Query 013199
Match_columns 448
No_of_seqs 193 out of 372
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 06:03:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013199.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013199hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oqya2 a.5.2.1 (A:317-360) DN 48.5 0.92 6.7E-05 31.7 -1.5 26 388-413 1-30 (44)
2 d2ihoa2 d.3.1.18 (A:156-293) A 47.6 1.4 0.0001 36.8 -0.7 36 185-220 31-71 (138)
3 d1l5ia_ d.89.1.4 (A:) DNA-bind 34.6 17 0.0012 29.6 4.0 26 384-410 17-42 (118)
4 d1wgla_ a.5.2.4 (A:) Toll-inte 26.4 7.4 0.00054 28.3 0.3 17 417-433 9-25 (59)
5 d1mn3a_ a.5.2.4 (A:) Vacuolar 23.5 9 0.00066 27.4 0.3 15 418-432 13-27 (54)
6 d2fr5a1 c.97.1.1 (A:11-146) mo 22.7 24 0.0017 28.7 2.9 100 327-439 28-134 (136)
7 d1vjna_ d.157.1.4 (A:) Hypothe 21.7 43 0.0032 28.1 4.6 55 156-218 130-184 (209)
8 d1uwza_ c.97.1.1 (A:) mono-dom 19.1 38 0.0028 27.2 3.4 98 327-437 26-130 (130)
9 d1okga1 c.46.1.2 (A:7-162) 3-m 18.5 56 0.0041 26.8 4.5 29 382-410 66-95 (156)
10 d1jjcb2 a.6.1.1 (B:400-474) Do 16.3 30 0.0022 25.2 1.9 23 379-402 13-35 (75)
No 1
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.51 E-value=0.92 Score=31.71 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=19.4
Q ss_pred ChHHHHH--HHHhcCCCCCc--eEEEeecc
Q 013199 388 TPLEVGL--MLRGMGFDKNT--YIFLASGK 413 (448)
Q Consensus 388 TPeEvgl--~LraLGf~~~T--~IYlA~ge 413 (448)
||+|-.- =|.+|||+++. ..|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 5666443 48899999998 46888776
No 2
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=47.63 E-value=1.4 Score=36.81 Aligned_cols=36 Identities=36% Similarity=0.662 Sum_probs=29.6
Q ss_pred eEEeccccccccccCCC-----CCCcccChHHHHHhccccc
Q 013199 185 TLVIPNFHYHSIWRDPS-----KFRDIYDEDYFTSVLQNDV 220 (448)
Q Consensus 185 TLVlP~l~~~s~W~D~S-----~F~DIfDvdhFI~sL~~dV 220 (448)
-||||...-+++|+++- -=++|||-|.|--..|.-|
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 38999999999999852 2589999999988876553
No 3
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=34.59 E-value=17 Score=29.62 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=21.0
Q ss_pred CCCCChHHHHHHHHhcCCCCCceEEEe
Q 013199 384 KCPLTPLEVGLMLRGMGFDKNTYIFLA 410 (448)
Q Consensus 384 ~CPLTPeEvgl~LraLGf~~~T~IYlA 410 (448)
+||||+||+.-.|+.|==+.+.. ||.
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~~-~i~ 42 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNKL-FIK 42 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCEE-EEE
T ss_pred CCCCCHHHHHHHHHHhcCCccee-EEE
Confidence 69999999999999997666553 444
No 4
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.36 E-value=7.4 Score=28.32 Aligned_cols=17 Identities=29% Similarity=0.757 Sum_probs=13.7
Q ss_pred ccccchhHHHhCCCccc
Q 013199 417 AEKTMAPLIEMFPNLQT 433 (448)
Q Consensus 417 g~~~m~pL~~~FPnl~t 433 (448)
-+..+.-|++|||++..
