BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013199
(448 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QLT|A Chain A, Crystal Structure Of An Isoform Of
Dl-Glycerol-3-Phosphatase, Rhr2p, From Saccharomyces
Cerevisiae
Length = 275
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 17/106 (16%)
Query: 78 MLLYMGTVSFDVV-PVIKHRPAPGSVYRSPQVYAKLKPEMDADNSSSDAISTIWKASHKG 136
+ L + FDV +I +PA + +R + K KP DA++ IS W+
Sbjct: 31 LSLKINAALFDVDGTIIISQPAIAAFWRD---FGKDKPYFDAEHVIH--ISHGWRTYDAI 85
Query: 137 VEWKP------CVKRSSGELPESNGYISVEANGGLNQQRISICNAV 176
++ P V + GE+PE G S+E G + +CNA+
Sbjct: 86 AKFAPDFADEEYVNKLEGEIPEKYGEHSIEVPGA-----VKLCNAL 126
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 204 RDIYDEDYFTSVLQNDVRVVNKIPEYIMERFDHNMSNVYNFRVKAW-------SPIQFYK 256
RDI+ DY+ + V PE + +R + S+V++F V W SP
Sbjct: 239 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP 298
Query: 257 DEVLPKLLEE--RLIRISPFANRL 278
E L KLL+E R+ + S N L
Sbjct: 299 VEELFKLLKEGHRMDKPSNCTNEL 322
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 204 RDIYDEDYFTSVLQNDVRVVNKIPEYIMERFDHNMSNVYNFRVKAW-------SPIQFYK 256
RDI+ DY+ + V PE + +R + S+V++F V W SP
Sbjct: 198 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP 257
Query: 257 DEVLPKLLEE--RLIRISPFANRL 278
E L KLL+E R+ + S N L
Sbjct: 258 VEELFKLLKEGHRMDKPSNCTNEL 281
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 204 RDIYDEDYFTSVLQNDVRVVNKIPEYIMERFDHNMSNVYNFRVKAW-------SPIQFYK 256
RDI+ DY+ + V PE + +R + S+V++F V W SP
Sbjct: 190 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP 249
Query: 257 DEVLPKLLEE--RLIRISPFANRL 278
E L KLL+E R+ + S N L
Sbjct: 250 VEELFKLLKEGHRMDKPSNCTNEL 273
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 204 RDIYDEDYFTSVLQNDVRVVNKIPEYIMERFDHNMSNVYNFRVKAW-------SPIQFYK 256
RDI+ DY+ + V PE + +R + S+V++F V W SP
Sbjct: 198 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP 257
Query: 257 DEVLPKLLEE--RLIRISPFANRL 278
E L KLL+E R+ + S N L
Sbjct: 258 VEELFKLLKEGHRMDKPSNCTNEL 281
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 204 RDIYDEDYFTSVLQNDVRVVNKIPEYIMERFDHNMSNVYNFRVKAW-------SPIQFYK 256
RDI+ DY+ + V PE + +R + S+V++F V W SP
Sbjct: 198 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP 257
Query: 257 DEVLPKLLEE--RLIRISPFANRL 278
E L KLL+E R+ + S N L
Sbjct: 258 VEELFKLLKEGHRMDKPSNCTNEL 281
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 204 RDIYDEDYFTSVLQNDVRVVNKIPEYIMERFDHNMSNVYNFRVKAW-------SPIQFYK 256
RDI+ DY+ + V PE + +R + S+V++F V W SP
Sbjct: 183 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP 242
Query: 257 DEVLPKLLEE--RLIRISPFANRL 278
E L KLL+E R+ + S N L
Sbjct: 243 VEELFKLLKEGHRMDKPSNCTNEL 266
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 204 RDIYDEDYFTSVLQNDVRVVNKIPEYIMERFDHNMSNVYNFRVKAW-------SPIQFYK 256
RDI+ DY+ + V PE + +R + S+V++F V W SP
Sbjct: 191 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP 250
Query: 257 DEVLPKLLEE--RLIRISPFANRL 278
E L KLL+E R+ + S N L
Sbjct: 251 VEELFKLLKEGHRMDKPSNCTNEL 274
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 204 RDIYDEDYFTSVLQNDVRVVNKIPEYIMERFDHNMSNVYNFRVKAW-------SPIQFYK 256
RDI+ DY+ + V PE + +R + S+V++F V W SP
Sbjct: 187 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP 246
Query: 257 DEVLPKLLEE--RLIRISPFANRL 278
E L KLL+E R+ + S N L
Sbjct: 247 VEELFKLLKEGHRMDKPSNCTNEL 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,911,598
Number of Sequences: 62578
Number of extensions: 592560
Number of successful extensions: 1288
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1280
Number of HSP's gapped (non-prelim): 21
length of query: 448
length of database: 14,973,337
effective HSP length: 102
effective length of query: 346
effective length of database: 8,590,381
effective search space: 2972271826
effective search space used: 2972271826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)