Query 013199
Match_columns 448
No_of_seqs 193 out of 372
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 06:03:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 98.8 1.7E-07 6E-12 94.6 16.7 70 151-224 19-100 (408)
2 3zy2_A Putative GDP-fucose pro 97.1 0.0031 1.1E-07 64.2 12.2 66 152-223 6-75 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 90.0 13 0.00045 39.2 17.9 196 154-431 145-362 (526)
4 2hhc_A NODZ, nodulation fucosy 77.0 2.8 9.6E-05 40.5 5.4 52 153-207 3-54 (330)
5 2hhc_A NODZ, nodulation fucosy 64.4 12 0.0004 36.1 6.5 35 295-334 145-179 (330)
6 1p3q_Q VPS9P, vacuolar protein 26.6 16 0.00054 27.9 0.3 14 419-432 14-27 (54)
7 3l32_A Phosphoprotein; antipar 25.1 28 0.00095 25.7 1.4 21 297-317 2-22 (45)
8 1l2m_A REP protein; A+B fold, 23.1 75 0.0026 27.5 4.0 25 384-409 17-41 (118)
9 2eqr_A N-COR1, N-COR, nuclear 20.9 53 0.0018 24.5 2.3 20 381-400 9-28 (61)
10 3k0b_A Predicted N6-adenine-sp 20.7 1.1E+02 0.0038 30.5 5.3 80 305-408 122-206 (393)
11 3ldg_A Putative uncharacterize 20.7 1.3E+02 0.0045 30.0 5.8 80 305-408 113-199 (384)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=98.76 E-value=1.7e-07 Score=94.61 Aligned_cols=70 Identities=20% Similarity=0.409 Sum_probs=55.2
Q ss_pred CCCCceEEEEec-C-chhHHHHHHHHHHHHHHHhcce----EEeccccccccccCCC------CCCcccChHHHHHhccc
Q 013199 151 PESNGYISVEAN-G-GLNQQRISICNAVAVAGYLNAT----LVIPNFHYHSIWRDPS------KFRDIYDEDYFTSVLQN 218 (448)
Q Consensus 151 ~~snGYL~V~~n-G-GLNQqR~~IcDAVaVAriLNAT----LVlP~l~~~s~W~D~S------~F~DIfDvdhFI~sL~~ 218 (448)
...++||+-..| | |.|.||...-.|.++|+.||.| ||||-...---|+-.+ .|++.||++++ +.
T Consensus 19 ~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~ 94 (408)
T 4ap5_A 19 ASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NK 94 (408)
T ss_dssp -CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HT
T ss_pred ccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hh
Confidence 357899999875 4 8999999999999999999999 9999665434455322 49999999865 45
Q ss_pred cceeec
Q 013199 219 DVRVVN 224 (448)
Q Consensus 219 dVrIVk 224 (448)
.|+||.
T Consensus 95 ~vpVI~ 100 (408)
T 4ap5_A 95 NIPVIE 100 (408)
T ss_dssp TSCEEE
T ss_pred hCCeeE
Confidence 667764
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=97.15 E-value=0.0031 Score=64.17 Aligned_cols=66 Identities=30% Similarity=0.426 Sum_probs=50.9
Q ss_pred CCCceEEEE-ecCchhHHHHHHHHHHHHHHHhcceEEeccccccccccCCCC---CCcccChHHHHHhccccceee
Q 013199 152 ESNGYISVE-ANGGLNQQRISICNAVAVAGYLNATLVIPNFHYHSIWRDPSK---FRDIYDEDYFTSVLQNDVRVV 223 (448)
Q Consensus 152 ~snGYL~V~-~nGGLNQqR~~IcDAVaVAriLNATLVlP~l~~~s~W~D~S~---F~DIfDvdhFI~sL~~dVrIV 223 (448)
..||||+-= |-|-..+|-...--+.+.|+.||-|||||-+-.-.. .. +. |++-|+++. |+..-|||
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~-~~-~~~vpf~~yF~v~~----l~~yhrvi 75 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH-PE-TKMIPFEFLFQVGT----VAKYTRVV 75 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS-SS-CEEECHHHHBCHHH----HTTTSCEE
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC-Cc-ccccchhheeecch----hhhhceee
Confidence 469998875 999999999999999999999999999987754222 12 43 888888865 44444555
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=89.97 E-value=13 Score=39.24 Aligned_cols=196 Identities=14% Similarity=0.139 Sum_probs=106.4
Q ss_pred CceEEEEe--cCchhHHHHHHHHHHHHHHHhcceEEeccccccccccC-CCCCCcccChHHHHHhccccceeeccCchhH
Q 013199 154 NGYISVEA--NGGLNQQRISICNAVAVAGYLNATLVIPNFHYHSIWRD-PSKFRDIYDEDYFTSVLQNDVRVVNKIPEYI 230 (448)
Q Consensus 154 nGYL~V~~--nGGLNQqR~~IcDAVaVAriLNATLVlP~l~~~s~W~D-~S~F~DIfDvdhFI~sL~~dVrIVk~LP~~~ 230 (448)
..||+... ..|+.-+-..++-+..+|-.+|-||||-.-. |.- ...|.++|+. +..+..- . |.