T Consensus 9 ~Ee~i~~LkeMFP~~D~ 25 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNMDQ 25 (59)
T ss_dssp CHHHHHHHHHHCSSSCH
T ss_pred cHHHHHHHHHHCCCCCH
Confidence 35679999999999853
No 5
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.54 E-value=9 Score=27.37 Aligned_cols=15 Identities=33% Similarity=0.769 Sum_probs=12.2
Q ss_pred cccchhHHHhCCCcc
Q 013199 418 EKTMAPLIEMFPNLQ 432 (448)
Q Consensus 418 ~~~m~pL~~~FPnl~ 432 (448)
+..++-|++|||++-
T Consensus 13 ~e~~~~Lk~MFP~~D 27 (54)
T d1mn3a_ 13 KDTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHHCTTSC
T ss_pred HHHHHHHHHHCCCCC
Confidence 356889999999874
No 6
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.69 E-value=24 Score=28.68 Aligned_cols=100 Identities=19% Similarity=0.325 Sum_probs=57.9
Q ss_pred EEEeecchhhhHhhcccc-----cC-CchhHHHHHHHHHHhccccccCCCCcccCchhhhcCCCCCCChHH-HHHHHHhc
Q 013199 327 ISVHLRFEEDMVAFSCCV-----FD-GGEREKEDMKEARERGWKGKFTKPGRVIRPGAIRINGKCPLTPLE-VGLMLRGM 399 (448)
Q Consensus 327 iALHLRfE~DMlAfsgC~-----~~-g~~~E~~eL~~~R~~~wk~k~~~~~~~i~~~~~R~~G~CPLTPeE-vgl~LraL 399 (448)
|+-=++.+ |=-.|+||. |+ +..+|+-.+.++-...=+ ++. . ..+.. ...+. +++|=- ---+|.-
T Consensus 28 VGAa~~~~-dG~i~~G~NvEnasy~~~iCAEr~Ai~~a~~~g~~-~~~-~-~~~~~---~~~~~-~~~PCG~CRQ~l~E- 98 (136)
T d2fr5a1 28 VGAALLTG-DGRIFSGCNIENACYPLGVCAERTAIQKAISEGYK-DFR-A-IAISS---DLQEE-FISPCGACRQVMRE- 98 (136)
T ss_dssp EEEEEEET-TSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCC-CEE-E-EEEEE---SCSSS-CCCCCHHHHHHHHH-
T ss_pred EEEEEEeC-CCCEEEEEeecccccccccchhheeeeeeeccCCc-cEE-E-EEeec---ccCCC-CCCcchhhhHHHHh-
Confidence 55666665 555667764 22 446899988877643211 110 0 00111 00111 233421 1234555
Q ss_pred CCCCCceEEEeeccccCccccchhHHHhCCCccccccCCC
Q 013199 400 GFDKNTYIFLASGKIYNAEKTMAPLIEMFPNLQTKEMLAS 439 (448)
Q Consensus 400 Gf~~~T~IYlA~geiyGg~~~m~pL~~~FPnl~tKetLas 439 (448)
|..++.||+...+ |+.....|+++.|.-+++++|-.
T Consensus 99 -~~~~~~i~~~~~~---~~~~~~tl~eLLP~~F~~~~L~~ 134 (136)
T d2fr5a1 99 -FGTDWAVYMTKPD---GTFVVRTVQELLPASFGPEDLQK 134 (136)
T ss_dssp -TCSSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGGTC
T ss_pred -hCCCceEEEECCC---CCEEEeEHHHhCcCCCChHHhCc
Confidence 4578999998776 66677789999999999998853
No 7
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=21.74 E-value=43 Score=28.14 Aligned_cols=55 Identities=29% Similarity=0.382 Sum_probs=34.8
Q ss_pred eEEEEecCchhHHHHHHHHHHHHHHHhcceEEeccccccccccCCCCCCcccChHHHHHhccc
Q 013199 156 YISVEANGGLNQQRISICNAVAVAGYLNATLVIPNFHYHSIWRDPSKFRDIYDEDYFTSVLQN 218 (448)
Q Consensus 156 YL~V~~nGGLNQqR~~IcDAVaVAriLNATLVlP~l~~~s~W~D~S~F~DIfDvdhFI~sL~~ 218 (448)
.+++.+.|..+ ..--+|+-+|+.|++-.|||- + |+.....| ++=.+|.|++.++.
