Query 013198
Match_columns 448
No_of_seqs 217 out of 1892
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 06:02:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bhg_A Adenylosuccinate lyase; 100.0 2E-83 6.7E-88 675.1 30.9 371 74-447 2-375 (459)
2 2qga_B Adenylosuccinate lyase; 100.0 4.1E-82 1.4E-86 666.0 28.3 366 79-447 3-372 (465)
3 2ptr_A Adenylosuccinate lyase; 100.0 4.5E-78 1.5E-82 634.8 32.1 369 76-447 1-372 (462)
4 4eei_A Adenylosuccinate lyase; 100.0 3.4E-72 1.2E-76 586.2 31.2 329 88-447 2-339 (438)
5 2j91_A Adenylosuccinate lyase; 100.0 1.2E-71 4E-76 591.1 28.4 344 82-447 34-389 (503)
6 1yis_A Adenylosuccinate lyase; 100.0 2.7E-71 9.2E-76 585.6 29.1 345 82-447 6-363 (478)
7 1dof_A Adenylosuccinate lyase; 100.0 4.1E-71 1.4E-75 572.9 29.7 332 82-447 1-339 (403)
8 3c8t_A Fumarate lyase; structu 100.0 2.2E-70 7.6E-75 574.8 31.0 339 84-447 5-351 (451)
9 1q5n_A 3-carboxy-CIS,CIS-mucon 100.0 1.5E-70 5.1E-75 576.6 28.7 343 84-447 5-357 (454)
10 1c3c_A Protein (adenylosuccina 100.0 5.7E-69 1.9E-73 561.0 31.1 327 89-447 2-338 (429)
11 1re5_A 3-carboxy-CIS,CIS-mucon 100.0 7.7E-69 2.6E-73 563.1 31.3 342 84-447 3-353 (450)
12 2fel_A 3-carboxy-CIS,CIS-mucon 100.0 6.1E-69 2.1E-73 548.9 29.3 336 85-447 8-350 (359)
13 2pfm_A Adenylosuccinate lyase; 100.0 1.2E-68 4.2E-73 560.6 30.2 330 87-447 10-350 (444)
14 1k7w_A Delta 2 crystallin; eye 100.0 3.8E-65 1.3E-69 537.2 25.0 329 84-447 8-360 (468)
15 1tj7_A Argininosuccinate lyase 100.0 3.5E-64 1.2E-68 528.4 30.2 328 85-447 2-354 (457)
16 2e9f_A Argininosuccinate lyase 100.0 8.1E-64 2.8E-68 526.4 26.6 329 84-447 3-357 (462)
17 1jsw_A L-aspartase, L-aspartat 100.0 2.1E-61 7.3E-66 509.8 27.4 342 86-447 18-399 (478)
18 1fur_A Fumarase C, FUMC; hydro 100.0 6.1E-60 2.1E-64 497.3 26.0 336 94-447 25-396 (467)
19 1vdk_A Fumarase C, fumarate hy 100.0 9.1E-60 3.1E-64 496.0 25.4 322 104-447 42-396 (466)
20 1yfm_A Fumarase, YFUM; lyase, 100.0 3.7E-59 1.3E-63 492.8 23.3 324 104-447 67-421 (488)
21 3r6q_A Aspartase; aspartate am 100.0 9E-58 3.1E-62 480.3 25.9 340 86-447 18-396 (468)
22 3ocf_A Fumarate lyase:delta cr 100.0 6.5E-57 2.2E-61 474.2 25.7 345 81-447 30-416 (478)
23 4adm_A Fumarase C, fumarate hy 100.0 3.7E-56 1.3E-60 470.2 24.7 352 80-447 38-418 (495)
24 3gtd_A Fumarase C, fumarate hy 100.0 1.6E-55 5.5E-60 463.1 25.4 358 78-447 29-417 (482)
25 4hgv_A Fumarase C, fumarate hy 100.0 5.1E-55 1.7E-59 462.0 23.6 360 77-447 39-428 (495)
26 3e04_A Fumarase, fumarate hydr 100.0 4.4E-54 1.5E-58 452.7 24.4 359 77-447 33-423 (490)
27 2wlv_A GAG polyprotein, HIV-2 23.3 48 0.0016 29.0 2.8 51 193-257 43-93 (144)
28 1l6n_A GAG polyprotein; matrix 21.7 45 0.0015 32.5 2.5 74 170-257 154-227 (289)
No 1
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Probab=100.00 E-value=2e-83 Score=675.06 Aligned_cols=371 Identities=53% Similarity=0.878 Sum_probs=336.9
Q ss_pred cccccccccccCccCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCC-CC--CCCccHHHHHHHHHHHhcCC
Q 013198 74 REFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEV-TE--VPSFSEEAKSYLQGLIDGFN 150 (448)
Q Consensus 74 ~~~~~~~~~~~sp~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~-gi--Ip~~sa~a~~~l~~~~~~~~ 150 (448)
.+|+++.||++|||+|||.+++++|+++|||++++++|++||+||+++|++ . |+ ||+.+++++++|.+.++++.
T Consensus 2 ~~~~~~~~~~~s~~~gRy~~~~~~~~~~fsd~~~~~~~l~ve~a~~~ala~---~~gi~~ip~i~~~~~~~i~~~~~~~~ 78 (459)
T 3bhg_A 2 NAMTLTALNAISPIDGRYVNKTRALSPYFSEFALTYYRLMVEIKWFESLAA---NDTIPEVPALDNKARKFLSDLISNFN 78 (459)
T ss_dssp ----CCGGGCSSTTTTTTHHHHGGGTTTSSHHHHHHHHHHHHHHHHHHHHT---CTTCTTSCCCCHHHHHHHHHHHHTCC
T ss_pred CCCCcccccccCcccccccCChHHHHHHcCHHHHHHHHHHHHHHHHHHHHh---ccCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 468889999999999999987789999999999999999999999999994 6 66 66666788778887777787
Q ss_pred ccChHhhHHHHhhhCCcHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013198 151 MDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALC 230 (448)
Q Consensus 151 ~~d~~~i~~~e~~t~hDv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~ 230 (448)
.+|++.++++|+.++|||+++|++|+++||+.++++++++|||+|||||||++|+++|++|+++.+.|.+.|.+|+++|.
T Consensus 79 ~~d~~~~~~~e~~~~~Dv~a~e~~l~e~~g~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~ 158 (459)
T 3bhg_A 79 ESEAEKIKEFEKQTNHDVKAVEYYLQDKFQENEQLKSCVAFIHFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGSIT 158 (459)
T ss_dssp HHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTSTTGGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCChHHHHHHHHHHhcccccCchhhhhhcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999865444568999999999999999999999999998239999999999999
Q ss_pred HHHHHcccceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHcccccccccccccccccccccCCCCChhHHHHHHHH
Q 013198 231 EIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVK 310 (448)
Q Consensus 231 ~lA~~~~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~ 310 (448)
++|++|++++|+||||+|||+||||||+|++|+++|.|+++||.++..+++++|||||+|++...||++||+.+++++++
T Consensus 159 ~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~GAvGT~~a~~~~~~~~~~~~~~~~~~~ 238 (459)
T 3bhg_A 159 LLGKQHADVAMLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVLIPAKFNGAVGNYNAHVAAYPEVDWRKHCANFVT 238 (459)
T ss_dssp HHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEECCCCSSSSCHHHHHHCTTSCHHHHHHHHHH
T ss_pred HHHHHccCCEeeccccCccceechHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccCcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888889999999998878999999999999999
Q ss_pred hcCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceeeccCCCCcccCCCCCCcCchHHHHhhcccc
Q 013198 311 SLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLG 390 (448)
Q Consensus 311 ~LGl~~~~~~~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~ 390 (448)
.|||..+++++|+.+||++++++++++.++++|+|||+|||+|+|.|++++.++++++||||||||+||+.+|+++|+++
T Consensus 239 ~LGl~~~~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~~~~~e~~~~~~~GSSiMP~K~NP~~~e~~~g~~~ 318 (459)
T 3bhg_A 239 SLGLSFNAYTTQIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISLGYFKQKTIAEEVGSSTMPHKVNPIDFENAEGNLG 318 (459)
T ss_dssp HTTCEECSSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEECC------CCSSCCCCCTHHHHHHHHHHH
T ss_pred HhCCCCCccccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceehccCCCCCCCCCCCCCcChHHHHHHHHHHH
Confidence 99999999988999999999999999999999999999999999988888889999999999999999999999999999
Q ss_pred chHHHHHHHhhcCCCcccCCCCcchhhhhhhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 391 KANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 391 la~~~~g~~~~~l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
+++.....+...++.++||||+++|+.+|++++++.++..+++.+.++|++|+||++
T Consensus 319 l~~~~~~~~~~~l~~~~~~rdl~~s~~~r~l~~~~~~~~~~l~~~~~~l~gl~vn~e 375 (459)
T 3bhg_A 319 LSNALFIHFANKLTQSRMQRDLSDSTVLRNLGVAFSYSLIAYHSVAKGNDKLQINKS 375 (459)
T ss_dssp HHHHHHHHHHHHTTCCSTTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHTTEEECHH
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHCcCEECHH
Confidence 888888888888887779999999999999999999999999999999999999985
No 2
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A
Probab=100.00 E-value=4.1e-82 Score=665.98 Aligned_cols=366 Identities=45% Similarity=0.719 Sum_probs=333.5
Q ss_pred ccccccCccCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCC-CCCCCccHHHHHHHHHHHhcCCccChHhh
Q 013198 79 SSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEV-TEVPSFSEEAKSYLQGLIDGFNMDDALEV 157 (448)
Q Consensus 79 ~~~~~~sp~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~-giIp~~sa~a~~~l~~~~~~~~~~d~~~i 157 (448)
+.|+++|||+|||.+++++|+.+|||++++++|++||+||++||++ . |+||+++++++.++.+++++|+.+|++++
T Consensus 3 ~~~~~~s~~~gRy~~~~~~~~~~~sd~~~~~~~i~ve~A~~~ala~---~~gii~~~~~~~i~~l~~~~~~~~~~d~~~i 79 (465)
T 2qga_B 3 EHLKNISPIDGRYKKACGELSAFFSEHALIKHRIIVEVRWLLFLNE---EELFFEKVTDHSVEVLNQIATNITDSDIARV 79 (465)
T ss_dssp CGGGCSSTTTTTTHHHHGGGGGTSSHHHHHHHHHHHHHHHHHHHHH---HTSSSCCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_pred ccccccCcccccccCCcHHHHHHhCHHHHHHHHHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHHHhhccccHHHH
Confidence 5689999999999987778999999999999999999999999995 6 99999999999888877788877788889
Q ss_pred HHHHhhhCCcHhHHHHHHHHHhccC--cccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013198 158 KNIERVTNHDVKAVEYFLKQKCQSQ--PEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKD 235 (448)
Q Consensus 158 ~~~e~~t~hDv~ave~~L~e~~g~~--~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~ 235 (448)
+++|+.++|||+++|++|+++||.. ++++++++|||+|||||||++|+++|++|+++.+.|.+.|..|+++|.++|++
T Consensus 80 ~~~e~~~~hDV~a~e~~l~e~~g~~~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~~A~~ 159 (465)
T 2qga_B 80 KAIEEETNHDVKAVEYFVKEKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAVE 159 (465)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHTSCCHHHHHHGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccCCChHHHHHHHHHHhcccccccchhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999842 22235799999999999999999999999999823999999999999999999
Q ss_pred cccceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHcccccccccccccccccccccCCCCChhHHHHHHHHh-cCC
Q 013198 236 NANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKS-LGL 314 (448)
Q Consensus 236 ~~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~-LGl 314 (448)
|++++|+||||+|||+||||||+|++|+++|.|+++||.++..+++++|||||+|++...||++||+.+.+++++. |||
T Consensus 160 ~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~GAvGT~~a~~~~~p~~d~~~~~~~~~~~~LGl 239 (465)
T 2qga_B 160 YSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVKVCAKFNGAVGNFNAHKVASKDTDWVNTIGLFLKKHFNL 239 (465)
T ss_dssp TTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHSCCEECCCCTTSSCHHHHHHCTTCCHHHHHHHHHHHHHCC
T ss_pred ccCcEeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcCccccccccCcccHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999987788899999999988789999999999999876 999
Q ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHH
Q 013198 315 SFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANE 394 (448)
Q Consensus 315 ~~~~~~~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~ 394 (448)
+.+++++|+.+||++++++++++.++++|+|||+|||+|++.|++++.++++++|||||||||||+.+|+++|++++++.
T Consensus 240 ~~~~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~~~~~e~~~~~~~GSSiMP~K~NP~~~e~~~g~~~~~~~ 319 (465)
T 2qga_B 240 TYSIYCTQIQDHDYICELCDGLARANGTLIDLCVDIWLYISNNLLKLKVKEKEVGSSTMPHKVNPIDFENAEGNLHIANA 319 (465)
T ss_dssp EECCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEC-------CCSCTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeeeCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 99888889999999999999999999999999999999999888888899999999999999999999999999998888
Q ss_pred HHHHHhhcCCCcccCCCCcchhhhhhhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 395 DLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 395 ~~g~~~~~l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
....+...++.++||||+++|+++|++++++.++..+++.+.++|++|+||++
T Consensus 320 ~~~~~~~~l~~~~~erdl~~s~~~r~l~~~~~~~~~~l~~~~~~l~~l~vn~~ 372 (465)
T 2qga_B 320 FFKLFSSKLPTSRLQRDLSDSTVLRNIGSSLAYCLIAYKSVLKGLNKIDIDRR 372 (465)
T ss_dssp HHHHHHHHTTCCSTTBCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHEEECHH
T ss_pred HHHHHHHhhcchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 87777777876679999999999999999999999999999999999999985
No 3
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Probab=100.00 E-value=4.5e-78 Score=634.80 Aligned_cols=369 Identities=61% Similarity=0.993 Sum_probs=331.3
Q ss_pred cccccccccCccCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCC-CC--CCCccHHHHHHHHHHHhcCCcc
Q 013198 76 FELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEV-TE--VPSFSEEAKSYLQGLIDGFNMD 152 (448)
Q Consensus 76 ~~~~~~~~~sp~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~-gi--Ip~~sa~a~~~l~~~~~~~~~~ 152 (448)
|+++.||++|||+|||.+++++|+++|||++++++|++||+||+++|++ . |+ ||+.++++.++|.+.++++..+
T Consensus 1 ~~~~~~~~~s~~~gRy~~~~~~~~~~fsd~~~i~~~~~ve~A~a~ala~---~g~i~~ip~i~~~~a~~I~~~~~~i~~g 77 (462)
T 2ptr_A 1 MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAA---HAAIKEVPAFAADAIGYLDAIVASFSEE 77 (462)
T ss_dssp CCCCTTTCSSTTTTTTGGGSGGGGGTTSHHHHHHHHHHHHHHHHHHHHH---CTTCTTSCCCCHHHHHHHHHHHHTCCHH
T ss_pred CCcccccccCcccccccCchHHHHHHCCcHHHHHHHHHHHHHHHHHHHH---cCCCCCCCCCCHHHHHHHHHHHHHhccC
Confidence 4578899999999999988789999999999999999999999999995 6 44 4545567777777777777666
Q ss_pred ChHhhHHHHhhhCCcHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013198 153 DALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEI 232 (448)
Q Consensus 153 d~~~i~~~e~~t~hDv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~l 232 (448)
|++.++++|..++|||+++|+.|++++|+.+++++.++|||+|||||||++|+++|++|+++.+.|.+.|.+|+++|.++
T Consensus 78 ~~~~~~~~~~~~~~dv~av~~~l~e~~g~~g~~~~~~~~vH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~~ 157 (462)
T 2ptr_A 78 DAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGLKDL 157 (462)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHTTSHHHHTTGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CHHHHHhhccccCCCHHHHHHHHHHHhccccCCcchhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999985322234689999999999999999999999999823999999999999999
Q ss_pred HHHcccceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHcccccccccccccccccccccCCCCChhHHHHHHHHhc
Q 013198 233 AKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSL 312 (448)
Q Consensus 233 A~~~~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~L 312 (448)
|++|++++|+||||+|||+||||||||++|+++|.|+++||.++...++++|||||++++...||++||+.+++++++.|
T Consensus 158 A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~GAvGT~~~~~~~~~~~~~~~v~~~~~~~L 237 (462)
T 2ptr_A 158 AVQYRDIPLLSRTAGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSL 237 (462)
T ss_dssp HHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEECCCCTTSSCHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred HHHccCCEeeccccCeeceechHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhcchhhcccccCcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999888889999999877666788899999999999999
Q ss_pred CCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceeeccCCCCcccCCCCCCcCchHHHHhhccccch
Q 013198 313 GLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKA 392 (448)
Q Consensus 313 Gl~~~~~~~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la 392 (448)
||..|++++|+.+||++++++++++.++++|+|||+|+|+|+|.+++.+.++++++||||||||+||+.+|+++++++.+
T Consensus 238 Gl~~n~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~s~~~~~E~~~~~~~GSSiMP~K~NP~~~E~i~~~a~~v 317 (462)
T 2ptr_A 238 GIQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLS 317 (462)
T ss_dssp TCEECCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEECCCTTCCSCSSCTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCCchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhccCCCCCCcCCCCCCCCCcHHHHHHHHHHHHH
Confidence 99999998789999999999999999999999999999999985556557899999999999999999999999966644
Q ss_pred HHHHHHHhhcCCCcccCCCCcchhhhhhhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 393 NEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 393 ~~~~g~~~~~l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
......+..++|.++||||+++|+.+|++++++..+..+++.+.++|++|+||++
T Consensus 318 ~g~~~~~~~~~~~~~~erd~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~e 372 (462)
T 2ptr_A 318 NAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRD 372 (462)
T ss_dssp HHHHHHHHHHTTCCSTTCCTHHHHHGGGHHHHHHHHHHHHHHHHHHHHHEEECHH
T ss_pred HHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHH
Confidence 4444455567887779999999999999999999999999999999999999986
No 4
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=100.00 E-value=3.4e-72 Score=586.23 Aligned_cols=329 Identities=25% Similarity=0.321 Sum_probs=281.8
Q ss_pred CcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHHhhhCCc
Q 013198 88 DGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHD 167 (448)
Q Consensus 88 d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e~~t~hD 167 (448)
..||+ +++|+.+|||+++++.|++||.||+++|+ + |+||+++++++ .+.+ ++ |+++++++|+.++||
T Consensus 2 ~~ry~--~~~m~~~fs~~~~~~~~l~ve~Ala~a~~---~-GlIp~~~~~~i---~~~~-~~---d~~~i~~~e~~~~hd 68 (438)
T 4eei_A 2 IKRYD--VAEISKIWADENKYAKMLEVELAILEALE---D-RMVPKGTAAEI---RARA-QI---RPERVDEIEKVTKHD 68 (438)
T ss_dssp CGGGC--CHHHHHHHSHHHHHHHHHHHHHHHHHHGG---G-TTSCTTHHHHH---HHHC-CC---CHHHHHHHHHHHSCH
T ss_pred CcccC--cHHHHHHcChHHHHHHHHHHHHHHHHHHh---c-CCCCHHHHHHH---HhhC-CC---CHHHHHHHHHhcCCC
Confidence 46899 47999999999999999999999999999 6 99998766664 4332 33 899999999999999
Q ss_pred HhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccC
Q 013198 168 VKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHG 247 (448)
Q Consensus 168 v~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~ 247 (448)
|+++|++|+++||+ ++++|||+|||||||++|+++|++|+++.. |.+.|.+|+++|.++|++|+|++||||||+
T Consensus 69 V~a~~~~l~e~~g~-----~~~~~iH~G~SsnDv~~Ta~~L~lr~~~~~-l~~~L~~l~~~L~~~A~~~~~~~m~GrTHl 142 (438)
T 4eei_A 69 IIAFCTSIAEQFTA-----ETGKFFHFGVTSSDIIDSALSLQIRDSMSY-VIKDLEALCDSLLTKAEETKEIITMGRSHG 142 (438)
T ss_dssp HHHHHHHHHTTSCT-----TTTTTTTCSCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred HHHHHHHHHHHcCH-----HhhcccCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCcccccccC
Confidence 99999999999985 349999999999999999999999999995 999999999999999999999999999999
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCCCccc
Q 013198 248 QPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIE 324 (448)
Q Consensus 248 Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~~i~ 324 (448)
|||+||||||||++|+++|.|+++||.++. ..+++||||||+... + +.+++.+++.|||+..+.++|+.
