Query 013202
Match_columns 447
No_of_seqs 215 out of 1066
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 01:26:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03191 Type I inositol-1,4,5 100.0 1E-106 3E-111 852.9 34.0 429 3-434 101-610 (621)
2 KOG0566 Inositol-1,4,5-triphos 100.0 6.1E-94 1.3E-98 772.5 23.7 311 2-429 529-845 (1080)
3 smart00128 IPPc Inositol polyp 100.0 1.6E-82 3.5E-87 638.8 27.2 297 9-421 2-310 (310)
4 COG5411 Phosphatidylinositol 5 100.0 1.9E-70 4.2E-75 556.9 17.4 311 1-427 21-338 (460)
5 PTZ00312 inositol-1,4,5-tripho 100.0 6E-33 1.3E-37 271.0 10.2 176 225-413 64-356 (356)
6 KOG0565 Inositol polyphosphate 99.9 7.7E-27 1.7E-31 210.3 11.7 142 184-329 2-145 (145)
7 KOG1976 Inositol polyphosphate 99.8 1.2E-21 2.6E-26 192.2 5.3 168 225-416 153-389 (391)
8 PF03372 Exo_endo_phos: Endonu 98.9 2E-10 4.4E-15 106.3 1.1 97 194-308 72-171 (249)
9 PRK05421 hypothetical protein; 98.8 1.9E-07 4.1E-12 92.2 16.1 128 228-416 134-262 (263)
10 PRK11756 exonuclease III; Prov 98.5 6.5E-07 1.4E-11 88.0 11.0 27 228-254 88-114 (268)
11 TIGR00633 xth exodeoxyribonucl 98.4 3.2E-06 7E-11 81.5 12.5 34 13-50 2-36 (255)
12 TIGR03395 sphingomy sphingomye 98.4 3.8E-06 8.2E-11 84.2 13.1 146 226-412 118-282 (283)
13 PRK13911 exodeoxyribonuclease 98.3 8.7E-06 1.9E-10 80.2 12.6 35 13-50 2-36 (250)
14 PTZ00297 pantothenate kinase; 98.1 0.00014 3.1E-09 87.0 18.5 69 226-303 130-205 (1452)
15 TIGR00195 exoDNase_III exodeox 97.9 0.00017 3.6E-09 70.3 12.0 34 13-50 2-35 (254)
16 KOG2756 Predicted Mg2+-depende 97.8 0.00011 2.5E-09 72.6 9.8 62 233-307 196-257 (349)
17 COG0708 XthA Exonuclease III [ 97.8 6.7E-05 1.4E-09 74.4 7.7 33 14-50 3-35 (261)
18 PLN03144 Carbon catabolite rep 97.5 0.0037 8.1E-08 68.9 16.9 65 241-322 417-481 (606)
19 smart00476 DNaseIc deoxyribonu 97.3 0.0055 1.2E-07 61.6 14.1 57 231-306 129-189 (276)
20 COG3568 ElsH Metal-dependent h 97.3 0.0023 5E-08 63.5 11.1 57 227-303 117-174 (259)
21 PRK15251 cytolethal distending 96.5 0.032 6.9E-07 55.9 12.0 55 227-303 140-194 (271)
22 PF14529 Exo_endo_phos_2: Endo 93.5 0.034 7.4E-07 46.9 1.2 33 378-410 86-119 (119)
23 KOG3873 Sphingomyelinase famil 89.9 0.87 1.9E-05 47.4 6.9 195 195-420 79-297 (422)
24 KOG2338 Transcriptional effect 85.9 1.3 2.9E-05 47.6 5.6 94 198-304 204-303 (495)
25 COG3021 Uncharacterized protei 60.4 4.8 0.0001 41.2 1.6 60 227-304 173-233 (309)
26 KOG3870 Uncharacterized conser 41.3 11 0.00024 40.0 0.7 17 290-306 349-365 (434)
27 COG3021 Uncharacterized protei 22.9 2.1E+02 0.0045 29.6 6.2 33 381-415 275-307 (309)
28 PF04430 DUF498: Protein of un 22.8 21 0.00045 30.7 -0.8 34 15-48 29-62 (110)
29 cd00248 Mth938-like Mth938-lik 21.3 33 0.00072 29.5 0.2 33 14-47 28-60 (109)
30 PRK10947 global DNA-binding tr 20.5 55 0.0012 29.7 1.4 24 351-381 93-119 (135)
No 1
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=1.3e-106 Score=852.89 Aligned_cols=429 Identities=40% Similarity=0.733 Sum_probs=350.6
Q ss_pred CCceeeeEEEEEEEeeCCCCCCCCCCCCccccCCCCCCCEEEEeeEEEEecCCCceeeccCCchhhHHHHHHHHHhCCCC
Q 013202 3 SGCNVQSFRVFVATWNVGGKTPHSGLNLDDFLQVDGQSDIYILGFQEIVPLNAGNVLVIEDNEPAGRWLTLINKSLNKSH 82 (447)
Q Consensus 3 ~~~~~~~~~V~vgTWNV~g~~P~~~~dL~~wL~~~~~~DIyviGfQEiV~Lna~nvl~~~d~~~~~~W~~~i~~~Ln~~~ 82 (447)
+||+.+++|||||||||||+.|+.+++|.+||+.++|||||||||||||||||||||+++++.++++|+.+|+++||+..
T Consensus 101 ~y~~~~~~rv~v~TWNV~g~~p~~~l~l~~wl~~~~p~DiyviG~QE~v~lna~nv~~~~~~~~~~~W~~~i~~tl~~~~ 180 (621)
T PLN03191 101 QYINTKDIRVTIGTWNVAGRLPSEDLEIEDWLSTEEPADIYIIGFQEVVPLNAGNVLGAEDSRPIPKWEAIIRRTLNKSN 180 (621)
T ss_pred HhccccceEEEEEEeecCCCCCcccCCHHHhccCCCCCCEEEEeeEEeccCcHhhhhccccCCchhhHHHHHHHHHhccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCCCCcc---------ccc--cchhhhhccchhhh----------hhhhhc---------ccC--CCchh
Q 013202 83 SVSSRRIRSAPSFSNSL---------FFQ--KPSLKKISKNFRTE----------SKRRLK---------MCN--CTPEL 130 (447)
Q Consensus 83 ~~~~~~~~~~~~~~~~~---------~~~--~~~~~~~~~~~~~~----------~~~~~~---------~~~--~~~~~ 130 (447)
++.++++|+|+|+||.. ++. .++.......+... .+.+++ .+. +.+.+
T Consensus 181 ~~~~~~k~~S~ppsp~~~~~~~~~e~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 260 (621)
T PLN03191 181 KPESKHKSYSAPPSPVLRTSIVADELAEEVDSLPLEMMNNEFIDAATGCPSLEPERNKNIGWPEHSLDATPQVVSSNSKL 260 (621)
T ss_pred CCCCccccCCCCCCcccCCcchhhhhhhhcccChhhhcccccccccccccccchhhccccCCcccccccCcccccccccc
Confidence 99999999999999865 111 11111111110000 000000 000 01124
Q ss_pred hHhhhhccccccCCCCCCCCcccCC--------------------------------------CCCCCCCCC--CCCCcc
Q 013202 131 ELERKYNKEFCFPCQQSNNVTVSED--------------------------------------DFSSEEDED--GPSNLE 170 (447)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~--~~~~~~ 170 (447)
.+..+.+.+..+++|+..+...+.+ +..|+.++. .+....
