Query 013204
Match_columns 447
No_of_seqs 170 out of 2010
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 06:09:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e3q_A Pyruvate transaminase; 100.0 2E-82 6.8E-87 628.5 45.5 438 1-440 35-472 (473)
2 4atq_A 4-aminobutyrate transam 100.0 2.6E-72 8.9E-77 554.2 45.6 401 13-435 44-454 (456)
3 3i5t_A Aminotransferase; pyrid 100.0 2E-69 6.8E-74 542.2 48.8 435 1-439 22-457 (476)
4 3hmu_A Aminotransferase, class 100.0 8.1E-70 2.8E-74 544.1 41.5 432 1-440 23-456 (472)
5 4a6r_A Omega transaminase; tra 100.0 1.8E-66 6.2E-71 519.7 45.2 436 1-442 18-455 (459)
6 3gju_A Putative aminotransfera 100.0 3.8E-66 1.3E-70 517.5 45.0 437 1-438 17-458 (460)
7 4ao9_A Beta-phenylalanine amin 100.0 6.1E-66 2.1E-70 506.2 36.7 379 12-437 66-447 (454)
8 4a0g_A Adenosylmethionine-8-am 100.0 2.4E-66 8.2E-71 545.4 26.3 431 1-436 342-828 (831)
9 3dod_A Adenosylmethionine-8-am 100.0 1.9E-63 6.4E-68 496.5 42.9 431 1-437 13-444 (448)
10 3tfu_A Adenosylmethionine-8-am 100.0 2E-62 6.7E-67 489.0 42.0 409 1-437 41-454 (457)
11 3n5m_A Adenosylmethionine-8-am 100.0 4.6E-60 1.6E-64 472.8 42.8 413 14-435 30-451 (452)
12 3oks_A 4-aminobutyrate transam 100.0 3.2E-59 1.1E-63 465.9 42.3 404 13-435 41-450 (451)
13 4ffc_A 4-aminobutyrate aminotr 100.0 5.9E-59 2E-63 464.1 43.4 402 13-437 44-450 (453)
14 3i4j_A Aminotransferase, class 100.0 4.5E-57 1.6E-61 448.3 44.9 412 1-436 4-428 (430)
15 3a8u_X Omega-amino acid--pyruv 100.0 3.8E-56 1.3E-60 444.2 41.9 427 1-436 19-447 (449)
16 1z7d_A Ornithine aminotransfer 100.0 3.6E-54 1.2E-58 427.3 42.0 383 14-439 46-432 (433)
17 2oat_A Ornithine aminotransfer 100.0 8.4E-54 2.9E-58 425.2 43.1 379 14-435 57-438 (439)
18 3l44_A Glutamate-1-semialdehyd 100.0 2.5E-53 8.5E-58 422.0 40.4 386 14-438 36-432 (434)
19 3nx3_A Acoat, acetylornithine 100.0 3.2E-53 1.1E-57 416.0 40.6 376 13-435 16-394 (395)
20 3dxv_A Alpha-amino-epsilon-cap 100.0 1.1E-52 3.6E-57 418.0 38.5 397 14-438 24-427 (439)
21 1zod_A DGD, 2,2-dialkylglycine 100.0 3.9E-52 1.3E-56 413.3 42.1 402 15-436 25-432 (433)
22 3k28_A Glutamate-1-semialdehyd 100.0 4.3E-53 1.5E-57 419.5 34.1 384 13-436 33-427 (429)
23 2pb2_A Acetylornithine/succiny 100.0 1.6E-52 5.6E-57 413.9 38.2 379 14-436 38-418 (420)
24 4e77_A Glutamate-1-semialdehyd 100.0 2.1E-52 7.1E-57 414.7 38.9 390 13-435 33-428 (429)
25 1ohv_A 4-aminobutyrate aminotr 100.0 3.9E-53 1.3E-57 423.6 32.9 395 14-436 44-471 (472)
26 2cjg_A L-lysine-epsilon aminot 100.0 4.8E-52 1.6E-56 413.9 35.8 396 14-436 32-448 (449)
27 1s0a_A Adenosylmethionine-8-am 100.0 1.5E-50 5.3E-55 401.3 45.3 408 1-435 13-423 (429)