T Consensus 143 Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lgGAvGT~~~~-------~-~~~~~~~a~~LG~~~~~~~~~v~ 214 (438)
T 4eei_A 143 MFAEPMSFGQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSGAVGNYCIL-------T-TEDEKKAADILGLPVEEVSTQVI 214 (438)
T ss_dssp EEEEEEETHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCCTTSCCSSS-------C-HHHHHHHHHHHTCCBCSSCSSSC
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCccHhhCcccc-------c-HHHHHHHHHHcCCCCCCcccccc
Confidence 999999999999999999999999999986 678889999995432 2 46789999999998777777999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHhh-
Q 013198 325 THDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM- 401 (448)
Q Consensus 325 ~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~~- 401 (448)
+||++++++++++.++++|+|||+|||+|++ +|++.++++++++||||||||+||+.+|+++| +|+.+.|++..
T Consensus 215 ~rD~~~e~~~~l~~~a~~L~kia~Di~ll~~~e~gel~~~f~~~q~GSSiMP~K~NP~~~E~i~~---~a~~v~g~~~~~ 291 (438)
T 4eei_A 215 PRDRIAKLISIHGLIASAIERLAVEIRHLHRSDVFEVYEGFSKGQKGSSTMPHKKNPISTENLTG---MARMLRSHVSIA 291 (438)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCSEECCC------------CCCCHHHHHHHH---HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeccccccCCCCCCCCCCCCCcHHHHHHHH---HHHHHHHHHHHH
Confidence 9999999999999999999999999999986 77776655689999999999999999999998 77789888754
Q ss_pred --cCCCcccCCCCcchhhhhh-hhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 402 --KLPISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 402 --~l~~~~~eRDl~ds~~~r~-l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
.+|.. ||||+++|+++|+ +++++..+..++..+.+++++|+||++
T Consensus 292 ~~~~~~~-~erdl~~~~~er~~l~~~~~~~~~~l~~~~~~l~~l~vn~e 339 (438)
T 4eei_A 292 LENCVLW-HERDISHSSAERFYLPDNFGIMVYALRRMKNTIDNLVVQRD 339 (438)
T ss_dssp HHTTCCC-TTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHH
T ss_pred Hhccchh-cCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 34544 8999999999985 456666777778899999999999986
No 5
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=100.00 E-value=1.2e-71 Score=591.06 Aligned_cols=344 Identities=20% Similarity=0.222 Sum_probs=292.9
Q ss_pred cccCccCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCC-CCCccHHHHHHHHHHHhcCCccChHhhHHH
Q 013198 82 TALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTE-VPSFSEEAKSYLQGLIDGFNMDDALEVKNI 160 (448)
Q Consensus 82 ~~~sp~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~gi-Ip~~sa~a~~~l~~~~~~~~~~d~~~i~~~ 160 (448)
.+++|+++||++ ++|+++|||+++++.|+++|+||+++++ ++|+ ||+ +++++|.+.++++ +.+.++++
T Consensus 34 ~~~spl~~ry~~--~~m~~~fS~~~~~~~~~~~e~Ala~a~~---~~Gl~i~~---e~~~~I~~~l~~i---~~~~~~~~ 102 (503)
T 2j91_A 34 SYRSPLASRYAS--PEMCFVFSDRYKFRTWRQLWLWLAEAEQ---TLGLPITD---EQIREMKSNLENI---DFKMAAEE 102 (503)
T ss_dssp SCCCHHHHTTSC--HHHHHHTSHHHHHHHHHHHHHHHHHHHH---HHTCSCCH---HHHHHHHTTSSCC---CHHHHHHH
T ss_pred cccCCcccccCC--HHHHHHhChhHHHHHHHHHHHHHHHHHH---HcCCCCCH---HHHHHHHHHHhhc---CHHHHhhh
Confidence 488999999996 5999999999999999999999999999 4899 885 5555555544444 67888888
Q ss_pred HhhhCCcHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccce
Q 013198 161 ERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANIS 240 (448)
Q Consensus 161 e~~t~hDv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~ 240 (448)
|+.++|||+++++.|+++||+ +++|||+||||||+++|+..|++|+++. .|.+.|..|+++|.++|++|++++
T Consensus 103 e~~~~hDV~a~v~~l~e~~g~------~~~~iH~G~TS~Di~dta~~L~lr~al~-~l~~~L~~L~~~L~~~A~~~~~~~ 175 (503)
T 2j91_A 103 EKRLRHDVMAHVHTFGHCCPK------AAGIIHLGATSCYVGDNTDLIILRNALD-LLLPKLARVISRLADFAKERASLP 175 (503)
T ss_dssp HHHHSCHHHHHHHHHHHHCTT------TGGGTTTTCCTHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred hhhcCCcHHHHHHHHHHHhcc------ccccccCCCCHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcE
Confidence 999999999999999999974 7999999999999999999999999999 499999999999999999999999
Q ss_pred eeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCCh---hHHHHHHHHhcCC
Q 013198 241 MLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNW---PQITEDFVKSLGL 314 (448)
Q Consensus 241 m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~---~~~~~~la~~LGl 314 (448)
||||||+|||+||||||+|++|+++|.|+++||.++. ..+.+||++||+++++..|| .|| +.+.+.+++.|||
T Consensus 176 m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~RL~~~~~~l~~lg~gG~~GT~a~~~~~f~-~D~~~~~~v~~~~a~~LGl 254 (503)
T 2j91_A 176 TLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFE-GDDHKVEQLDKMVTEKAGF 254 (503)
T ss_dssp EEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSCCTTSSCHHHHHHTT-TCHHHHHHHHHHHHHHTTC
T ss_pred eeccccCccceecchHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhhccccC-CchHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999874 23445899999888776687 788 6777999999999
Q ss_pred CC-CCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceeeccCCCCcccCCCCCCcCchHHHHhhccccchH
Q 013198 315 SF-NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKAN 393 (448)
Q Consensus 315 ~~-~~~~~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~ 393 (448)
+. ++..+|+.+||++++++++++.++++|+|||+|||+|+++|++++++..+++||||||||+||+.+|+++| +|+
T Consensus 255 ~~~~~~s~~~~~rd~~~e~~~~la~la~~L~kia~Dirll~s~~ei~ep~~~~q~GSSiMP~K~NPv~~E~i~~---~a~ 331 (503)
T 2j91_A 255 KRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCS---LAR 331 (503)
T ss_dssp SCBCSCCSSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSEECCC-----------CCCCCHHHHHHHH---HHH
T ss_pred CCCCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccceeeccccCCCCCCCCCccccCcHHHHHHHH---HHH
Confidence 95 44556899999999999999999999999999999999999999866678999999999999999999998 788
Q ss_pred HHHHHHhhcC---CCcccCCCCcchhhhhh-hhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 394 EDLSFLSMKL---PISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 394 ~~~g~~~~~l---~~~~~eRDl~ds~~~r~-l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
.++|++...+ ...+||||+.+|.++|+ ++.++..+..++..+..++++|+||++
T Consensus 332 ~v~g~~~~~~~~~~~~~~erd~~~s~~~~~~l~~~~~~~~~~l~~~~~~l~gL~vn~e 389 (503)
T 2j91_A 332 HLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPK 389 (503)
T ss_dssp HHHHTTHHHHHHHHTCCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHH
T ss_pred HHHHHHHHHHHHHccCcccccccchHHHHhhHHHHHHHHHHHHHHHHHHHcCCEECHH
Confidence 9999986433 23458999999999984 445666666667888888899999986
No 6
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.7e-71 Score=585.58 Aligned_cols=345 Identities=21% Similarity=0.186 Sum_probs=290.4
Q ss_pred cccCccCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCC--CCCccHHHHHHHHHHHhcCCccChHhhHH
Q 013198 82 TALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTE--VPSFSEEAKSYLQGLIDGFNMDDALEVKN 159 (448)
Q Consensus 82 ~~~sp~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~gi--Ip~~sa~a~~~l~~~~~~~~~~d~~~i~~ 159 (448)
++++|+++||.++ ++|+++|||+++++.|+++|+||+++++ ++|+ ||+ ++.++|.+.++++ +.+.+++
T Consensus 6 ~~~spl~~ry~~~-~~m~~~fs~~~~~~~~~~~e~Ala~a~~---~~Gl~~i~~---~~~~~I~~~l~~i---~~~~~~~ 75 (478)
T 1yis_A 6 KFESVLSTRYCKN-SPLVSILSETNKATLWRQLWIWLAEAEK---ELGLKQVTQ---DAIDEMKSNRDVF---DWPFIRS 75 (478)
T ss_dssp SCCCHHHHTTTTT-CTHHHHTSHHHHHHHHHHHHHHHHHHHH---HTTCTTSCH---HHHHHHHHTTTCC---CHHHHHH
T ss_pred cCCCCcccccCCh-HHHHHHcCchHHHHHHHHHHHHHHHHHH---HcCCCCCCH---HHHHHHHHHHHhC---CHHHHhh
Confidence 5889999999974 4499999999999999999999999999 5899 885 4444455544454 6777888
Q ss_pred HHhhhCCcHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 013198 160 IERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANI 239 (448)
Q Consensus 160 ~e~~t~hDv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt 239 (448)
+|+.++|||.+++++|++++|+ +++|||+||||||+++|+..|++|+++.. |.+.|.+|+++|.++|++|+++
T Consensus 76 ~e~~~~~DV~a~v~~l~e~~g~------~~~~iH~G~TS~Di~~ta~~L~lr~~l~~-l~~~L~~L~~~L~~~A~~~~~~ 148 (478)
T 1yis_A 76 EERKLKHDVMAHNHAFGKLCPT------AAGIIHLGATSCFVQDNADLIAYRDSIDH-ILKRFATVIDRLAAFSLKNKEV 148 (478)
T ss_dssp HHHHSSCHHHHHHHHHHHHCTT------TGGGTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCcHHHHHHHHHHhhhh------chhheeCCCchhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCC
Confidence 8999999998888899999974 79999999999999999999999999995 9999999999999999999999
Q ss_pred eeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCCh---hHHHHHHHHhcC
Q 013198 240 SMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNW---PQITEDFVKSLG 313 (448)
Q Consensus 240 ~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~---~~~~~~la~~LG 313 (448)
+||||||+|||+||||||+|++|+++|.|+++||.++. ..+.+||++||+++++..|| .|| +.+.+.+++.||
T Consensus 149 ~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~rL~~~~~~l~~lg~gg~~GT~a~~~~~f~-~d~~~~~~v~~~~a~~LG 227 (478)
T 1yis_A 149 VTVGRTHYQTASLVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKGATGTQDSFLTLFA-GDESKVEALDELVTKKAN 227 (478)
T ss_dssp EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSCTTTSSCHHHHHHTT-TCHHHHHHHHHHHHHHTT
T ss_pred eeecccCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhccchhhhcccC-cchhhHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999874 23445888999877776687 788 677799999999
Q ss_pred CCC-CCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceeeccCCCCcccCCCCCCcCchHHHHhhccccch
Q 013198 314 LSF-NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKA 392 (448)
Q Consensus 314 l~~-~~~~~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la 392 (448)
|+. ++..+|+++||++++++++++.++++|+|||+|||+|+|+|++++++.++++||||||||+||+.+|+++| +|
T Consensus 228 ~~~~~~~s~~~~~rd~~~e~~~~l~~~a~~L~kia~Di~ll~s~~el~~p~~~~q~GSSiMP~K~NP~~~E~i~~---~a 304 (478)
T 1yis_A 228 FSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAFGELLEPFEKDQIGSSAMPYKKNPMKSERCCA---LS 304 (478)
T ss_dssp CSCBCSSCSSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEECC-------------CCCCHHHHHHHH---HH
T ss_pred cCCCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeccccCCCCccccCCcccCCHHHHHHHH---HH
Confidence 995 34445899999999999999999999999999999999999998866678999999999999999999998 77
Q ss_pred HHHHHHHhhcC---CCcccCCCCcchhhhh-hhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 393 NEDLSFLSMKL---PISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 393 ~~~~g~~~~~l---~~~~~eRDl~ds~~~r-~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
+.++|++...+ ...+||||+.+|.++| .++.++..+..++..+..++++|+||++
T Consensus 305 ~~v~g~~~~~~~~~~~~~~er~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~e 363 (478)
T 1yis_A 305 RKLINAPQEALTILADQGLERTLDDSAGRRMLIPDVLLTAEALLTTLQNIFEGLSVQTD 363 (478)
T ss_dssp HHHHTSHHHHHHHHHTCCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHH
T ss_pred HHHHHhHHHHHHHhccCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHH
Confidence 79999986433 2335899999999998 4456666666667888888999999985
No 7
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1
Probab=100.00 E-value=4.1e-71 Score=572.87 Aligned_cols=332 Identities=25% Similarity=0.278 Sum_probs=277.0
Q ss_pred cccCccCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHH
Q 013198 82 TALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIE 161 (448)
Q Consensus 82 ~~~sp~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e 161 (448)
|++||+++||++ ++|+++|||++++++|++||+||+++++ ++|+||++.+++| .+. +| |++.+.+.+
T Consensus 1 m~~sp~~~ry~~--~~~~~i~sd~~~i~~~~~v~~A~a~a~~---~~Gii~~~~a~~I---~~a--~~---d~~~~~~~~ 67 (403)
T 1dof_A 1 MHVSPFDWRYGS--EEIRRLFTNEAIINAYLEVERALVCALE---ELGVAERGCCEKV---NKA--SV---SADEVYRLE 67 (403)
T ss_dssp -CCCGGGTTSSC--HHHHTTSSHHHHHHHHHHHHHHHHHHHH---HTTSSCTTHHHHH---HHC--CC---CTTTC----
T ss_pred CCCCCcccccCc--HHHHHHcChHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHH---HHC--CC---CHHHHHHHh
Confidence 568899999996 7999999999999999999999999999 5899998777665 322 34 567777888
Q ss_pred hhhCCcHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccee
Q 013198 162 RVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISM 241 (448)
Q Consensus 162 ~~t~hDv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m 241 (448)
.+++|||+++|+.|.+++| +++||+||||||+++|+++|++|+++.. |.+.|.+|+++|.++|++|++++|
T Consensus 68 ~~~~~dVia~~~~l~e~~G--------g~~vH~g~SsnD~~~Ta~~l~~r~~l~~-l~~~l~~L~~~L~~~A~~~~~~~~ 138 (403)
T 1dof_A 68 RETGHDILSLVLLLEQKSG--------CRYVHYGATSNDIIDTAWALLIRRALAA-VKEKARAVGDQLASMARKYKTLEM 138 (403)
T ss_dssp ----CHHHHHHHHHHHHHC--------CSCTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred hccCCcHHHHHHHHHHHcC--------CCcccCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCee
Confidence 8899999999999999995 4799999999999999999999999995 999999999999999999999999
Q ss_pred eccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCC
Q 013198 242 LSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNP 318 (448)
Q Consensus 242 ~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~ 318 (448)
|||||+|||+||||||||++|++.|.|+ +||.++. ..+++||||||...... ++ +.+++.+++.|||+.++
T Consensus 139 ~GrTHlQ~A~P~T~G~~~~~~~~~l~r~-~rL~~~~~~~~~~~lGgAvGt~~~~~~----~~-~~~~~~~a~~lGl~~~~ 212 (403)
T 1dof_A 139 VGRTHGQWAEPITLGFKFANYYYELYIA-CRQLALAEEFIRAKIGGAVGTMASWGE----LG-LEVRRRVAERLGLPHHV 212 (403)