T Consensus 261 ~r~~s~~~r~~~~~~e~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (621)
T PLN03191 261 RRVFSSSARLGFKWPENPSLFSPQRFALNARGLKRSHRSFGNLGLSWNEIKQRSEVPEVPEVIDSLSDVSDRSSEAEDDT 340 (621)
T ss_pred eeeeccccccccCCCCCccccCchhhcccccccchhhhccccccccccchhhcccccccccccccccccccccCCCcccc
Confidence 5666666666666644333211110 000000000 000000
Q ss_pred ccCC---------CCCCCCCCCceEEEEeeehhceeeeEEEeccccccccceEEeeEeecccccccceeEEEEEEEEcCe
Q 013202 171 MTGI---------STPSSTTQMKFSLVASKQMVGIFVTVWMRKELVQHVGHLRITSISRGIMGYLGNKGCISVSMSFHRT 241 (447)
Q Consensus 171 ~~~~---------~~~~~~~~~~Y~~v~s~~lvGi~L~Vfvr~~~~~~I~~v~~~~v~tG~~G~~GNKGaV~ir~~i~~t 241 (447)
...+ .........+|++|.|+||+||+|+||||+++.++|++|++++|+||+||++||||||+|||+++++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~YvkV~S~qLvGl~L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~T 420 (621)
T PLN03191 341 FKEVPSYQLPEDLIKDCRKVKQKYVRIVSKQMVGIYVSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQS 420 (621)
T ss_pred cccCChhhhhhHHHHhhccCCCCEEEEEEEeeeeEEEEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEcCc
Confidence 1111 0112346789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccccccccCHHHHHHHHhhCC
Q 013202 242 SFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYRIALSYLDTRKLLEQND 321 (447)
Q Consensus 242 ~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyRi~l~~~~v~~li~~~~ 321 (447)
+|||||||||||+++.++++||+||.+|++++.|+.... ...+..|.+||+|||||||||||++++++++++|.+++
T Consensus 421 s~cFVn~HLAAg~~~~~~~rRN~D~~~I~~~l~F~~~~~---~~~~~~I~dhD~vFWlGDLNYRIdl~~~ev~~lI~~~~ 497 (621)
T PLN03191 421 RLCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRFSSVLD---TDQPQTIPSHDQIFWFGDLNYRLNMLDTEVRKLVAQKR 497 (621)
T ss_pred EEEEEEeccccccccchHHHHHHHHHHHHhccccCcccc---cCCCccccccceEEEecCccccccCCHHHHHHHHhhcc
Confidence 999999999999988778899999999999999975421 13456788999999999999999999999999999999
Q ss_pred hhHhhccccchHHHHcccccCCccccccccCCccccccCCCCCCCcccccCCcccCcccccceeeecCCeeeeeeccCCC
Q 013202 322 WDALFDKDQLKIEKDAGRVFKGWQEGKIYFAPTYKYSYNSDTYAGDCIKTKNKRRTPAWCDRILWHGTGIQQLSYIRGES 401 (447)
Q Consensus 322 ~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~gt~~Yd~~~~~ts~k~R~PSWcDRIL~~~~~i~~l~Y~~~e~ 401 (447)
|++||++|||+.++++|.+|.||+|++|+|||||||+.|++.||++.++|++|+|+|||||||||++..++++.|.+.++
T Consensus 498 ~~~LL~~DQL~~e~~~g~vF~GF~Eg~I~FpPTYKYd~gSd~Ydg~~~~Ts~KkR~PSWCDRILykg~~i~~l~Y~s~ei 577 (621)
T PLN03191 498 WDELINSDQLIKELRSGHVFDGWKEGPIKFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLCYKRSEI 577 (621)
T ss_pred HHHHHHHhHHHHHHHcCCccCCcccCCccCCCCcccccCCccccccccccccCccccchhheEeecCCCceEeEeccCCc
Confidence 99999999999999999999999999999999999999999999877789999999999999999999999999999999
Q ss_pred CcCCCcCccceEEEEEeecchhhhhhhcCCCce
Q 013202 402 RFSDHRPVCAMFSVDVEVNEGSSRRKLSGSNMK 434 (447)
Q Consensus 402 ~~SDHkPV~a~F~v~v~~i~~~k~~~~~~~~~~ 434 (447)
++||||||+|.|.|+|++++++|++|+.+++..
T Consensus 578 ~~SDHRPV~A~F~v~V~~id~~k~q~~~~~~~a 610 (621)
T PLN03191 578 RLSDHRPVSSMFLVEVEVFDHRKLQRALNVNSA 610 (621)
T ss_pred ccCCchhcceEEEEEEEecCHHHHHhhhhcchh
Confidence 999999999999999999999999999977664
No 2
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-94 Score=772.47 Aligned_cols=311 Identities=39% Similarity=0.708 Sum_probs=293.1
Q ss_pred CCCceeeeEEEEEEEeeCCCCCCCCCCCCccccCCC------CCCCEEEEeeEEEEecCCCceeeccCCchhhHHHHHHH
Q 013202 2 TSGCNVQSFRVFVATWNVGGKTPHSGLNLDDFLQVD------GQSDIYILGFQEIVPLNAGNVLVIEDNEPAGRWLTLIN 75 (447)
Q Consensus 2 ~~~~~~~~~~V~vgTWNV~g~~P~~~~dL~~wL~~~------~~~DIyviGfQEiV~Lna~nvl~~~d~~~~~~W~~~i~ 75 (447)
.+||+.++++||||||||||+.+-...+|.+||-+. .+||||||||||||+||||||+.+ ++...+.|++.|.
T Consensus 529 ~eyt~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLnag~iv~A-s~tk~~~Wee~i~ 607 (1080)
T KOG0566|consen 529 SEYTEPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGFEEVVELNAGNIVSA-STTKRRFWEEKIL 607 (1080)
T ss_pred hhhccccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEeehhhhhcCccceecc-ChHHHHHHHHHHH
Confidence 479999999999999999997765556799999643 379999999999999999999986 6778899999999
Q ss_pred HHhCCCCCCccccccCCCCCCCccccccchhhhhccchhhhhhhhhcccCCCchhhHhhhhccccccCCCCCCCCcccCC
Q 013202 76 KSLNKSHSVSSRRIRSAPSFSNSLFFQKPSLKKISKNFRTESKRRLKMCNCTPELELERKYNKEFCFPCQQSNNVTVSED 155 (447)
Q Consensus 76 ~~Ln~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (447)
++||+.
T Consensus 608 ~~Ln~~-------------------------------------------------------------------------- 613 (1080)
T KOG0566|consen 608 KTLNRY-------------------------------------------------------------------------- 613 (1080)
T ss_pred HHhcCC--------------------------------------------------------------------------
Confidence 999962
Q ss_pred CCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEeeehhceeeeEEEeccccccccceEEeeEeecccccccceeEEEEE
Q 013202 156 DFSSEEDEDGPSNLEMTGISTPSSTTQMKFSLVASKQMVGIFVTVWMRKELVQHVGHLRITSISRGIMGYLGNKGCISVS 235 (447)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~~lvGi~L~Vfvr~~~~~~I~~v~~~~v~tG~~G~~GNKGaV~ir 235 (447)
+.+|+++.|.||+|++|++|+|.++.++|++|..++++||++|+.|||||||||
T Consensus 614 --------------------------~~kYvlL~s~QlvGv~L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAIr 667 (1080)
T KOG0566|consen 614 --------------------------KNKYVLLRSEQLVGVCLLLFIRPDHAPYIKDVAGDTKKTGFGGATGNKGAVAIR 667 (1080)
T ss_pred --------------------------CCceEEEehhhhheeeEEEEEcccccchhhhcccceeecccccccCCCceEEEE
Confidence 246999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccccccccCHHHHHH
Q 013202 236 MSFHRTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYRIALSYLDTRK 315 (447)
Q Consensus 236 ~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyRi~l~~~~v~~ 315 (447)
|.+++|+|||||+|||||+++ +++||.||.+|.++++|++. ..|.+||+|||||||||||+|+++||+.
T Consensus 668 f~~~~TsfCFv~SHlAAG~sn--v~ERn~DY~tI~r~l~Fp~G---------r~I~~HD~ifW~GDFNYRI~l~nEEVr~ 736 (1080)
T KOG0566|consen 668 FVYHATSFCFVCSHLAAGQSN--VEERNEDYKTIARKLRFPRG---------RMIFSHDYIFWLGDFNYRIDLSNEEVRR 736 (1080)
T ss_pred EEeccccEEEEecccccccch--HhhhhhhHHHHHHhccccCC---------ccccCCceEEEecccceeecCCHHHHHH
Confidence 999999999999999999976 77899999999999999862 5688999999999999999999999999
Q ss_pred HHhhCChhHhhccccchHHHHcccccCCccccccccCCccccccCCCCCCCcccccCCcccCcccccceeeecCCeeeee
Q 013202 316 LLEQNDWDALFDKDQLKIEKDAGRVFKGWQEGKIYFAPTYKYSYNSDTYAGDCIKTKNKRRTPAWCDRILWHGTGIQQLS 395 (447)
Q Consensus 316 li~~~~~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~gt~~Yd~~~~~ts~k~R~PSWcDRIL~~~~~i~~l~ 395 (447)
+|.+++|+.|+++|||+++|.+|.+|.||.|++|+|+||||||.||++|| ||+|+|+|||||||||++....+++
T Consensus 737 ~v~~~d~~kL~e~DQL~~q~~~G~vF~gF~E~~ltF~PTYKyD~gTd~YD-----TSeK~R~PAWTDRIL~r~e~~~~l~ 811 (1080)
T KOG0566|consen 737 LVRNQDLDKLLEYDQLTQQMNAGQVFPGFHEGQLTFPPTYKYDPGTDDYD-----TSEKCRTPAWTDRILWRGEKLELLS 811 (1080)
T ss_pred HHHhccHHHHhhHHHHHHHHhcCcccccccccccccCCcccccCCCCccc-----cchhccCccchhhheeccccccccc
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred eccCCCCcCCCcCccceEEEEEeecchhhhhhhc
Q 013202 396 YIRGESRFSDHRPVCAMFSVDVEVNEGSSRRKLS 429 (447)
Q Consensus 396 Y~~~e~~~SDHkPV~a~F~v~v~~i~~~k~~~~~ 429 (447)
|.+.++++||||||+|.|.++|..+|.+||.++-
T Consensus 812 Y~~~el~~SDHRPV~A~~~a~i~~Vd~~kk~~l~ 845 (1080)
T KOG0566|consen 812 YKRAELKTSDHRPVYAIFRAEIFEVDEQKKLRLF 845 (1080)
T ss_pred cccccccccCCCceEEEEEEEEEEEcHHHHHHHH
Confidence 9999999999999999999999999999988754
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=1.6e-82 Score=638.80 Aligned_cols=297 Identities=39% Similarity=0.722 Sum_probs=266.0
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCccccCCC------CCCCEEEEeeEEEEecCCCceeeccCCchhhHHHHHHHHHhCCCC
Q 013202 9 SFRVFVATWNVGGKTPHSGLNLDDFLQVD------GQSDIYILGFQEIVPLNAGNVLVIEDNEPAGRWLTLINKSLNKSH 82 (447)
Q Consensus 9 ~~~V~vgTWNV~g~~P~~~~dL~~wL~~~------~~~DIyviGfQEiV~Lna~nvl~~~d~~~~~~W~~~i~~~Ln~~~ 82 (447)
+++|+|+||||||+.++...+|.+||... .+||||||||||||++++++++. .++.....|...|..+|+.