T Consensus 130 va~lpigg~~~---m~~~ea~~~~~~l~pk~viP~-H---~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 130 VLLVPVGGTYT---IGPKEAKEVADLLNAKVIIPM-H---YKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp EEEEECCSSSS---CCHHHHHHHHHHTTCSEEEEE-S---CCCSSCCT-TCCCTHHHHTTSSC
T ss_pred EEEEecCCccc---cCHHHHHHHHHHhCCCEEEEe-c---cCCccccc-CcCCHHHHHHHhhh
Confidence 45555444321 345689999999999999995 1 22222333 45567888887663
No 8
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]}
Probab=19.10 E-value=38 Score=27.15 Aligned_cols=98 Identities=16% Similarity=0.236 Sum_probs=53.6
Q ss_pred EEEeecchhhhHhhccccc------CCchhHHHHHHHHHHhccccccCCCCcccCchhhhcCCCCCCChH-HHHHHHHhc
Q 013199 327 ISVHLRFEEDMVAFSCCVF------DGGEREKEDMKEARERGWKGKFTKPGRVIRPGAIRINGKCPLTPL-EVGLMLRGM 399 (448)
Q Consensus 327 iALHLRfE~DMlAfsgC~~------~g~~~E~~eL~~~R~~~wk~k~~~~~~~i~~~~~R~~G~CPLTPe-Evgl~LraL 399 (448)
|+-=++.+ |=-.|.||.- .+..+|+..+.++.-..=+ ++. -..+.. +..+ |++|= =---+|..+
T Consensus 26 VGAa~~~~-~G~i~~G~NvEnas~~~~~CAEr~Ai~~a~~~g~~-~~~--~i~v~~---~~~~--~~sPCG~CRQ~l~E~ 96 (130)
T d1uwza_ 26 VGAALLTK-DGKVYRGCNIENAAYSMCNCAEATALFKAVSEGDT-EFQ--MLAVAA---DTPG--PVSPCGACRQVISEL 96 (130)
T ss_dssp EEEEEEET-TSCEEEEECBCCSSGGGCBCHHHHHHHHHHHHTCC-CEE--EEEEEE---SCSS--SCCCCHHHHHHHHHH
T ss_pred EEEEEEeC-CCCEEEEeeeccccccccccceehhhHHHHHhhhc-cee--eEEEEc---CCCC--ccCcCHHHHHHHHHh
Confidence 55555554 4445555522 2236888888877643211 110 001111 1111 23331 112345555
Q ss_pred CCCCCceEEEeeccccCccccchhHHHhCCCccccccC
Q 013199 400 GFDKNTYIFLASGKIYNAEKTMAPLIEMFPNLQTKEML 437 (448)
Q Consensus 400 Gf~~~T~IYlA~geiyGg~~~m~pL~~~FPnl~tKetL 437 (448)
+ +.++.||+...+ |+-....|+++.|.=+++++|
T Consensus 97 ~-~~~~~i~l~~~~---g~~~~~~l~eLLP~~F~~~dL 130 (130)
T d1uwza_ 97 C-TKDVIVVLTNLQ---GQIKEMTVEELLPGAFSSEDL 130 (130)
T ss_dssp S-CTTCEEEEECSS---SCEEEEEHHHHSTTCCCGGGC
T ss_pred C-CCCcEEEEECCC---CCEEEEEHHHhCcCCCCcccC
Confidence 3 568999999887 444445799999999998876
No 9
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}
Probab=18.55 E-value=56 Score=26.80 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=22.8
Q ss_pred CCCCCC-ChHHHHHHHHhcCCCCCceEEEe
Q 013199 382 NGKCPL-TPLEVGLMLRGMGFDKNTYIFLA 410 (448)
Q Consensus 382 ~G~CPL-TPeEvgl~LraLGf~~~T~IYlA 410 (448)
.|.=|| +|++..-.|+++|.+++|+|-|=
T Consensus 66 ~~~~~lP~~~~~~~~l~~lGI~~~~~VVvY 95 (156)
T d1okga1 66 TARHPLPPCAEFIDWCMANGMAGELPVLCY 95 (156)
T ss_dssp CCSSCCCCHHHHHHHHHHTTCSSSSCEEEE
T ss_pred CCccccCCHHHHHHHHHhccccCCceEEEE
Confidence 344344 78999999999999999987763
No 10
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=16.26 E-value=30 Score=25.23 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=19.8
Q ss_pred hhcCCCCCCChHHHHHHHHhcCCC
Q 013199 379 IRINGKCPLTPLEVGLMLRGMGFD 402 (448)
Q Consensus 379 ~R~~G~CPLTPeEvgl~LraLGf~ 402 (448)
.+..|.. ++++|+.-+|+.|||.
T Consensus 13 ~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 13 NRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHhCCC-CCHHHHHHHHHHcCCc
Confidence 4556776 9999999999999996
Done!