T ss_dssp EEEETTEEEEEEEHHHHHHHHHHHHHHH-HHHHHHHHHHCCBCCCCTTSSCGGGGG----GH-HHHHHHHHHHTTCCBCS
T ss_pred eccccCcccccCcHHHHHHHHHHHHHHH-HHHHHHHHHhcccCccHHHhhCccccc----cc-HHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999999 9999986 67888999999554322 22 56889999999999988
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHH
Q 013198 319 YVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSF 398 (448)
Q Consensus 319 ~~~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~ 398 (448)
.+++..+||++++++++++.++++|+|||+|+++|++.|+.++..| + +||||||||+||+.+|++++ +++.+.|+
T Consensus 213 ~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~~~e~~ei~lp-~-~GSSiMP~K~NP~~~E~i~~---~a~~v~g~ 287 (403)
T 1dof_A 213 ITTQVAPRESFAVLASALALMAAVFERLAVEIRELSRPEIGEVVEG-G-GGSSAMPHKANPTASERIVS---LARYVRAL 287 (403)
T ss_dssp SCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEESC-C----------CCCHHHHHHHH---HHHHHHHH
T ss_pred CcchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCeEeCC-C-CccCCCCCCCCchHHHHHHH---HHHHHHHH
Confidence 8765559999999999999999999999999999998444444455 6 99999999999999999998 55577777
Q ss_pred Hh---hcCCCcccCCCCcchhhhh-hhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 399 LS---MKLPISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 399 ~~---~~l~~~~~eRDl~ds~~~r-~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
.. .++| ++||||+++|..+| .+++++..+..++..+.+++++|+||++
T Consensus 288 ~~~~~~~~~-~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~e 339 (403)
T 1dof_A 288 THVAFENVA-LWHERDLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEE 339 (403)
T ss_dssp HHHHHHTTC-CCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHH
T ss_pred HHHHHHcCc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHH
Confidence 64 3556 45999999999987 5679999999999999999999999985
No 8
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=100.00 E-value=2.2e-70 Score=574.84 Aligned_cols=339 Identities=17% Similarity=0.184 Sum_probs=284.4
Q ss_pred cCccCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHHhh
Q 013198 84 LSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERV 163 (448)
Q Consensus 84 ~sp~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e~~ 163 (448)
.+||++||++ ++|+.+|||++++++|++||+||+++++ ++|+||++.+++| .+.+++ ...|++.+.+.+.+
T Consensus 5 ~~~~~~ry~~--~~~~~~~sd~~~i~~~~~v~~A~a~a~~---~~Gii~~~~a~~I---~~a~~~-~~~~~~~~~~~~~~ 75 (451)
T 3c8t_A 5 SPLYGRSFAD--DKMRELFSAQSFISRCVETEVALARAQA---RLGIIPEDAAAGI---TAAART-FAPEMERLRDDTEI 75 (451)
T ss_dssp -CCSSCCCSC--HHHHHHTSHHHHHHHHHHHHHHHHHHHH---HTTSSCHHHHHHH---HHHHHH-CCCCHHHHHHHHHH
T ss_pred CCccccccCc--HHHHHHcCCHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHH---HHHhhh-cCCCHHHHHHHhhc
Confidence 4689999996 6999999999999999999999999999 4899997666664 443331 22367888888889
Q ss_pred hCCcHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeec
Q 013198 164 TNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLS 243 (448)
Q Consensus 164 t~hDv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~g 243 (448)
++|||+++|+.|.+++|+ .+++||+|||||||++|+++|++|+++.. |.+.|..|+++|.++|++|++++|||
T Consensus 76 ~~~dVia~~~~l~e~~g~------~g~~vH~g~SsnDv~~Ta~~L~lr~~l~~-l~~~l~~L~~~L~~~A~~~~~~~~~G 148 (451)
T 3c8t_A 76 VGYPILPLVEQLSAHAGE------AGKYLHWGATTQDIMDTATVLQIRDGLAL-ISRRIESVRKALAALARNHRDTPMAG 148 (451)
T ss_dssp HSSSHHHHHHHHHHHHGG------GGGGSSSSCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred CCCcHHHHHHHHHHHccc------ccccccCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCceeec
Confidence 999999999999999985 57999999999999999999999999995 99999999999999999999999999
Q ss_pred cccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCC
Q 013198 244 RTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV 320 (448)
Q Consensus 244 RTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~ 320 (448)
|||+|||+||||||||++|+++|.|+++||.++. ..+++||||||+...+ .++ +.+++.+++.|||+.++.+
T Consensus 149 rTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAvGT~~~~~----~~~-~~~~~~~a~~LGl~~~~~~ 223 (451)
T 3c8t_A 149 RTHLQHALPVTFGYKAAVWLSAFDRHAARLEEISPRVLVVEFSGASGTLASLG----TRG-LDVQRELARELNLGVPSIT 223 (451)
T ss_dssp EETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCBCCCCCTTSSCGGGT----TCH-HHHHHHHHHHHTCBCCSSC
T ss_pred ccCCCCceeehHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhcCcccc----ccc-HHHHHHHHHHhCCCCCCCC
Confidence 9999999999999999999999999999999986 6788899999965443 233 6788999999999998877
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHH
Q 013198 321 TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSF 398 (448)
Q Consensus 321 ~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~ 398 (448)
+++ +||++++++++++.++++|+|||+||++|++ +|++.++..++++||||||||+||+.+|++++ +|+.++|+
T Consensus 224 ~~~-~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~---~a~~v~g~ 299 (451)
T 3c8t_A 224 WHS-ARDAVAETVQFLALVSGSLGKLAMDISIMMTTELGEVAEPFVRHRGASSTMPQKQNPVSCELILA---GARIVRNH 299 (451)
T ss_dssp CSS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECC---------------CCHHHHHHHH---HHHHHHHH
T ss_pred Ccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccCCCCCCCCCCCcCCHHHHHHHH---HHHHHHHH
Confidence 655 9999999999999999999999999999998 55455433348899999999999999999998 67799998
Q ss_pred HhhcC--CCcccCCCCcchhhhhh-hhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 399 LSMKL--PISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 399 ~~~~l--~~~~~eRDl~ds~~~r~-l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
....+ ...+||||+++|..+|+ +++++..+..++..+.+++++|+||++
T Consensus 300 ~~~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~e 351 (451)
T 3c8t_A 300 ATSMLDAMIHDFERATGPWHLEWSAVPEGFAVASGILYQAEFMLGGLQVFPD 351 (451)
T ss_dssp HHHHHHHTCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHH
T ss_pred HHHHHhcCchhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcCEECHH
Confidence 86543 23459999999999875 468999999999999999999999986
No 9
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=100.00 E-value=1.5e-70 Score=576.61 Aligned_cols=343 Identities=19% Similarity=0.214 Sum_probs=285.9
Q ss_pred cCccCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHH-HHHHhcCCccChHhhHHHHh
Q 013198 84 LSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYL-QGLIDGFNMDDALEVKNIER 162 (448)
Q Consensus 84 ~sp~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l-~~~~~~~~~~d~~~i~~~e~ 162 (448)
..+|++||++ ++|+.+|||++++++|++||+||+++++ ++|+||++.+++|.+. .++..+| |++.+...+.
T Consensus 5 ~~~~~~ry~~--~~~~~~~sd~~~i~~~~~v~~A~a~a~~---~~Gii~~~~a~~I~~a~~~i~~~~---~~~~~~~~~~ 76 (454)
T 1q5n_A 5 SQLYASLFYQ--RDVTEIFSDRALVSYMVEAEVALAQAQA---QVGVIPQSAATVIQRAAKTAIDKI---DFDALATATG 76 (454)
T ss_dssp -CTTHHHHSC--HHHHHHTSHHHHHHHHHHHHHHHHHHHH---HTTSSCHHHHHHHHHHHTTHHHHC---CHHHHHHHHH
T ss_pred CCccccccCc--HHHHHHcCcHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHhhhcC---CHHHHHHHhh
Confidence 4589999996 6999999999999999999999999999 4899998666665332 2222355 5777788888
Q ss_pred hhCCcHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceee
Q 013198 163 VTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISML 242 (448)
Q Consensus 163 ~t~hDv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~ 242 (448)
+++|||+++|+.|.+++|.. .++.++|||+|||||||++|+++|++|+++.. |.+.|..|+++|.++|++|++++||
T Consensus 77 ~~~~dVia~~~~l~e~~g~~--~g~~~~~vH~g~SsnD~~~Ta~~L~~r~~l~~-l~~~l~~L~~~L~~~A~~~~~~~~~ 153 (454)
T 1q5n_A 77 LAGNIAIPFVKQLTAIVKDA--DEDAARYVHWGATSQDILDTACILQCRDALAI-VQNQVQQCYETALSQAQTYRHQVMM 153 (454)
T ss_dssp HHSSSHHHHHHHHHHHHHTT--CTTGGGGTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred ccCCcHHHHHHHHHHHhccc--cCCccccccCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCceee
Confidence 89999999999999999521 11478999999999999999999999999995 9999999999999999999999999
Q ss_pred ccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCC
Q 013198 243 SRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPY 319 (448)
Q Consensus 243 gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~ 319 (448)
||||+|||+||||||||++|+++|.|+++||.++. ..+++||||||....+ .++ +.+++.+++.|||+.++.
T Consensus 154 GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAvGT~~~~~----~~~-~~~~~~~a~~LG~~~~~~ 228 (454)
T 1q5n_A 154 GRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGGAVGSLASLQ----DQG-SIVVEAYAKQLKLGQTAC 228 (454)
T ss_dssp EEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCCTTSSCGGGT----TCH-HHHHHHHHHHHTCBCCSS
T ss_pred ccccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchHhhcCcccc----ccc-HHHHHHHHHHhCcCCCCC
Confidence 99999999999999999999999999999999986 6788899999965442 233 678899999999999887
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHH
Q 013198 320 VTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLS 397 (448)
Q Consensus 320 ~~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g 397 (448)
++++ +||++++++++++.++++|+|||+||++|++ +|++.++..++++||||||||+||+.+|++++ +|+.++|
T Consensus 229 ~~~~-~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~---~a~~v~g 304 (454)
T 1q5n_A 229 TWHG-ERDRIVEIASVLGIITGNVGKMARDWSLMMQTEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLA---AANRVPA 304 (454)
T ss_dssp CCSS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCC-------------CCCHHHHHHHH---HHHHHHH
T ss_pred CCcc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccccCCCCCccCCCCCCCHHHHHHHH---HHHHHHH
Confidence 7655 9999999999999999999999999999998 45455433348899999999999999999998 6779998
Q ss_pred HHhhc---CCCcccCCCCcchhhhhh-hhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 398 FLSMK---LPISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 398 ~~~~~---l~~~~~eRDl~ds~~~r~-l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
+.... ++ .+||||+++|..+|+ +++++..+..++..+.+++++|+||++
T Consensus 305 ~~~~~~~~~~-~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~e 357 (454)
T 1q5n_A 305 LMSSIYQSMV-QEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAE 357 (454)
T ss_dssp HHHHHHHTTC-CCTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHH
T ss_pred HHHHHHHhcc-chhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHH
Confidence 88653 45 459999999999874 469999999999999999999999985
No 10
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=100.00 E-value=5.7e-69 Score=561.00 Aligned_cols=327 Identities=24% Similarity=0.300 Sum_probs=285.7
Q ss_pred cCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHHhhhCCcH
Q 013198 89 GRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDV 168 (448)
Q Consensus 89 ~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e~~t~hDv 168 (448)
+||++ ++|+.+|||++++++|++||+||+++++ ++|+||++.+++| .+.+ .| |++.+.+.+.+++|||
T Consensus 2 ~ry~~--~~~~~~~sd~~~i~~~~~v~~A~a~a~~---~~Gii~~~~a~~I---~~a~-~~---d~~~i~~~~~~~~~dV 69 (429)
T 1c3c_A 2 ERYSL--SPMKDLWTEEAKYRRWLEVELAVTRAYE---ELGMIPKGVTERI---RNNA-KI---DVELFKKIEEKTNHDV 69 (429)
T ss_dssp GGGCC--TTHHHHTSHHHHHHHHHHHHHHHHHHHH---HTTSSCTTHHHHH---HHHC-CC---CHHHHHHHHHHHCCHH
T ss_pred CCccc--HHHHHHcChHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHH---HHhC-CC---CHHHHHHHHhccCCCh
Confidence 48996 6999999999999999999999999999 5899998777775 3332 44 6888888888999999
Q ss_pred hHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCC
Q 013198 169 KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQ 248 (448)
Q Consensus 169 ~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q 248 (448)
+++|+.|.+++|+ .+++||+||||||+++|+++|++|+++.. |.+.|..|+++|.++|++|++++||||||+|
T Consensus 70 ia~~~~l~e~~g~------~g~~vH~g~SsnD~~~Ta~~l~lr~~~~~-l~~~l~~l~~~L~~~A~~~~~~~~~GrTHlQ 142 (429)
T 1c3c_A 70 VAFVEGIGSMIGE------DSRFFHYGLTSSDVLDTANSLALVEAGKI-LLESLKEFCDVLWEVANRYKHTPTIGRTHGV 142 (429)
T ss_dssp HHHHHHHHHHHGG------GGGGTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTCEEEEEETTE
T ss_pred HHHHHHHHHHcCc------ccccccCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCeeecCcCCC
Confidence 9999999999985 58999999999999999999999999995 9999999999999999999999999999999
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCC-Cccc
Q 013198 249 PASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV-TQIE 324 (448)
Q Consensus 249 ~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~-~~i~ 324 (448)
||+||||||||++|+++|.|+++||.++. ..+++||||||+... | +.+++.+++.|||+.++.+ +++
T Consensus 143 ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAvGt~~~~----~----~~~~~~~a~~LGl~~~~~~d~~~- 213 (429)
T 1c3c_A 143 HAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISGAVGNYANV----P----PEVEEKALSYLGLKPEPVSTQVV- 213 (429)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCTTSSCSSS----C----HHHHHHHHHHTTCEECSSCSSSC-
T ss_pred cCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhcCCccC----C----HHHHHHHHHHcCCCCCCCCcCcc-
Confidence 99999999999999999999999999986 677889999995432 2 4578999999999988776 655
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHh--
Q 013198 325 THDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLS-- 400 (448)
Q Consensus 325 ~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~-- 400 (448)
+||++++++++++.++++|+|||+||++|++ +|++.++..++++||||||||+||+.+|++++ +++.+.|+..