T Consensus 2 ~~~v~v~TwNv~~~~~~p~~~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~-~~~~~~~~W~~~i~~~l~~-- 78 (310)
T smart00128 2 DIKVLVGTWNVGGLKADPKVDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLE-TIAGKERLWSKLIESSLNG-- 78 (310)
T ss_pred ceEEEEEEEECCCccCCChhhHHHhhccccccccCCCCCEEEEEeeeecccchhhhhh-ccchhHHHHHHHHHHhcCC--
Confidence 68999999999998633345688999752 57999999999999999999875 4567788999998888763
Q ss_pred CCccccccCCCCCCCccccccchhhhhccchhhhhhhhhcccCCCchhhHhhhhccccccCCCCCCCCcccCCCCCCCCC
Q 013202 83 SVSSRRIRSAPSFSNSLFFQKPSLKKISKNFRTESKRRLKMCNCTPELELERKYNKEFCFPCQQSNNVTVSEDDFSSEED 162 (447)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (447)
T Consensus 79 -------------------------------------------------------------------------------- 78 (310)
T smart00128 79 -------------------------------------------------------------------------------- 78 (310)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCCCCCCCCCCceEEEEeeehhceeeeEEEeccccccccceEEeeEeecccccccceeEEEEEEEEcCeE
Q 013202 163 EDGPSNLEMTGISTPSSTTQMKFSLVASKQMVGIFVTVWMRKELVQHVGHLRITSISRGIMGYLGNKGCISVSMSFHRTS 242 (447)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~~lvGi~L~Vfvr~~~~~~I~~v~~~~v~tG~~G~~GNKGaV~ir~~i~~t~ 242 (447)
+.+|.+|++.+|+||+|+||+|.++.++|++|.++.+++|++|.+||||||+++|++.+++
T Consensus 79 -------------------~~~Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~ 139 (310)
T smart00128 79 -------------------DGQYNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTS 139 (310)
T ss_pred -------------------CCceEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcE
Confidence 1359999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccccccccCH-HHHHHHHhhCC
Q 013202 243 FCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYRIALSY-LDTRKLLEQND 321 (447)
Q Consensus 243 ~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyRi~l~~-~~v~~li~~~~ 321 (447)
||||||||+||+.+ .++||+||.+|++++.|+... ...+.++|++||||||||||+++. ++++++|+.++
T Consensus 140 ~~fv~~HL~a~~~~--~~~R~~~~~~I~~~~~f~~~~-------~~~~~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~~ 210 (310)
T smart00128 140 FCFVNSHLAAGASN--VEQRNQDYKTILRALSFPERA-------ELSQFDHDVVFWFGDLNFRLDSPSYEEVRRKISKKE 210 (310)
T ss_pred EEEEeeccccccch--hhhhHHHHHHHHHhcCCCCCc-------cccccccceEEEecCcceeecCCCHHHHHHHHhhCc
Confidence 99999999999875 789999999999999987521 112568999999999999999987 89999999999
Q ss_pred hhHhhccccchHHHHcccccCCccccccccCCccccc-cCCCCCCCcccccCCcccCcccccceeeec--CCeeeee-ec
Q 013202 322 WDALFDKDQLKIEKDAGRVFKGWQEGKIYFAPTYKYS-YNSDTYAGDCIKTKNKRRTPAWCDRILWHG--TGIQQLS-YI 397 (447)
Q Consensus 322 ~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~-~gt~~Yd~~~~~ts~k~R~PSWcDRIL~~~--~~i~~l~-Y~ 397 (447)
|.+|+++|||+.+++++.+|.||.|++|+|||||||+ .|++.|| +++|+|+|||||||||+. ..+.++. |.
T Consensus 211 ~~~Ll~~DQL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~~t~~Yd-----~~~k~R~PsWcDRIL~~~~~~~~~~~~~Y~ 285 (310)
T smart00128 211 FDDLLEKDQLNRQKEAGKVFKGFQEGPITFPPTYKYDSVGTETYD-----TSEKKRVPAWCDRILYRSNGPNLIQLSEYH 285 (310)
T ss_pred HHHHhhhhhHHHHhhcccccCcCccCCcCCCCCeeecCCCCcccc-----CcccccCcchhheehhhccCCCceeccccc
Confidence 9999999999999999999999999999999999999 9999999 889999999999999995 3455555 87
Q ss_pred c-CCCCcCCCcCccceEEEEEeecc
Q 013202 398 R-GESRFSDHRPVCAMFSVDVEVNE 421 (447)
Q Consensus 398 ~-~e~~~SDHkPV~a~F~v~v~~i~ 421 (447)
+ .++++||||||+|.|.|.++.++
T Consensus 286 s~~~~~~SDHkPV~~~f~v~~~~~~ 310 (310)
T smart00128 286 SGMELTTSDHKPVFATFRLKVTAVD 310 (310)
T ss_pred CCCccCCcCcccccEEEEEEEEecC
Confidence 6 68999999999999999998774
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-70 Score=556.86 Aligned_cols=311 Identities=35% Similarity=0.587 Sum_probs=284.0
Q ss_pred CCCCceeeeEEEEEEEeeCCCCCCCCCCCCccccCC----CCCCCEEEEeeEEEEecCCCceeeccCCchhhHHHHHHHH
Q 013202 1 MTSGCNVQSFRVFVATWNVGGKTPHSGLNLDDFLQV----DGQSDIYILGFQEIVPLNAGNVLVIEDNEPAGRWLTLINK 76 (447)
Q Consensus 1 ~~~~~~~~~~~V~vgTWNV~g~~P~~~~dL~~wL~~----~~~~DIyviGfQEiV~Lna~nvl~~~d~~~~~~W~~~i~~ 76 (447)
|++|+..+++++|++|+|.+|+.| ..+++.||-+ ...+|+||+||||+|+|++|++|...-......|++.+..
T Consensus 21 ~sk~~~~~~~~~f~~~~n~~~~~~--k~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~sils~~p~~rl~~wes~~~~ 98 (460)
T COG5411 21 RSKYVIEKDVSIFVSTFNPPGKPP--KASTKRWLFPEIEATELADLYVVGLQEVVELTPGSILSADPYDRLRIWESKVLD 98 (460)
T ss_pred hhhheeecceeeEeccccCCCCCc--hhhhhhhcccccccccccceEEeccceeeeccchhhccCCcccccchhHHHHHH
Confidence 568899999999999999999988 3457888876 2479999999999999999999986534556899999999
Q ss_pred HhCCCCCCccccccCCCCCCCccccccchhhhhccchhhhhhhhhcccCCCchhhHhhhhccccccCCCCCCCCcccCCC
Q 013202 77 SLNKSHSVSSRRIRSAPSFSNSLFFQKPSLKKISKNFRTESKRRLKMCNCTPELELERKYNKEFCFPCQQSNNVTVSEDD 156 (447)
Q Consensus 77 ~Ln~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (447)
.||.. +
T Consensus 99 ~Ln~~-~------------------------------------------------------------------------- 104 (460)
T COG5411 99 CLNGA-Q------------------------------------------------------------------------- 104 (460)
T ss_pred Hhccc-c-------------------------------------------------------------------------
Confidence 99851 0
Q ss_pred CCCCCCCCCCCCccccCCCCCCCCCCCceEEEEeeehhceeeeEEEeccccccccceEEeeEeecccccccceeEEEEEE
Q 013202 157 FSSEEDEDGPSNLEMTGISTPSSTTQMKFSLVASKQMVGIFVTVWMRKELVQHVGHLRITSISRGIMGYLGNKGCISVSM 236 (447)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~~lvGi~L~Vfvr~~~~~~I~~v~~~~v~tG~~G~~GNKGaV~ir~ 236 (447)
..++|.++.+.||+|+++.||.+.+-...+.+|..+..+||++|..+|||+|+++|
T Consensus 105 ------------------------~~eky~~l~s~q~~~~~~~vf~~~~~~~v~~~V~~~~~KtG~gg~s~nKGav~i~~ 160 (460)
T COG5411 105 ------------------------SDEKYSLLRSPQLGGILLRVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGAVAIRF 160 (460)
T ss_pred ------------------------cCCceEEecchhccCcceEEeeeccccceeccccccccccccceecccccccceeE
Confidence 12579999999999999999999999999999999999999999999999999999
Q ss_pred EEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccccccccCHHHHHHH
Q 013202 237 SFHRTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYRIALSYLDTRKL 316 (447)
Q Consensus 237 ~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyRi~l~~~~v~~l 316 (447)
.+..+.+|||||||+||.++ .++|+.||..|.+.+.|.+. ..|.+||++||+|||||||++.+++++..