28 3fq8_A Glutamate-1-semialdehyd 100.0 1.6E-51 5.6E-56 408.0 37.5 385 13-435 32-426 (427)
29 2yky_A Beta-transaminase; tran 100.0 4.8E-56 1.6E-60 439.3 0.0 379 14-438 81-462 (465)
30 2eo5_A 419AA long hypothetical 100.0 1.2E-48 4E-53 386.4 42.3 386 14-436 23-418 (419)
31 2epj_A Glutamate-1-semialdehyd 100.0 2.3E-49 8E-54 393.3 37.1 385 14-436 37-431 (434)
32 4adb_A Succinylornithine trans 100.0 1.5E-48 5E-53 384.2 39.8 382 13-438 19-402 (406)
33 2e7u_A Glutamate-1-semialdehyd 100.0 1.4E-48 4.7E-53 386.6 36.7 381 14-433 33-424 (424)
34 3ruy_A Ornithine aminotransfer 100.0 7.1E-48 2.4E-52 377.6 41.3 373 13-433 16-391 (392)
35 2cy8_A D-phgat, D-phenylglycin 100.0 1.6E-47 5.5E-52 382.2 34.3 385 14-438 38-437 (453)
36 1sff_A 4-aminobutyrate aminotr 100.0 9.9E-46 3.4E-50 366.4 42.0 396 15-436 23-424 (426)
37 2ord_A Acoat, acetylornithine 100.0 7.4E-45 2.5E-49 356.8 35.7 375 13-435 20-396 (397)
38 1vef_A Acetylornithine/acetyl- 100.0 1.1E-42 3.8E-47 341.1 37.1 368 13-433 25-394 (395)
39 2eh6_A Acoat, acetylornithine 100.0 7.5E-41 2.6E-45 325.6 39.2 366 14-433 9-375 (375)
40 2w8t_A SPT, serine palmitoyltr 100.0 5.2E-34 1.8E-38 282.2 33.0 350 16-438 47-417 (427)
41 3l8a_A METC, putative aminotra 100.0 8.1E-35 2.8E-39 287.6 25.2 356 15-434 41-420 (421)
42 3tqx_A 2-amino-3-ketobutyrate 100.0 6.1E-32 2.1E-36 264.8 31.9 349 15-436 26-396 (399)
43 1fc4_A 2-amino-3-ketobutyrate 100.0 4.7E-32 1.6E-36 266.0 29.8 351 14-436 26-397 (401)
44 3dzz_A Putative pyridoxal 5'-p 100.0 8.6E-32 2.9E-36 263.0 26.1 359 14-436 8-389 (391)
45 3kki_A CAI-1 autoinducer synth 100.0 2.6E-31 8.9E-36 261.4 27.1 338 21-435 47-403 (409)
46 3a2b_A Serine palmitoyltransfe 100.0 2.7E-30 9.1E-35 253.3 31.6 349 14-436 25-392 (398)
47 3fdb_A Beta C-S lyase, putativ 100.0 3.4E-31 1.2E-35 257.6 24.0 350 17-435 7-375 (377)
48 1bs0_A Protein (8-amino-7-oxon 100.0 8.3E-30 2.9E-34 248.5 30.5 344 14-432 21-383 (384)
49 3kax_A Aminotransferase, class 100.0 6.8E-30 2.3E-34 248.8 26.9 356 16-433 6-382 (383)
50 1d2f_A MALY protein; aminotran 100.0 7.4E-29 2.5E-33 242.3 31.3 356 18-436 8-389 (390)
51 4dq6_A Putative pyridoxal phos 100.0 2.4E-29 8.2E-34 245.7 23.6 353 17-433 11-390 (391)
52 3ftb_A Histidinol-phosphate am 100.0 4.2E-28 1.4E-32 234.3 29.2 338 16-434 8-359 (361)
53 1c7n_A Cystalysin; transferase 100.0 7E-29 2.4E-33 243.2 23.5 359 18-438 9-395 (399)
54 3nra_A Aspartate aminotransfer 100.0 2.7E-29 9.2E-34 246.7 17.0 364 17-437 20-406 (407)
55 1yiz_A Kynurenine aminotransfe 100.0 8.3E-28 2.8E-32 237.9 27.4 358 33-434 37-427 (429)
56 3jtx_A Aminotransferase; NP_28 100.0 2.9E-28 1E-32 238.5 22.5 352 15-433 12-395 (396)