T Consensus 214 ~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~~~e~~El~~p~~~~q~GSSiMP~K~NP~~~E~i~~---~a~~v~g~~~~~ 290 (429)
T 1c3c_A 214 PRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTG---LSRMMRAYVDPS 290 (429)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEECCCCC-----CCCTTCCCCHHHHHHHH---HHHHHHHTHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccccCCCcCCCCCCCCCcHHHHHHHH---HHHHHHHHHHHH
Confidence 9999999999999999999999999999998 55555544448999999999999999999998 5557777764
Q ss_pred -hcCCCcccCCCCcchhhhhhh-hhhHHHHHHHHHHHHhccccceeCcC
Q 013198 401 -MKLPISRWQRDLTDSTVLRNM-GGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 401 -~~l~~~~~eRDl~ds~~~r~l-~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
.++| ++||||+++|.++|++ ++++..+..++..+.+++++|+||++
T Consensus 291 ~~~~~-~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~e 338 (429)
T 1c3c_A 291 LENIA-LWHERDISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEE 338 (429)
T ss_dssp HHTTC-CSTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHH
T ss_pred HhcCC-ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHCcCeeCHH
Confidence 3556 4599999999999854 68999999999999999999999986
No 11
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=100.00 E-value=7.7e-69 Score=563.05 Aligned_cols=342 Identities=20% Similarity=0.203 Sum_probs=283.5
Q ss_pred cCccCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHHhh
Q 013198 84 LSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERV 163 (448)
Q Consensus 84 ~sp~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e~~ 163 (448)
.+|++ ||.+ +++|+.+|||++++++|++||+||+++++ ++|+||++.+++ |.+.++. ...|++.+.+.+.+
T Consensus 3 ~~~~~-ry~~-~~~~~~i~s~~~~i~~~~~v~~A~a~a~~---~~G~i~~~~a~~---I~~a~~~-~~f~~~~~~~~~~~ 73 (450)
T 1re5_A 3 NQLFD-AYFT-APAMREIFSDRGRLQGMLDFEAALARAEA---SAGLVPHSAVAA---IEAACQA-ERYDTGALANAIAT 73 (450)
T ss_dssp CCTTH-HHHS-CHHHHHHTSHHHHHHHHHHHHHHHHHHHH---TTTSSCHHHHHH---HHHHCCG-GGSCHHHHHHHHHH
T ss_pred Ccchh-hccC-CHHHHHHcCcHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHH---HHHHHhc-CCCCHHHHHHHHhc
Confidence 45677 9997 68999999999999999999999999999 599999755554 4443321 12367888888888
Q ss_pred hCCcHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeec
Q 013198 164 TNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLS 243 (448)
Q Consensus 164 t~hDv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~g 243 (448)
++|||+++|+.|++++|.. ++..++|||+||||||+++|+++|++|+++.. |.+.|..|+++|.++|++|++++|||
T Consensus 74 ~~~dV~a~~~~l~e~~g~~--~~~~~~~vh~g~SsnD~~~Ta~~l~lr~~l~~-l~~~l~~L~~~L~~~A~~~~~~~~~G 150 (450)
T 1re5_A 74 AGNSAIPLVKALGKVIATG--VPEAERYVHLGATSQDAMDTGLVLQLRDALDL-IEADLGKLADTLSQQALKHADTPLVG 150 (450)
T ss_dssp HSSSHHHHHHHHHHHHHHH--CGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred cCccHHHHHHHHHHHhCCC--CCcccccccCCCChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCeeec
Confidence 9999999999999999820 00238999999999999999999999999995 99999999999999999999999999
Q ss_pred cccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCC
Q 013198 244 RTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV 320 (448)
Q Consensus 244 RTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~ 320 (448)
|||+|||+||||||||++|++.|.|+++||.++. ..+++||||||..... |+ +..+.+.+++.|||+.++.+
T Consensus 151 rTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGGAvGt~~~~~---~~--~~~~~~~la~~LG~~~~~~~ 225 (450)
T 1re5_A 151 RTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGGASGSLAALG---SK--AMPVAEALAEQLKLTLPEQP 225 (450)
T ss_dssp EETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCCTTSSCGGGG---GG--HHHHHHHHHHHHTCBCCSSC
T ss_pred cccCccCccCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhcCCcccC---cc--hHHHHHHHHHHhCcCCCCcc
Confidence 9999999999999999999999999999999986 6778889999955432 22 45788999999999998875
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHH
Q 013198 321 TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSF 398 (448)
Q Consensus 321 ~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~ 398 (448)
++.+||++++++++++.++++|+|||+||++|++ +|++.++..++++||||||||+||+.+|++++ ++..+.|+
T Consensus 226 -~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~~El~~p~~~~q~GSSiMP~K~NP~~~E~i~~---~a~~v~g~ 301 (450)
T 1re5_A 226 -WHTQRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIG---AATRVPGL 301 (450)
T ss_dssp -CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCCCC----------CCCCHHHHHHHH---HHHHHHHH
T ss_pred -cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceeecccccCCCccccCCCCcCCHHHHHHHH---HHHHHHHH
Confidence 6889999999999999999999999999999998 55555543348999999999999999999999 55577777
Q ss_pred Hh---hcCCCcccCCCCcchhhhhh-hhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 399 LS---MKLPISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 399 ~~---~~l~~~~~eRDl~ds~~~r~-l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
.. .++|. +||||+++|..+|+ ++.++..+..++..+.+++++|+||++
T Consensus 302 ~~~~~~~~~~-~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~e 353 (450)
T 1re5_A 302 LSTLFAAMPQ-EHERSLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAA 353 (450)
T ss_dssp HHHHHHTCCC-CTTBCSSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHCEECHH
T ss_pred HHHHHHhChh-hccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcCEECHH
Confidence 64 45676 59999999999884 556667777778899999999999985
No 12
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A
Probab=100.00 E-value=6.1e-69 Score=548.91 Aligned_cols=336 Identities=18% Similarity=0.152 Sum_probs=281.7
Q ss_pred CccCcC-CCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHHhh
Q 013198 85 SPLDGR-YWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERV 163 (448)
Q Consensus 85 sp~d~r-y~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e~~ 163 (448)
+|+-+| |+ .++|+.+|||++++++|++||+||+++++ ++|+||++.+++ |.+.++++. .|++.+.+.+..
T Consensus 8 ~~l~~~~~~--~~~m~~~fs~~~~i~~~~~ve~A~a~a~~---~~G~i~~~~a~~---I~~~~~~i~-~~~~~~~~~~~~ 78 (359)
T 2fel_A 8 HPFLSGLFG--DSEIIELFSAKADIDAMIRFETALAQAEA---EASIFADDEAEA---IVSGLSEFA-ADMSALRHGVAK 78 (359)
T ss_dssp CTTTHHHHC--CHHHHGGGSHHHHHHHHHHHHHHHHHHHH---HTTSSCHHHHHH---HHHHHHTCC-CCHHHHHHHHHH
T ss_pred ccccccccC--CHHHHHHcCcHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHH---HHHHHHhcc-ccHHHHHhhccc
Confidence 455555 56 36999999999999999999999999999 589999644444 555555443 357777778888
Q ss_pred hCCcHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeec
Q 013198 164 TNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLS 243 (448)
Q Consensus 164 t~hDv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~g 243 (448)
.+|++.++++.|.+.+|+ +.++|||+|+|||||++|+++|++|+++.. |.+.|.+|+++|.++|++|++++|+|
T Consensus 79 ~~~~~~~~~~~l~~~~g~-----~~~~~vH~G~SsnDv~~Ta~~l~lr~~l~~-l~~~L~~l~~~L~~~A~~~~~~~~~G 152 (359)
T 2fel_A 79 DGVVVPELIRQMRAAVAG-----QAADKVHFGATSQDVIDTSLMLRLKMAAEI-IATRLGHLIDTLGDLASRDGHKPLTG 152 (359)
T ss_dssp HSSSHHHHHHHHHTTSCG-----GGGGGTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCcHHHHHHHHHHHcCc-----cccchhcCCCCHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcEeec
Confidence 999999999999998874 478999999999999999999999999995 99999999999999999999999999
Q ss_pred cccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCC
Q 013198 244 RTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV 320 (448)
Q Consensus 244 RTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~ 320 (448)
|||+||||||||||+|++|+++|.|+++||.++. ..+++|||+||+++++ .+|+.+++.+++.|||+.++ +
T Consensus 153 rTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgavGT~~~~~-----~~~~~~~~~~a~~LG~~~~~-~ 226 (359)
T 2fel_A 153 YTRMQAAIGITVADRAAGWIAPLERHLLRLETFAQNGFALQFGGAAGTLEKLG-----DNAGAVRADLAKRLGLADRP-Q 226 (359)
T ss_dssp EETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSBCCCCCTTSSCTTTG-----GGHHHHHHHHHHHHTCBCCC-C
T ss_pred cccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHhccCccCc-----chHHHHHHHHHHHhCcCCCc-h
Confidence 9999999999999999999999999999999986 6778999999976543 35678899999999999887 3
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHh
Q 013198 321 TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLS 400 (448)
Q Consensus 321 ~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~ 400 (448)
++.+||+++|++++++.++++|+|||+||++|++.| .++.. ++++||||||||+||+.+|++++ +++.+.|++.
T Consensus 227 -~~~~RD~~~e~~~~l~~~a~~L~kia~Dirll~s~e-~Ei~~-~~~~GSS~MP~K~NP~~~E~i~~---~a~~v~~~~~ 300 (359)
T 2fel_A 227 -WHNQRDGIAEFANLLSLVTGTLGKFGQDIALMAEIG-SEIRL-SGGGGSSAMPHKQNPVNAETLVT---LARFNAVQIS 300 (359)
T ss_dssp -CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTEEE-C------------CCHHHHHHHH---HHHHHHHHHH
T ss_pred -HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CeecC-CCCCCCccCCcccCCHHHHHHHH---HHHHHHHHHH
Confidence 677999999999999999999999999999999877 44433 35699999999999999999998 6667877776
Q ss_pred hcC--CCcccCCCCcchhhhh-hhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 401 MKL--PISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 401 ~~l--~~~~~eRDl~ds~~~r-~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
..+ -..|+|||+.+|..+| .+++++..+..++..+..++++|+||++
T Consensus 301 ~~~~~~~~~~er~~~~~~~e~~~lp~~~~~~~~~L~~~~~v~~~l~v~~~ 350 (359)
T 2fel_A 301 ALHQSLVQEQERSGAGWMLEWLTLPQMVTATGTSLLVAERLAAQIDRLGA 350 (359)
T ss_dssp HHHHTTCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
T ss_pred HHHHHhhccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 543 2344789999999988 6889999999999999999999999997
No 13
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=100.00 E-value=1.2e-68 Score=560.56 Aligned_cols=330 Identities=23% Similarity=0.320 Sum_probs=289.8
Q ss_pred cCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHHhhhCC
Q 013198 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNH 166 (448)
Q Consensus 87 ~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e~~t~h 166 (448)
..+||.. ++|+.+|||++++++|++||+||+++++ ++|+||++.+++| .+.+ .| |++.+.+.+.+++|
T Consensus 10 ~~~~~~~--~~~~~i~sd~~~i~~~~~v~~A~a~a~~---~~G~i~~~~a~~I---~~a~-~~---d~~~i~~~~~~~~~ 77 (444)
T 2pfm_A 10 MISRYTR--PEMGAIWTEENKFKAWLEVEILACEAWA---ELGDIPKEDVKKI---REHA-SF---DIDRIYEIEKETRH 77 (444)
T ss_dssp -CCTTCC--HHHHHHTSHHHHHHHHHHHHHHHHHHHH---HHTSSCHHHHHHH---HHHC-CC---CHHHHHHHHHHHCC
T ss_pred HHHhcch--HHHHHHcChHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHH---HHhC-CC---CHHHHHHHhccCCC
Confidence 3569984 7999999999999999999999999999 4899997555554 4333 44 68888888989999
Q ss_pred cHhHHHHHHHHHhc-cCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccc
Q 013198 167 DVKAVEYFLKQKCQ-SQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRT 245 (448)
Q Consensus 167 Dv~ave~~L~e~~g-~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRT 245 (448)
||+++|+.|.+++| . +.+++||+|||||||++|+++|++|+++.. |.+.|..|+++|.++|++|++++|||||
T Consensus 78 dVia~~~~l~e~~g~g-----~~g~~vH~g~SsnDv~~Ta~~L~lr~~l~~-l~~~l~~L~~~L~~~A~~~~~~~~~GrT 151 (444)
T 2pfm_A 78 DVVAFTRAVSETPALG-----EERKWVHYGLTSTDVVDTALSYILKQANEI-ILKDLENFVSILANKAKEHKYTIMMGRT 151 (444)
T ss_dssp HHHHHHHHHHTCTTCC-----GGGGGTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CHHHHHHHHHHHcCCC-----cccccccCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCeeeccc
Confidence 99999999999995 3 468999999999999999999999999995 9999999999999999999999999999
Q ss_pred cCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCC-C
Q 013198 246 HGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV-T 321 (448)
Q Consensus 246 H~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~-~ 321 (448)
|+|||+||||||||++|+++|.|+++||.++. ..+++||||||+... | +.+++.+++.|||+.++.+ +
T Consensus 152 HlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAvGt~~~~----~----~~~~~~~a~~LGl~~~~~~d~ 223 (444)
T 2pfm_A 152 HGVHAEPTTFGLKLGLWYEEMKRNVERFKQAANTVRVGKLSGAVGTYANI----D----PFVEKYVCENLGLEAAPISTQ 223 (444)
T ss_dssp TTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCTTSSCTTS----C----HHHHHHHHHHTTCEECSSCSS
T ss_pred CCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhhccCCcC----C----HHHHHHHHHHhCCCCCCCCcC
Confidence 99999999999999999999999999999986 677889999995432 2 4578999999999988776 6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHH
Q 013198 322 QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFL 399 (448)
Q Consensus 322 ~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~ 399 (448)
++ +||++++++++++.++++|+|||+||++|++ +|++.++..++++||||||||+||+.+|++++ +++.+.|+.
T Consensus 224 ~~-~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~---~a~~v~g~~ 299 (444)
T 2pfm_A 224 TL-QRDRHAHYMSTLALIATSIEKMAVEIRGLQKSETREVEEAFAKGQKGSSAMPHKRNPIGSENMTG---LARVIRGYM 299 (444)
T ss_dssp SC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEECCCCTTCCSCSSCTTCCCCHHHHHHHH---HHHHHHHHH
T ss_pred cc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcCccCCcccCCHHHHHHHH---HHHHHHHHH
Confidence 55 9999999999999999999999999999998 55555544448999999999999999999998 555777766
Q ss_pred h---hcCCCcccCCCCcchhhhhh-hhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 400 S---MKLPISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 400 ~---~~l~~~~~eRDl~ds~~~r~-l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
. .++| ++||||+++|.++|+ +++++..+..++..+.+++++|+||++
T Consensus 300 ~~~~~~~~-~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~e 350 (444)
T 2pfm_A 300 MTAYENVP-LWHERDISHSSAERVILPDATIALNYMLNRFGNIVKNLTVYPE 350 (444)
T ss_dssp HHHHHTSC-CCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECHH
T ss_pred HHHHHhCc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 4 3566 459999999999985 448999999999999999999999986
No 14
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=100.00 E-value=3.8e-65 Score=537.19 Aligned_cols=329 Identities=18% Similarity=0.195 Sum_probs=271.7
Q ss_pred cCccCcCCCCCccchhhhcC-----hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhH
Q 013198 84 LSPLDGRYWSKVKDLAPYMS-----EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVK 158 (448)
Q Consensus 84 ~sp~d~ry~~~~~~~~~~fs-----d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~ 158 (448)
..+|++||.+.+..+...|+ |++++++|+.||+||+++++ ++|+||++.+++| .+.++++. +.+.