T Consensus 161 ~~~~t~~cFv~shlaag~~N--~eeR~~Dy~~I~~~i~f~~g---------~~I~~hdti~w~GDlNyRVts~~e~v~~~ 229 (460)
T COG5411 161 NYERTSFCFVNSHLAAGVNN--IEERIFDYRSIASNICFSRG---------LRIYDHDTIFWLGDLNYRVTSTNEEVRPE 229 (460)
T ss_pred EeecCCcEEEecchhccccc--HHHHHHHHHHHHHheecCCC---------ceecccceEEEecccCceeecCchhcchh
Confidence 99999999999999999865 77899999999999999752 46789999999999999999999999998
Q ss_pred HhhCC--hhHhhccccchHHHHcccccCCccccccccCCccccccCCCCCCCcccccCCcccCcccccceeeecCCeeee
Q 013202 317 LEQND--WDALFDKDQLKIEKDAGRVFKGWQEGKIYFAPTYKYSYNSDTYAGDCIKTKNKRRTPAWCDRILWHGTGIQQL 394 (447)
Q Consensus 317 i~~~~--~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~gt~~Yd~~~~~ts~k~R~PSWcDRIL~~~~~i~~l 394 (447)
+...+ +.+|+++|||+.+++.|.+|.+|+|..|+|||||||+.|+++|| +++|.|+|||||||||++....+.
T Consensus 230 ~~~~~g~~~~l~~~DqL~~e~~~g~~f~~f~E~~i~FpPTYKfd~gt~~yd-----tsdk~RiPsWtDRIl~~s~~~~p~ 304 (460)
T COG5411 230 IASDDGRLDKLFEYDQLLWEMEVGNVFPGFKEPVITFPPTYKFDYGTDEYD-----TSDKGRIPSWTDRILYKSEQLTPH 304 (460)
T ss_pred hhCCcchhhhhhhhhhHhhhhcccccccceecccccCCCceEeecCCcccc-----ccccccCCchhhhhhhhccccccc
Confidence 88777 78899999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred eeccCC-CCcCCCcCccceEEEEEeecchhhhhh
Q 013202 395 SYIRGE-SRFSDHRPVCAMFSVDVEVNEGSSRRK 427 (447)
Q Consensus 395 ~Y~~~e-~~~SDHkPV~a~F~v~v~~i~~~k~~~ 427 (447)
+|.+.. +++||||||+|.|.+.+...|.+++.-
T Consensus 305 sY~sip~l~~SDHrPV~a~~~~~i~~~d~~~k~~ 338 (460)
T COG5411 305 SYSSIPHLMISDHRPVYATFRAKIKVVDPSKKEG 338 (460)
T ss_pred cccccCceeecCCCeEEEEEecceEEeCcchhhh
Confidence 999865 999999999999999999999887543
No 5
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.98 E-value=6e-33 Score=271.01 Aligned_cols=176 Identities=23% Similarity=0.348 Sum_probs=132.8
Q ss_pred cccceeEEEEEEEEcCeEEEEEeecCCCCCCCcc---------HHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccc
Q 013202 225 YLGNKGCISVSMSFHRTSFCFVCSHLASGEKEGD---------ELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDR 295 (447)
Q Consensus 225 ~~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~---------~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~ 295 (447)
.++.||.+.+|++|+++.|||||+||.++..+.. ...|..++..||.+.. ..+..+++
T Consensus 64 kwSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~-------------~~~~~~~~ 130 (356)
T PTZ00312 64 GRSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECS-------------AFISPSDP 130 (356)
T ss_pred CccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHh-------------hccCCCCc
Confidence 4899999999999999999999999999987632 3467888988887532 12345799
Q ss_pred eEEEcccccccccCH-HH-HH------HHHh------hCChhHhhccccchHHHHc-------------ccccCCccccc
Q 013202 296 VIWLGDLNYRIALSY-LD-TR------KLLE------QNDWDALFDKDQLKIEKDA-------------GRVFKGWQEGK 348 (447)
Q Consensus 296 vfw~GDLNyRi~l~~-~~-v~------~li~------~~~~~~Ll~~DQL~~~~~~-------------g~~F~gf~E~~ 348 (447)
+|||||||||++... .+ ++ ..++ ...|.+||+.|||..+++. .+.|.++.|+|
T Consensus 131 lF~fGDfNyRld~~~~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQl~rE~~~fd~e~q~l~~~va~~s~~eLaE~p 210 (356)
T PTZ00312 131 LFIFGDFNVRLDGHNLLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQTQGEIRRFDLELQRLMDVVAQQSGVELAEFA 210 (356)
T ss_pred EEEeccceeeeccccHHHHhcccccccccccccccCChHHHHHHhcChhhhHHHhhhhhhhhhhhhhhhhhcccchhccc
Confidence 999999999999532 11 11 1112 2358999999999999985 56788999999
Q ss_pred cccCCcccccc-----C-----------CCCC---------CCcc----------------------------cccCCcc
Q 013202 349 IYFAPTYKYSY-----N-----------SDTY---------AGDC----------------------------IKTKNKR 375 (447)
Q Consensus 349 I~F~PTYKy~~-----g-----------t~~Y---------d~~~----------------------------~~ts~k~ 375 (447)
|+||||||-.. + ...| +.+. ...+.+.
T Consensus 211 I~FpPTYkrva~r~~~~~~~~~a~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~g~~d~i~~~~~l~~~ta~P~r~~~~~ 290 (356)
T PTZ00312 211 IRFPPTYPRVAERTNTGAQIESAGANVAASVYGVKDVAAKLDNQQRKKAAKDLKGTADAILASVVLTRVTAIPHRNYCRD 290 (356)
T ss_pred ccCCCcchhhhhhcCCcchhhhcccccccchhcccccccccccccccchhhhccCccceeeeeeeeecccccCCcchhcc
Confidence 99999999321 1 1111 1000 1478899
Q ss_pred cCcccccceeeecCC----------------------------eeeeeeccCCCCcCCCcCccceE
Q 013202 376 RTPAWCDRILWHGTG----------------------------IQQLSYIRGESRFSDHRPVCAMF 413 (447)
Q Consensus 376 R~PSWcDRIL~~~~~----------------------------i~~l~Y~~~e~~~SDHkPV~a~F 413 (447)
|+|||||||||.... .+.+.|.+.++.++||.||+..|
T Consensus 291 r~pawcdrvl~~~~~~~~~~~~r~~~a~~~~~aa~~~~~~~~~~~~~~Y~s~~L~htDH~~V~~lF 356 (356)
T PTZ00312 291 RLPAWCDRVLWNPAGLELMTGDRSRSASPQSAAASKGDQASGQSCRYAYRSIDLIHTDHDGVFLLF 356 (356)
T ss_pred cchhhhheeeechhhhhhhcCccccCCCcchhhhccCCcccchhhhheeeeeeeeeccCccceecC
Confidence 999999999997421 34567888999999999999876
No 6
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.7e-27 Score=210.31 Aligned_cols=142 Identities=45% Similarity=0.776 Sum_probs=124.7
Q ss_pred ceEEEEeeehhceeeeEEEeccccccccceEEeeEeecccccccceeEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHH
Q 013202 184 KFSLVASKQMVGIFVTVWMRKELVQHVGHLRITSISRGIMGYLGNKGCISVSMSFHRTSFCFVCSHLASGEKEGDELRRN 263 (447)
Q Consensus 184 ~Y~~v~s~~lvGi~L~Vfvr~~~~~~I~~v~~~~v~tG~~G~~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn 263 (447)
.|+.+.+.+|+|+.+.+|++.++..++.++++.++++|++|++||||+|++++.++++.+|||+|||+||.++.. ++||
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~-~~r~ 80 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVY-ERRN 80 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhH-HHhh
Confidence 499999999999999999999999999999999999999999999999999999999999999999999988743 3399
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCccccC-ccceEEEcccccccccC-HHHHHHHHhhCChhHhhccc
Q 013202 264 LDVIEILKNTQFPKICRTPGSSVPEKILD-HDRVIWLGDLNYRIALS-YLDTRKLLEQNDWDALFDKD 329 (447)
Q Consensus 264 ~d~~~I~~~~~F~~~~~~~~~~~~~~i~~-~d~vfw~GDLNyRi~l~-~~~v~~li~~~~~~~Ll~~D 329 (447)
+||.+|+..+.|+..... ..+..+.. ||.|||+||||||+..+ ..++...+....++.|+++|
T Consensus 81 ~d~~~i~~~~~~~~~~~~---~~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~~~~~l~~~d 145 (145)
T KOG0565|consen 81 EDYQEILNGLRFPSVSPA---SEPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVKSRDGLLEKD 145 (145)
T ss_pred ccHHHHHhhccccccCcc---cccccccccccEEEEecceeeeecCcccccchhhhhhcchhhhhccC
Confidence 999999999999854321 12222222 89999999999999987 78888889999988888876
No 7
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=99.84 E-value=1.2e-21 Score=192.17 Aligned_cols=168 Identities=28% Similarity=0.419 Sum_probs=108.8
Q ss_pred cccceeEEEEEEEEcCeEEEEEeecCCCCCCCcc---------HHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccc
Q 013202 225 YLGNKGCISVSMSFHRTSFCFVCSHLASGEKEGD---------ELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDR 295 (447)
Q Consensus 225 ~~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~---------~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~ 295 (447)
.++.||-.-.||+|.+..|.|||.||-...++.. -..|.+...-++..+. +.-+..|.
