BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013204
(447 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 349 bits (895), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 162/417 (38%), Positives = 252/417 (60%), Gaps = 2/417 (0%)
Query: 17 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTT 76
+V+ EG Y+ DVNG++YLD+ +GLW G L+ AA AQ P YH+F+ R +
Sbjct: 45 VVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMS 104
Query: 77 KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKS 136
++ L+++L+E+ + +VF+TNSGSEANDT VK++W+ + A G+P K+K + R +
Sbjct: 105 DQTVMLSEKLVEV-SPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNA 163
Query: 137 YHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDL 196
YHG T ++AS++G P + F LP P +H CPHYWRY GETEE++ RLA LE+
Sbjct: 164 YHGVTAVSASMTGKP-YNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEET 222
Query: 197 ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTM 256
I +EG +TIA F AE YF+ + +++KYDI I+DEVIC FGR G
Sbjct: 223 IQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNT 282
Query: 257 FGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPV 316
+GC Y PD + +K L++ + P+GA+++ PE+S+ + + + F HGFT SGHPV
Sbjct: 283 WGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPV 342
Query: 317 SCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKS 376
CA+A++A+ + + E V ++AP+F++ +K ++ P IGE RG G + E +K+
Sbjct: 343 GCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKA 402
Query: 377 PNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKAL 433
PF + C G++ R G ++++ PPFI++ ++DE+ K KAL
Sbjct: 403 SKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQMDEMFDKLEKAL 459
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 347 bits (891), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 161/417 (38%), Positives = 250/417 (59%), Gaps = 2/417 (0%)
Query: 17 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTT 76
+V+ EG Y+ DV+G++YLD+ +GLW G L+ AA AQ + P YH+F+ R +
Sbjct: 43 VVVTHGEGPYIVDVHGRRYLDANSGLWNMVAGFDHKGLIEAAKAQYDRFPGYHAFFGRMS 102
Query: 77 KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKS 136
++ L+++L+E+ + +VF+TNSGSEANDT VK++W+ + A G+P K+K + R +
Sbjct: 103 DQTVMLSEKLVEV-SPFDNGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNA 161
Query: 137 YHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDL 196
YHG T ++AS++G P + F LP P +H CPHYWRY GETE ++ RLA LED
Sbjct: 162 YHGVTAVSASMTGKP-YNSVFGLPLPGFIHLTCPHYWRYGEEGETEAQFVARLARELEDT 220
Query: 197 ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTM 256
I +EG +TIA F AE YF+ + +++KYDI I+DEVIC FGR G
Sbjct: 221 ITREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVICGFGRTGNT 280
Query: 257 FGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPV 316
+GC Y PD + + L++ + P+GA+++ P++++ + + + F HGFT SGHPV
Sbjct: 281 WGCLTYDFMPDAIISSXNLTAGFFPMGAVILGPDLAKRVEAAVEAIEEFPHGFTASGHPV 340
Query: 317 SCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKS 376
CA+A++A+ + + E V ++AP+F+ G+K +D P IGE RG G + E +K
Sbjct: 341 GCAIALKAIDVVMNEGLAENVRRLAPRFEAGLKRIADRPNIGEYRGIGFMWALEAVKDKP 400
Query: 377 PNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKAL 433
PF + C G++ R G +I++ PPFI++ ++DE+ K KAL
Sbjct: 401 TKTPFDANLSVSERIANTCTDLGLICRPLGQSIVLCPPFILTEAQMDEMFEKLEKAL 457
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 342 bits (876), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 163/417 (39%), Positives = 247/417 (59%), Gaps = 2/417 (0%)
Query: 17 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTT 76
+V+ EG Y+ DVNG++YLD+ +GLW G L+ AA AQ P YH+F+ R +
Sbjct: 51 VVVTHGEGPYIVDVNGRRYLDANSGLWNXVAGFDHKGLIDAAKAQYERFPGYHAFFGRXS 110
Query: 77 KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKS 136
++ L+++L+E+ + +VF+TNSGSEANDT VK +W+ + A G+P K+K + R +
Sbjct: 111 DQTVXLSEKLVEV-SPFDSGRVFYTNSGSEANDTXVKXLWFLHAAEGKPQKRKILTRWNA 169
Query: 137 YHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDL 196
YHG T ++AS +G P + F LP P +H CPHYWRY GETEE++ RLA LE+
Sbjct: 170 YHGVTAVSASXTGKP-YNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEET 228
Query: 197 ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTM 256
I +EG +TIA F AE YF+ + +++KYDI I+DEVIC FGR G
Sbjct: 229 IQREGADTIAGFFAEPVXGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNT 288
Query: 257 FGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPV 316
+GC Y PD + +K L++ + P GA+++ PE+S+ + + + F HGFT SGHPV
Sbjct: 289 WGCVTYDFTPDAIISSKNLTAGFFPXGAVILGPELSKRLETAIEAIEEFPHGFTASGHPV 348
Query: 317 SCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKS 376
CA+A++A+ + + E V ++AP+F++ +K ++ P IGE RG G E +K+
Sbjct: 349 GCAIALKAIDVVXNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFXWALEAVKDKA 408
Query: 377 PNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKAL 433
PF + C G++ R G ++++ PPFI++ + DE K KAL
Sbjct: 409 SKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQXDEXFDKLEKAL 465
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 335 bits (860), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 156/417 (37%), Positives = 250/417 (59%), Gaps = 2/417 (0%)
Query: 17 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTT 76
+V+ EG Y+ DVNG++YLD+ +GL+ G L+ AA AQ P YH+ + + +
Sbjct: 51 VVVTHGEGPYIVDVNGRRYLDANSGLFNMVAGFDHKGLIDAAKAQYERFPGYHAAFGKMS 110
Query: 77 KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKS 136
++ L+++L+E+ + +VF+TNSGSEANDT VK++W+ + A G+P K+K + R +
Sbjct: 111 DQTVMLSEKLVEV-SPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNA 169
Query: 137 YHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDL 196
YHG+T ++AS++G P + F LP P +H CPHYWRY GETEE++ RLA LE+
Sbjct: 170 YHGATAVSASMTGFP-YNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEET 228
Query: 197 ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTM 256
I +EG +TIA F AE YF+ + +++KYDI I+DEV+C FGR G
Sbjct: 229 IQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVVCGFGRTGNT 288
Query: 257 FGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPV 316
+GC Y PD + + L++ + P+GA+++ PE+S+ + + + F HGFT SGHPV
Sbjct: 289 WGCVTYDFTPDAIISSXNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPV 348
Query: 317 SCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKS 376
CA+A++A+ + + E V ++AP+F++ +K ++ P IGE RG G + E +K+
Sbjct: 349 GCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKA 408
Query: 377 PNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKAL 433
PF + C G++ G ++++ PPFI++ ++DE+ K KAL
Sbjct: 409 SKTPFDGNLSVSERIANTCTDLGLICFPLGQSVVLCPPFILTEAQMDEMFDKLEKAL 465
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 326 bits (835), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 167/419 (39%), Positives = 243/419 (57%), Gaps = 5/419 (1%)
Query: 22 SEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLD 81
EG V+D NG+K +D+ AGL+C +G ++ A Q L +YH++ T+ S+
Sbjct: 40 GEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASIT 99
Query: 82 LAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGST 141
LAK +++ ++V+F SGS+AN+T +KL+WYYNN LGRP KKK I+R + YHGS
Sbjct: 100 LAKXIIDR-APKGXSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSG 158
Query: 142 LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 201
+ SL+GL H FDLP VLHT+ P+Y+R +EE++S A+ LE+ IL EG
Sbjct: 159 VXTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSXSEEQFSQHCADKLEEXILAEG 218
Query: 202 PETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDK 261
PETIAAFI E Y+EK+QAV+KKYD+L +ADEV+ FGRLGT FG D
Sbjct: 219 PETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTXFGSDH 278
Query: 262 YSIKPDLVSFA-KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320
Y IKPDL++ A K L+SAY P+ ++V+ V +V+ S+ LGS HG+TYS HP+ A
Sbjct: 279 YGIKPDLITIAXKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAA 338
Query: 321 AIEALKIYKERNIVEQVNKIAPKFQ-DGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNE 379
+ L++ E ++V + F+ + KA +GE+RG G + EF +K
Sbjct: 339 GVANLELIDEXDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGXLAAVEFVADKDDRV 398
Query: 380 PFPPEWGIGAYFGAQCEKHGMLVRV--SGDNIMMSPPFIMSPEEVDELISKYGKALKAT 436
F IG G++ R GD + +PP ++ E+ D ++SK A+K+
Sbjct: 399 FFDASQKIGPQVATALAASGVIGRAXPQGDILGFAPPLCLTREQADIVVSKTADAVKSV 457
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 309 bits (791), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 161/424 (37%), Positives = 241/424 (56%), Gaps = 6/424 (1%)
Query: 18 VIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTK 77
VI+ + G ++ D +G K LD+ AGL+C +G + A Q L +YHS+ T+
Sbjct: 35 VIKTASGVFIEDRDGTKLLDAFAGLYCVNVGYGRQEIAEAIADQARELAYYHSYVGHGTE 94
Query: 78 PSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSY 137
S+ LAK +L+ +KV+F GS+AN+T VKL+WYYNN LGRP KKK I+R + Y
Sbjct: 95 ASITLAKXILDR-APKNXSKVYFGLGGSDANETNVKLIWYYNNILGRPEKKKIISRWRGY 153
Query: 138 HGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLI 197
HGS L+ SL+GL H+KFDLP V+HT+ P+Y+R +TEE++ LE LI
Sbjct: 154 HGSGLVTGSLTGLELFHKKFDLPVEQVIHTEAPYYFRREDLNQTEEQFVAHCVAELEALI 213
Query: 198 LKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTMF 257
+EG +TIAAFI E Y+E +Q V+ K+DIL +ADEV+ FGRLGT F
Sbjct: 214 EREGADTIAAFIGEPILGTGGIVPPPAGYWEAIQTVLNKHDILLVADEVVTGFGRLGTXF 273
Query: 258 GCDKYSIKPDLVSFA-KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPV 316
G D Y ++PD+++ A K L+SAY P+ +VS +V +V+ ++ G HG+TYS HP+
Sbjct: 274 GSDHYGLEPDIITIAXKGLTSAYAPLSGSIVSDKVWKVLEQGTDENGPIGHGWTYSAHPI 333
Query: 317 SCAVAIEALKIYKERNIVEQVNKIAPKFQ-DGVKAFSDSPIIGEIRGTGLILGTEFADNK 375
A + LK+ E N+V ++ +A S +G++RG GL+ EF ++
Sbjct: 334 GAAAGVANLKLLDELNLVSNAGEVGAYLNATXAEALSQHANVGDVRGEGLLCAVEFVKDR 393
Query: 376 SPNEPFPPEWGIGAYFGAQ-CEKHGMLVRV--SGDNIMMSPPFIMSPEEVDELISKYGKA 432
F IG A+ E+ ++ R GD + +PPF ++ E D+++ +A
Sbjct: 394 DSRTFFDAADKIGPQISAKLLEQDKIIARAXPQGDILGFAPPFCLTRAEADQVVEGTLRA 453
Query: 433 LKAT 436
+KA
Sbjct: 454 VKAV 457
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 302 bits (774), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 161/444 (36%), Positives = 255/444 (57%), Gaps = 12/444 (2%)
Query: 2 LAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQ 61
L PF+A + VI ++ G ++ D G++ LD++AGLWC +G L A Q
Sbjct: 24 LHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQ 83
Query: 62 LNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNA 121
+ LP+Y++F+ T P++ LA++L E+ + VFF GSEANDT +++V Y
Sbjct: 84 MRELPYYNTFFKTTHVPAIALAQKLAEL-APGDLNHVFFAGGGSEANDTNIRMVRTYWQN 142
Query: 122 LGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 181
G+P K I+R+ +YHGST+ +++L G+ +H + L P V H + P++W A G+
Sbjct: 143 KGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGL-IPDVHHINQPNWW--AEGGDM 199
Query: 182 E-EEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDIL 240
+ EE+ A LE+ IL+ G +AAFIAE +Y+ ++Q + KYDIL
Sbjct: 200 DPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDIL 259
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
IADEVIC FGR G FG I+P +++ AK LSS Y PIG +V EV+ VI
Sbjct: 260 LIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKD-- 317
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKI-APKFQDGVKAFSDSPIIGE 359
F+HG+TYSGHPV+ AVA+E L+I +E NI++ V + AP ++ +A +D P++GE
Sbjct: 318 ---EFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGE 374
Query: 360 IRGTGLILGTEFADNKSPNEPFPPEWG-IGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMS 418
+ G++ NK+ F E G IG +C + +++R GD +++SPP +++
Sbjct: 375 AKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVGDRMIISPPLVIT 434
Query: 419 PEEVDELISKYGKALKATEERVKE 442
P E+DE+ + K+L + +++
Sbjct: 435 PAEIDEMFVRIRKSLDEAQAEIEK 458
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 289 bits (740), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 162/443 (36%), Positives = 247/443 (55%), Gaps = 10/443 (2%)
Query: 2 LAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQ 61
L PFT V+ + EG Y++D G K +D +AGLWC +G AA Q
Sbjct: 19 LHPFTDTASLNQAGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQ 78
Query: 62 LNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNA 121
+ LPFY++F+ +TT P++ LL T + +VF+TNSGSE+ DT +++V Y +
Sbjct: 79 MEELPFYNTFF-KTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDV 137
Query: 122 LGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE- 180
G+P KK I R YHGST+ ASL G+ +H++ DLP P + H + P W Y H +
Sbjct: 138 QGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQP--WWYKHGKDM 195
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDIL 240
T +E+ A LE+ IL+ G + +AAF+ E TY+ +++ + +KYD+L
Sbjct: 196 TPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVL 255
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
+ADEVIC FGR G FG + +PDL + AK LSS Y+PIGA+ V V+E + +
Sbjct: 256 LVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAG-- 313
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQV-NKIAPKFQDGVK-AFSDSPIIG 358
G F+HGFTYSGHPV AVA + ++ IV++V + I P Q + FS +
Sbjct: 314 --GDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVD 371
Query: 359 EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMS 418
++RG G++ NK+ E FP IG ++ +++R GD+I+ +PP +M+
Sbjct: 372 DVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACGDHIVSAPPLVMT 431
Query: 419 PEEVDELISKYGKALKATEERVK 441
EVDE+++ + L+ E+ +K
Sbjct: 432 RAEVDEMLAVAERCLEEFEQTLK 454
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 242 bits (618), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/423 (32%), Positives = 225/423 (53%), Gaps = 17/423 (4%)
Query: 18 VIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTK 77
V+ +EG YV+ +G++ +D AG+WC +G +V A Q LP Y S W T
Sbjct: 39 VLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLP-YASPWYMATS 97
Query: 78 PSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSY 137
P+ LA E + T + ++FFT GS A D+ ++ +YNN LGRP KK+ I R Y
Sbjct: 98 PAARLA-EKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGY 156
Query: 138 HGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLI 197
HGST + A+ +G FD+ + P+ R+A ++E + L ED I
Sbjct: 157 HGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNP-RHAG-NRSQEAFLDDLVQEFEDRI 214
Query: 198 LKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTMF 257
GP+TIAAF+AE Y + +A+ +K+DIL+I+DEV+ FGR G F
Sbjct: 215 ESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWF 274
Query: 258 GCDK-YSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPV 316
+K + + PD+++FAK ++S Y+P+G + +S V I ++ F++G+TYS PV
Sbjct: 275 ASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPV 334
Query: 317 SCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLI------LGTE 370
+CA A+ +++ + IV+Q ++A F + + D P + E R GL+ L
Sbjct: 335 ACAAALANIELMEREGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPT 394