57 2z61_A Probable aspartate amin 100.0 9.9E-28 3.4E-32 232.6 25.9 327 31-434 27-369 (370)
58 2zc0_A Alanine glyoxylate tran 100.0 3.1E-27 1E-31 232.1 29.6 345 31-436 32-404 (407)
59 3ly1_A Putative histidinol-pho 100.0 1.5E-27 5E-32 229.9 26.4 337 22-435 5-351 (354)
60 3h14_A Aminotransferase, class 100.0 1.7E-27 5.8E-32 232.7 26.3 342 30-438 28-384 (391)
61 1j32_A Aspartate aminotransfer 100.0 2.8E-27 9.6E-32 230.9 27.6 345 30-436 27-387 (388)
62 1lc5_A COBD, L-threonine-O-3-p 100.0 2.1E-27 7E-32 229.9 26.3 329 29-436 20-360 (364)
63 3euc_A Histidinol-phosphate am 100.0 5.5E-27 1.9E-31 227.1 28.8 328 32-434 29-366 (367)
64 2dou_A Probable N-succinyldiam 100.0 9.5E-28 3.2E-32 233.3 23.1 333 30-433 22-375 (376)
65 1gd9_A Aspartate aminotransfer 100.0 4.6E-27 1.6E-31 229.5 27.8 341 33-435 26-385 (389)
66 2bwn_A 5-aminolevulinate synth 100.0 1.7E-26 5.7E-31 226.4 31.4 336 31-436 44-400 (401)
67 1vp4_A Aminotransferase, putat 100.0 3.7E-27 1.3E-31 232.9 26.8 351 32-439 42-421 (425)
68 2x5d_A Probable aminotransfera 100.0 4.8E-27 1.7E-31 231.2 27.3 343 30-437 34-399 (412)
69 3dyd_A Tyrosine aminotransfera 100.0 1.2E-26 4E-31 229.4 29.4 349 30-437 51-425 (427)
70 3ffh_A Histidinol-phosphate am 100.0 1.2E-26 4.2E-31 224.2 28.7 323 31-432 30-362 (363)
71 3ezs_A Aminotransferase ASPB; 100.0 3.2E-27 1.1E-31 229.5 24.4 333 30-435 21-374 (376)
72 2gb3_A Aspartate aminotransfer 100.0 1.1E-26 3.7E-31 228.5 28.1 342 30-438 40-404 (409)
73 1o4s_A Aspartate aminotransfer 100.0 5.4E-27 1.8E-31 229.0 25.1 338 31-434 39-387 (389)
74 3b46_A Aminotransferase BNA3; 100.0 3.9E-27 1.3E-31 234.2 23.9 356 31-431 55-442 (447)
75 2zyj_A Alpha-aminodipate amino 100.0 5.7E-27 1.9E-31 229.5 24.0 343 32-437 31-394 (397)
76 1xi9_A Putative transaminase; 100.0 7.5E-27 2.6E-31 229.3 24.5 347 30-436 35-403 (406)
77 2o1b_A Aminotransferase, class 100.0 5.1E-27 1.7E-31 230.4 23.2 339 31-435 45-402 (404)
78 1v2d_A Glutamine aminotransfer 100.0 7.2E-27 2.4E-31 227.5 24.0 331 34-440 26-375 (381)
79 3ele_A Amino transferase; RER0 100.0 1.6E-26 5.6E-31 226.2 26.7 339 31-437 33-397 (398)
80 3aow_A Putative uncharacterize 100.0 3.3E-26 1.1E-30 227.3 29.1 346 32-436 75-445 (448)
81 3b1d_A Betac-S lyase; HET: PLP 99.9 3.2E-30 1.1E-34 252.2 0.0 353 17-434 13-391 (392)
82 3g0t_A Putative aminotransfera 100.0 2.8E-26 9.5E-31 227.4 27.8 346 25-435 36-436 (437)
83 3hdo_A Histidinol-phosphate am 99.9 2.6E-26 9E-31 221.8 25.2 326 30-435 23-354 (360)
84 3cq5_A Histidinol-phosphate am 99.9 2.1E-25 7.3E-30 216.1 31.0 324 36-434 33-366 (369)