T Consensus 153 ~~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~-------------~~~~~~~~ 219 (391)
T KOG1976|consen 153 ANQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELD-------------EEGLRNDA 219 (391)
T ss_pred hhhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHH-------------hhccCceE
Confidence 3689999999999999999999999976654311 1123333333333321 11234678
Q ss_pred eEEEcccccccccCH-----------HHHHH--------HH---------------hhCChh-------------Hhhcc
Q 013202 296 VIWLGDLNYRIALSY-----------LDTRK--------LL---------------EQNDWD-------------ALFDK 328 (447)
Q Consensus 296 vfw~GDLNyRi~l~~-----------~~v~~--------li---------------~~~~~~-------------~Ll~~ 328 (447)
+|.|||||||++... +.+.+ +| +.+.|+ .++.+
T Consensus 220 ~fVfGdfNfrLds~s~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~l~vEkk~FDyfnh~~f~d~~r~~~~~~ 299 (391)
T KOG1976|consen 220 IFVFGDFNFRLDSTSLLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVTLTVEKKRFDYFNHDWFFDLGRGMVKRY 299 (391)
T ss_pred EEEecccccccchHHHHHHHhcCCccchhhhcccCcceeeEEeecccCCceeEEEeehhhcchhhhHHHHHcCchhhhhc
Confidence 999999999998431 01111 11 111111 12222
Q ss_pred ccchHHHHcccccCC-ccccccccCCccccccCCCCCCCcccccCCcccCcccccceeeecCC----------eeeeeec
Q 013202 329 DQLKIEKDAGRVFKG-WQEGKIYFAPTYKYSYNSDTYAGDCIKTKNKRRTPAWCDRILWHGTG----------IQQLSYI 397 (447)
Q Consensus 329 DQL~~~~~~g~~F~g-f~E~~I~F~PTYKy~~gt~~Yd~~~~~ts~k~R~PSWcDRIL~~~~~----------i~~l~Y~ 397 (447)
|- .-..|+. ..|..|.|||||.|..+...- .+.++.|+||||||||+.... .+.+.|.
T Consensus 300 dk------El~nf~~kl~E~~i~FpPsypysed~~~~-----E~~m~TrcPAWcDRILmn~~a~eLv~~~e~e~~~~~Y~ 368 (391)
T KOG1976|consen 300 DK------ELANFAFKLKEETIFFPPSYPYSEDDSGK-----EEFMRTRCPAWCDRILMNDRANELVKHDEFEASGLYYG 368 (391)
T ss_pred ch------HHHHHHHHHhheeecCCCCCCCCcCccch-----HHHHhccChHhhhhhhcCccHHHHhhccccCcccceec
Confidence 21 1123443 889999999999997654322 156899999999999997642 2346677
Q ss_pred c--CCCCcCCCcCccceEEEE
Q 013202 398 R--GESRFSDHRPVCAMFSVD 416 (447)
Q Consensus 398 ~--~e~~~SDHkPV~a~F~v~ 416 (447)
. ++.++.|||||++.|.|-
T Consensus 369 ~vg~e~c~GdHKpVfl~~~i~ 389 (391)
T KOG1976|consen 369 LVGEEKCVGDHKPVFLHASIC 389 (391)
T ss_pred ccccccccCCCcceEEEEeec
Confidence 5 578999999999999874
No 8
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.94 E-value=2e-10 Score=106.34 Aligned_cols=97 Identities=26% Similarity=0.243 Sum_probs=52.7
Q ss_pred hceeeeEEEeccccccccceEEeeEeeccc---ccccceeEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHH
Q 013202 194 VGIFVTVWMRKELVQHVGHLRITSISRGIM---GYLGNKGCISVSMSFHRTSFCFVCSHLASGEKEGDELRRNLDVIEIL 270 (447)
Q Consensus 194 vGi~L~Vfvr~~~~~~I~~v~~~~v~tG~~---G~~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~ 270 (447)
.+..++|+.|.++...+..........+.. ....+++.+.+++. +..|+++|+|+.+... .|..+..+++
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~-----~~~~~~~~~~ 144 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSND-----ERQEQWRELL 144 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHH-----HHHHHHHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccch-----hhhhhhhhhh
Confidence 456678888887654443333322222322 23456677777666 9999999999998532 2222222333
Q ss_pred HhCCCCCCCCCCCCCCCccccCccceEEEccccccccc
Q 013202 271 KNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYRIAL 308 (447)
Q Consensus 271 ~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyRi~l 308 (447)
..+.- .. .......+|++||||.+.+-
T Consensus 145 ~~~~~--~~---------~~~~~~~~iv~GDfN~~~~~ 171 (249)
T PF03372_consen 145 ARIQK--IY---------ADNPNEPVIVMGDFNSRPDS 171 (249)
T ss_dssp HHHHH--HH---------HTSSCCEEEEEEE-SS-BSS
T ss_pred hhhhh--cc---------cccccceEEEEeecccCCcc
Confidence 32210 00 00001169999999998874
No 9
>PRK05421 hypothetical protein; Provisional
Probab=98.79 E-value=1.9e-07 Score=92.18 Aligned_cols=128 Identities=17% Similarity=0.196 Sum_probs=73.9
Q ss_pred ceeEEEEEEEE-cCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEccccccc
Q 013202 228 NKGCISVSMSF-HRTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYRI 306 (447)
Q Consensus 228 NKGaV~ir~~i-~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyRi 306 (447)
-||++.+.+.+ .+..+.++|+||.+.... ...|..+...|.+.+. . ....+|++||||-.-
T Consensus 134 ~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~--~~~r~~q~~~l~~~~~--~--------------~~~p~Il~GDFN~~~ 195 (263)
T PRK05421 134 PKSALITEYPLPNGRTLLVVNIHAINFSLG--VDVYSKQLEPIGDQIA--H--------------HSGPVILAGDFNTWS 195 (263)
T ss_pred cceeEEEEEEeCCCCEEEEEEECccccCcC--hHHHHHHHHHHHHHHH--h--------------CCCCEEEEcccccCc
Confidence 48999999998 667899999999875322 3456677777765431 0 024699999999421
Q ss_pred ccCHHHHHHHHhhCChhHhhccccchHHHHcccccCCccccccccCCccccccCCCCCCCcccccCCcccCcccccceee
Q 013202 307 ALSYLDTRKLLEQNDWDALFDKDQLKIEKDAGRVFKGWQEGKIYFAPTYKYSYNSDTYAGDCIKTKNKRRTPAWCDRILW 386 (447)
Q Consensus 307 ~l~~~~v~~li~~~~~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~gt~~Yd~~~~~ts~k~R~PSWcDRIL~ 386 (447)
.........+++.. ++.. .+|++.-.+ ..+ ..|+ |+||.
T Consensus 196 ~~~~~~l~~~~~~~----------------------~l~~--~~~~~~~~~----~~~---------~~~I----D~I~~ 234 (263)
T PRK05421 196 RKRMNALKRFAREL----------------------GLKE--VRFTDDQRR----RAF---------GRPL----DFVFY 234 (263)
T ss_pred ccchHHHHHHHHHc----------------------CCCc--cCcCCcccc----ccc---------CCCc----ceEEE
Confidence 11111111111110 1111 134332111 001 1233 99998
Q ss_pred ecCCeeeeeeccCCCCcCCCcCccceEEEE
Q 013202 387 HGTGIQQLSYIRGESRFSDHRPVCAMFSVD 416 (447)
Q Consensus 387 ~~~~i~~l~Y~~~e~~~SDHkPV~a~F~v~ 416 (447)
+ ++...++.-.+...|||+||.|.|.+.
T Consensus 235 ~--~~~v~~~~v~~~~~SDH~Pv~a~l~l~ 262 (263)
T PRK05421 235 R--GLNVSKASVLVTRASDHNPLLVEFSLK 262 (263)
T ss_pred C--CcEEEEEEcCCCCCCCccCEEEEEEec
Confidence 5 455555555567899999999998764
No 10
>PRK11756 exonuclease III; Provisional
Probab=98.52 E-value=6.5e-07 Score=87.98 Aligned_cols=27 Identities=11% Similarity=0.236 Sum_probs=21.7
Q ss_pred ceeEEEEEEEEcCeEEEEEeecCCCCC
Q 013202 228 NKGCISVSMSFHRTSFCFVCSHLASGE 254 (447)
Q Consensus 228 NKGaV~ir~~i~~t~~~FVn~HLaA~~ 254 (447)
..+.+.+++...+..|.|+|+|++.+.
