Query 013203
Match_columns 447
No_of_seqs 150 out of 1352
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 01:27:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12852 groEL chaperonin GroE 100.0 5.1E-94 1.1E-98 764.5 46.8 437 5-447 53-518 (545)
2 PRK00013 groEL chaperonin GroE 100.0 7.9E-94 1.7E-98 760.8 47.5 441 5-447 52-517 (542)
3 PRK12849 groEL chaperonin GroE 100.0 1.1E-93 2.3E-98 759.8 46.3 440 5-447 52-516 (542)
4 PRK14104 chaperonin GroEL; Pro 100.0 8.8E-94 1.9E-98 761.0 45.4 437 5-447 53-518 (546)
5 cd03344 GroEL GroEL_like type 100.0 3.1E-93 6.7E-98 754.1 47.7 440 5-447 50-514 (520)
6 TIGR02348 GroEL chaperonin Gro 100.0 4.2E-93 9.1E-98 754.2 47.0 440 5-447 51-515 (524)
7 PTZ00114 Heat shock protein 60 100.0 3.2E-93 6.9E-98 759.3 46.1 441 5-447 64-533 (555)
8 PRK12850 groEL chaperonin GroE 100.0 2.1E-92 4.5E-97 750.8 46.3 440 5-447 53-517 (544)
9 CHL00093 groEL chaperonin GroE 100.0 1.6E-92 3.4E-97 750.7 44.8 439 5-447 52-518 (529)
10 PRK12851 groEL chaperonin GroE 100.0 5.4E-92 1.2E-96 747.2 46.4 440 5-447 53-517 (541)
11 PLN03167 Chaperonin-60 beta su 100.0 1.3E-91 2.8E-96 748.9 45.6 440 5-447 108-574 (600)
12 KOG0356 Mitochondrial chaperon 100.0 1.9E-82 4.2E-87 641.0 30.7 435 7-446 68-529 (550)
13 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.2E-74 2.5E-79 609.1 33.2 376 5-447 54-476 (484)
14 TIGR02347 chap_CCT_zeta T-comp 100.0 8.5E-74 1.8E-78 607.6 38.3 382 5-447 58-519 (531)
15 cd03343 cpn60 cpn60 chaperonin 100.0 1.4E-73 3E-78 606.7 37.9 382 5-447 57-510 (517)
16 TIGR02339 thermosome_arch ther 100.0 2.6E-73 5.7E-78 604.4 37.5 382 5-447 58-513 (519)
17 cd03335 TCP1_alpha TCP-1 (CTT 100.0 7.6E-73 1.6E-77 601.6 38.0 387 5-447 50-519 (527)
18 COG0459 GroL Chaperonin GroEL 100.0 1E-74 2.2E-79 608.3 20.9 413 6-447 54-507 (524)
19 cd03338 TCP1_delta TCP-1 (CTT 100.0 1.4E-72 3E-77 598.6 34.6 389 5-447 50-509 (515)
20 TIGR02340 chap_CCT_alpha T-com 100.0 3.8E-72 8.2E-77 597.1 37.8 387 5-447 54-523 (536)
21 TIGR02342 chap_CCT_delta T-com 100.0 2.1E-72 4.5E-77 596.7 35.6 388 5-447 51-510 (517)
22 cd03339 TCP1_epsilon TCP-1 (CT 100.0 3.6E-72 7.8E-77 596.3 36.5 382 5-447 65-521 (526)
23 cd03340 TCP1_eta TCP-1 (CTT or 100.0 9E-72 2E-76 593.0 38.6 385 5-447 58-513 (522)
24 TIGR02343 chap_CCT_epsi T-comp 100.0 5.7E-72 1.2E-76 594.6 36.4 382 5-447 69-525 (532)
25 TIGR02345 chap_CCT_eta T-compl 100.0 1.8E-71 3.9E-76 590.2 36.6 385 5-447 59-513 (522)
26 TIGR02344 chap_CCT_gamma T-com 100.0 2.7E-71 5.9E-76 589.7 37.0 382 5-447 58-515 (525)
27 TIGR02346 chap_CCT_theta T-com 100.0 1.1E-71 2.4E-76 592.2 31.8 381 5-447 60-513 (531)
28 cd03336 TCP1_beta TCP-1 (CTT o 100.0 1E-70 2.2E-75 583.7 38.0 381 5-447 57-507 (517)
29 PTZ00212 T-complex protein 1 s 100.0 1.6E-70 3.5E-75 583.9 33.1 381 5-447 69-519 (533)
30 cd03337 TCP1_gamma TCP-1 (CTT 100.0 3E-70 6.5E-75 575.4 33.3 365 5-447 58-474 (480)
31 TIGR02341 chap_CCT_beta T-comp 100.0 1.4E-69 3.1E-74 574.7 34.8 381 5-447 58-508 (519)
32 cd00309 chaperonin_type_I_II c 100.0 2E-68 4.4E-73 560.4 37.0 365 5-447 50-459 (464)
33 cd03341 TCP1_theta TCP-1 (CTT 100.0 1.9E-68 4E-73 560.7 34.5 367 5-447 50-465 (472)
34 KOG0361 Chaperonin complex com 100.0 1.5E-69 3.3E-74 524.6 22.9 384 6-447 63-516 (543)
35 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 2.4E-63 5.2E-68 524.3 35.3 382 5-447 31-477 (485)
36 KOG0358 Chaperonin complex com 100.0 5.2E-64 1.1E-68 485.4 22.5 394 6-447 69-527 (534)
37 KOG0363 Chaperonin complex com 100.0 3.7E-62 8.1E-67 470.5 27.8 380 6-447 63-512 (527)
38 KOG0364 Chaperonin complex com 100.0 8.3E-60 1.8E-64 463.3 20.9 381 6-447 62-514 (527)
39 KOG0360 Chaperonin complex com 100.0 4.7E-58 1E-62 454.7 23.7 386 5-447 61-529 (545)
40 KOG0362 Chaperonin complex com 100.0 1E-55 2.3E-60 440.7 29.7 388 5-447 68-514 (537)
41 KOG0359 Chaperonin complex com 100.0 6.7E-53 1.4E-57 414.1 19.6 380 5-446 59-507 (520)
42 KOG0357 Chaperonin complex com 100.0 5.1E-51 1.1E-55 390.2 15.7 287 15-447 71-389 (400)
43 cd03333 chaperonin_like chaper 100.0 4.3E-29 9.3E-34 235.7 20.8 192 95-358 2-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 100.0 6.8E-27 1.5E-31 227.7 21.8 198 108-359 20-254 (261)
45 KOG0230 Phosphatidylinositol-4 98.9 1.5E-08 3.3E-13 114.2 14.0 204 110-368 336-577 (1598)
46 COG0459 GroL Chaperonin GroEL 97.7 7.5E-05 1.6E-09 79.8 6.6 90 186-291 259-355 (524)
47 PTZ00212 T-complex protein 1 s 58.3 23 0.00049 38.4 6.4 44 116-159 178-222 (533)
48 TIGR02341 chap_CCT_beta T-comp 46.3 43 0.00093 36.1 6.2 43 116-159 167-211 (519)
49 PRK13600 putative ribosomal pr 41.1 1.1E+02 0.0024 24.5 6.3 54 189-252 21-74 (84)
50 smart00574 POX domain associat 37.7 51 0.0011 29.0 4.1 43 336-378 84-127 (140)
51 TIGR02345 chap_CCT_eta T-compl 37.3 14 0.0003 39.9 0.7 61 195-256 245-314 (522)
52 PRK06683 hypothetical protein; 32.4 1.2E+02 0.0025 24.2 5.1 53 190-252 20-72 (82)
53 PF01985 CRS1_YhbY: CRS1 / Yhb 31.3 1.6E+02 0.0035 23.3 5.9 67 188-256 7-75 (84)
54 PF07526 POX: Associated with 29.4 66 0.0014 28.4 3.6 42 337-378 85-127 (140)
55 PRK10343 RNA-binding protein Y 28.6 2.7E+02 0.0058 23.0 6.8 68 187-256 8-77 (97)
56 PF00205 TPP_enzyme_M: Thiamin 28.4 83 0.0018 26.9 4.1 61 188-274 3-64 (137)
57 PRK13601 putative L7Ae-like ri 27.6 1.6E+02 0.0035 23.4 5.2 53 190-252 17-69 (82)
58 PRK11058 GTPase HflX; Provisio 27.3 1.9E+02 0.0042 30.3 7.2 113 238-358 26-180 (426)
59 PRK13602 putative ribosomal pr 25.4 1.8E+02 0.0039 23.0 5.1 53 190-252 20-72 (82)
60 PRK02955 small acid-soluble sp 24.9 96 0.0021 23.8 3.2 32 330-368 13-44 (68)
61 COG3962 Acetolactate synthase 24.5 38 0.00082 35.9 1.3 39 342-380 216-254 (617)
62 PF04312 DUF460: Protein of un 22.8 1.1E+02 0.0024 27.0 3.6 42 187-257 66-107 (138)
63 PF07131 DUF1382: Protein of u 21.9 2.5E+02 0.0055 21.0 4.8 52 64-118 4-55 (61)
64 TIGR01166 cbiO cobalt transpor 21.3 99 0.0022 28.0 3.4 42 167-208 142-188 (190)
65 PF03102 NeuB: NeuB family; I 20.8 2.5E+02 0.0055 27.1 6.1 65 183-256 55-119 (241)
66 KOG2663 Acetolactate synthase, 20.3 98 0.0021 30.1 3.1 27 326-353 121-147 (309)
67 TIGR00253 RNA_bind_YhbY putati 20.0 4.9E+02 0.011 21.3 7.0 67 188-256 7-75 (95)
No 1
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.1e-94 Score=764.47 Aligned_cols=437 Identities=37% Similarity=0.564 Sum_probs=417.1
Q ss_pred HHHHhhhcccc----CccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLI----NTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (447)
Q Consensus 5 ~~~il~~~~~~----~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~ 79 (447)
..||||+|++. ||.||++ +++|++||+|+||||||+++||++||+++.++++ |+||+.|++||++|.+.
T Consensus 53 G~TIlk~i~~~~~~~~p~akll------~e~a~~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~ 126 (545)
T PRK12852 53 GVTVAKEIELEDKFENMGAQMV------REVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAA 126 (545)
T ss_pred HHHHHHHccCCCcccChHHHHH------HHHHhhcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 46999999995 7777766 8999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccccceeecCCcccceeEEEeeEEEeecccCccccc
Q 013203 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (447)
Q Consensus 80 ~~~~L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~p~~~~ 159 (447)
++++|+++++|+++.+++.++|++|+++++.+++++++|+.+++++|.|+++.|++..+++++++|++|++||.+|||++
T Consensus 127 ~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~ 206 (545)
T PRK12852 127 VVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVT 206 (545)
T ss_pred HHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCcccc
Confidence 99999999999988778999999999889999999999999999989999999988767899999999999999999999
Q ss_pred ccccceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchh
Q 013203 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (447)
Q Consensus 160 ~~~~~~~~l~~p~Il~~d~~i~~~~~~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~ 239 (447)
++++++.+++||+|+++|.+|+++++++|+|+++.++|+||||++++|+++|+++|+.|+++|.++|++||+|+||++|+
T Consensus 207 ~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~ 286 (545)
T PRK12852 207 NAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRK 286 (545)
T ss_pred ccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEeCCCChhhHHHHHHHHHHHhhhccc----HHHH
Q 013203 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (447)
Q Consensus 240 ~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~----~~l~ 315 (447)
++|+|||++|||++++++.|.+++++++++||+|+.|+++++++++++++++++.++.|+++|+++++++.+ ++|+
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 366 (545)
T PRK12852 287 AMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQ 366 (545)
T ss_pred hHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999999999988788899999999999999999999999999999999999999999999999876 9999
Q ss_pred HHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 013203 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (447)
Q Consensus 316 eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~A 395 (447)
|||+||+|++|||+|||+|+.+++|+||+++||+|++|+++++|||||||++|+++|+.|++++..++++|+|+++|++|
T Consensus 367 ~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~A 446 (545)
T PRK12852 367 ERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINNDNADVQAGINIVLKA 446 (545)
T ss_pred HHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887688999999999999
Q ss_pred H--------------------HhhhcCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 396 L--------------------KLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 396 L--------------------kl~~~~~~~~G~d~~~~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
| ++++..++++|||+.+|+++||++.|||||+.||+++|++|+++|++||+|
T Consensus 447 L~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~i 518 (545)
T PRK12852 447 LEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTT 518 (545)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhH
Confidence 9 333334567999999999999999999999999999999999999999986
No 2
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.9e-94 Score=760.78 Aligned_cols=441 Identities=38% Similarity=0.545 Sum_probs=417.2
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..+|||+|+++||++++. +.+++++|++||+|+||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 52 G~tIlk~i~~~hp~~~~~--akll~e~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~ 129 (542)
T PRK00013 52 GVTVAKEIELEDPFENMG--AQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEE 129 (542)
T ss_pred HHHHHHHccCCCchhhHH--HHHHHHHHHhcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999965533 55669999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccccceeecCCcccceeEEEeeEEEeecccCccccccccc
Q 013203 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (447)
Q Consensus 84 L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~p~~~~~~~~ 163 (447)
|+++++|+++.++|.++|++|+++++.+++++++|+..++++|.|+|+.+++..+++++++|++|++||.+|||.++++.
T Consensus 130 L~~~a~~~~~~~~l~~va~ts~~~~~~ls~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~ 209 (542)
T PRK00013 130 LKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEK 209 (542)
T ss_pred HHHhccCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccC
Confidence 99999999888899999999998899999999999999998888899877666678999999999999999999999988
Q ss_pred ceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHH
Q 013203 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (447)
Q Consensus 164 ~~~~l~~p~Il~~d~~i~~~~~~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (447)
++..++||+|+++|++|++++++.++++++.++|+||||++++|+++|+++|+.|+++|+++|++||+|+||++|+++|+
T Consensus 210 ~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~ 289 (542)
T PRK00013 210 MEAELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLE 289 (542)
T ss_pred CeEEEecCEEEEEcCccCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEeCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHh
Q 013203 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (447)
Q Consensus 244 ~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~----~~l~eR~a 319 (447)
|||++|||++++++.|.+++++++++||+|+.|++++++|+++++|++++++..|+++|+++++++.+ ++|+|||+
T Consensus 290 ~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~ 369 (542)
T PRK00013 290 DIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLA 369 (542)
T ss_pred HHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 99999999999988888899999999999999999999999999999999999999999999999877 99999999
Q ss_pred hhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH---
Q 013203 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNAL--- 396 (447)
Q Consensus 320 ~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~AL--- 396 (447)
||+|+++||+|||+|+.+++|+||+++||+|++|+++++|+|||||++|+++|+.|+++...++++|+|+++|++||
T Consensus 370 ~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~i 449 (542)
T PRK00013 370 KLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVALLRAAPALEALKGLNGDEATGINIVLRALEAP 449 (542)
T ss_pred HhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998445899999999999999
Q ss_pred -----------------HhhhcCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 397 -----------------KLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 397 -----------------kl~~~~~~~~G~d~~~~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
++++..++++|||+.+|++.||++.|||||+.||+++|++|+++|++||+|
T Consensus 450 p~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 517 (542)
T PRK00013 450 LRQIAENAGLEGSVVVEKVKNGKGKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTT 517 (542)
T ss_pred HHHHHHHcCCCHHHHHHHHHhhcCCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHH
Confidence 333222457999999999999999999999999999999999999999986
No 3
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.1e-93 Score=759.77 Aligned_cols=440 Identities=40% Similarity=0.563 Sum_probs=416.7
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|+++||...+. +.+++++|++||+|+||||||+++||++||+++.++++ |+||+.|++||++|++.++++
T Consensus 52 GaTIlk~i~~~hp~~~~~--a~ll~~~a~~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~ 129 (542)
T PRK12849 52 GVSIAKEIELEDPFENLG--AQLVKEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEE 129 (542)
T ss_pred HHHHHHHcccCCccHhHH--HHHHHHHHHhcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 469999999999933311 33448999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccccceeecCCcccceeEEEeeEEEeecccCccccccccc
Q 013203 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (447)
Q Consensus 84 L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~p~~~~~~~~ 163 (447)
|+++++|+++.++|.++|+||+++++.+++++++|+..++++|.|.++.|++++|++++++|++|++||.+|||.++++.
T Consensus 130 L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~ 209 (542)
T PRK12849 130 LKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPER 209 (542)
T ss_pred HHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccC
Confidence 99999999888889999999999899999999999999998888899999999888999999999999999999998888
Q ss_pred ceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHH
Q 013203 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (447)
Q Consensus 164 ~~~~l~~p~Il~~d~~i~~~~~~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (447)
++..++||+|+++|++|++++++.++++++.++|+||||++++|+++|+++|+.|+++|.++|++||+|+|+++|+++|+
T Consensus 210 ~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~ 289 (542)
T PRK12849 210 MEAVLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLE 289 (542)
T ss_pred ceEEeeCcEEEeecCCcCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEeCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHh
Q 013203 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (447)
Q Consensus 244 ~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~----~~l~eR~a 319 (447)
|||.+|||+++++..+.+++++++++||+|++|++++++|+++++|++++++..|+++|+++++++++ ++|+||++
T Consensus 290 ~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~ 369 (542)
T PRK12849 290 DIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLA 369 (542)
T ss_pred HHHHHhCCEEecccccCCcccCCHHHCceeeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999999988888899999999999999999999999999999999999999999999999877 99999999
Q ss_pred hhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH---
Q 013203 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNAL--- 396 (447)
Q Consensus 320 ~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~AL--- 396 (447)
||+|++|||+|||+|+.+++|+||+++||+|++|+++++|||||||++|+++|+.|++++..++++|+|+++|++||
T Consensus 370 ~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~~~~g~~~~~i~~~a~Al~~i 449 (542)
T PRK12849 370 KLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVALLRAAKALDELAGLNGDQAAGVEIVRRALEAP 449 (542)
T ss_pred HhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcCeecCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999855899999999999999
Q ss_pred -----------------HhhhcCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 397 -----------------KLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 397 -----------------kl~~~~~~~~G~d~~~~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
++++. .+++|||+.+|+++||++.|||||+.||.++|++|+++|++||+|
T Consensus 450 p~~La~NaG~d~~~vi~~L~~~-~~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~i 516 (542)
T PRK12849 450 LRQIAENAGLDGSVVVAKVLEL-EDGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTT 516 (542)
T ss_pred HHHHHHHCCCCHHHHHHHHHhh-CCCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhH
Confidence 33222 357999999999999999999999999999999999999999986
No 4
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=8.8e-94 Score=761.04 Aligned_cols=437 Identities=38% Similarity=0.573 Sum_probs=418.6
Q ss_pred HHHHhhhcccc----CccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLI----NTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (447)
Q Consensus 5 ~~~il~~~~~~----~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~ 79 (447)
..+|||+|++. ||.|+++ +++|++||+++||||||+||||++||+++.++++ |+||+.|++||++|.+.
T Consensus 53 G~tIlk~i~~~d~~~~pgakll------~e~a~~qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~ 126 (546)
T PRK14104 53 GVTVAKEIELEDKFENMGAQMV------REVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEA 126 (546)
T ss_pred HHHHHHHhcCCCcccChHHHHH------HHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Confidence 46899999999 9998876 8999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccccceeecCCcccceeEEEeeEEEeecccCccccc
Q 013203 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (447)
Q Consensus 80 ~~~~L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~p~~~~ 159 (447)
++++|+++++|+++.+++.++|++|+++++.+++++++|+.+++++|.|.++.++++++++++++|++|++||.||||++
T Consensus 127 ~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~ 206 (546)
T PRK14104 127 VVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVT 206 (546)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhc
Confidence 99999999999987778999999999999999999999999999999999998888777899999999999999999999
Q ss_pred ccccceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchh
Q 013203 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (447)
Q Consensus 160 ~~~~~~~~l~~p~Il~~d~~i~~~~~~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~ 239 (447)
+++.+..++++|+|+++|.+++++++++|+|+++.++|+||||++++|+++|+++|..|++++.++|+|||+|+||++|+
T Consensus 207 ~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~ 286 (546)
T PRK14104 207 NADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRK 286 (546)
T ss_pred CcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred hhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEeCCCChhhHHHHHHHHHHHhhhccc----HHHH
Q 013203 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (447)
Q Consensus 240 ~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~----~~l~ 315 (447)
++|+|||++|||++++++.+++++++++++||+|++|+++++++++++||++++.++.|+++|+++++++++ ++|+
T Consensus 287 ~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 366 (546)
T PRK14104 287 AMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQ 366 (546)
T ss_pred HHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999998888899999999999999999999999999999999999999999999999877 9999
Q ss_pred HHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 013203 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (447)
Q Consensus 316 eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~A 395 (447)
|||+||+|++|||+|||+|+.+++|+||+++||+|++|+++++|||||||++|+++|..|+++...++++++|+++|++|
T Consensus 367 eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~A 446 (546)
T PRK14104 367 ERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGIKTKNDDQKTGVEIVRKA 446 (546)
T ss_pred HHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcCcCchHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998865688999999999999
Q ss_pred H--------------------HhhhcCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 396 L--------------------KLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 396 L--------------------kl~~~~~~~~G~d~~~~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
| ++++..++++|||+.+|+++||++.|||||+.||+++|++|+++|++||+|
T Consensus 447 l~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~i 518 (546)
T PRK14104 447 LSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITT 518 (546)
T ss_pred HHhhHHHHHHhCCCCHHHHHHHHHhcCCCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 9 333334557999999999999999999999999999999999999999985
No 5
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=3.1e-93 Score=754.09 Aligned_cols=440 Identities=41% Similarity=0.594 Sum_probs=418.3
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..+|||+|+++||.+++. +.+++++|++||+|+||||||+++||++||+++.++++ |+||..|++||+.|.+.++++
T Consensus 50 G~tIlk~i~~~hp~~~~~--a~ll~~~a~~qd~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~ 127 (520)
T cd03344 50 GVTVAKEIELEDPFENMG--AQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEE 127 (520)
T ss_pred HHHHHHHcccCCcchhHH--HHHHHHHHhhhccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Confidence 468999999999955533 45569999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccccceeecCCcccceeEEEeeEEEeecccCccccccccc
Q 013203 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (447)
Q Consensus 84 L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~p~~~~~~~~ 163 (447)
|+++++|+++.+++.++|+||+++++.+++++++|+..++++|.|.+++|+++.|++++++|++|++||.+|||.++|++
T Consensus 128 L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~ 207 (520)
T cd03344 128 LKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEK 207 (520)
T ss_pred HHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCccc
Confidence 99999999888899999999999999999999999999998888999999999887999999999999999999999988
Q ss_pred ceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHH
Q 013203 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (447)
Q Consensus 164 ~~~~l~~p~Il~~d~~i~~~~~~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (447)
++.+++||+|+++|++++++++++++++++.++|+||||++++|+++|+++|..|+++|.+++++||+|++|++++++|+
T Consensus 208 ~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~ 287 (520)
T cd03344 208 MEVELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLE 287 (520)
T ss_pred CeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEeCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHh
Q 013203 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (447)
Q Consensus 244 ~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~----~~l~eR~a 319 (447)
|||++|||++++++.+.+++++++++||+|++|++++++++++++|+++++++.|+++|+++++++++ ++|+||++
T Consensus 288 ~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~ 367 (520)
T cd03344 288 DIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLA 367 (520)
T ss_pred HHHHHhCCEEecccccCCcccCCHHHCCcceEEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999988777899999999999999999999999999999999999999999999999877 99999999
Q ss_pred hhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH---
Q 013203 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNAL--- 396 (447)
Q Consensus 320 ~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~AL--- 396 (447)
||+|++|||+|||+|+.+++|+||+++||+|++|+++++|+|||||++|+++|+.|++++..++++|+|+++|++||
T Consensus 368 ~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~Al~~i 447 (520)
T cd03344 368 KLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRASPALDKLKALNGDEKLGIEIVRRALEAP 447 (520)
T ss_pred HhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998878899999999999999
Q ss_pred -----------------HhhhcCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 397 -----------------KLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 397 -----------------kl~~~~~~~~G~d~~~~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
++++.. .++|||+.+|+++||++.|||||+.||++++++|+++|++||+|
T Consensus 448 p~~La~NaG~d~~~vi~~l~~~~-~~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~i 514 (520)
T cd03344 448 LRQIAENAGVDGSVVVEKVLESP-DGFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTT 514 (520)
T ss_pred HHHHHHhcCCCHHHHHHHHHhhc-CCEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhh
Confidence 232222 27999999999999999999999999999999999999999986
No 6
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=4.2e-93 Score=754.23 Aligned_cols=440 Identities=38% Similarity=0.554 Sum_probs=416.5
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|+++||++++. +.+++++|++||+|+||||||+++||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 51 G~tIlk~i~~~hp~~~~~--akll~~~a~~qd~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~ 128 (524)
T TIGR02348 51 GVTVAKEIELEDKFENMG--AQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEE 128 (524)
T ss_pred HHHHHHHccCCChhhHHH--HHHHHHHHHccCceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999955533 55669999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccccceeecCCcccceeEEEeeEEEeecccCccccccccc
Q 013203 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (447)
Q Consensus 84 L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~p~~~~~~~~ 163 (447)
|+++++|+++.+++.++|++|+++++++++++++|+.++++++.|.|+.|++..+++++++|++|++||.+|||.+++++
T Consensus 129 L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~ 208 (524)
T TIGR02348 129 LKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEK 208 (524)
T ss_pred HHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccC
Confidence 99999999888899999999999899999999999999999888999999888788999999999999999999999999
Q ss_pred ceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHH
Q 013203 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (447)
Q Consensus 164 ~~~~l~~p~Il~~d~~i~~~~~~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (447)
++..++||+|+++|++++++++++++++++.++|+||||++++|+++|+++|+.|+++|+++|++||+|+||++|+++|+
T Consensus 209 ~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~ 288 (524)
T TIGR02348 209 MEVELENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLE 288 (524)
T ss_pred CeEEeeCceeeeccCCcCCHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEeCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHh
Q 013203 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (447)
Q Consensus 244 ~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~----~~l~eR~a 319 (447)
|||++|||++++++.|++++++++++||+|+.|++.++++++++++++++++..|+++|+++++++.+ ++|+|||+
T Consensus 289 ~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~ 368 (524)
T TIGR02348 289 DIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLA 368 (524)
T ss_pred HHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999988787899999999999999999999999999999999999999999999998876 99999999
Q ss_pred hhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH---
Q 013203 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNAL--- 396 (447)
Q Consensus 320 ~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~AL--- 396 (447)
||+|+++||+|||+|+.+++|+||+++||+|++|+++++|||||||++|+++|+.|++....++++|+|+++|++||
T Consensus 369 ~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~i 448 (524)
T TIGR02348 369 KLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEGIVPGGGVALLRAAAALEGLKGDNEDEAIGIDIVKRALEAP 448 (524)
T ss_pred HhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999984335889999999999999
Q ss_pred -----------------HhhhcCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 397 -----------------KLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 397 -----------------kl~~~~~~~~G~d~~~~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
++++. +.++|||+.+|++.||++.|||||+.||+++|++|+++|++||+|
T Consensus 449 p~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 515 (524)
T TIGR02348 449 LRQIAENAGKDGAVVAEKVKES-KGNFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTT 515 (524)
T ss_pred HHHHHHhCCCCHHHHHHHHHhc-CCCeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhH
Confidence 33323 235999999999999999999999999999999999999999986
No 7
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=3.2e-93 Score=759.29 Aligned_cols=441 Identities=41% Similarity=0.592 Sum_probs=416.3
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|+++||...+. +.+++++|++||+++||||||+|+||++||+++.++++ |+||..|++||++|.+.++++
T Consensus 64 G~TIlk~i~~~~p~~~~~--a~ll~~~a~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~ 141 (555)
T PTZ00114 64 GVTVAKAIEFSDRFENVG--AQLIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLES 141 (555)
T ss_pred hHHHHHhcCcCCcchhHH--HHHHHHHHHhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 468999999999933321 33448999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccccceeecCCcccceeEEEeeEEEeecccCccccccccc
Q 013203 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (447)
Q Consensus 84 L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~p~~~~~~~~ 163 (447)
|+++++|+++.++|.++|+||+++++.+++++++|+.+++++|.|.+++|++++|++++++|++|++||.+|||+++++.