T Consensus 145 aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P------~s~~C~~--~-~~-- 209 (526)
T 2de0_X 145 AKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP------VSETCTD--R-SG-- 209 (526)
T ss_dssp SCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC------SCSSCCC--C-CC--
T ss_pred CCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC------cCccccC--C-Cc--
Confidence 47898886 4799999999999999999999999994422 432 2467777774 1111111 0 00
Q ss_pred HHhhcccCCcceecccccCCChhhHHhhccccccccceEEecCCC--cc---cc-CCCCch----hhhhh---------h
Q 013199 231 MERFDHNMSNVYNFRVKAWSPIQFYKDEVLPKLLEERLIRISPFA--NR---LS-FDAPPA----VQRLR---------C 291 (448)
Q Consensus 231 ~~~~~~~~~~~~~~~v~~~s~~~yY~~~vlP~l~k~~VI~l~~f~--~R---La-~~lP~~----iQrLR---------C 291 (448)
.....|..... -..+.||.+.-.+ ++ .. ..+|.+ ++++. +
T Consensus 210 -------------~~~~~w~~~~~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~q 268 (526)
T 2de0_X 210 -------------ISTGHWSGEVK--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQ 268 (526)
T ss_dssp -------------SCCCBCCCTTG--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHHH
T ss_pred -------------cccCCCCCccc--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHHH
Confidence 01112322110 0133444332211 11 11 134443 33332 1
Q ss_pred hhcccccccchhHHHHHHHHHHHHhhccccCCCceEEEeecchhhhHhhcccccCCchhHHHHHHHHHHhccccccCCCC
Q 013199 292 LANYEALRFSSPILTMGETLVARMKERSVNHGGKYISVHLRFEEDMVAFSCCVFDGGEREKEDMKEARERGWKGKFTKPG 371 (448)
Q Consensus 292 rvnf~ALrF~p~I~~lg~~LV~Rmr~~s~~s~g~yiALHLRfE~DMlAfsgC~~~g~~~E~~eL~~~R~~~wk~k~~~~~ 371 (448)
.+. .-+|+.++|++.-+.+.+.+.- +++.|+||.|- -|-++.. ....+-+ +-+..+. .|-.
T Consensus 269 ~~~-yl~rP~~~i~~~I~~~~~~l~~-----~~piVGVHIRr-GDk~~~E---~~~~~~~-~Y~~~v~--~~~~------ 329 (526)
T 2de0_X 269 FVK-YLIRPQPWLEKEIEEATKKLGF-----KHPVIGVHVRR-TDKVGTE---AAFHPIE-EYMVHVE--EHFQ------ 329 (526)
T ss_dssp HHH-HHTCBCHHHHHHHHHHHHHHTC-----CSSEEEEEECC-C-----C---CCSCSHH-HHHHHHH--HHHH------
T ss_pred HHH-HHcCCCHHHHHHHHHHHHHhCC-----CCCEEEEEEeC-CCCCccc---cccCCHH-HHHHHHH--HHHH------
Confidence 111 1389999999988888877642 57999999994 2443211 1111111 1111110 1100
Q ss_pred cccCchhhhcCCCCCCChHHHHHHHHhcCCCCCceEEEeeccccCccccchhHHHhCCCc
Q 013199 372 RVIRPGAIRINGKCPLTPLEVGLMLRGMGFDKNTYIFLASGKIYNAEKTMAPLIEMFPNL 431 (448)
Q Consensus 372 ~~i~~~~~R~~G~CPLTPeEvgl~LraLGf~~~T~IYlA~geiyGg~~~m~pL~~~FPnl 431 (448)
.|+.......+.||||+.+ ...++-+++.||+.