T Consensus 88 ~~r~l~~~i~~~~g~~~v~n~y~P~~~ 114 (268)
T PRK11756 88 QRRIIMATIPTPNGNLTVINGYFPQGE 114 (268)
T ss_pred cCCEEEEEEEcCCCCEEEEEEEecCCC
Confidence 457888888886656999999998764
No 11
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.40 E-value=3.2e-06 Score=81.45 Aligned_cols=34 Identities=35% Similarity=0.589 Sum_probs=22.9
Q ss_pred EEEEeeCCCCCCCCCCCC-ccccCCCCCCCEEEEeeEEE
Q 013202 13 FVATWNVGGKTPHSGLNL-DDFLQVDGQSDIYILGFQEI 50 (447)
Q Consensus 13 ~vgTWNV~g~~P~~~~dL-~~wL~~~~~~DIyviGfQEi 50 (447)
-|.||||+|...... .+ .+||... .||| |+|||+
T Consensus 2 ri~t~Nv~g~~~~~~-~~~~~~l~~~-~~DI--v~LQE~ 36 (255)
T TIGR00633 2 KIISWNVNGLRARLH-KLFLDWLKEE-QPDV--LCLQET 36 (255)
T ss_pred EEEEEecccHHHHhh-ccHHHHHHhc-CCCE--EEEEec
Confidence 478999999654322 24 6676643 5787 568997
No 12
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=98.40 E-value=3.8e-06 Score=84.19 Aligned_cols=146 Identities=20% Similarity=0.264 Sum_probs=85.6
Q ss_pred ccceeEEEEEEEEcCeEEEEEeecCCCCCCC----ccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcc
Q 013202 226 LGNKGCISVSMSFHRTSFCFVCSHLASGEKE----GDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGD 301 (447)
Q Consensus 226 ~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~----~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GD 301 (447)
..+||.+.+++.+.+..+.++|.||.+.... .....|..+..+|.+.+.-. . +-..+.+|++||
T Consensus 118 ~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~--------~----~~~~~pvIl~GD 185 (283)
T TIGR03395 118 LSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSK--------N----IPKDETVLIGGD 185 (283)
T ss_pred ccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhc--------c----CCCCceEEEEee
Confidence 5789999999999999999999999985321 11356888888887653210 1 112356999999
Q ss_pred cccccccCHHHHHHHHhhCChhHhhccccchHHHHcccccCCccccccccCCccccccCCCCCCCcccccCCcccCcccc
Q 013202 302 LNYRIALSYLDTRKLLEQNDWDALFDKDQLKIEKDAGRVFKGWQEGKIYFAPTYKYSYNSDTYAGDCIKTKNKRRTPAWC 381 (447)
Q Consensus 302 LNyRi~l~~~~v~~li~~~~~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~gt~~Yd~~~~~ts~k~R~PSWc 381 (447)
||..=+. .+...++.. |..++ .+|. .|.|-||+.++.|... .+. +=.|.+-
T Consensus 186 fN~~~~s--~~~~~ml~~------l~~~~-----------p~~~------g~~~T~d~~~N~~a~~---~~~-~~~~~~l 236 (283)
T TIGR03395 186 LNVNKGS--NEYHDMFKT------LNVSE-----------PRYV------GVPATWDATTNSIAKY---YYP-KEEPEYL 236 (283)
T ss_pred CCCCCCC--HHHHHHHHH------hcccC-----------CCcC------CCCCCcCCCcCchhhh---hcC-CCCcceE
Confidence 9975432 222222211 11111 1121 1344556666655421 111 2347799
Q ss_pred cceeeecCC-----e-----eeeeec----c-CCCCcCCCcCccce
Q 013202 382 DRILWHGTG-----I-----QQLSYI----R-GESRFSDHRPVCAM 412 (447)
Q Consensus 382 DRIL~~~~~-----i-----~~l~Y~----~-~e~~~SDHkPV~a~ 412 (447)
||||++... . ...+.. . .-...|||-||+|.
T Consensus 237 Dyvl~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sdh~~v~~~ 282 (283)
T TIGR03395 237 DYIFVSKSHAQPPVWQNKVLDPKSVTSWFKKYTYDDFSDHYPVYGF 282 (283)
T ss_pred EEEEEECCCCCCccccceEEeccccccccccccccccccccceeee
Confidence 999998542 1 111111 1 13468999999874
No 13
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=98.29 E-value=8.7e-06 Score=80.23 Aligned_cols=35 Identities=26% Similarity=0.439 Sum_probs=25.6
Q ss_pred EEEEeeCCCCCCCCCCCCccccCCCCCCCEEEEeeEEE
Q 013202 13 FVATWNVGGKTPHSGLNLDDFLQVDGQSDIYILGFQEI 50 (447)
Q Consensus 13 ~vgTWNV~g~~P~~~~dL~~wL~~~~~~DIyviGfQEi 50 (447)
-|+||||||-.-.....+.+||. ...||| |+|||+
T Consensus 2 ki~swNVNgir~~~~~~~~~~l~-~~~~DI--iclQEt 36 (250)
T PRK13911 2 KLISWNVNGLRACMTKGFMDFFN-SVDADV--FCIQES 36 (250)
T ss_pred EEEEEEeCChhHhhhhhHHHHHH-hcCCCE--EEEEee
Confidence 37899999986443334778987 446887 678997
No 14
>PTZ00297 pantothenate kinase; Provisional
Probab=98.06 E-value=0.00014 Score=87.00 Aligned_cols=69 Identities=12% Similarity=0.165 Sum_probs=41.3
Q ss_pred ccceeEEEEEEEEc----C-eEEEEEeecCCCCCCCccHHHHHHHHHHHHHh-C-CCCCCCCCCCCCCCccccCccceEE
Q 013202 226 LGNKGCISVSMSFH----R-TSFCFVCSHLASGEKEGDELRRNLDVIEILKN-T-QFPKICRTPGSSVPEKILDHDRVIW 298 (447)
Q Consensus 226 ~GNKGaV~ir~~i~----~-t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~-~-~F~~~~~~~~~~~~~~i~~~d~vfw 298 (447)
..+||.+.+.+.+. + ..+-|+|.||.+........+|.....+++.. + .|.. ...+.....+|+
T Consensus 130 ~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~~~R~~Q~~ql~~~i~~~i~~~~~---------~~~~~~~~PvIL 200 (1452)
T PTZ00297 130 SVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSLPSTSSQVQETRRFVESVIANVYE---------QNNDGAEIPFVI 200 (1452)
T ss_pred ccccceEEEEEEccccCCCCceEEEEEeCCCCCCCcchHHHHHHHHHHHHHHhhhhhcc---------cccCCCCCCEEE
Confidence 35899999999884 2 57999999999875432222333333344332 1 1100 001113357999
Q ss_pred Ecccc
Q 013202 299 LGDLN 303 (447)
Q Consensus 299 ~GDLN 303 (447)
+||||
T Consensus 201 aGDFN 205 (1452)
T PTZ00297 201 AGDFN 205 (1452)
T ss_pred EeeCC
Confidence 99999
No 15
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=97.85 E-value=0.00017 Score=70.27 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=23.1
Q ss_pred EEEEeeCCCCCCCCCCCCccccCCCCCCCEEEEeeEEE
Q 013202 13 FVATWNVGGKTPHSGLNLDDFLQVDGQSDIYILGFQEI 50 (447)
Q Consensus 13 ~vgTWNV~g~~P~~~~dL~~wL~~~~~~DIyviGfQEi 50 (447)
-|.||||+|..... ..+..||... .|||++ |||+
T Consensus 2 ri~t~Ni~g~~~~~-~~~~~~l~~~-~~DIi~--LQE~ 35 (254)
T TIGR00195 2 KIISWNVNGLRARL-HKGLAWLKEN-QPDVLC--LQET 35 (254)
T ss_pred EEEEEEcCcHHHhH-HHHHHHHHhc-CCCEEE--EEec
Confidence 37899999965322 1256677643 579865 9996
No 16
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=97.80 E-value=0.00011 Score=72.59 Aligned_cols=62 Identities=31% Similarity=0.363 Sum_probs=43.5
Q ss_pred EEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccccccc
Q 013202 233 SVSMSFHRTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYRIA 307 (447)
Q Consensus 233 ~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyRi~ 307 (447)
.+...+.+..+||.++||.+-.+. ..+|.+++...+.+++= .+ + +...-.||+-||+|.|=.