Query: 371 FADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYG 430
AD + ++ F + +C + G++VR GD ++SPP I+S ++DE+++
Sbjct: 395 RADGTAEDKAFTLK------IDERCFELGLIVRPLGDLCVISPPLIISRAQIDEMVAIMR 448
Query: 431 KAL 433
+A+
Sbjct: 449 QAI 451
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/439 (30%), Positives = 221/439 (50%), Gaps = 23/439 (5%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 63
PFT + D +PL+IE G V D+NGK+Y D + +W G + L A QL
Sbjct: 16 PFTQ-MKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLG 74
Query: 64 TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 123
+ + + T P+ LA+ L+++ + K+ +VF+++SG+EA + +K+ + Y +G
Sbjct: 75 KIA-HSTLLGMTNVPATQLAETLIDI-SPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIG 132
Query: 124 RPNKKKFIARQKSYHGSTLIAASLSGL--------PALHQKFDLPAPFVLHTDCPHYWRY 175
+P K+KFIA + YHG T+ A S+ + P + + + P P+V ++
Sbjct: 133 KPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSES------ 186
Query: 176 AHPGETEEEYSTRLANNLEDLILKEGPETIAAF-IAEXXXXXXXXXXXXXTYFEKVQAVV 234
P E ++ LA +L+E E IAA I Y V+ +
Sbjct: 187 GDPDECRDQXLRELAQ-----LLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELC 241
Query: 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEV 294
YD+L I DEV FGR G MF C+ +++PDL++ K ++ Y+PI + ++ +
Sbjct: 242 TTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKA 301
Query: 295 IHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS 354
+ L +F HG +Y+G+ + CAVA+E L +++ NIVEQV + + K ++
Sbjct: 302 FYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHAL 361
Query: 355 PIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPP 414
P +G+IR G + G E +K EP+P + IG + + GML R GD I PP
Sbjct: 362 PHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLPP 421
Query: 415 FIMSPEEVDELISKYGKAL 433
+ EE+ E+++ +A+
Sbjct: 422 LASTAEELSEMVAIMKQAI 440
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/439 (30%), Positives = 221/439 (50%), Gaps = 23/439 (5%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 63
PFT + D +PL+IE G V D+NGK+Y D + +W G + L A QL
Sbjct: 16 PFTQ-MKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLG 74
Query: 64 TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 123
+ + + T P+ LA+ L+++ + K+ +VF+++SG+EA + +K+ + Y +G
Sbjct: 75 KIA-HSTLLGMTNVPATQLAETLIDI-SPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIG 132
Query: 124 RPNKKKFIARQKSYHGSTLIAASLSGL--------PALHQKFDLPAPFVLHTDCPHYWRY 175
+P K+KFIA + YHG T+ A S+ + P + + + P P+V ++
Sbjct: 133 KPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSES------ 186
Query: 176 AHPGETEEEYSTRLANNLEDLILKEGPETIAAF-IAEXXXXXXXXXXXXXTYFEKVQAVV 234
P E ++ LA +L+E E IAA I Y V+ +
Sbjct: 187 GDPDECRDQCLRELAQ-----LLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELC 241
Query: 235 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEV 294
YD+L I DEV FGR G MF C+ +++PDL++ K ++ Y+PI + ++ +
Sbjct: 242 TTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKA 301
Query: 295 IHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS 354
+ L +F HG +Y+G+ + CAVA+E L +++ NIVEQV + + K ++
Sbjct: 302 FYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHAL 361
Query: 355 PIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPP 414
P +G+IR G + G E +K EP+P + IG + + GML R GD I PP
Sbjct: 362 PHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLPP 421
Query: 415 FIMSPEEVDELISKYGKAL 433
+ EE+ E+++ +A+
Sbjct: 422 LASTAEELSEMVAIMKQAI 440
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 226 bits (577), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/429 (32%), Positives = 228/429 (53%), Gaps = 22/429 (5%)
Query: 21 KSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80
K+EG +V D+ GK+YLD +GLWC G L AA QL TL ++ +++ +P++
Sbjct: 37 KAEGCWVEDIQGKRYLDGXSGLWCVNSGYGRKELAEAAYKQLQTLSYFPX--SQSHEPAI 94
Query: 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGS 140
LA++L E + +FF+NSGSEAN+T K+ Y G P++ KF +R + YHG+
Sbjct: 95 KLAEKLNEWLGGEYV--IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFXSRYRGYHGN 152
Query: 141 TLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPG-ETEEEYSTRLANNLEDLILK 199
T + +G +++ A LH P +R PG E E Y ++ +
Sbjct: 153 TXATXAATGQAQRRYQYEPFASGFLHVTPPDCYR--XPGIERENIYDVECVKEVDRVXTW 210
Query: 200 EGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGC 259
E ETIAAFI E Y + V +K+ L I+DEVIC FGR G FG
Sbjct: 211 ELSETIAAFIXEPIITGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAFGF 270
Query: 260 DKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCA 319
Y +KPD+++ AK ++SAY+P+ A V E+ E + F H T+ G+P +CA
Sbjct: 271 XNYDVKPDIITXAKGITSAYLPLSATAVKREIYEAFKGKGE-YEFFRHINTFGGNPAACA 329
Query: 320 VAIEALKIYKERNIVEQVNKIAPKFQDGVK-AFSDSPIIGEIRGTGLILGTEFADNKSPN 378
+A++ L+I + N++E+ + + +K + P++G+IRG GL++G E ++K
Sbjct: 330 LALKNLEIIENENLIERSAQXGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETK 389
Query: 379 EPFPPEWGIGAYFGAQCEKHGMLVRVSG------DNIM-MSPPFIMSPEEVDELISKYGK 431
EP + I + A C++ G+++ +G +NI+ ++PP ++S EE+ +I
Sbjct: 390 EPIDND-KIASVVNA-CKEKGLIIGRNGXTTAGYNNILTLAPPLVISSEEIAFVIG---- 443
Query: 432 ALKATEERV 440
LK ER+
Sbjct: 444 TLKTAXERI 452
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 131/422 (31%), Positives = 203/422 (48%), Gaps = 12/422 (2%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
P +I +EGS++ D G+K DSL+GLW G + + A QL+TL + F +
Sbjct: 33 PRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGF--QY 90
Query: 76 TKP-SLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
P S LA+++ ++ T + VFFT+SGSE T VK+V Y G+ K K I R
Sbjct: 91 GHPLSFQLAEKITDL-TPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRA 149
Query: 135 KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLE 194
+ YHG + SL G+ + F P V H A+ +E LA+ L
Sbjct: 150 RGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELL 209
Query: 195 DLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLG 254
LI IAA E Y ++ + + +++IL + DEVI FGR G
Sbjct: 210 KLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG 269
Query: 255 TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNT--LGSFSHGFTYS 312
+MFG D + + PDL+ AK +++ +P+GA++ S E+ + +Q F HG+TYS
Sbjct: 270 SMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYS 329
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFA 372
HPV+CA + AL + ++ N+V+ V ++AP F+ + + + +IR GL + A
Sbjct: 330 AHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIA 389
Query: 373 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKA 432
P E G+ + K G VR GD + P F P+++D L G+
Sbjct: 390 PRDGDAIVRPFEAGMALW------KAGFYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEV 443
Query: 433 LK 434
L
Sbjct: 444 LN 445
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 172 bits (435), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 125/426 (29%), Positives = 205/426 (48%), Gaps = 27/426 (6%)
Query: 9 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY 68
++S+ +P+ + + EG ++YD G++YLD +G +G + AQ LPF
Sbjct: 6 YRSSKPYPVAV-RGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFV 64
Query: 69 HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128
H ++ + L+ L F + + + GSEA ++ VKL Y+ G P +
Sbjct: 65 HG--SQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRF 122
Query: 129 KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188
K I R SYHG++L + + SG+ A + +L P + P W P
Sbjct: 123 KVITRVPSYHGASLGSLAASGMGA---RRELYTPLMR----PEAWPKL-PKPDPARNGAE 174
Query: 189 LANNLEDLILKEGPETIAAFIAE-XXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVI 247
A L L+ +EGPET+AAF+AE Y+E+V+ + + I+FIADEV+
Sbjct: 175 DAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVM 234
Query: 248 CAFGRLGTMFGCDKYS-IKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFS 306
GR G+ ++S + PD+ K L++ Y P+ +L +P+V E + S G+F
Sbjct: 235 SGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGS---GAFM 291
Query: 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGL 365
HGFTY+GHPVS A + L I + ++ + + G++A P + ++RGTGL
Sbjct: 292 HGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGL 351
Query: 366 ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLV--------RVSGDNIMMSPPFIM 417
+LG D + P GI + GA K G++ GD++++ PP +
Sbjct: 352 LLGVVLGDLATGQAFETP--GIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSI 409
Query: 418 SPEEVD 423
+ EVD
Sbjct: 410 TAAEVD 415
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 126/438 (28%), Positives = 208/438 (47%), Gaps = 47/438 (10%)
Query: 10 QSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALG-GSEPRLVAAATAQLNTLPFY 68
+ ++ PLVI+ EG ++YDV+G KYLD +G+ LG S P ++ Q+ L
Sbjct: 19 RDPELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHA 78
Query: 69 --HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPN 126
+ F+N P L+LAK+L+ + KVFF+NSG+EA + +K+V
Sbjct: 79 AANDFYN---IPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVV-------KNTG 128
Query: 127 KKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWR---YAHPGETE 182
+K IA +HG T + SL+ A+ + P P V+H P+ +R + + E
Sbjct: 129 RKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENP 188
Query: 183 EEYSTRLANNLEDLILKE--GPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDIL 240
E R+ +ED I PE +A E +F ++Q + KKY IL
Sbjct: 189 SELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGIL 248
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
+ DEV GR G +F + ++ PD+++ AKAL MPIGA + ++ SN
Sbjct: 249 LVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLDFKPGMHSN 308
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
T G G+ ++CA+ + + I K+ ++ VN+I F + ++ +D ++
Sbjct: 309 TFG---------GNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQGLAD-----DV 352
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSP 419
RG GL G E+ + K + IG F K G+L+ +G + I + PP ++S
Sbjct: 353 RGIGLAWGLEYNEKKVRDRI------IGESF-----KRGLLLLPAGRSAIRVIPPLVISE 401
Query: 420 EEVDELISKYGKALKATE 437
EE + + K +K +
Sbjct: 402 EEAKQGLDILKKVIKVVK 419
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 122/445 (27%), Positives = 200/445 (44%), Gaps = 49/445 (11%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
M T G + D P+V+++ +G +VYD+ ++Y D L+ G P ++ A
Sbjct: 14 MNNELTYGAHNYDPIPVVLKRGKGVFVYDIEDRRYYDFLSAYSSVNQGHCHPDILNAMIN 73
Query: 61 QLNTLPFY-HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WY 117
Q L +F++ SL + + L KV N+G+EA++T KL W
Sbjct: 74 QAKKLTICSRAFFS----DSLGVCERYLTNLFG--YDKVLMMNTGAEASETAYKLCRKWG 127
Query: 118 YNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAH 177
Y N K I ++ G TL S S F PFV P++ + +
Sbjct: 128 YEVKKIPENSAKIIVCNNNFSGRTLGCVSASTDKKCKNNF---GPFV-----PNFLKVPY 179
Query: 178 PGETEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKY 237
++LE L + + AFI E +YF V ++ KKY
Sbjct: 180 -------------DDLEALEKELQDPNVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKY 226
Query: 238 DILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHS 297
++LF+ADEV GR G + Y +KPD++ KALS + PI AIL + +V V
Sbjct: 227 NVLFVADEVQTGLGRTGKLLCTHHYGVKPDVILLGKALSGGHYPISAILANDDVMLV--- 283
Query: 298 QSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKI-APKFQDGVKAFSDSPI 356
L HG TY G+P++ A+ +EALK+ + E +K+ AP Q+ + DS +
Sbjct: 284 ----LKPGEHGSTYGGNPLAAAICVEALKVLINEKLCENADKLGAPFLQNLKEQLKDSKV 339
Query: 357 IGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VSGDNIMMSPPF 415
+ E+RG GL+ EF ++ W I F +++G++ R V + ++PP
Sbjct: 340 VREVRGKGLLCAIEFKND------LVNVWDICLKF----KENGLITRSVHDKTVRLTPPL 389
Query: 416 IMSPEEVDELISKYGKALKATEERV 440
++ E++DE K +K ++ +
Sbjct: 390 CITKEQLDECTEIIVKTVKFFDDNL 414
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 157 bits (398), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 197/426 (46%), Gaps = 58/426 (13%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS-FWNR 74
P +GS++YD G YLD +G+ LG S PRLV A Q L + FWNR
Sbjct: 11 PATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNR 70
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
P ++LA ELL T KVFF N+G+EAN+ +K+ Y K + ++
Sbjct: 71 ---PQMELA-ELLSKNTFG--GKVFFANTGTEANEAAIKIARKYGKKK-SEKKYRILSAH 123
Query: 135 KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLE 194
S+HG TL + + +G P + F+ P V PG E+ NN+E
Sbjct: 124 NSFHGRTLGSLTATGQPKYQKPFE---PLV-------------PGFEYFEF-----NNVE 162
Query: 195 DLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLG 254
DL K + A F+ E + E+ + + +YD L + DEV C GR G
Sbjct: 163 DLRRKMSEDVCAVFL-EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG 221
Query: 255 TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGH 314
+F KY + PD+++ AK L +PIGA++V + ++N L HG T+ G+
Sbjct: 222 KLFAYQKYGVVPDVLTTAKGLGGG-VPIGAVIV--------NERANVLEPGDHGTTFGGN 272
Query: 315 PVSCAVAIEALKIYKERNIVEQV----NKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTE 370
P++C + +K + +E+V N + K Q+ + + ++ ++RG GL++G +
Sbjct: 273 PLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYD---VVADVRGMGLMIGIQ 329
Query: 371 FADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPEEVDELISKY 429
F + S E +C ++ +LV +G+N I PP + E+D +
Sbjct: 330 FREEVSNRE-----------VATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETL 378
Query: 430 GKALKA 435
K L+
Sbjct: 379 KKVLQG 384
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/433 (26%), Positives = 197/433 (45%), Gaps = 40/433 (9%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 74
P++IE+++GS+VYD +G+ LD +G LG P +V+ L H F
Sbjct: 25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLD--HLFSGM 82
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
++P +DLA L + T + + ++G+E+N+ +++ K + +
Sbjct: 83 LSRPVVDLATRLANI-TPPGLDRALLLSTGAESNEAAIRMAKLVTG------KYEIVGFA 135
Query: 135 KSYHGSTLIAASLS------GL-PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187
+S+HG T AAS + G+ PA F +PAPF Y + E + +
Sbjct: 136 QSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAF-- 193
Query: 188 RLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVI 247
DLI ++ +AAFIAE Y ++ + +L I DE
Sbjct: 194 -------DLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQ 246
Query: 248 CAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSH 307
GR GTMF C + + PD+++ +K L A +P+ AI+ S + E H LG +
Sbjct: 247 TGVGRTGTMFACQRDGVTPDILTLSKTL-GAGLPLAAIVTSAAIEERAHE----LGYLFY 301
Query: 308 GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLI 366
T+ P+ AV + L + + +V + N + + + G+ + IG++RG GL+
Sbjct: 302 -TTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLL 360
Query: 367 LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV-----SGDNIMMSPPFIMSPEE 421
LG E ++ EP G+GA +C G+ + + G ++PP +S +E
Sbjct: 361 LGVEIVKDRRTKEPAD---GLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDE 417
Query: 422 VDELISKYGKALK 434
+D +S G+A++
Sbjct: 418 IDLGLSLLGQAIE 430
