BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013202
(447 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 142/238 (59%), Gaps = 12/238 (5%)
Query: 184 KFSLVASKQMVGIFVTVWMRKELVQHVGHLRITSISRGIMGYLGNKGCISVSMSFHRTSF 243
K++ V ++VGI + +++++E ++ + ++ GIMG +GNKG +++ FH TS
Sbjct: 75 KYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSI 134
Query: 244 CFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLN 303
C V SHLA+ +E + RRN D +I QF C+ S P I +HD ++WLGDLN
Sbjct: 135 CVVNSHLAAHIEEYE--RRNQDYKDICSRMQF---CQPDPSLPPLTISNHDVILWLGDLN 189
Query: 304 YRI-ALSYLDTRKLLEQNDWDALFDKDQLKIEKDAGRVFKGWQEGKIYFAPTYKYSYNSD 362
YRI L +KL+E+ D+ L+ DQLKI+ A VF+G+ EG++ F PTYKY SD
Sbjct: 190 YRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSD 249
Query: 363 TYAGDCIKTKNKRRTPAWCDRILWHGTGIQQLSYIRGES-RFSDHRPVCAMFSVDVEV 419
+ T K R PAWCDRILW G I QLSY + + SDH+PV ++F + V V
Sbjct: 250 DW-----DTSEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVRV 302
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 7 VQSFRVFVATWNVGGKTPHSGLNLDDFLQVDGQS-DIYILGFQEIVPLNAGNVLVIEDNE 65
+Q+FR F T+NV G++P L L +L Q+ D+Y +GFQE+ + D
Sbjct: 2 IQNFRFFAGTYNVNGQSPKECLRL--WLSNGIQAPDVYCVGFQELDL--SKEAFFFHDTP 57
Query: 66 PAGRWLTLINKSLN 79
W +++ L+
Sbjct: 58 KEEEWFKAVSEGLH 71
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 142/238 (59%), Gaps = 12/238 (5%)
Query: 184 KFSLVASKQMVGIFVTVWMRKELVQHVGHLRITSISRGIMGYLGNKGCISVSMSFHRTSF 243
K++ V ++VGI + +++++E ++ + ++ GIMG +GNKG +++ FH TS
Sbjct: 78 KYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSI 137
Query: 244 CFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLN 303
C V SHLA+ +E + RRN D +I QF C+ S P I +HD ++WLGDLN
Sbjct: 138 CVVNSHLAAHIEEYE--RRNQDYKDICSRMQF---CQPDPSLPPLTISNHDVILWLGDLN 192
Query: 304 YRI-ALSYLDTRKLLEQNDWDALFDKDQLKIEKDAGRVFKGWQEGKIYFAPTYKYSYNSD 362
YRI L +KL+E+ D+ L+ DQLKI+ A VF+G+ EG++ F PTYKY SD
Sbjct: 193 YRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSD 252
Query: 363 TYAGDCIKTKNKRRTPAWCDRILWHGTGIQQLSYIRGES-RFSDHRPVCAMFSVDVEV 419
+ T K R PAWCDRILW G I QLSY + + SDH+PV ++F + V V
Sbjct: 253 DW-----DTSEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVRV 305
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 7 VQSFRVFVATWNVGGKTPHSGLNLDDFLQVDGQS-DIYILGFQEIVPLNAGNVLVIEDNE 65
+Q+FR F T+NV G++P L L +L Q+ D+Y +GFQE+ + D
Sbjct: 5 IQNFRFFAGTYNVNGQSPKECLRL--WLSNGIQAPDVYCVGFQELDL--SKEAFFFHDTP 60
Query: 66 PAGRWLTLINKSLN 79
W +++ L+
Sbjct: 61 KEEEWFKAVSEGLH 74
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin In Complex With
Inositol (1,4)-Bisphosphate And Calcium Ion
Length = 347
Score = 134 bits (337), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 125/252 (49%), Gaps = 25/252 (9%)
Query: 190 SKQMVGIFVTVWMRKELVQHVGHLRITSISRGIMGYLGNKGCISVSMSFHRTSFCFVCSH 249