T Consensus 8 ~~~~~~r~~~~~~~~~~~f~~s~~~d~~~~~~~~~v~~A~a~a~~---~~Gii~~~~a~~I---~~a~~~i~----~~~~ 77 (468)
T 1k7w_A 8 DKLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALE---KAGILTKTELEKI---LSGLEKIS----EEWS 77 (468)
T ss_dssp -----------CCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHH---HTTSSCHHHHHHH---HHHHHHHH----HHHH
T ss_pred ccccccccchhHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHH---HHHHHHHH----hhhh
Confidence 35899999988888999999 99999999999999999999 5899997666664 32222221 1122
Q ss_pred HHH---hhhCCcH-hHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013198 159 NIE---RVTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAK 234 (448)
Q Consensus 159 ~~e---~~t~hDv-~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~ 234 (448)
+.+ ..++||| +++|+++.+++|+ .+++||+|||||||++|+++|++|+++.. |.+.|.+|+++|.++|+
T Consensus 78 ~~~f~~~~~~~dv~m~~~~~l~e~~g~------~g~~vH~g~SsnDv~~Ta~~l~lr~~l~~-l~~~L~~L~~~L~~~A~ 150 (468)
T 1k7w_A 78 KGVFVVKQSDEDIHTANERRLKELIGD------IAGKLHTGRSRNDQVVTDLKLFMKNSLSI-ISTHLLQLIKTLVERAA 150 (468)
T ss_dssp HTCCCCCTTCCSHHHHHHHHHHHHHCG------GGGGGGTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred cccCccCCCCCchHHHHHHHHHHHccc------cccceecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 222 3479999 8999999999984 68999999999999999999999999995 99999999999999999
Q ss_pred HcccceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---cccccccc--ccccccccccCCCCChhHHHHHHH
Q 013198 235 DNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGA--VGNYNAHLSAYPDVNWPQITEDFV 309 (448)
Q Consensus 235 ~~~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGA--vGT~~a~~~~~~~~d~~~~~~~la 309 (448)
+|++++||||||+|||+||||||||++|++.|.|+++||.++. ..+++||+ +||. ++ .| ++.++
T Consensus 151 ~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~------~~-~~----~~~la 219 (468)
T 1k7w_A 151 IEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNP------LD-ID----REMLR 219 (468)
T ss_dssp HTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSEECTTCTTTTCCT------TC-CC----HHHHH
T ss_pred HccCCEeeccccCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCC------CC-CC----hHHHH
Confidence 9999999999999999999999999999999999999999986 46677776 4772 22 22 67899
Q ss_pred HhcCCCCCCCCC--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHh
Q 013198 310 KSLGLSFNPYVT--QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENS 385 (448)
Q Consensus 310 ~~LGl~~~~~~~--~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~ 385 (448)
+.|||+.++.++ |+.+||++++++++++.++++|+|||+||++|++ +|++++ ++...+||||||||+||+.+|++
T Consensus 220 ~~LG~~~~~~n~~~~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~s~e~g~iel-~e~~~~GSSiMP~K~NP~~~E~i 298 (468)
T 1k7w_A 220 SELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTL-SDAFSTGASLMPQKKNPDSLELI 298 (468)
T ss_dssp HHHTCSEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEEC-CGGGCEEETTEEEEEECHHHHHH
T ss_pred HHcCCCCCCCChHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceec-cCCCCCCCCCCCCCCCcHHHHHH
Confidence 999999655443 7889999999999999999999999999999988 888886 34444799999999999999999
Q ss_pred hccccchHHHHHHHh------hcCCCcccCCCCcchhhhhhhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 386 EGNLGKANEDLSFLS------MKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 386 ~g~~~la~~~~g~~~------~~l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
++ ++..+.|+.. .++|+ +||||+++++. .+++++.....++..+..++++|+||++
T Consensus 299 ~~---~a~~v~g~~~~~~~~~~~~p~-~~~rDl~~~~~--~l~~s~~~~~~~l~~~~~~l~gl~vn~e 360 (468)
T 1k7w_A 299 RS---KAGRVFGRLASILMVLKGLPS-TYNKDLQEDKE--AVFDVVDTLTAVLQVATGVISTLQISKE 360 (468)
T ss_dssp HH---HHHHHHHHHHHHHHHHTTCCS-SCCGGGGGHHH--HHHHHHHHHHHHHHHHHHHHHHCEECHH
T ss_pred HH---HHHHHHHHHHHHHHHHhCCch-HhhhhhhhhHh--HHHHHHHHHHHHHHHHHHHhCCCEECHH
Confidence 98 4557776653 46787 49999999754 6889999999999999999999999985
No 15
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=3.5e-64 Score=528.44 Aligned_cols=328 Identities=20% Similarity=0.233 Sum_probs=278.9
Q ss_pred CccCcCCCCCccchhhhcC-----hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHH
Q 013198 85 SPLDGRYWSKVKDLAPYMS-----EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKN 159 (448)
Q Consensus 85 sp~d~ry~~~~~~~~~~fs-----d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~ 159 (448)
..|+|||..++++....|+ |..++++++.+++||+++++ ++|+||++.+++| .+.++++. +.+.+
T Consensus 2 ~~~~gr~~~~~~~~~~~f~~s~~~d~~l~~~~i~~~~A~a~a~~---~~Gii~~~~a~~I---~~a~~~i~----~~~~~ 71 (457)
T 1tj7_A 2 ALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALV---TVGVLTAEEQAQL---EEALNVLL----EDVRA 71 (457)
T ss_dssp -CCCTTCSSCCCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHH---HTTSSCHHHHHHH---HHHHHHHH----HHHHH
T ss_pred cccccccccchHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHH---HHHHHHHH----hhHhc
Confidence 4799999988888888888 58999999999999999999 4899997666654 33333321 22333
Q ss_pred HHh----hhCCcH-hHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013198 160 IER----VTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAK 234 (448)
Q Consensus 160 ~e~----~t~hDv-~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~ 234 (448)
.+. .++||| +++|++|.+++|+ .++|||+||||||+++|+++|++|+++.. |.+.|.+|+++|.++|+
T Consensus 72 ~~~~~~~~~~~dv~~~v~~~l~e~~g~------~g~~vH~g~SsnD~~~Ta~~l~lr~~l~~-l~~~l~~l~~~L~~~A~ 144 (457)
T 1tj7_A 72 RPQQILESDAEDIHSWVEGKLIDKVGQ------LGKKLHTGRSRNDQVATDLKLWCKDTVSE-LLTANRQLQSALVETAQ 144 (457)
T ss_dssp CGGGGGGSCCSSHHHHHHHHHHHHHGG------GGGGTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCcCcCCCCCCcHHHHHHHHHHHHccc------cccceecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 333 359999 5899999999985 68999999999999999999999999995 99999999999999999
Q ss_pred HcccceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---cccccccc--ccccccccccCCCCChhHHHHHHH
Q 013198 235 DNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGA--VGNYNAHLSAYPDVNWPQITEDFV 309 (448)
Q Consensus 235 ~~~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGA--vGT~~a~~~~~~~~d~~~~~~~la 309 (448)
+|++++||||||+|||+||||||||++|++.|.|+++||.++. ..+++||+ +|| .+ .+| ++.++
T Consensus 145 ~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt------~~-~~~----~~~la 213 (457)
T 1tj7_A 145 NNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGT------AY-EID----REQLA 213 (457)
T ss_dssp TTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCBCTTCTTTTCC------SS-CCC----HHHHH
T ss_pred HccCCeeeccccCcCCeechHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCC------CC-CCC----HHHHH
Confidence 9999999999999999999999999999999999999999986 56677776 476 12 233 67799
Q ss_pred HhcCCCCCCCCC--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHHHh
Q 013198 310 KSLGLSFNPYVT--QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENS 385 (448)
Q Consensus 310 ~~LGl~~~~~~~--~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~ 385 (448)
+.|||+.++..+ |+.+||++++++++++.++++|+|||+||++|+| +|++++ ++...+||||||||+||+.+|++
T Consensus 214 ~~LGl~~~~~n~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~e~g~iel-~e~~~~GSSiMP~K~NP~~~E~i 292 (457)
T 1tj7_A 214 GWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVEL-SDRVTSGSSLMPQKKNPDALELI 292 (457)
T ss_dssp HHHTCSSBCSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEEC-CGGGCBCCTTCTTCCBCHHHHHH
T ss_pred HHcCCCCCCCChHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceec-cCCCCCCCCCCCCCCCcHHHHHH
Confidence 999999765543 7889999999999999999999999999999998 888876 34444899999999999999999
Q ss_pred hccccchHHHHHHHh------hcCCCcccCCCCcchhhhhhhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 386 EGNLGKANEDLSFLS------MKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 386 ~g~~~la~~~~g~~~------~~l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
++ +++.+.|+.. .++|+ +||||+++++. ++++++.....++..+..++++|+||++
T Consensus 293 ~~---~a~~v~g~~~~~~~~~~~~p~-~~~RDl~~~~~--~l~~s~~~~~~~l~~~~~~l~gl~vn~~ 354 (457)
T 1tj7_A 293 RG---KCGRVQGALTGMMMTLKGLPL-AYNKDMQEDKE--GLFDALDTWLDCLHMAALVLDGIQVKRP 354 (457)
T ss_dssp HH---THHHHHHHHHHHHHHHTTCCS-SCCGGGGGHHH--HHHHHHHHHHHHHHHHHHHHTTCEECHH
T ss_pred HH---HHHHHHHHHHHHHHHHhcCcH-HhhcchhhHHh--HHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 99 4556666653 45787 49999998644 6889999999999999999999999986
No 16
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=8.1e-64 Score=526.35 Aligned_cols=329 Identities=19% Similarity=0.175 Sum_probs=270.3
Q ss_pred cCccCcCCCCCccchhhhcCh-----hhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhH
Q 013198 84 LSPLDGRYWSKVKDLAPYMSE-----YGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVK 158 (448)
Q Consensus 84 ~sp~d~ry~~~~~~~~~~fsd-----~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~ 158 (448)
-..|++||...+....+.|+. ..++++++.+|+||+++++ ++|+||++.+++| .+.++++. +.+.
T Consensus 3 ~~~~g~r~~~~t~~~~~~f~~s~~~d~~l~~~~i~v~~A~a~a~~---~~Gii~~~~a~~I---~~a~~~i~----~~~~ 72 (462)
T 2e9f_A 3 HRTWGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLH---AVGLLSAEELEAI---LKGLDRIE----EEIE 72 (462)
T ss_dssp -----------CCSHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHH---HTTSSCHHHHHHH---HHHHHHHH----HHHH
T ss_pred ccccCCccchhhHHHHHhccCCCccCHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHH---HHHHHHHH----hhHh
Confidence 357999998888888888884 8999999999999999999 4899997666664 32222221 1112
Q ss_pred HHH---hhhCCcH-hHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013198 159 NIE---RVTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAK 234 (448)
Q Consensus 159 ~~e---~~t~hDv-~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~ 234 (448)
+.+ ..++||| +++|+++.+++|+ .+++||+||||||+++|+++|++|+++.. |.+.|..|+++|.++|+
T Consensus 73 ~~~f~~~~~~~dv~~~~~~~l~e~~g~------~g~~vH~g~SsnDv~~Ta~~l~lr~~l~~-l~~~l~~L~~~L~~~A~ 145 (462)
T 2e9f_A 73 AGTFPWREELEDVHMNLEARLTELVGP------PGGKLHTARSRNDQVATDLRLYLRGAIDE-LLALLLALRRVLVREAE 145 (462)
T ss_dssp HTCSCCCGGGCSHHHHHHHHHHHHHCT------THHHHTTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred cccCCcCCCCCchHHHHHHHHHHHccc------cccceecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 221 3479999 9999999999984 67999999999999999999999999995 99999999999999999
Q ss_pred Hcccc--eeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---cccccccc--ccccccccccCCCCChhHHHHH
Q 013198 235 DNANI--SMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGA--VGNYNAHLSAYPDVNWPQITED 307 (448)
Q Consensus 235 ~~~dt--~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGA--vGT~~a~~~~~~~~d~~~~~~~ 307 (448)
+|+++ +||||||+|||+||||||||++|++.|.|+++||.++. ..+++||+ +|| .++ .| ++.
T Consensus 146 ~~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt------~~~-~~----~~~ 214 (462)
T 2e9f_A 146 KHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGAAALAGT------GFP-ID----RHF 214 (462)
T ss_dssp HTTTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCEECTTCCSSSCC------SSC-CC----HHH
T ss_pred HccCcCccccCcccCccCeeccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccC------CCC-CC----HHH
Confidence 99999 99999999999999999999999999999999999986 56777776 476 122 22 678
Q ss_pred HHHhcCCCCCCCCC--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcceeeccCCCCcccCCCCCCcCchHHH
Q 013198 308 FVKSLGLSFNPYVT--QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFE 383 (448)
Q Consensus 308 la~~LGl~~~~~~~--~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E 383 (448)
+++.|||+.++..+ |+.+||++++++++++.++++|+|||+||++|++ +|++++ ++...+||||||||+||+.+|
T Consensus 215 ~a~~LG~~~~~~n~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~s~e~g~iel-~e~~~~GSSiMP~K~NP~~~E 293 (462)
T 2e9f_A 215 TARELGFKAPMRNSLDAVASRDFALEVLSALNIGMLHLSRMAEELILYSTEEFGFVEV-PDAFATGSSIMPQKKNPDILE 293 (462)
T ss_dssp HHHHTTCSEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEEC-CGGGCEECSSSSSCEECHHHH
T ss_pred HHHHhCCCCCCCCcHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEe-cCCCCCCCCCCCCCcCCHHHH
Confidence 99999999655543 7889999999999999999999999999999988 888876 344447999999999999999
Q ss_pred HhhccccchHHHHHHHh------hcCCCcccCCCCcchhhhhhhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198 384 NSEGNLGKANEDLSFLS------MKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYK 447 (448)
Q Consensus 384 ~~~g~~~la~~~~g~~~------~~l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~e 447 (448)
++++ ++..+.|+.. .++|+ +||||+++++. ++++++.....++..+..++++|+||++
T Consensus 294 ~i~~---~a~~v~g~~~~~~~~~~~~p~-~~~rDl~~~~~--~l~~s~~~~~~~l~~~~~~l~gl~vn~e 357 (462)
T 2e9f_A 294 LIRA---KAGRVLGAFVGLSAVVKGLPL-AYNKDLQEDKE--PLLDALATYRDSLRLLAALLPGLKWRRE 357 (462)
T ss_dssp HHHH---THHHHHHHHHHHHHHHTTCCS-SBCGGGGGGHH--HHHHHHHHHHHHHHHHHHHGGGCEECHH
T ss_pred HHHH---HHHHHHHHHHHHHHHHhCCch-HhhhchhhhHh--HHHHHHHHHHHHHHHHHHHhCcCEECHH
Confidence 9999 4557777653 46786 49999999754 6889999999999999999999999986
No 17
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=2.1e-61 Score=509.78 Aligned_cols=342 Identities=17% Similarity=0.143 Sum_probs=271.4
Q ss_pred ccCcCCCCCccchhhhcC--------hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHH-HHHHH-hcCCccChH
Q 013198 86 PLDGRYWSKVKDLAPYMS--------EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSY-LQGLI-DGFNMDDAL 155 (448)
Q Consensus 86 p~d~ry~~~~~~~~~~fs--------d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~-l~~~~-~~~~~~d~~ 155 (448)
|.|.+|+..+....+.|+ +++++++|++||+||+++++ ++|+||++.+++|.+ +.++. +......+.
T Consensus 18 p~~~~~g~~t~r~~~~f~~s~~~~~~~~~~i~~~~~ve~A~a~a~~---~~Gii~~~~a~~I~~a~~~i~~~~~~~~~f~ 94 (478)
T 1jsw_A 18 PADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMANK---ELQTIPKSVANAIIAACDEVLNNGKCMDQFP 94 (478)
T ss_dssp ESSCCCCHHHHHHHHHCCSCSCCSCCTTSHHHHHHHHHHHHHHHHH---HTTCSCHHHHHHHHHHHHHHSTTTCSTTCCC
T ss_pred CCccccchHHHHHHHhCCCcCccccCcHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhcchhccCCc
Confidence 566677766777777777 68899999999999999999 489999876666532 22332 211100111
Q ss_pred hhHHHHhhhCCcH-hHHH----HHHHHHhccCcccccccC--ccc------cCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 013198 156 EVKNIERVTNHDV-KAVE----YFLKQKCQSQPEIAKVLE--FFH------FACTSEDINNLAHALMLKEAINKVMFPVM 222 (448)
Q Consensus 156 ~i~~~e~~t~hDv-~ave----~~L~e~~g~~~~~~~~~~--~iH------~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L 222 (448)
... .-...+.|+ ++++ +.+.+++|. +.++ ++| +|||||||++|+++|++|+++.. |.+.|
T Consensus 95 v~~-~~~g~~~~~~mnv~~vIa~~~~e~~g~-----~~g~~~~lHpnd~Vn~g~SsnDv~~Ta~~L~lr~~l~~-l~~~L 167 (478)
T 1jsw_A 95 VDV-YQGGAGTSVNMNTNEVLANIGLELMGH-----QKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLIK-LVDAI 167 (478)
T ss_dssp CCS-SCCSTTHHHHHHHHHHHHHHHHHTTTS-----CCTTSCSSCCCCCCSCSCCHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred cch-hhccCcccccccHHHHHHHHHHHHcCc-----cccccccccccccccCCCChhhHHHHHHHHHHHHHHHH-HHHHH
Confidence 000 000011133 4444 466788874 2343 455 99999999999999999999984 99999
Q ss_pred HHHHHHHHHHHHHcccceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccc-ccccc-ccccccCC
Q 013198 223 DKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNY-NAHLSAYP 297 (448)
Q Consensus 223 ~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgG-AvGT~-~a~~~~~~ 297 (448)
.+|+++|.++|++|++++||||||+|||+||||||||++|+++|.|+++||.++. ..+++|| ||||. +.. |
T Consensus 168 ~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~RL~~~~~~~~~~~lGg~AvGT~~~~~----~ 243 (478)
T 1jsw_A 168 NQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLNTP----K 243 (478)
T ss_dssp HHHHHHHHHHHHHGGGCEEECCGGGSCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSCCSSSSCSSCT----T
T ss_pred HHHHHHHHHHHHHhhCCeeeccccCccceeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCCccCC----c
Confidence 9999999999999999999999999999999999999999999999999999986 5677777 88994 332 3
Q ss_pred CCChhHHHHHHHHhcCCCCCCCCC---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcceeeccCCCCcc
Q 013198 298 DVNWPQITEDFVKSLGLSFNPYVT---QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIG 369 (448)
Q Consensus 298 ~~d~~~~~~~la~~LGl~~~~~~~---~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s-----~G~~~~~~~~~~~G 369 (448)
+++ +.+.+++++.|||+.++..+ ++.+||++++++++++.++++|+|||+||++|+| +|++++ |.+++|
T Consensus 244 ~~~-~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~pr~e~gei~l--p~~~~G 320 (478)
T 1jsw_A 244 EYS-PLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINL--PELQAG 320 (478)
T ss_dssp THH-HHHHHHHHHHHCCCCEECSCSSSBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSCCCEEC--CCCSCC
T ss_pred chH-HHHHHHHHHHcCCCCCcCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCceeEEC--CCCCCC
Confidence 222 46778899999999754443 6899999999999999999999999999999995 677765 458999
Q ss_pred cCCCCCCcCchHHHHhhccccchHHHHHHHhh---cCCCcccCCCCcchhhhhhhhhhHHHHHHHHHHHH-hccccceeC
Q 013198 370 SSTMPHKVNPIDFENSEGNLGKANEDLSFLSM---KLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSAL-QGIAKLQVL 445 (448)
Q Consensus 370 SS~MPhKrNPv~~E~~~g~~~la~~~~g~~~~---~l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~-~~l~~L~Vn 445 (448)
|||||||+||+.+|++++ ++..+.|+... .+..++||+|+..+...+++++.+..+..++..+. +++++|+||
T Consensus 321 SSiMP~K~NP~~~E~i~~---~a~~v~g~~~~~~~~~~~~~~e~~~~~p~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn 397 (478)
T 1jsw_A 321 SSIMPAKVNPVVPEVVNQ---VCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITAN 397 (478)
T ss_dssp CSSCCCCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEEC
T ss_pred CCCCCcccCCHHHHHHHH---HHHHHHhHHHHHHHHHhccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHccCeec
Confidence 999999999999999998 55577777654 33456799998887667799999999999999997 699999999
Q ss_pred cC
Q 013198 446 YK 447 (448)
Q Consensus 446 ~e 447 (448)
++
T Consensus 398 ~e 399 (478)
T 1jsw_A 398 KE 399 (478)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 18
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A
Probab=100.00 E-value=6.1e-60 Score=497.28 Aligned_cols=336 Identities=18% Similarity=0.132 Sum_probs=267.9
Q ss_pred CccchhhhcC------hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHH-HHHHHhcCCccChHhhHHHHh-hhC
Q 013198 94 KVKDLAPYMS------EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSY-LQGLIDGFNMDDALEVKNIER-VTN 165 (448)
Q Consensus 94 ~~~~~~~~fs------d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~-l~~~~~~~~~~d~~~i~~~e~-~t~ 165 (448)
.+......|. |++++++|++||+||+++++ ++|+||++.+++|.+ +.++.+......+ ..+... ..+
T Consensus 25 ~t~r~~~~f~~s~~~~~~~~i~a~~~v~~A~a~a~~---~~Gii~~~~a~~I~~a~~~i~~~~~~~~f--~~~~~q~g~~ 99 (467)
T 1fur_A 25 QTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNE---DLGLLSEEKASAIRQAADEVLAGQHDDEF--PLAIWQTGSG 99 (467)
T ss_dssp HHHHHHHHCCCSSCBCCHHHHHHHHHHHHHHHHHHH---HTTSSCHHHHHHHHHHHHHHHTTTTGGGC--CCBSSSCTTC
T ss_pred hhHHHHHhccCCCccCCHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhccccccc--cchhhhcccc
Confidence 3444555565 78899999999999999999 599999877777633 3334332211111 011100 012
Q ss_pred CcH-hHHHHHH----HHHhccCcccccccCc--cc------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013198 166 HDV-KAVEYFL----KQKCQSQPEIAKVLEF--FH------FACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEI 232 (448)
Q Consensus 166 hDv-~ave~~L----~e~~g~~~~~~~~~~~--iH------~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~l 232 (448)
.|+ ++++..| .+++|. +.++| +| +||||||+++|+++|++|+++...|.+.|..|+++|.++
T Consensus 100 ~~~~mn~~~via~~a~e~~G~-----~~g~~~~lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l~~~l~~~l~~L~~~L~~~ 174 (467)
T 1fur_A 100 TQSNMNMNEVLANRASELLGG-----VRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEK 174 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-----CSSTTCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHhCc-----ccccccccCchhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244 5555544 788874 35555 66 999999999999999999999822999999999999999
Q ss_pred HHHcccceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccc-cccc-cccccccCCCCChhHHHHH
Q 013198 233 AKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGN-YNAHLSAYPDVNWPQITED 307 (448)
Q Consensus 233 A~~~~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgG-AvGT-~~a~~~~~~~~d~~~~~~~ 307 (448)
|++|++++||||||+|||+||||||||++|++.|.|+++||.++. ..+++|| |+|| ++.+ |++. +.+.+.