T Consensus 142 L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~ 221 (555)
T PTZ00114 142 LKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKT 221 (555)
T ss_pred HHHhccCCCCHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEecccccccccccccc
Confidence 99999999888889999999999899999999999999998888999999999887799999999999999999999999
Q ss_pred ceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHH
Q 013203 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (447)
Q Consensus 164 ~~~~l~~p~Il~~d~~i~~~~~~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (447)
++.+++||+|+++|++|+++++++++++++.++|+||+|++++|+++|+++|..|+++|.++|++||+|++|++++++|+
T Consensus 222 ~~~~l~~~~Ili~d~~L~~~~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~ 301 (555)
T PTZ00114 222 QKVELENPLILVTDKKISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQ 301 (555)
T ss_pred CeEEecCCEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEeeCC-CCCCcCCCCCCCceeeeEEEEecceEEEEeCCCChhhHHHHHHHHHHHhhhccc----HHHHHHH
Q 013203 244 DLAILTGGQVLTGG-SGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRL 318 (447)
Q Consensus 244 ~la~~tGa~i~~~~-~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~----~~l~eR~ 318 (447)
|||++|||+++++. .+..++++++++||+|++|+++++++++++++++++.|+.|+++|+.+++.+++ ++|+|||
T Consensus 302 ~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~ 381 (555)
T PTZ00114 302 DIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERL 381 (555)
T ss_pred HHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999997 777789999999999999999999999999999999999999999999988775 9999999
Q ss_pred hhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHHhcC---CCchhHHHHHHHHHH
Q 013203 319 AKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT---TNSDQKIGVQIVQNA 395 (447)
Q Consensus 319 a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~---~~~~~~~~i~~~a~A 395 (447)
+||+|++|||+|||+|+.+++|++|+++||+|++|+++++|+|||||++|+++|..|++++. .++++|+|+++|++|
T Consensus 382 ~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~A 461 (555)
T PTZ00114 382 AKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNA 461 (555)
T ss_pred HhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998874 478999999999999
Q ss_pred H--------------------HhhhcCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 396 L--------------------KLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 396 L--------------------kl~~~~~~~~G~d~~~~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
| ++++++++++|||+.+|++.||++.|||||+.||+++|++|+++|++||+|
T Consensus 462 L~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~i 533 (555)
T PTZ00114 462 LRLPTKQIAENAGVEGAVVVEKILEKKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTT 533 (555)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhH
Confidence 9 333336678999999999999999999999999999999999999999985
No 8
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.1e-92 Score=750.84 Aligned_cols=440 Identities=37% Similarity=0.545 Sum_probs=417.3
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|+++||++++. +.+++++|++||+++||||||+++||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 53 G~tIlk~i~i~hp~~~~g--a~ll~~~a~~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~ 130 (544)
T PRK12850 53 GVTVAKEIELEDKFENMG--AQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDE 130 (544)
T ss_pred HHHHHHHhcCCChhhhHH--HHHHHHHHhhhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHH
Confidence 469999999999997655 66779999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccccceeecCCcccceeEEEeeEEEeecccCccccccccc
Q 013203 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (447)
Q Consensus 84 L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~p~~~~~~~~ 163 (447)
|+++++|+++.++|.++|++|+++++.+++++++|+.+++++|.|.++.+...++++++++|++|++||.+|||++++++
T Consensus 131 L~~~s~~v~~~~~l~~va~~s~~~~~~l~~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~ 210 (544)
T PRK12850 131 LKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEK 210 (544)
T ss_pred HHHhccCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCcccccccc
Confidence 99999999888889999999999899999999999999998888888877666678999999999999999999998888
Q ss_pred ceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHH
Q 013203 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (447)
Q Consensus 164 ~~~~l~~p~Il~~d~~i~~~~~~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (447)
++.+++||+|+++|+++++.++++++++++.++|+||||++++|+++++++|+.|+++|.+++++||+|+||++|+++|+
T Consensus 211 ~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le 290 (544)
T PRK12850 211 MRAELEDPYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLE 290 (544)
T ss_pred CeEEEeCCEEEEEecccCCHHHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEeCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHh
Q 013203 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (447)
Q Consensus 244 ~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~----~~l~eR~a 319 (447)
|||++|||+++++..+++++++++++||+|++|++.+++|+++++|++++.+..|+++++++++++.+ ++|+|||+
T Consensus 291 ~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~ 370 (544)
T PRK12850 291 DIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLA 370 (544)
T ss_pred HHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999987777899999999999999999999999999999999999999999999998776 99999999
Q ss_pred hhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH---
Q 013203 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNAL--- 396 (447)
Q Consensus 320 ~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~AL--- 396 (447)
||+|++|||+|||+|+.+++|+||+++||+|++|+++++|||||||++|+++|..|+++...++++|+|+++|++||
T Consensus 371 ~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~i 450 (544)
T PRK12850 371 KLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSALRGLKGANADETAGIDIVRRALEEP 450 (544)
T ss_pred HhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998545899999999999999
Q ss_pred -----------------HhhhcCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 397 -----------------KLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 397 -----------------kl~~~~~~~~G~d~~~~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
++++ ...++|||+.+|+++||++.|||||+.||+++|++|+++|++||+|
T Consensus 451 p~~La~NaG~d~~~v~~~l~~-~~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 517 (544)
T PRK12850 451 LRQIATNAGFEGSVVVGKVAE-LPGNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITT 517 (544)
T ss_pred HHHHHHhcCCCHHHHHHHHHh-hCCCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhH
Confidence 2222 2347899999999999999999999999999999999999999986
No 9
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=1.6e-92 Score=750.67 Aligned_cols=439 Identities=33% Similarity=0.511 Sum_probs=416.7
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|+++||+++++ +.+++++|.+|++|+||||||++|||++||++|+++++ |+||+.|++||++|.+.+++.
T Consensus 52 G~tIlk~i~~~hp~a~~g--~~li~~~a~~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~ 129 (529)
T CHL00093 52 GVTIAKEIELEDHIENTG--VALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQ 129 (529)
T ss_pred HHHHHHHccCcCHHHHHH--HHHHHHHHHhcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999988 88889999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccccceeecCCcccceeEEEeeEEEeecccCccccccccc
Q 013203 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (447)
Q Consensus 84 L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~p~~~~~~~~ 163 (447)
|+++++|+++.++|.+||++|+++++.+++++++|+.+++++|.|.++.|+...+++++++|++|++||.||||+++|++
T Consensus 130 L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~ 209 (529)
T CHL00093 130 IAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTER 209 (529)
T ss_pred HHHhCCCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCcc
Confidence 99999999888899999999999999999999999999998898888888766778999999999999999999999999
Q ss_pred ceeeecCcEEEEeccccCCH-HHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhH
Q 013203 164 KECVLDGALVLIYDTKISNS-NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIM 242 (447)
Q Consensus 164 ~~~~l~~p~Il~~d~~i~~~-~~~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~l 242 (447)
+..+++||+|+++|++|+.. .+++++++++.++|+||+|++++|+++++++|+.|+.+|.++|++||+|++|++|+++|
T Consensus 210 ~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l 289 (529)
T CHL00093 210 MEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAML 289 (529)
T ss_pred ceEEecCceehhhcCCCCchHHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHH
Confidence 99999999999999999987 88999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEeCCCChhhHHHHHHHHHHHhhhccc----HHHHHHH
Q 013203 243 EDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRL 318 (447)
Q Consensus 243 e~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~----~~l~eR~ 318 (447)
+|||++|||++++++.|.+++++++++||+|++|+++++++++++ .++++.+..|+.+++++++.+++ ++|+|||
T Consensus 290 ~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~ 368 (529)
T CHL00093 290 EDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERL 368 (529)
T ss_pred HHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 999999999999988888899999999999999999999999998 56789999999999999988877 9999999
Q ss_pred hhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHH
Q 013203 319 AKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT--TNSDQKIGVQIVQNAL 396 (447)
Q Consensus 319 a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~--~~~~~~~~i~~~a~AL 396 (447)
+||+|+++||+|||+|+.+++|+||+++||+|++|+++++|+|||||++|+++|+.|++++. .++++|+|+++|++||
T Consensus 369 ~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL 448 (529)
T CHL00093 369 AKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAI 448 (529)
T ss_pred HHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999864 4899999999999999
Q ss_pred --------------------HhhhcCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 397 --------------------KLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 397 --------------------kl~~~~~~~~G~d~~~~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
+++ ..+.++|||+.+|+++||++.|||||+.||+++|++|+++|++||+|
T Consensus 449 ~~ip~~La~NaG~d~~~v~~~l~-~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~i 518 (529)
T CHL00093 449 LAPLKRIAENAGKNGSVIIEKVQ-EQDFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTT 518 (529)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHH-ccCCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 222 23457999999999999999999999999999999999999999986
No 10
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.4e-92 Score=747.23 Aligned_cols=440 Identities=40% Similarity=0.570 Sum_probs=415.2
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|+++||++.+. +.+++++|++||+|+||||||+++||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 53 G~tIlk~i~~~hp~~~~~--akll~~~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~ 130 (541)
T PRK12851 53 GVTIAKEIELEDKFENMG--AQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEE 130 (541)
T ss_pred HHHHHHHccCCCchhhHH--HHHHHHHHHhhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999955533 45569999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccccceeecCCcccceeEEEeeEEEeecccCccccccccc
Q 013203 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (447)
Q Consensus 84 L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~p~~~~~~~~ 163 (447)
|+++++|+++.+++.++|++|+++++.+++++++|+.+++++|.|+++.+....+++++++|++|++||.+|||+++++.
T Consensus 131 L~~~s~~~~~~~~l~~va~~s~~~~~~l~~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~ 210 (541)
T PRK12851 131 LKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADK 210 (541)
T ss_pred HHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCC
Confidence 99999999888889999999998899999999999999998888888876555678999999999999999999999989
Q ss_pred ceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHH
Q 013203 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (447)
Q Consensus 164 ~~~~l~~p~Il~~d~~i~~~~~~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (447)
++.+++||+|+++|+++++.++++++++++.++|+||||++++|+++|+++|+.|+++|.++|++||+|+||++|+++|+
T Consensus 211 ~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~ 290 (541)
T PRK12851 211 MEAELEDPYILIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLE 290 (541)
T ss_pred CeEEecccEEEEEcCCcCcHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEeCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHh
Q 013203 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (447)
Q Consensus 244 ~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~----~~l~eR~a 319 (447)
|||++|||++++++.+++++++++++||+|+.|++.+++|+++++|+++++++.|+++|+++++++.+ ++|+|||+
T Consensus 291 ~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~ 370 (541)
T PRK12851 291 DIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLA 370 (541)
T ss_pred HHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999988777899999999999999999999999999999999999999999999988765 99999999
Q ss_pred hhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH---
Q 013203 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNAL--- 396 (447)
Q Consensus 320 ~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~AL--- 396 (447)
||+|+++||+|||+|+.+++|+||+++||+|++|+++++|||||||++|+++|..|++++..++++|+|+++|++||
T Consensus 371 ~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~i 450 (541)
T PRK12851 371 KLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAVKALDKLETANGDQRTGVEIVRRALEAP 450 (541)
T ss_pred HhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998766889999999999999
Q ss_pred -----------------HhhhcCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 397 -----------------KLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 397 -----------------kl~~~~~~~~G~d~~~~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
++++. ..++|||+.+|+++||++.|||||+.||+++|++|+++|++||+|
T Consensus 451 p~~La~NaG~d~~~vl~~l~~~-~~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~i 517 (541)
T PRK12851 451 VRQIAENAGAEGSVVVGKLREK-PGGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTT 517 (541)
T ss_pred HHHHHHhcCCCHHHHHHHHHhh-CCCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhH
Confidence 23222 346999999999999999999999999999999999999999986
No 11
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1.3e-91 Score=748.94 Aligned_cols=440 Identities=31% Similarity=0.483 Sum_probs=414.9
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|++.||++.+. +.+++++|++||+++||||||++|||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 108 G~TIlk~i~~~hP~~~~g--akll~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~ 185 (600)
T PLN03167 108 GVTVAKEVELEDPVENIG--AKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKE 185 (600)
T ss_pred HHHHHHHcccCCchhhHH--HHHHHHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999975533 55669999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccccceeecCCcccceeEEEeeEEEeecccCccccccccc
Q 013203 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (447)
Q Consensus 84 L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~p~~~~~~~~ 163 (447)
|+++++|+++ ++|.++|++|+++++.|++++++|+.+++++|.|.+++|++..|++++++|++|++||.||||+++++.
T Consensus 186 L~~~s~~v~d-~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~ 264 (600)
T PLN03167 186 LKKMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEK 264 (600)
T ss_pred HHHhcccCCH-HHHHHHHHHhccCcHHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCC
Confidence 9999999975 679999999999999999999999999999899999999999888899999999999999999999999
Q ss_pred ceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHH
Q 013203 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (447)
Q Consensus 164 ~~~~l~~p~Il~~d~~i~~~~~~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (447)
|+.+++||+|+++|++|+++++++++++++.++|+||||++++|+++++++|+.|+++|.++|++||+|+||++++++|+
T Consensus 265 m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~ 344 (600)
T PLN03167 265 MSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLD 344 (600)
T ss_pred CeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEeCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHh
Q 013203 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (447)
Q Consensus 244 ~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~----~~l~eR~a 319 (447)
|||++|||++++++.+++++++++++||+|++|++.+++++++++.++++.+++|+.+|+..++++++ ++|++||+
T Consensus 345 dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~ 424 (600)
T PLN03167 345 DIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIA 424 (600)
T ss_pred HHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHh
Confidence 99999999999988888899999999999999999999999999999999999999999999877665 89999999
Q ss_pred hhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHHhcCC-CchhH-HHHHHHHHHH-
Q 013203 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTT-NSDQK-IGVQIVQNAL- 396 (447)
Q Consensus 320 ~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~-~~~~~-~~i~~~a~AL- 396 (447)
+|+|++++|+|||+|+.+++|+||+++||+|++|+++++|+|||||++|+++|+.|++++.. ++++| .|+++|++||
T Consensus 425 ~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~ 504 (600)
T PLN03167 425 KLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALS 504 (600)
T ss_pred hcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998753 55655 6699999999
Q ss_pred -------------------HhhhcCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 397 -------------------KLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 397 -------------------kl~~~~~~~~G~d~~~~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
+++.+++.++|||+.+|++.||++.|||||+.||+++|++|+++|++||+|
T Consensus 505 ~p~r~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~i 574 (600)
T PLN03167 505 YPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTS 574 (600)
T ss_pred cchhhhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHH
Confidence 443345668999999999999999999999999999999999999999986
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-82 Score=640.96 Aligned_cols=435 Identities=38% Similarity=0.568 Sum_probs=419.6
Q ss_pred HHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHHh
Q 013203 7 SLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLD 85 (447)
Q Consensus 7 ~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~L~ 85 (447)
|+.|++++.++.-.+. +.++++++....+++||||||+++||++|.+++.+-+. |.+|+.|++|+.+|++.+++.|+
T Consensus 68 Tva~si~l~d~~~n~g--aklvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~ 145 (550)
T KOG0356|consen 68 TVAKSIELKDKYENIG--AKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELK 145 (550)
T ss_pred eeeccccccchhhhhc--cHHHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHH
Confidence 5678999999999877 88999999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccccceeecCCcccceeEEEeeEEEeecccCcccccccccce
Q 013203 86 CQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKE 165 (447)
Q Consensus 86 ~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~p~~~~~~~~~~ 165 (447)
++++||++.+++.+||++|+|+|..+++++.+|+.++|++|.|+|+.|+++.|++++++||.||+||+||||+++++...
T Consensus 146 k~sk~Vtt~eeIaqVAtiSAngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~ 225 (550)
T KOG0356|consen 146 KMSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQK 225 (550)
T ss_pred HhCCCCCCHHHHHHHHhhhcCCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHH
Q 013203 166 CVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDL 245 (447)
Q Consensus 166 ~~l~~p~Il~~d~~i~~~~~~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~l 245 (447)
++|++|++++++.+|+++++|.|.||...+..+||+|+++||+.++|++|+.|++++.++++|||+|+||+.|++.+.|+
T Consensus 226 ~e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Di 305 (550)
T KOG0356|consen 226 VEFENALLLLSEKKISSVQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDI 305 (550)
T ss_pred hhhhhhhhhhhhhhhhHHHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCEEeeCCCC-CCcCCCCCCCceeeeEEEEecceEEEEeCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHhh
Q 013203 246 AILTGGQVLTGGSG-MNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAK 320 (447)
Q Consensus 246 a~~tGa~i~~~~~~-~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~----~~l~eR~a~ 320 (447)
|.+|||+++..+.+ +++++.++++||.++++.++.+.+.++.+.+++++++.||++++..++.+++ ++|+||+++
T Consensus 306 ai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ 385 (550)
T KOG0356|consen 306 AILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAK 385 (550)
T ss_pred HHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Confidence 99999999999988 6999999999999999999999999999999999999999999988888776 999999999
Q ss_pred hcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHH---
Q 013203 321 LSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNAL--- 396 (447)
Q Consensus 321 l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~-~~~~~~~~i~~~a~AL--- 396 (447)
|+|++++|.|||.|+.|++|++.+++||||++++|+++|+|||||+++++|+..|..+.. .+..++.|++++.+||
T Consensus 386 ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeGivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P 465 (550)
T KOG0356|consen 386 LSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEGIVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLP 465 (550)
T ss_pred hcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcCcccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999998876 4788999999999999
Q ss_pred -----------------HhhhcCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013203 397 -----------------KLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNA 446 (447)
Q Consensus 397 -----------------kl~~~~~~~~G~d~~~~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~ 446 (447)
|++ . .++|||..+|+|+||++.||+||++|.+++|..|.++|+++++
T Consensus 466 ~~~IakNAGvdg~~vv~Kv~-~--~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~t 529 (550)
T KOG0356|consen 466 AQTIAKNAGVDGSVVVEKVL-N--DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTT 529 (550)
T ss_pred HHHHHHhcCCchHHHHHHHH-h--hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhh
Confidence 444 2 3899999999999999999999999999999999999999875
No 13
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-74 Score=609.10 Aligned_cols=376 Identities=18% Similarity=0.235 Sum_probs=337.4
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|++.||+++++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 54 G~tIlk~i~~~hP~a~l~------~~~a~~qd~~~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~ 127 (484)
T cd03342 54 GNVLLSEMQIQHPTASMI------ARAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKF 127 (484)
T ss_pred HHHHHHhccCcCHHHHHH------HHHHHHhhhHhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 6999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC---CHHHHHHHHHHhcCCC------hhHHHHHHHHHHhhcccc-c-----ceee--cCCcccceeEEEeeE
Q 013203 84 LDCQARKIT---TFEEIAQVGTTAANGD------GEIGELIAKVFEKGWEND-L-----ITIF--DRKALYNELNFVKGM 146 (447)
Q Consensus 84 L~~~~~~v~---~~~~l~~va~ts~~~~------~~l~~li~~A~~~vg~~~-~-----I~v~--~g~~~~d~~~~~~G~ 146 (447)
|++++.|++ +.+.+.++|++|++++ +.|++++++|+..+++++ . |++. +|++. +++++++|+
T Consensus 128 L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~-~ds~~i~G~ 206 (484)
T cd03342 128 LESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSD-SDTKLIRGL 206 (484)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCCh-hhceEEeeE
Confidence 999999997 7788999999999864 789999999999998765 2 3333 67777 469999999
Q ss_pred EEeecccCcccccccccceeeecCcEEEEeccccCCHHH-HHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCc
Q 013203 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNV-IRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEK 225 (447)
Q Consensus 147 ~~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~-~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~ 225 (447)
+|+++|.+|+|+ .+++||+|+++|++++..+. +... .-.+|||++++|++.++++|..|+
T Consensus 207 ~~~~~~~~~~m~-------~~~~n~~Ill~~~~le~~~~~~~~~------~~~~lvi~~~~I~~~al~~l~~~~------ 267 (484)
T cd03342 207 VLDHGARHPDMP-------KRVENAYILTCNVSLEYEKTEVNSG------FFYSVVINQKGIDPPSLDMLAKEG------ 267 (484)
T ss_pred EEecCCCCCCCC-------ccccCceEEEEeCCCCCCccccCcE------EEEEEEEeCCCccHHHHHHHHHCC------
Confidence 999999999983 36889999999999887643 2211 114699999999999999999873
Q ss_pred eEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEE---EEecceEEEEeCCCChhhHHHHHHHH
Q 013203 226 VCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVIIGGSGELVDIQERCEQL 302 (447)
Q Consensus 226 i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v---~i~~~~~~~i~g~~~~~~i~~r~~~l 302 (447)
|++||+ .++++|+|||++|||+++++ ++++++++||+|++| ++++++|+++++|+++
T Consensus 268 I~av~~-----~~~~~l~~ia~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~---------- 327 (484)
T cd03342 268 ILALRR-----AKRRNMERLTLACGGVAMNS-----VDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNP---------- 327 (484)
T ss_pred CeEEEe-----CCHHHHHHHHHHhCCEEecc-----cccCChhhCcccceEEEEEECCeEEEEEECCCCC----------
Confidence 899996 45678999999999999996 899999999999999 5788899999999876
Q ss_pred HHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC-CcCChhHHHHHHHHHHHHhcC-
Q 013203 303 RSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQT- 380 (447)
Q Consensus 303 ~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~- 380 (447)
++|||+|||+|+.+++|+||+++||++++|+++++| +|||||++|+++|..|++++.
T Consensus 328 ---------------------~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~ 386 (484)
T cd03342 328 ---------------------KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKS 386 (484)
T ss_pred ---------------------cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhc
Confidence 469999999999999999999999999999999999 999999999999999999876
Q ss_pred CCchhHHHHHHHHHHH--------------------Hhh--h-cCCCCeeEeCCCCccccccccCcccccccHHHHHHHH
Q 013203 381 TNSDQKIGVQIVQNAL--------------------KLL--E-QDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKA 437 (447)
Q Consensus 381 ~~~~~~~~i~~~a~AL--------------------kl~--~-~~~~~~G~d~~~~~~~dm~~~gI~Dp~~v~~~al~~A 437 (447)
.++++|+++++|++|| +++ | .++.++|||+.+|+++||++.|||||+.||+++|+.|
T Consensus 387 ~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A 466 (484)
T cd03342 387 VKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSA 466 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHH
Confidence 4899999999999999 333 1 3456799999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 013203 438 TSMISLKNAI 447 (447)
Q Consensus 438 ~~~A~~iL~i 447 (447)
+++|++||+|
T Consensus 467 ~e~a~~iL~I 476 (484)
T cd03342 467 TVIASQLLLV 476 (484)
T ss_pred HHHHHHHhhh
Confidence 9999999997
No 14
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.5e-74 Score=607.64 Aligned_cols=382 Identities=18% Similarity=0.229 Sum_probs=337.9
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|+++||+++++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~TIlk~i~i~hP~a~ll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 131 (531)
T TIGR02347 58 GNVLLNEMQIQHPTASMI------ARAATAQDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEF 131 (531)
T ss_pred HHHHHHhccccChHHHHH------HHHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999988 6999999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcccccc---CCHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccccc-c-----ee--ecCCcccceeEEEeeE
Q 013203 84 LDCQARKI---TTFEEIAQVGTTAANG------DGEIGELIAKVFEKGWENDL-I-----TI--FDRKALYNELNFVKGM 146 (447)
Q Consensus 84 L~~~~~~v---~~~~~l~~va~ts~~~------~~~l~~li~~A~~~vg~~~~-I-----~v--~~g~~~~d~~~~~~G~ 146 (447)
|++++.|+ .+.+.|.++|++++++ ++.|++++++|+..+++++. | ++ ..|++. +++++++|+
T Consensus 132 L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~-~ds~~v~Gi 210 (531)
T TIGR02347 132 LDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSA-TDTTLIRGL 210 (531)
T ss_pred HHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCc-cccEEEeeE
Confidence 99999764 4678899999999864 78999999999999987653 3 33 256666 579999999
Q ss_pred EEeecccCcccccccccceeeecCcEEEEeccccCCH-------------HH-----------HHHHHHHHHhcCC----
Q 013203 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNS-------------NV-----------IRQASLPCMMQGQ---- 198 (447)
Q Consensus 147 ~~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~-------------~~-----------~~~~le~i~~~~~---- 198 (447)
+|+++|.+|+|++ +++||+|+++|++++.. ++ +..+++++.+.|.