85 2x5f_A Aspartate_tyrosine_phen 99.9 1.6E-26 5.5E-31 228.7 22.9 346 33-436 47-429 (430)
86 2o0r_A RV0858C (N-succinyldiam 99.9 3.6E-26 1.2E-30 224.9 24.7 342 34-438 26-398 (411)
87 3op7_A Aminotransferase class 99.9 3.4E-26 1.2E-30 222.2 24.1 319 56-438 46-373 (375)
88 3qgu_A LL-diaminopimelate amin 99.9 2E-26 6.7E-31 229.4 22.6 346 30-436 66-440 (449)
89 1u08_A Hypothetical aminotrans 99.9 1.3E-25 4.6E-30 218.8 27.9 336 33-431 30-385 (386)
90 3piu_A 1-aminocyclopropane-1-c 99.9 2.4E-26 8.3E-31 227.8 22.7 357 28-437 31-433 (435)
91 3fvs_A Kynurenine--oxoglutarat 99.9 8.1E-26 2.8E-30 223.1 26.3 362 32-435 27-421 (422)
92 3fkd_A L-threonine-O-3-phospha 99.9 1.7E-25 5.7E-30 215.2 27.5 329 19-436 1-342 (350)
93 1kmj_A Selenocysteine lyase; p 99.9 5.9E-25 2E-29 215.5 30.4 330 48-436 33-405 (406)
94 1ajs_A Aspartate aminotransfer 99.9 4.6E-26 1.6E-30 224.2 21.1 346 31-435 28-410 (412)
95 3get_A Histidinol-phosphate am 99.9 3E-25 1E-29 214.7 26.5 324 32-433 29-364 (365)
96 3f9t_A TDC, L-tyrosine decarbo 99.9 1.3E-24 4.6E-29 212.1 30.9 332 50-434 42-396 (397)
97 1t3i_A Probable cysteine desul 99.9 4.9E-25 1.7E-29 217.1 28.0 348 31-438 25-415 (420)
98 1elu_A L-cysteine/L-cystine C- 99.9 2.4E-25 8.2E-30 217.1 25.3 338 31-432 15-388 (390)
99 1iay_A ACC synthase 2, 1-amino 99.9 1.6E-25 5.6E-30 221.3 23.6 348 33-435 36-426 (428)
100 3e2y_A Kynurenine-oxoglutarate 99.9 8.8E-25 3E-29 214.8 28.6 357 32-431 22-408 (410)
101 3ke3_A Putative serine-pyruvat 99.9 1.6E-25 5.3E-30 217.8 22.8 339 26-437 5-377 (379)
102 1fg7_A Histidinol phosphate am 99.9 3.2E-25 1.1E-29 213.8 24.7 316 32-431 28-353 (356)
103 2q7w_A Aspartate aminotransfer 99.9 3.1E-26 1.1E-30 224.0 17.5 340 27-432 20-395 (396)
104 3lvm_A Cysteine desulfurase; s 99.9 5.2E-25 1.8E-29 217.3 26.0 344 30-438 20-401 (423)
105 2dr1_A PH1308 protein, 386AA l 99.9 3.7E-24 1.3E-28 208.4 30.6 339 32-439 19-382 (386)
106 3ei9_A LL-diaminopimelate amin 99.9 7.3E-25 2.5E-29 216.9 25.4 347 29-433 52-425 (432)
107 3rq1_A Aminotransferase class 99.9 5E-25 1.7E-29 217.1 23.6 343 32-436 37-415 (418)
108 3t18_A Aminotransferase class 99.9 4.8E-25 1.6E-29 216.9 22.8 345 32-437 36-411 (413)
109 1bw0_A TAT, protein (tyrosine 99.9 3.8E-24 1.3E-28 210.7 29.2 350 32-437 32-414 (416)
110 3asa_A LL-diaminopimelate amin 99.9 8.3E-25 2.8E-29 214.3 23.9 337 31-436 31-393 (400)
111 1vjo_A Alanine--glyoxylate ami 99.9 2.4E-24 8.3E-29 210.4 26.9 331 31-433 32-392 (393)
112 1b5p_A Protein (aspartate amin 99.9 6.5E-24 2.2E-28 206.9 27.7 341 31-434 29-383 (385)
113 2e7j_A SEP-tRNA:Cys-tRNA synth 99.9 3.2E-25 1.1E-29 214.8 18.4 330 33-435 9-369 (371)