T Consensus 175 A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGgtAvGT~~~~~----~~~~-~~v~~~ 249 (467)
T 1fur_A 175 SRAFADIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTH----PEYA-RRVADE 249 (467)
T ss_dssp HHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSC----TTHH-HHHHHH
T ss_pred HHHhcCcEeeccccCccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCcchhcCCccCC----hhHH-HHHHHH
Confidence 999999999999999999999999999999999999999999985 4566665 8999 4432 2221 467788
Q ss_pred HHHhcCCCCCCCCC---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcceeeccCCCCcccCCCCCCcCchH
Q 013198 308 FVKSLGLSFNPYVT---QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS---LAYFKQVTKAGEIGSSTMPHKVNPID 381 (448)
Q Consensus 308 la~~LGl~~~~~~~---~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s---~G~~~~~~~~~~~GSS~MPhKrNPv~ 381 (448)
+++.|||+..++.+ ++.+||++++++++++.++++|+|||+||++|+| .|+.++..|.+++||||||||+||+.
T Consensus 250 la~~LGl~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~gei~lp~~~~GSSiMP~K~NP~~ 329 (467)
T 1fur_A 250 LAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQ 329 (467)
T ss_dssp HHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCSEECCCCSCCCTTCTTCCCCHH
T ss_pred HHHHhCCCCccCCCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCceeEECCCCCCCCCCCCcccCCHH
Confidence 99999999866543 4789999999999999999999999999999996 23444445678899999999999999
Q ss_pred HHHhhccccchHHHHHHHhhcC---CCcccCCCCcchhhhhhhhhhHHHHHHHHHHH-HhccccceeCcC
Q 013198 382 FENSEGNLGKANEDLSFLSMKL---PISRWQRDLTDSTVLRNMGGGLGHSLLAYKSA-LQGIAKLQVLYK 447 (448)
Q Consensus 382 ~E~~~g~~~la~~~~g~~~~~l---~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~-~~~l~~L~Vn~e 447 (448)
+|.+++ +|+.+.|+....+ ..+++|||...+...+++++.+.....++..+ .+++++|+||++
T Consensus 330 ~E~i~~---~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~e 396 (467)
T 1fur_A 330 CEALTM---LCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRE 396 (467)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCeeCHH
Confidence 999998 6778988886543 34567899999999999999999999999999 669999999986
No 19
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1
Probab=100.00 E-value=9.1e-60 Score=495.96 Aligned_cols=322 Identities=20% Similarity=0.198 Sum_probs=258.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHH-HHHHHhcCCcc--ChHhhHHHHhhhCCcH-hHHHHHH----
Q 013198 104 EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSY-LQGLIDGFNMD--DALEVKNIERVTNHDV-KAVEYFL---- 175 (448)
Q Consensus 104 d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~-l~~~~~~~~~~--d~~~i~~~e~~t~hDv-~ave~~L---- 175 (448)
|++++++|+++|+||+++++ ++|+||++.+++|.+ +.++.+....+ +++. .+.+ .+.|+ ++++..+
T Consensus 42 ~~~~i~~~~~v~~A~a~a~~---~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~~~-~q~~--~~~~~~mn~~~via~~a 115 (466)
T 1vdk_A 42 PLEIIRAYGMLKKAAARANL---ELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVV-FQTG--SGTQTNMNVNEVIANRA 115 (466)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---HTTSSCHHHHHHHHHHHHHHHTTTTGGGCCCBS-SSCT--TCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhcccccCCCchh-hhcc--ccccccccHHHHHHHHH
Confidence 67899999999999999999 599999877777633 34343322111 1111 0111 11133 3344333
Q ss_pred HHHhccCccccccc-Cccc------cCCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcccceeeccccC
Q 013198 176 KQKCQSQPEIAKVL-EFFH------FACTSEDINNLAHALMLKEAIN-KVMFPVMDKLIKALCEIAKDNANISMLSRTHG 247 (448)
Q Consensus 176 ~e~~g~~~~~~~~~-~~iH------~G~SsnDi~~Ta~~L~lr~~l~-~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~ 247 (448)
.+++|. +.+ ++|| +||||||+++|+++|++|+++. . |.+.|.+|+++|.++|++|++++||||||+
T Consensus 116 ~e~~g~-----~~g~~~lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l~~~-l~~~l~~L~~~L~~~A~~~~~~~~~GrTHl 189 (466)
T 1vdk_A 116 SEILGK-----PLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQR-LYPAVEGLIRTFTAKAQAFDQIVKVGRTHL 189 (466)
T ss_dssp HHHTTC-----CTTSCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred HHHhCc-----cccccccccccCcCCCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCeeeccccC
Confidence 788874 244 6677 9999999999999999999997 6 999999999999999999999999999999
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccc-cccc-cccccccCCCCChhHHHHHHHHhcCCCCCCCCC-
Q 013198 248 QPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGN-YNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT- 321 (448)
Q Consensus 248 Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgG-AvGT-~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~- 321 (448)
|||+||||||||++|++.|.|+++||.++. ..+++|| |+|| ++.. |++. +.+.+.+++.|||+.++..+
T Consensus 190 Q~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~AvGT~~~~~----~~~~-~~v~~~la~~LG~~~~~~~n~ 264 (466)
T 1vdk_A 190 MDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAH----PRFG-ELVAKYLAEETGLPFRVAENR 264 (466)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHGGGGEECTTCTTTSSCTTSC----TTHH-HHHHHHHHHHHSSCCEECSCT
T ss_pred ccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCccCC----chHH-HHHHHHHHHHcCCCCCCCcch
Confidence 999999999999999999999999999985 4566766 7999 4332 2211 46788999999999754433
Q ss_pred --cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHH
Q 013198 322 --QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANE 394 (448)
Q Consensus 322 --~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s-----~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~ 394 (448)
++.+||++++++++++.++++|+|||+||++|+| +|+++ .|.+++||||||||+||+.+|.+++ +|+.
T Consensus 265 ~~a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~gei~--lp~~~~GSSiMP~K~NP~~~E~i~~---~a~~ 339 (466)
T 1vdk_A 265 FAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEIT--IPANEPGSSIMPGKVNPTQVEALTM---VVVR 339 (466)
T ss_dssp THHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCSEE--CCCCSCCSSCCTTCCCCHHHHHHHH---HHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeEE--CCCCCCcCCCCCCCCCcHHHHHHHH---HHHH
Confidence 6789999999999999999999999999999995 55555 5667899999999999999999998 6678
Q ss_pred HHHHHhhc---CCCcccCCCCcchhhhhhhhhhHHHHHHHHHHH-HhccccceeCcC
Q 013198 395 DLSFLSMK---LPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSA-LQGIAKLQVLYK 447 (448)
Q Consensus 395 ~~g~~~~~---l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~-~~~l~~L~Vn~e 447 (448)
+.|+.... ...++|+++...+...+++++.+.....++..+ ..++++|+||++
T Consensus 340 v~g~~~~~~~~~~~g~~e~~~~~~~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~e 396 (466)
T 1vdk_A 340 VYGNDHTVAFAGSQGNFQLNVYKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLE 396 (466)
T ss_dssp HHHHHHHHHHHHTTCBTTBCSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHH
T ss_pred HHhHHHHHHHHHHccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCEEcHH
Confidence 88887543 244568888877776668999999999999999 569999999985
No 20
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1
Probab=100.00 E-value=3.7e-59 Score=492.85 Aligned_cols=324 Identities=19% Similarity=0.171 Sum_probs=253.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHH-HHHHHHhcCCcc--ChHhhHHHHhhhCCcH-hHHHHHH----
Q 013198 104 EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKS-YLQGLIDGFNMD--DALEVKNIERVTNHDV-KAVEYFL---- 175 (448)
Q Consensus 104 d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~-~l~~~~~~~~~~--d~~~i~~~e~~t~hDv-~ave~~L---- 175 (448)
++++++++++||+||+++++ ++|+||++.+++|. .+.++.+....+ +++. .+. ..+.|+ ++++..|
T Consensus 67 ~~~~i~a~~~v~~A~A~a~~---~~Gil~~~~a~aI~~a~~ei~~~~~~~~f~~~~-~q~--g~~t~~nmn~~evia~~a 140 (488)
T 1yfm_A 67 PLPLVHAFGVLKKSAAIVNE---SLGGLDPKISKAIQQAADEVASGKLDDHFPLVV-FQT--GSGTQSNMNANEVISNRA 140 (488)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---HTTCSCHHHHHHHHHHHHHHHHTSSGGGCCCBS-SSC--TTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhcccccCCCcch-hhc--cccccccccHHHHHHHHH
Confidence 46799999999999999999 59999987777763 334443322111 1111 011 112233 4444433
Q ss_pred HHHhccCccccccc-Cccc------cCCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcccceeeccccC
Q 013198 176 KQKCQSQPEIAKVL-EFFH------FACTSEDINNLAHALMLKEAIN-KVMFPVMDKLIKALCEIAKDNANISMLSRTHG 247 (448)
Q Consensus 176 ~e~~g~~~~~~~~~-~~iH------~G~SsnDi~~Ta~~L~lr~~l~-~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~ 247 (448)
.|.+|. +.+ ++|| +||||||+++|+++|++|+++. . |.+.|..|+++|.++|++|++++|+||||+
T Consensus 141 ~e~lG~-----~~g~~~vHp~d~Vn~g~SsNDv~~Ta~~L~lr~~l~~~-l~~~L~~L~~~L~~~A~e~~~~v~~GrTHl 214 (488)
T 1yfm_A 141 IEILGG-----KIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNE-LIPELTNLKNALEAKSKEFDHIVKIGRTHL 214 (488)
T ss_dssp HHC--------------CCCCCCCTTTCCHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred HHHhCc-----cccCCccCcccCcCCCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcEeeceecC
Confidence 577774 233 5566 9999999999999999999997 6 999999999999999999999999999999
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccc-cccc-cccccccCCCCChhHHHHHHHHhcCCCCCCCCC-
Q 013198 248 QPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGN-YNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT- 321 (448)
Q Consensus 248 Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgG-AvGT-~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~- 321 (448)
|||+||||||||++|++.|.|+++||.++. ..+++|| |||| ++.+ |++. +.+.+.+++.|||+..+..+
T Consensus 215 Q~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~~~----~~~~-~~v~~~la~~lGl~~~~~~n~ 289 (488)
T 1yfm_A 215 QDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTK----PGFD-VKIAEQISKETGLKFQTAPNR 289 (488)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSC----TTHH-HHHHHHHHHHHSSCCEECSCH
T ss_pred ccceEeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCccCC----hhHH-HHHHHHHHHHhCCCCccCccH
Confidence 999999999999999999999999999985 4556666 8999 5443 2221 46778899999999755443
Q ss_pred --cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHH
Q 013198 322 --QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS---LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDL 396 (448)
Q Consensus 322 --~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s---~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~ 396 (448)
++.+||++++++++++.++++|+|||+||++|+| .|+.++..|.+++||||||||+||+.+|.+++ +|..++
T Consensus 290 ~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsS~pr~g~gei~lp~~~~GSSiMP~K~NPv~~E~i~~---~a~~v~ 366 (488)
T 1yfm_A 290 FEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQ---VCVQVM 366 (488)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCCCTTSTTCCCCHHHHHHHH---HHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCceeEECCCCCCcCCCcccccCcHHHHHHHH---HHHHHH
Confidence 6789999999999999999999999999999996 34545556778899999999999999999998 677888
Q ss_pred HHHhhcC---CCcccCCCCcchhhhhhhhhhHHHHHHHHHHH-HhccccceeCcC
Q 013198 397 SFLSMKL---PISRWQRDLTDSTVLRNMGGGLGHSLLAYKSA-LQGIAKLQVLYK 447 (448)
Q Consensus 397 g~~~~~l---~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~-~~~l~~L~Vn~e 447 (448)
|+....+ ..++||++...+...+++++.+.....++..+ .+++++|+||++
T Consensus 367 G~~~~i~~a~~~g~~eln~~~p~~~~~l~~s~~~l~~~l~~~~~~~i~gl~vn~e 421 (488)
T 1yfm_A 367 GNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEP 421 (488)
T ss_dssp HHHHHHHHHHHCCBTTBCSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHH
T ss_pred hHHHHHHHHHhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 8875432 34568888777776668899999999999999 569999999985
No 21
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A
Probab=100.00 E-value=9e-58 Score=480.34 Aligned_cols=340 Identities=17% Similarity=0.142 Sum_probs=260.1
Q ss_pred ccCcCCCCCccchhhh--c--C----hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHH-HHHHHHhcCCcc--Ch
Q 013198 86 PLDGRYWSKVKDLAPY--M--S----EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKS-YLQGLIDGFNMD--DA 154 (448)
Q Consensus 86 p~d~ry~~~~~~~~~~--f--s----d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~-~l~~~~~~~~~~--d~ 154 (448)
|-|..|+ ...+|++ | | +.+++++++.||+|++++++ ++|+||++.+++|. .+.++.+....+ ++
T Consensus 18 p~~~~yg--~qt~ra~~nf~i~~~~~~~~~i~a~~~vk~A~A~a~~---~~Gil~~~~a~aI~~a~~~i~~~~~~~~f~~ 92 (468)
T 3r6q_A 18 PKDAYYG--VQTIRATENFPITGYRIHPELIKSLGIVKKSAALANM---EVGLLDKEVGQYIVKAADEVIEGKWNDQFIV 92 (468)
T ss_dssp CTTCCCC--HHHHHHHHHCCSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCSCHHHHHHHHHHHHHHHTTTTGGGCCS
T ss_pred CcccccC--HHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHHHhCccccCCCc
Confidence 3444555 4577777 8 4 67999999999999999999 59999987777763 344443321111 11
Q ss_pred HhhHHHHhhhCCcH-hHH----HHHHHHHhccCcccccccCc--cc------cCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 013198 155 LEVKNIERVTNHDV-KAV----EYFLKQKCQSQPEIAKVLEF--FH------FACTSEDINNLAHALMLKEAINKVMFPV 221 (448)
Q Consensus 155 ~~i~~~e~~t~hDv-~av----e~~L~e~~g~~~~~~~~~~~--iH------~G~SsnDi~~Ta~~L~lr~~l~~~L~~~ 221 (448)
+.+.. ..+.++ +.+ ...+.+++|+ +.++| || +||||||+++|+++|++|+++.. |.+.
T Consensus 93 ~~~~~---g~gt~~nmnvnevia~~~~e~~G~-----~~g~y~~vHpndhVn~g~SsnDv~~Ta~~L~~r~~l~~-l~~~ 163 (468)
T 3r6q_A 93 DPIQG---GAGTSINMNANEVIANRALELMGE-----EKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQ-LIET 163 (468)
T ss_dssp CSSCS---STTHHHHHHHHHHHHHHHHHHTTC-----CTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred cHHhc---cccccccccHHHHHHHHHHHHhcc-----ccCCcCccCCccCCCCCCChHhHHHHHHHHHHHHHHHH-HHHH
Confidence 11111 112243 333 3466777875 34443 66 79999999999999999999995 9999
Q ss_pred HHHHHHHHHHHHHHcccceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccc-cccc-cccccccC
Q 013198 222 MDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGN-YNAHLSAY 296 (448)
Q Consensus 222 L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgG-AvGT-~~a~~~~~ 296 (448)
|..|+++|.++|++|++++|+||||+|||+||||||||++|++.|.|+++||.++. ..+++|| |||| ++++.