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/432 (26%), Positives = 197/432 (45%), Gaps = 40/432 (9%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
P++IE+++GS+VYD +G+ LD +G LG P +V+ L H F
Sbjct: 25 PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLD--HLFSGML 82
Query: 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 135
++P +DLA L + T + + ++G+E+N+ +++ K + + +
Sbjct: 83 SRPVVDLATRLANI-TPPGLDRALLLSTGAESNEAAIRMAKLVTG------KYEIVGFAQ 135
Query: 136 SYHGSTLIAASLS------GL-PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188
S+HG T AAS + G+ PA F +PAPF Y + E + +
Sbjct: 136 SWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAF--- 192
Query: 189 LANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVIC 248
DLI ++ +AAFIAE Y ++ + +L I DE
Sbjct: 193 ------DLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT 246
Query: 249 AFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHG 308
GR GTMF C + + PD+++ +K L A +P+ AI+ S + E H LG +
Sbjct: 247 GVGRTGTMFACQRDGVTPDILTLSKTL-GAGLPLAAIVTSAAIEERAHE----LGYLFY- 300
Query: 309 FTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLIL 367
T+ P+ AV + L + + +V + N + + + G+ + IG++RG GL+L
Sbjct: 301 TTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLL 360
Query: 368 GTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV-----SGDNIMMSPPFIMSPEEV 422
G E ++ EP G+GA +C G+ + + G ++PP +S +E+
Sbjct: 361 GVEIVKDRRTKEPAD---GLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEI 417
Query: 423 DELISKYGKALK 434
D +S G+A++
Sbjct: 418 DLGLSLLGQAIE 429
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 113/433 (26%), Positives = 197/433 (45%), Gaps = 40/433 (9%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 74
P++IE+++GS+VYD +G+ LD +G LG P +V+ L H F
Sbjct: 23 EPMIIERAKGSFVYDADGRAILDFTSGAMSAVLGHCHPEIVSVIGEYAGKLD--HLFSEM 80
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
++P +DLA L + T + + ++G+E+N+ +++ K + +
Sbjct: 81 LSRPVVDLATRLANI-TPPGLDRALLLSTGAESNEAAIRMAKLVTG------KYEIVGFA 133
Query: 135 KSYHGSTLIAASLS------GL-PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187
+S+HG T AAS + G+ PA F +PAPF Y + E + +
Sbjct: 134 QSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAF-- 191
Query: 188 RLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVI 247
DLI ++ +AAFIAE Y ++ + +L I DE
Sbjct: 192 -------DLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQ 244
Query: 248 CAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSH 307
GR GTMF C + + PD+++ +K L A +P+ AI+ S + E H LG +
Sbjct: 245 TGVGRTGTMFACQRDGVTPDILTLSKTL-GAGLPLAAIVTSAAIEERAHE----LGYLFY 299
Query: 308 GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLI 366
T+ P+ AV + L + + +V + N + + + G+ + IG++RG GL+
Sbjct: 300 -TTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLL 358
Query: 367 LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV-----SGDNIMMSPPFIMSPEE 421
LG E ++ EP G+GA +C G+ + + G ++PP +S +E
Sbjct: 359 LGVEIVKDRRTKEPAD---GLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDE 415
Query: 422 VDELISKYGKALK 434
+D +S G+A++
Sbjct: 416 IDLGLSLLGQAIE 428
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 195/426 (45%), Gaps = 58/426 (13%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS-FWNR 74
P +GS++YD G YLD +G+ LG S PRLV A Q L + FWNR
Sbjct: 23 PATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNR 82
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
P +LA ELL T KVFF N+G+EAN+ +K+ Y K + ++
Sbjct: 83 ---PQXELA-ELLSKNTFG--GKVFFANTGTEANEAAIKIARKYGKKK-SEKKYRILSAH 135
Query: 135 KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLE 194
S+HG TL + + +G P + F+ P V PG E+ NN+E
Sbjct: 136 NSFHGRTLGSLTATGQPKYQKPFE---PLV-------------PGFEYFEF-----NNVE 174
Query: 195 DLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLG 254
DL K + A F+ E + E+ + + +YD L + DEV C GR G
Sbjct: 175 DLRRKXSEDVCAVFL-EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGXGRTG 233
Query: 255 TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGH 314
+F KY + PD+++ AK L +PIGA++V + ++N L HG T+ G+
Sbjct: 234 KLFAYQKYGVVPDVLTTAKGLGGG-VPIGAVIV--------NERANVLEPGDHGTTFGGN 284
Query: 315 PVSCAVAIEALKIYKERNIVEQV----NKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTE 370
P++C + +K + +E+V N + K Q+ + + ++ ++RG GL +G +
Sbjct: 285 PLACRAGVTVIKELTKEGFLEEVEEKGNYLXKKLQEXKEEYD---VVADVRGXGLXIGIQ 341
Query: 371 FADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPEEVDELISKY 429
F + S E +C ++ +LV +G+N I PP + E+D +
Sbjct: 342 FREEVSNRE-----------VATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETL 390
Query: 430 GKALKA 435
K L+
Sbjct: 391 KKVLQG 396
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 113/433 (26%), Positives = 197/433 (45%), Gaps = 40/433 (9%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 74
P++IE+++GS+VYD +G+ LD +G LG P +V+ L H F
Sbjct: 25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLD--HLFSEM 82
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
++P +DLA L + T + + ++G+E+N+ +++ K + +
Sbjct: 83 LSRPVVDLATRLANI-TPPGLDRALLLSTGAESNEAAIRMAKLVTG------KYEIVGFA 135
Query: 135 KSYHGSTLIAASLS------GL-PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187
+S+HG T AAS + G+ PA F +PAPF Y + E + +
Sbjct: 136 QSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAF-- 193
Query: 188 RLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVI 247
DLI ++ +AAFIAE Y ++ + +L I DE
Sbjct: 194 -------DLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQ 246
Query: 248 CAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSH 307
GR GTMF C + + PD+++ +K L A +P+ AI+ S + E H LG +
Sbjct: 247 TGVGRTGTMFACQRDGVTPDILTLSKTL-GAGLPLAAIVTSAAIEERAHE----LGYLFY 301
Query: 308 GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLI 366
T+ P+ AV + L + + +V + N + + + G+ + IG++RG GL+
Sbjct: 302 -TTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLL 360
Query: 367 LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV-----SGDNIMMSPPFIMSPEE 421
LG E ++ EP G+GA +C G+ + + G ++PP +S +E
Sbjct: 361 LGVEIVKDRRTKEPAD---GLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDE 417
Query: 422 VDELISKYGKALK 434
+D +S G+A++
Sbjct: 418 IDLGLSLLGQAIE 430
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/416 (27%), Positives = 192/416 (46%), Gaps = 48/416 (11%)
Query: 21 KSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80
K +GS V+D GK+Y+D G+ TALG P LV A +Q TL +H+ T +P+L
Sbjct: 45 KGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETL--WHTSNVFTNEPAL 102
Query: 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGS 140
L ++L++ A+ +V F NSG+EAN+T KL +Y P K K IA ++HG
Sbjct: 103 RLGRKLID---ATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGR 159
Query: 141 TLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 200
+L S+ G P F ++H N+L +
Sbjct: 160 SLFTVSVGGQPKYSDGFGPKPADIIHVPF---------------------NDLHAVKAVM 198
Query: 201 GPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD 260
T A + E + + ++ + ++ L + DEV C GR G +F
Sbjct: 199 DDHTCAV-VVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYM 257
Query: 261 KYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320
Y + PD+++ AKAL + P+ A+L + E++ H SHG TY G+P++CAV
Sbjct: 258 HYGVTPDILTSAKALGGGF-PVSAMLTTQEIASAFHVG-------SHGSTYGGNPLACAV 309
Query: 321 AIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFADN-KSPN 378
A A I +++ ++ +F ++A + I +IRG GL++G E K
Sbjct: 310 AGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRA 369
Query: 379 EPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYGKAL 433
F Y GA+ G++V +G ++M +P ++ ++ E + ++ +A+
Sbjct: 370 RDF-------LYAGAEA---GVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAV 415
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/438 (26%), Positives = 192/438 (43%), Gaps = 51/438 (11%)
Query: 8 GWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF 67
G + D P+V+++++G +VYDVN K+Y D L+ G P ++ A Q L
Sbjct: 40 GAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTI 99
Query: 68 YHSFWNRTTKPSLDLAKELLEMFTASKMA--KVFFTNSGSEANDTQVKLV--WYYNNALG 123
++ + + E + + + KV N+G+EAN+T KL W Y
Sbjct: 100 -------CSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKI 152
Query: 124 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 183
N K + + ++ G TL S S F PF P + + +
Sbjct: 153 PENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF---GPFA-----PQFSKVPY------ 198
Query: 184 EYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIA 243
++LE L + + AFI E Y + V + KKY++LF+A
Sbjct: 199 -------DDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVA 251
Query: 244 DEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLG 303
DEV GR G + Y++KPD++ KALS + PI A+L + ++ VI
Sbjct: 252 DEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPG----- 306
Query: 304 SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRG 362
HG TY G+P++ ++ +EAL + + E K+ F + +K DS I+ ++RG
Sbjct: 307 --EHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRG 364
Query: 363 TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VSGDNIMMSPPFIMSPEE 421
GL+ EF + E + +++G++ R V I ++PP ++ E+
Sbjct: 365 KGLLCAIEFKN----------ELVNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQ 414
Query: 422 VDELISKYGKALKATEER 439
+DE K +K +ER
Sbjct: 415 LDECTEIIVKTVKFFDER 432
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 151 bits (381), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 121/416 (29%), Positives = 192/416 (46%), Gaps = 61/416 (14%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTL----PFYHSF 71
P+ + +G Y+YD GK+YLD ++G+ +LG + P+L A Q+ L Y +
Sbjct: 11 PVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENP 70
Query: 72 WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 131
W +LA +L++ F KVFF NSG+E+ + +KL Y G+ NK KFI
Sbjct: 71 WQE------ELAHKLVKHFWTE--GKVFFANSGTESVEAAIKLARKYWRDKGK-NKWKFI 121
Query: 132 ARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191
+ + S+HG T + S +G P H+ F+ P V PG +S N
Sbjct: 122 SFENSFHGRTYGSLSATGQPKFHKGFE---PLV-------------PG-----FSYAKLN 160
Query: 192 NLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFG 251
++ D + K E A I E + K+Q + K+ D+L I DEV G
Sbjct: 161 DI-DSVYKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIG 219
Query: 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 311
R G + +++KPD+++ AK L +PIGAIL EV +QS T G SHG T+
Sbjct: 220 RTGEFYAYQHFNLKPDVIALAKGLGGG-VPIGAILAREEV-----AQSFTPG--SHGSTF 271
Query: 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEF 371
G+P++C + + + ++ V ++ F++ +K G+++G GL+LG E
Sbjct: 272 GGNPLACRAG--TVVVDEVEKLLPHVREVGNYFKEKLKELGK----GKVKGRGLMLGLEL 325
Query: 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELIS 427
E Y EK ++ +G + PP I+ E +D IS
Sbjct: 326 ------------ERECKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAIS 369
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 181/372 (48%), Gaps = 30/372 (8%)
Query: 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWN 73
+HP+ +++E V+DV G++YLD G+ G P++VAA AQL L + F
Sbjct: 22 IHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS-HTCFQV 80
Query: 74 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAR 133
+P L+L + + + K +GSEA + VK+ A + IA
Sbjct: 81 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKI------ARAATKRSGTIAF 134
Query: 134 QKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHP----GETEEEYSTRL 189
+YHG T +L+G K + P + H +R +P G +E++ +
Sbjct: 135 SGAYHGRTHYTLALTG------KVN-PYSAGMGLMPGHVYRALYPCPLHGISEDDAIASI 187
Query: 190 ANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICA 249
++ PE IAA + E + ++++A+ ++ I+ IADEV
Sbjct: 188 HRIFKN---DAAPEDIAAIVIEPVQGSGGFYASSPAFMQRLRALCDEHGIMLIADEVQSG 244
Query: 250 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF 309
GR GT+F ++ + PDL +FAK+++ + P+ + EV + + G
Sbjct: 245 AGRTGTLFAMEQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAV-------APGGLGG 296
Query: 310 TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILG 368
TY+G+P++C A+E LK++++ N++++ N + K +DG+ A ++ P IG++RG G ++
Sbjct: 297 TYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIA 356
Query: 369 TEFADNKSPNEP 380
E ++ N+P
Sbjct: 357 IELFEDGDHNKP 368
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 181/372 (48%), Gaps = 30/372 (8%)
Query: 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWN 73
+HP+ +++E V+DV G++YLD G+ G P++VAA AQL L + F
Sbjct: 22 IHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS-HTCFQV 80
Query: 74 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAR 133
+P L+L + + + K +GSEA + VK+ A + IA
Sbjct: 81 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKI------ARAATKRSGTIAF 134
Query: 134 QKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHP----GETEEEYSTRL 189
+YHG T +L+G K + P + H +R +P G +E++ +
Sbjct: 135 SGAYHGRTHYTLALTG------KVN-PYSAGMGLMPGHVYRALYPCPLHGISEDDAIASI 187
Query: 190 ANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICA 249
++ PE IAA + E + ++++A+ ++ I+ IADEV
Sbjct: 188 HRIFKN---DAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSG 244
Query: 250 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF 309
GR GT+F ++ + PDL +FAK+++ + P+ + EV + + G
Sbjct: 245 AGRTGTLFAMEQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAV-------APGGLGG 296
Query: 310 TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILG 368
TY+G+P++C A+E LK++++ N++++ N + K +DG+ A ++ P IG++RG G ++
Sbjct: 297 TYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIA 356
Query: 369 TEFADNKSPNEP 380
E ++ N+P
Sbjct: 357 IELFEDGDHNKP 368
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 180/372 (48%), Gaps = 30/372 (8%)
Query: 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWN 73
+HP+ +++E V+DV G++YLD G G P++VAA AQL L + F
Sbjct: 22 IHPIFADRAENCRVWDVEGREYLDFAGGQAVLNTGHLHPKVVAAVEAQLKKLS-HTCFQV 80
Query: 74 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAR 133
+P L+L + + + K +GSEA + VK+ A + IA
Sbjct: 81 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKI------ARAATKRSGTIAF 134
Query: 134 QKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHP----GETEEEYSTRL 189
+YHG T +L+G K + P + H +R +P G +E++ +
Sbjct: 135 SGAYHGRTHYTLALTG------KVN-PYSAGMGLMPGHVYRALYPCPLHGISEDDAIASI 187
Query: 190 ANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICA 249
++ PE IAA + E + ++++A+ ++ I+ IADEV
Sbjct: 188 HRIFKN---DAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSG 244
Query: 250 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF 309
GR GT+F ++ + PDL +FAK+++ + P+ + EV + + G
Sbjct: 245 AGRTGTLFAMEQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAV-------APGGLGG 296
Query: 310 TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILG 368
TY+G+P++C A+E LK++++ N++++ N + K +DG+ A ++ P IG++RG G ++