114 3zrp_A Serine-pyruvate aminotr 99.9 6.9E-24 2.3E-28 206.3 26.8 322 50-437 13-364 (384)
115 2ay1_A Aroat, aromatic amino a 99.9 2.7E-25 9.2E-30 217.3 16.6 339 31-432 24-392 (394)
116 1qz9_A Kynureninase; kynurenin 99.9 6.6E-24 2.3E-28 208.9 26.4 337 31-436 27-402 (416)
117 2dkj_A Serine hydroxymethyltra 99.9 5E-24 1.7E-28 209.1 23.5 342 33-445 23-402 (407)
118 1svv_A Threonine aldolase; str 99.9 5.2E-24 1.8E-28 205.2 23.1 329 35-436 15-358 (359)
119 3kgw_A Alanine-glyoxylate amin 99.9 5.8E-24 2E-28 207.4 23.6 325 50-437 34-389 (393)
120 1ax4_A Tryptophanase; tryptoph 99.9 2E-23 7E-28 208.6 26.9 361 31-437 41-442 (467)
121 1eg5_A Aminotransferase; PLP-d 99.9 3.3E-23 1.1E-27 201.4 27.4 337 34-438 3-378 (384)
122 3cai_A Possible aminotransfera 99.9 3.1E-23 1.1E-27 203.4 27.0 336 31-431 25-404 (406)
123 4f4e_A Aromatic-amino-acid ami 99.9 8E-24 2.7E-28 208.7 21.2 342 32-433 48-419 (420)
124 2r2n_A Kynurenine/alpha-aminoa 99.9 1E-22 3.6E-27 201.0 29.1 305 74-435 79-423 (425)
125 3g7q_A Valine-pyruvate aminotr 99.9 2E-23 6.8E-28 205.5 23.3 309 78-438 76-415 (417)
126 2oqx_A Tryptophanase; lyase, p 99.9 4.7E-24 1.6E-28 213.2 18.8 370 23-437 30-443 (467)
127 1m32_A 2-aminoethylphosphonate 99.9 3.2E-23 1.1E-27 200.1 23.7 333 35-435 5-364 (366)
128 3ez1_A Aminotransferase MOCR f 99.9 1.1E-23 3.8E-28 207.9 20.3 306 76-438 69-417 (423)
129 3nnk_A Ureidoglycine-glyoxylat 99.9 5.4E-23 1.9E-27 201.9 25.0 325 50-437 24-391 (411)
130 2z9v_A Aspartate aminotransfer 99.9 1.1E-22 3.8E-27 198.5 26.2 338 31-437 7-372 (392)
131 3f0h_A Aminotransferase; RER07 99.9 1.2E-22 4E-27 197.2 25.5 318 50-434 30-372 (376)
132 4hvk_A Probable cysteine desul 99.9 1.3E-22 4.4E-27 197.0 25.6 339 34-438 2-375 (382)
133 3fsl_A Aromatic-amino-acid ami 99.9 2.5E-23 8.5E-28 203.5 20.4 341 32-432 25-396 (397)
134 3p1t_A Putative histidinol-pho 99.9 3.3E-22 1.1E-26 191.0 27.7 316 31-434 14-335 (337)
135 2huf_A Alanine glyoxylate amin 99.9 1.1E-22 3.7E-27 198.6 24.4 340 30-439 16-386 (393)
136 3e9k_A Kynureninase; kynurenin 99.9 3.2E-23 1.1E-27 207.1 20.0 352 31-437 66-462 (465)
137 3if2_A Aminotransferase; YP_26 99.9 5.5E-23 1.9E-27 204.2 21.5 311 79-437 85-441 (444)
138 1yaa_A Aspartate aminotransfer 99.9 4E-23 1.4E-27 203.2 20.0 338 31-435 27-410 (412)
139 3d6k_A Putative aminotransfera 99.9 3.3E-23 1.1E-27 204.4 18.5 347 35-438 34-420 (422)
140 2ez2_A Beta-tyrosinase, tyrosi 99.9 3.5E-22 1.2E-26 199.1 25.8 352 31-436 40-431 (456)
141 1v72_A Aldolase; PLP-dependent 99.9 1.2E-22 4E-27 195.5 21.6 327 32-437 6-354 (356)
142 2oga_A Transaminase; PLP-depen 99.9 1.7E-22 5.7E-27 197.8 22.7 327 33-436 30-396 (399)
