BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013199
(448 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
GN=At1g04910 PE=1 SV=1
Length = 519
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/323 (37%), Positives = 185/323 (57%), Gaps = 17/323 (5%)
Query: 126 ISTIWKASHKGVEWKPCVKRSSGELP---ESNGYISVEANGGLNQQRISICNAVAVAGYL 182
+ +W+++ G W+P S P E+NGY+ V NGGLNQQR +ICNAV A +
Sbjct: 59 VEELWESAKSG-GWRPSSAPRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARIM 117
Query: 183 NATLVIPNFHYHSIWRDPSKFRDIYDEDYFTSVLQNDVRVVNKIPEYIMERFDHNMSNVY 242
NATLV+P +S W D S F+ IYD ++F L+ DV++V KIP+ + + +
Sbjct: 118 NATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPD-VHKNGKTKKIKAF 176
Query: 243 NFRVKAWSPIQFYKDEVLPKLLEERLIRISPFANRLSFDAP-PAVQRLRCLANYEALRFS 301
R +PI++Y L + E I ++PF++RL+ + P QRLRC NY ALRF
Sbjct: 177 QIRPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFK 236
Query: 302 SPILTMGETLVARMKERSVNHGGKYISVHLRFEEDMVAFSCCVFDGGEREKEDMKEARER 361
I+ + E++V +++ + G ++S+HLRFE DM+AF+ C E++ +++ R+
Sbjct: 237 PHIMKLSESIVDKLRSQ-----GHFMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRKE 291
Query: 362 GWKGKFTKPGRVIRPGAIRINGKCPLTPLEVGLMLRGMGFDKNTYIFLASGKIYNAEKTM 421
+ K R+I R GKCPLTP EVGL+LR M FD +T I+LA+G+++ E+ M
Sbjct: 292 NFADK-----RLIY-NERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFM 345
Query: 422 APLIEMFPNLQTKEMLASEEELA 444
P +FP L + EEL+
Sbjct: 346 KPFRTLFPRLDNHSSVDPSEELS 368
>sp|A3MX72|SYW_PYRCJ Tryptophan--tRNA ligase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=trpS PE=3 SV=1
Length = 374
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 28 HGRGKPGGRFTPVGPPGRANLAHRLAWLFLSVLLRRQGIFLF 69
HG GKP +T GP G ++ H + W+ L L + G+ ++
Sbjct: 67 HGEGKPWALYTGRGPSGPVHIGHMVPWILLKWLSDKFGVEVY 108
>sp|A4WL99|SYW_PYRAR Tryptophan--tRNA ligase OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=trpS PE=3 SV=1
Length = 374
Score = 32.3 bits (72), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 28 HGRGKPGGRFTPVGPPGRANLAHRLAWLFLSVLLRRQGIFLF 69
HG G+P +T GP G ++ H + W+ L + G+ ++
Sbjct: 67 HGEGRPWALYTGRGPSGPVHIGHMVPWILLKWFSDKFGVEVY 108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,010,104
Number of Sequences: 539616
Number of extensions: 8192345
Number of successful extensions: 20307
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 20274
Number of HSP's gapped (non-prelim): 43
length of query: 448
length of database: 191,569,459
effective HSP length: 121
effective length of query: 327
effective length of database: 126,275,923
effective search space: 41292226821
effective search space used: 41292226821
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)