T Consensus 164 L~~L~~~L~~~A~~~~~~v~~GrTHlQ~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~~~~--- 240 (468)
T 3r6q_A 164 TKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADP--- 240 (468)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHHTEECTTCTTTSSCTTCCH---
T ss_pred HHHHHHHHHHHHHHccCcEEecCcCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeecCCCCCCCh---
Confidence 99999999999999999999999999999999999999999999999999999986 4566776 8999 44331
Q ss_pred CCCChhHHHHHHHHhcCCCCCCCCC---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcceeeccCCCCccc
Q 013198 297 PDVNWPQITEDFVKSLGLSFNPYVT---QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS---LAYFKQVTKAGEIGS 370 (448)
Q Consensus 297 ~~~d~~~~~~~la~~LGl~~~~~~~---~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s---~G~~~~~~~~~~~GS 370 (448)
++ ...+.+++++.|||+..+..+ ++.+||++++++++++.++++|+|||+||++|+| .|+.++..|++++||
T Consensus 241 -~~-~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~Kia~DlrllsS~pr~g~gei~lp~~~~GS 318 (468)
T 3r6q_A 241 -EY-ISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGS 318 (468)
T ss_dssp -HH-HHHHHHHHHHHHCSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSCCCEECCCCSCCC
T ss_pred -HH-HHHHHHHHHHHhCCCCccccchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeEEECCCCCCCC
Confidence 11 134667889999999754332 5789999999999999999999999999999996 334344456789999
Q ss_pred CCCCCCcCchHHHHhhccccchHHHHHHHhhcC---CCcccCCCCcchhhhhhhhhhHHHHHHHHHHHH-hccccceeCc
Q 013198 371 STMPHKVNPIDFENSEGNLGKANEDLSFLSMKL---PISRWQRDLTDSTVLRNMGGGLGHSLLAYKSAL-QGIAKLQVLY 446 (448)
Q Consensus 371 S~MPhKrNPv~~E~~~g~~~la~~~~g~~~~~l---~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~-~~l~~L~Vn~ 446 (448)
||||||+||+.+|.+++ +|..++|+....+ ..+.||+..-..-...++++.+.....++..+. .++++|+||+
T Consensus 319 SiMP~K~NP~~~E~i~~---~a~~v~G~~~~i~~a~~~g~~eln~~~p~i~~~l~~s~~~l~~~l~~~~~~~i~gl~vn~ 395 (468)
T 3r6q_A 319 SIMPGKVNPVMPEVMNQ---VAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANE 395 (468)
T ss_dssp TTSTTCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECH
T ss_pred CCCCCCCCcHHHHHHHH---HHHHHHhHHHHHHHHHHcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECH
Confidence 99999999999999998 6778888875421 223355432221122367788888889999999 9999999998
Q ss_pred C
Q 013198 447 K 447 (448)
Q Consensus 447 e 447 (448)
+
T Consensus 396 e 396 (468)
T 3r6q_A 396 E 396 (468)
T ss_dssp H
T ss_pred H
Confidence 6
No 22
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Probab=100.00 E-value=6.5e-57 Score=474.22 Aligned_cols=345 Identities=17% Similarity=0.150 Sum_probs=256.6
Q ss_pred ccccCc-cCcCCCCCccchhhh--c--Ch------hhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHH-HHHHHHhc
Q 013198 81 LTALSP-LDGRYWSKVKDLAPY--M--SE------YGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKS-YLQGLIDG 148 (448)
Q Consensus 81 ~~~~sp-~d~ry~~~~~~~~~~--f--sd------~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~-~l~~~~~~ 148 (448)
|-.+.. -|..|+ ...+|++ | |. .+++++++.||+|++++++ ++|+||++.+++|. .+.++.+.
T Consensus 30 ~g~~~vp~~~~yG--~qt~Ra~~nf~i~~~~~~~~~~~i~a~~~vk~A~A~an~---~~G~l~~~~a~aI~~a~~ei~~g 104 (478)
T 3ocf_A 30 LGERDIPMDAYFG--IQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANY---KLRQLPEPKYAAIVAACDDIIDG 104 (478)
T ss_dssp TEEEEECTTCSSC--HHHHHHHHHCCCSSCBGGGSHHHHHHHHHHHHHHHHHHH---HTTSSCHHHHHHHHHHHHHHHTT
T ss_pred CCCccCCcccccC--HHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHH---hCCCCCHHHHHHHHHHHHHHHcC
Confidence 444444 444555 4577777 7 42 6899999999999999999 59999987777763 34444432
Q ss_pred CCcc--ChHhhHHHHhhhCCcH-hH----HHHHHHHHhccCcccccccCc--cc------cCCChhHHHHHHHHHHHHHH
Q 013198 149 FNMD--DALEVKNIERVTNHDV-KA----VEYFLKQKCQSQPEIAKVLEF--FH------FACTSEDINNLAHALMLKEA 213 (448)
Q Consensus 149 ~~~~--d~~~i~~~e~~t~hDv-~a----ve~~L~e~~g~~~~~~~~~~~--iH------~G~SsnDi~~Ta~~L~lr~~ 213 (448)
...+ +++.+... .+.++ +. +...+.+.+|. +.++| || +||||||+++|+++|++|++
T Consensus 105 ~~~~~f~~~~~q~g---~gt~~nmnvnevia~~a~e~~G~-----~~G~~~~vHpndhVn~g~SsNDv~~Ta~~L~~~~~ 176 (478)
T 3ocf_A 105 LLMEQFVVDVFQGG---AGTSSNMNANEVIANRALEHLGR-----PRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLS 176 (478)
T ss_dssp TTGGGCCCBTTCSS---TTHHHHHHHHHHHHHHHHHHTTC-----CTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHT
T ss_pred ccccCCCcchhhcc---CCccccchHHHHHHHHHHHHhch-----hcCCCCccCCCCCCCCCCChhhHHHHHHHHHHHHH
Confidence 1111 11111111 11233 33 33556677875 35666 77 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccc-cccc-
Q 013198 214 INKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGN- 288 (448)
Q Consensus 214 l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgG-AvGT- 288 (448)
+.. |.+.|..|+++|.++|++|+|++|+||||+|||+|+||||||++|++.|.|+++||.++. ..+++|| ||||
T Consensus 177 l~~-L~~~L~~L~~~L~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l~~~~lGgtAvGTg 255 (478)
T 3ocf_A 177 QNQ-VQTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAIGTR 255 (478)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHGGGEECTTC------
T ss_pred HHH-HHHHHHHHHHHHHHHHHHccCcEeecccccccceeecHHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCeeeCCC
Confidence 995 999999999999999999999999999999999999999999999999999999999885 4556665 8999
Q ss_pred cccccccCCCCChhHHHHHHHHhcCCCCCCCCC---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcceeec
Q 013198 289 YNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT---QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS---LAYFKQV 362 (448)
Q Consensus 289 ~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~---~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s---~G~~~~~ 362 (448)
++++ |++. ..+.+++++.|||++.+..+ ++++||++++++++++.++++|+|||+||++|+| .|+.++.
T Consensus 256 ~~~~----~~~~-~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~ 330 (478)
T 3ocf_A 256 INAS----HAYA-EQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIR 330 (478)
T ss_dssp ---------CHH-HHHHHHHHHHHTSCCEECSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCCEE
T ss_pred cCCC----hhHH-HHHHHHHHHhcCCCCccCCChhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeEEE
Confidence 5543 2222 45778899999999755443 5789999999999999999999999999999996 3555555
Q ss_pred cCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHhhcC---CCcccCCCCcchhhhhhhhhhHHHHHHHHHHHHh-c
Q 013198 363 TKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKL---PISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQ-G 438 (448)
Q Consensus 363 ~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~~~l---~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~-~ 438 (448)
.|++++||||||||+||+.+|.+++ +|..++|.....+ ..+.||...-..-...++++.+.....++..+.. +
T Consensus 331 lp~~q~GSSiMP~K~NPv~~E~i~~---~a~~V~G~~~~i~~a~~~g~leln~~~p~i~~~l~~s~~ll~~~~~~~~~~~ 407 (478)
T 3ocf_A 331 LPAVQPGSSIMPGKVNPVIPESVNQ---VCYQVIGNDLTVTMAAESGQLQLNAFEPLIVYNILSSMRLLGRAMTNLAERC 407 (478)
T ss_dssp CCCCSCCBTTBTTCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCCCCcccCcHHHHHHHH---HHHHHHhHHHHHHHHHhcCcchhcccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6779999999999999999999998 6778888865421 1222443322222234677777788888887765 6
Q ss_pred cccceeCcC
Q 013198 439 IAKLQVLYK 447 (448)
Q Consensus 439 l~~L~Vn~e 447 (448)
+++|+||++
T Consensus 408 v~gl~vn~e 416 (478)
T 3ocf_A 408 VDGIEANVE 416 (478)
T ss_dssp GGGCEECHH
T ss_pred hCCCEECHH
Confidence 999999986
No 23
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Probab=100.00 E-value=3.7e-56 Score=470.22 Aligned_cols=352 Identities=18% Similarity=0.117 Sum_probs=255.5
Q ss_pred cccccCccCcCCCC-CccchhhhcC------hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHH-HHHHHHhcCCc
Q 013198 80 SLTALSPLDGRYWS-KVKDLAPYMS------EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKS-YLQGLIDGFNM 151 (448)
Q Consensus 80 ~~~~~sp~d~ry~~-~~~~~~~~fs------d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~-~l~~~~~~~~~ 151 (448)
.|-.+..-...|++ .+....+-|. ++.++++++.|++|++++++ ++|+||++.+++|. .+.++.++...
T Consensus 38 ~~g~~~vp~~~~~G~~t~r~~~~F~is~~~~~~~~I~a~~~vk~A~A~a~~---~~Gil~~~~a~aI~~a~~ei~~~~~~ 114 (495)
T 4adm_A 38 TMGEVRVPAKALWRAQTQRAVENFPISGRGLERTQIRALGLLKGACAQVNS---DLGLLAPEKADAIIAAAAEIADGQHD 114 (495)
T ss_dssp TTEEEEEETTCSCCHHHHHHHHHCCSSSCBCCHHHHHHHHHHHHHHHHHHH---HTTSSCHHHHHHHHHHHHHHHTTSCG
T ss_pred cCCCccCChhhhcCchhHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHHHhCccc
Confidence 34455555556554 2333334442 46899999999999999999 59999987777763 34444433211
Q ss_pred cChHhhHHHHhhhCCcH-hHHHHHHHHHh--ccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013198 152 DDALEVKNIERVTNHDV-KAVEYFLKQKC--QSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKA 228 (448)
Q Consensus 152 ~d~~~i~~~e~~t~hDv-~ave~~L~e~~--g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~a 228 (448)
+.+... ......+.|+ ++++..|.++. |. .. --.+++||+||||||+++|+++|++|+++.+.|.+.|.+|+++
T Consensus 115 ~~f~~~-~~q~g~gt~~nmnvnevia~ra~lGG-~~-vH~~dhVn~g~SsNDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~ 191 (495)
T 4adm_A 115 DQFPID-VFQTGSGTSSNMNTNEVIASIAAKGG-VT-LHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDA 191 (495)
T ss_dssp GGCCCB-SSSCTTCHHHHHHHHHHHHHHHHHTT-CC-CCTTTTTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCCCcc-hhhccccccccccHHHHHHHHHHhCC-Cc-cCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111110 1111223366 78888888743 41 00 0124566679999999999999999999852499999999999
Q ss_pred HHHHHHHcccceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccc-cccc-cccccccCCCCChhH
Q 013198 229 LCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGN-YNAHLSAYPDVNWPQ 303 (448)
Q Consensus 229 L~~lA~~~~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgG-AvGT-~~a~~~~~~~~d~~~ 303 (448)
|.++|++|++++||||||+|||+||||||||++|++.|.|+++||.++. ..+++|| |||| ++++ |+++ ..
T Consensus 192 L~~kA~e~~d~v~~GrTHlQ~A~PiT~G~~~~~~a~~l~rd~~RL~~~~~~l~~~~LGgtAvGT~~~~~----~~~~-~~ 266 (495)
T 4adm_A 192 LAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGLNAP----DDFG-VR 266 (495)
T ss_dssp HHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSC----TTHH-HH
T ss_pred HHHHHHHccCCeeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeecCCccCC----hhHH-HH
Confidence 9999999999999999999999999999999999999999999999985 4566765 8999 4543 3322 45
Q ss_pred HHHHHHHhcCC-CCCCCC---CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcceeeccCCCCcccCCCC
Q 013198 304 ITEDFVKSLGL-SFNPYV---TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIGSSTMP 374 (448)
Q Consensus 304 ~~~~la~~LGl-~~~~~~---~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s-----~G~~~~~~~~~~~GSS~MP 374 (448)
+.+++++.||| +..+.. .++.+||++++++++++.++++|+|||+||++|+| +|+++ +|++++||||||
T Consensus 267 v~~~la~~lG~~~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~e~gei~--lp~~q~GSSiMP 344 (495)
T 4adm_A 267 VVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQ--LPDLQPGSSIMP 344 (495)
T ss_dssp HHHHHHHHHCCTTCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSTTSCCCEE--CCCC--------
T ss_pred HHHHHHHHhCCCCCccccchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEE--CCCCCCCCCCCC
Confidence 67889999999 554332 26889999999999999999999999999999987 56655 567899999999
Q ss_pred CCcCchHHHHhhccccchHHHHHHHhhcC---CCcccCCCCcchhhhhhhhhhHHHHHHHHHHH-HhccccceeCcC
Q 013198 375 HKVNPIDFENSEGNLGKANEDLSFLSMKL---PISRWQRDLTDSTVLRNMGGGLGHSLLAYKSA-LQGIAKLQVLYK 447 (448)
Q Consensus 375 hKrNPv~~E~~~g~~~la~~~~g~~~~~l---~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~-~~~l~~L~Vn~e 447 (448)
||+||+.+|.+++ +|.+++|.....+ ..+.||...-..-..+++++.+.....++..+ ..++++|+||++
T Consensus 345 ~K~NPv~~E~i~~---~a~~v~G~~~~i~~a~~~g~~eln~~~p~i~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~e 418 (495)
T 4adm_A 345 GKVNPVLPEAVTQ---VAAQVIGNDAAIAWGGANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVE 418 (495)
T ss_dssp -CCCCHHHHHHHH---HHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHH
T ss_pred CCCCcHHHHHHHH---HHHHHHhHHHHHHHHHHcChHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 9999999999998 6778888875431 22335544322223356778888888888888 799999999986
No 24
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}
Probab=100.00 E-value=1.6e-55 Score=463.14 Aligned_cols=358 Identities=16% Similarity=0.129 Sum_probs=274.2
Q ss_pred cccccccCccCcCCCCCccchhhhc--------ChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHH-HHHHHhc
Q 013198 78 LSSLTALSPLDGRYWSKVKDLAPYM--------SEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSY-LQGLIDG 148 (448)
Q Consensus 78 ~~~~~~~sp~d~ry~~~~~~~~~~f--------sd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~-l~~~~~~ 148 (448)
...|-.+..-+.+|++ .-.+|+++ .+..+++++..|++|++++.. ++|+||++.+++|.+ .+++++.
T Consensus 29 ~d~~g~~~vp~~~~~g-~qt~Ra~~nf~i~~~~~~~~~i~a~~~vk~AaA~an~---~~G~l~~~~a~aI~~a~~ev~~g 104 (482)
T 3gtd_A 29 SDSFGEIQIEEKFYWG-AQTQRSLNNFKISKQKMPKILIRALAILKKCAAQVNY---EFGDLEYKIATSIDKAIDRILAG 104 (482)
T ss_dssp EETTEEEEEETTCCCC-HHHHHHHHHCCCCSCBCCHHHHHHHHHHHHHHHHHHH---HTTCSCHHHHHHHHHHHHHHHHT
T ss_pred cccCCCccCCcccccC-HHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHHHcC
Confidence 3345556666667665 45677766 578999999999999999999 599999877777633 3333331
Q ss_pred CCccCh--HhhHHH-HhhhCCcH-hHHHHHHHHHhccCcc--c-ccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 013198 149 FNMDDA--LEVKNI-ERVTNHDV-KAVEYFLKQKCQSQPE--I-AKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPV 221 (448)
Q Consensus 149 ~~~~d~--~~i~~~-e~~t~hDv-~ave~~L~e~~g~~~~--~-~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~ 221 (448)
--.+.+ +.+... .-.+|.++ ..+++.+.+.+|.... . -..+.+||+||||||+++|+++|++++.+.+.|.+.