Sbjct: 297 TYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIA 356
Query: 369 TEFADNKSPNEP 380
E ++ N+P
Sbjct: 357 IELFEDGDHNKP 368
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 148 bits (373), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 98/372 (26%), Positives = 180/372 (48%), Gaps = 30/372 (8%)
Query: 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWN 73
+HP+ +++E V+DV G++YLD G+ G P++VAA AQL L + F
Sbjct: 22 IHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS-HTCFQV 80
Query: 74 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAR 133
+P L+L + + + K +GSEA + VK+ A + IA
Sbjct: 81 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKI------ARAATKRSGTIAF 134
Query: 134 QKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHP----GETEEEYSTRL 189
+YHG T +L+G K + P + H +R +P G +E++ +
Sbjct: 135 SGAYHGRTHYTLALTG------KVN-PYSAGMGLMPGHVYRALYPCPLHGISEDDAIASI 187
Query: 190 ANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICA 249
++ PE IAA + E + ++++A+ ++ I+ IADE
Sbjct: 188 HRIFKN---DAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEAQSG 244
Query: 250 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF 309
GR GT+F ++ + PDL +FAK+++ + P+ + EV + + G
Sbjct: 245 AGRTGTLFAMEQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAV-------APGGLGG 296
Query: 310 TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILG 368
TY+G+P++C A+E LK++++ N++++ N + K +DG+ A ++ P IG++RG G ++
Sbjct: 297 TYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIA 356
Query: 369 TEFADNKSPNEP 380
E ++ N+P
Sbjct: 357 IELFEDGDHNKP 368
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 115/421 (27%), Positives = 199/421 (47%), Gaps = 46/421 (10%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
P + + EGS ++D GK+Y+D G+ ALG + P L A Q + F+H+ T
Sbjct: 22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYT 79
Query: 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 135
+P L LAK+L++ A+ +VFF NSG+EAN+ +KL + + +K +A +
Sbjct: 80 NEPVLRLAKKLID---ATFADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKN 136
Query: 136 SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLED 195
++HG TL S G PA Q F AP P R+A + N+
Sbjct: 137 AFHGRTLFTVSAGGQPAYSQDF---APL------PADIRHAAYNDI---------NSASA 178
Query: 196 LILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGT 255
LI ++ A I E + + ++ + +++ L I DEV GR G
Sbjct: 179 LI----DDSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE 234
Query: 256 MFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHP 315
++ Y + PDL++ AKAL + P+GA+L + E + V+ T+G +HG TY G+P
Sbjct: 235 LYAYMHYGVTPDLLTTAKALGGGF-PVGALLATEECARVM-----TVG--THGTTYGGNP 286
Query: 316 VSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFADN 374
++ AVA + L++ ++ V + F + + + + E+RG GL++G +
Sbjct: 287 LASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNAD 346
Query: 375 KSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYGKAL 433
+ G + K G++V ++G N++ +P +S EEV + ++ A
Sbjct: 347 YA---------GQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAAAC 397
Query: 434 K 434
+
Sbjct: 398 E 398
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 118/430 (27%), Positives = 197/430 (45%), Gaps = 65/430 (15%)
Query: 5 FTAGWQSTDVHPL--VIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQL 62
T + + + HPL VI K+EG +V D G +Y+D L+ G P+++ A Q
Sbjct: 6 LTDTYGANNYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQA 65
Query: 63 NTLPFY-HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYN 119
N + +F + P + +L T +M V N+G+EA +T +K W Y+
Sbjct: 66 NRVTLTSRAFHSDQLGPWYEKVAKL----TNKEM--VLPMNTGAEAVETAIKTARRWAYD 119
Query: 120 NALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFD--LPAPFVLHTDCPHYWRYAH 177
N+ + I + ++HG T+ A S+S + F LP V+ P+
Sbjct: 120 VKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVI----PY------ 169
Query: 178 PGETEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKY 237
+LE L P T AAFI E + ++ V KK
Sbjct: 170 -------------GDLEALKAAITPNT-AAFILEPIQGEAGINIPPAGFLKEALEVCKKE 215
Query: 238 DILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHS 297
++LF+ADE+ GR G +F CD ++ PD+ AL PI + ++
Sbjct: 216 NVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILGXALGGGVFPISCAAANRDI------ 269
Query: 298 QSNTLGSF---SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS 354
LG F SHG T+ G+P++CAV+I AL++ +E + E+ ++ K +K D+
Sbjct: 270 ----LGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEI-DN 324
Query: 355 PIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSP 413
P+I E+RG GL +G E NEP P + Q + G+L + + +N++ ++P
Sbjct: 325 PMITEVRGKGLFIGIEL------NEPARP-------YCEQLKAAGLLCKETHENVIRIAP 371
Query: 414 PFIMSPEEVD 423
P ++S E+++
Sbjct: 372 PLVISEEDLE 381
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 119/421 (28%), Positives = 193/421 (45%), Gaps = 48/421 (11%)
Query: 17 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTT 76
+V+EK +G Y++D KKYLD +G+ ALG + + A AQ++ L + +
Sbjct: 20 IVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNE- 78
Query: 77 KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK-KFIARQK 135
++A + AS + +VFFTNSG+E+ + K Y A + K +FIA +
Sbjct: 79 ----NIAAAAKNLAKASALERVFFTNSGTESIEGAXKTARKY--AFNKGVKGGQFIAFKH 132
Query: 136 SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLED 195
S+HG TL A SL+ ++K+ PF + +Y E +L N
Sbjct: 133 SFHGRTLGALSLTA----NEKYQ--KPFKPLISGVKFAKYNDISSVE-----KLVN---- 177
Query: 196 LILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGT 255
E A I E +++ ++ + + DIL IADE+ C GR G
Sbjct: 178 -------EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSGK 230
Query: 256 MFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHP 315
F + I PD+ + AKAL + +GA +++ +V+ SN+L + HG TY G+P
Sbjct: 231 FFAYEHAQILPDIXTSAKALGCG-LSVGAFVINQKVA------SNSLEAGDHGSTYGGNP 283
Query: 316 VSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNK 375
+ CA +I+KE I+E VNK+ P + + +I E G F
Sbjct: 284 LVCAGVNAVFEIFKEEKILENVNKLTPYLEQSL-----DELINEFDFCKKRKGLGFXQGL 338
Query: 376 SPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPEEVDELISKYGKALK 434
S ++ I +C+++ +L+ G+N + PP I+ E +DE K KALK
Sbjct: 339 SLDKSVKVAKVI-----QKCQENALLLISCGENDLRFLPPLILQKEHIDEXSEKLRKALK 393
Query: 435 A 435
+
Sbjct: 394 S 394
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/437 (24%), Positives = 201/437 (45%), Gaps = 30/437 (6%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
+L P+T+ V+P+V +EG + +G++ +D ++ W G + P+L AA +
Sbjct: 13 ILHPYTSMTSPLPVYPVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKS 70
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
Q++ + + F T P+++L ++L+ M T + VF +SGS A + +K+ Y
Sbjct: 71 QIDAMS-HVMFGGITHAPAIELCRKLVAM-TPQPLECVFLADSGSVAVEVAMKMALQYWQ 128
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHYWRYAHPG 179
A G +++F+ + YHG T A S+ ++H + P L P
Sbjct: 129 AKGEA-RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQ-------S 180
Query: 180 ETEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDI 239
+ E+ R L+ E A I + ++++ + + I
Sbjct: 181 RMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI 240
Query: 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQS 299
L IADE+ FGR G +F C+ I PD++ KAL+ M + A L + EV+E I +
Sbjct: 241 LLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETI--SN 298
Query: 300 NTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGE 359
G F HG T+ G+P++CA A +L I + + +QV I + ++ + D+ ++ +
Sbjct: 299 GEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVAD 358
Query: 360 IRGTGLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIM 417
+R G I + T N + + F E G+ +R G I + PP+I+
Sbjct: 359 VRVLGAIGVVETTHPVNMAALQKFFVE-------------QGVWIRPFGKLIYLMPPYII 405
Query: 418 SPEEVDELISKYGKALK 434
P+++ L + +A++
Sbjct: 406 LPQQLQRLTAAVNRAVQ 422
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/437 (24%), Positives = 200/437 (45%), Gaps = 30/437 (6%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
+L PFT+ V+P+V +EG + +G++ +D ++ W G + P+L AA +
Sbjct: 13 ILHPFTSMTSPLPVYPVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKS 70
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
Q++ + + F T P+++L ++L+ M T + VF +SGS A + +K+ Y
Sbjct: 71 QIDAMS-HVMFGGITHAPAIELCRKLVAM-TPQPLECVFLADSGSVAVEVAMKMALQYWQ 128
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHYWRYAHPG 179
A G +++F+ + YHG T A S+ ++H + P L P
Sbjct: 129 AKGEA-RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQ-------S 180
Query: 180 ETEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDI 239
+ E+ R L+ E A I + ++++ + + I
Sbjct: 181 RMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI 240
Query: 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQS 299
L IADE+ FGR G +F C+ I PD++ AL+ M + A L + EV+E I +
Sbjct: 241 LLIADEIATGFGRTGKLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETI--SN 298
Query: 300 NTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGE 359
G F HG T+ G+P++CA A +L I + + +QV I + ++ + D+ ++ +
Sbjct: 299 GEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVAD 358
Query: 360 IRGTGLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIM 417
+R G I + T N + + F E G+ +R G I + PP+I+
Sbjct: 359 VRVLGAIGVVETTHPVNMAALQKFFVE-------------QGVWIRPFGKLIYLMPPYII 405
Query: 418 SPEEVDELISKYGKALK 434
P+++ L + +A++
Sbjct: 406 LPQQLQRLTAAVNRAVQ 422
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 108/434 (24%), Positives = 198/434 (45%), Gaps = 30/434 (6%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 63
P+T+ V+P+V +EG + +G++ +D ++ W G + P+L AA +Q++
Sbjct: 16 PYTSMTSPLPVYPVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQID 73
Query: 64 TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 123
+ + F T P+++L ++L+ M T + VF +SGS A + +K+ Y +A G
Sbjct: 74 AMS-HVMFGEITHAPAIELCRKLVAM-TPQPLECVFLADSGSVAVEVAMKMALQYWDAKG 131
Query: 124 RPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHYWRYAHPGETE 182
+ +F+ + YHG T A S+ ++H + P L P +
Sbjct: 132 EA-RDRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQ-------SRMD 183
Query: 183 EEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFI 242
E+ R L+ E A I + ++++ + + IL I
Sbjct: 184 GEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLI 243
Query: 243 ADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTL 302
ADE+ FGR G +F C+ I PD++ KAL+ M + A L + EV+E I
Sbjct: 244 ADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETI--SDGEA 301
Query: 303 GSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG 362
G F HG T+ G+P++CA A +L I + + +QV I + ++ + D+ ++ ++R
Sbjct: 302 GCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRV 361
Query: 363 TGLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
G I + T N + + F E G+ +R G I + PP+I+ P+
Sbjct: 362 LGAIGVVETTHPVNMAALQKFFVE-------------QGVWIRPFGKLIYLMPPYIILPQ 408
Query: 421 EVDELISKYGKALK 434
++ L + +A++
Sbjct: 409 QLQRLTAAVNRAVQ 422
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 108/437 (24%), Positives = 201/437 (45%), Gaps = 30/437 (6%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
+L P+T+ V+P+V +EG + +G++ +D ++ W G + P+L AA +
Sbjct: 13 ILHPYTSMTSPLPVYPVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKS 70
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
Q++ + + F T P+++L ++L+ M T + VF +SGS A + +K+ Y
Sbjct: 71 QIDAMS-HVMFGGITHAPAIELCRKLVAM-TPQPLECVFLADSGSVAVEVAMKMALQYWQ 128
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHYWRYAHPG 179
A G +++F+ + YHG+T A S+ ++H + P L P
Sbjct: 129 AKGEA-RQRFLTFRNGYHGNTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQ-------S 180
Query: 180 ETEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDI 239
+ E+ R L+ E A I + ++++ + + I
Sbjct: 181 RMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI 240
Query: 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQS 299
L IADE+ FGR G +F C+ I PD++ AL+ M + A L + EV+E I +
Sbjct: 241 LLIADEIATGFGRTGKLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETI--SN 298
Query: 300 NTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGE 359
G F HG T+ G+P++CA A +L I + + +QV I + ++ + D+ ++ +
Sbjct: 299 GEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVAD 358
Query: 360 IRGTGLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIM 417
+R G I + T N + + F E G+ +R G I + PP+I+
Sbjct: 359 VRVLGAIGVVETTHPVNMAALQKFFVE-------------QGVWIRPFGKLIYLMPPYII 405
Query: 418 SPEEVDELISKYGKALK 434
P+++ L + +A++
Sbjct: 406 LPQQLQRLTAAVNRAVQ 422
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 108/437 (24%), Positives = 200/437 (45%), Gaps = 30/437 (6%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
+L P+T+ V+P+V +EG + +G++ +D ++ W G + P+L AA +
Sbjct: 13 ILHPYTSMTSPLPVYPVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKS 70
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
Q++ + + F T P+++L ++L+ M T + VF +SGS A + +K+ Y
Sbjct: 71 QIDAMS-HVMFGGITHAPAIELCRKLVAM-TPQPLECVFLADSGSVAVEVAMKMALQYWQ 128
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHYWRYAHPG 179
A G +++F+ + YHG T A S+ ++H + P L P
Sbjct: 129 AKGEA-RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQ-------S 180
Query: 180 ETEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDI 239
+ E+ R L+ E A I + ++++ + + I
Sbjct: 181 RMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI 240
Query: 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQS 299
L IADE+ FG G +F C+ I PD++ KAL+ M + A L + EV+E I +
Sbjct: 241 LLIADEIATGFGATGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETI--SN 298
Query: 300 NTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGE 359
G F HG T+ G+P++CA A +L I + + +QV I + ++ + D+ ++ +
Sbjct: 299 GEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVAD 358
Query: 360 IRGTGLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIM 417
+R G I + T N + + F E G+ +R G I + PP+I+
Sbjct: 359 VRVLGAIGVVETTHPVNMAALQKFFVE-------------QGVWIRPFGKLIYLMPPYII 405
Query: 418 SPEEVDELISKYGKALK 434
P+++ L + +A++
Sbjct: 406 LPQQLQRLTAAVNRAVQ 422
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 108/437 (24%), Positives = 200/437 (45%), Gaps = 30/437 (6%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
+L P+T+ V+P+V +EG + +G++ +D ++ W G + P+L AA +
Sbjct: 13 ILHPYTSMTSPLPVYPVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKS 70
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
Q++ + + F T P+++L ++L+ M T + VF +SGS A + +K+ Y
Sbjct: 71 QIDAMS-HVMFGGITHAPAIELCRKLVAM-TPQPLECVFLADSGSVAVEVAMKMALQYWQ 128
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHYWRYAHPG 179
A G +++F+ + YHG T A S+ ++H + P L P
Sbjct: 129 AKGEA-RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQ-------S 180
Query: 180 ETEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDI 239
