----CC-CC----HHHHHHHcC
Confidence 99999999999999999999999999999999999999986 56788889887433 33 23 588899999
Q ss_pred CCCCCCC--CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccc
Q 013198 314 LSFNPYV--TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNL 389 (448)
Q Consensus 314 l~~~~~~--~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~ 389 (448)
|+.+..+ .++.+||+++|++++++.++++|+|||+|+++|++ +|++++ ++++++||||||||+||+.+|++++
T Consensus 625 f~~~~~n~~da~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~~~~e~g~i~~-~~~~~~gSSiMPqKrNP~~~E~ir~-- 701 (887)
T PRK02186 625 FEQPAPNSLDAVASRDGVLHFLSAMAAISTVLSRLAQDLQLWTTREFALVSL-PDALTGGSSMLPQKKNPFLLEFVKG-- 701 (887)
T ss_pred CCCCccCHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEC-CCccccccCCCCCCCCCcHHHHHHH--
Confidence 9975443 35799999999999999999999999999999986 899888 4578899999999999999999999
Q ss_pred cchHHHHHHHhhcC---CCcccCCCCcchhhhh-hhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 390 GKANEDLSFLSMKL---PISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 390 ~la~~~~g~~~~~l---~~~~~eRDl~ds~~~r-~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
+++.+.|++...+ -...++||...|...| .+++++..+..++..+..+|++|+||++
T Consensus 702 -~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~ 762 (887)
T PRK02186 702 -RAGVVAGALASASAALGKTPFSNSFEAGSPMNGPIAQACAAIEDAAAVLVLLIDGLEADQA 762 (887)
T ss_pred -HHHHHhhHHHHHHHHHccCCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhCEECHH
Confidence 5557777765433 1122566666565554 6788999999999999999999999986
No 30
>cd01357 Aspartase Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=100.00 E-value=3.2e-58 Score=483.40 Aligned_cols=321 Identities=20% Similarity=0.147 Sum_probs=255.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHH-HHHHHh-cC-CccChHhhHHHHhhh----CCcHhHHHHHHH
Q 013198 104 EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSY-LQGLID-GF-NMDDALEVKNIERVT----NHDVKAVEYFLK 176 (448)
Q Consensus 104 d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~-l~~~~~-~~-~~~d~~~i~~~e~~t----~hDv~ave~~L~ 176 (448)
|.+++++|++||+||++||+ +.|+||++.+++|.+ +..+.+ .+ +...++...+.+.++ .|++.+.. +.
T Consensus 37 d~~~i~~~l~ve~A~a~al~---~~Giip~~~a~~I~~al~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~vi~~~--~~ 111 (450)
T cd01357 37 HPELIRALAMVKKAAALANA---ELGLLDEEKAEAIVKACDEIIAGKLHDQFVVDVIQGGAGTSTNMNANEVIANR--AL 111 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhccccCCCccchhhccccchhhhhHhHHHHHH--HH
Confidence 78999999999999999999 589999877777633 333221 12 111144444444444 55665554 48
Q ss_pred HHhccCcccccccCc--------cccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCC
Q 013198 177 QKCQSQPEIAKVLEF--------FHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQ 248 (448)
Q Consensus 177 e~~g~~~~~~~~~~~--------iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q 248 (448)
+++|+ ++++| ||+|+||||+++|+++|++|+++.. +.+.|..++++|.++|++|++++|+||||+|
T Consensus 112 e~~g~-----~~g~~~~~h~~~~vH~GrSrnD~v~Ta~~L~lr~~l~~-l~~~L~~l~~~L~~~A~~~~~t~m~GrTH~Q 185 (450)
T cd01357 112 ELLGH-----EKGEYQYVHPNDHVNMSQSTNDVYPTALRLALILLLRK-LLDALAALQEAFQAKAREFADVLKMGRTQLQ 185 (450)
T ss_pred HHhCc-----cccCCcccCCcccccCCCChHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCEeeccccCc
Confidence 88874 35676 9999999999999999999999995 9999999999999999999999999999999
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHccc---ccccccc-cccccccccccCCCCChhHHHHHHHHhcCCCCCCCC---C
Q 013198 249 PASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV---T 321 (448)
Q Consensus 249 ~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgG-AvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~---~ 321 (448)
||||||||||+++|+++|.|+++||.++. ..+++|| |+||.......+ -+.+.+++++.|||+.++.. +
T Consensus 186 ~A~P~TfG~~~~~~~~~l~r~~~rL~~~~~~~~~~pLGg~AvGt~~~~~~~~----~~~v~~~~a~~LGl~~~~~~n~~~ 261 (450)
T cd01357 186 DAVPMTLGQEFGAYATALKRDRARIYKARERLREVNLGGTAIGTGINAPPGY----IELVVEKLSEITGLPLKRAENLID 261 (450)
T ss_pred ccccchHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceeCCCCCChhH----HHHHHHHHHHHhCCCCccCcCHHH
Confidence 99999999999999999999999999985 5677776 899843221111 14678899999999964332 2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHH
Q 013198 322 QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDL 396 (448)
Q Consensus 322 ~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s-----~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~ 396 (448)
++.+||++++++++++.++++|+|||+|+++|+| +|++.+ +.+++|||||||||||+.+|.+++ +|+.+.
T Consensus 262 a~~~rd~~~e~~~~l~~~a~~L~riA~Di~l~ss~e~~~~gev~~--p~~~~GSSiMPqKrNP~~~E~ir~---~a~~v~ 336 (450)
T cd01357 262 ATQNTDAFVEVSGALKRLAVKLSKIANDLRLLSSGPRAGLGEINL--PAVQPGSSIMPGKVNPVIPEVVNQ---VAFQVI 336 (450)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCceeEEC--CCCCCcCCCCCCCcCcHHHHHHHH---HHHHHh
Confidence 5689999999999999999999999999999984 555654 468999999999999999999998 566777
Q ss_pred HHHhh------cCCCcccCCCCcchhhhhhhhhhHHHHHHHHHHH-HhccccceeCcC
Q 013198 397 SFLSM------KLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSA-LQGIAKLQVLYK 447 (448)
Q Consensus 397 g~~~~------~l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~-~~~l~~L~Vn~e 447 (448)
|++.. .++.. ++++.+. ....++.++..+..++..+ ..+|++|+||++
T Consensus 337 g~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~l~~l~v~~e 391 (450)
T cd01357 337 GNDLTITMAAEAGQLE-LNVFEPV--IAYNLLESIDILTNAVRTLRERCIDGITANEE 391 (450)
T ss_pred hHHHHHHHHHhcCcch-hhcchHH--HHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 76643 33444 5554332 3345677888999999999 599999999986
No 31
>PRK06389 argininosuccinate lyase; Provisional
Probab=100.00 E-value=4.3e-58 Score=476.75 Aligned_cols=323 Identities=16% Similarity=0.177 Sum_probs=266.8
Q ss_pred CccCcCCCCCcc-c-hhhhcC-----hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHH-HHHHHHHhcCCccChHh
Q 013198 85 SPLDGRYWSKVK-D-LAPYMS-----EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAK-SYLQGLIDGFNMDDALE 156 (448)
Q Consensus 85 sp~d~ry~~~~~-~-~~~~fs-----d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~-~~l~~~~~~~~~~d~~~ 156 (448)
+.|.|||...++ + +..+++ |..++++++.+.+||+.||+ +.|+||++.+..+ +.|.++.+ +.++.
T Consensus 2 klw~gr~~~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~---~~gii~~~e~~~i~~~L~~i~~----~~~~~ 74 (434)
T PRK06389 2 KIWSGGAGEELENDFYDNIVKDDIDADKNLIKYEIINLLAYHVALA---QRRLITEKAPKCVINALIDIYK----NGIEI 74 (434)
T ss_pred CCcccccCCCCchHHHHHHHCCCHHHHHHHHHHHHHHhHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHc----CCCcC
Confidence 479999998655 4 334423 77899999999999999999 5899998666664 44444322 23333
Q ss_pred hHHHHhhhCCcH-hHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013198 157 VKNIERVTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKD 235 (448)
Q Consensus 157 i~~~e~~t~hDv-~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~ 235 (448)
..+.| || .++|++|.+++|+ +++++|+||||||++.|+++|++|+.+.+ +...+.+++++|.++
T Consensus 75 ~~~~E-----Dvh~~iE~~L~~~~G~------~gg~lhtgRSRNDqvat~~RL~~r~~~~~-~~~~l~~l~~~l~~~--- 139 (434)
T PRK06389 75 DLDLE-----DVHTAIENFVIRRCGD------MFKNFRLFLSRNEQVHADLNLFIIDKIIE-IEKILYEIIKVIPGF--- 139 (434)
T ss_pred CCCCC-----chHHHHHHHHHHHhch------hhhhhcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---
Confidence 34455 99 9999999999984 79999999999999999999999999997 999999999999965
Q ss_pred cccceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccc--cccccccccccccCCCCChhHHHHHHHH
Q 013198 236 NANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKF--AGAVGNYNAHLSAYPDVNWPQITEDFVK 310 (448)
Q Consensus 236 ~~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~l--gGAvGT~~a~~~~~~~~d~~~~~~~la~ 310 (448)
|.|++||||||+|||||+|||||+++|++.|.|+++||.++. ..+++ ||++||. +| + .++++|+
T Consensus 140 ~~dtimpGyTHlQ~AqP~TfG~~l~a~a~~L~rd~~RL~~~~~r~~~~pLGaga~~Gt~------~~-i----dr~~~A~ 208 (434)
T PRK06389 140 NLKGRLPGYTHFRQAMPMTVNTYINYIKSILYHHINNLDSFLMDLREMPYGYGSGYGSP------SS-V----KFNQMSE 208 (434)
T ss_pred ccCceeccccccCcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCC------ch-h----hHHHHHH
Confidence 999999999999999999999999999999999999999985 23333 4556762 22 2 3788999
Q ss_pred hcCCCCC---CCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceeeccCCCCcccCCCCCCcCchHHHHhhc
Q 013198 311 SLGLSFN---PYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEG 387 (448)
Q Consensus 311 ~LGl~~~---~~~~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g 387 (448)
.|||+.+ +...+...+|.+++++++++.++++|+|||+|+++|++.|++++ ++..++||||||||+||+.+|.+++
T Consensus 209 lLGf~~~~~n~~~a~~~~~~~~~e~~~~la~la~~LsRiA~Dl~l~ss~g~iel-pd~~~~GSSiMPqKrNP~~~E~ir~ 287 (434)
T PRK06389 209 LLGMEKNIKNPVYSSSLYIKTIENISYLISSLAVDLSRICQDIIIYYENGIITI-PDEFTTGSSLMPNKRNPDYLELFQG 287 (434)
T ss_pred HhCCCCCCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEe-cCCCCCCCCCCCCCcCcHHHHHHHH
Confidence 9999983 33323344555889999999999999999999999999999997 5677899999999999999999999
Q ss_pred cccchHHHHHHHhh------cCCCcccCCCCcchhhhhhhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 388 NLGKANEDLSFLSM------KLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 388 ~~~la~~~~g~~~~------~l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