T Consensus 211 v~~~~~~~~~~~~-------~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~ 283 (531)
T TIGR02347 211 VLDHGARHPDMPR-------RVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCG 283 (531)
T ss_pred EEecCcCCCCCce-------eccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999843 78999999999876432 22 3455677777551
Q ss_pred ---C---EEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCcee
Q 013203 199 ---S---LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS 272 (447)
Q Consensus 199 ---~---lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~ 272 (447)
+ ||+++++|++.++++|..+ +|+++++. ++++|+|||++|||+++++ ++++++++||+
T Consensus 284 ~~~~~~~lvi~~k~I~~~a~~~L~~~------~I~~i~rv-----~~~~le~ia~~tGa~~i~~-----l~~~~~~~LG~ 347 (531)
T TIGR02347 284 KSPDKGFVVINQKGIDPPSLDLLAKE------GIMALRRA-----KRRNMERLTLACGGEALNS-----VEDLTPECLGW 347 (531)
T ss_pred cCCCccEEEEeCCCccHHHHHHHHHC------CceEEccC-----CHHHHHHHHHHhCCEEecc-----cccCCcccccc
Confidence 3 8889999999999988874 58999864 4568999999999999986 89999999999
Q ss_pred eeEE---EEecceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHH
Q 013203 273 CKRV---IATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNAL 349 (447)
Q Consensus 273 a~~v---~i~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl 349 (447)
|+.| ++++++|++|++|+++ ++|||+|||+|+.+++|+||+++||+
T Consensus 348 ~~~v~~~~ig~~~~~~i~~~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~l~DAl 396 (531)
T TIGR02347 348 AGLVYETSIGEEKYTFIEEVKNP-------------------------------KSCTILIKGPNDHTIKQIKDAVRDGL 396 (531)
T ss_pred ceEEEEEEECCeEEEEEEcCCCC-------------------------------CeEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 9999 6788999999998876 46999999999999999999999999
Q ss_pred HHHHHHHhcC-CcCChhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHH--------------------Hhh--h-cCCC
Q 013203 350 HAVQAAKEEG-IVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNAL--------------------KLL--E-QDSS 404 (447)
Q Consensus 350 ~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~-~~~~~~~~i~~~a~AL--------------------kl~--~-~~~~ 404 (447)
|++|+++++| +|||||++|+++|..|++++. .++++|+++++|++|| +++ | .++.
T Consensus 397 ~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~ 476 (531)
T TIGR02347 397 RAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGE 476 (531)
T ss_pred HHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCC
Confidence 9999999998 999999999999999999866 4899999999999999 332 2 3445
Q ss_pred CeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 405 DLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 405 ~~G~d~~~~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
++|||+.+|++.||++.|||||+.||+++|++|+++|++||||
T Consensus 477 ~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrI 519 (531)
T TIGR02347 477 VVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLV 519 (531)
T ss_pred ceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhH
Confidence 7899999999999999999999999999999999999999997
No 15
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.4e-73 Score=606.75 Aligned_cols=382 Identities=19% Similarity=0.278 Sum_probs=345.7
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..+|||+|++.||+|+++ +++|++||+++||||||+++||++|++++.++++ |+||+.|++||++|.+.++++
T Consensus 57 G~tIlk~l~~~hP~a~ll------~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 130 (517)
T cd03343 57 GATILKEMDIEHPAAKML------VEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALEL 130 (517)
T ss_pred HHHHHHHccCcCHHHHHH------HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 579999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCCC------hhHHHHHHHHHHhhccccc---------cee--ecCCcccceeEEEe
Q 013203 84 LDCQARKIT--TFEEIAQVGTTAANGD------GEIGELIAKVFEKGWENDL---------ITI--FDRKALYNELNFVK 144 (447)
Q Consensus 84 L~~~~~~v~--~~~~l~~va~ts~~~~------~~l~~li~~A~~~vg~~~~---------I~v--~~g~~~~d~~~~~~ 144 (447)
|+++++|++ +.+.+.++|++|++++ +.|++++++|+.++++++. |+| .+|+++. ++++++
T Consensus 131 L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~-ds~lv~ 209 (517)
T cd03343 131 LDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVD-DTELIR 209 (517)
T ss_pred HHHhhcccCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHH-Hcceee
Confidence 999999986 6788999999999864 7899999999999987543 777 4788886 699999
Q ss_pred eEEEeecccCcccccccccceeeecCcEEEEeccc-------------cCCHHHHHHH-----------HHHHHhcCCCE
Q 013203 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIRQA-----------SLPCMMQGQSL 200 (447)
Q Consensus 145 G~~~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~-------------i~~~~~~~~~-----------le~i~~~~~~l 200 (447)
|++|+++|.+|+|+ ..++||+|++++++ +++++++.++ ++++.+.|+||
T Consensus 210 G~v~~~~~~~~~m~-------~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~l 282 (517)
T cd03343 210 GIVIDKEVVHPGMP-------KRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANV 282 (517)
T ss_pred eEEEeccCCCCCCc-------cccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999983 36899999999988 4777777665 44888999999
Q ss_pred EEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEEe-
Q 013203 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT- 279 (447)
Q Consensus 201 vii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i~- 279 (447)
||++++|++.++++|..+ ++++|++ +++++|+|||++|||+++++ ++++++++||+|+.|++.
T Consensus 283 vi~~~~I~~~al~~l~~~------gI~~v~~-----v~~~~l~~Ia~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ 346 (517)
T cd03343 283 VFCQKGIDDLAQHYLAKA------GILAVRR-----VKKSDMEKLARATGAKIVTN-----IDDLTPEDLGEAELVEERK 346 (517)
T ss_pred EEeCCCccHHHHHHHhHC------CcEEEEe-----CCHHHHHHHHHHhCCEEecc-----hhhCChhhCCccceEEEEE
Confidence 999999999999988753 5789985 56788999999999999996 889999999999999764
Q ss_pred --cceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHh
Q 013203 280 --MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE 357 (447)
Q Consensus 280 --~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~ 357 (447)
+++|+++++|++++ .+||+|||+|+.+++|+||+++||++++|++++
T Consensus 347 ig~~~~~~~~~~~~~~-------------------------------~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~ 395 (517)
T cd03343 347 VGDDKMVFVEGCKNPK-------------------------------AVTILLRGGTEHVVDELERALEDALRVVADALE 395 (517)
T ss_pred ECCeEEEEEEcCCCCc-------------------------------eEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88899999988763 589999999999999999999999999999999
Q ss_pred cC-CcCChhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHH--------------------Hhh--h-cCCCCeeEeCCC
Q 013203 358 EG-IVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNAL--------------------KLL--E-QDSSDLGYNPAR 412 (447)
Q Consensus 358 ~g-vVpGGGa~e~~~s~~L~~~~~-~~~~~~~~i~~~a~AL--------------------kl~--~-~~~~~~G~d~~~ 412 (447)
+| +|||||++|+++|..|++++. .++++|+++++|++|| +++ | .++.++|||+.+
T Consensus 396 ~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~ 475 (517)
T cd03343 396 DGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYT 475 (517)
T ss_pred CCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCC
Confidence 98 999999999999999999866 4899999999999999 333 2 255679999999
Q ss_pred CccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 413 GNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 413 ~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
|++.||++.|||||+.||+++++.|+++|++||+|
T Consensus 476 g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 510 (517)
T cd03343 476 GEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRI 510 (517)
T ss_pred CCccchhhcCceecHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999986
No 16
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=2.6e-73 Score=604.37 Aligned_cols=382 Identities=19% Similarity=0.260 Sum_probs=343.7
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|+++||+||++ +++|++||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIlk~l~~~hP~a~ll------~~~a~~qd~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 131 (519)
T TIGR02339 58 GATILKEMDIEHPAAKML------VEVAKTQDAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEI 131 (519)
T ss_pred HHHHHHhccCCCHHHHHH------HHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC--HHHHHHHHHHhcCCC-------hhHHHHHHHHHHhhcc---ccc-------cee--ecCCcccceeEE
Q 013203 84 LDCQARKITT--FEEIAQVGTTAANGD-------GEIGELIAKVFEKGWE---NDL-------ITI--FDRKALYNELNF 142 (447)
Q Consensus 84 L~~~~~~v~~--~~~l~~va~ts~~~~-------~~l~~li~~A~~~vg~---~~~-------I~v--~~g~~~~d~~~~ 142 (447)
|+++++|++. .+.|.++|++|++++ +.|++++++|+.++++ +|. |++ .+|+++. ++++
T Consensus 132 L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~-ds~l 210 (519)
T TIGR02339 132 IDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSID-DTEL 210 (519)
T ss_pred HHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChh-ccee
Confidence 9999999863 578999999999754 7899999999999975 453 445 4788886 6999
Q ss_pred EeeEEEeecccCcccccccccceeeecCcEEEEeccc-------------cCCHHHHHHHHH-----------HHHhcCC
Q 013203 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIRQASL-----------PCMMQGQ 198 (447)
Q Consensus 143 ~~G~~~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~-------------i~~~~~~~~~le-----------~i~~~~~ 198 (447)
++|++|+++|.+|.| +..++||+|++++++ +++++++.++++ ++++.|+
T Consensus 211 v~G~vi~~~~~~~~m-------~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~ 283 (519)
T TIGR02339 211 VEGIVVDKEPVHPGM-------PKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGA 283 (519)
T ss_pred EeeEEEecCCCCCCC-------ccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999865 347899999999987 677888877766 7999999
Q ss_pred CEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEE
Q 013203 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA 278 (447)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i 278 (447)
|||+++++|++.++++|..+ +|++|++ +++++|+|||++|||+++++ ++++++++||+|++|++
T Consensus 284 ~lvi~~~~I~~~al~~L~~~------gI~~v~~-----v~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~ 347 (519)
T TIGR02339 284 NVVFCQKGIDDLAQHYLAKA------GILAVRR-----VKKSDIEKLARATGAKIVSS-----IKEITESDLGYAGLVEE 347 (519)
T ss_pred cEEEECCCccHHHHHHHHHC------CCEEEec-----CCHHHHHHHHHHhCCEEeCc-----hhhCChhhccCCceEEE
Confidence 99999999999999988743 5788885 56788999999999999996 78889999999999986
Q ss_pred e---cceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHH
Q 013203 279 T---MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (447)
Q Consensus 279 ~---~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a 355 (447)
. +++|+++++|+++. .+||+|||+|+.+++|.||+++||+|++|++
T Consensus 348 ~~ig~~~~~~~~~~~~~~-------------------------------~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~ 396 (519)
T TIGR02339 348 RKVGDDKMTFVEGCKNPK-------------------------------AVTILLRGGTEHVVDELERSIQDALHVVASA 396 (519)
T ss_pred EEECCeEEEEEEcCCCCC-------------------------------EEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5 48999999987653 5899999999999999999999999999999
Q ss_pred HhcC-CcCChhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHH--------------------Hhh--h-cCCCCeeEeC
Q 013203 356 KEEG-IVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNAL--------------------KLL--E-QDSSDLGYNP 410 (447)
Q Consensus 356 ~~~g-vVpGGGa~e~~~s~~L~~~~~-~~~~~~~~i~~~a~AL--------------------kl~--~-~~~~~~G~d~ 410 (447)
+++| +|||||++|+++|+.|++++. .++++++++++|++|| +++ | .++.++|||+
T Consensus 397 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~ 476 (519)
T TIGR02339 397 LEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINV 476 (519)
T ss_pred hcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEc
Confidence 9998 999999999999999999866 4889999999999999 332 2 2456799999
Q ss_pred CCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 411 ARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 411 ~~~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
.+|++.||++.|||||+.||+++++.|+++|++||+|
T Consensus 477 ~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 513 (519)
T TIGR02339 477 FTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRI 513 (519)
T ss_pred CCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999999986
No 17
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.6e-73 Score=601.62 Aligned_cols=387 Identities=16% Similarity=0.205 Sum_probs=340.5
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|+++||+|+++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 50 G~tIlk~i~~~hP~akll------~~~a~~q~~~~GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 123 (527)
T cd03335 50 GATILKLLEVEHPAAKIL------VELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKY 123 (527)
T ss_pred HHHHHHhccccChHHHHH------HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred Hhc-cccccC--CHHHHHHHHHHhcC-----C-ChhHHHHHHHHHHhhc---cccc-------cee--ecCCcccceeEE
Q 013203 84 LDC-QARKIT--TFEEIAQVGTTAAN-----G-DGEIGELIAKVFEKGW---ENDL-------ITI--FDRKALYNELNF 142 (447)
Q Consensus 84 L~~-~~~~v~--~~~~l~~va~ts~~-----~-~~~l~~li~~A~~~vg---~~~~-------I~v--~~g~~~~d~~~~ 142 (447)
|++ +++|++ +.+.|.++|++|++ + .+.|++++++|+..++ .+|. |++ .+|+++. ++++
T Consensus 124 L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~-~s~l 202 (527)
T cd03335 124 IKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAK-ESYL 202 (527)
T ss_pred HHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChh-hcce
Confidence 996 899987 67889999999987 2 4789999999999985 2232 333 3788886 6999
Q ss_pred EeeEEEeecccCcccccccccceeeecCcEEEEeccccCC-------------HHH-----------HHHHHHHHHhcCC
Q 013203 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN-------------SNV-----------IRQASLPCMMQGQ 198 (447)
Q Consensus 143 ~~G~~~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~-------------~~~-----------~~~~le~i~~~~~ 198 (447)
++|++|+++|.+|.| +..++||+|++++++++. +++ +.++++++.+.|+
T Consensus 203 i~Givi~~~~~~~~m-------~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~ 275 (527)
T cd03335 203 VNGYALNCTRASQGM-------PTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGA 275 (527)
T ss_pred eeeEEEecccCCCCC-------cccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999865 347899999999987653 222 3367888889999
Q ss_pred CEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCC-CcCCCCCCCceeeeEEE
Q 013203 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFVPLKLGSCKRVI 277 (447)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~-~~~~~~~~~LG~a~~v~ 277 (447)
||||++++|++.++++|..+ +|+++++ +++++|+|||++|||+++++..++ ..+++++++||+|++|+
T Consensus 276 ~lvi~~k~I~d~al~~L~~~------~I~~v~~-----v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~ 344 (527)
T cd03335 276 NVVLTTGGIDDMCLKYFVEA------GAMAVRR-----VKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVV 344 (527)
T ss_pred CEEEeCCCCcHHHHHHHHHC------CcEEEEe-----CCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEE
Confidence 99999999999999999875 5889985 567889999999999999985444 23456677899999998
Q ss_pred ---EecceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHH
Q 013203 278 ---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (447)
Q Consensus 278 ---i~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~ 354 (447)
+++++|++|++|+++ ++|||+|||+|+.+++|+||+++||+|++++
T Consensus 345 ~~~ig~~~~~~i~g~~~~-------------------------------~~~TIllrG~t~~~l~e~er~i~Dal~~~~~ 393 (527)
T cd03335 345 QERIGDDELILIKGTKKR-------------------------------SSASIILRGANDFMLDEMERSLHDALCVVKR 393 (527)
T ss_pred EEEECCeEEEEEEcCCCC-------------------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 788899999998764 5799999999999999999999999999999
Q ss_pred HHhcC-CcCChhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHH--------------------Hhh--h-cC-------
Q 013203 355 AKEEG-IVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNAL--------------------KLL--E-QD------- 402 (447)
Q Consensus 355 a~~~g-vVpGGGa~e~~~s~~L~~~~~-~~~~~~~~i~~~a~AL--------------------kl~--~-~~------- 402 (447)
++++| +|||||++|+++|..|++++. .++++++++++|++|| +++ | .+
T Consensus 394 ~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~ 473 (527)
T cd03335 394 TLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKK 473 (527)
T ss_pred HhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccc
Confidence 99999 999999999999999999866 4899999999999999 332 2 22
Q ss_pred -CCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 403 -SSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 403 -~~~~G~d~~~~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
++++|||+.+|++.||++.|||||+.||.++|+.|+++|++||||
T Consensus 474 ~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrI 519 (527)
T cd03335 474 HLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRI 519 (527)
T ss_pred cCceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 346899999999999999999999999999999999999999997
No 18
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-74 Score=608.31 Aligned_cols=413 Identities=31% Similarity=0.436 Sum_probs=328.6
Q ss_pred HHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHH
Q 013203 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (447)
Q Consensus 6 ~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~L 84 (447)
.+|||+|+++||.||++ +++|++||+++||||||+||||++||++|.++++ |+||+.|++||++|.+.++++|
T Consensus 54 ~tIlkeielehp~akll------~eva~~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l 127 (524)
T COG0459 54 VTILKEIELEHPGAKLL------VEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEEL 127 (524)
T ss_pred ceehhhhhccCchhHHH------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999977 7999999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccCCHH-----HHHHHHHHhcCCChhHHHHHHHHHHhhcc-----cccceeecCCcccceeEEEeeEEEeecccC
Q 013203 85 DCQARKITTFE-----EIAQVGTTAANGDGEIGELIAKVFEKGWE-----NDLITIFDRKALYNELNFVKGMKLEWGLKS 154 (447)
Q Consensus 85 ~~~~~~v~~~~-----~l~~va~ts~~~~~~l~~li~~A~~~vg~-----~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~ 154 (447)
+++++|+++.+ ...++++.++++++.|++++++|+.+++. ++.+.++.+++..+++++++||+||+||.+
T Consensus 128 ~~~a~~v~~~~~~~~~~~t~v~sk~~~~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s 207 (524)
T COG0459 128 KEIAKPVSDSEEELKIAITSVASKSANSDEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLS 207 (524)
T ss_pred HHhhccCCcchhhhhhhhheeeeeeccChHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccC
Confidence 99999998654 44455555555678999999999999998 777778766666678999999999999999
Q ss_pred cccccccccceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCc
Q 013203 155 PYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 234 (447)
Q Consensus 155 p~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~ 234 (447)
|||.++ .+++||+|+++|++|+..+..+| ++...+.+.||+++++++..+++..++.|.+++..++++|+.|+|
T Consensus 208 ~~~~~~-----~~~e~~~Ili~d~~l~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi 281 (524)
T COG0459 208 PYFMPD-----KRLENPKILLLDKKLEIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGI 281 (524)
T ss_pred CCCCCc-----cccccceEEEEccccccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 999654 57889999999999887766666 555555556666666666666666666666666666666666666
Q ss_pred ccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEeCCCChhhHHHHHHHHHHHhhhc-cc--
Q 013203 235 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLS-TS-- 311 (447)
Q Consensus 235 g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~-~~-- 311 (447)
+|+++..|+|++++||.++.+++.+ .....+|.|..|.+.++.+....|.+. ..++++. .+
T Consensus 282 ~D~~~~~L~d~~Ilt~~~v~~~dl~-----~~l~~~~ga~~v~~~~d~t~~~~G~~~-----------~~~ve~~~~~~~ 345 (524)
T COG0459 282 DDLAKAYLEDIAILTGRRVKKEDLG-----ERLAKLGGAKIVSVLKDLTTIVLGEGA-----------AGLVEETKTGDY 345 (524)
T ss_pred cHHHHHHHHhhcceecceecchhhH-----HHHHHccCceEEeecccCceeecCccc-----------cceEEEeeccch
Confidence 6666655555555555555554321 133344444444444444433333210 0111111 11
Q ss_pred --HHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC-CcCChhHHHHHHHHHHHHh-cCCCc-hhH
Q 013203 312 --DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKL-QTTNS-DQK 386 (447)
Q Consensus 312 --~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~-~~~~~-~~~ 386 (447)
+++++|.++ .|++|||+|||+|+.+++|+||++|||||++|+++++| +|||||++|++++..|++| ...++ ++|
T Consensus 346 ~~~~~~~~~~~-~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~ 424 (524)
T COG0459 346 DMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQ 424 (524)
T ss_pred hhhhhhhhhhc-CCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHH
Confidence 566677777 88999999999999999999999999999999999999 9999999999999999998 44455 999
Q ss_pred HHHHHHHHHH--------------------HhhhcCC-CCeeEeCCCCcc-ccccccCcccccccHHHHHHHHHHHHHHH
Q 013203 387 IGVQIVQNAL--------------------KLLEQDS-SDLGYNPARGNY-VDMFKCGDVDPLKHVPSEFAKATSMISLK 444 (447)
Q Consensus 387 ~~i~~~a~AL--------------------kl~~~~~-~~~G~d~~~~~~-~dm~~~gI~Dp~~v~~~al~~A~~~A~~i 444 (447)
+|+++|++|| +|++..+ +++|||+.+|++ .||++.|||||++||+++|++|+++|+++
T Consensus 425 ~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~ll 504 (524)
T COG0459 425 LGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLL 504 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcccCCccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHHHH
Confidence 9999999999 4443322 459999999999 78999999999999999999999999999
Q ss_pred hcC
Q 013203 445 NAI 447 (447)
Q Consensus 445 L~i 447 (447)
|+|
T Consensus 505 L~~ 507 (524)
T COG0459 505 LTI 507 (524)
T ss_pred HHH
Confidence 985
No 19
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.4e-72 Score=598.58 Aligned_cols=389 Identities=17% Similarity=0.194 Sum_probs=338.4
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..+|||+|++.||+++++ +++|++||+++||||||+++||++|++++.++++ |+||+.|++||+.|.+.++++
T Consensus 50 G~tIlk~l~~~hp~a~ll------~~~a~~q~~~~GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 123 (515)
T cd03338 50 GATILKQMSVLHPAAKML------VELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEI 123 (515)
T ss_pred HHHHHHhCcCcCHHHHHH------HHHHHHHHhHhcCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccccc----------ceeecCCcccceeEEEee
Q 013203 84 LDCQARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWENDL----------ITIFDRKALYNELNFVKG 145 (447)
Q Consensus 84 L~~~~~~v~--~~~~l~~va~ts~~------~~~~l~~li~~A~~~vg~~~~----------I~v~~g~~~~d~~~~~~G 145 (447)
|++++.|++ +.++|.++|++|++ +++.|++++++|+.++++++. |....|+++.| +++++|
T Consensus 124 L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~d-s~lv~G 202 (515)
T cd03338 124 LDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIED-TELVDG 202 (515)
T ss_pred HHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhh-ceeeee
Confidence 999999986 67889999999998 467899999999999987652 44457888865 699999
Q ss_pred EEEeecccCcccccccccceeeecCcEEEEecccc-------------CCH-----------HHHHHHHHHHHhcCCCEE
Q 013203 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SNS-----------NVIRQASLPCMMQGQSLL 201 (447)
Q Consensus 146 ~~~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i-------------~~~-----------~~~~~~le~i~~~~~~lv 201 (447)
++|+++|.+|++. |+ .++||+++++++++ +++ +++.++++.+++.|+|||
T Consensus 203 iv~~k~~~~~~~~--p~----~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lv 276 (515)
T cd03338 203 LVFTQKASKKAGG--PT----RIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVL 276 (515)
T ss_pred EEEeccccCcCCC--Cc----cccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 9999999997631 11 34556665544332 222 456788999999999999
Q ss_pred EEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEE---
Q 013203 202 VVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA--- 278 (447)
Q Consensus 202 ii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i--- 278 (447)
|++++|++++++.++.|.+.+ .+|++|++ +++++|+|||++|||+++++ ++++++++||+|+.|++
T Consensus 277 i~~~~i~~~~v~~l~~~~l~~-~~I~av~~-----~~~~~LerIa~~tGa~ii~s-----l~~l~~~~LG~~~~v~~~~~ 345 (515)
T cd03338 277 LIQKSILRDAVSDLALHFLAK-LKIMVVKD-----IEREEIEFICKTIGCKPVAS-----IDHFTEDKLGSADLVEEVSL 345 (515)
T ss_pred EECCCcccccccHHHHHHHHH-CCceEEec-----CCHHHHHHHHHHHCCEEecc-----cccCCHhhCCCCceEEEEEE
Confidence 999999766666666666554 68999994 67788999999999999996 88899999999999975
Q ss_pred ecceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhc
Q 013203 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (447)
Q Consensus 279 ~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~ 358 (447)
++++++++.+|+++ ++.|||+|||+|+.+++|+||+++||+|++|+++++
T Consensus 346 g~~~~~~i~~~~~~------------------------------~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~ 395 (515)
T cd03338 346 GDGKIVKITGVKNP------------------------------GKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKK 395 (515)
T ss_pred CCeEEEEEEecCCC------------------------------CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35678999887642 357999999999999999999999999999999999
Q ss_pred C-CcCChhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHH--------------------Hhh--h-cCCCCeeEeCCCC
Q 013203 359 G-IVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNAL--------------------KLL--E-QDSSDLGYNPARG 413 (447)
Q Consensus 359 g-vVpGGGa~e~~~s~~L~~~~~-~~~~~~~~i~~~a~AL--------------------kl~--~-~~~~~~G~d~~~~ 413 (447)
| +|||||++|+++|+.|++++. .++++|+++++|++|| +++ | .++.++|||+.+|
T Consensus 396 ~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g 475 (515)
T cd03338 396 RALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKG 475 (515)
T ss_pred CCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCC
Confidence 8 999999999999999999866 4889999999999999 332 2 2566799999999
Q ss_pred ccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 414 NYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 414 ~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
++.||++.|||||+.||++++++|+++|++||+|
T Consensus 476 ~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~I 509 (515)
T cd03338 476 AITNILEENVVQPLLVSTSAITLATETVRMILKI 509 (515)
T ss_pred CccchhhcCceecHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999997
No 20
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.8e-72 Score=597.07 Aligned_cols=387 Identities=16% Similarity=0.200 Sum_probs=341.4
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|++.||+|+++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 54 G~tIlk~i~~~hP~akll------~~~a~~qd~~~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 127 (536)
T TIGR02340 54 GATILKLLEVEHPAAKIL------VELAQLQDREVGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKY 127 (536)
T ss_pred HHHHHHHhcccChHHHHH------HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 8999999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcc-ccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhc---cccc-------cee--ecCCcccceeEE
Q 013203 84 LDCQ-ARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGW---ENDL-------ITI--FDRKALYNELNF 142 (447)
Q Consensus 84 L~~~-~~~v~--~~~~l~~va~ts~~------~~~~l~~li~~A~~~vg---~~~~-------I~v--~~g~~~~d~~~~ 142 (447)
|+++ ++|++ +.+++.++|+++++ +++.|++++++|+..++ .+|. |++ .+|+++ +++++
T Consensus 128 L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~-~~s~~ 206 (536)
T TIGR02340 128 IKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSA-RESYL 206 (536)
T ss_pred HHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCc-cccEE
Confidence 9985 88887 67889999999987 47889999999999996 3342 333 478888 57999
Q ss_pred EeeEEEeecccCcccccccccceeeecCcEEEEeccccCCHH------------------------HHHHHHHHHHhcCC
Q 013203 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSN------------------------VIRQASLPCMMQGQ 198 (447)
Q Consensus 143 ~~G~~~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~~------------------------~~~~~le~i~~~~~ 198 (447)
++|++|+++|.+|.| +.+++||+|++++++++..+ .+.+.++.+++.|.