+ E+ R L+ E A I + ++++ + + I
Sbjct: 181 RMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI 240
Query: 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQS 299
L IADE+ FGR G +F C+ I PD++ KAL+ M + A L + EV+E I +
Sbjct: 241 LLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETI--SN 298
Query: 300 NTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGE 359
G F HG T+ G+P++CA A +L I + + +QV I + ++ + D+ ++ +
Sbjct: 299 GEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVAD 358
Query: 360 IRGTGLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIM 417
+R G I + T N + + F E G+ + G I + PP+I+
Sbjct: 359 VRVLGAIGVVETTHPVNMAALQKFFVE-------------QGVWIAPFGKLIYLMPPYII 405
Query: 418 SPEEVDELISKYGKALK 434
P+++ L + +A++
Sbjct: 406 LPQQLQRLTAAVNRAVQ 422
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 108/422 (25%), Positives = 179/422 (42%), Gaps = 48/422 (11%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HSFWNR 74
P+ +E+ +G Y++DV G+KY D L+ + G P++V A +Q++ L +F+N
Sbjct: 59 PVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNN 118
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRPNKKKFIA 132
+ +L KV N+G EA +T KL W Y + K K +
Sbjct: 119 VLGEYEEYITKLFNYH------KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVF 172
Query: 133 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192
++ G TL A S S P + F PF+ D Y N+
Sbjct: 173 AAGNFWGRTLSAISSSTDPTSYDGF---GPFMPGFDIIPY------------------ND 211
Query: 193 LEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGR 252
L L +AAF+ E Y V+ + ++ +LFIADE+ R
Sbjct: 212 LPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLAR 271
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
G D +++PD+V KALS P+ A+L ++ I HG TY
Sbjct: 272 TGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPG-------EHGSTYG 324
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFA 372
G+P+ C VAI AL++ +E N+ E +K+ ++ + S ++ +RG GL+
Sbjct: 325 GNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLP-SDVVTAVRGKGLLNAIVIK 383
Query: 373 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VSGDNIMMSPPFIMSPEEVDELISKYGK 431
+ K + W + + +G+L + GD I +PP ++ +E+ E I K
Sbjct: 384 ETKDWD-----AWKV----CLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINK 434
Query: 432 AL 433
+
Sbjct: 435 TI 436
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/437 (24%), Positives = 200/437 (45%), Gaps = 30/437 (6%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
+L P+T+ V+P+V +EG + +G++ +D ++ W G + P+L AA +
Sbjct: 13 ILHPYTSMTSPLPVYPVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKS 70
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
Q++ + + F T P+++L ++L+ M T + VF +SGS A + +K+ Y
Sbjct: 71 QIDAMS-HVMFGGITHAPAIELCRKLVAM-TPQPLECVFLADSGSVAVEVAMKMALQYWQ 128
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHYWRYAHPG 179
A G +++F+ + +HG T A S+ ++H + P L P
Sbjct: 129 AKGEA-RQRFLTFRNGFHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQ-------S 180
Query: 180 ETEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDI 239
+ E+ R L+ E A I + ++++ + + I
Sbjct: 181 RMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI 240
Query: 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQS 299
L IADE+ FGR G +F C+ I PD++ AL+ M + A L + EV+E I +
Sbjct: 241 LLIADEIATGFGRTGKLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETI--SN 298
Query: 300 NTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGE 359
G F HG T+ G+P++CA A +L I + + +QV I + ++ + D+ ++ +
Sbjct: 299 GEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVAD 358
Query: 360 IRGTGLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIM 417
+R G I + T N + + F E G+ +R G I + PP+I+
Sbjct: 359 VRVLGAIGVVETTHPVNMAALQKFFVE-------------QGVWIRPFGKLIYLMPPYII 405
Query: 418 SPEEVDELISKYGKALK 434
P+++ L + +A++
Sbjct: 406 LPQQLQRLTAAVNRAVQ 422
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/437 (24%), Positives = 200/437 (45%), Gaps = 30/437 (6%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
+L P+T+ V+P+V +EG + +G++ +D ++ W G + P+L AA +
Sbjct: 13 ILHPYTSMTSPLPVYPVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKS 70
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
Q++ + + F T P+++L ++L+ M T + VF +SGS A + +K+ Y
Sbjct: 71 QIDAMS-HVMFGGITHAPAIELCRKLVAM-TPQPLECVFLADSGSVAVEVAMKMALQYWQ 128
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHYWRYAHPG 179
A G +++F+ + YHG T A S+ ++H + P L P
Sbjct: 129 AKGEA-RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQ-------S 180
Query: 180 ETEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDI 239
+ E+ R L+ E A I + ++++ + + I
Sbjct: 181 RMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI 240
Query: 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQS 299
L IADE+ FG+ G +F C+ I PD++ AL+ M + A L + EV+E I +
Sbjct: 241 LLIADEIATGFGKTGKLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETI--SN 298
Query: 300 NTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGE 359
G F HG T+ G+P++CA A +L I + + +QV I + ++ + D+ ++ +
Sbjct: 299 GEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVAD 358
Query: 360 IRGTGLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIM 417
+R G I + T N + + F E G+ +R G I + PP+I+
Sbjct: 359 VRVLGAIGVVETTHPVNMAALQKFFVE-------------QGVWIRPFGKLIYLMPPYII 405
Query: 418 SPEEVDELISKYGKALK 434
P+++ L + +A++
Sbjct: 406 LPQQLQRLTAAVNRAVQ 422
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/422 (25%), Positives = 178/422 (42%), Gaps = 48/422 (11%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HSFWNR 74
P+ +E+ +G Y++DV G+KY D L+ G P++V A +Q++ L +F+N
Sbjct: 22 PVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNN 81
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRPNKKKFIA 132
+ +L KV N+G EA +T KL W Y + K K +
Sbjct: 82 VLGEYEEYITKLFNYH------KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVF 135
Query: 133 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192
++ G TL A S S P + F PF+ D Y N+
Sbjct: 136 AAGNFWGRTLSAISSSTDPTSYDGF---GPFMPGFDIIPY------------------ND 174
Query: 193 LEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGR 252
L L +AAF+ E Y V+ + ++ +LFIADE+ R
Sbjct: 175 LPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLAR 234
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
G D +++PD+V KALS P+ A+L ++ I HG TY
Sbjct: 235 TGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPG-------EHGSTYG 287
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFA 372
G+P+ C VAI AL++ +E N+ E +K+ ++ + S ++ +RG GL+
Sbjct: 288 GNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLP-SDVVTAVRGKGLLNAIVIK 346
Query: 373 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VSGDNIMMSPPFIMSPEEVDELISKYGK 431
+ K + W + + +G+L + GD I +PP ++ +E+ E I K
Sbjct: 347 ETKDWD-----AWKV----CLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINK 397
Query: 432 AL 433
+
Sbjct: 398 TI 399
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 108/422 (25%), Positives = 178/422 (42%), Gaps = 48/422 (11%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HSFWNR 74
P+ +E+ +G Y++DV G+KY D L+ G P++V A +Q++ L +F+N
Sbjct: 59 PVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNN 118
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRPNKKKFIA 132
+ +L KV N+G EA +T KL W Y + K K +
Sbjct: 119 VLGEYEEYITKLFNYH------KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVF 172
Query: 133 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192
++ G TL A S S P + F PF+ D Y N+
Sbjct: 173 AAGNFWGRTLSAISSSTDPTSYDGF---GPFMPGFDIIPY------------------ND 211
Query: 193 LEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGR 252
L L +AAF+ E Y V+ + ++ +LFIADE+ R
Sbjct: 212 LPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLAR 271
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
G D +++PD+V KALS P+ A+L ++ I HG TY
Sbjct: 272 TGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPG-------EHGSTYG 324
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFA 372
G+P+ C VAI AL++ +E N+ E +K+ ++ + S ++ +RG GL+
Sbjct: 325 GNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLP-SDVVTAVRGKGLLNAIVIK 383
Query: 373 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VSGDNIMMSPPFIMSPEEVDELISKYGK 431
+ K + W + + +G+L + GD I +PP ++ +E+ E I K
Sbjct: 384 ETKDWD-----AWKV----CLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINK 434
Query: 432 AL 433
+
Sbjct: 435 TI 436
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/422 (25%), Positives = 178/422 (42%), Gaps = 48/422 (11%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HSFWNR 74
P+ +E+ +G Y++DV G+KY D L+ + G P++V A +Q++ L +F+N
Sbjct: 59 PVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNN 118
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRPNKKKFIA 132
+ +L KV N+G EA +T KL W Y + K K +
Sbjct: 119 VLGEYEEYITKLFNYH------KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVF 172
Query: 133 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192
++ G TL A S S P + F PF+ D Y N+
Sbjct: 173 AAGNFWGRTLSAISSSTDPTSYDGF---GPFMPGFDIIPY------------------ND 211
Query: 193 LEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGR 252
L L +AAF+ E Y V+ + ++ +LFIADE+ R
Sbjct: 212 LPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLAR 271
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
G D +++PD+V KALS P+ A+L ++ I H TY
Sbjct: 272 TGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPG-------EHFSTYG 324
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFA 372
G+P+ C VAI AL++ +E N+ E +K+ ++ + S ++ +RG GL+
Sbjct: 325 GNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLP-SDVVTAVRGKGLLNAIVIK 383
Query: 373 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VSGDNIMMSPPFIMSPEEVDELISKYGK 431
+ K + W + + +G+L + GD I +PP ++ +E+ E I K
Sbjct: 384 ETKDWD-----AWKV----CLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINK 434
Query: 432 AL 433
+
Sbjct: 435 TI 436
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 101/416 (24%), Positives = 182/416 (43%), Gaps = 59/416 (14%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 74
H L+I + +G+ V+D G +Y+D + G LG P +V A Q TL
Sbjct: 27 HDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQ---- 82
Query: 75 TTKPSLDLAKELLEMFTA---SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 131
T P+ + E TA ++ +VF NSG+EAN+ +K + +KKF+
Sbjct: 83 -TLPT-PMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHT------GRKKFV 134
Query: 132 ARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191
A + + G T+ + S++ P + F P V + Y N
Sbjct: 135 AAMRGFSGRTMGSLSVTWEPKYREPF---LPLVEPVEFIPY------------------N 173
Query: 192 NLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFG 251
++E L ET AA I E + + + ++ L I DE+ G
Sbjct: 174 DVEALKRAVDEET-AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMG 232
Query: 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 311
R G F + + I PD+++ AKAL +P+G ++ EV + ++ HG T+
Sbjct: 233 RTGKRFAFEHFGIVPDILTLAKALGGG-VPLGVAVMREEV-------ARSMPKGGHGTTF 284
Query: 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEF 371
G+P++ A + A++ + + E+ ++ P F + ++A SP I E+RG GL++G E
Sbjct: 285 GGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIP-SPKIREVRGMGLMVGLEL 343
Query: 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELI 426
+ +P Y ++H +L +G ++ PP ++ E+++ ++
Sbjct: 344 KEKAAP------------YIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVV 387
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 93/407 (22%), Positives = 176/407 (43%), Gaps = 33/407 (8%)
Query: 25 SYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAK 84
+ + D + LD+++ W G P L A T QL + + F T +P+ LAK
Sbjct: 67 TLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN-HVMFGGLTHEPAARLAK 125
Query: 85 ELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA 144
L+++ T + + VFF++SGS + + K+ Y G P K++ + + YHG T +A
Sbjct: 126 LLVDI-TPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLA 184
Query: 145 ASL----SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 200
S+ G+ +L D+ A V P +Y + E + +
Sbjct: 185 MSICDPHGGMHSLWT--DVLAAQVFAPQVP------------RDYDPAYSAAFEAQLAQH 230
Query: 201 GPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD 260
E A + Y ++ + ++Y++L I DE+ FGR G +F D
Sbjct: 231 AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAAD 290
Query: 261 KYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320
+ PD++ KAL+ Y+ + A L + +V+ I + G+ HG T+ +P++CAV
Sbjct: 291 HAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTI--SAGAAGALMHGPTFMANPLACAV 348
Query: 321 AIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEP 380
++ ++++ ++ ++ ++A G+ P + ++R G I G D
Sbjct: 349 SVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAI-GVIECDRPVDLAV 407
Query: 381 FPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELIS 427
P G+ +R + + PP+I +P E+ ++ S
Sbjct: 408 ATPA----------ALDRGVWLRPFRNLVYAMPPYICTPAEITQITS 444
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 92/407 (22%), Positives = 175/407 (42%), Gaps = 33/407 (8%)
Query: 25 SYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAK 84
+ + D + LD+++ W G P L A T QL + + F T +P+ LAK
Sbjct: 72 TLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN-HVMFGGLTHEPAARLAK 130
Query: 85 ELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA 144
L+++ T + + VFF++SGS + + K+ Y G P K++ + + YHG T +A
Sbjct: 131 LLVDI-TPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLA 189
Query: 145 ASL----SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 200
S+ G+ +L D+ A V P +Y + E + +
Sbjct: 190 MSICDPHGGMHSLWT--DVLAAQVFAPQVP------------RDYDPAYSAAFEAQLAQH 235
Query: 201 GPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD 260
E A + Y ++ + ++Y++L I DE+ FGR G +F D
Sbjct: 236 AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAAD 295
Query: 261 KYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320
+ PD++ KAL+ Y+ + A L + +V+ I + G+ G T+ +P++CAV
Sbjct: 296 HAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTI--SAGAAGALMRGPTFMANPLACAV 353
Query: 321 AIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEP 380
++ ++++ ++ ++ ++A G+ P + ++R G I G D
Sbjct: 354 SVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAI-GVIECDRPVDLAV 412
Query: 381 FPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELIS 427
P G+ +R + + PP+I +P E+ ++ S
Sbjct: 413 ATPA----------ALDRGVWLRPFRNLVYAMPPYICTPAEITQITS 449
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 124 bits (312), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 92/407 (22%), Positives = 175/407 (42%), Gaps = 33/407 (8%)
Query: 25 SYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAK 84