. +..+.|.++. ++|.+ |+||+|+.+. .++.++..+..+++.+..++++++||++
T Consensus 288 ~---a~~v~g~~~~~~~~~~n~~~~-y~~D~q~~~~--~~~~~~~~~~~~l~l~~~~i~~l~~~~~ 347 (434)
T PRK06389 288 I---AAESISVLSFIAQSELNKTTG-YHRDFQIVKD--STISFINNFERILLGLPDLLYNIKFEIT 347 (434)
T ss_pred H---HHHHHHHHHHHHHHHcCCcch-hhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhCeECHH
Confidence 4 5567777653 34666 9999998764 4678999999999999999999999875
No 32
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=7.6e-58 Score=482.87 Aligned_cols=320 Identities=19% Similarity=0.150 Sum_probs=256.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHH-HHHHHhcC--CccChHhhHHHHhhhC----CcHhHHHHHHHH
Q 013198 105 YGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSY-LQGLIDGF--NMDDALEVKNIERVTN----HDVKAVEYFLKQ 177 (448)
Q Consensus 105 ~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~-l~~~~~~~--~~~d~~~i~~~e~~t~----hDv~ave~~L~e 177 (448)
++++++|++||+||++||+ +.|+||++.+++|.. +..+.+.. +..+++...+.+.++. |++.+.. .+ +
T Consensus 45 ~~~~~~~l~ve~A~a~al~---~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~~~~e~~~~~v~~~i~~~-~~-e 119 (472)
T PRK12273 45 PELIRALAMVKKAAALANK---ELGLLDEEKADAIVAACDEILAGKLHDQFVVDVIQGGAGTSTNMNANEVIANR-AL-E 119 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhccccCCcccchhhccccchhhhHHHHHHHHH-HH-H
Confidence 5789999999999999999 589999877777633 33332211 1124445545555555 4554444 33 7
Q ss_pred HhccCcccccccCc--cc------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCCC
Q 013198 178 KCQSQPEIAKVLEF--FH------FACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQP 249 (448)
Q Consensus 178 ~~g~~~~~~~~~~~--iH------~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~ 249 (448)
++|+ +.++| +| +|+||||+++|+++|++|+++.. +.+.|.+++++|.++|++|+||+||||||+||
T Consensus 120 ~~g~-----~~~~~~~vHp~d~v~~GrSrnD~v~Ta~~L~lr~~l~~-l~~~L~~l~~~L~~~A~~~~dt~m~GrTH~Q~ 193 (472)
T PRK12273 120 LLGH-----EKGEYQYVHPNDHVNMSQSTNDAYPTAIRIALLLSLRK-LLDALEQLQEAFEAKAKEFADILKMGRTQLQD 193 (472)
T ss_pred HhCc-----ccCCcceeCCCCCCCCCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCEEeecccCcc
Confidence 8874 35667 99 99999999999999999999995 99999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHccc---ccccccc-cccccccccccCCCCChhHHHHHHHHhcCCCCCCCC---Cc
Q 013198 250 ASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV---TQ 322 (448)
Q Consensus 250 A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgG-AvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~---~~ 322 (448)
|||||||||+++|+++|.|+++||.++. ..+++|| |+||..... +++ -+.+.+++++.|||+.++.. ++
T Consensus 194 AqP~TfG~~~a~~~~~l~r~~~RL~~~~~~~~~~plGg~AvGT~~~i~---~~~-~~~v~~~~A~~LGf~~~~~~n~~da 269 (472)
T PRK12273 194 AVPMTLGQEFGAYAVALAEDRKRLYRAAELLREVNLGATAIGTGLNAP---PGY-IELVVEKLAEITGLPLVPAEDLIEA 269 (472)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeCCCCCC---hhH-HHHHHHHHHHHcCCCcccCcCHHHH
Confidence 9999999999999999999999999985 5677776 899843221 111 14678899999999974332 26
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHH
Q 013198 323 IETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLS 397 (448)
Q Consensus 323 i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s-----~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g 397 (448)
+.+||++++++++++.++++|+|||+|+++|+| +|++.+ +.+++|||||||||||+.+|.+++ +++.+.|
T Consensus 270 ~~~rD~~~e~~~~la~la~~L~rlA~Di~llss~e~~e~gev~l--p~~~~GSSiMPqKrNP~~~E~ir~---~a~~v~G 344 (472)
T PRK12273 270 TQDTGAFVEVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINL--PAVQAGSSIMPGKVNPVIPEVVNQ---VCFQVIG 344 (472)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCceEEEC--CCCCCcCCCCCcccCcHHHHHHHH---HHHHHhh
Confidence 789999999999999999999999999999985 566665 458999999999999999999998 5667877
Q ss_pred HHhhc------CCCcccCCCCcchhhhhhhhhhHHHHHHHHHHHHh-ccccceeCcC
Q 013198 398 FLSMK------LPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQ-GIAKLQVLYK 447 (448)
Q Consensus 398 ~~~~~------l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~-~l~~L~Vn~e 447 (448)
++... ++.. +++|.+.. ...++.++..+..++..+.+ ++++|+||++
T Consensus 345 ~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~l~~l~v~~e 398 (472)
T PRK12273 345 NDTTVTMAAEAGQLE-LNVMEPVI--AYNLFESISILTNACRTLREKCIDGITANEE 398 (472)
T ss_pred hHHHHHHHHHcCCch-hhhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 77543 3554 55654332 34566789999999999995 9999999986
No 33
>KOG1316 consensus Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.9e-58 Score=449.66 Aligned_cols=328 Identities=21% Similarity=0.229 Sum_probs=287.9
Q ss_pred cCccCcCCCCCccchhhhcC-----hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHH-HHHHHHHhcCCccChHhh
Q 013198 84 LSPLDGRYWSKVKDLAPYMS-----EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAK-SYLQGLIDGFNMDDALEV 157 (448)
Q Consensus 84 ~sp~d~ry~~~~~~~~~~fs-----d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~-~~l~~~~~~~~~~d~~~i 157 (448)
.+.|+|||...++++.+.|. |..+++.+++..+|++++|+ +.|+|.....+.+ ..|+++..++..+.+...
T Consensus 6 ~KlWGGRFtg~~dp~m~~fn~Si~ydk~ly~~Dv~gSkaya~~L~---~~glit~~e~dkil~gLe~i~~ew~~~kf~~~ 82 (464)
T KOG1316|consen 6 QKLWGGRFTGAVDPLMEKFNASIPYDKRLYEADVDGSKAYAKALE---KAGLITEAELDKILKGLEKIRREWAAGKFKLN 82 (464)
T ss_pred hhhhccccCCCCCHHHHHhhccCccchHHHHhhhhhhHHHHHHHH---HcCCCcHHHHHHHHHHHHHHHHHHhcCceEeC
Confidence 46799999999999988887 77899999999999999999 5899986444443 445556566666667666
Q ss_pred HHHHhhhCCcH-hHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 013198 158 KNIERVTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDN 236 (448)
Q Consensus 158 ~~~e~~t~hDv-~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~ 236 (448)
+..| || .+.|+.|.|.+|+ .++++|+||||||++.|.++||+|++++. +...+..|++++.++|+.+
T Consensus 83 p~dE-----DvHtanErrL~eliG~------~agKlHTgRSRNDQV~TDlRLw~r~~i~~-~~~~l~~L~~~~v~rAe~~ 150 (464)
T KOG1316|consen 83 PNDE-----DVHTANERRLTELIGE------IAGKLHTGRSRNDQVVTDLRLWLRDAIDT-ILGLLWNLIRVLVDRAEAE 150 (464)
T ss_pred CCch-----hhhhHHHHHHHHHHhh------hhhhcccCccccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhc
Confidence 7777 99 9999999999995 79999999999999999999999999996 8899999999999999999
Q ss_pred ccceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc------cccccccc-ccccccccccCCCCChhHHHHHHH
Q 013198 237 ANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE------IMGKFAGA-VGNYNAHLSAYPDVNWPQITEDFV 309 (448)
Q Consensus 237 ~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~------~lg~lgGA-vGT~~a~~~~~~~~d~~~~~~~la 309 (448)
.|++||||||+|.|||+.|.||+..++..|.||..||.+++ |+|. || +|| .+ ++| ++-++
T Consensus 151 ~dvlmpGYTHLQRAQpvrwsH~LlSha~~l~~D~~Rl~q~~~R~n~~PLGa--gALAGn------pl-~iD----R~~la 217 (464)
T KOG1316|consen 151 LDVLMPGYTHLQRAQPVRWSHWLLSHAEQLTRDLGRLVQIRKRLNQLPLGA--GALAGN------PL-GID----REFLA 217 (464)
T ss_pred cCeeccChhhhhhccCchhHHHHHHHHHHHHhHHHHHHHHHHHhccCCccc--chhcCC------CC-Ccc----HHHHH
Confidence 99999999999999999999999999999999999999985 5553 55 466 23 355 56678
Q ss_pred HhcCCCC---CCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHH
Q 013198 310 KSLGLSF---NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFEN 384 (448)
Q Consensus 310 ~~LGl~~---~~~~~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~ 384 (448)
+.|||.. |+++ +++.||+++|+..+.++++.+|+|+|+|+++|++ |||+.+ .++..+|||+||||+||+.+|.
T Consensus 218 ~~LgF~~v~~NSm~-AvsDRDFVvef~fw~sm~m~HlSRlaEdlIiy~t~EF~Fv~l-SDaySTGSSlMPQKKNpDslEL 295 (464)
T KOG1316|consen 218 EELGFEGVIMNSMD-AVSDRDFVVEFLFWASMVMTHLSRLAEDLIIYSTKEFGFVTL-SDAYSTGSSLMPQKKNPDSLEL 295 (464)
T ss_pred HhcCCcccchhhhh-ccccchhHHHHHHHHHHHHHHHHHHhhHhheeeccccCceee-ccccccCcccCCCCCCCCHHHH
Confidence 9999997 5664 8999999999999999999999999999999986 999987 7889999999999999999999
Q ss_pred hhccccchHHHHHHHhh------cCCCcccCCCCcchhhhhhhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 385 SEGNLGKANEDLSFLSM------KLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 385 ~~g~~~la~~~~g~~~~------~l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
+||+.+ ++.|.+.+ ++|.. |++|+|+.+- .+++.+.-....++...+++++|+||+|
T Consensus 296 lRgksg---rV~gdl~g~lmt~KG~Pst-YnkDlQeDKe--p~Fds~~tv~~~l~v~tgv~stltvn~e 358 (464)
T KOG1316|consen 296 LRGKSG---RVFGDLTGLLMTLKGLPST-YNKDLQEDKE--PLFDSSKTVSDSLQVATGVISTLTVNQE 358 (464)
T ss_pred hccccc---eehhhhHHHHHHhcCCccc-cccchhhhhh--HHHhhHHHHHHHHHHHHHHhhheeECHH
Confidence 999766 66666643 57888 9999999987 4889999999999999999999999986
No 34
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=5.6e-57 Score=476.40 Aligned_cols=321 Identities=18% Similarity=0.122 Sum_probs=250.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHH-HHHHHh-cC-CccChHhhHHHHhhh----CCcHhHHHHHHH
Q 013198 104 EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSY-LQGLID-GF-NMDDALEVKNIERVT----NHDVKAVEYFLK 176 (448)
Q Consensus 104 d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~-l~~~~~-~~-~~~d~~~i~~~e~~t----~hDv~ave~~L~ 176 (448)
..+++++|++||+||+++|+ +.|+||++.+++|.+ +..+.+ .+ +...++...+.+.++ .|+| ++++|.