T Consensus 207 i~Gi~i~~~~~~~~m-------~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~ 279 (536)
T TIGR02340 207 VKGYALNCTRASQQM-------PKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGA 279 (536)
T ss_pred EEEEEEecccCCCCC-------cceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999865 34789999999998864332 23366788889999
Q ss_pred CEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCC-CcCCCCCCCceeeeEEE
Q 013203 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFVPLKLGSCKRVI 277 (447)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~-~~~~~~~~~LG~a~~v~ 277 (447)
+||+++++|++.++++|..+ +++++++ +++++|+|||++|||+++++..++ ..+++++++||+|+.|+
T Consensus 280 ~lvi~~k~I~~~a~~~L~k~------~I~~i~r-----v~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~ 348 (536)
T TIGR02340 280 NVVLTTGGIDDMCLKYFVEA------GAMGVRR-----CKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVV 348 (536)
T ss_pred CEEEeCCCCcHHHHHHHHHC------CcEEEec-----CCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEE
Confidence 99999999999999998875 4789985 456789999999999999986554 34567788899999998
Q ss_pred ---EecceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHH
Q 013203 278 ---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (447)
Q Consensus 278 ---i~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~ 354 (447)
+++++|++|++++++ ++|||+|||+|+.+++|+||+++||+|++|+
T Consensus 349 ~~~ig~~~~~~i~~~~~~-------------------------------~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~ 397 (536)
T TIGR02340 349 EERIADDECILIKGTKGR-------------------------------KSASIILRGANDFMLDEMERSLHDALCVVKR 397 (536)
T ss_pred EEEECCeEEEEEEcCCCC-------------------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 789999999998765 3699999999999999999999999999999
Q ss_pred HHhcC-CcCChhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHH--------------------Hhh--h-cC-------
Q 013203 355 AKEEG-IVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNAL--------------------KLL--E-QD------- 402 (447)
Q Consensus 355 a~~~g-vVpGGGa~e~~~s~~L~~~~~-~~~~~~~~i~~~a~AL--------------------kl~--~-~~------- 402 (447)
++++| +|||||++|+++|..|++++. .++++++++++|++|| +++ | .+
T Consensus 398 ~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~ 477 (536)
T TIGR02340 398 TLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKK 477 (536)
T ss_pred HhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccc
Confidence 99999 999999999999999998866 4889999999999999 232 1 12
Q ss_pred -CCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 403 -SSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 403 -~~~~G~d~~~~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
+.++|||+.+|++.||++.|||||+.||.++|+.|+++|++||+|
T Consensus 478 ~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~I 523 (536)
T TIGR02340 478 HLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRI 523 (536)
T ss_pred cCceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 346899999999999999999999999999999999999999997
No 21
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.1e-72 Score=596.72 Aligned_cols=388 Identities=17% Similarity=0.224 Sum_probs=336.3
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|++.||+|+++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 51 G~tIlk~i~~~hP~akll------~~~a~~qd~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~ 124 (517)
T TIGR02342 51 GATILKQMGVIHPAAKML------VELSKAQDIEAGDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKI 124 (517)
T ss_pred HHHHHHhccccChHHHHH------HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc---ccc-----ceee--cCCcccceeEEEee
Q 013203 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE---NDL-----ITIF--DRKALYNELNFVKG 145 (447)
Q Consensus 84 L~~~~~~v~--~~~~l~~va~ts~~~------~~~l~~li~~A~~~vg~---~~~-----I~v~--~g~~~~d~~~~~~G 145 (447)
|+++++|++ +.+.|.++|+||+++ .+.|++++++|+..+++ ++. |++. .|+++ +++++++|
T Consensus 125 L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~-~ds~li~G 203 (517)
T TIGR02342 125 LDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTI-DDTELIEG 203 (517)
T ss_pred HHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCCh-hhcEEEee
Confidence 999999986 678899999999973 44679999999999975 233 3443 57666 46999999
Q ss_pred EEEeecccCc-ccccccccceeeecCcEEEEecccc-------------CC-----------HHHHHHHHHHHHhcCCCE
Q 013203 146 MKLEWGLKSP-YFFTHKNKKECVLDGALVLIYDTKI-------------SN-----------SNVIRQASLPCMMQGQSL 200 (447)
Q Consensus 146 ~~~~~g~~~p-~~~~~~~~~~~~l~~p~Il~~d~~i-------------~~-----------~~~~~~~le~i~~~~~~l 200 (447)
++|+++|.++ .|+ ..++||+|++++.++ .+ .+++.++++++++.|+||
T Consensus 204 ivl~k~~~~~~~mp-------k~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~l 276 (517)
T TIGR02342 204 LVFTQKASRSAGGP-------TRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNV 276 (517)
T ss_pred EEEeccccccCCCC-------ccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 9999999983 332 245677777766543 12 234667899999999999
Q ss_pred EEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEE-E-
Q 013203 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI-A- 278 (447)
Q Consensus 201 vii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~-i- 278 (447)
|+++++|++++++.++.|.+.+ ++|++|++ +++++|+|||++|||+++++ ++++++++||+|+.|+ +
T Consensus 277 vi~~~~I~~~~l~~l~~~~l~~-~~I~av~~-----v~~~~LerIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ 345 (517)
T TIGR02342 277 LLIQKSILRDAVNDLALHFLAK-MKIMVVKD-----IEREEVEFICKTIGCKPIAS-----IDHFTADKLGSAELVEEVT 345 (517)
T ss_pred EEECCCcccccccHHHHHHHhh-CCceEEec-----CCHHHHHHHHHHHCCEEEcc-----hhhcCcccCcCCceEEEEE
Confidence 9999999777777777666666 78999994 56788999999999999996 8889999999999997 3
Q ss_pred -ecceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHh
Q 013203 279 -TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE 357 (447)
Q Consensus 279 -~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~ 357 (447)
+++.++++.+|+++ |++|||+|||+|+.+++|+||+++||++++|++++
T Consensus 346 ~~~~~~~~i~~~~~~------------------------------~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~ 395 (517)
T TIGR02342 346 TDGGKIIKITGIQNA------------------------------GKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVK 395 (517)
T ss_pred ECCeEEEEEEccCCC------------------------------CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677888887653 36799999999999999999999999999999999
Q ss_pred c-CCcCChhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHH--------------------Hhh--h-cCCCCeeEeCCC
Q 013203 358 E-GIVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNAL--------------------KLL--E-QDSSDLGYNPAR 412 (447)
Q Consensus 358 ~-gvVpGGGa~e~~~s~~L~~~~~-~~~~~~~~i~~~a~AL--------------------kl~--~-~~~~~~G~d~~~ 412 (447)
+ ++|||||++|+++|+.|++++. .++++|+++++|++|| +++ | +++.++|||+.+
T Consensus 396 ~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~ 475 (517)
T TIGR02342 396 KRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRK 475 (517)
T ss_pred CCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCC
Confidence 8 6999999999999999999866 4899999999999999 332 2 355679999999
Q ss_pred CccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 413 GNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 413 ~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
|+++||++.|||||+.||++++++|+++|++||+|
T Consensus 476 g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~i 510 (517)
T TIGR02342 476 GGITDMLEEEVLQPLLVTTSAVTLASETVRMILKI 510 (517)
T ss_pred CCccchhhccceEcHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999997
No 22
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.6e-72 Score=596.32 Aligned_cols=382 Identities=19% Similarity=0.209 Sum_probs=335.5
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|++.||+||++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 65 G~tIlk~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 138 (526)
T cd03339 65 GATILEKMDVDHQIAKLL------VELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEH 138 (526)
T ss_pred HHHHHHHhcccCHHHHHH------HHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC----CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccc-------ccceee--cCCcccceeEEEe
Q 013203 84 LDCQARKIT----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN-------DLITIF--DRKALYNELNFVK 144 (447)
Q Consensus 84 L~~~~~~v~----~~~~l~~va~ts~~~------~~~l~~li~~A~~~vg~~-------~~I~v~--~g~~~~d~~~~~~ 144 (447)
|+++++|++ +.+.|.++|++|+++ .+.|++++++|+..+.+. ..|+++ +|+++. ++++++
T Consensus 139 L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~-dS~~v~ 217 (526)
T cd03339 139 LEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLE-DTKLVK 217 (526)
T ss_pred HHHhccccCCCcccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHH-Hcceee
Confidence 999999885 467899999999874 357899999999887431 134554 788886 589999
Q ss_pred eEEEeecccCcccccccccceeeecCcEEEEeccc-------------cCCHHH-----------HHHHHHHHHhcCCCE
Q 013203 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNV-----------IRQASLPCMMQGQSL 200 (447)
Q Consensus 145 G~~~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~-------------i~~~~~-----------~~~~le~i~~~~~~l 200 (447)
|++|+++|.+|+|++ .++||+|++++++ ++++++ +.++++++.+.|+||
T Consensus 218 Givi~~~~~~~~m~~-------~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~l 290 (526)
T cd03339 218 GIVIDKDFSHPQMPK-------EVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANL 290 (526)
T ss_pred eEEEecccCCCCCCc-------eecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 999999999999965 3456666666532 556655 667899999999999
Q ss_pred EEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEE--
Q 013203 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA-- 278 (447)
Q Consensus 201 vii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i-- 278 (447)
||++++|++.++++|..|+ |.+||++ ++++|+|||++|||+++++ ++++++++||+|+.|+.
T Consensus 291 vi~~~~I~~~al~~L~~~~------I~av~~v-----~~~~LerIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ 354 (526)
T cd03339 291 VICQWGFDDEANHLLLQNG------LPAVRWV-----GGVEIELIAIATGGRIVPR-----FEDLSPEKLGKAGLVREIS 354 (526)
T ss_pred EEeCCCCCHHHHHHHHHCC------CEEEEeC-----CHHHHHHHHHHhCCEEecc-----hhhCChhhcccCceEEEEE
Confidence 9999999999999998764 6799975 3456999999999999996 88999999999999873
Q ss_pred -e--cceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHH
Q 013203 279 -T--MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (447)
Q Consensus 279 -~--~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a 355 (447)
+ +++++|+++|+++ +.|||+|||+|+.+++|+||+++||+|++|++
T Consensus 355 ig~~~~~~~~i~g~~~~-------------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~ 403 (526)
T cd03339 355 FGTTKDKMLVIEGCPNS-------------------------------KAVTIFIRGGNKMIIEEAKRSLHDALCVVRNL 403 (526)
T ss_pred ecCCCcEEEEEECCCCC-------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3 4688999998865 46999999999999999999999999999999
Q ss_pred HhcC-CcCChhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHH--------------------Hhh--h--cCCCCeeEe
Q 013203 356 KEEG-IVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNAL--------------------KLL--E--QDSSDLGYN 409 (447)
Q Consensus 356 ~~~g-vVpGGGa~e~~~s~~L~~~~~-~~~~~~~~i~~~a~AL--------------------kl~--~--~~~~~~G~d 409 (447)
+++| +|||||++|+++|..|++++. .++++|+++++|++|| +++ | .++.++|||
T Consensus 404 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 483 (526)
T cd03339 404 IRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGID 483 (526)
T ss_pred hhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeee
Confidence 9997 999999999999999999866 4889999999999999 332 2 224579999
Q ss_pred CCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 410 PARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 410 ~~~~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
+.+|++.||++.|||||+.||+++|+.|+++|++||+|
T Consensus 484 ~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~i 521 (526)
T cd03339 484 CLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKI 521 (526)
T ss_pred cCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999997
No 23
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9e-72 Score=593.01 Aligned_cols=385 Identities=15% Similarity=0.160 Sum_probs=343.7
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|+++||+||++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIlk~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 131 (522)
T cd03340 58 GATILKLLDIVHPAAKTL------VDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEK 131 (522)
T ss_pred HHHHHHHccccCHHHHHH------HHHHHHhHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC------HHHHHHHHHHhcC------CChhHHHHHHHHHHhhcccc---cceee--cCCcccceeEEEeeE
Q 013203 84 LDCQARKITT------FEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND---LITIF--DRKALYNELNFVKGM 146 (447)
Q Consensus 84 L~~~~~~v~~------~~~l~~va~ts~~------~~~~l~~li~~A~~~vg~~~---~I~v~--~g~~~~d~~~~~~G~ 146 (447)
|+++++|+++ .+.|.++|+++++ ++++|++++++|+.++++++ .|++. +|++.. ++++++|+
T Consensus 132 L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~-ds~lv~Gi 210 (522)
T cd03340 132 IKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLE-DSQLVNGV 210 (522)
T ss_pred HHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChh-hceeeeeE
Confidence 9999998864 4569999999876 46889999999999998765 45554 788885 58999999
Q ss_pred EEeecccCcccccccccceeeecCcEEEEecccc-------------CCHHH-----------HHHHHHHHHhcCCCEEE
Q 013203 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SNSNV-----------IRQASLPCMMQGQSLLV 202 (447)
Q Consensus 147 ~~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i-------------~~~~~-----------~~~~le~i~~~~~~lvi 202 (447)
+|+++|.+|+|.+.|+ .++||+|++++.++ +++.+ +.+.++.+.+.|.++|+
T Consensus 211 v~~k~~~~~~~~~~~~----~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl 286 (522)
T cd03340 211 AFKKTFSYAGFEQQPK----KFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVL 286 (522)
T ss_pred EEecccCccccccCCc----cccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999866554 68999999999873 44443 45678888999999999
Q ss_pred EecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEE---Ee
Q 013203 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (447)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~---i~ 279 (447)
++++|++.++++|..+ +|+++++ +++++|+|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 287 ~~~~i~d~a~~~l~~~------~I~~~~~-----v~~~~l~rIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ig 350 (522)
T cd03340 287 SKLPIGDLATQYFADR------DIFCAGR-----VPEEDLKRVAQATGGSIQTT-----VSNITDDVLGTCGLFEERQVG 350 (522)
T ss_pred eCCCCcHHHHHHHHHC------CcEEEEe-----CCHHHHHHHHHHHCCEEeec-----cccCCccccccceEEEEEEEC
Confidence 9999999999988875 4778875 45678999999999999996 8899999999999997 67
Q ss_pred cceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013203 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (447)
Q Consensus 280 ~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~g 359 (447)
++++++|.+|..+ +.+||++||+|+.+++|.||+++||++++|+++++|
T Consensus 351 ~~~~~~~~~~~~~-------------------------------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~ 399 (522)
T cd03340 351 GERYNIFTGCPKA-------------------------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKND 399 (522)
T ss_pred CEEEEEEECCCCC-------------------------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8899999998765 368999999999999999999999999999999996
Q ss_pred -CcCChhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHH--------------------Hhh--h-cCC-CCeeEeCCCC
Q 013203 360 -IVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNAL--------------------KLL--E-QDS-SDLGYNPARG 413 (447)
Q Consensus 360 -vVpGGGa~e~~~s~~L~~~~~-~~~~~~~~i~~~a~AL--------------------kl~--~-~~~-~~~G~d~~~~ 413 (447)
+|||||++|+++|..|++++. .++++++++++|++|| +++ | .++ .++|||+.+|
T Consensus 400 ~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g 479 (522)
T cd03340 400 SVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNE 479 (522)
T ss_pred CEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCC
Confidence 999999999999999999866 4899999999999999 333 2 234 5799999999
Q ss_pred ccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 414 NYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 414 ~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
++.||++.|||||+.||+++++.|+++|++||+|
T Consensus 480 ~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~i 513 (522)
T cd03340 480 GIADNFEAFVWEPSLVKINALTAATEAACLILSV 513 (522)
T ss_pred cccchhhcCceEcHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999986
No 24
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.7e-72 Score=594.59 Aligned_cols=382 Identities=19% Similarity=0.202 Sum_probs=334.0
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|+++||+||++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 69 G~tIlk~l~~~hP~akll------~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 142 (532)
T TIGR02343 69 GATILSQMDVDNPIAKLM------VELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEH 142 (532)
T ss_pred HHHHHHHccCCCHHHHHH------HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC----CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccc--c-----cceee--cCCcccceeEEEe
Q 013203 84 LDCQARKIT----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN--D-----LITIF--DRKALYNELNFVK 144 (447)
Q Consensus 84 L~~~~~~v~----~~~~l~~va~ts~~~------~~~l~~li~~A~~~vg~~--~-----~I~v~--~g~~~~d~~~~~~ 144 (447)
|+++++|++ +.+.|.++|++++++ .+.|++++++|+..+.+. + .|++. +|+++.| +++++
T Consensus 143 L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~d-s~~v~ 221 (532)
T TIGR02343 143 LEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLED-TKLIK 221 (532)
T ss_pred HHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCccc-ceeEe
Confidence 999999875 257799999998874 346888999999887431 1 24544 7888865 69999
Q ss_pred eEEEeecccCcccccccccceeeecCcEEEEecc-----------c--cCCHHHH-----------HHHHHHHHhcCCCE
Q 013203 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT-----------K--ISNSNVI-----------RQASLPCMMQGQSL 200 (447)
Q Consensus 145 G~~~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~-----------~--i~~~~~~-----------~~~le~i~~~~~~l 200 (447)
|++|+++|.+|+|++ .++||+|+++++ + +++++++ .++++++++.|+||
T Consensus 222 Gi~i~~~~~~~~m~~-------~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~l 294 (532)
T TIGR02343 222 GIIIDKDFSHPQMPK-------EVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANI 294 (532)
T ss_pred eEEEecCcCCCCCCe-------eecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 999999999999865 345666666653 3 5667665 77899999999999
Q ss_pred EEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEE---
Q 013203 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI--- 277 (447)
Q Consensus 201 vii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~--- 277 (447)
||++++|++.++++|..|+ +.+||+++ +++|+|||++|||+++++ ++++++++||+|++|+
T Consensus 295 vi~~~~I~~~al~~L~~~~------i~~v~~~~-----~~~l~~Ia~~tGa~~i~~-----l~~~~~~~LG~a~~v~~~~ 358 (532)
T TIGR02343 295 VICQWGFDDEANHLLLQND------LPAVRWVG-----GHELELIAIATGGRIVPR-----FEELSEDKLGKAGLVREIS 358 (532)
T ss_pred EEeCCCccHHHHHHHHHCC------cEEEEcCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCcccceEEEEE
Confidence 9999999999999999874 67899653 456999999999999996 8999999999999987
Q ss_pred Eec--ceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHH
Q 013203 278 ATM--DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (447)
Q Consensus 278 i~~--~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a 355 (447)
++. ++++++++|+++ ++|||+|||+|+.+++|+||+++||++++|++
T Consensus 359 ig~~~~~~~~i~~~~~~-------------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~ 407 (532)
T TIGR02343 359 FGTTKDRMLVIEQCKNS-------------------------------KAVTIFIRGGNKMIIEEAKRSIHDALCVVRNL 407 (532)
T ss_pred ecCCcceEEEEECCCCC-------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333 578999999876 36899999999999999999999999999999
Q ss_pred Hhc-CCcCChhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHH--------------------Hhh--hc-C-CCCeeEe
Q 013203 356 KEE-GIVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNAL--------------------KLL--EQ-D-SSDLGYN 409 (447)
Q Consensus 356 ~~~-gvVpGGGa~e~~~s~~L~~~~~-~~~~~~~~i~~~a~AL--------------------kl~--~~-~-~~~~G~d 409 (447)
+++ ++|||||++|+++|+.|++++. .++++|+++++|++|| +++ |. + +.++|||
T Consensus 408 i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 487 (532)
T TIGR02343 408 IKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVD 487 (532)
T ss_pred HhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCee
Confidence 998 5999999999999999999876 4889999999999999 332 21 2 4578999
Q ss_pred CCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 410 PARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 410 ~~~~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
+.+|+++||++.|||||+.||+++|+.|+++|++||+|
T Consensus 488 ~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~i 525 (532)
T TIGR02343 488 CLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKI 525 (532)
T ss_pred CCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999986
No 25
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.8e-71 Score=590.17 Aligned_cols=385 Identities=15% Similarity=0.142 Sum_probs=340.4
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|++.||+|+++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 59 G~TIlk~i~~~hP~a~ll------~~~a~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 132 (522)
T TIGR02345 59 GATILKLLDIVHPAAKTL------VDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEK 132 (522)
T ss_pred HHHHHHHhcccChHHHHH------HHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 8999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC-----CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhcccc----cceee--cCCcccceeEEEeeE
Q 013203 84 LDCQARKIT-----TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND----LITIF--DRKALYNELNFVKGM 146 (447)
Q Consensus 84 L~~~~~~v~-----~~~~l~~va~ts~~------~~~~l~~li~~A~~~vg~~~----~I~v~--~g~~~~d~~~~~~G~ 146 (447)
|+++++|++ +.+.+.++|++|++ ++++|++++++|+.++++++ .|.+. +|+++.| +++++|+
T Consensus 133 L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~d-s~~v~Gi 211 (522)
T TIGR02345 133 LKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQD-SVLVNGV 211 (522)
T ss_pred HHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHh-cceecce
Confidence 999999987 44789999999976 47899999999999998652 23332 7888865 7899999
Q ss_pred EEeecccCcccccccccceeeecCcEEEEeccccC-------------CHHH-----------HHHHHHHHHhcCCCEEE
Q 013203 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS-------------NSNV-----------IRQASLPCMMQGQSLLV 202 (447)
Q Consensus 147 ~~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~-------------~~~~-----------~~~~le~i~~~~~~lvi 202 (447)
+|+++|.+|||.+.|+ .++||+|+++|++++ ++++ +.+.++++.+.|.++++
T Consensus 212 v~~~~~~~~~~~~~~~----~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~ 287 (522)
T TIGR02345 212 AFKKTFSYAGFEQQPK----KFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVL 287 (522)
T ss_pred EEecccCccccccCCc----eeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9999999999876554 699999999998753 3333 23556778888999999
Q ss_pred EecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEE---e
Q 013203 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---T 279 (447)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i---~ 279 (447)
++++|++.++++|..+ +|+++++. .+++++++|++|||+++++ ++++++++||+|+.|+. +
T Consensus 288 ~~~~i~d~~~~~L~~~------~I~~~~~v-----~~~dl~ria~~tga~ii~~-----~~~l~~~~LG~~~~ie~~~~~ 351 (522)
T TIGR02345 288 SKLPIGDLATQYFADH------NIFCAGRV-----SDEDLKRVVKACGGSIQST-----TSDLEADVLGTCALFEERQIG 351 (522)
T ss_pred eCCCccHHHHHHHHHC------CcEEEecC-----CHHHHHHHHHHhCCeEEcc-----hhhCChhhccCCceEEEEEEC
Confidence 9999999999988874 57898864 4567999999999999996 78899999999999874 5
Q ss_pred cceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhc-
Q 013203 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE- 358 (447)
Q Consensus 280 ~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~- 358 (447)
++++++|.||+++ ++|||+|||+|+.+++|+||+++||+|++|+++++
T Consensus 352 ~~r~~~~~g~~~~-------------------------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~ 400 (522)
T TIGR02345 352 SERYNYFTGCPHA-------------------------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKAR 400 (522)
T ss_pred CeEEEEEEcCCCC-------------------------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7789999998665 36999999999999999999999999999999998
Q ss_pred CCcCChhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHH--------------------Hhh--h-cCCCCeeEeCCCCc
Q 013203 359 GIVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNAL--------------------KLL--E-QDSSDLGYNPARGN 414 (447)
Q Consensus 359 gvVpGGGa~e~~~s~~L~~~~~-~~~~~~~~i~~~a~AL--------------------kl~--~-~~~~~~G~d~~~~~ 414 (447)
|+|||||++|++++..|++++. .++++++++++|++|| +++ | .++.++|||+.+|+
T Consensus 401 ~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~ 480 (522)
T TIGR02345 401 KIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTED 480 (522)
T ss_pred CEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCc
Confidence 6999999999999999999865 4889999999999999 333 2 24557999999999
Q ss_pred cccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 415 YVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 415 ~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
+.||++.|||||+.||+++|++|+++|++||+|
T Consensus 481 i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 513 (522)
T TIGR02345 481 IGDNFENFVWEPLLVKKNALKAAFEAACTILSI 513 (522)
T ss_pred ccchhhcCceEcHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999986
No 26
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.7e-71 Score=589.71 Aligned_cols=382 Identities=13% Similarity=0.145 Sum_probs=337.7
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|++.||+|+++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIl~~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 131 (525)
T TIGR02344 58 GNAILREIDVAHPAAKSM------IELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSV 131 (525)
T ss_pred HHHHHHhccCCCHHHHHH------HHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcccc-----------cceee--cCCcccceeEE
Q 013203 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEND-----------LITIF--DRKALYNELNF 142 (447)
Q Consensus 84 L~~~~~~v~--~~~~l~~va~ts~~~------~~~l~~li~~A~~~vg~~~-----------~I~v~--~g~~~~d~~~~ 142 (447)
|+++++|++ +.+.+.++|+++.++ ++.|++++++|+..+++++ .|+++ +|+++.| +++
T Consensus 132 L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~d-S~l 210 (525)
T TIGR02344 132 LEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIED-SCV 210 (525)
T ss_pred HHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHh-cCc
Confidence 999999986 567799999877553 5789999999999998653 14555 5999865 899
Q ss_pred EeeEEEeecccCcccccccccceeeecCcEEEEeccccCC-------------HHHHHHHHH-----------HHHhcCC
Q 013203 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN-------------SNVIRQASL-----------PCMMQGQ 198 (447)
Q Consensus 143 ~~G~~~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~-------------~~~~~~~le-----------~i~~~~~ 198 (447)
++|+.|++++.++.| +.+++||+|++++++++. ++++.++++ ++.+.|.