T Consensus 330 -----------------------~l~~~~~~~~~~ifLATDD----p~v~~e~k~~~p~~ 362 (526)
T 2de0_X 330 -----------------------LLARRMQVDKKRVYLATDD----PSLLKEAKTKYPNY 362 (526)
T ss_dssp -----------------------HHHTTSCCSSCEEEEEESC----HHHHHHHHHHCTTS
T ss_pred -----------------------HHHhhcCCCCCeEEEEcCC----HHHHHHHHHhCCCC
Confidence 1233346788999999988 56778888899986
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=77.04 E-value=2.8 Score=40.46 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=40.7
Q ss_pred CCceEEEEecCchhHHHHHHHHHHHHHHHhcceEEeccccccccccCCCCCCccc
Q 013199 153 SNGYISVEANGGLNQQRISICNAVAVAGYLNATLVIPNFHYHSIWRDPSKFRDIY 207 (448)
Q Consensus 153 snGYL~V~~nGGLNQqR~~IcDAVaVAriLNATLVlP~l~~~s~W~D~S~F~DIf 207 (448)
+..||++...|||.+|=-+++.|.++|...|.+|+|--.. ..|-. ..|.+.|
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f 54 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF 54 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC
Confidence 4679999999999999999999999999999998886443 22321 2355566
No 5
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=64.37 E-value=12 Score=36.10 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=26.4
Q ss_pred ccccccchhHHHHHHHHHHHHhhccccCCCceEEEeecch
Q 013199 295 YEALRFSSPILTMGETLVARMKERSVNHGGKYISVHLRFE 334 (448)
Q Consensus 295 f~ALrF~p~I~~lg~~LV~Rmr~~s~~s~g~yiALHLRfE 334 (448)
|.-|+++++|++..+.+.+.+-. +.++|+||.|.=
T Consensus 145 ~~yl~p~~~i~~~i~~~~~~~~~-----~~~~VGVHIRrg 179 (330)
T 2hhc_A 145 FRNIKLRSEIRARIDALYEEHFS-----GHSIIGVHVRHG 179 (330)
T ss_dssp HHHSCBCHHHHHHHHHHHHHHTT-----TSEEEEEEECC-
T ss_pred HhcCCccHHHHHHHHHHHHHhcc-----CCceEEEEEecC
Confidence 46789999999988888765321 359999999954
No 6
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=26.64 E-value=16 Score=27.87 Aligned_cols=14 Identities=36% Similarity=0.795 Sum_probs=11.5
Q ss_pred ccchhHHHhCCCcc
Q 013199 419 KTMAPLIEMFPNLQ 432 (448)
Q Consensus 419 ~~m~pL~~~FPnl~ 432 (448)
..+..|++|||++-
T Consensus 14 ~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHSTTSC
T ss_pred HHHHHHHHHcccCC
Confidence 45788999999984
No 7
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=25.14 E-value=28 Score=25.67 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.0
Q ss_pred ccccchhHHHHHHHHHHHHhh
Q 013199 297 ALRFSSPILTMGETLVARMKE 317 (448)
Q Consensus 297 ALrF~p~I~~lg~~LV~Rmr~ 317 (448)
|+-|+.-+.++|..+|.||++
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKt 22 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRS 22 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHHHHc
Confidence 455778889999999999996
No 8
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=23.05 E-value=75 Score=27.48 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=20.3
Q ss_pred CCCCChHHHHHHHHhcCCCCCceEEE
Q 013199 384 KCPLTPLEVGLMLRGMGFDKNTYIFL 409 (448)
Q Consensus 384 ~CPLTPeEvgl~LraLGf~~~T~IYl 409 (448)
+||||+||+...|+.|--+.+ ..||
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi 41 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFI 41 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeee
Confidence 699999999999999986654 3443
No 9
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.91 E-value=53 Score=24.53 Aligned_cols=20 Identities=10% Similarity=-0.223 Sum_probs=17.2
Q ss_pred cCCCCCCChHHHHHHHHhcC
Q 013199 381 INGKCPLTPLEVGLMLRGMG 400 (448)
Q Consensus 381 ~~G~CPLTPeEvgl~LraLG 400 (448)
++...|.|++|..+|++++-
T Consensus 9 r~~~~~WT~eE~~~F~~~~~ 28 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFI 28 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHH
Confidence 36778999999999999973
No 10
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=20.67 E-value=1.1e+02 Score=30.49 Aligned_cols=80 Identities=13% Similarity=0.261 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhhcc-----ccCCCceEEEeecchhhhHhhcccccCCchhHHHHHHHHHHhccccccCCCCcccCchhh
Q 013199 305 LTMGETLVARMKERS-----VNHGGKYISVHLRFEEDMVAFSCCVFDGGEREKEDMKEARERGWKGKFTKPGRVIRPGAI 379 (448)
Q Consensus 305 ~~lg~~LV~Rmr~~s-----~~s~g~yiALHLRfE~DMlAfsgC~~~g~~~E~~eL~~~R~~~wk~k~~~~~~~i~~~~~ 379 (448)
..+++.||+++++.. -...+|=+-+|+++++|.+.++--..|. .- .++.|+.