T Consensus 42 ~~~~i~a~~~ve~A~a~~l~---~~Glip~~~a~~I~~al~~i~~~~~~d~f~~~~~~~~~~~~~~~n~~~v--i~~~l~ 116 (473)
T PRK13353 42 HPELIRAFAQVKKAAALANA---DLGLLPRRIAEAIVQACDEILAGKLHDQFIVDPIQGGAGTSTNMNANEV--IANRAL 116 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhccccCCCCcchhhccccchhcchhhHH--HHHHHH
Confidence 46799999999999999999 589999877777633 333322 11 111133333333333 3333 448899
Q ss_pred HHhccCcccccccC--------ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCC
Q 013198 177 QKCQSQPEIAKVLE--------FFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQ 248 (448)
Q Consensus 177 e~~g~~~~~~~~~~--------~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q 248 (448)
+++|+ +.++ +||+|+||||+++|+++|++|+++.. +.+.|.+++++|.++|++|+|++||||||+|
T Consensus 117 e~~g~-----~~g~~~~~hp~d~vH~GrSrnD~v~Ta~~L~~r~~l~~-l~~~L~~l~~~L~~~A~~~~~~im~GrTH~Q 190 (473)
T PRK13353 117 ELLGG-----EKGDYHYVSPNDHVNMAQSTNDVFPTAIRIAALNLLEG-LLAAMGALQDVFEEKAAEFDHVIKMGRTQLQ 190 (473)
T ss_pred HHhCc-----cccCCccCCcccCccCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCeeeccccCc
Confidence 99985 3566 49999999999999999999999995 9999999999999999999999999999999
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHccc---ccccccc-cccccccccccCCCCChhHHHHHHHHhcCCCCCCCC---C
Q 013198 249 PASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV---T 321 (448)
Q Consensus 249 ~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgG-AvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~---~ 321 (448)
||+||||||||++|+++|.|+++||.++. ..+++|| |+||..... +++. ..+.+++++.|||+.++.. +
T Consensus 191 ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~pLGg~AvGT~~~~~---~~~~-~~~~~~la~~LG~~~~~~~n~~~ 266 (473)
T PRK13353 191 DAVPITLGQEFSAYARALKRDRKRIQQAREHLYEVNLGGTAVGTGLNAD---PEYI-ERVVKHLAAITGLPLVGAEDLVD 266 (473)
T ss_pred cceeecHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccCCccCC---hhHH-HHHHHHHHHHhCCCCccccchHh
Confidence 99999999999999999999999999985 5667776 899942221 1111 3567889999999975433 2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHH
Q 013198 322 QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDL 396 (448)
Q Consensus 322 ~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s-----~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~ 396 (448)
++++||++++++++++.++++|+|||+|+++|+| +|++.+ |.+++||||||||+||+.+|.+++ +|+.+.
T Consensus 267 a~~~rD~~~e~~~~la~la~~l~riA~Dl~llss~pr~e~gev~l--p~~~~GSSiMPqKrNP~~~E~ir~---~a~~v~ 341 (473)
T PRK13353 267 ATQNTDAFVEVSGALKVCAVNLSKIANDLRLLSSGPRTGLGEINL--PAVQPGSSIMPGKVNPVMPEVVNQ---IAFQVI 341 (473)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCceEEEC--CCCCCCCCCCCCCcCChHHHHHHH---HHHHHH
Confidence 5689999999999999999999999999999983 677765 449999999999999999999998 666887
Q ss_pred HHHhhc------CCCcccCCCCcchhhhhhhhhhHHHHHHHHHHHH-hccccceeCcC
Q 013198 397 SFLSMK------LPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSAL-QGIAKLQVLYK 447 (448)
Q Consensus 397 g~~~~~------l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~-~~l~~L~Vn~e 447 (448)
|++... ++.. ++++.+. ...+++.++.....++..+. .+|++|+||++
T Consensus 342 g~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~gL~vn~e 396 (473)
T PRK13353 342 GNDVTITLAAEAGQLE-LNVMEPV--IAFNLLESISILTNACRAFTDNCVKGIEANEE 396 (473)
T ss_pred hHHHHHHHHHHcCChh-hhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 777543 3443 4453322 22345556666676777776 79999999986
No 35
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=100.00 E-value=5e-57 Score=475.48 Aligned_cols=327 Identities=17% Similarity=0.126 Sum_probs=256.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHH-HHHHHhcCCccChHhhHHHHhhhCCcH-hHH----HHHHHH
Q 013198 104 EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSY-LQGLIDGFNMDDALEVKNIERVTNHDV-KAV----EYFLKQ 177 (448)
Q Consensus 104 d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~-l~~~~~~~~~~d~~~i~~~e~~t~hDv-~av----e~~L~e 177 (448)
.++++++|++||.||+++|+ +.|+||++.+++|.+ +.++.+.-...+...+......+|.|+ +++ +..|.+
T Consensus 39 ~~~~i~~~l~ve~A~a~al~---e~GiIp~~~a~~I~~al~~~~d~~~~~~~~~l~~~~~~~g~~~~~~v~~vie~~l~e 115 (468)
T TIGR00839 39 IPEFVRGMVMVKKAAALANK---ELGTIPESIANAIVAACDEILNNGKCHDQFPVDVYQGGAGTSVNMNTNEVIANLALE 115 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhcccccccccccHHHccCccccccchHHHHHHHHHH
Confidence 47899999999999999999 589999988887633 333322111012334455566666333 332 555999
Q ss_pred HhccCcccccccCcccc--------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCCC
Q 013198 178 KCQSQPEIAKVLEFFHF--------ACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQP 249 (448)
Q Consensus 178 ~~g~~~~~~~~~~~iH~--------G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~ 249 (448)
++|. +.++|+|+ |+||||+++|+++|++|+++.. +.+.|..++++|.++|++|++++|+||||+||
T Consensus 116 ~~g~-----~~g~~~H~~p~~~v~~G~S~nD~v~Ta~~L~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~ 189 (468)
T TIGR00839 116 LMGH-----QKGEYQYLNPNDHVNKSQSTNDAYPTGFRIAVYSSLIK-LVDAINQLRDGFEQKAKEFADILKMGRTQLQD 189 (468)
T ss_pred HhCc-----cccCeeecCCCCCCCCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCeeeccccCcc
Confidence 9984 47899995 9999999999999999999995 99999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHccc---ccccccc-cccccccccccCCCCChhHHHHHHHHhcCCCCCCCCC---c
Q 013198 250 ASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT---Q 322 (448)
Q Consensus 250 A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgG-AvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~---~ 322 (448)
|||||||||+++|++.|.|+++||.+++ ..+++|| |+||..... ++. -+.+++++++.|||+.++..+ +
T Consensus 190 A~P~TfG~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~AvGT~~~~~---~~~-~~~v~~~~a~~LGl~~~~~~n~~da 265 (468)
T TIGR00839 190 AVPMTLGQEFEAFSILLEEEVKNIKRTAELLLEVNLGATAIGTGLNTP---PEY-SPLVVKKLAEVTGLPCVPAENLIEA 265 (468)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceeCCCcCC---hhH-HHHHHHHHHHHhCCCCCCCccHHHH
Confidence 9999999999999999999999999985 5677776 899843221 111 156889999999999764322 4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHH
Q 013198 323 IETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS---LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFL 399 (448)
Q Consensus 323 i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s---~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~ 399 (448)
+.+||++++++++++.++++|+|||+|+++|+| .|+.++..+.+++||||||||+||+.+|.+++ +++.+.|++
T Consensus 266 ~~~rd~~~e~~~~l~~la~~L~ria~Dl~l~~s~~~~~~~ev~~~~~~~gSS~MPqKrNP~~~E~ir~---~a~~~~g~~ 342 (468)
T TIGR00839 266 TSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQ---VCFKVIGND 342 (468)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCceEEeCCCCCCCCCCCCCCcCcHHHHHHHH---HHHHHHhHH
Confidence 579999999999999999999999999999985 24433334578999999999999999999998 666888887
Q ss_pred hhcCCCcccCCCCcchhhhh----hhhhhHHHHHHHHHH-HHhccccceeCcC
Q 013198 400 SMKLPISRWQRDLTDSTVLR----NMGGGLGHSLLAYKS-ALQGIAKLQVLYK 447 (448)
Q Consensus 400 ~~~l~~~~~eRDl~ds~~~r----~l~~~l~~~~~al~~-~~~~l~~L~Vn~e 447 (448)
...+... ...+++.|..+| .++.++.....++.. +..++++|+||++
T Consensus 343 ~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~vn~e 394 (468)
T TIGR00839 343 TTVTLAA-EAGQLQLNVMEPVIGQAMFESIHILTNACYNLTDKCVNGITANKE 394 (468)
T ss_pred HHHHHHH-hcCChHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 6552211 113333444444 355666777777764 8889999999986
No 36
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=100.00 E-value=8.6e-57 Score=473.07 Aligned_cols=322 Identities=21% Similarity=0.195 Sum_probs=256.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHH-HHHHHh-cCCccC-hHhhHHHHhhhC-----CcHhHHHHHHH
Q 013198 105 YGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSY-LQGLID-GFNMDD-ALEVKNIERVTN-----HDVKAVEYFLK 176 (448)
Q Consensus 105 ~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~-l~~~~~-~~~~~d-~~~i~~~e~~t~-----hDv~ave~~L~ 176 (448)
..++++|++||+||+++|+ ++|+||++.+++|.+ +.++.+ .++ +. +..+.+.++.++ |+|+++ .|.