T Consensus 211 v~Gvvi~k~~~~~~m-------~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~ 283 (525)
T TIGR02344 211 LKGVMINKDVTHPKM-------RRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKP 283 (525)
T ss_pred ccceEEecccCCCCC-------ccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999877755 347899999999988744 466665544 7888898
Q ss_pred CEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCcee-eeEEE
Q 013203 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVI 277 (447)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~-a~~v~ 277 (447)
+||+++++|++.++++|.. .+|+++++ +++++|+|||++|||+++++ ++++++++||+ |+.|+
T Consensus 284 ~vIi~~k~I~dla~~~l~~------~~I~av~~-----v~~~~LerIa~~tGa~ii~~-----l~~l~~~~lG~~~~~v~ 347 (525)
T TIGR02344 284 DLVITEKGVSDLAQHYLLK------ANISAIRR-----VRKTDNNRIARACGATIVNR-----PEELRESDVGTGCGLFE 347 (525)
T ss_pred CEEEeCCCccHHHHHHHhH------CCceEEec-----CCHHHHHHHHHHhCCeEecc-----hhhCCHhhcCCcCCEEE
Confidence 8999999999999998876 35889884 67788999999999999996 88899999999 99887
Q ss_pred E---ecceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHH
Q 013203 278 A---TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (447)
Q Consensus 278 i---~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~ 354 (447)
+ ++++|++|++|+++ ..|||+|||+|+.+++|+||+++||++++++
T Consensus 348 ~~~ig~~~~~~~~g~~~~-------------------------------~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~ 396 (525)
T TIGR02344 348 VKKIGDEYFTFFTECKDP-------------------------------KACTILLRGASKDVLNEIERNLQDAMAVARN 396 (525)
T ss_pred EEEECCeEEEEEEcCCCC-------------------------------CEEEEEEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence 6 66889999998776 3699999999999999999999999999999
Q ss_pred HHhc-CCcCChhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHH--------------------Hhh--h-cC-CCCeeE
Q 013203 355 AKEE-GIVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNAL--------------------KLL--E-QD-SSDLGY 408 (447)
Q Consensus 355 a~~~-gvVpGGGa~e~~~s~~L~~~~~-~~~~~~~~i~~~a~AL--------------------kl~--~-~~-~~~~G~ 408 (447)
++++ ++|||||++|+++|..|++++. .++++|+++++|++|| +++ | ++ +.++||
T Consensus 397 ~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gi 476 (525)
T TIGR02344 397 VLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGI 476 (525)
T ss_pred HHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeE
Confidence 9998 5999999999999999999866 4889999999999999 332 2 23 457999
Q ss_pred eCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 409 NPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 409 d~~~~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
|+.+|++.||++.|||||+.||+++++.|+++|++||+|
T Consensus 477 d~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~i 515 (525)
T TIGR02344 477 DGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRI 515 (525)
T ss_pred ECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999986
No 27
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-71 Score=592.20 Aligned_cols=381 Identities=14% Similarity=0.151 Sum_probs=330.1
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|++.||+|+++ +++|++||+++||||||+||||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 60 G~tIlk~i~~~hP~akll------~e~a~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 133 (531)
T TIGR02346 60 AATILRELEVQHPAAKLL------VMASEMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEV 133 (531)
T ss_pred HHHHHHhccccCHHHHHH------HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcccc-ccCC---HHHHHHHHHHhcC-----CChhHHHHHHHHHHhhcccc--cceee-------cCCcccceeEEEee
Q 013203 84 LDCQAR-KITT---FEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEND--LITIF-------DRKALYNELNFVKG 145 (447)
Q Consensus 84 L~~~~~-~v~~---~~~l~~va~ts~~-----~~~~l~~li~~A~~~vg~~~--~I~v~-------~g~~~~d~~~~~~G 145 (447)
|++++. |+++ .+.+.++++++.+ +++.|++++++|+.++++++ .+.++ .|+++. ++++++|
T Consensus 134 L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~-ds~li~G 212 (531)
T TIGR02346 134 LEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSIS-NSEVLKG 212 (531)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChh-hceeEee
Confidence 999986 7643 6779999877664 37899999999999998755 33333 688875 7999999
Q ss_pred EEEeecccCcccccccccceeeecCcEEEEecccc-------------CCH-----------HHHHHHHHHHHhcCCCEE
Q 013203 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SNS-----------NVIRQASLPCMMQGQSLL 201 (447)
Q Consensus 146 ~~~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i-------------~~~-----------~~~~~~le~i~~~~~~lv 201 (447)
++|++++.+ + | ..++||+|++++.++ +++ +++.++++++.+.|+|||
T Consensus 213 i~~~~~~~~--~---~----k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lv 283 (531)
T TIGR02346 213 MVFNREAEG--S---V----KRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVI 283 (531)
T ss_pred eEEeccCCC--C---c----eeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 999999321 1 1 246677777766542 222 346678999999999999
Q ss_pred EEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEE---
Q 013203 202 VVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA--- 278 (447)
Q Consensus 202 ii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i--- 278 (447)
|++++|++.++++|.. .+|++||+|+++ +|+|||.+|||+++++ ++++++++||+|++|++
T Consensus 284 i~~~~I~d~~~~~l~~------~~I~av~~~~~~-----~l~~Ia~~tGa~ii~~-----l~~~~~~~LG~a~~v~~~~i 347 (531)
T TIGR02346 284 VTGGSVGDMALHYCEK------YNIMVLKIPSKF-----ELRRLCKTVGATPLAR-----LGAPQPEEIGYVDSVYVSEI 347 (531)
T ss_pred EECCCcCHHHHHHHHH------CCcEEEecCCHH-----HHHHHHHHHCCEEecc-----cccCCHhHccccceEEEEEE
Confidence 9999999999997774 468999998755 4899999999999986 78899999999999974
Q ss_pred ecceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhc
Q 013203 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (447)
Q Consensus 279 ~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~ 358 (447)
++++++++.++.. .+++|||+|||+|+.+++|+||+++||+|++|+++++
T Consensus 348 g~~~~~~i~~~~~------------------------------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~ 397 (531)
T TIGR02346 348 GGQKVTVFKQENG------------------------------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKD 397 (531)
T ss_pred CCEEEEEEEccCC------------------------------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5678999988652 2468999999999999999999999999999999999
Q ss_pred C-CcCChhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHH--------------------Hhhh---cCCCCeeEeCCCC
Q 013203 359 G-IVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNAL--------------------KLLE---QDSSDLGYNPARG 413 (447)
Q Consensus 359 g-vVpGGGa~e~~~s~~L~~~~~-~~~~~~~~i~~~a~AL--------------------kl~~---~~~~~~G~d~~~~ 413 (447)
| +|||||++|+++|..|++++. .++++++++++|++|| ++++ .++.++|||+.+|
T Consensus 398 ~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~ 477 (531)
T TIGR02346 398 NRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAE 477 (531)
T ss_pred CCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCC
Confidence 9 999999999999999999866 4889999999999999 3332 2455789999999
Q ss_pred c--cccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 414 N--YVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 414 ~--~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
+ +.||++.|||||+.||+++|++|+++|++||+|
T Consensus 478 ~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 513 (531)
T TIGR02346 478 SDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRV 513 (531)
T ss_pred CccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhh
Confidence 9 599999999999999999999999999999987
No 28
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1e-70 Score=583.73 Aligned_cols=381 Identities=18% Similarity=0.217 Sum_probs=335.4
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|++.||+||++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 57 G~tIlk~l~~~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 130 (517)
T cd03336 57 GATILKSIGVDNPAAKVL------VDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREA 130 (517)
T ss_pred HHHHHHHccCcChHHHHH------HHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC-----CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccc---ccceee--cCCcccceeEEEeeEE
Q 013203 84 LDCQARKIT-----TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (447)
Q Consensus 84 L~~~~~~v~-----~~~~l~~va~ts~~------~~~~l~~li~~A~~~vg~~---~~I~v~--~g~~~~d~~~~~~G~~ 147 (447)
|+++++|++ +.+.|.++|+|+.+ +++.|++++++|+.++++. ..|++. +|+++. ++.+++|++
T Consensus 131 L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~-ds~l~~G~v 209 (517)
T cd03336 131 LLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLK-DSYLDEGFL 209 (517)
T ss_pred HHHhccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCcc-ceEEEeeEE
Confidence 999999984 24679999986654 3678999999999998632 235554 698886 589999999
Q ss_pred EeecccCcccccccccceeeecCcEEEEeccccC--------------CHHHHH-----------HHHHHHHhcCCCEEE
Q 013203 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS--------------NSNVIR-----------QASLPCMMQGQSLLV 202 (447)
Q Consensus 148 ~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~--------------~~~~~~-----------~~le~i~~~~~~lvi 202 (447)
+++++.++ + +..++||+|+++|++++ +++++. +.++.+.+.|.++++
T Consensus 210 ~~~~~~~~-~-------~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~ 281 (517)
T cd03336 210 LDKKIGVN-Q-------PKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFI 281 (517)
T ss_pred EecccCCC-C-------CCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 99986543 2 34799999999998754 555542 347778899999999
Q ss_pred EecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEE---Ee
Q 013203 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (447)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~---i~ 279 (447)
+++.|++.++++|..+ +|++||+|++ ++|+|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 282 ~~~~I~~~~~~~l~~~------~I~av~~v~~-----~~L~rIa~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig 345 (517)
T cd03336 282 NRQLIYNYPEQLFADA------GIMAIEHADF-----DGVERLALVTGGEIAST-----FDHPELVKLGTCKLIEEIMIG 345 (517)
T ss_pred eCCCccHHHHHHHHHC------CcEEEecCCH-----HHHHHHHHHhCCEEecc-----cCCCCcccccccceEEEEEEC
Confidence 9999999999988864 5899998864 35999999999999996 8899999999999986 46
Q ss_pred cceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013203 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (447)
Q Consensus 280 ~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~g 359 (447)
++++++|.+|+++ +.|||+|||+|+.+++|.||+++||+|++|+++++|
T Consensus 346 ~~~~~~~~~~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~ 394 (517)
T cd03336 346 EDKLIRFSGVAAG-------------------------------EACTIVLRGASQQILDEAERSLHDALCVLAQTVKDT 394 (517)
T ss_pred CeEEEEEEccCCC-------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7899999998754 579999999999999999999999999999999997
Q ss_pred -CcCChhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHH--------------------Hhh--h-cCCCCeeEeCCCCc
Q 013203 360 -IVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNAL--------------------KLL--E-QDSSDLGYNPARGN 414 (447)
Q Consensus 360 -vVpGGGa~e~~~s~~L~~~~~-~~~~~~~~i~~~a~AL--------------------kl~--~-~~~~~~G~d~~~~~ 414 (447)
+|||||++|+++|+.|++++. .++++|+++++|++|| +++ | .++.++|||+.+|+
T Consensus 395 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~ 474 (517)
T cd03336 395 RVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGT 474 (517)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCC
Confidence 999999999999999999876 4899999999999999 332 2 35667999999999
Q ss_pred cccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 415 YVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 415 ~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
+.||++.|||||+.||+++|+.|+++|++||+|
T Consensus 475 ~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 507 (517)
T cd03336 475 VGDMKELGITESFKVKRQVLLSASEAAEMILRV 507 (517)
T ss_pred ccchhhcCceecHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999986
No 29
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=1.6e-70 Score=583.86 Aligned_cols=381 Identities=18% Similarity=0.211 Sum_probs=335.4
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|++.||+||++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 69 G~TIlk~i~~~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~ 142 (533)
T PTZ00212 69 GATILKSVWLDNPAAKIL------VDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKA 142 (533)
T ss_pred HHHHHHhccCcCHHHHHH------HHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC-----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccc---ccceee--cCCcccceeEEEeeEE
Q 013203 84 LDCQARKITT-----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (447)
Q Consensus 84 L~~~~~~v~~-----~~~l~~va~ts~~~------~~~l~~li~~A~~~vg~~---~~I~v~--~g~~~~d~~~~~~G~~ 147 (447)
|+++++|+++ .+.|.++|+|+.++ .+.|++++++|+..+.+. ..|++. +|+++. ++.+++|++
T Consensus 143 L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~-ds~lv~G~v 221 (533)
T PTZ00212 143 LEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLR-DSYLEDGFI 221 (533)
T ss_pred HHHhCcCCCccchhhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcc-ccEEEEeEE
Confidence 9999999864 46799999866653 467999999999888532 134443 799986 589999999
Q ss_pred EeecccCcccccccccceeeecCcEEEEecccc--------------CCHHHHH-----------HHHHHHHhcCCCEEE
Q 013203 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI--------------SNSNVIR-----------QASLPCMMQGQSLLV 202 (447)
Q Consensus 148 ~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i--------------~~~~~~~-----------~~le~i~~~~~~lvi 202 (447)
+++++.++ + +..++||+|+++|+++ ++++++. +.++.+.+.|.++++
T Consensus 222 ~~~~~~~~-~-------~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv 293 (533)
T PTZ00212 222 LEKKIGVG-Q-------PKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFI 293 (533)
T ss_pred EecccCCC-C-------CccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 99986543 2 3479999999999986 5655543 346778899999999
Q ss_pred EecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEE---Ee
Q 013203 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (447)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~---i~ 279 (447)
++++|++.++++|..+ +|++||++ ++.+++|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 294 ~~~~I~d~a~~~L~~~------~I~avr~v-----~~~~l~rIa~~tGa~iis~-----l~~~~~~~LG~~~~v~~~~ig 357 (533)
T PTZ00212 294 NRQLIYNYPEQLFAEA------GIMAIEHA-----DFDGMERLAAALGAEIVST-----FDTPEKVKLGHCDLIEEIMIG 357 (533)
T ss_pred eCCCccHHHHHHHHHC------CCEEEecC-----CHHHHHHHHHHhCCEEeec-----CCCCCHHHccCCceEEEEEEC
Confidence 9999999999988864 58999964 3467999999999999996 8889999999999998 78
Q ss_pred cceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013203 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (447)
Q Consensus 280 ~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~g 359 (447)
++++++|++|..+ ++|||+|||+|+.+++|+||+++||+|++|+++++|
T Consensus 358 ~~~~~~~~~~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~ 406 (533)
T PTZ00212 358 EDKLIRFSGCAKG-------------------------------EACTIVLRGASTHILDEAERSLHDALCVLSQTVKDT 406 (533)
T ss_pred CeEEEEEEccCCC-------------------------------CEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 8899999998654 579999999999999999999999999999999997
Q ss_pred -CcCChhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHH--------------------Hhh--h-cCCCCeeEeCCCCc
Q 013203 360 -IVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNAL--------------------KLL--E-QDSSDLGYNPARGN 414 (447)
Q Consensus 360 -vVpGGGa~e~~~s~~L~~~~~-~~~~~~~~i~~~a~AL--------------------kl~--~-~~~~~~G~d~~~~~ 414 (447)
+|||||++|+++|..|++++. .++++|+++++|++|| +++ | +++.++|||+.+|+
T Consensus 407 ~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~ 486 (533)
T PTZ00212 407 RVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGT 486 (533)
T ss_pred CEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCc
Confidence 999999999999999999976 4899999999999999 333 2 45567999999999
Q ss_pred cccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 415 YVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 415 ~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
+.||++.|||||+.||+++|+.|+++|++||+|
T Consensus 487 i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~i 519 (533)
T PTZ00212 487 VGDMKELGITESYKVKLSQLCSATEAAEMILRV 519 (533)
T ss_pred ccchhhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999986
No 30
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3e-70 Score=575.39 Aligned_cols=365 Identities=13% Similarity=0.162 Sum_probs=326.9
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..+|||+|+++||+|+++ +++|++||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIlk~l~~~hP~a~ll------~~~a~~q~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 131 (480)
T cd03337 58 GNAILREIDVAHPAAKSM------IELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKI 131 (480)
T ss_pred HHHHHHhccccChHHHHH------HHHHHhHHHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccc--c---------cceee--cCCcccceeEE
Q 013203 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN--D---------LITIF--DRKALYNELNF 142 (447)
Q Consensus 84 L~~~~~~v~--~~~~l~~va~ts~~~------~~~l~~li~~A~~~vg~~--~---------~I~v~--~g~~~~d~~~~ 142 (447)
|+++++|++ +.+.+.++++++.++ ++.|++++++|+..++++ + .|+++ +|++..| +++
T Consensus 132 L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~d-s~l 210 (480)
T cd03337 132 LEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIED-SRV 210 (480)
T ss_pred HHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHh-ccc
Confidence 999999987 778899999998873 568999999999999754 2 14455 5888864 899
Q ss_pred EeeEEEeecccCcccccccccceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCC
Q 013203 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCT 222 (447)
Q Consensus 143 ~~G~~~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~ 222 (447)
++|++|++++.+|.| +.+++||+|++++++++. |||++++|++.++++|..|
T Consensus 211 i~Gvvi~k~~~~~~m-------~~~~~n~kIlll~~~Le~-----------------lvi~~k~I~d~al~~L~~~---- 262 (480)
T cd03337 211 LDGVMLNKDVTHPKM-------RRRIENPRIVLLDCPLEY-----------------LVITEKGVSDLAQHYLVKA---- 262 (480)
T ss_pred ccceEEeccCCCCCC-------CcEecCCCEEEEecCcce-----------------EEEeCCCccHHHHHHHHHC----
Confidence 999999999988865 347899999999998775 8999999999999999876
Q ss_pred CCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCcee-eeEEE---EecceEEEEeCCCChhhHHHH
Q 013203 223 TEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVI---ATMDNVVIIGGSGELVDIQER 298 (447)
Q Consensus 223 ~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~-a~~v~---i~~~~~~~i~g~~~~~~i~~r 298 (447)
+|++|++ +++++|+|||++|||+++++ ++++++++||+ |+.++ +++++++++++|+++
T Consensus 263 --~I~~v~~-----v~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~------ 324 (480)
T cd03337 263 --GITALRR-----VRKTDNNRIARACGATIVNR-----PEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP------ 324 (480)
T ss_pred --CcEEEEe-----CCHHHHHHHHHHHCCEEecc-----hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC------
Confidence 5899995 56788999999999999997 78899999999 55554 356788999998775
Q ss_pred HHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhc-CCcCChhHHHHHHHHHHHH
Q 013203 299 CEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDK 377 (447)
Q Consensus 299 ~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~-gvVpGGGa~e~~~s~~L~~ 377 (447)
+.|||+|||+|+.+++|.||+++||++++++++++ ++|||||++||++|..|++
T Consensus 325 -------------------------~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~ 379 (480)
T cd03337 325 -------------------------KACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSE 379 (480)
T ss_pred -------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999 5999999999999999999
Q ss_pred hcC-CCchhHHHHHHHHHHH--------------------Hhh--h-cC-CCCeeEeCCCCccccccccCcccccccHHH
Q 013203 378 LQT-TNSDQKIGVQIVQNAL--------------------KLL--E-QD-SSDLGYNPARGNYVDMFKCGDVDPLKHVPS 432 (447)
Q Consensus 378 ~~~-~~~~~~~~i~~~a~AL--------------------kl~--~-~~-~~~~G~d~~~~~~~dm~~~gI~Dp~~v~~~ 432 (447)
++. .++++|+++++|++|| +++ | ++ +.++|+|+.+|++.||++.|||||+.||++
T Consensus 380 ~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~ 459 (480)
T cd03337 380 KAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQ 459 (480)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHH
Confidence 876 4899999999999999 333 2 23 457999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 013203 433 EFAKATSMISLKNAI 447 (447)
Q Consensus 433 al~~A~~~A~~iL~i 447 (447)
+|++|+++|++||+|
T Consensus 460 ~l~~A~e~a~~iL~i 474 (480)
T cd03337 460 TYKTAIEAACMLLRI 474 (480)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999999997
No 31
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.4e-69 Score=574.65 Aligned_cols=381 Identities=17% Similarity=0.196 Sum_probs=332.7
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..||||+|++.||+||++ +++|++||+++||||||+++||++||++++++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIlk~l~i~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 131 (519)
T TIGR02341 58 GATILKSIGVDNPAAKVL------VDMSKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEA 131 (519)
T ss_pred HHHHHHHccCcChHHHHH------HHHHHHhHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC-----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccc---ccceee--cCCcccceeEEEeeEE
Q 013203 84 LDCQARKITT-----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (447)
Q Consensus 84 L~~~~~~v~~-----~~~l~~va~ts~~~------~~~l~~li~~A~~~vg~~---~~I~v~--~g~~~~d~~~~~~G~~ 147 (447)
|+++++|+++ .++|.++|+++.++ .+.|+++.++|+..+... ..|++. +|+++. ++.+++|++
T Consensus 132 L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~-~s~l~~G~v 210 (519)
T TIGR02341 132 LKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLN-DSYLDEGFL 210 (519)
T ss_pred HHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcc-cceEEeeEE
Confidence 9999999853 46799999988864 356888999999887431 236665 688885 689999999
Q ss_pred EeecccCcccccccccceeeecCcEEEEeccccCC--------------HHHHH-----------HHHHHHHhcCCCEEE
Q 013203 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN--------------SNVIR-----------QASLPCMMQGQSLLV 202 (447)
Q Consensus 148 ~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~--------------~~~~~-----------~~le~i~~~~~~lvi 202 (447)
+++++.++ + +..++||+|+++|++++. ++++. .+++.+.+.|.++++
T Consensus 211 ~~~~~~~~-~-------~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~ 282 (519)
T TIGR02341 211 LEKKIGVN-Q-------PKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFI 282 (519)
T ss_pred EeccCCCC-C-------ceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99986442 2 347899999999987642 33332 346778899999999
Q ss_pred EecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEE---Ee
Q 013203 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (447)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~---i~ 279 (447)
+++.|++.++++|..+ +|+++++|++ ++|+|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 283 ~~~~I~~~~~~~l~~~------~I~~v~~~~~-----~~l~~ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~ig 346 (519)
T TIGR02341 283 NRQLIYNYPEQLFADA------GVMAIEHADF-----EGIERLALVTGGEIVST-----FDHPELVKLGSCDLIEEIMIG 346 (519)
T ss_pred ECCcCCHHHHHHHHHC------CcEEEecCCH-----HHHHHHHHHhCCEEecc-----cccCCccccccCceEEEEEEC
Confidence 9999999999988764 5899999864 36999999999999996 8889999999999886 46
Q ss_pred cceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhc-
Q 013203 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE- 358 (447)
Q Consensus 280 ~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~- 358 (447)
+++++++.+|+++ ++|||+|||+|+.+++|+||+++||++++|+++++
T Consensus 347 ~~~~~~~~~~~~~-------------------------------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~ 395 (519)
T TIGR02341 347 EDKLLKFSGVKLG-------------------------------EACTIVLRGATQQILDESERSLHDALCVLSQTVKES 395 (519)
T ss_pred CEEEEEEEcCCCC-------------------------------CEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7899999998764 57999999999999999999999999999999998
Q ss_pred CCcCChhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHH--------------------Hhh--h-cCCCCeeEeCCCCc
Q 013203 359 GIVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNAL--------------------KLL--E-QDSSDLGYNPARGN 414 (447)
Q Consensus 359 gvVpGGGa~e~~~s~~L~~~~~-~~~~~~~~i~~~a~AL--------------------kl~--~-~~~~~~G~d~~~~~ 414 (447)
++|||||++|+++|..|++++. .++++|+++++|++|| +++ | .++.++|||+.+|+
T Consensus 396 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~ 475 (519)
T TIGR02341 396 RTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGE 475 (519)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCc
Confidence 5999999999999999999866 4899999999999999 332 2 24557899999999
Q ss_pred cccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 415 YVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 415 ~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
+.||++.|||||+.||+++++.|+++|++||+|
T Consensus 476 i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 508 (519)
T TIGR02341 476 IADMRKLGIIESYKVKRAVVSSAAEAAEVILRV 508 (519)
T ss_pred ccchhhccceEcHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999986
No 32
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2e-68 Score=560.44 Aligned_cols=365 Identities=26% Similarity=0.349 Sum_probs=330.0
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..+|||+|++.||+++++ ++++++||+++||||||+++|+++|++++.++++ |+||+.|++||+.|.+.++++
T Consensus 50 G~tIlk~i~~~hp~a~ll------~~~~~~~~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 123 (464)
T cd00309 50 GATILKEIEVEHPAAKLL------VEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEI 123 (464)
T ss_pred HHHHHHhccCcCHHHHHH------HHHHHHHHhHhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999977 8999999999999999999999999999999999 999999999999999999999
Q ss_pred Hhccccc--cCCHHHHHHHHHHhcC------CChhHHHHHHHHHHhhcc------cccceee--cCCcccceeEEEeeEE
Q 013203 84 LDCQARK--ITTFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWE------NDLITIF--DRKALYNELNFVKGMK 147 (447)
Q Consensus 84 L~~~~~~--v~~~~~l~~va~ts~~------~~~~l~~li~~A~~~vg~------~~~I~v~--~g~~~~d~~~~~~G~~ 147 (447)
|+++++| +.+.+++.++|+++++ +++.+++++++|+.++++ .+.|+|+ +|+++. ++++++|++
T Consensus 124 L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~-ds~li~Gi~ 202 (464)
T cd00309 124 LKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLE-DSELVVGMV 202 (464)
T ss_pred HHHhcCccCCCCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccCccccceEEEEecCCCCcc-cceeeeeEE
Confidence 9999998 5578899999999998 688899999999999987 5677776 677775 579999999
Q ss_pred EeecccCcccccccccceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceE
Q 013203 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVC 227 (447)
Q Consensus 148 ~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~ 227 (447)
|+++|.+|+| +..++||+|++++++++. |+++.++|++.++++|.. .+|+
T Consensus 203 ~~~~~~~~~m-------~~~~~n~~Ili~~~~Le~-----------------lIi~~~~I~~~al~~L~~------~~I~ 252 (464)
T cd00309 203 FDKGYLSPYM-------PKRLENAKILLLDCKLEY-----------------VVIAEKGIDDEALHYLAK------LGIM 252 (464)
T ss_pred EecCCCCCCC-------ceeecCceEEEEecCcce-----------------EEecCCCcCHHHHHHHHH------CCeE
Confidence 9999999998 347999999999999886 667777899999998887 4689
Q ss_pred EEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEE---ecceEEEEeCCCChhhHHHHHHHHHH
Q 013203 228 IIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---TMDNVVIIGGSGELVDIQERCEQLRS 304 (447)
Q Consensus 228 avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i---~~~~~~~i~g~~~~~~i~~r~~~l~~ 304 (447)
+|++ +++++|+|||++|||+++++ ++++++++||+|+.|++ +++++++|.+++.+
T Consensus 253 ~v~~-----~~~~~L~~Ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~------------ 310 (464)
T cd00309 253 AVRR-----VRKEDLERIAKATGATIVSR-----LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGG------------ 310 (464)
T ss_pred EEEe-----CCHHHHHHHHHHhCCEEecc-----cccCCcccCccccEEEEEEEcCeeEEEEEecCCC------------
Confidence 9996 56788999999999999996 78889999999999975 45678888887653
Q ss_pred HhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhc-CCcCChhHHHHHHHHHHHHhcC-CC
Q 013203 305 TIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKLQT-TN 382 (447)
Q Consensus 305 ~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~-gvVpGGGa~e~~~s~~L~~~~~-~~ 382 (447)
+.|||+|||+|+.+++|+||+++||++++|+++++ ++|||||++|+++|+.|++++. .+
T Consensus 311 -------------------~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~ 371 (464)
T cd00309 311 -------------------KVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLP 371 (464)
T ss_pred -------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccc
Confidence 57999999999999999999999999999999999 6999999999999999999877 48
Q ss_pred chhHHHHHHHHHHH--------------------Hhh--h-cCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHH
Q 013203 383 SDQKIGVQIVQNAL--------------------KLL--E-QDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATS 439 (447)
Q Consensus 383 ~~~~~~i~~~a~AL--------------------kl~--~-~~~~~~G~d~~~~~~~dm~~~gI~Dp~~v~~~al~~A~~ 439 (447)
+++++++++|++|| +++ | .+..++|+|..+|++.||++.|||||+.||+++++.|++
T Consensus 372 ~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e 451 (464)
T cd00309 372 GKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATE 451 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHH
Confidence 99999999999999 332 2 234478999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 013203 440 MISLKNAI 447 (447)
Q Consensus 440 ~A~~iL~i 447 (447)
+|++||+|
T Consensus 452 ~a~~iL~i 459 (464)
T cd00309 452 AASLILTI 459 (464)
T ss_pred HHHHHHhH
Confidence 99999986
No 33
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.9e-68 Score=560.70 Aligned_cols=367 Identities=17% Similarity=0.182 Sum_probs=323.5
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..+|||+|++.||+++++ +++|++||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 50 G~tIlk~l~~~hP~a~ll------~~~a~~~~~~~GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 123 (472)
T cd03341 50 AATILRELEVQHPAAKLL------VMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEI 123 (472)
T ss_pred HHHHHHhccccCHHHHHH------HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 8999999999999999999999999999999999 999999999999999999999
Q ss_pred Hhccccc-cC---CHHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccc--ccceee-------cCCcccceeEEEee
Q 013203 84 LDCQARK-IT---TFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEN--DLITIF-------DRKALYNELNFVKG 145 (447)
Q Consensus 84 L~~~~~~-v~---~~~~l~~va~ts~~-----~~~~l~~li~~A~~~vg~~--~~I~v~-------~g~~~~d~~~~~~G 145 (447)
|++++.+ +. +.+.+.++++++.+ +++.|++++++|+.+++++ |.+.++ +|++..| +++++|
T Consensus 124 L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~d-s~lv~G 202 (472)
T cd03341 124 LEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLED-SKVVRG 202 (472)
T ss_pred HHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCccc-ceEEee
Confidence 9999865 53 35668888877753 4678999999999999875 543332 7888865 799999
Q ss_pred EEEeecccCcccccccccceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCc
Q 013203 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEK 225 (447)
Q Consensus 146 ~~~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~ 225 (447)
++|++.+.+ +...++||+|++++++++. |+||||++++|++.++++|.. .+
T Consensus 203 iv~~~~~~~---------~~~~~~n~~Ili~~~~Le~--------------g~~lvi~~~~I~d~al~~l~~------~~ 253 (472)
T cd03341 203 MVFKREPEG---------SVKRVKKAKVAVFSCPFDI--------------GVNVIVAGGSVGDLALHYCNK------YG 253 (472)
T ss_pred EEEccccCC---------CceeccCCcEEEEeccccC--------------CCeEEEECCCCCHHHHHHHHH------CC
Confidence 999875321 2257899999999999886 899999999999999997664 46
Q ss_pred eEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEEe---cceEEEEeCCCChhhHHHHHHHH
Q 013203 226 VCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---MDNVVIIGGSGELVDIQERCEQL 302 (447)
Q Consensus 226 i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i~---~~~~~~i~g~~~~~~i~~r~~~l 302 (447)
|++||+|+ +++|+|||++|||+++++ ++++++++||+|++|++. ++++++|.+|++.