S Q+VG + ++ ++ + + ++ T G+ G GNKG +++ + T CF+ SH
Sbjct: 107 SGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSH 166
Query: 250 LASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYRIALS 309
LA+G DE R+ D I +F + G S I +HD V+W GD NYRI+L+
Sbjct: 167 LAAGYTNYDE--RDHDYRTIASGLRFRR-----GRS----IFNHDYVVWFGDFNYRISLT 215
Query: 310 YLDTRKLLEQNDWDALFDKDQLKIEKDAGRVFKGWQEGKIYFAPTYKYSYNSDTYAGDCI 369
Y + + Q LF+ DQL + G+VF + E I F PTYK+ +D Y
Sbjct: 216 YEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIY----- 270
Query: 370 KTKNKRRTPAWCDRILWHGTGIQQLSYIRGESRFSDHRPVCAMFSVDVEVNEGSSRRKLS 429
T +K R PAW DRIL+ G + SY +SDHRP+ A + ++ K+
Sbjct: 271 DTSDKHRVPAWTDRILYRGELVPH-SYQSVPLYYSDHRPIYATYEANI--------VKVD 321
Query: 430 GSNMKVGIEELW 441
K+ EEL+
Sbjct: 322 REKKKILFEELY 333
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 8 QSFRVFVATWNVGGKTPHSGLNLDDFLQVDGQSDIYILGFQEIVPLNAGNVLVIEDNEPA 67
++ ++FVA++N+ G + + L F + +DIY++GFQEIV L V+ +PA
Sbjct: 23 KNVKIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVI---SADPA 79
Query: 68 GR--WLTLINKSLN 79
R W + + + LN
Sbjct: 80 KRREWESCVKRLLN 93
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 120/243 (49%), Gaps = 12/243 (4%)
Query: 181 TQMKFSLVASKQMVGIFVTVWMRKELVQHVGHLRITSISRGIMGYLGNKGCISVSMSFHR 240
T + + +A + + I V V ++ E + H+ +S+ GI LGNKG + VS F+
Sbjct: 77 TDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNG 136
Query: 241 TSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLG 300
TSF FV HL SG ++ RRN + ++IL+ + + L + W G
Sbjct: 137 TSFGFVNCHLTSGNEK--TARRNQNYLDILRLLSLGD----RQLNAFDISLRFTHLFWFG 190
Query: 301 DLNYRIALSYLDTRKLLEQNDWDALFDKDQLKIEKDAGRVFKGWQEGKIYFAPTYKYSYN 360
DLNYR+ + + + + +++ L DQL +E++ +VF + E +I F PTY+Y
Sbjct: 191 DLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERG 250
Query: 361 S-DTYAGDCIKTKNKR-RTPAWCDRILWHG---TGIQQLSY-IRGESRFSDHRPVCAMFS 414
S DTYA K R P+WCDRILW T I SY + SDH PV F
Sbjct: 251 SRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFE 310
Query: 415 VDV 417
V V
Sbjct: 311 VGV 313
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 122/243 (50%), Gaps = 17/243 (6%)
Query: 185 FSLVASKQMVGIFVTVWMRKELVQHVGHLRITSISRGIMGYLGNKGCISVSMSFHRTSFC 244
+ L++S +++++++R++L+ + ++++ I+ + KG + +S +F TSF
Sbjct: 87 YVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFL 146
Query: 245 FVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPG---SSVPEKILDHDRVIWLGD 301
F+ SH SG+ G R LD ++ P+ SS + D V W GD
Sbjct: 147 FITSHFTSGD--GKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGD 204
Query: 302 LNYRIALSYLDTRKLLEQN---DWDALFDKDQLKIEKDAGRVFKGWQEGKIYFAPTYKYS 358
N+R++ LL Q D AL DQL E G +FKG+QE I+F P+YK+
Sbjct: 205 FNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFD 264
Query: 359 YNSDTYAGDCIKTKNKRRTPAWCDRILW---HGTGIQQLSYIRGES-RFSDHRPVCAMFS 414