+ + D + LD+++ W G P L A T QL + + F T +P+ LAK
Sbjct: 47 TLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN-HVMFGGLTHEPAARLAK 105
Query: 85 ELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA 144
L+++ T + + VFF++SGS + + K+ Y G P K++ + + YHG T +A
Sbjct: 106 LLVDI-TPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLA 164
Query: 145 ASL----SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 200
S+ G+ +L D+ A V P +Y + E + +
Sbjct: 165 MSICDPHGGMHSLWT--DVLAAQVFAPQVP------------RDYDPAYSAAFEAQLAQH 210
Query: 201 GPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD 260
E A + Y ++ + ++Y++L I DE+ FGR G +F D
Sbjct: 211 AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAAD 270
Query: 261 KYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320
+ PD++ KAL+ Y+ + A L + +V+ I + G+ G T+ +P++CAV
Sbjct: 271 HAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTI--SAGAAGALMRGPTFMANPLACAV 328
Query: 321 AIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEP 380
++ ++++ ++ ++ ++A G+ P + ++R G I G D
Sbjct: 329 SVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAI-GVIECDRPVDLAV 387
Query: 381 FPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELIS 427
P G+ +R + + PP+I +P E+ ++ S
Sbjct: 388 ATPA----------ALDRGVWLRPFRNLVYAMPPYICTPAEITQITS 424
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 104/424 (24%), Positives = 190/424 (44%), Gaps = 39/424 (9%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
P+ + ++ G V D +G + +D +G+ T +G S PR+V A Q+ F H+ + T
Sbjct: 61 PVFVVRAGGGIVEDADGNRLIDLGSGIAVTTIGNSAPRVVDAVRDQVEQ--FTHTCFMVT 118
Query: 76 T-KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
+ + +A++L + S + NSG+EA + +K+ + K+ +A
Sbjct: 119 PYEQYVAVAEQLNRITPGSGEKRTVLFNSGAEAVENSIKVARAHTR------KQAVVAFD 172
Query: 135 KSYHGSTLIAASLSGLPALHQK-FDLPAPFVLHTDCPHYWR---YAHPGETEEEYSTRLA 190
+YHG T + +L+ ++ F AP + + +R T+ E + A
Sbjct: 173 YAYHGRTNLTMALTAKSMPYKSGFGPFAPEIYRAPVSYPYRDNLLDKDIATDGELAAERA 232
Query: 191 NNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAF 250
NL D + G +AA I E + +Q + D++FIADEV F
Sbjct: 233 INLIDKQI--GAANLAAVIIEPIAGEGGFIVPADGFLPALQRWCRDNDVVFIADEVQTGF 290
Query: 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT 310
R G MF CD +++PDL+ A ++ + P+ A+ E+ + H+ G T
Sbjct: 291 ARTGAMFACDHENVEPDLIVTAXGIADGF-PLSAVTGRAEIMDAPHTS-------GLGGT 342
Query: 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQD---GVKAFSDSPIIGEIRGTGLIL 367
+ G+PV+CA A+ ++ + +VE+ +I D ++A D +G++RG G ++
Sbjct: 343 FGGNPVACAAALATIETIERDGMVERARQIERLVMDRLLRLQAADDR--LGDVRGRGAMI 400
Query: 368 GTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---GDNIMMSPPFIMSPEEVDE 424
E + + P+ + A G++V G+ I + PP +S DE
Sbjct: 401 AMELVKSGTAE----PDAALTQKLAAAAHAAGVIVLTCGMFGNVIRLLPPLTIS----DE 452
Query: 425 LISK 428
L+S+
Sbjct: 453 LLSE 456
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 116/440 (26%), Positives = 192/440 (43%), Gaps = 34/440 (7%)
Query: 3 APFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQL 62
A +AG ST P+ ++G + D +G ++D AG+ T +G S P + AA Q
Sbjct: 36 AAVSAGVGST--APVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQA 93
Query: 63 NTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAK-VFFTNSGSEANDTQVKLVWYYNNA 121
F H+ + T ELL T K NSG+EA + +K+ A
Sbjct: 94 TH--FTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARL---A 148
Query: 122 LGRPNKKKFIARQKSYHGSTLIAASLSG--LPALHQKFDLPAPFVLHTDCPHYWRYAHPG 179
GRP +A +YHG T + +L+ +P +F AP V + R PG
Sbjct: 149 TGRP---AVVAFDNAYHGRTNLTMALTAKSMP-YKSQFGPFAPEVYRMPASYPLRD-EPG 203
Query: 180 ETEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDI 239
T EE + R + +E I G +++AA I E + + A + +
Sbjct: 204 LTGEEAARRAISRIETQI---GAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGV 260
Query: 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQS 299
+FIADEV F R G F + I PD+V+ A ++ MP+ A+ E+ + +++
Sbjct: 261 VFIADEVQTGFARTGAWFASEHEGIVPDIVTMAXGIAGG-MPLSAVTGRAELMDAVYAGG 319
Query: 300 NTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIG 358
TY G+PV+CA A+ AL + +E ++ + I + A ++ IIG
Sbjct: 320 LG-------GTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIG 372
Query: 359 EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---GDNIMMSPPF 415
E+RG G +L E + P+ + A+ G+L+ G+ I + PP
Sbjct: 373 EVRGRGAMLAIEIVKPGT----LEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPL 428
Query: 416 IMSPEEVDELISKYGKALKA 435
++ + +DE I+ ++A
Sbjct: 429 VIGDDLLDEGITALSDIIRA 448
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/403 (25%), Positives = 176/403 (43%), Gaps = 36/403 (8%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
P+ ++ G V DV+G + +D +G+ T +G S P++V A +Q+ F H+ + T
Sbjct: 44 PVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGD--FTHTCFMVT 101
Query: 76 TKPSLDLAKELLEMFT---ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 132
E L T K + +F NSGSEA + VK+ + + K +A
Sbjct: 102 PYEGYVAVCEQLNRLTPVRGDKRSALF--NSGSEAVENAVKIARSHTH------KPAVVA 153
Query: 133 RQKSYHGSTLIAASLSG--LPALHQKFDLPAPFVLHTDCPHYWRYAHPGE---TEEEYST 187
+YHG T + +L+ +P F AP + + +R A G+ T+ E +
Sbjct: 154 FDHAYHGRTNLTMALTAKVMP-YKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAA 212
Query: 188 RLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVI 247
+ A + D + G + +AA + E + + +K D++FIADEV
Sbjct: 213 KRAITVIDKQI--GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQ 270
Query: 248 CAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSH 307
F R G MF C+ I PDL+ A ++ +P+ A+ E+ + H
Sbjct: 271 TGFARTGAMFACEHEGIDPDLIVTAXGIAGG-LPLSAVTGRAEIMDSPHVS-------GL 322
Query: 308 GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLI 366
G TY G+P++CA A+ ++ + +V + +I +D + ++ IG++RG G +
Sbjct: 323 GGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAM 382
Query: 367 LGTEF--ADNKSPNEPFPPEWGIGAYFGA----QCEKHGMLVR 403
+ E A P+ GA+ C +G +VR
Sbjct: 383 IAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVR 425
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 109/439 (24%), Positives = 182/439 (41%), Gaps = 50/439 (11%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
P+ +E ++G + DV+G ++D +G+ T++G S+P +VAA F H+ + T
Sbjct: 47 PVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAH--FTHTCFMVT 104
Query: 76 TKPSLDLAKELLEMFTASKMAK--VFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAR 133
E L T AK V F NSG+EA + VK+ A GR +A
Sbjct: 105 PYEGYVAVTEQLNRLTPGDHAKRTVLF-NSGAEAVENAVKVARL---ATGR---DAVVAF 157
Query: 134 QKSYHGSTLIAASLSGLPALHQ-KFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192
+YHG T + +L+ ++ F AP V + +R +P T E + R
Sbjct: 158 DHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITM 217
Query: 193 LEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGR 252
+E I G + +AA I E + + K+ I+FIADEV F R
Sbjct: 218 IEKQI---GGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCR 274
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF--- 309
G F D + PD+++ AK ++ +P+ AI ++ + +H +
Sbjct: 275 TGEWFAVDHEGVVPDIITMAKGIAGG-LPLSAITGRADLLDAVHPGGLGGTYGGNPVACA 333
Query: 310 -------TYSGHPVSC-AVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR 361
T H ++ A IE L + K R + +++ ++G+IR
Sbjct: 334 AALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSA------------GGGSVVGDIR 381
Query: 362 GTGLILGTEFAD--NKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---GDNIMMSPPFI 416
G G +L E +K PN A C K G+++ G+ I + PP +
Sbjct: 382 GRGAMLAIELVQPGSKEPNAELTKA------VAAACLKEGVIILTCGTYGNVIRLLPPLV 435
Query: 417 MSPEEVDELISKYGKALKA 435
+S E + + + A+KA
Sbjct: 436 ISDELLIDGLEVLAAAIKA 454
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/418 (23%), Positives = 176/418 (42%), Gaps = 37/418 (8%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
P+ + + G + D +G + +D +G+ T +G S P +V A T Q+ F H+ + T
Sbjct: 51 PVYVVAAGGGVLADADGNQLIDFGSGIAVTTVGNSAPAVVDAVTQQVAA--FTHTCFMVT 108
Query: 76 T-KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
+ + +A+ L + + NSG+EA + VK+ Y ++ +
Sbjct: 109 PYEGYVKVAEHLNRLTPGDHEKRTALFNSGAEAVENAVKIARAYTR------RQAVVVFD 162
Query: 135 KSYHGSTLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRY--AHPGETEEEYSTRLAN 191
+YHG T + +++ A +Q + PF +R ++P E A
Sbjct: 163 HAYHGRTNLTMAMT---AKNQPYKHGFGPF-----ANEVYRVPTSYPFRDGETDGAAAAA 214
Query: 192 NLEDLILKE-GPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAF 250
+ DLI K+ G + +AA + E + +Q +F+ADEV F
Sbjct: 215 HALDLINKQVGADNVAAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTGF 274
Query: 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT 310
R G +F C+ ++ PDL+ AK ++ +P+ A+ E+ + S T
Sbjct: 275 ARTGALFACEHENVVPDLIVTAKGIAGG-LPLSAVTGRAEIMDGPQSGGLGG-------T 326
Query: 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGT 369
Y G+P++CA A+ + + N+V + I + A + + P IGE+RG G ++
Sbjct: 327 YGGNPLACAAALAVIDTIERENLVARARAIGETMLSRLGALAAADPRIGEVRGRGAMIAV 386
Query: 370 EFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIM-MSPPFIMSPEEVDE 424
E + P+ + A G++V G N++ PP M +DE
Sbjct: 387 ELVKPGTTE----PDADLTKRVAAAAHAQGLVVLTCGTYGNVLRFLPPLSMPDHLLDE 440
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 139/337 (41%), Gaps = 38/337 (11%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
P+ E+ +G+Y +DV+G KY+D LA G + P + A T Y +
Sbjct: 38 PIAXERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGT----P 93
Query: 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 135
T + AK L E A + KV F NSG+EA T +++ Y GR KF
Sbjct: 94 TALEVKFAKXLKEAXPA--LDKVRFVNSGTEAVXTTIRVARAYT---GRTKIXKFAG--- 145
Query: 136 SYHGST--LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193
YHG + ++ A+ SG P L T P +E T NN+
Sbjct: 146 CYHGHSDLVLVAAGSG------------PSTLGTPD----SAGVPQSIAQEVITVPFNNV 189
Query: 194 EDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFG 251
E L L + +AA + E + EKV +V + L I DEVI AF
Sbjct: 190 ETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF- 248
Query: 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 311
R D + PDL + + +PIGA E+ E Q LG T
Sbjct: 249 RFXYGGAQDLLGVTPDLTALGXVIGGG-LPIGAYGGKKEIXE----QVAPLGPAYQAGTX 303
Query: 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV 348
+G+P S A I L++ ++ + E+++++ + G+
Sbjct: 304 AGNPASXASGIACLEVLQQEGLYEKLDELGATLEKGI 340
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 82/352 (23%), Positives = 149/352 (42%), Gaps = 46/352 (13%)
Query: 9 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPF 67
++S P+V ++ + +Y +DV+G +Y+D + G W A+ G + P ++ A +
Sbjct: 28 FKSVGGQPIVFDRVKDAYAWDVDGNRYIDYV-GTWGPAICGHAHPEVIEALKVAMEK--- 83
Query: 68 YHSFWNRTTKPSLDLAKELLEMFTAS--KMAKVFFTNSGSEANDTQVKLVWYYNNALGRP 125
+ L L EM + + V F NSG+EA ++L+ Y
Sbjct: 84 -----GTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYT------ 132
Query: 126 NKKKFIARQKSYHG--STLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRYAHPGETE 182
+ K I + YHG + + SG+ L LP +P V P +T
Sbjct: 133 GRDKIIKFEGCYHGHADMFLVKAGSGVATL----GLPSSPGV-------------PKKTT 175
Query: 183 EEYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDIL 240
T N+LE + + E P IA I E + E ++ + ++D L
Sbjct: 176 ANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDAL 235
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
+ DEVI F R+ +K+ + PDL + K + +P+GA E+ +++
Sbjct: 236 LVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPA-- 291
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS 352
G T SG+P++ I+ L++ ++ E +++I + DG+ A +
Sbjct: 292 --GPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIA 341
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 149/347 (42%), Gaps = 44/347 (12%)
Query: 9 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTAL-GGSEPRLVAAATAQLNTLPF 67
++S P+V + +G++++DV+G +Y+D + G W A+ G + P ++ A A L
Sbjct: 12 FKSVGGQPIVFDHVKGAHIWDVDGNQYIDYV-GSWGPAIVGHAHPEVIDALHAALEKGTS 70
Query: 68 YHSFWNRTTKPSLDLAKELLEMFTAS--KMAKVFFTNSGSEANDTQVKLVWYYNNALGRP 125
+ + P L L L EM A+ + V F NSG+EA ++L+ Y
Sbjct: 71 FGA-------PCL-LENILAEMVIAAVPSVEMVRFVNSGTEACMAVLRLMRAYT------ 116
Query: 126 NKKKFIARQKSYHG--STLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 183
++K I + YHG + + SG+ L LP D P +
Sbjct: 117 QREKVIKFEGCYHGHADMFLVKAGSGVATL----GLP-------DSPGVPKATTAATLTA 165
Query: 184 EYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILF 241
Y N+LE + + ++ P IA I E + E ++ + K+Y L
Sbjct: 166 PY-----NDLEAVSRLFEQYPNDIAGVILEPVVGNAGFIPPDAGFLEGLRELTKQYGALL 220
Query: 242 IADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNT 301
+ DEV+ F R+ +K+ + PDL + K + +P+GA E+ +++
Sbjct: 221 VFDEVMTGF-RIAYGGAQEKFGVTPDLTTLGKVIGGG-LPVGAYGGRAEIMKMVAPA--- 275
Query: 302 LGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV 348
G T SG+P++ I+ L+I E +++I K G+
Sbjct: 276 -GPVYQAGTLSGNPLAMTAGIKTLEILSRPGSYEHLDRITGKLVQGL 321
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 149/352 (42%), Gaps = 46/352 (13%)
Query: 9 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPF 67
++S P+V ++ + +Y +DV+G +Y+D + G W A+ G + P ++ A +
Sbjct: 28 FKSVGGQPIVFDRVKDAYAWDVDGNRYIDYV-GTWGPAICGHAHPEVIEALKVAMEK--- 83
Query: 68 YHSFWNRTTKPSLDLAKELLEMFTAS--KMAKVFFTNSGSEANDTQVKLVWYYNNALGRP 125
+ L L EM + + V F NSG+EA ++++ Y
Sbjct: 84 -----GTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYT------ 132
Query: 126 NKKKFIARQKSYHG--STLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRYAHPGETE 182
+ K I + YHG + + SG+ L LP +P V P +T
Sbjct: 133 GRDKIIKFEGCYHGHADMFLVKAGSGVATL----GLPSSPGV-------------PKKTT 175
Query: 183 EEYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDIL 240
T N+LE + + E P IA I E + E ++ + ++D L
Sbjct: 176 ANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDAL 235
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
+ DEVI F R+ +K+ + PDL + K + +P+GA E+ +++
Sbjct: 236 LVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPA-- 291
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS 352
G T SG+P++ I+ L++ ++ E +++I + DG+ A +
Sbjct: 292 --GPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIA 341
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 149/352 (42%), Gaps = 46/352 (13%)
Query: 9 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPF 67
++S P+V ++ + +Y +DV+G +Y+D + G W A+ G + P ++ A +
Sbjct: 33 FKSVGGQPIVFDRVKDAYAWDVDGNRYIDYV-GTWGPAICGHAHPEVIEALKVAMEK--- 88
Query: 68 YHSFWNRTTKPSLDLAKELLEMFTAS--KMAKVFFTNSGSEANDTQVKLVWYYNNALGRP 125
+ L L EM + + V F NSG+EA ++L+ Y
Sbjct: 89 -----GTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYT------ 137
Query: 126 NKKKFIARQKSYHG--STLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRYAHPGETE 182
+ K I + YHG + + SG+ L LP +P V P +T
Sbjct: 138 GRDKIIKFEGCYHGHADMFLVKAGSGVATL----GLPSSPGV-------------PKKTT 180
Query: 183 EEYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDIL 240
T N+LE + + E P IA I E + E ++ + ++D L