T Consensus 254 I~av~~~~-----~~~Le~Ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~---------- 313 (472)
T cd03341 254 IMVIKINS-----KFELRRLCRTVGATPLPR-----LGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKED---------- 313 (472)
T ss_pred eEEEEeCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCCCceEEEEEEECCeeEEEEEccCCC----------
Confidence 99999875 456999999999999996 788899999999999865 4889999988641
Q ss_pred HHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC-CcCChhHHHHHHHHHHHHhcC-
Q 013203 303 RSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQT- 380 (447)
Q Consensus 303 ~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~- 380 (447)
+++|||+|||+|+.+++|+||+++||++++|+++++| +|||||++|++++..|++++.
T Consensus 314 --------------------~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~ 373 (472)
T cd03341 314 --------------------SKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEK 373 (472)
T ss_pred --------------------CCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhc
Confidence 2579999999999999999999999999999999998 999999999999999999866
Q ss_pred CCchhHHHHHHHHHHH--------------------Hhh--h-cCCCCeeEeCCCC--ccccccccCcccccccHHHHHH
Q 013203 381 TNSDQKIGVQIVQNAL--------------------KLL--E-QDSSDLGYNPARG--NYVDMFKCGDVDPLKHVPSEFA 435 (447)
Q Consensus 381 ~~~~~~~~i~~~a~AL--------------------kl~--~-~~~~~~G~d~~~~--~~~dm~~~gI~Dp~~v~~~al~ 435 (447)
.++++++++++|++|| +++ | +++.++|||+.+| ++.||++.|||||+.||+++|+
T Consensus 374 ~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~ 453 (472)
T cd03341 374 TPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIK 453 (472)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHH
Confidence 4789999999999999 332 2 4456799999999 9999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 013203 436 KATSMISLKNAI 447 (447)
Q Consensus 436 ~A~~~A~~iL~i 447 (447)
+|+++|++||+|
T Consensus 454 ~A~e~a~~iL~i 465 (472)
T cd03341 454 LATEAAVTVLRV 465 (472)
T ss_pred HHHHHHHHHhhh
Confidence 999999999997
No 34
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-69 Score=524.60 Aligned_cols=384 Identities=15% Similarity=0.135 Sum_probs=342.7
Q ss_pred HHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHH
Q 013203 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (447)
Q Consensus 6 ~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~L 84 (447)
-||||.|++.||+||.| +++|++||.||||||||||+||+|+|+++..+++ |+||..|+++|++|...+++.|
T Consensus 63 ATIlKlldivhPaaktl------Vdia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki 136 (543)
T KOG0361|consen 63 ATILKLLDIVHPAAKTL------VDIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKI 136 (543)
T ss_pred HHHHHHHhhcChhHHHH------HHHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999988 6999999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC--C----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccc---ccceee--cCCcccceeEEEeeEE
Q 013203 85 DCQARKIT--T----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (447)
Q Consensus 85 ~~~~~~v~--~----~~~l~~va~ts~~~------~~~l~~li~~A~~~vg~~---~~I~v~--~g~~~~d~~~~~~G~~ 147 (447)
++++..++ + ++.|++.|.|++++ .++|+++++||+..++.+ ..|-|+ +||+++| |.+++|+.
T Consensus 137 ~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~d-S~lv~GVA 215 (543)
T KOG0361|consen 137 KELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMED-SLLVNGVA 215 (543)
T ss_pred HHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccch-hhhcccee
Confidence 99998775 2 35688999887753 678999999999998743 235454 8999975 78999999
Q ss_pred EeecccCcccccccccceeeecCcEEEEeccc-------------cCCHHHHH-----------HHHHHHHhcCCCEEEE
Q 013203 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIR-----------QASLPCMMQGQSLLVV 203 (447)
Q Consensus 148 ~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~-------------i~~~~~~~-----------~~le~i~~~~~~lvii 203 (447)
|.+.|.+..|...|+ .+.||+|+++|.+ ++++++++ +.|+++..+|+++|+.
T Consensus 216 FkKtFsYAGfEqqPK----k~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLS 291 (543)
T KOG0361|consen 216 FKKTFSYAGFEQQPK----KFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLS 291 (543)
T ss_pred eeehccccchhhCcc----ccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEe
Confidence 999999998866555 7999999999854 34555543 5688899999999998
Q ss_pred ecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEE---Eec
Q 013203 204 AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATM 280 (447)
Q Consensus 204 ~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~---i~~ 280 (447)
.-.|.|.|.++|+.+. |++- |++.+++|.|+..+|||++.++ .+++.++.||.|..++ +++
T Consensus 292 kLpIGD~ATQyFAdrd------iFCA-----GRV~~eDl~Rv~~acGGsi~tt-----~~~i~~~~LG~C~~FeE~QvG~ 355 (543)
T KOG0361|consen 292 KLPIGDLATQYFADRD------IFCA-----GRVPEEDLNRVMQACGGSIQTT-----VSDIKEEVLGTCALFEERQVGG 355 (543)
T ss_pred cccchHHHHHHhhccC------ceec-----CcCCHHHHHHHHHhcCcchhhh-----hhhcchhhcchhhhHHHHhhcc
Confidence 8899999999888643 4442 4677899999999999999996 7889999999999996 789
Q ss_pred ceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 013203 281 DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG- 359 (447)
Q Consensus 281 ~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~g- 359 (447)
++|.+|+||+.. ++||+++||+.++.++|.||++|||++++|.|++..
T Consensus 356 eRyN~Fegcp~a-------------------------------ktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~ 404 (543)
T KOG0361|consen 356 ERYNLFEGCPKA-------------------------------KTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDS 404 (543)
T ss_pred hhhhhhcCCCcc-------------------------------ceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCc
Confidence 999999999875 469999999999999999999999999999999986
Q ss_pred CcCChhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHH--------------------Hhh--h-cCCCCeeEeCCCCcc
Q 013203 360 IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNAL--------------------KLL--E-QDSSDLGYNPARGNY 415 (447)
Q Consensus 360 vVpGGGa~e~~~s~~L~~~~~~-~~~~~~~i~~~a~AL--------------------kl~--~-~~~~~~G~d~~~~~~ 415 (447)
+|+|||+.||++|++|++|+.. .|++|+-+.+|++|| ||+ | +|..|+|+|..++.+
T Consensus 405 vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i 484 (543)
T KOG0361|consen 405 VVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGI 484 (543)
T ss_pred EeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccch
Confidence 9999999999999999999985 999999999999999 444 2 678899999999999
Q ss_pred ccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 416 VDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 416 ~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
.||++.+||||..||.+|+..|+++|++||+|
T Consensus 485 ~dn~~~~VwEP~~VK~Nai~aateAa~lIlsv 516 (543)
T KOG0361|consen 485 ADNFEKFVWEPSIVKINAITAATEAACLILSV 516 (543)
T ss_pred hhHHHhhccChHHHHHHHHHHHHHhhhheEeh
Confidence 99999999999999999999999999999975
No 35
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=2.4e-63 Score=524.33 Aligned_cols=382 Identities=20% Similarity=0.312 Sum_probs=338.8
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
+.+|||+|++.||+++++ +++++.||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.+++.
T Consensus 31 g~tIl~~l~~~~P~~~ll------~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~ 104 (485)
T PF00118_consen 31 GATILKSLKINHPIAKLL------VEASKSQDEEVGDGTTSVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEY 104 (485)
T ss_dssp HHHHHHHSTBSSHHHHHH------HHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhhccchhhhH------HHhHHHHHhhhccccceeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhh
Confidence 568999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCH-HHHHHHHHHhcCCC------hhHHHHHHHHHHhhccc---cccee--ecCCcccceeEEEeeEEEeec
Q 013203 84 LDCQARKITTF-EEIAQVGTTAANGD------GEIGELIAKVFEKGWEN---DLITI--FDRKALYNELNFVKGMKLEWG 151 (447)
Q Consensus 84 L~~~~~~v~~~-~~l~~va~ts~~~~------~~l~~li~~A~~~vg~~---~~I~v--~~g~~~~d~~~~~~G~~~~~g 151 (447)
|++++.++++. +.+.++++++.+++ +.|++++++|+..+..+ +.+.+ ..|++. +++++++|++|+++
T Consensus 105 l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~~~i~i~~i~g~~~-~dS~li~Giv~~~~ 183 (485)
T PF00118_consen 105 LEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDLDNIKIIKIPGGSI-SDSELINGIVLDKG 183 (485)
T ss_dssp HHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHGGGEEEEEEESSSS-GGEEEESEEEESSS
T ss_pred hhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccccchhhhhhccccc-cccccccceeeecc
Confidence 99999999876 89999999999876 79999999999444211 12333 256677 46899999999999
Q ss_pred ccCcccccccccceeeecCcEEEEeccccCCHHH-----------------------HHHHHHHHHhcCCCEEEEecCcc
Q 013203 152 LKSPYFFTHKNKKECVLDGALVLIYDTKISNSNV-----------------------IRQASLPCMMQGQSLLVVAEDVE 208 (447)
Q Consensus 152 ~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~-----------------------~~~~le~i~~~~~~lvii~~~i~ 208 (447)
|.++.| +..+++|+|++++++++..+. +.++++++.+.|+|+||++++|+
T Consensus 184 ~~~~~~-------~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~ 256 (485)
T PF00118_consen 184 FSSPNM-------PKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSID 256 (485)
T ss_dssp BSSTTS-------BSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBT
T ss_pred cccccc-------ccccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccc
Confidence 999854 336799999999998877766 88999999999999999999999
Q ss_pred hhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEE---EEecceEEE
Q 013203 209 NEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVI 285 (447)
Q Consensus 209 ~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v---~i~~~~~~~ 285 (447)
+.++++|..|+ |.+++. +++++|+|||++|||+++++ +++++++++|+|+.+ +++++++++
T Consensus 257 ~~~l~~l~~~~------I~~i~~-----v~~~~l~~i~~~tg~~ii~~-----~~~l~~~~lG~~~~v~~~~i~~~~~~~ 320 (485)
T PF00118_consen 257 DEALQYLNKNG------ILVIRR-----VSKEDLERIARATGASIISS-----LDDLSDEDLGFCKSVEEREIGNKKYIF 320 (485)
T ss_dssp HHHHHHHHHCT------HEEESS-----EHHHHHHHHHHHHTSBEBSS-----CGGSTGGGSEEEEEEEEEEETSSEEEE
T ss_pred cccchhhhhhh------hhcccc-----chHHHHHhhhcccCCcEecc-----cccccchhhhhhhhhhhcccccccccc
Confidence 99999998764 677774 57789999999999999997 688888889999999 678999999
Q ss_pred EeC--CCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC-CcC
Q 013203 286 IGG--SGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVP 362 (447)
Q Consensus 286 i~g--~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~g-vVp 362 (447)
+++ +. .++.+||+|||+|+.+++|+||+++||+++++++++++ +||
T Consensus 321 ~~~~~~~-------------------------------~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvp 369 (485)
T PF00118_consen 321 IEGIGCL-------------------------------SSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVP 369 (485)
T ss_dssp EEEHSES-------------------------------SSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEE
T ss_pred ccccccc-------------------------------ccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceee
Confidence 984 43 34689999999999999999999999999999999975 999
Q ss_pred ChhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHH--------------------Hhh--hcCCCCeeEeCCCCcccccc
Q 013203 363 GSGVALLYASKELDKLQT-TNSDQKIGVQIVQNAL--------------------KLL--EQDSSDLGYNPARGNYVDMF 419 (447)
Q Consensus 363 GGGa~e~~~s~~L~~~~~-~~~~~~~~i~~~a~AL--------------------kl~--~~~~~~~G~d~~~~~~~dm~ 419 (447)
|||++|++++.+|++++. .++++++++++|++|| ++. |..+.++|||..+|++.||+
T Consensus 370 GGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~~~g~d~~~~~i~~~~ 449 (485)
T PF00118_consen 370 GGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGNNYGIDLDTGEIVDMK 449 (485)
T ss_dssp TTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTTTEEEETTTTEEEETT
T ss_pred cCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccccccCcCccCCceeccc
Confidence 999999999999988876 4889999999999999 232 24556999999999999999
Q ss_pred ccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 420 KCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 420 ~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
+.|||||+.+|+++++.|+++|++||+|
T Consensus 450 ~~gi~dp~~~k~~~l~~A~~~a~~iL~i 477 (485)
T PF00118_consen 450 EAGILDPLLVKISALKSAVEIASLILRI 477 (485)
T ss_dssp TTTCEEEHHHHHHHHHHHHHHHHHHHTE
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986
No 36
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-64 Score=485.36 Aligned_cols=394 Identities=19% Similarity=0.206 Sum_probs=335.5
Q ss_pred HHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHH
Q 013203 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (447)
Q Consensus 6 ~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~L 84 (447)
-||||.|.+.||+|||+ +++|++||.|+||||||||||||+||..+.+|++ |+||+.|...|+.|.+.++++|
T Consensus 69 aTILk~m~vlhP~akmL------velS~aQD~eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il 142 (534)
T KOG0358|consen 69 ATILKQMNVLHPAAKML------VELSAAQDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDIL 142 (534)
T ss_pred HHHHHHHhhhChHHHHH------HHhhhhccccccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHH
Confidence 58999999999999988 6999999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc-cc-------ccee--ecCCcccceeEEEeeE
Q 013203 85 DCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE-ND-------LITI--FDRKALYNELNFVKGM 146 (447)
Q Consensus 85 ~~~~~~v~--~~~~l~~va~ts~~~------~~~l~~li~~A~~~vg~-~~-------~I~v--~~g~~~~d~~~~~~G~ 146 (447)
.+|+.|++ |++.|.+-|+||.|+ +..++.+.++|+.++-. +. .|++ +.||+++ ++++++|+
T Consensus 143 ~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvd-Dte~i~gl 221 (534)
T KOG0358|consen 143 DEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVD-DTELIKGL 221 (534)
T ss_pred HhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCcccccccchhhhhhHHhhCCccc-hhhhhcce
Confidence 99999986 677799999998873 66799999999998743 21 2444 3788884 68999999
Q ss_pred EEeecccCcccccccccc---ee--eecCcE------EEEecc-----ccCCH-HHHHHHHHHHHhcCCCEEEEecCcch
Q 013203 147 KLEWGLKSPYFFTHKNKK---EC--VLDGAL------VLIYDT-----KISNS-NVIRQASLPCMMQGQSLLVVAEDVEN 209 (447)
Q Consensus 147 ~~~~g~~~p~~~~~~~~~---~~--~l~~p~------Il~~d~-----~i~~~-~~~~~~le~i~~~~~~lvii~~~i~~ 209 (447)
+|+.......-++..++. .+ .++.|+ |++.|- -+++. +++++++++|+++|+++++++++|-.
T Consensus 222 vl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILR 301 (534)
T KOG0358|consen 222 VLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILR 301 (534)
T ss_pred EEeeecccCCCcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHH
Confidence 998765422122222222 22 334454 333331 12222 35789999999999999999999999
Q ss_pred hHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEE-E---ecceEEE
Q 013203 210 EVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI-A---TMDNVVI 285 (447)
Q Consensus 210 ~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~-i---~~~~~~~ 285 (447)
++++.|+.|.+.. ++|++|| ++.++++|++|+.+|++++++ ++.++++.||+++.++ + ++.+++-
T Consensus 302 davsDLAlHfL~k-lkimvik-----dieRediefick~l~c~Pia~-----id~f~~d~Lg~adlveE~~~~G~gkivk 370 (534)
T KOG0358|consen 302 DAVSDLALHFLAK-LKIMVIK-----DIEREDIEFICKTLGCKPIAD-----IDHFTADKLGSADLVEETDSSGEGKIVK 370 (534)
T ss_pred HHHHHHHHHHHHh-CcEEEEc-----cccHhhHHHHHhhcCCeecch-----hhhcChhhcCcchhhhhcccCCCccEEE
Confidence 9999888888766 7999999 456688999999999999997 8999999999999886 3 4557888
Q ss_pred EeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC-CcCCh
Q 013203 286 IGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGS 364 (447)
Q Consensus 286 i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~g-vVpGG 364 (447)
+.|+.++ |++++|++||+++..++|.||++|||||++|+..+.. ++|||
T Consensus 371 ~tg~~n~------------------------------g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GG 420 (534)
T KOG0358|consen 371 ITGIQNA------------------------------GRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGG 420 (534)
T ss_pred EEEeecC------------------------------CCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCC
Confidence 8887664 6789999999999999999999999999999999875 99999
Q ss_pred hHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHH--------------------Hhhh---cCCCCeeEeCCCCccccccc
Q 013203 365 GVALLYASKELDKLQTT-NSDQKIGVQIVQNAL--------------------KLLE---QDSSDLGYNPARGNYVDMFK 420 (447)
Q Consensus 365 Ga~e~~~s~~L~~~~~~-~~~~~~~i~~~a~AL--------------------kl~~---~~~~~~G~d~~~~~~~dm~~ 420 (447)
|+.||+++..|..++.. .|.+.|++++|++|| +|++ +|..+.|+|+++|.+.||++
T Consensus 421 GapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~e 500 (534)
T KOG0358|consen 421 GAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILE 500 (534)
T ss_pred CCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHH
Confidence 99999999999999885 899999999999999 4442 56789999999999999999
Q ss_pred cCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 421 CGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 421 ~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
..|+.|+.|-.++++.|++...+||+|
T Consensus 501 e~VvQPllVs~SaitlA~Etvr~ILKI 527 (534)
T KOG0358|consen 501 ENVVQPLLVSISAITLATETVRSILKI 527 (534)
T ss_pred HhcccceeeeHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999987
No 37
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-62 Score=470.49 Aligned_cols=380 Identities=18% Similarity=0.221 Sum_probs=329.4
Q ss_pred HHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHH
Q 013203 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (447)
Q Consensus 6 ~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~L 84 (447)
-+|||++.++||+||+| +++|+-||+|+|||||||+|||++||++|++|+. .+||+.|++||++|...+++.|
T Consensus 63 AtILksi~vDnpaAkvL------v~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL 136 (527)
T KOG0363|consen 63 ATILKSIGVDNPAAKVL------VDISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEAL 136 (527)
T ss_pred HHHHHhcCCCCchhhhe------eccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHH
Confidence 48999999999999988 6999999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC-C----HHHHHHHHHHhcC------CChhHHHHHHHHHHhhcccc---ccee--ecCCcccceeEEEeeEEE
Q 013203 85 DCQARKIT-T----FEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND---LITI--FDRKALYNELNFVKGMKL 148 (447)
Q Consensus 85 ~~~~~~v~-~----~~~l~~va~ts~~------~~~~l~~li~~A~~~vg~~~---~I~v--~~g~~~~d~~~~~~G~~~ 148 (447)
.+.++.-. + +++|.++|+|... +.++|+++.++|+.++...+ .|.| ..||++.| +.+-+|+.+
T Consensus 137 ~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~d-SfLDeGFlL 215 (527)
T KOG0363|consen 137 TKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLED-SFLDEGFLL 215 (527)
T ss_pred HHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCcccc-cccccccee
Confidence 99887643 2 4789999987664 35789999999999985443 2443 47889975 789999999
Q ss_pred eecccCcccccccccceeeecCcEEEEeccccC--------------C---------H--HHHHHHHHHHHhcCCCEEEE
Q 013203 149 EWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS--------------N---------S--NVIRQASLPCMMQGQSLLVV 203 (447)
Q Consensus 149 ~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~--------------~---------~--~~~~~~le~i~~~~~~lvii 203 (447)
++.+-- .+| .+++||+||+-+.++. + + +.+.+.+++|.+.|.|++|-
T Consensus 216 ~K~igv----~qp----kriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiN 287 (527)
T KOG0363|consen 216 DKKIGV----NQP----KRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFIN 287 (527)
T ss_pred ccccCC----CCc----ccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEee
Confidence 986432 112 3789999999876432 1 1 23567789999999998887
Q ss_pred ecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEE---Eec
Q 013203 204 AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATM 280 (447)
Q Consensus 204 ~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~---i~~ 280 (447)
..-|-+...+.|.. .+|++|.-.+|.. +|||+..|||.++|+ |++++...||+|+.++ +++
T Consensus 288 RQLiYnyPeqLf~d------agi~aIEHADFdG-----iERLalvtGGeI~ST-----Fd~p~~~klG~C~~IeeimiGe 351 (527)
T KOG0363|consen 288 RQLIYNYPEQLFAD------AGIMAIEHADFDG-----IERLALVTGGEIVST-----FDNPELVKLGECDLIEEIMIGE 351 (527)
T ss_pred hhHhhcCHHHHHhh------cCcceeecccchh-----HHHHhhcccceeeec-----cCCcchhccccchhhHHHhcCc
Confidence 77788877776664 4689999887765 899999999999997 8999999999999875 799
Q ss_pred ceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 013203 281 DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG- 359 (447)
Q Consensus 281 ~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~g- 359 (447)
+++.-|.||+-.+ .|||++||+|++.+||.||++|||||+.-...++.