T Consensus 122 ~~vkdAI~d~~~~~~~~rp~vd~~~Pd~~i~v~l~~~~~~~~ld~sg~-~L--------~krgyr~-------------- 178 (393)
T 3k0b_A 122 AIVKKAIVNRVSEKYRRSGRLMETGALFKLEVSILKDEVTLTIDTSGA-GL--------HKRGYRL-------------- 178 (393)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCCSCSSBCCEEEEEETTEEEEEEESSSS-CT--------TCCSTTT--------------
T ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCCCEEEEEEEECCEEEEEEecCCC-cc--------ccccccc--------------
Confidence 357888999999753 1235677888999888877765333221 11 1234432
Q ss_pred hcCCCCCCChHHHHHHHHhcCCCCCceEE
Q 013199 380 RINGKCPLTPLEVGLMLRGMGFDKNTYIF 408 (448)
Q Consensus 380 R~~G~CPLTPeEvgl~LraLGf~~~T~IY 408 (448)
..|.=||.+.=++.||...|++.+..|+
T Consensus 179 -~~~~Apl~e~lAa~ll~l~~~~~~~~vl 206 (393)
T 3k0b_A 179 -AQGSAPIKETMAAALVLLTSWHPDRPFY 206 (393)
T ss_dssp -TSCSCSCCHHHHHHHHHHSCCCTTSCEE
T ss_pred -CCCCCCCcHHHHHHHHHHhCCCCCCeEE
Confidence 2477899999999999999999887766
No 11
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=20.66 E-value=1.3e+02 Score=29.98 Aligned_cols=80 Identities=9% Similarity=0.108 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhhccc-------cCCCceEEEeecchhhhHhhcccccCCchhHHHHHHHHHHhccccccCCCCcccCch
Q 013199 305 LTMGETLVARMKERSV-------NHGGKYISVHLRFEEDMVAFSCCVFDGGEREKEDMKEARERGWKGKFTKPGRVIRPG 377 (448)
Q Consensus 305 ~~lg~~LV~Rmr~~s~-------~s~g~yiALHLRfE~DMlAfsgC~~~g~~~E~~eL~~~R~~~wk~k~~~~~~~i~~~ 377 (448)
..+++.+|++++++.. ...+|=+-+|+++++|.+..+--..|. .- .++.|+
T Consensus 113 ~~vkdAi~d~~~~~~~~r~~~~v~~~~pd~~i~v~~~~~~~~~~ld~sg~-~L--------hkRgyr------------- 170 (384)
T 3ldg_A 113 GITKKAIVKKLQHYFHRPDSVPLPENGPEFKIEISLLKDQARVMIDTTGP-SL--------FKRGYR------------- 170 (384)
T ss_dssp HHHHHHHHHHHHHHTTCCTTSCCCCCSCBCEEEEEEETTEEEEEEESSSS-CT--------TCCSCC-------------
T ss_pred HHHHHHHHHHHHHhhCCCCccccCCCCCCEEEEEEEECCEEEEEEeccCC-cc--------cccCcc-------------
Confidence 3477889999997531 225677889999999887765333221 11 123332
Q ss_pred hhhcCCCCCCChHHHHHHHHhcCCCCCceEE
Q 013199 378 AIRINGKCPLTPLEVGLMLRGMGFDKNTYIF 408 (448)
Q Consensus 378 ~~R~~G~CPLTPeEvgl~LraLGf~~~T~IY 408 (448)
...|.=||.+.=++.||...|++.+..|+
T Consensus 171 --~~~~~Apl~e~LAaall~l~~~~~~~~ll 199 (384)
T 3ldg_A 171 --TEKGGAPIKENMAAAIILLSNWFPDKPFV 199 (384)
T ss_dssp --CC---CCCCHHHHHHHHHHTTCCTTSCEE
T ss_pred --cCCCCCCCcHHHHHHHHHHhCCCCCCeEE
Confidence 23478899999999999999999887776
Done!