T Consensus 39 ~~~i~a~~~ve~A~a~a~~---~~Giip~~~a~~I~~a~~~i~~~~~~-~~~~~~~~~~~~~~~~~m~~~~via~--~l~ 112 (458)
T TIGR00979 39 LELIHAFAILKKAAAIVNE---DLGKLDAKKADAIVQAADEILAGKLD-DHFPLVVWQTGSGTQSNMNVNEVIAN--RAI 112 (458)
T ss_pred HHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhcccc-CCCceecccccccccccccHHHHHHH--HHH
Confidence 7899999999999999999 589999877777633 333322 121 11 334455666777 777666 899
Q ss_pred HHhccCcccccc--cCccc------cCCChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcccceeeccccC
Q 013198 177 QKCQSQPEIAKV--LEFFH------FACTSEDINNLAHALMLKEAI-NKVMFPVMDKLIKALCEIAKDNANISMLSRTHG 247 (448)
Q Consensus 177 e~~g~~~~~~~~--~~~iH------~G~SsnDi~~Ta~~L~lr~~l-~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~ 247 (448)
+++|+ +. .+||| +|+||||+++|+++|++|+++ .. +.+.|.+++++|.++|++|+|++|+||||+
T Consensus 113 e~~g~-----~~g~~~~vH~~d~vn~G~S~nDiv~Ta~~L~lr~~l~~~-l~~~l~~l~~~L~~~A~~~~dt~m~GrTH~ 186 (458)
T TIGR00979 113 ELLGG-----KLGSKQPVHPNDHVNKSQSSNDTFPTAMHIAAVLAIKNQ-LIPALENLKKTLDAKSKEFAHIVKIGRTHL 186 (458)
T ss_pred HHcCc-----ccCCCceeCCCCCCCCCCCcccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCeeeccccc
Confidence 99984 34 45699 699999999999999999999 55 999999999999999999999999999999
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccc-cccccccccccCCCCChhHHHHHHHHhcCCCCCCCC--C
Q 013198 248 QPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV--T 321 (448)
Q Consensus 248 Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgG-AvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~--~ 321 (448)
|||+||||||||++|++.|.|+++||.+++ ..+++|| |+||..... ++++ +.+.+++++.|||+.++.+ +
T Consensus 187 Q~A~P~TfG~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~AvGT~~~~~---~~~~-~~v~~~~a~~LGl~~~~~~n~~ 262 (458)
T TIGR00979 187 QDATPLTLGQEFSGYVAQLEHGLERIAYSLPHLYELAIGGTAVGTGLNTH---PGFD-EKVAEEIAKETGLPFVTAPNKF 262 (458)
T ss_pred ccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhcCCccCC---hhHH-HHHHHHHHHHhCCCCeecCcHH
Confidence 999999999999999999999999999985 5677777 899943322 1112 4567889999999986544 2
Q ss_pred -cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHH
Q 013198 322 -QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANED 395 (448)
Q Consensus 322 -~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s-----~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~ 395 (448)
++.+||++++++++++.++++|+|||+|+++|+| +|++.+ +.+++||||||||+||+.+|.+++ +|+.+
T Consensus 263 ~~~~~rD~~~e~~~~La~la~~L~kia~Dl~llss~~~~e~gev~~--p~~~~GSSiMP~K~NP~~~E~i~~---~a~~v 337 (458)
T TIGR00979 263 EALAAHDAIVEAHGALKTLAASLMKIANDIRWLGSGPRCGLGELFI--PENEPGSSIMPGKVNPTQCEALTM---VCVQV 337 (458)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCceeEEC--CCCCCCCCCCCCCcCCHHHHHHHH---HHHHH
Confidence 5689999999999999999999999999999984 566665 458999999999999999999998 66688
Q ss_pred HHHHhhcC---CCcccCCCCcchhhhhhhhhhHHHHHHHHHHHH-hccccceeCcC
Q 013198 396 LSFLSMKL---PISRWQRDLTDSTVLRNMGGGLGHSLLAYKSAL-QGIAKLQVLYK 447 (448)
Q Consensus 396 ~g~~~~~l---~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~-~~l~~L~Vn~e 447 (448)
.|.+...+ ..+.|+.......+.|+++..+.....++..+. .++++|+||+|
T Consensus 338 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~v~~e 393 (458)
T TIGR00979 338 MGNDATIGFAGSQGNFELNVFKPVIIYNFLQSVRLLSDAMESFRDHCVVGIEPNKE 393 (458)
T ss_pred HhhHHHHHHHHHhccchhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 88775433 222233222233333777777788888877777 69999999986
No 37
>cd01362 Fumarase_classII Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=2.6e-56 Score=469.29 Aligned_cols=329 Identities=21% Similarity=0.184 Sum_probs=250.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHH-HHHHHHhc-CCccC-hHhhHHHHhhhC-----CcHhHHHHHH
Q 013198 104 EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKS-YLQGLIDG-FNMDD-ALEVKNIERVTN-----HDVKAVEYFL 175 (448)
Q Consensus 104 d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~-~l~~~~~~-~~~~d-~~~i~~~e~~t~-----hDv~ave~~L 175 (448)
++.+++.|++||.||+++|+ +.|+||++.+++|. .+.++.+. ++ +. ...+.+.+..++ |++.+ .++
T Consensus 37 ~~~~i~~~l~ve~A~a~al~---~~GiIp~~~a~~I~~al~~i~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~i~--~~~ 110 (455)
T cd01362 37 PRELIRALGLLKKAAAQANA---ELGLLDEEKADAIVQAADEVIAGKLD-DHFPLVVWQTGSGTQTNMNVNEVIA--NRA 110 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhcccc-cCCceehhhccccccccccHHHHHH--HHH
Confidence 47889999999999999999 58999987777763 33333222 21 11 222233333333 33322 333
Q ss_pred HHHhccCccc---ccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCCCccc
Q 013198 176 KQKCQSQPEI---AKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASP 252 (448)
Q Consensus 176 ~e~~g~~~~~---~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~P 252 (448)
++..|+.... -+.++|||+|+|||||++|+++|++|+++..++.+.|.+++++|.++|++|++++|+||||+|||||
T Consensus 111 ~~~~g~~~g~~~~~~~~~~vH~G~SrnDiv~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P 190 (455)
T cd01362 111 IELLGGVLGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALALQERLLPALKHLIDALDAKADEFKDIVKIGRTHLQDATP 190 (455)
T ss_pred HHhcCcccCCcCcCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCCCCee
Confidence 3444521000 0257889999999999999999999999954599999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHccc---ccccccc-cccccccccccCCCCChhHHHHHHHHhcCCCCCCCCC---cccc
Q 013198 253 TTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT---QIET 325 (448)
Q Consensus 253 ~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgG-AvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~---~i~~ 325 (448)
||||||+++|++.|.|+++||.+++ ..+++|| |+||..+.. +++. +.+.+++++.|||..++..| ++.+
T Consensus 191 ~TfG~~~~~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~---~~~~-~~v~~~~a~~LGl~~~~~~n~~da~~~ 266 (455)
T cd01362 191 LTLGQEFSGYAAQLEHAIARIEAALPRLYELALGGTAVGTGLNAH---PGFA-EKVAAELAELTGLPFVTAPNKFEALAA 266 (455)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCeeccCCccCC---hhHH-HHHHHHHHHHhCCCCccCCCHHHHHhC
Confidence 9999999999999999999999986 5778887 899953322 1111 45778999999999755443 4589
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHh
Q 013198 326 HDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLS 400 (448)
Q Consensus 326 rD~~~el~~~la~~~~~L~kia~Dl~~~~s-----~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~ 400 (448)
||++++++++++.++++|+|||+|+++|+| +|++.+ +.+++||||||||+||+.+|++++ +++.+.|.+.
T Consensus 267 rD~~~e~~~~l~~la~~l~ria~Dl~~~~s~~~~e~gev~~--~~~~~GSS~MPqKrNP~~~E~ir~---~a~~~~g~~~ 341 (455)
T cd01362 267 HDALVEASGALKTLAVSLMKIANDIRWLGSGPRCGLGELSL--PENEPGSSIMPGKVNPTQCEALTM---VAAQVMGNDA 341 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccCCCceEEC--CCCCCCCCCCCCCCCcHHHHHHHH---HHHHHhhhHH
Confidence 999999999999999999999999999984 677765 447999999999999999999998 5667777775
Q ss_pred hcC---CCcccCCCCcchhhhhhhhhhHHHHHHHHHHH-HhccccceeCcC
Q 013198 401 MKL---PISRWQRDLTDSTVLRNMGGGLGHSLLAYKSA-LQGIAKLQVLYK 447 (448)
Q Consensus 401 ~~l---~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~-~~~l~~L~Vn~e 447 (448)
..+ ..+.|+...-.....|.++..+..+..++..+ ..++++|+||++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~v~~~ 392 (455)
T cd01362 342 AITIAGSSGNFELNVFKPVIIYNLLQSIRLLADACRSFADKCVAGIEPNRE 392 (455)
T ss_pred HHHHHHhcCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 433 33435432222222366666777777777766 499999999986
No 38
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=1.7e-55 Score=462.29 Aligned_cols=323 Identities=21% Similarity=0.192 Sum_probs=248.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHH-HHHHHh-cCCccCh-HhhHHHHhhhCCcH-hHHHH----HH
Q 013198 104 EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSY-LQGLID-GFNMDDA-LEVKNIERVTNHDV-KAVEY----FL 175 (448)
Q Consensus 104 d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~-l~~~~~-~~~~~d~-~~i~~~e~~t~hDv-~ave~----~L 175 (448)
+++++++|++||+||+++|+ +.|+||++.+++|.. +.++.+ .++ +.+ ..+.+.+. +.|+ ++++. .+
T Consensus 37 ~~~~i~~~l~ve~A~a~al~---~~Giip~~~a~~I~~~l~~i~~~~~~-~~~~~~~~~~~~--~~~~~~~v~~~i~~~~ 110 (450)
T cd01596 37 PPELIRALALVKKAAALANA---ELGLLDEEKADAIVQACDEVIAGKLD-DQFPLDVWQTGS--GTSTNMNVNEVIANRA 110 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHcCccc-CCCcccHHhccC--cccccchHHHHHHHHH
Confidence 47899999999999999999 589999877777633 333221 111 111 11222211 2243 33333 34
Q ss_pred HHHhccCcccccccCc--------cccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccC
Q 013198 176 KQKCQSQPEIAKVLEF--------FHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHG 247 (448)
Q Consensus 176 ~e~~g~~~~~~~~~~~--------iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~ 247 (448)
.+++|+ ..++| +|+|+|||||++|+++|++|+++.. +.+.|.+++++|.++|++|++++||||||+
T Consensus 111 ~~~~g~-----~~g~~~~h~~~~v~h~g~SrnD~v~t~~~L~lr~~l~~-l~~~l~~l~~~L~~lA~~~~~t~m~grTH~ 184 (450)
T cd01596 111 LELLGG-----KKGKYPVHPNDDVNNSQSSNDDFPPAAHIAAALALLER-LLPALEQLQDALDAKAEEFADIVKIGRTHL 184 (450)
T ss_pred HHHhcc-----ccCCcccCCCcccCCCCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCeeeccccc
Confidence 467763 24666 7799999999999999999999995 999999999999999999999999999999
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccc-cccccccccccCCCCChhHHHHHHHHhcCCCCCCCCC--
Q 013198 248 QPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT-- 321 (448)
Q Consensus 248 Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgG-AvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~-- 321 (448)
|+|||||||||+++|+++|.|+++||.++. ..+++|| |+||..... +++ -+.+.+++++.|||+.++..|
T Consensus 185 Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~plGg~A~Gt~~~~~---~~~-~~~v~~~~a~~LGl~~~~~~n~~ 260 (450)
T cd01596 185 QDAVPLTLGQEFSGYAAQLARDIARIEAALERLRELNLGGTAVGTGLNAP---PGY-AEKVAAELAELTGLPFVTAPNLF 260 (450)
T ss_pred cCCeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcceeCCCCCC---hhH-HHHHHHHHHHHhCCCCccCcCHH
Confidence 999999999999999999999999999985 5677776 889843221 111 146788999999999654433
Q ss_pred -cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHH
Q 013198 322 -QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANED 395 (448)
Q Consensus 322 -~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s-----~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~ 395 (448)
++.+||++++++++++.++++|+|||+|+++|+| +|++.+ +.+++|||+||||+||+.+|.+++ +++.+
T Consensus 261 d~~~~rd~~~e~~~~la~~~~~l~ria~Dl~~~ss~~~~e~gev~~--~~~~~GSS~MPqKrNP~~~E~ir~---~a~~~ 335 (450)
T cd01596 261 EATAAHDALVEVSGALKTLAVSLSKIANDLRLLSSGPRAGLGEINL--PANQPGSSIMPGKVNPVIPEAVNM---VAAQV 335 (450)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCeeEEC--CCCCCCCCCCCCCCCCHHHHHHHH---HHHHH
Confidence 5689999999999999999999999999999984 677776 348999999999999999999998 66688
Q ss_pred HHHHhhcC---CCcccCCCCcchhhhhhhhhhHHHHHHHHHHHH-hccccceeCcC
Q 013198 396 LSFLSMKL---PISRWQRDLTDSTVLRNMGGGLGHSLLAYKSAL-QGIAKLQVLYK 447 (448)
Q Consensus 396 ~g~~~~~l---~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~-~~l~~L~Vn~e 447 (448)
.|.+...+ ...+++|....+....+++..+.....++..+. .++++|+||++
T Consensus 336 ~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~ 391 (450)
T cd01596 336 IGNDTAITMAGSAGQLELNVFKPVIAYNLLQSIRLLANACRSFRDKCVEGIEANEE 391 (450)
T ss_pred hccHHHHHHHhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 88775543 233366633333212236667777777777766 99999999986
No 39
>PLN00134 fumarate hydratase; Provisional
Probab=100.00 E-value=2.7e-55 Score=461.73 Aligned_cols=325 Identities=18% Similarity=0.110 Sum_probs=254.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHH-HHHHHHHhcCCccChHhhH---HHHhhhCCcH-hHHHHHHHHHh
Q 013198 105 YGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAK-SYLQGLIDGFNMDDALEVK---NIERVTNHDV-KAVEYFLKQKC 179 (448)
Q Consensus 105 ~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~-~~l~~~~~~~~~~d~~~i~---~~e~~t~hDv-~ave~~L~e~~ 179 (448)
.+++++++.|++||++|+. +.|+||++.+++| +.+.++.+....+.+.... ...-.++.|| ..+|.++.+++
T Consensus 34 ~~~i~a~~~v~~A~a~~l~---~~G~l~~~~a~~I~~al~ei~~~~~~~~f~~~~~~~g~g~~~~~~v~evie~~l~e~~ 110 (458)
T PLN00134 34 EPIVRAFGIVKKAAAKVNM---EYGLLDPDIGKAIMQAADEVAEGKLDDHFPLVVWQTGSGTQTNMNANEVIANRAAEIL 110 (458)
T ss_pred HHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHcCcccCCccccccccCCcccccCcHHHHHHHHHHHHh
Confidence 6799999999999999999 5899998777775 3444443332211221111 0112336677 88999999999
Q ss_pred ccCcccccccCc--cc------cCCChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcccceeeccccCCCc
Q 013198 180 QSQPEIAKVLEF--FH------FACTSEDINNLAHALMLKEA-INKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPA 250 (448)
Q Consensus 180 g~~~~~~~~~~~--iH------~G~SsnDi~~Ta~~L~lr~~-l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A 250 (448)
|+ +.+++ +| +|+||||+++|+++|++|+. +.. +.+.|.+++++|.++|++|+|++|+||||+|||
T Consensus 111 g~-----~~g~~~~lHp~d~vh~G~S~nDiv~Ta~~L~~~~~~~~~-l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A 184 (458)
T PLN00134 111 GG-----PVGEKSPVHPNDHVNRSQSSNDTFPTAMHIAAATEIHSR-LIPALKELHESLRAKSFEFKDIVKIGRTHLQDA 184 (458)
T ss_pred Cc-----ccCCccccCcccccCCCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCccccccccCCC
Confidence 85 35666 67 99999999999999999944 774 999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHccc---ccccccc-cccccccccccCCCCChhHHHHHHHHhcCCCCCCCCC---cc
Q 013198 251 SPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT---QI 323 (448)
Q Consensus 251 ~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgG-AvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~---~i 323 (448)
+||||||||++|++.|.|+++||.++. ..+++|| ||||..... ++++ +.+.+++++.|||+.++..| ++
T Consensus 185 ~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~AvGT~~~~~---~~~~-~~v~~~la~~LGl~~~~~~n~~da~ 260 (458)
T PLN00134 185 VPLTLGQEFSGYATQVKYGLNRVQCTLPRLYELAQGGTAVGTGLNTK---KGFD-EKIAAAVAEETGLPFVTAPNKFEAL 260 (458)
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCccCC---hhHH-HHHHHHHHHHhCCCCCCCccHHHHh
Confidence 999999999999999999999999985 5667776 899842221 2212 46778999999999875544 45
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHH
Q 013198 324 ETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSF 398 (448)
Q Consensus 324 ~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s-----~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~ 398 (448)
.+||++++++++++.++++|+|||+|+++|+| +|++.+ +..++||||||||+||+.+|.+++ ++..+.|.