T Consensus 352 d~li~FSGv~~Ge-------------------------------ActIVlrGat~q~LDEaeRslHDALcVLaqtv~esr 400 (527)
T KOG0363|consen 352 DKLIKFSGVKLGE-------------------------------ACTIVLRGATQQILDEAERSLHDALCVLAQTVKESR 400 (527)
T ss_pred cceeeeccccccc-------------------------------ceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 9999999986543 59999999999999999999999999999888885
Q ss_pred CcCChhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHH--------------------Hhh---hcCCCCeeEeCCCCcc
Q 013203 360 IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNAL--------------------KLL---EQDSSDLGYNPARGNY 415 (447)
Q Consensus 360 vVpGGGa~e~~~s~~L~~~~~~-~~~~~~~i~~~a~AL--------------------kl~---~~~~~~~G~d~~~~~~ 415 (447)
+|.|||++||.+++.+.+++.. +|++..++++|++|| +|+ ++|..++|+|+++|++
T Consensus 401 vv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i 480 (527)
T KOG0363|consen 401 VVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEI 480 (527)
T ss_pred eeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCch
Confidence 9999999999999999999874 999999999999999 344 2678899999999999
Q ss_pred ccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 416 VDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 416 ~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
.||.+.||+|+++||++.+.+|.++|.+|||+
T Consensus 481 ~dm~~~Gi~es~~vK~~vv~sasEaae~ilrv 512 (527)
T KOG0363|consen 481 GDMRELGIVESLKVKQAVVSSASEAAEMILRV 512 (527)
T ss_pred hhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 99999999999999999999999999999974
No 38
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-60 Score=463.30 Aligned_cols=381 Identities=14% Similarity=0.125 Sum_probs=332.8
Q ss_pred HHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHH
Q 013203 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (447)
Q Consensus 6 ~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~L 84 (447)
..||++++++||+||++ +++|++||+|||||||||++||+|+|.++..+++ |+||+.|++.|.+|++.++..|
T Consensus 62 ~ailrei~Vahpaaksm------iel~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~ 135 (527)
T KOG0364|consen 62 NAILREIDVAHPAAKSM------IELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRAL 135 (527)
T ss_pred HHHHHHHhhcCcchhhH------hhhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHH
Confidence 46899999999999988 7999999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccc-cc-------ceee--cCCcccceeEEEeeE
Q 013203 85 DCQARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEN-DL-------ITIF--DRKALYNELNFVKGM 146 (447)
Q Consensus 85 ~~~~~~v~--~~~~l~~va~ts~~------~~~~l~~li~~A~~~vg~~-~~-------I~v~--~g~~~~d~~~~~~G~ 146 (447)
++++.|++ +...+.++...+.. .++.++++..+|+.+|+.+ |. .+++ +|+.++ ++++++|+
T Consensus 136 ~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~-~s~vl~Gv 214 (527)
T KOG0364|consen 136 DKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLE-DSCVLKGV 214 (527)
T ss_pred HhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCccccc-ccceecce
Confidence 99888875 55667777665553 2667899999999999864 32 2333 788886 58999999
Q ss_pred EEeecccCcccccccccceeeecCcEEEEeccccCC------------------------HHHHHHHHHHHHhcCCCEEE
Q 013203 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN------------------------SNVIRQASLPCMMQGQSLLV 202 (447)
Q Consensus 147 ~~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~------------------------~~~~~~~le~i~~~~~~lvi 202 (447)
.+++...||.| +..++||+|+++|+++.. .+++..+++.|.....+||+
T Consensus 215 ~~nkdv~Hpkm-------rr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVi 287 (527)
T KOG0364|consen 215 MINKDVTHPKM-------RRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVI 287 (527)
T ss_pred eeccccCcHHH-------HHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEE
Confidence 99999999976 347899999999987531 23456778888888888888
Q ss_pred EecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCcee-eeEEEE---
Q 013203 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVIA--- 278 (447)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~-a~~v~i--- 278 (447)
+.++++|.++|+|..++ +.++| +.||.+..|+|++||++++++ ++++.+.+.|. |+.+++
T Consensus 288 tekG~sdla~hyl~k~~------iT~~r-----r~rKtDn~ria~acga~iv~r-----pedl~e~dvGt~agLf~~kK~ 351 (527)
T KOG0364|consen 288 TEKGVSDLAQHYLLKAN------ITAIR-----RLRKTDNNRIARACGARIVNR-----PEDLPERDVGTGAGLFEVKKI 351 (527)
T ss_pred eccchhHHHHHHHHhcC------chhhh-----hhhccccchhhhhcCceeccC-----hhhCchhccCcccceeeeecc
Confidence 99999999999999865 55676 478889999999999999997 89999999995 888874
Q ss_pred ecceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhc
Q 013203 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (447)
Q Consensus 279 ~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~ 358 (447)
+++.|+||+.|++|++ |||++||+|..+++|.+|.+.||+.++|+.+-+
T Consensus 352 gdeyf~f~~~Ck~pka-------------------------------Ctillrg~skdil~e~ernlqda~~varn~ii~ 400 (527)
T KOG0364|consen 352 GDEYFTFFTDCKEPKA-------------------------------CTILLRGPSKDILNEVERNLQDAMGVARNVIIN 400 (527)
T ss_pred CchhhhhhhhcCCCcc-------------------------------eEEEeccCchhHHHHHHHHhhhHHHHHHHhccC
Confidence 6788999999999965 999999999999999999999999999999887
Q ss_pred C-CcCChhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHH----Hh----------------h--h-cCCCCeeEeCCCC
Q 013203 359 G-IVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNAL----KL----------------L--E-QDSSDLGYNPARG 413 (447)
Q Consensus 359 g-vVpGGGa~e~~~s~~L~~~~~-~~~~~~~~i~~~a~AL----kl----------------~--~-~~~~~~G~d~~~~ 413 (447)
. ++|||||+||+.|+.|.+.+. .+|-+++.+.+++.|| ++ + | .|...+|+|..+|
T Consensus 401 PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg 480 (527)
T KOG0364|consen 401 PKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETG 480 (527)
T ss_pred CcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCcee
Confidence 5 999999999999999998665 4899999999999999 11 1 2 4556789999999
Q ss_pred ccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 414 NYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 414 ~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
.++||.+.|+|+|..+|.+..++|.+.|+++|||
T Consensus 481 ~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRI 514 (527)
T KOG0364|consen 481 VIVDMVELGIWEPEAVKLQTGKTAVESACLLLRI 514 (527)
T ss_pred eEeeeeeccccchhhhhhhhhhHHHHHHHHHHhh
Confidence 9999999999999999999999999999999997
No 39
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-58 Score=454.69 Aligned_cols=386 Identities=16% Similarity=0.208 Sum_probs=332.8
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
..+||+.+.+.||++|+| +++++.||+|+|||||+|+++|++||+.+.+|+. ++||+.|+.||+.|+..++++
T Consensus 61 gAtiL~~l~V~HPa~KiL------velaq~qd~evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~ 134 (545)
T KOG0360|consen 61 GATILSLLEVEHPAAKVL------VELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKY 134 (545)
T ss_pred HHHHHHhhhhcchHHHHH------HHHHHhccccccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHH
Confidence 358999999999999988 6999999999999999999999999999999999 999999999999999999999
Q ss_pred Hhc-cccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc---cc-------ccee--ecCCcccceeEE
Q 013203 84 LDC-QARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE---ND-------LITI--FDRKALYNELNF 142 (447)
Q Consensus 84 L~~-~~~~v~--~~~~l~~va~ts~~~------~~~l~~li~~A~~~vg~---~~-------~I~v--~~g~~~~d~~~~ 142 (447)
+.+ ++.|++ ..+-|.+++++++++ .++|++++++|+..+.. +| .++| -.|.+.. +|.+
T Consensus 135 i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~-eS~l 213 (545)
T KOG0360|consen 135 ITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQI-ESML 213 (545)
T ss_pred hhccceeehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccch-hhee
Confidence 986 567776 357899999998863 67999999999987632 23 2333 2687775 5899
Q ss_pred EeeEEEeecccCcccccccccceeeecCcEEEEeccc-------------cCCHHHHH-----------HHHHHHHhcCC
Q 013203 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIR-----------QASLPCMMQGQ 198 (447)
Q Consensus 143 ~~G~~~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~-------------i~~~~~~~-----------~~le~i~~~~~ 198 (447)
+.|+.++....+..| +.++.|+||+++|.. +.+++++. +-++++..+|+
T Consensus 214 ~~GyaLnc~~asq~m-------~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ga 286 (545)
T KOG0360|consen 214 LPGYALNCSVASQMM-------PLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGA 286 (545)
T ss_pred ecceeeeccHhhhcc-------ccccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCC
Confidence 999999998877765 346779999999964 34555443 34778889999
Q ss_pred CEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCc-CCCCCCCceeeeEE-
Q 013203 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNS-TYFVPLKLGSCKRV- 276 (447)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~-~~~~~~~LG~a~~v- 276 (447)
++|+++++|||.++.+|+.. +++|||+ +++++|++||++||++++++...+.- +.+++..+|+|++|
T Consensus 287 nvVLtt~gIddmc~K~~vea------gamAVrR-----~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evv 355 (545)
T KOG0360|consen 287 NVVLTTGGIDDMCLKYFVEA------GAMAVRR-----CKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVV 355 (545)
T ss_pred cEEEEcCCccHHHHHHHHHc------chhhhHH-----HHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHH
Confidence 99999999999999999874 5789985 68899999999999999998543322 35778899999998
Q ss_pred --EEecceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHH
Q 013203 277 --IATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (447)
Q Consensus 277 --~i~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~ 354 (447)
.+++|+++.+.|.+.. .|+|++||+|++.+||+||++|||+|++|.
T Consensus 356 qeri~dde~ilikg~ka~--------------------------------~aSiILrgaNd~~~DEmers~hdaL~Vlkr 403 (545)
T KOG0360|consen 356 QERIGDDELILIKGTKAT--------------------------------SASIILRGANDFMLDEMERSLHDALCVLKR 403 (545)
T ss_pred HHhcccceeEEeccCccc--------------------------------eeeEEEecCCcccHhhhccchhhHHHHHHH
Confidence 4789999999885432 589999999999999999999999999999
Q ss_pred HHhcC-CcCChhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHH--------------------Hhh--h---c------
Q 013203 355 AKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNAL--------------------KLL--E---Q------ 401 (447)
Q Consensus 355 a~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~~~~i~~~a~AL--------------------kl~--~---~------ 401 (447)
.++++ +|||||++|.+++-+|+.|+.. +++||.++..|+.|| +++ | +
T Consensus 404 tLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~ 483 (545)
T KOG0360|consen 404 TLESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRL 483 (545)
T ss_pred HhccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccc
Confidence 99998 9999999999999999999985 789999999999999 222 1 1
Q ss_pred CCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 402 DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 402 ~~~~~G~d~~~~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
...++|+|..+|++.|.++.|+++|.-+|...|+.|+++|.++|||
T Consensus 484 ~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLri 529 (545)
T KOG0360|consen 484 LLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRI 529 (545)
T ss_pred cchhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcch
Confidence 2347899999999999999999999999999999999999999997
No 40
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-55 Score=440.70 Aligned_cols=388 Identities=15% Similarity=0.164 Sum_probs=318.8
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
|-+||++++++||+||++ ++++++|+++.||||+++++||++||++|+++|. |++|.+|++||+.|.+.+++.
T Consensus 68 aatIlrelev~HPaakll------v~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~ 141 (537)
T KOG0362|consen 68 AATILRELEVEHPAAKLL------VEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEI 141 (537)
T ss_pred hHHHHHHhhccCcHHHHH------HHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 679999999999999977 7999999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcccc-ccCCHHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccccc-----ceee--cCCcccceeEEEeeEEEee
Q 013203 84 LDCQAR-KITTFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWENDL-----ITIF--DRKALYNELNFVKGMKLEW 150 (447)
Q Consensus 84 L~~~~~-~v~~~~~l~~va~ts~~-----~~~~l~~li~~A~~~vg~~~~-----I~v~--~g~~~~d~~~~~~G~~~~~ 150 (447)
|+++.. .+.|.++...+++++.+ +++++++++++|+.++.+.+. |+|- .|+++++ |.++.||+|++
T Consensus 142 l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~-S~Vv~GmVfkr 220 (537)
T KOG0362|consen 142 LPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLED-SCVVCGMVFKR 220 (537)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcccccccccceEEEEEecCCccc-ceeeEEEEecc
Confidence 999863 22332222244444432 378999999999999987643 4442 6888875 89999999998
Q ss_pred cccCcccccccccce-eeecCcE-EEEeccc----cCCHHHHH-----------HHHHHHHhcCCCEEEEecCcchhHHH
Q 013203 151 GLKSPYFFTHKNKKE-CVLDGAL-VLIYDTK----ISNSNVIR-----------QASLPCMMQGQSLLVVAEDVENEVLG 213 (447)
Q Consensus 151 g~~~p~~~~~~~~~~-~~l~~p~-Il~~d~~----i~~~~~~~-----------~~le~i~~~~~~lvii~~~i~~~al~ 213 (447)
.....- +..+..+ ..+.+|. +.-++.| |+++++++ ..++.+..+|.++++..+.+++.+|+
T Consensus 221 ~~eG~v--~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lh 298 (537)
T KOG0362|consen 221 DPEGEV--KSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLH 298 (537)
T ss_pred ccCCcc--cccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhh
Confidence 765431 2122122 2344552 3333333 66766654 44777888999999999999999998
Q ss_pred HHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEE---EecceEEEEeCCC
Q 013203 214 DIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATMDNVVIIGGSG 290 (447)
Q Consensus 214 ~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~---i~~~~~~~i~g~~ 290 (447)
++|+ ++|+++|.++..+ |.|||+..||++.++ +..+.++.+|.|++|. ++++.+++|....
T Consensus 299 --flnk----y~ImVlqi~Sk~e-----LrrlcrtvGA~~l~r-----l~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~ 362 (537)
T KOG0362|consen 299 --FLNK----YKIMVLQINSKFD-----LRRLCRTVGATALPR-----LFPPAPEELGYCDSVSTQEIGDTLVVVFRWES 362 (537)
T ss_pred --hhcc----ccEEEEEeccHhh-----HHHHHHHcCCccchh-----ccCCCCccccccceeeeeecCCceEEEEeecc
Confidence 5555 8899999987554 889999999999996 8889999999999884 6788887776532
Q ss_pred ChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC-CcCChhHHHH
Q 013203 291 ELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALL 369 (447)
Q Consensus 291 ~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~g-vVpGGGa~e~ 369 (447)
. .++++||++||+|+..+|+.||.++|+++++|..++++ ++||+|++|+
T Consensus 363 ~------------------------------~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEi 412 (537)
T KOG0362|consen 363 T------------------------------GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEI 412 (537)
T ss_pred C------------------------------CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHH
Confidence 2 13579999999999999999999999999999999996 9999999999
Q ss_pred HHHHHHHHhcC-CCchhHHHHHHHHHHH--------------------Hhh--hcCCCCeeEeCCCC-ccccccccCccc
Q 013203 370 YASKELDKLQT-TNSDQKIGVQIVQNAL--------------------KLL--EQDSSDLGYNPARG-NYVDMFKCGDVD 425 (447)
Q Consensus 370 ~~s~~L~~~~~-~~~~~~~~i~~~a~AL--------------------kl~--~~~~~~~G~d~~~~-~~~dm~~~gI~D 425 (447)
++++.|.+|+. .+|..|+++..|++|| +++ |.+..+.|+|+... ...|+.+.||||
T Consensus 413 eLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D 492 (537)
T KOG0362|consen 413 ELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWD 492 (537)
T ss_pred HHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeeccccccChhhhchHH
Confidence 99999999987 4999999999999999 222 34455678888766 488999999999
Q ss_pred ccccHHHHHHHHHHHHHHHhcC
Q 013203 426 PLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 426 p~~v~~~al~~A~~~A~~iL~i 447 (447)
-+.+|.++++.|+++|.++|++
T Consensus 493 ~~~~K~~a~k~at~aa~tvl~v 514 (537)
T KOG0362|consen 493 TLAVKAQAIKLATEAALTVLTV 514 (537)
T ss_pred HHHHHHHHHHHHHhhhheeeeh
Confidence 9999999999999999999975
No 41
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-53 Score=414.05 Aligned_cols=380 Identities=17% Similarity=0.231 Sum_probs=319.0
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHH
Q 013203 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (447)
Q Consensus 5 ~~~il~~~~~~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (447)
.+++|++|||+||++-++ .-++.+||+..||||||+|+|.++|+++|..++. |+||..|..||+.|.+.++++
T Consensus 59 gnvLl~emQiqhPTa~lI------akaatAqdd~tGDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~ 132 (520)
T KOG0359|consen 59 GNVLLKEMQIQHPTASLI------AKVATAQDDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEF 132 (520)
T ss_pred chhhHHHHhhcCchHHHH------HHHHHHhhcccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhh
Confidence 478999999999999866 5788999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhc-ccccc---eee----cCCcccceeEEEeeEEEe
Q 013203 84 LDCQARKITTFEEIAQVGTTAANG------DGEIGELIAKVFEKGW-ENDLI---TIF----DRKALYNELNFVKGMKLE 149 (447)
Q Consensus 84 L~~~~~~v~~~~~l~~va~ts~~~------~~~l~~li~~A~~~vg-~~~~I---~v~----~g~~~~d~~~~~~G~~~~ 149 (447)
|+..+.++ +.+-|..+|++|.+. -+.+.+++++|+..+. +++.| .|+ .-++.. +..+++|.++|
T Consensus 133 L~k~~~~~-~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~~-dT~~v~glvLd 210 (520)
T KOG0359|consen 133 LEKVSREV-DRETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLH-DTSLVQGLVLD 210 (520)
T ss_pred hhccccch-hHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCchh-hhHHhhhhhcc
Confidence 99777776 467899999999974 3357778888888775 33322 222 223333 47899999999
Q ss_pred ecccCcccccccccceeeecCcEEEEeccccCC-------------HHH----------H-HHHHHHHHhcCC---CEEE
Q 013203 150 WGLKSPYFFTHKNKKECVLDGALVLIYDTKISN-------------SNV----------I-RQASLPCMMQGQ---SLLV 202 (447)
Q Consensus 150 ~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~-------------~~~----------~-~~~le~i~~~~~---~lvi 202 (447)
||..||.|++ .++|++||+++.+++. ++| | .+.+++|.+.++ .+|+
T Consensus 211 hg~rHpdmp~-------~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvv 283 (520)
T KOG0359|consen 211 HGARHPDMPR-------RVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVV 283 (520)
T ss_pred CCCCCccccc-------chhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEE
Confidence 9999998844 7899999999976532 211 1 233455554442 3665
Q ss_pred E-ecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEE---E
Q 013203 203 V-AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---A 278 (447)
Q Consensus 203 i-~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~---i 278 (447)
| +++|||..+..|+.+ +|+|+|++ ++..||||..+|||..+++ ++|++|+.||+|+.|. +
T Consensus 284 inqkGidp~sld~~a~~------gIlaLRRA-----KRRNmERL~lacGG~a~ns-----vddLtp~~LG~aglVye~tl 347 (520)
T KOG0359|consen 284 INQKGIDPTSLDSLAKS------GILALRRA-----KRRNMERLVLACGGEAVNS-----VDDLTPDYLGYAGLVYEYTL 347 (520)
T ss_pred ecccCCCCCcchhhhhc------chHHHHHH-----hhhhHHHHHHhhccceecc-----cccCChhhccccceeEEeec
Confidence 5 679999999988865 47899874 3457999999999999996 8999999999999995 6
Q ss_pred ecceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhc
Q 013203 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (447)
Q Consensus 279 ~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~ 358 (447)
++++|||+++|++|. .|||+++|+|++.+-++++.++|+++++++++++
T Consensus 348 GEEkfTFIE~~~~p~-------------------------------S~TiLikgpnkht~tQikdairdglrav~ntl~d 396 (520)
T KOG0359|consen 348 GEEKFTFIEKCNNPS-------------------------------SVTILIKGPNKHTITQIKDAIRDGLRAVKNTLED 396 (520)
T ss_pred cceeeEeeecCCCCc-------------------------------ceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhh
Confidence 899999999999995 4899999999999999999999999999999999
Q ss_pred C-CcCChhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHH----Hhh----------------h-cCCCCeeEeCCCCcc
Q 013203 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNAL----KLL----------------E-QDSSDLGYNPARGNY 415 (447)
Q Consensus 359 g-vVpGGGa~e~~~s~~L~~~~~~-~~~~~~~i~~~a~AL----kl~----------------~-~~~~~~G~d~~~~~~ 415 (447)
+ ++||+|+.|.++++.|+..... +++.++|+++|++|| |.+ . ......|+|..+|+.
T Consensus 397 ~~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~ 476 (520)
T KOG0359|consen 397 KCGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRGEE 476 (520)
T ss_pred cccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhcccccccCCc
Confidence 8 9999999999999999977764 899999999999999 211 1 111245999999999
Q ss_pred ccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013203 416 VDMFKCGDVDPLKHVPSEFAKATSMISLKNA 446 (447)
Q Consensus 416 ~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~ 446 (447)
.|-...||||.+.|+++.|.+++-+|+.+|-
T Consensus 477 ~~~~~~gi~Dny~v~~~~l~s~~via~nlLl 507 (520)
T KOG0359|consen 477 CDPSRKGIYDNYSVKKQLLRSEAVIATNLLL 507 (520)
T ss_pred cchhhccccchHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999999999999999998873
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-51 Score=390.25 Aligned_cols=287 Identities=18% Similarity=0.180 Sum_probs=263.1
Q ss_pred cCccccccchhhhhhhhhhhhcccccCCcchhHHhhhHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHHhccccccCC
Q 013203 15 INTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITT 93 (447)
Q Consensus 15 ~~p~a~~~~~~~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~I~~G~~~A~~~~~~~L~~~~~~v~~ 93 (447)
+||++|++ ..+|+.||.++|||||.+++|++++++++.+++. |+||..|..||+.|.+.++++|++.+.|++
T Consensus 71 d~~IakLm------v~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e- 143 (400)
T KOG0357|consen 71 VHQIAKLI------VILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE- 143 (400)
T ss_pred chHHHHHH------HHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc-
Confidence 57888866 6899999999999999999999999999999999 999999999999999999999999887765
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHhhcccccceeecCCcccceeEEEeeEEEeecccCcccccccccceeeecCcEE
Q 013203 94 FEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALV 173 (447)
Q Consensus 94 ~~~l~~va~ts~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~p~~~~~~~~~~~~l~~p~I 173 (447)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEE
Q 013203 174 LIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQV 253 (447)
Q Consensus 174 l~~d~~i~~~~~~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i 253 (447)
+..+++.++++|++|+||+|+|||+|.|.|..|++. |||+.+- -++|-||.+|||++
T Consensus 144 ------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lp------avrwVGG-----pEiEliAiaT~grI 200 (400)
T KOG0357|consen 144 ------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLP------AVRWVGG-----PEIELIAIATGGRI 200 (400)
T ss_pred ------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCC------ceeecCC-----cceEEEEeecCCee
Confidence 556788999999999999999999999999998865 8998652 35999999999999
Q ss_pred eeCCCCCCcCCCCCCCceeeeEEE-E----ecceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEE
Q 013203 254 LTGGSGMNSTYFVPLKLGSCKRVI-A----TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVL 328 (447)
Q Consensus 254 ~~~~~~~~~~~~~~~~LG~a~~v~-i----~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~a~l~g~~atI 328 (447)
+.+ |+++++++||+|+.|+ + ++|+..+++.|++.++ .||
T Consensus 201 Vpr-----F~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nska-------------------------------VTi 244 (400)
T KOG0357|consen 201 VPR-----FSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKA-------------------------------VTI 244 (400)
T ss_pred ecc-----HhhhCHhhccccceEEEEecccccceEEEEEecCCCce-------------------------------EEE
Confidence 996 9999999999999985 2 4889999999998764 799
Q ss_pred EeccCcHHHHHHHHHHHHHHHHHHHHHHhcC-CcCChhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHH----------
Q 013203 329 KVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNAL---------- 396 (447)
Q Consensus 329 ~v~G~t~~~l~E~er~i~DAl~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~~~~i~~~a~AL---------- 396 (447)
.|||+|+.+++|.+|++|||||++||.+++. +|+|||++|+.||..+.+-++. +|.+||++++|++||
T Consensus 245 fvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaen 324 (400)
T KOG0357|consen 245 FVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAEN 324 (400)
T ss_pred EEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhc
Confidence 9999999999999999999999999999996 9999999999999999888774 999999999999999
Q ss_pred ----------Hhh----hcCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013203 397 ----------KLL----EQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 447 (447)
Q Consensus 397 ----------kl~----~~~~~~~G~d~~~~~~~dm~~~gI~Dp~~v~~~al~~A~~~A~~iL~i 447 (447)
+++ .+.++++|+|+....-.||++.+|+||+..|++.+..|+.++.|||+|
T Consensus 325 sgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKi 389 (400)
T KOG0357|consen 325 SGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKI 389 (400)
T ss_pred cCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhc
Confidence 222 256789999999888999999999999999999999999999999987
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.97 E-value=4.3e-29 Score=235.70 Aligned_cols=192 Identities=26% Similarity=0.336 Sum_probs=166.7
Q ss_pred HHHHHHHHHhcC-----CChhHHHHHHHHHHhhcc------cccceee--cCCcccceeEEEeeEEEeecccCccccccc
Q 013203 95 EEIAQVGTTAAN-----GDGEIGELIAKVFEKGWE------NDLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHK 161 (447)
Q Consensus 95 ~~l~~va~ts~~-----~~~~l~~li~~A~~~vg~------~~~I~v~--~g~~~~d~~~~~~G~~~~~g~~~p~~~~~~ 161 (447)
+.|.++|++|.+ +++.+++++++|+..+++ .+.|+++ +|+++. ++++++|++|+++|.+|+|+
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~-ds~li~Gv~~~~~~~~~~m~--- 77 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLE-DSELVVGVVFDKGYASPYMP--- 77 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChh-hceeEeeEEEeccccCCCCC---
Confidence 468899999988 688899999999999987 3567775 687775 58999999999999999883
Q ss_pred ccceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhh
Q 013203 162 NKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAI 241 (447)
Q Consensus 162 ~~~~~~l~~p~Il~~d~~i~~~~~~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ 241 (447)
..++||+|++++++++. +|+++++|++.++++|..+ +|++|++ +++++
T Consensus 78 ----~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~------~I~~v~~-----~~~~~ 125 (209)
T cd03333 78 ----KRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKA------GIMAVRR-----VKKED 125 (209)
T ss_pred ----eEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHC------CCEEEEe-----CCHHH
Confidence 47899999999999886 7777888999999988873 5899986 56788
Q ss_pred HHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEEe---cceEEEEeCCCChhhHHHHHHHHHHHhhhcccHHHHHHH
Q 013203 242 MEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRL 318 (447)
Q Consensus 242 le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i~---~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~l~eR~ 318 (447)
|+|||++|||+++++ ++++++++||+|++|++. +++++++.+|+.+
T Consensus 126 l~~ia~~tga~ii~~-----~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~-------------------------- 174 (209)
T cd03333 126 LERIARATGATIVSS-----LEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGG-------------------------- 174 (209)
T ss_pred HHHHHHHHCCEEecc-----cccCChhhceeeeEEEEEEECCeEEEEEEcCCCC--------------------------
Confidence 999999999999996 788899999999999864 4568889887654
Q ss_pred hhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhc
Q 013203 319 AKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (447)
Q Consensus 319 a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~ 358 (447)
+.|||+|||+|+.+++|.||+++||++++++++++
T Consensus 175 -----~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 175 -----KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred -----CEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 46999999999999999999999999999999864
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.95 E-value=6.8e-27 Score=227.66 Aligned_cols=198 Identities=11% Similarity=0.136 Sum_probs=164.4
Q ss_pred ChhHHHHHHHHHHhhccc---c-------cceee--cCCcccceeEEEeeEEEeecccCcccccccccceeeecCcEEEE
Q 013203 108 DGEIGELIAKVFEKGWEN---D-------LITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLI 175 (447)
Q Consensus 108 ~~~l~~li~~A~~~vg~~---~-------~I~v~--~g~~~~d~~~~~~G~~~~~g~~~p~~~~~~~~~~~~l~~p~Il~ 175 (447)
.+.|++++++|+..+.++ + .|+|+ +|+++. ++++++|++|++++.++.|+ ..++||+|++
T Consensus 20 ~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~-dS~li~Gvvi~k~~~~~~m~-------~~i~n~kIll 91 (261)
T cd03334 20 LDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPS-DSEVVDGVVFTKNVAHKRMP-------SKIKNPRILL 91 (261)
T ss_pred HHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHH-HcEEEeeEEEeCCCCCccCC-------cccCCCcEEE
Confidence 567999999999988532 1 25554 798885 58999999999998887663 3789999999
Q ss_pred eccccCC------HH-----------HHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccch
Q 013203 176 YDTKISN------SN-----------VIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDR 238 (447)
Q Consensus 176 ~d~~i~~------~~-----------~~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r 238 (447)
++++++. +. .+..++++++..|+++|+++++|++.++++|..+ +|++++++ +
T Consensus 92 l~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~------gI~~v~~v-----~ 160 (261)
T cd03334 92 LQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA------GITLVLNV-----K 160 (261)
T ss_pred EeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC------CCEEEEec-----C
Confidence 9987642 11 2456788899999999999999999999988874 58899964 5
Q ss_pred hhhHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEE---ec-----ceEEEEeCCCChhhHHHHHHHHHHHhhhcc
Q 013203 239 KAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---TM-----DNVVIIGGSGELVDIQERCEQLRSTIKLST 310 (447)
Q Consensus 239 ~~~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i---~~-----~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~ 310 (447)
+++|+|||++|||+++++. .+++++++||+|+.|++ ++ +++++|++|+.+
T Consensus 161 ~~dl~rIa~~tGa~ii~~i----~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~------------------ 218 (261)
T cd03334 161 PSVLERISRCTGADIISSM----DDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE------------------ 218 (261)
T ss_pred HHHHHHHHHHhCCEEecCh----hhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC------------------
Confidence 6789999999999999961 34788899999999975 33 589999999765
Q ss_pred cHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013203 311 SDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (447)
Q Consensus 311 ~~~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a~~~g 359 (447)
+.+||+|||+|+..++|.||+++||+++++++..+.