T Consensus 105 ~~~~~fp~~~~q~gsGt~~Nmn~NevIa~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~~~L~~~ 184 (482)
T 3gtd_A 105 EFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPA 184 (482)
T ss_dssp TTTTSCCCBSSSCTTCHHHHHHHHHHHHHHHHHHHHSCCCSSSSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CcccCCCeehhccCCCccccchHHHHHHHHHHHHhCcccCCcCcCCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 101111 111000 01233345 6678899999984110 0 012457888999999999999999998884349999
Q ss_pred HHHHHHHHHHHHHHcccceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccc-cccc-cccccccC
Q 013198 222 MDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGN-YNAHLSAY 296 (448)
Q Consensus 222 L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgG-AvGT-~~a~~~~~ 296 (448)
|..|+++|.++|++|++++|+||||+|||+|+||||||++|++.|.|+++||.++. ..+++|| |||| ++++
T Consensus 185 L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~P~TlG~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~~~---- 260 (482)
T 3gtd_A 185 LNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLAQGGTAVGTGINSK---- 260 (482)
T ss_dssp HHHHHHHHHHHHTTGGGCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTTTEECTTCTTTSSCTTSC----
T ss_pred HHHHHHHHHHHHHHccCcEeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCcCC----
Confidence 99999999999999999999999999999999999999999999999999999885 3445555 6899 5543
Q ss_pred CCCChhHHHHHHHHhcCCCCCCCCC---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcceeeccCCCCccc
Q 013198 297 PDVNWPQITEDFVKSLGLSFNPYVT---QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS---LAYFKQVTKAGEIGS 370 (448)
Q Consensus 297 ~~~d~~~~~~~la~~LGl~~~~~~~---~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s---~G~~~~~~~~~~~GS 370 (448)
|+++ +.+.+++++.|||++++..+ ++.+||++++++++++.++++|+|||+||++|+| .|+.++.+|++++||
T Consensus 261 ~~~~-~~v~~~la~~lGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp~~~~GS 339 (482)
T 3gtd_A 261 IGFD-IKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGSGPRCGLGELHLPENEPGS 339 (482)
T ss_dssp TTHH-HHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCCC
T ss_pred chhH-HHHHHHHHHHhCCCCccccchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCeeEEECCCCCCCC
Confidence 3333 46778999999999865444 7899999999999999999999999999999996 466566567889999
Q ss_pred CCCCCCcCchHHHHhhccccchHHHHHHHhhcC---CCcccCCCCcchhhhhhhhhhHHHHHHHHHHH-HhccccceeCc
Q 013198 371 STMPHKVNPIDFENSEGNLGKANEDLSFLSMKL---PISRWQRDLTDSTVLRNMGGGLGHSLLAYKSA-LQGIAKLQVLY 446 (448)
Q Consensus 371 S~MPhKrNPv~~E~~~g~~~la~~~~g~~~~~l---~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~-~~~l~~L~Vn~ 446 (448)
||||||+||+.+|.+++ +|.+++|.....+ ..+.||++...+-..|+++..+.....++..+ ..++++|+||+
T Consensus 340 SiMP~K~NPv~~E~i~~---~a~~v~G~~~~i~~a~~~g~~eln~~~pl~~~~~l~s~~ll~~~~~~~~~~~v~gl~vn~ 416 (482)
T 3gtd_A 340 SIMPGKVNPTQVEALTM---VCTQVMGNHVTVTIAGSNGHLELNVFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNI 416 (482)
T ss_dssp SSSTTCCCCHHHHHHHH---HHHHHHHHHHHHHHHHTCCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEECH
T ss_pred CCCCCCCCcHHHHHHHH---HHHHHHHHHHHHHHHHhcccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECH
Confidence 99999999999999998 6778888874321 23447888877766677776766666666555 57899999998
Q ss_pred C
Q 013198 447 K 447 (448)
Q Consensus 447 e 447 (448)
+
T Consensus 417 e 417 (482)
T 3gtd_A 417 A 417 (482)
T ss_dssp H
T ss_pred H
Confidence 6
No 25
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}
Probab=100.00 E-value=5.1e-55 Score=462.02 Aligned_cols=360 Identities=18% Similarity=0.141 Sum_probs=264.9
Q ss_pred ccccccccCccCcCCCC-CccchhhhcC------hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHH-HHHHhc
Q 013198 77 ELSSLTALSPLDGRYWS-KVKDLAPYMS------EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYL-QGLIDG 148 (448)
Q Consensus 77 ~~~~~~~~sp~d~ry~~-~~~~~~~~fs------d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l-~~~~~~ 148 (448)
+-..|-.+..-..+|++ .|..-.+-|. ...+++++..|+.|.|++.. ++|+||++.+++|.+. +++++.
T Consensus 39 e~d~~g~~~vp~~~~~g~qt~ra~~nf~i~~~~~~~~~i~a~~~vk~AaA~an~---~lG~l~~~~a~aI~~A~~ei~~g 115 (495)
T 4hgv_A 39 ETDTFGPIEVASDRYWGAQAQRSLGNFKIGWEKQPLAIVRALGIVKQAAARANM---ALGRLDPAIGDAIVKAAQEVIDG 115 (495)
T ss_dssp EEETTEEEEEETTCCCCHHHHHHHHHCCCCSCBCCHHHHHHHHHHHHHHHHHHH---HTTCSCHHHHHHHHHHHHHHHTT
T ss_pred eecCCCCccCCCccchHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHHHcC
Confidence 33445566666677665 1222222332 45799999999999999999 5999998888886433 333331
Q ss_pred CCccChH-hhHHHHhh--hCCcH-hHHHHHHHHHhccCcc---cccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 013198 149 FNMDDAL-EVKNIERV--TNHDV-KAVEYFLKQKCQSQPE---IAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPV 221 (448)
Q Consensus 149 ~~~~d~~-~i~~~e~~--t~hDv-~ave~~L~e~~g~~~~---~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~ 221 (448)
--.+.|. .+.+.... +|..+ ..+.....+.+|...+ .....+|||+|+||||+++||++|++++.+.+.|.+.
T Consensus 116 ~~~~~F~~d~~q~gsgt~~nmn~nevian~a~e~lg~~~g~~~~vhpnd~Vh~gqSsnDv~~TA~~l~~~~~~~~~L~~~ 195 (495)
T 4hgv_A 116 KLDEHFPLVVWQTGSGTQSNMNANEVVSNRAIELLGGVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACAERVIHDLLPA 195 (495)
T ss_dssp SSGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTTTCSCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred chhhccchhhhhhccccccCcchhHHHHHHHHHHcCcccCCCCCCCHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1001110 01111111 23333 3444455566654210 0124689999999999999999999998774459999
Q ss_pred HHHHHHHHHHHHHHcccceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccc-cccccc-cccccccC
Q 013198 222 MDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKF-AGAVGN-YNAHLSAY 296 (448)
Q Consensus 222 L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~l-gGAvGT-~~a~~~~~ 296 (448)
|..|+++|.++|++|++++|+||||+|||+||||||+|++|+++|.|+++||.++. ..+.+ |+|+|| .+++
T Consensus 196 L~~L~~~L~~kA~~~~~~~~~GRTHlQ~A~P~TlG~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGgtAvGtg~~~~---- 271 (495)
T 4hgv_A 196 LKHLHKALEEKVKAFDHIIKIGRTHTQDATPLTLGQEFSGYAAQVASSIKRIEMTLPGLCELAQGGTAVGTGLNAP---- 271 (495)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHHTEECTTCTTTSSCTTSC----
T ss_pred HHHHHHHHHHHHHHhcCCeeecccCCCCceeecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhcccCc----
Confidence 99999999999999999999999999999999999999999999999999999874 22333 468898 4432
Q ss_pred CCCChhHHHHHHHHhcCCCCCCCC---CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcceeeccCCCCccc
Q 013198 297 PDVNWPQITEDFVKSLGLSFNPYV---TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS---LAYFKQVTKAGEIGS 370 (448)
Q Consensus 297 ~~~d~~~~~~~la~~LGl~~~~~~---~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s---~G~~~~~~~~~~~GS 370 (448)
++++ ..+.+++++.+||.+.+.. .++++||++++++++++.++++|+|||+|||+|+| +|+.|+.+|++++||
T Consensus 272 ~~~~-~~v~~~la~~~gl~f~~a~n~~~~~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~S~~~~g~~Ei~~p~~q~GS 350 (495)
T 4hgv_A 272 VGFA-EKVAEEIAAITGIGFTSAPNKFEALAAHDSMVFSHGAINATAAALFKIANDIRFLGSGPRSGLGELSLPENEPGS 350 (495)
T ss_dssp TTHH-HHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCCC
T ss_pred hhHH-HHHHHHHHHHhCCCccccCCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEEecCcCCccc
Confidence 2222 3466888888898875433 26889999999999999999999999999999987 788888889999999
Q ss_pred CCCCCCcCchHHHHhhccccchHHHHHHHhh---cCCCcccCCCCcchhhhhhhhhhHHHHHHHH-HHHHhccccceeCc
Q 013198 371 STMPHKVNPIDFENSEGNLGKANEDLSFLSM---KLPISRWQRDLTDSTVLRNMGGGLGHSLLAY-KSALQGIAKLQVLY 446 (448)
Q Consensus 371 S~MPhKrNPv~~E~~~g~~~la~~~~g~~~~---~l~~~~~eRDl~ds~~~r~l~~~l~~~~~al-~~~~~~l~~L~Vn~ 446 (448)
||||||+||+.+|++++ +|.+++|.... ....+++|||..+|..+|+++..+.....++ ..+..++++|+||+
T Consensus 351 SiMP~K~NPv~~E~i~~---~a~~v~G~~~~i~~a~~~~~~e~n~~~~~~~~~ll~s~~~l~~~~~~~~~~~i~gl~vn~ 427 (495)
T 4hgv_A 351 SIMPGKVNPTQCEALTQ---VCVQVFGNHAALTFAGSQGHFELNVYNPLMAYNFLQSVQLLADAAISFTDNCVVGIEARE 427 (495)
T ss_dssp -----CCCCHHHHHHHH---HHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECH
T ss_pred ccCccccChHHHHHHHH---HHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCEECH
Confidence 99999999999999998 55588887543 2345568999999999998877777766654 44667999999998
Q ss_pred C
Q 013198 447 K 447 (448)
Q Consensus 447 e 447 (448)
+
T Consensus 428 e 428 (495)
T 4hgv_A 428 D 428 (495)
T ss_dssp H
T ss_pred H
Confidence 6
No 26
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.4e-54 Score=452.66 Aligned_cols=359 Identities=19% Similarity=0.134 Sum_probs=263.9
Q ss_pred ccccccccCccCcCCCC-CccchhhhcC--------hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHH-HHHHHH
Q 013198 77 ELSSLTALSPLDGRYWS-KVKDLAPYMS--------EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKS-YLQGLI 146 (448)
Q Consensus 77 ~~~~~~~~sp~d~ry~~-~~~~~~~~fs--------d~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~-~l~~~~ 146 (448)
+...|-.+..-..+|++ .|..-.+.|. ...+++++..|.+|++++.. ++| ||++.+++|. .+++++
T Consensus 33 e~D~~G~~~vp~~~~~g~qt~ra~~nf~i~~~~~~~~~~~i~a~~~vkkAaA~an~---~~G-l~~~~a~aI~~a~~ev~ 108 (490)
T 3e04_A 33 EYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQ---DYG-LDPKIANAIMKAADEVA 108 (490)
T ss_dssp EEETTEEEEEETTCCCCHHHHHHHHHCCCSCGGGBCCHHHHHHHHHHHHHHHHHGG---GGT-CCHHHHHHHHHHHHHHH
T ss_pred ccccCcCccCcchhhhhHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHHHHHhh---hcC-CCHHHHHHHHHHHHHHH
Confidence 33445556666677664 2222222331 24799999999999999999 589 9987777753 344444
Q ss_pred hcCCccChHh-hHHH--HhhhCCcH-hHHHHHHHHHhccCcc--c-ccccCccccCCChhHHHHHHHHHHHHHHHHHHHH
Q 013198 147 DGFNMDDALE-VKNI--ERVTNHDV-KAVEYFLKQKCQSQPE--I-AKVLEFFHFACTSEDINNLAHALMLKEAINKVMF 219 (448)
Q Consensus 147 ~~~~~~d~~~-i~~~--e~~t~hDv-~ave~~L~e~~g~~~~--~-~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~ 219 (448)
+.--.+.|.. +.+. .-.+|.++ ..+++.+.|++|.... + -...++||+||||||+++|+++|++++.+.+.|.
T Consensus 109 ~g~~~~~Fp~~~~q~Gsgt~~nmn~NEvia~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~~~L~ 188 (490)
T 3e04_A 109 EGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLL 188 (490)
T ss_dssp TTSCGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTSCCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred cCCcccCCceeeecCCCCCcccccHHHHHHHHHHHHhCcccCCCCCCCcccccCCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 3211111110 0000 11233345 6799999999985110 0 0123467779999999999999999988743499
Q ss_pred HHHHHHHHHHHHHHHHcccceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccc-cccc-cccccc
Q 013198 220 PVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGN-YNAHLS 294 (448)
Q Consensus 220 ~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgG-AvGT-~~a~~~ 294 (448)
+.|.+|+++|.++|++|++++|+||||+|||+|+||||||++|++.|.|+++||.++. ..+++|| |||| ++++
T Consensus 189 ~~L~~L~~aL~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l~~~~lGgtAvGTg~~~~-- 266 (490)
T 3e04_A 189 PGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAVGTGLNTR-- 266 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTCTTTSEECTTCTTTSSCTTSC--
T ss_pred HHHHHHHHHHHHHHHHhhCceeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCcCC--
Confidence 9999999999999999999999999999999999999999999999999999999985 3445555 6899 5543
Q ss_pred cCCCCChhHHHHHHHHhcCCCCCCCCC---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcceeeccCCCCc
Q 013198 295 AYPDVNWPQITEDFVKSLGLSFNPYVT---QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS---LAYFKQVTKAGEI 368 (448)
Q Consensus 295 ~~~~~d~~~~~~~la~~LGl~~~~~~~---~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s---~G~~~~~~~~~~~ 368 (448)
++++ +.+.+++++.|||++.+..+ ++.+||+++|++++++.++++|+|||+||++|+| .|+.++.+|++++
T Consensus 267 --~~~~-~~v~~~la~~lGl~~~~~~n~~da~~~rD~~ve~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp~~~~ 343 (490)
T 3e04_A 267 --IGFA-EKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILPENEP 343 (490)
T ss_dssp --TTHH-HHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSC
T ss_pred --hhHH-HHHHHHHHHHhCCCCcCCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEECCCCCC
Confidence 3333 46778999999999855444 7889999999999999999999999999999997 4666666778899
Q ss_pred ccCCCCCCcCchHHHHhhccccchHHHHHHHhhcC---CCcccCCCCcchhhhhhhhhhHHHHHHHHHHH-Hhcccccee
Q 013198 369 GSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKL---PISRWQRDLTDSTVLRNMGGGLGHSLLAYKSA-LQGIAKLQV 444 (448)
Q Consensus 369 GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~~~l---~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~-~~~l~~L~V 444 (448)
||||||||+||+.+|.+++ +|.+++|.....+ ..+.||++...+-..++++..+.....++..+ ..++++|+|
T Consensus 344 GSSiMP~K~NPv~~E~i~~---~a~~v~G~~~ai~~a~~~g~~eln~~~p~~~~~ll~s~~ll~~~~~~~~~~~v~gl~v 420 (490)
T 3e04_A 344 GSSIMPGKVNPTQCEAMTM---VAAQVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQA 420 (490)
T ss_dssp C-----CCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEE
T ss_pred CCCCCCCCCCcHHHHHHHH---HHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEE
Confidence 9999999999999999998 6668888874321 23446777666666677777777777776555 579999999
Q ss_pred CcC
Q 013198 445 LYK 447 (448)
Q Consensus 445 n~e 447 (448)
|++
T Consensus 421 n~e 423 (490)
T 3e04_A 421 NTE 423 (490)
T ss_dssp CHH
T ss_pred CHH
Confidence 986
No 27
>2wlv_A GAG polyprotein, HIV-2 capsid,; virus protein, RNA-binding, capsid protein, viral nucleoprotein, AIDS; 1.25A {Human immunodeficiency virus type 2} PDB: 2x82_A
Probab=23.34 E-value=48 Score=29.01 Aligned_cols=51 Identities=24% Similarity=0.259 Sum_probs=34.2
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCCCccccchhh
Q 013198 193 HFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGK 257 (448)
Q Consensus 193 H~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~P~T~G~ 257 (448)
--|+|.+|++.- |-..-. -..++.-|.+++.+.|.++ .|+|- +|-|+..|+
T Consensus 43 SegaTP~Dln~m---Ln~vgg----hqaamQ~lkd~INEeaaew------dr~HP-~~gP~ppgq 93 (144)
T 2wlv_A 43 SEGCTPYDINQM---LNCVGD----HQAAMQIIREIINEEAAEW------DVQHP-IPGPLPAGQ 93 (144)
T ss_dssp TTTCCHHHHHHH---HHTTTT----CHHHHHHHHHHHHHHHHHH------HHTCC-CCCCCCTTS
T ss_pred hcccCcHHHHHH---HHhccc----cHHHHHHHHHHHHHHHHHh------cccCC-CCCCCCCCC
Confidence 348899999832 222211 2245555777888888887 68998 888887774
No 28
>1l6n_A GAG polyprotein; matrix, capsid, maturation, viral protein; NMR {Human immunodeficiency virus 1} SCOP: a.61.1.1 a.73.1.1
Probab=21.66 E-value=45 Score=32.53 Aligned_cols=74 Identities=23% Similarity=0.264 Sum_probs=46.0
Q ss_pred HHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCCC
Q 013198 170 AVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQP 249 (448)
Q Consensus 170 ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~ 249 (448)
+-++.+.|+.- .||.-.--..+--|+|.+|++. +|-..-. -..++.-|.+++.+.|.++ .|+|-++
T Consensus 154 aWVkviEEkaf-spEvIpmFsALSeg~Tp~Dln~---mLn~vgg----hqaamQ~lkd~inEeAaeW------dr~HP~~ 219 (289)
T 1l6n_A 154 AWVKVVEEKAF-SPEVIPMFSALSEGATPQDLNT---MLNTVGG----HQAAMQMLKETINEEAAEW------DRLHPVH 219 (289)
T ss_dssp HHHHHHHHHSS-STTTHHHHHHHTTTCCHHHHHH---HHHHCCS----CHHHHHHHHHHHHHHHHHH------HHHSCCC
T ss_pred HHHHHHHhcCC-ChHHHHHHHHHhcccChHHHHH---HHHhccc----hHHHHHHHHHHHHHHHHHh------hccCCCC
Confidence 44555566542 2432222345667999999984 2222211 2345555778888888887 6899999
Q ss_pred ccccchhh
Q 013198 250 ASPTTLGK 257 (448)
Q Consensus 250 A~P~T~G~ 257 (448)
|-|+..|+
T Consensus 220 agp~ppgq 227 (289)
T 1l6n_A 220 AGPIAPGQ 227 (289)
T ss_dssp CCSCCSSC
T ss_pred CCCCCCCC
Confidence 99987663
Done!