DTY + +K+RTP++ DR+L+ H I +SY + SDHRPV +F
Sbjct: 265 IGKDTY-----DSTSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLFR 319
Query: 415 VDV 417
V V
Sbjct: 320 VKV 322
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 8/43 (18%)
Query: 12 VFVATWNVGGK--TPHSGLNLDDFL---QVDGQSDIYILGFQE 49
+FVATWN+ G+ P S LD+FL + D D+Y++G QE
Sbjct: 28 LFVATWNMQGQKELPPS---LDEFLLPAEADYAQDLYVIGVQE 67
>pdb|1NTF|A Chain A, Crystal Structure Of Cimex Nitrophorin
pdb|1Y21|A Chain A, Crystal Structure Of Cimex Nitrophorin No Complex
pdb|1SI6|X Chain X, Crystal Structure Of Cimex Nitrophorin Complex With Co
pdb|1YJH|A Chain A, Crystal Structure Of Cimex Nitrophorin Ferrous No Complex
pdb|2IMQ|X Chain X, Crystal Structure Of Ferrous Cimex Nitrophorin
Length = 282
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 93/190 (48%), Gaps = 29/190 (15%)
Query: 230 GCISVSMSFHRTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEK 289
G I S + + F F S ++ DE DV NT++ R S +K
Sbjct: 116 GGIVTSFTIYNKRFSFTTSRMS------DE-----DVTST--NTKYAYDTRLDYS---KK 159
Query: 290 ILDHDRVIWLGDLNYRIALSYLDTRKLLEQNDWDALFDKDQLKIEKDAGRVFKGWQEGKI 349
D + W+GDLN R+ + + L++QN+ D L DQLK K+ ++F GW E ++
Sbjct: 160 DDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKEQ-KLFDGWTEPQV 218
Query: 350 YFAPTYKYSYNSDTYAGDCIKTKNKRRTPAWCDRILWH-GTG--IQQLSYIR-GESRFSD 405
F PTYK+ N+D Y + TP+W DR L+ GTG IQ LSY + ++
Sbjct: 219 TFKPTYKFKPNTDEY--------DLSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTE 270
Query: 406 HRPVCAMFSV 415
HRPV A F V
Sbjct: 271 HRPVLAKFRV 280
>pdb|3U2P|A Chain A, Crystal Structure Of N-Terminal Three Extracellular
Domains Of Erbb4HER4
Length = 497
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 6 NVQSFRVFVATWNVGGKTPHSGLNLDDFLQVDGQSDIYILGFQEIVPLNAGNVLVIED 63
N+ F VF +GG+ +SGL+ L + Q I L FQ + ++AGN+ + ++
Sbjct: 385 NMTDFSVFSNLVTIGGRVLYSGLS----LLILKQQGITSLQFQSLKEISAGNIYITDN 438
>pdb|3U9U|E Chain E, Crystal Structure Of Extracellular Domain Of Human
Erbb4HER4 IN Complex With The Fab Fragment Of Mab1479
pdb|3U9U|F Chain F, Crystal Structure Of Extracellular Domain Of Human
Erbb4HER4 IN Complex With The Fab Fragment Of Mab1479
Length = 625
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 6 NVQSFRVFVATWNVGGKTPHSGLNLDDFLQVDGQSDIYILGFQEIVPLNAGNVLVIED 63
N+ F VF +GG+ +SGL+ L + Q I L FQ + ++AGN+ + ++
Sbjct: 385 NMTDFSVFSNLVTIGGRVLYSGLS----LLILKQQGITSLQFQSLKEISAGNIYITDN 438
>pdb|2AHX|A Chain A, Crystal Structure Of Erbb4HER4 EXTRACELLULAR DOMAIN
pdb|2AHX|B Chain B, Crystal Structure Of Erbb4HER4 EXTRACELLULAR DOMAIN
Length = 617
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 6 NVQSFRVFVATWNVGGKTPHSGLNLDDFLQVDGQSDIYILGFQEIVPLNAGNVLVIED 63
N+ F VF +GG+ +SGL+ L + Q I L FQ + ++AGN+ + ++
Sbjct: 386 NMTDFSVFSNLVTIGGRVLYSGLS----LLILKQQGITSLQFQSLKEISAGNIYITDN 439