T Consensus 219 -------------~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 219 -------------LGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred -------------ceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 368999999999999999999999999999997764
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=98.90 E-value=1.5e-08 Score=114.22 Aligned_cols=204 Identities=12% Similarity=0.187 Sum_probs=146.6
Q ss_pred hHHHHHHHHHHhhccc----------ccceee--cCCcccceeEEEeeEEEeecccCcccccccccceeeecCcEEEEec
Q 013203 110 EIGELIAKVFEKGWEN----------DLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYD 177 (447)
Q Consensus 110 ~l~~li~~A~~~vg~~----------~~I~v~--~g~~~~d~~~~~~G~~~~~g~~~p~~~~~~~~~~~~l~~p~Il~~d 177 (447)
.+..++.+|...+.++ +.+.|+ .||+. .+++++.|+++.+-..+-.| ...+++|+|++..
T Consensus 336 ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~-~dS~vi~Gvv~sKn~~~k~M-------~~~~e~prilll~ 407 (1598)
T KOG0230|consen 336 IITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSR-VDSEVIKGVVCSKNVAHKRM-------ATKYENPRILLLG 407 (1598)
T ss_pred HHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCc-ccceeeeEEEeecchhhhhh-------hhhccCCceEEEe
Confidence 4556666777666443 235554 66665 46899999999987766544 4478899999987
Q ss_pred ccc---------CCHH--------HHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhh
Q 013203 178 TKI---------SNSN--------VIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKA 240 (447)
Q Consensus 178 ~~i---------~~~~--------~~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~ 240 (447)
+.+ .+.+ .+...+.+|.....+++++.++|++.|+.+|..- + |..| .+++..
T Consensus 408 g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k---~---I~lv-----lnvK~s 476 (1598)
T KOG0230|consen 408 GPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDK---G---ISLV-----LNVKRS 476 (1598)
T ss_pred cchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhcc---C---eEEE-----EeccHH
Confidence 643 2222 2334455666666778999999999999977742 2 2222 146667
Q ss_pred hHHHHHHHhCCEEeeCCCCCCcCCCCCCCceeeeEEEEe--------cceEEEEeCCCChhhHHHHHHHHHHHhhhcccH
Q 013203 241 IMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT--------MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD 312 (447)
Q Consensus 241 ~le~la~~tGa~i~~~~~~~~~~~~~~~~LG~a~~v~i~--------~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~ 312 (447)
.|+||++.|||.|+.+ ++.++...||+|..+++. .....|++||..+.
T Consensus 477 ~leRIsR~tga~I~~s-----iDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~l------------------- 532 (1598)
T KOG0230|consen 477 LLERISRCTGADIVPS-----VDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPL------------------- 532 (1598)
T ss_pred HHHHHHHHhcCceecc-----hhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCC-------------------
Confidence 8999999999999986 677888899999998753 12357899998774
Q ss_pred HHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHH-HHhcCCcCChhHHH
Q 013203 313 KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA-AKEEGIVPGSGVAL 368 (447)
Q Consensus 313 ~l~eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~-a~~~gvVpGGGa~e 368 (447)
-|||++||++..++.+.++-+.=.+-++-. +++..|+.-=|+..
T Consensus 533 ------------G~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi 577 (1598)
T KOG0230|consen 533 ------------GCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASI 577 (1598)
T ss_pred ------------CceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCcc
Confidence 389999999999999999988877766653 35555665555543
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=7.5e-05 Score=79.76 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCC-EEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhH-HHHHHHhCCEEeeCCCCCCcC
Q 013203 186 IRQASLPCMMQGQS-LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIM-EDLAILTGGQVLTGGSGMNST 263 (447)
Q Consensus 186 ~~~~le~i~~~~~~-lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~l-e~la~~tGa~i~~~~~~~~~~ 263 (447)
+..+++.+.+.|.+ ++|++++|+|.++++|..+ .|++++++ .++++ ++|+.+|||++++. ++
T Consensus 259 l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~------~Ilt~~~v-----~~~dl~~~l~~~~ga~~v~~-----~~ 322 (524)
T COG0459 259 LATLVVNILRGGANVVVVKAPGIDDLAKAYLEDI------AILTGRRV-----KKEDLGERLAKLGGAKIVSV-----LK 322 (524)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhh------cceeccee-----cchhhHHHHHHccCceEEee-----cc
Confidence 34556677789999 8888999999999988874 57888865 45567 79999999999996 79
Q ss_pred CCCCCCcee--eeEEEE---ecceEEEEeCCCC
Q 013203 264 YFVPLKLGS--CKRVIA---TMDNVVIIGGSGE 291 (447)
Q Consensus 264 ~~~~~~LG~--a~~v~i---~~~~~~~i~g~~~ 291 (447)
+.++..+|. |+.|+. ++++++++.+|..
T Consensus 323 d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~ 355 (524)
T COG0459 323 DLTTIVLGEGAAGLVEETKTGDYDMEKLQERKA 355 (524)
T ss_pred cCceeecCccccceEEEeeccchhhhhhhhhhh
Confidence 999999999 999974 4666777777653
No 47
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=58.26 E-value=23 Score=38.37 Aligned_cols=44 Identities=14% Similarity=0.014 Sum_probs=28.6
Q ss_pred HHHHHhhcccccceeecCCcccc-eeEEEeeEEEeecccCccccc
Q 013203 116 AKVFEKGWENDLITIFDRKALYN-ELNFVKGMKLEWGLKSPYFFT 159 (447)
Q Consensus 116 ~~A~~~vg~~~~I~v~~g~~~~d-~~~~~~G~~~~~g~~~p~~~~ 159 (447)
.+++..++.++.+.++++..+.+ .+.-+.|..++.+|+.|+|+.
T Consensus 178 ~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~ 222 (533)
T PTZ00212 178 KDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFIL 222 (533)
T ss_pred HHHHHHHHHHHHHHHhccCCccceEEEEecCcCccccEEEEeEEE
Confidence 45555666666666766555433 345556888888888888754
No 48
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=46.25 E-value=43 Score=36.11 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=27.6
Q ss_pred HHHHHhhcccccceeecCCcccceeEEE--eeEEEeecccCccccc
Q 013203 116 AKVFEKGWENDLITIFDRKALYNELNFV--KGMKLEWGLKSPYFFT 159 (447)
Q Consensus 116 ~~A~~~vg~~~~I~v~~g~~~~d~~~~~--~G~~~~~g~~~p~~~~ 159 (447)
.+++..++.++.+.++.+... +.+++. .|..++.+|..|+|+.
T Consensus 167 ~~~~s~l~~~av~~i~~~~~~-~~i~i~k~~G~s~~~s~l~~G~v~ 211 (519)
T TIGR02341 167 KDHFAQLAVDAVLRLKGSGNL-DAIQIIKKLGGSLNDSYLDEGFLL 211 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCh-hheEEEEccCCCcccceEEeeEEE
Confidence 445555555666666655544 346666 4888888888888754
No 49
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=41.05 E-value=1.1e+02 Score=24.51 Aligned_cols=54 Identities=15% Similarity=0.109 Sum_probs=32.6
Q ss_pred HHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCE
Q 013203 189 ASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (447)
Q Consensus 189 ~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~ 252 (447)
-++.+.+..+.+|++++|+++.....+..--.+ .+|-.+-.+ .+++|-++||-.
T Consensus 21 t~Kai~kg~~~~v~iA~Da~~~vv~~l~~lcee--k~Ip~v~V~--------s~~~LGkAcgi~ 74 (84)
T PRK13600 21 TLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQ--KNIPVSFFK--------SKHALGKHVGIN 74 (84)
T ss_pred HHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEC--------CHHHHHHHhCCC
Confidence 345555556789999999999877654421111 233334333 266888888753
No 50
>smart00574 POX domain associated with HOX domains.
Probab=37.74 E-value=51 Score=29.05 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCcCChhHHHHHHHHHHHHh
Q 013203 336 AEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKL 378 (447)
Q Consensus 336 ~~l~E~er~i~DAl~~~k~a~~~-gvVpGGGa~e~~~s~~L~~~ 378 (447)
..++|++|+++--..-++.++.. .-|+|.|++-.+.+-+|+..
T Consensus 84 ~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~ 127 (140)
T smart00574 84 SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTI 127 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 36788888888887777777666 47899999988888777643
No 51
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=37.28 E-value=14 Score=39.86 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=49.3
Q ss_pred hcCCCEEEEecCcch-----hHHHHHHHhccCCC----CceEEEeccCcccchhhhHHHHHHHhCCEEeeC
Q 013203 195 MQGQSLLVVAEDVEN-----EVLGDIATDFTCTT----EKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTG 256 (447)
Q Consensus 195 ~~~~~lvii~~~i~~-----~al~~l~~n~~~~~----~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~ 256 (447)
+...|+.|..+++++ +++..++.|+.++. .++++++.| +++.+...|++....++.++...
T Consensus 245 ~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~ 314 (522)
T TIGR02345 245 AEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDE 314 (522)
T ss_pred ccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHH
Confidence 344588889999998 88888888887653 388999888 99999999999999888876553
No 52
>PRK06683 hypothetical protein; Provisional
Probab=32.43 E-value=1.2e+02 Score=24.17 Aligned_cols=53 Identities=19% Similarity=0.113 Sum_probs=32.7
Q ss_pred HHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCE
Q 013203 190 SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (447)
Q Consensus 190 le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~ 252 (447)
++.+.+..+.+||+++|.++...+.+..- ...++|-.+..+ ..++|..+||-.
T Consensus 20 ~kaik~gkaklViiA~Da~~~~~~~i~~~--~~~~~Vpv~~~~--------t~~eLG~A~G~~ 72 (82)
T PRK06683 20 LEAIKNGIVKEVVIAEDADMRLTHVIIRT--ALQHNIPITKVE--------SVRKLGKVAGIQ 72 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHHH--HHhcCCCEEEEC--------CHHHHHHHhCCc
Confidence 44555555789999999999877655411 111334444432 256888888854
No 53
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=31.32 E-value=1.6e+02 Score=23.31 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=39.3
Q ss_pred HHHHHHHhcCCCEEEEec-CcchhHHHHHHHhccCCCCceEEEeccC-cccchhhhHHHHHHHhCCEEeeC
Q 013203 188 QASLPCMMQGQSLLVVAE-DVENEVLGDIATDFTCTTEKVCIIKAAG-LAEDRKAIMEDLAILTGGQVLTG 256 (447)
Q Consensus 188 ~~le~i~~~~~~lvii~~-~i~~~al~~l~~n~~~~~~~i~avk~~~-~g~~r~~~le~la~~tGa~i~~~ 256 (447)
..|......-.|++.+.+ ++++..+..+-..-.. -.++=||... ..+.+++..+.|+..|||.++..
T Consensus 7 ~~Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~--~eLvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~ 75 (84)
T PF01985_consen 7 KFLRKLAHHLKPVVQIGKNGLTDGVIEEIDDALEK--HELVKVKVLGNCREDRKEIAEQLAEKTGAEVVQV 75 (84)
T ss_dssp HHHHHHHTTC--SEEE-TTSS-HHHHHHHHHHHHH--HSEEEEEETT--HHHHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHh--CCeeEEEEccCCHHHHHHHHHHHHHHhCCEEEEE
Confidence 345555555578888876 8999877755432111 1355555543 22335677888999999999874
No 54
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=29.45 E-value=66 Score=28.39 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CcCChhHHHHHHHHHHHHh
Q 013203 337 EVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKL 378 (447)
Q Consensus 337 ~l~E~er~i~DAl~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~ 378 (447)
.|+|++|+++--..=++..+..- -|.|.|++-.+.+-+|+..
T Consensus 85 mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqam 127 (140)
T PF07526_consen 85 MLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAM 127 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 56788888777777777666653 7899999998888777643
No 55
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=28.57 E-value=2.7e+02 Score=23.01 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCCEEEEec-CcchhHHHHHHHhccCCCCceEEEecc-CcccchhhhHHHHHHHhCCEEeeC
Q 013203 187 RQASLPCMMQGQSLLVVAE-DVENEVLGDIATDFTCTTEKVCIIKAA-GLAEDRKAIMEDLAILTGGQVLTG 256 (447)
Q Consensus 187 ~~~le~i~~~~~~lvii~~-~i~~~al~~l~~n~~~~~~~i~avk~~-~~g~~r~~~le~la~~tGa~i~~~ 256 (447)
..+|......=.|+|.+.+ |+++.++..+-..-.. ...+=||.. ...+.+++..+.||..||+.++..
T Consensus 8 r~~LR~~ah~l~Pvv~IGk~Glt~~vi~ei~~aL~~--hELIKvkv~~~~~~~~~e~~~~i~~~~~ae~Vq~ 77 (97)
T PRK10343 8 KQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEH--HELIKVKIATEDRETKTLIVEAIVRETGACNVQV 77 (97)
T ss_pred HHHHHHhcCCCCCeEEECCCCCCHHHHHHHHHHHHH--CCcEEEEecCCChhHHHHHHHHHHHHHCCEEEee
Confidence 3456666555579998875 8999888755422111 123333332 223446778899999999998863
No 56
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=28.41 E-value=83 Score=26.90 Aligned_cols=61 Identities=18% Similarity=0.067 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCCCCC-CcCCCC
Q 013203 188 QASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFV 266 (447)
Q Consensus 188 ~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~~~~-~~~~~~ 266 (447)
...+.+.++++|++++..+....- -.+++.+++..+|+.++....+- .+.+-.
T Consensus 3 ~~~~~L~~A~rP~il~G~g~~~~~--------------------------a~~~l~~lae~~~~Pv~~t~~~kg~i~~~h 56 (137)
T PF00205_consen 3 EAADLLSSAKRPVILAGRGARRSG--------------------------AAEELRELAEKLGIPVATTPMGKGVIPEDH 56 (137)
T ss_dssp HHHHHHHH-SSEEEEE-HHHHHTT--------------------------CHHHHHHHHHHHTSEEEEEGGGTTSSTTTS
T ss_pred HHHHHHHhCCCEEEEEcCCcChhh--------------------------HHHHHHHHHHHHCCCEEecCccccccCCCC
Confidence 345666778889888775442210 12458899999999998765332 233334
Q ss_pred CCCceeee
Q 013203 267 PLKLGSCK 274 (447)
Q Consensus 267 ~~~LG~a~ 274 (447)
|-++|..+
T Consensus 57 p~~~G~~g 64 (137)
T PF00205_consen 57 PLFLGYLG 64 (137)
T ss_dssp TTEEEESC
T ss_pred chhcccCC
Confidence 55566443
No 57
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=27.59 E-value=1.6e+02 Score=23.40 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=31.6
Q ss_pred HHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCE
Q 013203 190 SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (447)
Q Consensus 190 le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~ 252 (447)
++.+.+..+.|||++.|.++.....+.. .....+|-.+... ..++|..++|-.
T Consensus 17 lkaIk~gkakLViiA~Da~~~~~k~i~~--~c~~~~Vpv~~~~--------t~~eLG~A~G~~ 69 (82)
T PRK13601 17 LKAITNCNVLQVYIAKDAEEHVTKKIKE--LCEEKSIKIVYID--------TMKELGVMCGID 69 (82)
T ss_pred HHHHHcCCeeEEEEeCCCCHHHHHHHHH--HHHhCCCCEEEeC--------CHHHHHHHHCCc
Confidence 4555555678999999999877665542 1111233333221 256888888853
No 58
>PRK11058 GTPase HflX; Provisional
Probab=27.25 E-value=1.9e+02 Score=30.34 Aligned_cols=113 Identities=18% Similarity=0.201 Sum_probs=60.6
Q ss_pred hhhhHHHHHHHhCCEEeeCCCCCCcCCCC-CCCceeeeEEEE------ecceEEEEeCCCChhhHHHHHHHHHHHhh---
Q 013203 238 RKAIMEDLAILTGGQVLTGGSGMNSTYFV-PLKLGSCKRVIA------TMDNVVIIGGSGELVDIQERCEQLRSTIK--- 307 (447)
Q Consensus 238 r~~~le~la~~tGa~i~~~~~~~~~~~~~-~~~LG~a~~v~i------~~~~~~~i~g~~~~~~i~~r~~~l~~~~~--- 307 (447)
.-++|+.||.++|..++....- +.+.++ ..++|+-+--++ .+-.+++|.+.-.|.+ ...|++.+.
T Consensus 26 ~~~El~~L~~~~g~~v~~~~~q-~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~lsp~q----~~nle~~~~~~v 100 (426)
T PRK11058 26 DLQEFESLVSSAGVEALQVITG-SRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDHALSPAQ----ERNLERLCECRV 100 (426)
T ss_pred hHHHHHHHHHHCCCEEEEEEEE-ecCCCCCCeeecccHHHHHHHHHHhcCCCEEEECCCCCHHH----HHHHHHHHCCeE
Confidence 3567888999999888764211 011222 234665331121 2335666665545532 334444321
Q ss_pred -------------hccc---------HHHH----------HHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHH
Q 013203 308 -------------LSTS---------DKLK----------DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (447)
Q Consensus 308 -------------~~~~---------~~l~----------eR~a~l~g~~atI~v~G~t~~~l~E~er~i~DAl~~~k~a 355 (447)
++.+ .+|+ ..++|..|++.+ ||+.+..++--+|.+.+=+..++..
T Consensus 101 ~DR~~lil~IF~~rA~t~e~klqvelA~l~y~~prl~~~~~~l~~~~gg~g~---~g~ge~~~e~d~r~i~~ri~~l~~~ 177 (426)
T PRK11058 101 IDRTGLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGL---RGPGETQLETDRRLLRNRIVQILSR 177 (426)
T ss_pred ecchhHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhccccchhhhcCCCCC---CCCChhHhHHHHHHHHHHHHHHHHH
Confidence 1111 2222 345555666553 8888888877667777666666655
Q ss_pred Hhc
Q 013203 356 KEE 358 (447)
Q Consensus 356 ~~~ 358 (447)
++.
T Consensus 178 L~~ 180 (426)
T PRK11058 178 LER 180 (426)
T ss_pred HHH
Confidence 543
No 59
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=25.42 E-value=1.8e+02 Score=22.98 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=30.3
Q ss_pred HHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCE
Q 013203 190 SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (447)
Q Consensus 190 le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~ 252 (447)
++.+.+..+.+||+++|.++.....+.. +....+|-.+..+ ..++|..++|-.
T Consensus 20 ~kai~~gkaklViiA~D~~~~~~~~i~~--~c~~~~Vp~~~~~--------s~~eLG~a~G~~ 72 (82)
T PRK13602 20 VKALKRGSVKEVVVAEDADPRLTEKVEA--LANEKGVPVSKVD--------SMKKLGKACGIE 72 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHH--HHHHcCCCEEEEC--------CHHHHHHHHCCC
Confidence 4445455578999999999975543321 0111233344432 246788888843
No 60
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=24.91 E-value=96 Score=23.83 Aligned_cols=32 Identities=38% Similarity=0.635 Sum_probs=22.9
Q ss_pred eccCcHHHHHHHHHHHHHHHHHHHHHHhcCCcCChhHHH
Q 013203 330 VCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVAL 368 (447)
Q Consensus 330 v~G~t~~~l~E~er~i~DAl~~~k~a~~~gvVpGGGa~e 368 (447)
|.|.|+.++ |.-|.||+..- ++..+||=|+.+
T Consensus 13 v~g~s~eel---~~~I~daIqsg----EEk~LPGLGVlF 44 (68)
T PRK02955 13 VSGNSKEEL---EGTIVDAIQSG----EEKMLPGLGVLF 44 (68)
T ss_pred ccCCCHHHH---HHHHHHHHhcc----chhcCCcchhHH
Confidence 667888555 55788887543 356999999865
No 61
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=24.52 E-value=38 Score=35.86 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhcCCcCChhHHHHHHHHHHHHhcC
Q 013203 342 KLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT 380 (447)
Q Consensus 342 er~i~DAl~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~ 380 (447)
+|.+.||+..+|++.+.=+|.|||+-+-.+...|..|..
T Consensus 216 ~~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~E 254 (617)
T COG3962 216 ERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAE 254 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHHH
Confidence 356788999999986666999999998888888887763
No 62
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=22.84 E-value=1.1e+02 Score=26.99 Aligned_cols=42 Identities=17% Similarity=0.099 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeCC
Q 013203 187 RQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGG 257 (447)
Q Consensus 187 ~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~~ 257 (447)
-+.++.+.+.|+|++| +-|+.+.. +..+.|+.++||.++...
T Consensus 66 ~evi~~I~~~G~PviV-AtDV~p~P----------------------------~~V~Kia~~f~A~ly~P~ 107 (138)
T PF04312_consen 66 SEVIEWISEYGKPVIV-ATDVSPPP----------------------------ETVKKIARSFNAVLYTPE 107 (138)
T ss_pred HHHHHHHHHcCCEEEE-EecCCCCc----------------------------HHHHHHHHHhCCcccCCC
Confidence 3557788899999765 44444432 246789999999988864
No 63
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=21.93 E-value=2.5e+02 Score=20.97 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=31.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHH
Q 013203 64 ANLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKV 118 (447)
Q Consensus 64 ~~P~~I~~G~~~A~~~~~~~L~~~~~~v~~~~~l~~va~ts~~~~~~l~~li~~A 118 (447)
.+|.++++.++.|-..+--=++-.-+|+.+.++...++...+ ..+-.+.++|
T Consensus 4 asPv~LR~~lE~A~~La~~GIRFVpiPv~~dee~~~L~s~~~---~kLe~ma~~a 55 (61)
T PF07131_consen 4 ASPVDLRKALEMAHSLAHIGIRFVPIPVVTDEEFHTLSSQLS---QKLERMAAEA 55 (61)
T ss_pred ccHHHHHHHHHHHHHHHHcCceeeccccccHHHHHHHHHHHH---HHHHHHHHHH
Confidence 579999888888864443222333367777777776654333 2455554444
No 64
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=21.35 E-value=99 Score=27.98 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=30.3
Q ss_pred eecCcEEEEeccccC-----CHHHHHHHHHHHHhcCCCEEEEecCcc
Q 013203 167 VLDGALVLIYDTKIS-----NSNVIRQASLPCMMQGQSLLVVAEDVE 208 (447)
Q Consensus 167 ~l~~p~Il~~d~~i~-----~~~~~~~~le~i~~~~~~lvii~~~i~ 208 (447)
-+.+|.++++|.+.. +.+.+.++++...+.|..++++.-+.+
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 142 VAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 456899999998743 335677788877777888888776553
No 65
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.78 E-value=2.5e+02 Score=27.06 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeC
Q 013203 183 SNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTG 256 (447)
Q Consensus 183 ~~~~~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~ 256 (447)
.+++.++.+.+.+.| +.+++--+|.+++..|.. +++-++|.+|..-.-...|+.+|. ||-.++-+
T Consensus 55 ~e~~~~L~~~~~~~g--i~f~stpfd~~s~d~l~~------~~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlS 119 (241)
T PF03102_consen 55 EEQHKELFEYCKELG--IDFFSTPFDEESVDFLEE------LGVPAYKIASGDLTNLPLLEYIAK-TGKPVILS 119 (241)
T ss_dssp HHHHHHHHHHHHHTT---EEEEEE-SHHHHHHHHH------HT-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE
T ss_pred HHHHHHHHHHHHHcC--CEEEECCCCHHHHHHHHH------cCCCEEEeccccccCHHHHHHHHH-hCCcEEEE
Confidence 456777788887777 667777888999987754 356789998755445567888887 88777654
No 66
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=20.31 E-value=98 Score=30.12 Aligned_cols=27 Identities=11% Similarity=0.227 Sum_probs=24.6
Q ss_pred EEEEeccCcHHHHHHHHHHHHHHHHHHH
Q 013203 326 AVLKVCGHGKAEVREKKLKITNALHAVQ 353 (447)
Q Consensus 326 atI~v~G~t~~~l~E~er~i~DAl~~~k 353 (447)
-||+|+| ++..+++.+|.++|-+++.+
T Consensus 121 mTIVl~G-td~VveQa~rQiedlVnV~a 147 (309)
T KOG2663|consen 121 MTIVLQG-TDGVVEQARRQIEDLVNVYA 147 (309)
T ss_pred ceEEEec-cHHHHHHHHHHHHHhhhhhe
Confidence 4999998 78889999999999999985
No 67
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=20.02 E-value=4.9e+02 Score=21.30 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCCEEEEec-CcchhHHHHHHHhcc-CCCCceEEEeccCcccchhhhHHHHHHHhCCEEeeC
Q 013203 188 QASLPCMMQGQSLLVVAE-DVENEVLGDIATDFT-CTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTG 256 (447)
Q Consensus 188 ~~le~i~~~~~~lvii~~-~i~~~al~~l~~n~~-~~~~~i~avk~~~~g~~r~~~le~la~~tGa~i~~~ 256 (447)
.+|......=.|++.+.+ ++++.++..+-..-. +..++|=..+ ...+.+++..+.||..|||.++..
T Consensus 7 ~~Lr~~ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~--~~~~~~~e~a~~i~~~~~a~~Vq~ 75 (95)
T TIGR00253 7 RHLRGKAHHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVAT--EDREDKTLIAEALVKETGACNVQV 75 (95)
T ss_pred HHHHHHhCCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecC--CChhHHHHHHHHHHHHHCCEEEEE
Confidence 455555545578898875 899988875553211 1112333322 123446678899999999998863
Done!