T Consensus 196 I~Ev~v~G~Kl~l~tsHLEStr~h--~P~r~~qF~~~~~k~~E-aI---------e-~lPnA~ViFGGD~NlrD~ 257 (349)
T KOG2756|consen 196 IVEVNVSGNKLCLMTSHLESTRGH--APERMNQFKMVLKKMQE-AI---------E-SLPNATVIFGGDTNLRDR 257 (349)
T ss_pred EEEEeecCceEEEEeccccCCCCC--ChHHHHHHHHHHHHHHH-HH---------H-hCCCceEEEcCcccchhh
Confidence 345667888899999999998654 56788888877665420 00 0 113356999999999865
No 17
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=97.77 E-value=6.7e-05 Score=74.43 Aligned_cols=33 Identities=36% Similarity=0.605 Sum_probs=24.0
Q ss_pred EEEeeCCCCCCCCCCCCccccCCCCCCCEEEEeeEEE
Q 013202 14 VATWNVGGKTPHSGLNLDDFLQVDGQSDIYILGFQEI 50 (447)
Q Consensus 14 vgTWNV~g~~P~~~~dL~~wL~~~~~~DIyviGfQEi 50 (447)
+.||||||-.-.-.. +.+||....| || |++||+
T Consensus 3 I~SwNVNgiRar~~~-~~~~l~~~~p-DV--lclQEt 35 (261)
T COG0708 3 IASWNVNGLRARLKK-LLDWLEEEQP-DV--LCLQET 35 (261)
T ss_pred eEEEehhhHHHHHHH-HHHHHHHhCC-CE--EEEEec
Confidence 689999997543222 7789986544 86 688997
No 18
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=97.48 E-value=0.0037 Score=68.89 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=40.5
Q ss_pred eEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccccccccCHHHHHHHHhhC
Q 013202 241 TSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYRIALSYLDTRKLLEQN 320 (447)
Q Consensus 241 t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyRi~l~~~~v~~li~~~ 320 (447)
..||++|+||..+.... ..|..+...|++.+. .... . ..-.+|++||||- .+...+-+++..|
T Consensus 417 ~~l~VaNTHL~~~p~~~--dvRl~Q~~~Ll~~l~--~~~~------~----~~~PvIlcGDFNS---~P~S~vy~lLt~G 479 (606)
T PLN03144 417 QLLCVANTHIHANQELK--DVKLWQVHTLLKGLE--KIAA------S----ADIPMLVCGDFNS---VPGSAPHCLLATG 479 (606)
T ss_pred cEEEEEEeeeccCCccc--hhHHHHHHHHHHHHH--HHhh------c----CCCceEEeccCCC---CCCChhhhhhhcC
Confidence 46999999997765432 345666666665432 0000 0 0125899999995 4556677777776
Q ss_pred Ch
Q 013202 321 DW 322 (447)
Q Consensus 321 ~~ 322 (447)
..
T Consensus 480 ~v 481 (606)
T PLN03144 480 KV 481 (606)
T ss_pred Cc
Confidence 53
No 19
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=97.29 E-value=0.0055 Score=61.56 Aligned_cols=57 Identities=25% Similarity=0.280 Sum_probs=34.0
Q ss_pred EEEEEEEEcCe---EEEEEeecCCCCCCCccHHHHHHHHHH-HHHhCCCCCCCCCCCCCCCccccCccceEEEccccccc
Q 013202 231 CISVSMSFHRT---SFCFVCSHLASGEKEGDELRRNLDVIE-ILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYRI 306 (447)
Q Consensus 231 aV~ir~~i~~t---~~~FVn~HLaA~~~~~~~~rRn~d~~~-I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyRi 306 (447)
...++|+...+ .|.+||+|+.+.. ..++.....+ ++.... . ...+-||++||||=--
T Consensus 129 P~~~~F~~~~~~~~~F~li~~H~~p~~----~~~e~~aL~~v~~~~~~--------------~-~~~~~villGDFNa~~ 189 (276)
T smart00476 129 PFVVKFSSPSTAVKEFVIVPLHTTPEA----AVAEIDALYDVYLDVRQ--------------K-WGTEDVIFMGDFNAGC 189 (276)
T ss_pred ceEEEEEeCCCCCccEEEEEecCChHH----HHHHHHHHHHHHHHHHH--------------h-hccCCEEEEccCCCCC
Confidence 55677877664 7999999998853 2233333122 222110 0 0235699999999743
No 20
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=97.28 E-value=0.0023 Score=63.55 Aligned_cols=57 Identities=18% Similarity=0.338 Sum_probs=42.7
Q ss_pred cceeEEEEEEEEc-CeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccc
Q 013202 227 GNKGCISVSMSFH-RTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLN 303 (447)
Q Consensus 227 GNKGaV~ir~~i~-~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLN 303 (447)
--.|++-+.+... +..|-++|.||.=. .+.|.++...++..+.++. ...+++|||||
T Consensus 117 ~~Rgal~a~~~~~~g~~l~V~~~HL~l~-----~~~R~~Q~~~L~~~~~l~~---------------~~p~vl~GDFN 174 (259)
T COG3568 117 EPRGALLAEIELPGGKPLRVINAHLGLS-----EESRLRQAAALLALAGLPA---------------LNPTVLMGDFN 174 (259)
T ss_pred CCceeEEEEEEcCCCCEEEEEEEecccc-----HHHHHHHHHHHHhhccCcc---------------cCceEEEccCC
Confidence 3578999999984 77999999999944 3467778877877433321 12799999999
No 21
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=96.51 E-value=0.032 Score=55.90 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=34.5
Q ss_pred cceeEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccc
Q 013202 227 GNKGCISVSMSFHRTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLN 303 (447)
Q Consensus 227 GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLN 303 (447)
..+..+++++ .+ +.|.+.|+.+..+. .|.+....|..-.. +. ..+...+++||||
T Consensus 140 ~~Rpilgi~i--~~--~~ffstH~~a~~~~----da~aiV~~I~~~f~-~~-------------~~~~pw~I~GDFN 194 (271)
T PRK15251 140 ASRPIIGIRI--GN--DVFFSIHALANGGT----DAGAIVRAVHNFFR-PN-------------MRHINWMIAGDFN 194 (271)
T ss_pred cccceEEEEe--cC--eEEEEeeecCCCCc----cHHHHHHHHHHHHh-hc-------------cCCCCEEEeccCC
Confidence 4667788876 33 78999999998432 24555555544321 00 1135689999999
No 22
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=93.45 E-value=0.034 Score=46.94 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=17.8
Q ss_pred cccccceeeecCCeee-eeeccCCCCcCCCcCcc
Q 013202 378 PAWCDRILWHGTGIQQ-LSYIRGESRFSDHRPVC 410 (447)
Q Consensus 378 PSWcDRIL~~~~~i~~-l~Y~~~e~~~SDHkPV~ 410 (447)
.+-=|+||........ ..-.......|||+||.
T Consensus 86 ~s~iD~~~~s~~~~~~~~~~~~~~~~~SDH~~I~ 119 (119)
T PF14529_consen 86 GSRIDLILTSDNLLSWCVWVISSDDSGSDHCPIT 119 (119)
T ss_dssp EE--EEEEEECCGCCCEEEEEETTSSSSSB--EE
T ss_pred CceEEEEEECChHHhcCcEEEeCCCCCCCccCCC
Confidence 5667999987653322 11122456789999984
No 23
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=89.86 E-value=0.87 Score=47.40 Aligned_cols=195 Identities=21% Similarity=0.234 Sum_probs=95.8
Q ss_pred ceeeeEEEeccccccccce-----EEeeEeecccccccceeEEEEEEEEcCeEEEEEeecCCCCCCCc---cHHHHHHHH
Q 013202 195 GIFVTVWMRKELVQHVGHL-----RITSISRGIMGYLGNKGCISVSMSFHRTSFCFVCSHLASGEKEG---DELRRNLDV 266 (447)
Q Consensus 195 Gi~L~Vfvr~~~~~~I~~v-----~~~~v~tG~~G~~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~---~~~rRn~d~ 266 (447)
|-.|+||.|-.+..-.-+. ....+-.| --+|-||--..++.+.+..+.+-|+||-|--.+. ..-.|-.+.
T Consensus 79 GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rG--DWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D~YL~HR~~QA 156 (422)
T KOG3873|consen 79 GAGLCVFSKHPILETLFHRYSLNGYPHAIHRG--DWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQNDEYLCHRVAQA 156 (422)
T ss_pred cCceEEeecCchhhhhhhccccCCccceeeec--cccccceeEEEEEeeCCEEeeeeehhccccccccCchhhhHHHHHH
Confidence 5567777776543222111 01111122 1246788777889999999999999998853321 122343333
Q ss_pred HHHHHhCCCCCCCCCCCCCCCccccCccceEEEccccccc-ccCHHHHH--HHHhhCChhHhhccccchHHHHcccccCC
Q 013202 267 IEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYRI-ALSYLDTR--KLLEQNDWDALFDKDQLKIEKDAGRVFKG 343 (447)
Q Consensus 267 ~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyRi-~l~~~~v~--~li~~~~~~~Ll~~DQL~~~~~~g~~F~g 343 (447)
-++-+ |-+ .+....|.||..||||-+= +++..-.. .+. ..|..| .-||+-..-.+..-|++
T Consensus 157 wdlaq---fi~----------~t~q~~~vVI~~GDLN~~P~dl~~~ll~~a~l~--daw~~~-h~~q~e~~~~r~s~~~~ 220 (422)
T KOG3873|consen 157 WDLAQ---FIR----------ATRQNADVVILAGDLNMQPQDLGHKLLLSAGLV--DAWTSL-HLDQCESDSFRLSEDKE 220 (422)
T ss_pred HHHHH---HHH----------HHhcCCcEEEEecCCCCCccccceeeeeccchh--hhHhhh-chhhhcCcccccchhhh
Confidence 33322 111 1123579999999999765 34432111 111 112222 12333211111222344
Q ss_pred ccccccccCCccccccCCCCCCCcccccCCcccCcc----cccceeeecCC--eeeeeec----c---CCCCcCCCcCcc
Q 013202 344 WQEGKIYFAPTYKYSYNSDTYAGDCIKTKNKRRTPA----WCDRILWHGTG--IQQLSYI----R---GESRFSDHRPVC 410 (447)
Q Consensus 344 f~E~~I~F~PTYKy~~gt~~Yd~~~~~ts~k~R~PS----WcDRIL~~~~~--i~~l~Y~----~---~e~~~SDHkPV~ 410 (447)
..|+. | .+.--+.| ++..+|.|- =-|-||+++.. .+.-.|. + .+...|||-.+.