>pdb|3U7U|A Chain A, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|B Chain B, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|C Chain C, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|D Chain D, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|E Chain E, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|F Chain F, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
Length = 615
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 6 NVQSFRVFVATWNVGGKTPHSGLNLDDFLQVDGQSDIYILGFQEIVPLNAGNVLVIED 63
N+ F VF +GG+ +SGL+ L + Q I L FQ + ++AGN+ + ++
Sbjct: 385 NMTDFSVFSNLVTIGGRVLYSGLS----LLILKQQGITSLQFQSLKEISAGNIYITDN 438
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 216 TSISRGIMGYLGNKGC----ISVSMSFHRTSFCFVCSHLASGEKEGDELRRNLDVIEILK 271
TS +R I YL K C I ++ +F R V + S E+E + R+ ++ L+
Sbjct: 257 TSEARKIAXYLCRKVCSASLIEIARAFKRKDHTTVIHAIRSVEEEKKKDRKFKHLVGFLE 316
Query: 272 NTQFPKIC 279
F KIC
Sbjct: 317 KQAFDKIC 324
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 216 TSISRGIMGYLGNKGC----ISVSMSFHRTSFCFVCSHLASGEKEGDELRRNLDVIEILK 271
TS +R I YL K C I ++ +F R V + S E+E + R+ ++ L+
Sbjct: 257 TSEARKIAMYLCRKVCSASLIEIARAFKRKDHTTVIHAIRSVEEEKKKDRKFKHLVGFLE 316
Query: 272 NTQFPKIC 279
F KIC
Sbjct: 317 KQAFDKIC 324
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 216 TSISRGIMGYLGNKGC----ISVSMSFHRTSFCFVCSHLASGEKEGDELRRNLDVIEILK 271
TS +R I YL K C I ++ +F R V + S E+E + R+ ++ L+
Sbjct: 256 TSEARKIAMYLCRKVCSASLIEIARAFKRKDHTTVIHAIRSVEEEKKKDRKFKHLVGFLE 315
Query: 272 NTQFPKIC 279
F KIC
Sbjct: 316 KQAFDKIC 323
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 21 GKTPHSGLNLDDFLQVDGQSDIY 43
G TP+ G+ L+D + DG +D+Y
Sbjct: 134 GSTPYGGVKLEDLIVKDGLTDVY 156
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 21 GKTPHSGLNLDDFLQVDGQSDIY 43
G TP+ G+ L+D + DG +D+Y
Sbjct: 134 GSTPYGGVKLEDLIVKDGLTDVY 156
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 21 GKTPHSGLNLDDFLQVDGQSDIY 43
G TP+ G+ L+D + DG +D+Y
Sbjct: 145 GSTPYGGVKLEDLIVKDGLTDVY 167
>pdb|3QLB|A Chain A, Enantiopyochelin Outer Membrane Tonb-Dependent Transporter
From Pseudomonas Fluorescens Bound To The
Ferri-Enantiopyochelin
pdb|3QLB|B Chain B, Enantiopyochelin Outer Membrane Tonb-Dependent Transporter
From Pseudomonas Fluorescens Bound To The
Ferri-Enantiopyochelin
Length = 748
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 331 LKIEKDAGRVFKGWQEGKIYFAPTYKYSYNSDT 363
+ +E+D+G F ++ K YFAP++ + N DT
Sbjct: 246 VGLERDSGTQFDHIKDDKQYFAPSFTWKPNDDT 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,268,238
Number of Sequences: 62578
Number of extensions: 557348
Number of successful extensions: 1337
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1300
Number of HSP's gapped (non-prelim): 23
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)