T Consensus 261 ~~rD~~~e~~~~l~~la~~L~kia~Dl~llss~p~~e~gev~l--p~~~~GSSiMP~KrNPv~~E~i~~---~a~~v~g~ 335 (458)
T PLN00134 261 AAHDAFVELSGALNTVAVSLMKIANDIRLLGSGPRCGLGELNL--PENEPGSSIMPGKVNPTQCEALTM---VCAQVMGN 335 (458)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcceEEC--CCCCCCCCCCCCCcCCHHHHHHHH---HHHHHHhH
Confidence 89999999999999999999999999999984 566665 456899999999999999999998 66688888
Q ss_pred HhhcC---CCcccCCCCcchhhhhhhhhhHHHHHHHHHHH-HhccccceeCcC
Q 013198 399 LSMKL---PISRWQRDLTDSTVLRNMGGGLGHSLLAYKSA-LQGIAKLQVLYK 447 (448)
Q Consensus 399 ~~~~l---~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~-~~~l~~L~Vn~e 447 (448)
+...+ ..+.|+......-..|+++..+.....++..+ ..++++|+||++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~l~~l~vn~e 388 (458)
T PLN00134 336 HVAITVGGSAGHFELNVFKPLIAYNLLHSIRLLGDASASFRKNCVRGIEANRE 388 (458)
T ss_pred HHHHHHHHhcCCchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 75533 12224433222223366666777777777777 599999999986
No 40
>PRK12425 fumarate hydratase; Provisional
Probab=100.00 E-value=4.3e-55 Score=460.67 Aligned_cols=326 Identities=18% Similarity=0.105 Sum_probs=249.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHH-HHHHHHHhcCCccChHhhHHHHhhhCCcH-hHHH----HHHHH
Q 013198 104 EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAK-SYLQGLIDGFNMDDALEVKNIERVTNHDV-KAVE----YFLKQ 177 (448)
Q Consensus 104 d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~-~~l~~~~~~~~~~d~~~i~~~e~~t~hDv-~ave----~~L~e 177 (448)
...+++++..|.+||++|+. +.|+|+++.+++| +.+.++.+....+.+.. .-.....+.|+ +.++ ..+.+
T Consensus 39 ~~~~i~a~~~ik~Aha~~l~---~~G~l~~~~~~~I~~al~ei~~~~~~~~f~~-~~~~~g~~ed~~mnvnevi~~~~~e 114 (464)
T PRK12425 39 PLAVLHALALIKKAAARVND---RNGDLPADIARLIEQAADEVLDGQHDDQFPL-VVWQTGSGTQSNMNVNEVIAGRANE 114 (464)
T ss_pred CHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHcCcccCCCCc-cCCCCCCcchHHHHHHHHHHHHHHH
Confidence 36799999999999999999 5899998777776 44555544332222221 00111224588 8885 44455
Q ss_pred HhccCcccccccCc--------cccCCChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcccceeeccccCC
Q 013198 178 KCQSQPEIAKVLEF--------FHFACTSEDINNLAHALMLKEAI-NKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQ 248 (448)
Q Consensus 178 ~~g~~~~~~~~~~~--------iH~G~SsnDi~~Ta~~L~lr~~l-~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q 248 (448)
++|. +.+++ ||+||||||+++|+++|++|+++ .. +.+.|..++++|.++|++|++++||||||+|
T Consensus 115 ~~G~-----~~g~~~~vhpn~~vh~g~S~ND~~~Ta~~L~~r~~l~~~-l~~~L~~l~~~L~~~A~~~~~tim~GrTHlQ 188 (464)
T PRK12425 115 LAGN-----GRGGKSPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEQ-LLPAIAELSGGLAEQSARHAKLVKTGRTHMM 188 (464)
T ss_pred HhCc-----ccccccccCchhcccCCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCeeecccccc
Confidence 5553 34555 99999999999999999999999 55 9999999999999999999999999999999
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHccc---ccc-cccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCCC---
Q 013198 249 PASPTTLGKEISVFAIRLGRERQEISQVE---IMG-KFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT--- 321 (448)
Q Consensus 249 ~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg-~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~--- 321 (448)
|||||||||||++|++.|.|+++||.++. ..+ .++||+||..... +++ ++.+.+.+++.|||+.++..+
T Consensus 189 ~A~PiT~G~~~~a~~~~l~rd~~RL~~~~~r~~~~plGggAvGT~~~~~---~~~-~~~~~~~La~~LG~~~~~~~n~~d 264 (464)
T PRK12425 189 DATPITFGQELSAFVAQLDYAERAIRAALPAVCELAQGGTAVGTGLNAP---HGF-AEAIAAELAALSGLPFVTAPNKFA 264 (464)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhcCcccCC---ccH-HHHHHHHHHHHhCCCCcccccHHH
Confidence 99999999999999999999999999985 222 3468899932211 111 256778889999999865443
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHH
Q 013198 322 QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS---LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSF 398 (448)
Q Consensus 322 ~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s---~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~ 398 (448)
++++||++++++++++.++++|+|||+|+++|+| +|+.++..|..++||||||||+||+.+|.+++ +|..+.|.
T Consensus 265 a~~~rD~~~e~~~~l~~la~~L~kia~Dl~llsS~p~~g~~ei~lp~~~~GSSiMPqK~NP~~~E~i~~---~a~~v~G~ 341 (464)
T PRK12425 265 ALAGHEPLVSLSGALKTLAVALMKIANDLRLLGSGPRAGLAEVRLPANEPGSSIMPGKVNPTQCEALSM---LACQVMGN 341 (464)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccCCceEEECCCCCCCCCCCCCCcCCHHHHHHHH---HHHHHHhH
Confidence 5699999999999999999999999999999984 66666666777999999999999999999998 66688888
Q ss_pred HhhcCCCcccCCCCcchh----hhhhhhhhHHHHH-HHHHHHHhccccceeCcC
Q 013198 399 LSMKLPISRWQRDLTDST----VLRNMGGGLGHSL-LAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 399 ~~~~l~~~~~eRDl~ds~----~~r~l~~~l~~~~-~al~~~~~~l~~L~Vn~e 447 (448)
+...+... -++|++... ...+++..+.... .++..+..++++|+||++
T Consensus 342 ~~~v~~~~-~~~~~q~n~~~~~~~~~~l~s~~~l~~~~~~~~~~~i~~l~vn~e 394 (464)
T PRK12425 342 DATIGFAA-SQGHLQLNVFKPVIIHNLLQSIRLLADGCRNFQQHCVAGLEPDAE 394 (464)
T ss_pred HHHHHHHH-hcCCchhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 76543211 123333211 1224555666666 445566699999999986
No 41
>PRK14515 aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=9.9e-54 Score=451.04 Aligned_cols=328 Identities=17% Similarity=0.099 Sum_probs=252.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHH-HHHHHHHhcCCccChHhhHHHH-hh--hCCcH-hHHHHHHHHH
Q 013198 104 EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAK-SYLQGLIDGFNMDDALEVKNIE-RV--TNHDV-KAVEYFLKQK 178 (448)
Q Consensus 104 d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~-~~l~~~~~~~~~~d~~~i~~~e-~~--t~hDv-~ave~~L~e~ 178 (448)
+..++++++.+.+||++|+. +.|+|+++.+++| +.+.++.+....+.+......+ .. +|-.| ..+|+.+.++
T Consensus 48 ~~~~i~~~~~v~~A~a~~l~---~~G~l~~~~~~~I~~al~ei~~~~~~~~f~~~~~~~g~~t~~nmnvnevie~~~~~~ 124 (479)
T PRK14515 48 HEGLIKAFAIVKKAAALANT---DVGRLELNKGGAIAEAAQEILDGKWHDHFIVDPIQGGAGTSMNMNANEVIANRALEL 124 (479)
T ss_pred CHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHcCcccCCCCCCcccCCCcccccchHHHHHHHHHHHH
Confidence 56799999999999999999 5899998777776 4555554432222222111111 11 12236 6799999999
Q ss_pred hccCcccccccC--------ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCCCc
Q 013198 179 CQSQPEIAKVLE--------FFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPA 250 (448)
Q Consensus 179 ~g~~~~~~~~~~--------~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A 250 (448)
+|. +.++ +||+||||||+++|+++|++|+.+.. +.+.|..++++|.++|++|++++|+||||+|||
T Consensus 125 ~G~-----~~g~~~~~hpnd~vn~grS~ND~v~Ta~~L~~~~~l~~-l~~~L~~L~~~L~~~A~~~~~~vm~GrTHlQ~A 198 (479)
T PRK14515 125 LGM-----EKGDYHYISPNSHVNMAQSTNDAFPTAIHIATLNALEG-LLQTMGYMHDVFELKAEQFDHVIKMGRTHLQDA 198 (479)
T ss_pred hCc-----ccCCccccCccccCCCCCCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCcccchhccccc
Confidence 985 2345 77799999999999999999999996 999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHccc---cccccc-ccccccccccccCCCCChhHHHHHHHHhcCCCCCCCC---Ccc
Q 013198 251 SPTTLGKEISVFAIRLGRERQEISQVE---IMGKFA-GAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV---TQI 323 (448)
Q Consensus 251 ~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lg-GAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~---~~i 323 (448)
+||||||||++|++.|.|+++||.++. ..+++| ||+||..... +++. ..+...+++.+|+..++.. .++
T Consensus 199 ~PiT~G~~~~~~a~~l~r~~~RL~~~~~~l~~~pLG~gAvGT~~~~~---~~~~-~~~l~~la~~~gl~~~~~~n~~da~ 274 (479)
T PRK14515 199 VPIRLGQEFKAYSRVLERDMKRIQQSRQHLYEVNMGATAVGTGLNAD---PEYI-EAVVKHLAAISELPLVGAEDLVDAT 274 (479)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCCC---hhHH-HHHHHHHHHHhCCCCCCCcchHHHh
Confidence 999999999999999999999999985 455666 8899932211 1111 3455677888998765322 257
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHh
Q 013198 324 ETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS---LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLS 400 (448)
Q Consensus 324 ~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s---~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~ 400 (448)
++||++++++++++.++++|+|||+|+++|+| +|+.|+..|.+++||||||||+||+.+|.+++ ++..+.|+..