T Consensus 221 l~~g~-----t--cd~~~N~y------~~aqk~~ddp~~~RiDYvl~k~~~~~~~~a~~~~t~~rvP~~d~s~SDH~Al~ 287 (422)
T KOG3873|consen 221 LVEGN-----T--CDSPLNCY------TSAQKREDDPLGKRIDYVLVKPGDCNAKIAEVEFTEPRVPGEDCSYSDHEALM 287 (422)
T ss_pred hhcCC-----c--ccCcchhh------hHHHhCCCCccceeeeEEEEcCcceEEEeeeEEecCCCCCCCCCCccchhhhe
Confidence 44543 1 11111223 222222221 14778888653 2222222 2 245689999999
Q ss_pred ceEEEEEeec
Q 013202 411 AMFSVDVEVN 420 (447)
Q Consensus 411 a~F~v~v~~i 420 (447)
|.+.|.-...
T Consensus 288 a~L~I~~~~~ 297 (422)
T KOG3873|consen 288 ATLKIFKQPP 297 (422)
T ss_pred eEEEeecCCC
Confidence 9988765433
No 24
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=85.87 E-value=1.3 Score=47.62 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=57.2
Q ss_pred eeEEEecccccccc--ceEEeeEeecccccccceeEEEEEEEEcCe---EEEEEeecCCCCCCCccHHHHHHHHHHHHHh
Q 013202 198 VTVWMRKELVQHVG--HLRITSISRGIMGYLGNKGCISVSMSFHRT---SFCFVCSHLASGEKEGDELRRNLDVIEILKN 272 (447)
Q Consensus 198 L~Vfvr~~~~~~I~--~v~~~~v~tG~~G~~GNKGaV~ir~~i~~t---~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~ 272 (447)
++++-+.++...+. .|...-.+.|++..-.=++.|+.+|++-+. -++..|.||--|....++ |-.+...|+..
T Consensus 204 ~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~v--rL~Q~~iiL~~ 281 (495)
T KOG2338|consen 204 VAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSDV--RLAQVYIILAE 281 (495)
T ss_pred EEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccch--hhHHHHHHHHH
Confidence 34444544333332 333344566666542225566777766665 899999999999776554 66677778765
Q ss_pred CC-CCCCCCCCCCCCCccccCccceEEEccccc
Q 013202 273 TQ-FPKICRTPGSSVPEKILDHDRVIWLGDLNY 304 (447)
Q Consensus 273 ~~-F~~~~~~~~~~~~~~i~~~d~vfw~GDLNy 304 (447)
+. |... . ..|=.+|++||||-
T Consensus 282 ~~~~~~~---------~--~~~~pi~l~GDfNt 303 (495)
T KOG2338|consen 282 LEKMSKS---------S--KSHWPIFLCGDFNT 303 (495)
T ss_pred HHHHHhh---------c--ccCCCeEEecCCCC
Confidence 42 1100 0 03457999999984
No 25
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.43 E-value=4.8 Score=41.23 Aligned_cols=60 Identities=20% Similarity=0.245 Sum_probs=37.5
Q ss_pred cceeEEEEEEEE-cCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEccccc
Q 013202 227 GNKGCISVSMSF-HRTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNY 304 (447)
Q Consensus 227 GNKGaV~ir~~i-~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNy 304 (447)
+-||+.++.... +++.+..++.|.....-..+. .| ++..++.+.+. . -..-+++.||||=
T Consensus 173 ~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~~~-~~-~ql~~l~~~i~--~--------------~~gpvIlaGDfNa 233 (309)
T COG3021 173 LPKSALATAYPLPDGTELTVVALHAVNFPVGTDP-QR-AQLLELGDQIA--G--------------HSGPVILAGDFNA 233 (309)
T ss_pred CCccceeEEEEcCCCCEEEEEeeccccccCCccH-HH-HHHHHHHHHHH--c--------------CCCCeEEeecCCC
Confidence 578887777664 569999999999843322222 33 44555544321 0 0135999999996
No 26
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.35 E-value=11 Score=39.97 Aligned_cols=17 Identities=47% Similarity=0.749 Sum_probs=14.6
Q ss_pred ccCccceEEEccccccc
Q 013202 290 ILDHDRVIWLGDLNYRI 306 (447)
Q Consensus 290 i~~~d~vfw~GDLNyRi 306 (447)
+..++.||+=||||||=
T Consensus 349 L~~S~LvIFKGDLNYRK 365 (434)
T KOG3870|consen 349 LQKSSLVIFKGDLNYRK 365 (434)
T ss_pred HhhCcEEEEeccccHHH
Confidence 45688999999999984
No 27
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.91 E-value=2.1e+02 Score=29.61 Aligned_cols=33 Identities=33% Similarity=0.517 Sum_probs=21.7
Q ss_pred ccceeeecCCeeeeeeccCCCCcCCCcCccceEEE
Q 013202 381 CDRILWHGTGIQQLSYIRGESRFSDHRPVCAMFSV 415 (447)
Q Consensus 381 cDRIL~~~~~i~~l~Y~~~e~~~SDHkPV~a~F~v 415 (447)
-|-|++++..+ ..=.+....-|||+||.+.|+.
T Consensus 275 IDhvf~rgl~~--~ka~rl~~~gSDH~PLLveF~~ 307 (309)
T COG3021 275 IDHVFYRGLTV--MKARRLPDRGSDHRPLLVEFSY 307 (309)
T ss_pred cceeeecCcch--hhhhhccccCCCCCceEEEEEe
Confidence 57777777322 1112234588999999999975
No 28
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=22.77 E-value=21 Score=30.69 Aligned_cols=34 Identities=18% Similarity=0.499 Sum_probs=21.0
Q ss_pred EEeeCCCCCCCCCCCCccccCCCCCCCEEEEeeE
Q 013202 15 ATWNVGGKTPHSGLNLDDFLQVDGQSDIYILGFQ 48 (447)
Q Consensus 15 gTWNV~g~~P~~~~dL~~wL~~~~~~DIyviGfQ 48 (447)
--|++.....-...+|+.++...++||+++||--
T Consensus 29 ~~w~~~~~~~l~~~~l~~l~~~~p~pe~liiGtG 62 (110)
T PF04430_consen 29 RDWKVKSPHDLTPEDLEELLELEPKPEVLIIGTG 62 (110)
T ss_dssp EEEHHSSTTCEETHHHHHHHCTCCS-SEEEEEET
T ss_pred cCcCCCCcccCCHHHHHHHHhccCCCcEEEEccC
Confidence 4576544433222246667777789999999973
No 29
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=21.30 E-value=33 Score=29.54 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=20.0
Q ss_pred EEEeeCCCCCCCCCCCCccccCCCCCCCEEEEee
Q 013202 14 VATWNVGGKTPHSGLNLDDFLQVDGQSDIYILGF 47 (447)
Q Consensus 14 vgTWNV~g~~P~~~~dL~~wL~~~~~~DIyviGf 47 (447)
+..|++..-.+-.-.+|...+..+ +|||++||-
T Consensus 28 ~~~w~~~~~~~l~~~~l~~~~~~~-~peiliiGT 60 (109)
T cd00248 28 VVPWDGTSLSDLDPEALLPLLAED-RPDILLIGT 60 (109)
T ss_pred eeecCCcCcccCCHHHHHHHHhhC-CCCEEEEcC
Confidence 468998753221112345555555 799999995
No 30
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=20.51 E-value=55 Score=29.69 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=17.1
Q ss_pred cCCcccc-ccCC--CCCCCcccccCCcccCcccc
Q 013202 351 FAPTYKY-SYNS--DTYAGDCIKTKNKRRTPAWC 381 (447)
Q Consensus 351 F~PTYKy-~~gt--~~Yd~~~~~ts~k~R~PSWc 381 (447)
=||-||| +++. ..|. ..-|.|.|-
T Consensus 93 ~paKYky~dp~G~~~TWT-------GrGR~P~wi 119 (135)
T PRK10947 93 RPAKYSYVDENGETKTWT-------GQGRTPAVI 119 (135)
T ss_pred CCCCCcccCCCCCcCccc-------CCCCCCHHH
Confidence 3789999 6543 4564 468999995
Done!