Sbjct: 181 ANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDAL 240
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
+ DEV+ F R+ +K+ + PDL + K + +P+GA E+ +++
Sbjct: 241 LVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPA-- 296
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS 352
G T SG+P++ I+ L++ ++ E +++I + DG+ A +
Sbjct: 297 --GPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIA 346
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 149/352 (42%), Gaps = 46/352 (13%)
Query: 9 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPF 67
++S P+V ++ + +Y +DV+G +Y+D + G W A+ G + P ++ A +
Sbjct: 28 FKSVGGQPIVFDRVKDAYAWDVDGNRYIDYV-GTWGPAICGHAHPEVIEALKVAMEK--- 83
Query: 68 YHSFWNRTTKPSLDLAKELLEMFTAS--KMAKVFFTNSGSEANDTQVKLVWYYNNALGRP 125
+ L L EM + + V F NSG+EA ++++ Y
Sbjct: 84 -----GTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYT------ 132
Query: 126 NKKKFIARQKSYHG--STLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRYAHPGETE 182
+ K I + YHG + + SG+ L LP +P V P +T
Sbjct: 133 GRDKIIKFEGCYHGHADMFLVKAGSGVATL----GLPSSPGV-------------PKKTT 175
Query: 183 EEYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDIL 240
T N+LE + + E P IA I E + E ++ + ++D L
Sbjct: 176 ANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDAL 235
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
+ DEV+ F R+ +K+ + PDL + K + +P+GA E+ +++
Sbjct: 236 LVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPA-- 291
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS 352
G T SG+P++ I+ L++ ++ E +++I + DG+ A +
Sbjct: 292 --GPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIA 341
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 149/352 (42%), Gaps = 46/352 (13%)
Query: 9 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPF 67
++S P+V ++ + +Y +DV+G +Y+D + G W A+ G + P ++ A +
Sbjct: 33 FKSVGGQPIVFDRVKDAYAWDVDGNRYIDYV-GTWGPAICGHAHPEVIEALKVAMEK--- 88
Query: 68 YHSFWNRTTKPSLDLAKELLEMFTAS--KMAKVFFTNSGSEANDTQVKLVWYYNNALGRP 125
+ L L EM + + V F NSG+EA ++++ Y
Sbjct: 89 -----GTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYT------ 137
Query: 126 NKKKFIARQKSYHG--STLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRYAHPGETE 182
+ K I + YHG + + SG+ L LP +P V P +T
Sbjct: 138 GRDKIIKFEGCYHGHADMFLVKAGSGVATL----GLPSSPGV-------------PKKTT 180
Query: 183 EEYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDIL 240
T N+LE + + E P IA I E + E ++ + ++D L
Sbjct: 181 ANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDAL 240
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
+ DEV+ F R+ +K+ + PDL + K + +P+GA E+ +++
Sbjct: 241 LVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPA-- 296
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS 352
G T SG+P++ I+ L++ ++ E +++I + DG+ A +
Sbjct: 297 --GPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIA 346
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 98/425 (23%), Positives = 172/425 (40%), Gaps = 23/425 (5%)
Query: 10 QSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYH 69
Q PL I G+ + + NG++ +D L+G W A G + AA + P
Sbjct: 20 QKLRFFPLAISGGRGARLIEENGRELID-LSGAWGAASLGYGHPAIVAAVSAAAANPAGA 78
Query: 70 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129
+ + + P++ LA+ LL F K++F +SGS+AN+ + + A GR
Sbjct: 79 TILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIV---KATGRSG--- 132
Query: 130 FIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189
IA +YHG T+ + + SG Q A ++ P +R T + T L
Sbjct: 133 VIAFAGAYHGCTVGSMAFSGHSV--QADAAKADGLILLPYPDPYRPYRNDPTGDAILTLL 190
Query: 190 ANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICA 249
E L AAFI E + K + + + IL + DEV
Sbjct: 191 T---EKLAAVPAGSIGAAFI-EPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVG 246
Query: 250 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF 309
R G + + PD++ K L + +++P +E++ S +F+
Sbjct: 247 LARSGRLHCFEHEGFVPDILVLGKGLGGGLPL--SAVIAP--AEILDCAS----AFAMQ- 297
Query: 310 TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILG 368
T G+P+S A + L+ ++ + +DG+ + P+IG+IRG GL G
Sbjct: 298 TLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACG 357
Query: 369 TEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISK 428
E ++ EP E Y Q V ++G+ + +PP ++ ++ + +
Sbjct: 358 MELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDL 417
Query: 429 YGKAL 433
+A
Sbjct: 418 LDRAF 422
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 98/425 (23%), Positives = 172/425 (40%), Gaps = 23/425 (5%)
Query: 10 QSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYH 69
Q PL I G+ + + NG++ +D L+G W A G + AA + P
Sbjct: 33 QKLRFFPLAISGGRGARLIEENGRELID-LSGAWGAASLGYGHPAIVAAVSAAAANPAGA 91
Query: 70 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129
+ + + P++ LA+ LL F K++F +SGS+AN+ + + A GR
Sbjct: 92 TILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIV---KATGRSG--- 145
Query: 130 FIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189
IA +YHG T+ + + SG Q A ++ P +R T + T L
Sbjct: 146 VIAFAGAYHGCTVGSMAFSGHSV--QADAAKADGLILLPYPDPYRPYRNDPTGDAILTLL 203
Query: 190 ANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICA 249
E L AAFI E + K + + + IL + DEV
Sbjct: 204 T---EKLAAVPAGSIGAAFI-EPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVG 259
Query: 250 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF 309
R G + + PD++ K L + +++P +E++ S +F+
Sbjct: 260 LARSGRLHCFEHEGFVPDILVLGKGLGGGLPL--SAVIAP--AEILDCAS----AFAMQ- 310
Query: 310 TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILG 368
T G+P+S A + L+ ++ + +DG+ + P+IG+IRG GL G
Sbjct: 311 TLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACG 370
Query: 369 TEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISK 428
E ++ EP E Y Q V ++G+ + +PP ++ ++ + +
Sbjct: 371 MELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDL 430
Query: 429 YGKAL 433
+A
Sbjct: 431 LDRAF 435
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 131/321 (40%), Gaps = 40/321 (12%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 74
+P +++ EG+Y+Y V+G + +D + LG PR++ A L Y +
Sbjct: 38 YPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGWLYGA---- 93
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
+ + LA+++L M + F NSG+EA T ++L Y GR KF
Sbjct: 94 PGEAEVLLAEKILGYVKRGGMIR--FVNSGTEATMTAIRLARGYT---GRDLILKFDGCY 148
Query: 135 KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA---N 191
H + L+AA + HY G E L N
Sbjct: 149 HGSHDAVLVAAG--------------------SAAAHYGVPTSAGVPEAVARLTLVTPYN 188
Query: 192 NLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICA 249
++E L + E + IA I E + +Q + ++ L I DEV+
Sbjct: 189 DVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTG 248
Query: 250 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF 309
F RLG ++I+ D++ K + + P+GA+ S EV ++ Q F+ G
Sbjct: 249 F-RLGLEGAQGYFNIEGDIIVLGKIIGGGF-PVGAVAGSREVMSLLTPQGKV---FNAG- 302
Query: 310 TYSGHPVSCAVAIEALKIYKE 330
T++ HP++ A + LK +E
Sbjct: 303 TFNAHPITMAAGLATLKALEE 323
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 133/329 (40%), Gaps = 59/329 (17%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNT-LPFYHSFWNR 74
P + + EG+YV+D +G +YLD + LG + P+++A L L F
Sbjct: 35 PPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGLTF-----GA 89
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
+ + LAK++ + + + F NSG+EA + ++L Y GRP KF +
Sbjct: 90 PSPLEVALAKKVKRAYPFVDLVR--FVNSGTEATMSALRLARGYT---GRPYIVKF---R 141
Query: 135 KSYHGS-------------TLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 181
+YHG TL S +G+P + K L VL + P R
Sbjct: 142 GNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTL----VLEYNDPEGLRE------ 191
Query: 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILF 241
+LK E IAA I E + + + K Y +L
Sbjct: 192 ---------------VLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLL 235
Query: 242 IADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNT 301
IADEV+ F RL + +KPDLV+ K L +P A E+ E +
Sbjct: 236 IADEVMTGF-RLAFGGATELLGLKPDLVTLGKILGGG-LPAAAYAGRREIMEKV----AP 289
Query: 302 LGSFSHGFTYSGHPVSCAVAIEALKIYKE 330
LG T SG+P++ A + L++ +E
Sbjct: 290 LGPVYQAGTLSGNPLAMAAGLATLELLEE 318
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 141/322 (43%), Gaps = 38/322 (11%)
Query: 9 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY 68
++S D+ P+ +E+ +GS ++D++G +Y+D + LG + R+V + L + Y
Sbjct: 37 FKSVDMDPIFMERGKGSKIFDIDGNEYIDYVLSWGPLILGHTNDRVVES----LKKVAEY 92
Query: 69 HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128
+ + T+ +LAK +++ + ++ ++ +SG+EA + ++L A G +
Sbjct: 93 GTSFGAPTEVENELAKLVIDRVPSVEIVRM--VSSGTEATMSALRL------ARGYTGRN 144
Query: 129 KFIARQKSY--HGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYS 186
K + + Y HG +L+ + SG+ L LP D P P +
Sbjct: 145 KILKFEGCYHGHGDSLLIKAGSGVATL----GLP-------DSP-----GVPEGIAKNTI 188
Query: 187 TRLANNLED--LILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIAD 244
T N+LE L ++ E IA I E + + ++ + ++Y L I D
Sbjct: 189 TVPYNDLESVKLAFQQFGEDIAGVIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFD 248
Query: 245 EVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGS 304
EV+ F R+ + + PDL K + +P+GA E+ E I G
Sbjct: 249 EVMTGF-RVDYNCAQGYFGVTPDLTCLGKVIGGG-LPVGAYGGKAEIMEQIAPS----GP 302
Query: 305 FSHGFTYSGHPVSCAVAIEALK 326
T SG+P++ +E LK
Sbjct: 303 IYQAGTLSGNPLAMTAGLETLK 324
>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Yersinia Pestis Co92
Length = 429
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 133/338 (39%), Gaps = 38/338 (11%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
PL IE+++G+Y++DV+GK Y+D + LG + P A A + + SF
Sbjct: 36 PLFIERADGAYLFDVDGKAYIDYVGSWGPXILGHNHP---AIRQAVIEAVERGLSF-GAP 91
Query: 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 135
T+ + A+ + ++ + NSG+EA + ++L A G + K I +
Sbjct: 92 TEXEVKXAQLVTDLVPTXDXVRX--VNSGTEATXSAIRL------ARGYTGRDKIIKFEG 143
Query: 136 SYHG--STLIAASLSGLPALHQKFD--LPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191
YHG L+ + SG L Q +P F HT Y A + E+Y
Sbjct: 144 CYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQY------ 197
Query: 192 NLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFG 251
P+ +A I E + ++A+ ++ L I DEV F
Sbjct: 198 ----------PQEVACIIVEPVAGNXNCIPPLPEFLPGLRALCDEFGALLIIDEVXTGF- 246
Query: 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 311
R+ D Y + PDL K + P+GA EV + G T
Sbjct: 247 RVALAGAQDYYHVIPDLTCLGKIIGGG-XPVGAFGGRREVXNALAPT----GPVYQAGTL 301
Query: 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK 349
SG+P++ A L + + E + ++ G++
Sbjct: 302 SGNPIAXAAGFACLTEISQVGVYETLTELTDSLATGLR 339
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 149/368 (40%), Gaps = 36/368 (9%)
Query: 9 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY 68
++S +PL E+ +GS VYD++G +Y+D + G + R+V A L +
Sbjct: 29 FKSVGXNPLFXERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEA----LKAVAER 84
Query: 69 HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128
+ + T+ LAK ++E + ++ + NSG+EA + ++L Y GR
Sbjct: 85 GTSFGAPTEIENKLAKLVIERVPSIEIVRX--VNSGTEATXSALRLARGYT---GRNKIL 139
Query: 129 KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188
KFI HG +L+ + SG+ L LP D P P + T
Sbjct: 140 KFIGCYHG-HGDSLLIKAGSGVATL----GLP-------DSPGV-----PEGVAKNTITV 182
Query: 189 LANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEV 246
N+LE + ++ + IA I E + E ++ V ++ L I DEV
Sbjct: 183 AYNDLESVKYAFEQFGDDIACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIFDEV 242
Query: 247 ICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFS 306
F R+ G Y + PDL K + +P+GA E I Q G
Sbjct: 243 XTGF-RVAYNCGQGYYGVTPDLTCLGKVIGGG-LPVGAYGGKAE----IXRQVAPSGPIY 296
Query: 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV-KAFSDSPIIGEIRGTGL 365
T SG+P++ A E L + VE K A + G+ KA I I G
Sbjct: 297 QAGTLSGNPLAXAAGYETLVQLTPESYVEFERK-AEXLEAGLRKAAEKHGIPHHINRAGS 355
Query: 366 ILGTEFAD 373
+G F D
Sbjct: 356 XIGIFFTD 363
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 146/341 (42%), Gaps = 41/341 (12%)
Query: 6 TAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTL 65
TA ++ D H L I ++G + DV+G YLD G LG PR+ AA L+
Sbjct: 30 TADTRAFDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALS-- 87
Query: 66 PFYHSFWNRTTKP-SLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR 124
H + P + A+ ++ F + + K+ FT SG+E +++ +
Sbjct: 88 ---HGVQYAASHPLEVRWAERIVAAFPSIR--KLRFTGSGTETTLLALRVARAFTG---- 138
Query: 125 PNKKKFIAR-QKSYHGSTLIAASLSGLPALHQKFD-LPAPFVLHTDCPHYWRYAHPGETE 182
++ I R + YHG +AS + FD PAP VL P T
Sbjct: 139 ---RRMILRFEGHYHGWHDFSAS-----GYNSHFDGQPAPGVL------------PETTA 178
Query: 183 EEYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDIL 240
R +++E + + IAAFIAE ++ + + ++Y L
Sbjct: 179 NTLLIR-PDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGAL 237
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
FI DEVI F R+G ++PDL AKA S+ +P G + +V V+ S+
Sbjct: 238 FILDEVISGF-RVGNHGMQALLDVQPDLTCLAKA-SAGGLPGGILGGREDVMGVLSRGSD 295
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIA 341
H T++G+P++ A AI A+ E ++ ++N +
Sbjct: 296 R--KVLHQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLG 334
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 91/407 (22%), Positives = 155/407 (38%), Gaps = 55/407 (13%)
Query: 77 KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWY-----YNNALGRPNKK--- 128
+P+L A+ LL+ ++V+F+++GS A + +K+ + +N +K
Sbjct: 424 EPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIV 483
Query: 129 -KFIARQKSYHGSTLIAASLSGLPALHQKF-------------DLPAPFVLHTD------ 168
K IA + SYHG TL A P+ + F D P F+ +
Sbjct: 484 VKVIALRGSYHGDTLGAMEAQA-PSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLP 542
Query: 169 ------CPHYWRYAHPGETEEE----------YSTRLANNLEDLILKEGPETIAAFIAEX 212
P Y + E ++ YS L+ +L++ + A I E
Sbjct: 543 ESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEP 602
Query: 213 XXXXXXXXXXXXTYFEKVQA-VVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF 271
F++V + I I DEV F RLG + KPD+ F
Sbjct: 603 VIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACF 662
Query: 272 AKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE- 330
AK L+ +P+ L + V + S L + HG +YS H + CA A +A++ +K+
Sbjct: 663 AKLLTGGMVPLAVTLATDAVFDSFSGDSK-LKALLHGHSYSAHAMGCATAAKAIQWFKDP 721
Query: 331 ---RNIVEQVNKIAPKF-QDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWG 386
NI Q + + ++ V+ S + + G + E + S N + +
Sbjct: 722 ETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADAS-NSGYASLYA 780
Query: 387 IGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKAL 433
+ G+ R G+ I + SPE L++K K L
Sbjct: 781 KSLLI--MLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLTKLYKRL 825
>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form.
pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form
Length = 831
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 93/407 (22%), Positives = 157/407 (38%), Gaps = 55/407 (13%)
Query: 77 KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWY-----YNNALGRPNKK--- 128
+P+L A+ LL+ ++V+F+++GS A + +K + +N +K
Sbjct: 424 EPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKXAFRKFCVDHNFCEATEEEKHIV 483
Query: 129 -KFIARQKSYHGSTLIAASLSGLPALHQKF-------------DLPAPFVLHTD------ 168
K IA + SYHG TL A + P+ + F D P F+ +
Sbjct: 484 VKVIALRGSYHGDTL-GAXEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLP 542
Query: 169 ------CPHYWRYAHPGETEEE----------YSTRLANNLEDLILKEGPETIAAFIAEX 212
P Y + E ++ YS L+ +L++ + A I E
Sbjct: 543 ESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEP 602
Query: 213 XXXXXXXXXXXXTYFEKVQA-VVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF 271
F++V + I I DEV F RLG + KPD+ F
Sbjct: 603 VIHGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACF 662
Query: 272 AKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE- 330
AK L+ +P+ L + V + S L + HG +YS H CA A +A++ +K+
Sbjct: 663 AKLLTGGXVPLAVTLATDAVFDSFSGDSK-LKALLHGHSYSAHAXGCATAAKAIQWFKDP 721
Query: 331 ---RNIVEQVNKIAPKF-QDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWG 386
NI Q + + ++ V+ S + + G + E + S N + +
Sbjct: 722 ETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADAS-NSGYASLYA 780
Query: 387 IGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKAL 433
+ + G+ R G+ I + SPE L++K K L
Sbjct: 781 KSLLIXLR--EDGIFTRPLGNVIYLXCGPCTSPEICRRLLTKLYKRL 825
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 93/440 (21%), Positives = 172/440 (39%), Gaps = 54/440 (12%)
Query: 17 LVIEKSEGSYVYD-VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
L + +S GSY+ D + G++YLD + +ALG + P LV + + + +
Sbjct: 37 LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 76 TKPSLDLAKELLEMFTA----SKMAKVFFTNSGSEANDTQVKLVWYYNN----------A 121
S+ +A+ +E F + +FF G+ A + +K + + + A
Sbjct: 97 DVYSVAMAR-FVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 122 LGRPNKKKFIARQKSYHGSTLIAASLSG----LPALHQKFDLPAPFVLHTDCPHYWRYAH 177
LG + + + ++HG + SL+ + A KFD P D P Y
Sbjct: 156 LG----TQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWP-----RIDAP----YMR 202
Query: 178 PGETEEEYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVK 235
PG E + A L + P IA F+AE +F ++ +
Sbjct: 203 PGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCD 262
Query: 236 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVI 295
++D L I DEV G GT + + + PD+V+F K + G + EV++ +
Sbjct: 263 EFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRV--DEVADNV 320
Query: 296 HSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDS 354
+ + L S T+ G+ A L++ + + E+ + + + +D
Sbjct: 321 FAVPSRLNS-----TWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADF 375
Query: 355 P-IIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSP 413
P ++ + RG GL+ +E W ++ +++ D + P
Sbjct: 376 PAVVLDPRGRGLMCAFSLPTTADRDELIRQLW----------QRAVIVLPAGADTVRFRP 425
Query: 414 PFIMSPEEVDELISKYGKAL 433
P +S E+D I+ AL
Sbjct: 426 PLTVSTAEIDAAIAAVRSAL 445
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 93/440 (21%), Positives = 172/440 (39%), Gaps = 54/440 (12%)
Query: 17 LVIEKSEGSYVYD-VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
L + +S GSY+ D + G++YLD + +ALG + P LV + + + +
Sbjct: 37 LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 76 TKPSLDLAKELLEMFTA----SKMAKVFFTNSGSEANDTQVKLVWYYNN----------A 121
S+ +A+ +E F + +FF G+ A + +K + + + A
Sbjct: 97 DVYSVAMAR-FVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 122 LGRPNKKKFIARQKSYHGSTLIAASLSG----LPALHQKFDLPAPFVLHTDCPHYWRYAH 177
LG + + + ++HG + SL+ + A KFD P D P Y
Sbjct: 156 LG----TQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWP-----RIDAP----YMR 202
Query: 178 PGETEEEYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVK 235
PG E + A L + P IA F+AE +F ++ +
Sbjct: 203 PGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCD 262
Query: 236 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVI 295
++D L I DEV G GT + + + PD+V+F K + G + EV++ +
Sbjct: 263 EFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRV--DEVADNV 320
Query: 296 HSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDS 354
+ + L S T+ G+ A L++ + + E+ + + + +D
Sbjct: 321 FAVPSRLAS-----TWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADF 375
Query: 355 P-IIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSP 413
P ++ + RG GL+ +E W ++ +++ D + P
Sbjct: 376 PAVVLDPRGRGLMCAFSLPTTADRDELIRQLW----------QRAVIVLPAGADTVRFRP 425
Query: 414 PFIMSPEEVDELISKYGKAL 433
P +S E+D I+ AL
Sbjct: 426 PLTVSTAEIDAAIAAVRSAL 445
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 93/436 (21%), Positives = 171/436 (39%), Gaps = 46/436 (10%)
Query: 17 LVIEKSEGSYVYD-VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
L + +S GSY+ D + G++YLD + +ALG + P LV + + + +
Sbjct: 37 LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 76 TKPSLDLAKELLEMFTA----SKMAKVFFTNSGSEANDTQVKLVW----YYNNALGRPNK 127
S+ +A+ +E F + +FF G+ A + +K + +N A G
Sbjct: 97 DVYSVAMAR-FVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 128 --KKFIARQKSYHGSTLIAASLSG----LPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 181
+ + + ++HG + SL+ + A KFD P D P Y PG
Sbjct: 156 LGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWP-----RIDAP----YMRPGLD 206
Query: 182 EEEYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDI 239
E + A L + P IA F+AE +F ++ + ++D
Sbjct: 207 EPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDA 266
Query: 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQS 299
L I DEV G GT + + + PD+V+F K + G + EV++ + +
Sbjct: 267 LLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRV--DEVADNVFAVP 324
Query: 300 NTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSP-II 357
+ L S T+ G+ A L++ + + E+ + + + +D P ++
Sbjct: 325 SRLNS-----TWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVV 379
Query: 358 GEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIM 417
+ RG GL+ +E W ++ +++ D + PP +
Sbjct: 380 LDPRGRGLMCAFSLPTTADRDELIRQLW----------QRAVIVLPAGADTVRFRPPLTV 429
Query: 418 SPEEVDELISKYGKAL 433
S E+D I+ AL
Sbjct: 430 STAEIDAAIAAVRSAL 445
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 92/436 (21%), Positives = 171/436 (39%), Gaps = 46/436 (10%)
Query: 17 LVIEKSEGSYVYD-VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
L + +S GSY+ D + G++YLD + +ALG + P LV + + + +
Sbjct: 37 LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 76 TKPSLDLAKELLEMFTA----SKMAKVFFTNSGSEANDTQVKLVW----YYNNALGRPNK 127
S+ +A+ +E F + +FF G+ A + +K + +N A G
Sbjct: 97 DVYSVAMAR-FVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 128 --KKFIARQKSYHGSTLIAASLSG----LPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 181
+ + + ++HG + SL+ + A KFD P D P Y PG
Sbjct: 156 LGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWP-----RIDAP----YMRPGLD 206
Query: 182 EEEYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDI 239
E + A L + P IA F+AE +F ++ + ++D
Sbjct: 207 EPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDA 266
Query: 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQS 299
L I DEV G GT + + + PD+V+F K + G + EV++ + +
Sbjct: 267 LLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRV--DEVADNVFAVP 324
Query: 300 NTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSP-II 357
+ L S ++ G+ A L++ + + E+ + + + +D P ++
Sbjct: 325 SRLNS-----SWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVV 379
Query: 358 GEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIM 417
+ RG GL+ +E W ++ +++ D + PP +
Sbjct: 380 LDPRGRGLMCAFSLPTTADRDELIRQLW----------QRAVIVLPAGADTVRFRPPLTV 429
Query: 418 SPEEVDELISKYGKAL 433
S E+D I+ AL
Sbjct: 430 STAEIDAAIAAVRSAL 445
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 122/299 (40%), Gaps = 54/299 (18%)
Query: 20 EKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTT--- 76
E+S G+Y+ DV+G + LD + + +G S P LV N +F NR
Sbjct: 50 EESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNV----STFINRPALGI 105
Query: 77 KPSLDLAKELLEMFTA---SKMAKVFFTNSGSEANDTQVKLV--WY-------------- 117
P + ++L E + M+++ GS +N+ K + WY
Sbjct: 106 LPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEE 165
Query: 118 -----YNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQ----KFDLP-APFVLHT 167
N A G P+ ++ ++HG T+ + + A+H+ FD P APF
Sbjct: 166 LETCMINQAPGCPD-YSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFP--- 221
Query: 168 DCPHYWRYAHPGE----TEEEYSTRLANNLEDLILK--EGPETIAAFIAEXXXXXXXXXX 221
R +P E ++ R +EDLI+K + +T+A I E
Sbjct: 222 ------RLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNH 275
Query: 222 XXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIK--PDLVSFAKALSSA 278
+F K++ + +K+ F+ DEV G G + + + + D+++F+K + +
Sbjct: 276 ASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTG 334
>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AO9|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
Length = 454
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 120/312 (38%), Gaps = 48/312 (15%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
PL I + EG+ ++D +G +Y D +A G S P + A + N T
Sbjct: 70 PLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAM------QGGINLT 123
Query: 76 TKPSLD--LAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAR 133
L+ LA+ + E F ++ ++ FTNSG+EAN + ++ ++K +
Sbjct: 124 GHNLLEGRLARLICERF--PQIEQLRFTNSGTEANLMALTAALHFT------GRRKIVVF 175
Query: 134 QKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193
YHG L G A +P F++ P+ + T A
Sbjct: 176 SGGYHGGVL------GFGARPSPTTVPFDFLV---LPY-----------NDAQTARAQ-- 213
Query: 194 EDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRL 253
I + GPE IA + E + + ++ + L + DEV+ + RL
Sbjct: 214 ---IERHGPE-IAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RL 267
Query: 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSG 313
+K I+ DL + K + M GA +V + ++ G +H T++
Sbjct: 268 APHGLANKLGIRSDLTTLGKYIGGG-MSFGAFGGRADVMALFDPRT---GPLAHSGTFNN 323
Query: 314 HPVSCAVAIEAL 325
+ ++ A L
Sbjct: 324 NVMTMAAGYAGL 335
>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
Length = 465
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 73/330 (22%), Positives = 124/330 (37%), Gaps = 43/330 (13%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
PLVI + GS DV+G Y++ L G S P + AA L + +T
Sbjct: 83 PLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVE---RALAVGLNLSTQT 139
Query: 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 135
+L A+ + + F + + + FTNSG+EAN + A +K +A
Sbjct: 140 ENEAL-FAEAVCDRFPSIDLVR--FTNSGTEAN------LMALATATAITGRKTVLAFDG 190
Query: 136 SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLED 195
YHG L AS AP T+ P++ + E D
Sbjct: 191 GYHGGLLNFASGH------------AP----TNAPYHVVLGVYNDVE---------GTAD 225
Query: 196 LILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGT 255
L+ + G + AA + E + + ++A + L I DEV+ + RL
Sbjct: 226 LLKRHGHD-CAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTS--RLSG 282
Query: 256 MFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHP 315
+ I DL + K + M GA ++ E + G+F+H T++ +
Sbjct: 283 GGAQEMLGISADLTTLGKYIGGG-MSFGAFGGRRDLMERFDPARD--GAFAHAGTFNNNI 339
Query: 316 VSCAVAIEALKIYKERNIVEQVNKIAPKFQ 345
++ + AL R ++ +F+
Sbjct: 340 LTMSAGHAALTQIYTRQAASDLSASGDRFR 369
>pdb|3STH|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
Length = 361
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 90 FTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNK 127
F K + VF N+G NDT VKLV +Y+N G N+
Sbjct: 310 FVHCKFSSVFDINAGIMLNDTFVKLVSWYDNEWGYSNR 347
>pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
Length = 334
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 90 FTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 123
F S + +F +G E NDT VKLV +Y+N G
Sbjct: 285 FNGSNHSSIFDAGAGIELNDTFVKLVSWYDNEFG 318
>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3V1Y|O Chain O, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|A Chain A, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|B Chain B, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|C Chain C, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
Length = 337
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 90 FTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNK 127
F + +F +G ND VKLV +Y+N G N+
Sbjct: 288 FVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNR 325
>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
Length = 336
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 90 FTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNK 127
F + +F +G ND VKLV +Y+N G N+
Sbjct: 287 FVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNR 324
>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC4|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
Length = 330
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 90 FTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNK 127
F VF +G ND VKLV +Y+N G NK
Sbjct: 283 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNK 320
>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 331
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 90 FTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNK 127
F VF +G ND VKLV +Y+N G NK
Sbjct: 284 FNGEVXTSVFDAKAGIALNDNFVKLVSWYDNETGYSNK 321
>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAD|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1DC3|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC3|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC5|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC5|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC6|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes.
pdb|1DC6|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
Length = 330
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 90 FTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNK 127
F VF +G ND VKLV +Y+N G NK
Sbjct: 283 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNK 320
>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of
Glyceraldehyde 3- Phosphate Dehydrogenase From
Escherichia Coli
Length = 331
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 90 FTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNK 127
F VF +G ND VKLV +Y+N G NK
Sbjct: 284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNK 321
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,214,349
Number of Sequences: 62578
Number of extensions: 543318
Number of successful extensions: 1686
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1373
Number of HSP's gapped (non-prelim): 101
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)