T Consensus 275 ~~rd~~~e~~~~l~~la~~L~kiA~Dl~llsS~p~~g~~Ei~lp~~~~GSSiMP~KrNP~~~E~i~~---~a~~v~G~~~ 351 (479)
T PRK14515 275 QNTDAYTEVSAALKVCMMNMSKIANDLRLMASGPRVGLAEIMLPARQPGSSIMPGKVNPVMPEVINQ---IAFQVIGNDH 351 (479)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCeeEEeCCCCCCCcCCCCcccCchHHHHHHH---HHHHHHhHHH
Confidence 88999999999999999999999999999984 89988666778999999999999999999998 6678888876
Q ss_pred hcCCCc-ccCCCCcch-hh-hhhhhhhHHHHHHHHHHHHh-ccccceeCcC
Q 013198 401 MKLPIS-RWQRDLTDS-TV-LRNMGGGLGHSLLAYKSALQ-GIAKLQVLYK 447 (448)
Q Consensus 401 ~~l~~~-~~eRDl~ds-~~-~r~l~~~l~~~~~al~~~~~-~l~~L~Vn~e 447 (448)
..+-.. -|+-.+... .+ ...++.++..+..+++.+.. ++++|+||++
T Consensus 352 ~~~~~~~~~~le~n~~~p~i~~~l~~si~~l~~al~~~~~~~l~gl~vn~e 402 (479)
T PRK14515 352 TICLASEAGQLELNVMEPVLVFNLLQSISIMNNGFRAFTDNCLKGIEANED 402 (479)
T ss_pred HHHHHHhcccHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 543211 122111111 00 11344566677778866655 9999999986
No 42
>KOG2700 consensus Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.5e-44 Score=364.70 Aligned_cols=349 Identities=23% Similarity=0.235 Sum_probs=301.7
Q ss_pred ccCccCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHHh
Q 013198 83 ALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIER 162 (448)
Q Consensus 83 ~~sp~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e~ 162 (448)
+-+|.-+||.+ ..+|.++||+.+.++.|-+++.-++.+-.+ .+++.|++ +++.++.. ..+++..|+..+.+.|+
T Consensus 6 ~~~pls~ry~~-~~~l~~~~s~~~~~~twr~lw~~lA~ae~~-lgL~~itk---~ai~e~~s-~~~~e~~d~~~l~~ee~ 79 (481)
T KOG2700|consen 6 YKSPLSGRYAS-ISELNPIFSDRNKFSTWRRLWLWLAEAEKE-LGLTTITK---EAIEEMKS-SRDIENIDFTALSPEEG 79 (481)
T ss_pred CCCcccceecc-ccccchhhhhhhhhhhhhHHHHhhhhhhhc-CCcccchH---HHHHHHHh-hccccccchhhcChhhh
Confidence 56889999997 479999999999999998888887776652 35666775 55545553 23566779999999999
Q ss_pred hhCCcHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceee
Q 013198 163 VTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISML 242 (448)
Q Consensus 163 ~t~hDv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~ 242 (448)
..+|||+++++.+.+.|.. +++.+|.|.|++++.|.+.-+.+|++.+. +.+.|..+|+.|...+.+|++++|.
T Consensus 80 r~~hdVmahvh~~~~~cp~------aagiihlgatsc~vtdnadli~~rd~~k~-i~~~l~~vIdrls~~~~~~k~~~~~ 152 (481)
T KOG2700|consen 80 RYRHDVMAHVHSFGELCPI------AAGIIHLGATSCFVTDNADLIELRDASKL-ILPYLAGVIDRLSQFADKYKEKPTL 152 (481)
T ss_pred hhcccHHHHHHHHHhhcch------hcceEEeeeeeeeecCCccceechhHHHH-HHHHHHHHHHHHHHHHHHhccceec
Confidence 9999999999999999964 78899999999999999999999999995 9999999999999999999999999
Q ss_pred ccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCC--hhHHHHHHHHhcCCCCC
Q 013198 243 SRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVN--WPQITEDFVKSLGLSFN 317 (448)
Q Consensus 243 gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d--~~~~~~~la~~LGl~~~ 317 (448)
||||.|+|+|+|||++.+-|...|.++.+++..++ ....++||.||.+++.+.+-+.. ..++++.+++.+||...
T Consensus 153 g~Th~q~A~l~tfgkr~~~~~qel~~~l~~f~~~~~~~~~~~~kga~gtqasf~~l~~~~~~kv~~ld~Lv~k~~gf~~~ 232 (481)
T KOG2700|consen 153 GRTHLQPAQLTTFGKRMCLWIQELLRDLERFHRARTDVRFRGLKGATGTQASFLSLFLGDMDKVEKLDSLVTKELGFVPM 232 (481)
T ss_pred ccccCccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHhhcccHHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999986 45557899999888876554432 22344566799999876
Q ss_pred CCCC-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHH
Q 013198 318 PYVT-QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDL 396 (448)
Q Consensus 318 ~~~~-~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~ 396 (448)
..-| |+.+||..++..+.+++++++..|+|.|++++..++.++++++++++|||+||+||||+.+|++.+ +++.+.
T Consensus 233 ~~~TGQt~sr~~~~~~~~~la~lgat~~k~~Tdirll~~~~ev~epFea~q~gsSaMp~krNpm~~E~its---lar~l~ 309 (481)
T KOG2700|consen 233 YIVTGQTYSRKTDAEEVAPLASLGATAHKYATDIRLLAKFAEVEEPFEAHQIGSSAMPYKRNPMRCERITS---LARHLR 309 (481)
T ss_pred ccccCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCCCchhHHHhH---HHHHHH
Confidence 5444 999999999999999999999999999999999999999999999999999999999999999987 888999
Q ss_pred HHHhhcCC---CcccCCCCcchhhhh-hhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 397 SFLSMKLP---ISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 397 g~~~~~l~---~~~~eRDl~ds~~~r-~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
.+..+.++ ..|++|++.||+.+| .++++|-.+...|..+...+++|.|.+.
T Consensus 310 ~~v~~al~~~~~qw~Ertl~dSa~~rivlP~~Fl~ad~~L~~~~ni~~gl~v~p~ 364 (481)
T KOG2700|consen 310 PYVTQALNTASVQWHERTLDDSANRRIVLPDAFLTADGNLGTLLNILEGLVVYPK 364 (481)
T ss_pred HHHHHHhhhHHHHHhhcccccccccceechHHHHHHHHHHHHHHHHHhhcccccH
Confidence 99988886 344689999999999 6677777777778777778888888764
No 43
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=100.00 E-value=2.8e-41 Score=339.12 Aligned_cols=331 Identities=19% Similarity=0.171 Sum_probs=237.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHH-HHHHHh-cCCccChH-hhHHHHhhhC--CcH-hHHHHHHHHH
Q 013198 105 YGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSY-LQGLID-GFNMDDAL-EVKNIERVTN--HDV-KAVEYFLKQK 178 (448)
Q Consensus 105 ~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~-l~~~~~-~~~~~d~~-~i~~~e~~t~--hDv-~ave~~L~e~ 178 (448)
+.++++.-.+-.|-+++=. ++|.+|++-+++|.. -+++++ .++. .|. .+.+-...|. -.+ .-+-..-.+.
T Consensus 41 ~~~I~Al~~lKkaaA~~N~---~LG~L~~~~a~aI~~Aadev~~Gk~d~-~FPl~VwQTGSGTqsNMN~NEVIanrA~e~ 116 (462)
T COG0114 41 REIIRALGLLKKAAAQVNA---DLGLLDPEKADAIIAAADEVLAGKHDD-HFPLDVWQTGSGTQSNMNVNEVIANRASEL 116 (462)
T ss_pred HHHHHHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHHcCcccC-CCCeEEEecCCCccccccHHHHHHHHHHHH
Confidence 4577777777777776666 599999877777533 233333 2221 121 1122222222 223 2222333444
Q ss_pred hccCc---ccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCCCccccch
Q 013198 179 CQSQP---EIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTL 255 (448)
Q Consensus 179 ~g~~~---~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~P~T~ 255 (448)
+|..- ..--..++|++|+||||+++||+++....++..-|+|.|..|+++|.+||++|.+++++||||+|||.|+||
T Consensus 117 ~gg~~g~~~~VHPNDhVN~sQSSNDtfPTAmhIAa~~~v~~~LiPaL~~L~~~L~~Ka~~~~~iVKiGRTHLqDAtPlTl 196 (462)
T COG0114 117 LGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAVVNRLIPALKHLIKTLAAKAEEFADVVKIGRTHLQDATPLTL 196 (462)
T ss_pred hCcccCCCCCCCCCCcCCcccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcCcccccccCcchh
Confidence 54200 001236899999999999999999999988877899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHccc----ccccccccccc-cccccccCCCCChhHHHHHHHHhcCCCCCCCCC---cccchh
Q 013198 256 GKEISVFAIRLGRERQEISQVE----IMGKFAGAVGN-YNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT---QIETHD 327 (448)
Q Consensus 256 G~~la~~~~~L~R~~~rL~~~~----~lg~lgGAvGT-~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~---~i~~rD 327 (448)
|++|++|+..|.+..+++.... .+...|+|||| +|++ |+++ +.+.+.+++..|+++.+.++ +..++|
T Consensus 197 GQE~sGy~~ql~~~~~~i~~~l~~l~eLAiGGTAVGTGlNa~----p~f~-ekva~~i~~~TG~~F~~a~NkF~al~~hd 271 (462)
T COG0114 197 GQEFSGYAAQLEHALERIEASLPHLYELAIGGTAVGTGLNAH----PEFG-EKVAEELAELTGLPFVTAPNKFEALAAHD 271 (462)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCcCCC----ccHH-HHHHHHHHHHhCCCcccCCcHHHHHhcch
Confidence 9999999999999999999873 34445799999 9987 3443 56778888999998865443 678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHhh-cC
Q 013198 328 YMAKLFYAFVRFNNILIDFDRDVWGYIS---LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM-KL 403 (448)
Q Consensus 328 ~~~el~~~la~~~~~L~kia~Dl~~~~s---~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~~-~l 403 (448)
.++++++++..++..|.|||+||++|.| +|+.|+.+|+.++||||||+|+||+.+|.+.. .|.+++|.=.. ..
T Consensus 272 ~lv~~~Gal~~lA~~L~KIAnDiR~l~SGPr~GLgEi~lPenePGSSIMPGKVNPtq~EA~tm---v~~QV~Gnd~ai~~ 348 (462)
T COG0114 272 ALVEASGALRTLAVSLMKIANDIRWLGSGPRCGLGEIELPENEPGSSIMPGKVNPTQCEALTM---VAAQVIGNDAAIAF 348 (462)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCCCccCCCCCCCchhHHHHHH---HHHHHHcchHHHHH
Confidence 9999999999999999999999999988 88888889999999999999999999999876 56677776321 11
Q ss_pred --CCcccCCCCcchhhhhhhhhhHHHHHHHHHHH-HhccccceeCcC
Q 013198 404 --PISRWQRDLTDSTVLRNMGGGLGHSLLAYKSA-LQGIAKLQVLYK 447 (448)
Q Consensus 404 --~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~-~~~l~~L~Vn~e 447 (448)
..+.+|..+----.-+|+.+.+.....+...+ ..++.++++|++
T Consensus 349 ags~GnFELNv~~Pvi~~N~LqS~~LLada~~~f~~~ci~gie~n~~ 395 (462)
T COG0114 349 AGSQGNFELNVFKPVIAYNFLQSVRLLADAMRSFADHCIVGIEPNEE 395 (462)
T ss_pred hhccCceeeccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCHH
Confidence 11223332222222333333333333333332 345567777764
No 44
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-39 Score=325.84 Aligned_cols=330 Identities=18% Similarity=0.170 Sum_probs=239.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHH-HHh-cCCccCh-HhhHHHHhhhCCcH---hHHHHHHHHH
Q 013198 105 YGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQG-LID-GFNMDDA-LEVKNIERVTNHDV---KAVEYFLKQK 178 (448)
Q Consensus 105 ~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~-~~~-~~~~~d~-~~i~~~e~~t~hDv---~ave~~L~e~ 178 (448)
..+++.++.|-+|-+.+=. ++|.+|+.-+++|-+.++ +++ .+. +.| -.+.+..+.|-+.. .-+-..--|.
T Consensus 44 p~~i~a~~~VKKAaAlaN~---elg~l~~~~~~aIv~ACDeil~Gk~~-dqFvvD~~QGGAGTS~NMN~NEVIAN~AlE~ 119 (471)
T COG1027 44 PEFIRAMAMVKKAAALANK---ELGALPKEIADAIVKACDEILDGKCH-DQFVVDVYQGGAGTSTNMNANEVIANRALEL 119 (471)
T ss_pred HHHHHHHHHHHHHHHHhhh---hhCCCCHHHHHHHHHHHHHHHcCccc-cccceeccccCCCccccccHHHHHHHHHHHH
Confidence 5689999999998777666 699999877777533322 222 111 011 11123333333322 1122223345
Q ss_pred hccCcc---cccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCCCccccch
Q 013198 179 CQSQPE---IAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTL 255 (448)
Q Consensus 179 ~g~~~~---~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~P~T~ 255 (448)
+|..-+ .-...++|++++|+||+.+|+.++.+...+.+ |.+.+..|++++..|+++|++++++||||+|||+|+|+
T Consensus 120 lG~~KGeY~~~hPndhVNmsQSTND~yPTa~ria~~~~l~~-L~~al~~L~~af~~Ka~EF~~ilKmGRTqLQDAvPmtl 198 (471)
T COG1027 120 LGHEKGEYQYLHPNDHVNMSQSTNDAYPTAFRIAVYKSLRK-LIDALEDLIEAFERKAKEFADILKMGRTQLQDAVPMTL 198 (471)
T ss_pred hcCCCCceeeeCCccccchhhcccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhcChhhhcccccchh
Confidence 553100 01235679999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHccc----ccccccccccc-cccccccCCCCChhHHHHHHHHhcCCCCCCCCC---cccchh
Q 013198 256 GKEISVFAIRLGRERQEISQVE----IMGKFAGAVGN-YNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT---QIETHD 327 (448)
Q Consensus 256 G~~la~~~~~L~R~~~rL~~~~----~lg~lgGAvGT-~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~---~i~~rD 327 (448)
|++|.+|+..|.|+++||.++. .+.-.|+|+|| .|++. .|. +.+.+.+++..|++..+..+ +++..|
T Consensus 199 GqEF~Afa~~l~ed~~ri~~~~~~l~evNlGgTAiGTGiNa~~-~Y~----~~vv~~l~evtg~~~~~A~~Lieatq~~~ 273 (471)
T COG1027 199 GQEFGAFAVALKEDIKRIYRAAELLLEVNLGGTAIGTGINAPK-GYI----ELVVKKLAEVTGLPLVPAENLIEATQDTG 273 (471)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeeccCcCCCh-hHH----HHHHHHHHHHhCCCCccchhHHHHHhccc
Confidence 9999999999999999999875 22222588999 88764 233 45678999999999865432 677899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHhh-cC
Q 013198 328 YMAKLFYAFVRFNNILIDFDRDVWGYIS---LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM-KL 403 (448)
Q Consensus 328 ~~~el~~~la~~~~~L~kia~Dl~~~~s---~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~~-~l 403 (448)
.++++++++..++..|+|||+|+|+++| .|+.|+.+|+.|.||||||+|+||+..|.+-. .|-.++|.=.. .+
T Consensus 274 afv~vsg~lk~~Av~LsKI~NDlRLLsSGPr~Gl~EI~LP~~Q~GSSIMPgKVNPVipEvvnQ---vcf~ViGnD~tit~ 350 (471)
T COG1027 274 AFVMVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLPAVQAGSSIMPGKVNPVIPEVVNQ---VCFKVIGNDTTITM 350 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCCccCcccccCCCCCCCCCCCCCCcCchhHHHHHH---HHHHHhcchHHHHH
Confidence 9999999999999999999999999999 89999999999999999999999999999874 56666665211 11
Q ss_pred C--CcccCCCCcchhhhhhhhhhHHHHHHHHHHHH-hccccceeCcC
Q 013198 404 P--ISRWQRDLTDSTVLRNMGGGLGHSLLAYKSAL-QGIAKLQVLYK 447 (448)
Q Consensus 404 ~--~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~-~~l~~L~Vn~e 447 (448)
. .+..|...-+.-....+++.+.....+...+. ++|.+++.|+|
T Consensus 351 AaeaGQLqLNvmePvI~~~l~~Si~iL~na~~~l~ekcI~gItaN~e 397 (471)
T COG1027 351 AAEAGQLQLNVMEPVIAYALFESISILTNACRNLREKCIDGITANEE 397 (471)
T ss_pred HHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHH
Confidence 1 11122222222222345555555555554444 48889988875
No 45
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
Probab=100.00 E-value=1.1e-34 Score=277.83 Aligned_cols=201 Identities=29% Similarity=0.340 Sum_probs=165.2
Q ss_pred HHHHHHHHhccCcccccccCcc-----ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccc
Q 013198 171 VEYFLKQKCQSQPEIAKVLEFF-----HFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRT 245 (448)
Q Consensus 171 ve~~L~e~~g~~~~~~~~~~~i-----H~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRT 245 (448)
+|+.|.+.++. +.++.. |+|+|+||+.+|+.++++|+++.+ +.+.+..+++++..+|++|++++|||||
T Consensus 16 i~~~L~~~~~~-----~~~~~~~~~~~h~g~s~~d~~~t~~~~~~~~~l~~-l~~~l~~~~~~l~~~a~~~~~~~~~~~t 89 (231)
T cd01594 16 VEEVLAGRAGE-----LAGGLHGSALVHKGRSSNDIGTTALRLALRDALDD-LLPLLKALIDALALKAEAHKGTVMPGRT 89 (231)
T ss_pred HHHHHHHHHHH-----HhccccCCCCCCCCCCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCEeeccc
Confidence 55666666654 344444 999999999999999999999996 9999999999999999999999999999
Q ss_pred cCCCccccchhhHHHHHHHHHHHHHHHHHcccccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCCCcccc
Q 013198 246 HGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIET 325 (448)
Q Consensus 246 H~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~~i~~ 325 (448)
|+|+|+|+|+|+++++|.+.|.|+++||.++
T Consensus 90 h~q~A~p~t~g~~~~~~~~~l~~~~~rL~~~------------------------------------------------- 120 (231)
T cd01594 90 HLQDAQPVTLGYELRAWAQVLGRDLERLEEA------------------------------------------------- 120 (231)
T ss_pred ccccCccccHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence 9999999999999999999999999999876
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHhhcC
Q 013198 326 HDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKL 403 (448)
Q Consensus 326 rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~~~l 403 (448)
+++++++.++.++.+|+||++|++.|.+ ++.+.++...+++|||+||||+||+.+|.+++... ...+.....+
T Consensus 121 --~~~~~~~~l~~~~~~l~r~a~d~~~~~~~~~~~~~~~~~~~~~gSS~mp~k~Np~~~e~~~~~~~---~~~~~~~~~~ 195 (231)
T cd01594 121 --AVAEALDALALAAAHLSKIAEDLRLLLSGEFGELGEPFLPGQPGSSIMPQKVNPVAAELVRGLAG---LVIGNLVAVL 195 (231)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeCccCCCCCCCcCCCCCCCCHHHHHHHHHHH---HHHhhHHHHH
Confidence 8899999999999999999999999877 55555433337899999999999999999998544 5555544333
Q ss_pred ---CCcccCCCCcchhhhh-hhhhhHHHHHHHH
Q 013198 404 ---PISRWQRDLTDSTVLR-NMGGGLGHSLLAY 432 (448)
Q Consensus 404 ---~~~~~eRDl~ds~~~r-~l~~~l~~~~~al 432 (448)
... +++|.+|+...+ .+...+..+..++
T Consensus 196 ~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~l 227 (231)
T cd01594 196 TALKGG-PERDNEDSPSMREILADSLLLLIDAL 227 (231)
T ss_pred HHHhcc-cccccccCHHHHHHHHHHHHHHHHHH
Confidence 333 778888888776 3334444444433
No 46
>KOG1317 consensus Fumarase [Energy production and conversion]
Probab=100.00 E-value=4.6e-34 Score=280.01 Aligned_cols=203 Identities=24% Similarity=0.258 Sum_probs=181.4
Q ss_pred cCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCCCccccchhhHHHHHHHHHHH
Q 013198 189 LEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGR 268 (448)
Q Consensus 189 ~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R 268 (448)
..+++..+||||.++|++++..-..+...|.|.|..|.++|..++.+|+|++++||||.|+|.|.|+|++|++|.+.+..
T Consensus 155 NdHvN~SQSSNDTFPtamHIa~~~ei~~~L~P~l~~L~~aL~aKs~EfkdIiKIGRTHtqDAvPLTLGQEFsgY~qQ~~n 234 (487)
T KOG1317|consen 155 NDHVNKSQSSNDTFPTAMHIAAATEINSRLIPALTNLRDALEAKSKEFKDIIKIGRTHTQDAVPLTLGQEFSGYVQQVTN 234 (487)
T ss_pred ccccccccccCCccchHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhcccccccccccchhhhhhhHHHHHHH
Confidence 57889999999999999999998888777999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccc----ccccccccccc-cccccccCCCCChhHHHHHHHHhcCCCCCCCCC---cccchhHHHHHHHHHHHHH
Q 013198 269 ERQEISQVE----IMGKFAGAVGN-YNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT---QIETHDYMAKLFYAFVRFN 340 (448)
Q Consensus 269 ~~~rL~~~~----~lg~lgGAvGT-~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~---~i~~rD~~~el~~~la~~~ 340 (448)
.++|+.... .+.+.|+|||| +|.- ++++ +++.++++++.||++...++ +.+.||.++|+.+++..++
T Consensus 235 gl~Rv~~~lpr~y~LA~GGTAVGTGLNTr----~GFa-eK~a~~va~ltgLpFvtApNkFEALAahDA~VE~~GalNt~A 309 (487)
T KOG1317|consen 235 GLQRVAATLPRLYQLAQGGTAVGTGLNTR----KGFA-EKIAARVAELTGLPFVTAPNKFEALAAHDAMVEVSGALNTIA 309 (487)
T ss_pred HHHHHHhhhhHHHHHhcCCcccccccccc----ccHH-HHHHHHHHHHhCCCceecccHHHHHHhhhhHHHhcccHHHHH
Confidence 999998773 45666799999 6643 4555 67889999999999854443 6778999999999999999
Q ss_pred HHHHHHHHHHHHhhh---hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHH
Q 013198 341 NILIDFDRDVWGYIS---LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFL 399 (448)
Q Consensus 341 ~~L~kia~Dl~~~~s---~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~ 399 (448)
.+|.||++||+++.| +|+.++.+|+.++||||||+|+||..+|.+.. +|.+++|.-
T Consensus 310 ~SlmKianDIRfLGSGPRcGlgEL~LPENEPGSSIMPGKVNPTQcEamTm---vcaQVMGN~ 368 (487)
T KOG1317|consen 310 VSLMKIANDIRFLGSGPRCGLGELMLPENEPGSSIMPGKVNPTQCEAMTM---VCAQVMGNH 368 (487)
T ss_pred HHHHHHhhhhhhccCCCCCCccccccCCCCCCcccCCCCCCcHHHHHHHH---HHHHHhcCc
Confidence 999999999999988 89999999999999999999999999999876 555777654
No 47
>KOG2700 consensus Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=99.81 E-value=7.7e-21 Score=194.01 Aligned_cols=348 Identities=24% Similarity=0.207 Sum_probs=277.6
Q ss_pred cccccccccccccccccCccCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHh
Q 013198 68 MSKVDSREFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLID 147 (448)
Q Consensus 68 ~~~~~~~~~~~~~~~~~sp~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~ 147 (448)
+......+++-+++.+++|.++||+.++...-.-|++.....+.+.++.||...+.+.+++-.+|...+..+.+|..+++
T Consensus 58 ~e~~s~~~~e~~d~~~l~~ee~r~~hdVmahvh~~~~~cp~aagiihlgatsc~vtdnadli~~rd~~k~i~~~l~~vId 137 (481)
T KOG2700|consen 58 EEMKSSRDIENIDFTALSPEEGRYRHDVMAHVHSFGELCPIAAGIIHLGATSCFVTDNADLIELRDASKLILPYLAGVID 137 (481)
T ss_pred HHHHhhccccccchhhcChhhhhhcccHHHHHHHHHhhcchhcceEEeeeeeeeecCCccceechhHHHHHHHHHHHHHH
Confidence 33444556777889999999999999888888899999999999999999999999887888888777777778888888
Q ss_pred cCCc-cChHhhHHHHhhhCCcHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013198 148 GFNM-DDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLI 226 (448)
Q Consensus 148 ~~~~-~d~~~i~~~e~~t~hDv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~ 226 (448)
.+.. .+.-+....+..|+|++.+++++.++.|--.+++..+-+++|+.|++-|+....-+.....++..++.+..++++
T Consensus 138 rls~~~~~~k~~~~~g~Th~q~A~l~tfgkr~~~~~qel~~~l~~f~~~~~~~~~~~~kga~gtqasf~~l~~~~~~kv~ 217 (481)
T KOG2700|consen 138 RLSQFADKYKEKPTLGRTHLQPAQLTTFGKRMCLWIQELLRDLERFHRARTDVRFRGLKGATGTQASFLSLFLGDMDKVE 217 (481)
T ss_pred HHHHHHHHhccceecccccCccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHhhcccHHHHH
Confidence 7652 222334567788999999999999999988888888889999999999999999999999999877777777777
Q ss_pred HHHHHHHHHcccceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHcccccccccccccccccccccCCCCChhHHHH
Q 013198 227 KALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITE 306 (448)
Q Consensus 227 ~aL~~lA~~~~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~~lg~lgGAvGT~~a~~~~~~~~d~~~~~~ 306 (448)
+...-.+++..=++|.-+| ||++.|.+.|.+++..+....-..+-..+.+.++++++++|.++++-.++...+|+
T Consensus 218 ~ld~Lv~k~~gf~~~~~~T-GQt~sr~~~~~~~~~la~lgat~~k~~Tdirll~~~~ev~epFea~q~gsSaMp~k---- 292 (481)
T KOG2700|consen 218 KLDSLVTKELGFVPMYIVT-GQTYSRKTDAEEVAPLASLGATAHKYATDIRLLAKFAEVEEPFEAHQIGSSAMPYK---- 292 (481)
T ss_pred HHHHHHHHHhCCCcccccc-CCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCC----
Confidence 6666666888999999999 99999999999999999888777777777888888999999988876555444432
Q ss_pred HHHHhcCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceeeccCCCCcccCCCCCCcCchHHHHhh
Q 013198 307 DFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSE 386 (448)
Q Consensus 307 ~la~~LGl~~~~~~~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~ 386 (448)
.||+. ..++..++. .+.-...+..- .++++ .-+...|+|+||||+||+.+++..
T Consensus 293 ---------rNpm~-----~E~itslar-------~l~~~v~~al~---~~~~q--w~Ertl~dSa~~rivlP~~Fl~ad 346 (481)
T KOG2700|consen 293 ---------RNPMR-----CERITSLAR-------HLRPYVTQALN---TASVQ--WHERTLDDSANRRIVLPDAFLTAD 346 (481)
T ss_pred ---------CCCch-----hHHHhHHHH-------HHHHHHHHHhh---hHHHH--HhhcccccccccceechHHHHHHH
Confidence 34442 122222211 22211121111 12222 235789999999999999999999
Q ss_pred cccc-chHHHHHHHhhcCCCcccCCCCcchhhhhhhhhhHHHHHHHHHHHHhccccceeCc
Q 013198 387 GNLG-KANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLY 446 (448)
Q Consensus 387 g~~~-la~~~~g~~~~~l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~ 446 (448)
|+++ +++...|......++.+..||..+..+.+|++.++.++..+.+...++|.+|.++.
T Consensus 347 ~~L~~~~ni~~gl~v~p~~i~r~i~~e~~~~~~eni~mAL~~~g~srq~ahe~I~~L~~~a 407 (481)
T KOG2700|consen 347 GNLGTLLNILEGLVVYPKVIERNIRDELPFMVLENIIMALVKAGLSRQEAHEGIRKLSHQA 407 (481)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9988 77877777777778998999999999999999999999999999999999988754
No 48
>PRK08937 adenylosuccinate lyase; Provisional
Probab=99.79 E-value=3.1e-19 Score=170.65 Aligned_cols=109 Identities=23% Similarity=0.245 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHhh---cCCCcccC
Q 013198 335 AFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM---KLPISRWQ 409 (448)
Q Consensus 335 ~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~~---~l~~~~~e 409 (448)
+++.++++|+|||+|+++|++ +|+++++.+.+++||||||||+||+.+|++++ +++.+.|++.. .+ ..++|
T Consensus 22 ~l~~i~~~l~ria~Dl~~~~s~e~gei~~~~~~~~~gSSiMP~K~NP~~~E~i~~---~a~~~~g~~~~~~~~~-~~~~e 97 (216)
T PRK08937 22 VLALIATSLEKFANEIRLLQRSEIREVEEPFAKGQKGSSAMPHKRNPIGSERITG---LARVLRSYLVTALENV-PLWHE 97 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccceeecccccCCCCCccCCCccCcHHHHHHHH---HHHHHHHHHHHHHHHh-HHHhc
Confidence 899999999999999999987 77888766689999999999999999999998 56677777643 33 34489
Q ss_pred CCCcchhhhh-hhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 410 RDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 410 RDl~ds~~~r-~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
||+++|+.+| .+++++..+..+++.+..++++|+||++
T Consensus 98 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~ 136 (216)
T PRK08937 98 RDLSHSSAERIALPDAFLALDYILNRFVNILENLVVFPE 136 (216)
T ss_pred cCCchhHHHhhHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 9999999988 7889999999999999999999999986
No 49
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=98.76 E-value=2.9e-09 Score=91.75 Aligned_cols=42 Identities=69% Similarity=1.051 Sum_probs=38.1
Q ss_pred cccCCCCcchhhhhhhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 406 SRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 406 ~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
+||||||+|||+.||+|++|+|++.|++.+.++|+||+||++
T Consensus 1 SR~QRDLtDSTvlRNiGva~~~sliA~~s~lkGl~Kl~vn~~ 42 (115)
T PF08328_consen 1 SRWQRDLTDSTVLRNIGVAFGHSLIAYKSLLKGLGKLEVNEE 42 (115)
T ss_dssp -STTB-THHHHHHTTHHHHHHHHHHHHHHHHHHHHTEEE-HH
T ss_pred CcccccchHHHHHHhhhHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 589999999999999999999999999999999999999975
No 50
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=25.11 E-value=3.3e+02 Score=26.90 Aligned_cols=82 Identities=21% Similarity=0.228 Sum_probs=64.6
Q ss_pred hHHHHHHHHHhccCcccccccCccc-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccC
Q 013198 169 KAVEYFLKQKCQSQPEIAKVLEFFH-FACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHG 247 (448)
Q Consensus 169 ~ave~~L~e~~g~~~~~~~~~~~iH-~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~ 247 (448)
.-||..|+++|.. ...|.| -.-++++.+..|....|-+.+.. -...+....+.+.+..
T Consensus 43 ~eiE~~Lk~KC~~------Lls~~~p~~~~~s~~l~~ak~~~L~~~l~~-ek~~~~~~k~~~~e~~-------------- 101 (238)
T PF14735_consen 43 REIEERLKKKCFS------LLSYHQPDSESSSEGLKAAKSWQLPELLRE-EKQRLEKEKAQLRELL-------------- 101 (238)
T ss_pred HHHHHHHHHHHHH------HHHHhCCCCccccchhhHhHHHhHHHHHHH-HHHHHHHHHHHHHHHH--------------
Confidence 6788999999964 555665 56677777788888888888875 7777777777777655
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHHcc
Q 013198 248 QPASPTTLGKEISVFAIRLGRERQEISQV 276 (448)
Q Consensus 248 Q~A~P~T~G~~la~~~~~L~R~~~rL~~~ 276 (448)
......++.|...|.+.++.|..+
T Consensus 102 -----~~l~~q~~~y~~vL~~cl~~L~~l 125 (238)
T PF14735_consen 102 -----VLLERQFATYYQVLLQCLQLLQKL 125 (238)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557788999999999999999886
No 51
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=24.68 E-value=2.1e+02 Score=25.01 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 013198 200 DINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDN 236 (448)
Q Consensus 200 Di~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~ 236 (448)
|.+-|-++..+|+.+. +|...+.+|.+....+-+++
T Consensus 55 DLVKtHLmfAVREEVe-~Lk~qI~eL~er~~~Le~EN 90 (123)
T KOG4797|consen 55 DLVKTHLMFAVREEVE-VLKEQIRELEERNSALEREN 90 (123)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999 69999999999888887776
No 52
>PRK15444 pduC propanediol dehydratase large subunit; Provisional
Probab=22.04 E-value=3.4e+02 Score=29.38 Aligned_cols=13 Identities=23% Similarity=0.549 Sum_probs=7.4
Q ss_pred CCCCCCCccHHHHH
Q 013198 127 EVTEVPSFSEEAKS 140 (448)
Q Consensus 127 ~~giIp~~sa~a~~ 140 (448)
++| +|+.+.++++
T Consensus 425 ~LG-lp~itDeeVe 437 (554)
T PRK15444 425 ELG-LPPITDEEVE 437 (554)
T ss_pred hcC-CCCCCHHHHH
Confidence 466 4556666643
Done!