143 1uu1_A Histidinol-phosphate am 99.9 1.6E-22 5.6E-27 193.1 21.6 312 33-432 19-334 (335)
144 4eb5_A Probable cysteine desul 99.9 1.3E-21 4.6E-26 190.0 27.8 338 34-438 2-375 (382)
145 3mad_A Sphingosine-1-phosphate 99.9 1.4E-21 4.6E-26 197.7 28.3 336 50-438 108-471 (514)
146 3isl_A Purine catabolism prote 99.9 4.9E-22 1.7E-26 195.4 24.4 331 46-436 14-390 (416)
147 2ch1_A 3-hydroxykynurenine tra 99.9 5.1E-22 1.8E-26 194.0 24.0 324 50-437 29-384 (396)
148 1iug_A Putative aspartate amin 99.9 4.7E-22 1.6E-26 191.0 22.8 318 50-436 12-348 (352)
149 3ppl_A Aspartate aminotransfer 99.9 9.5E-23 3.3E-27 201.4 17.5 304 77-438 78-422 (427)
150 2yrr_A Aminotransferase, class 99.9 2.2E-22 7.5E-27 193.2 19.5 321 50-435 11-352 (353)
151 1cs1_A CGS, protein (cystathio 99.9 2E-21 6.8E-26 189.3 26.4 282 74-432 49-383 (386)
152 2vi8_A Serine hydroxymethyltra 99.9 9.5E-22 3.3E-26 192.7 23.7 333 33-437 24-388 (405)
153 3a9z_A Selenocysteine lyase; P 99.9 4.2E-22 1.4E-26 197.0 20.7 361 30-437 16-429 (432)
154 3vax_A Putative uncharacterize 99.9 1.6E-22 5.4E-27 197.9 17.0 341 29-435 17-399 (400)
155 2cb1_A O-acetyl homoserine sul 99.9 8.7E-21 3E-25 186.4 29.4 305 45-431 28-411 (412)
156 2rfv_A Methionine gamma-lyase; 99.9 1.2E-21 4.1E-26 191.7 22.4 285 74-432 61-396 (398)
157 1wyu_B Glycine dehydrogenase s 99.9 9.7E-21 3.3E-25 189.3 28.4 333 48-435 76-440 (474)
158 3f6t_A Aspartate aminotransfer 99.9 2.4E-22 8.1E-27 203.6 15.8 361 45-441 111-530 (533)
159 3meb_A Aspartate aminotransfer 99.9 1.4E-21 4.7E-26 194.2 20.8 339 31-435 46-443 (448)
160 3tcm_A Alanine aminotransferas 99.9 4E-20 1.4E-24 186.0 31.3 344 50-440 107-498 (500)
161 1gc0_A Methionine gamma-lyase; 99.9 1.8E-20 6E-25 183.3 27.8 282 74-432 62-397 (398)
162 3mc6_A Sphingosine-1-phosphate 99.9 3.6E-21 1.2E-25 193.9 23.2 336 50-438 76-439 (497)
163 1jg8_A L-ALLO-threonine aldola 99.9 6.2E-21 2.1E-25 182.9 23.6 331 33-435 3-345 (347)
164 4eu1_A Mitochondrial aspartate 99.9 1E-21 3.5E-26 192.9 16.4 336 32-433 40-408 (409)
165 3qhx_A Cystathionine gamma-syn 99.9 1.4E-20 4.9E-25 183.5 23.6 279 74-429 63-391 (392)
166 2po3_A 4-dehydrase; external a 99.9 1.9E-19 6.4E-24 177.6 30.7 325 45-444 26-394 (424)
167 3ecd_A Serine hydroxymethyltra 99.9 3E-20 1E-24 183.1 24.9 330 35-436 34-397 (425)
168 2qma_A Diaminobutyrate-pyruvat 99.9 2.8E-20 9.4E-25 187.3 24.8 357 31-436 99-496 (497)
169 2fnu_A Aminotransferase; prote 99.9 1.2E-20 4.2E-25 182.7 21.2 319 49-436 10-372 (375)
170 3lws_A Aromatic amino acid bet 99.9 7.1E-21 2.4E-25 183.3 19.3 334 33-433 3-356 (357)
171 1mdo_A ARNB aminotransferase; 99.9 1.1E-19 3.8E-24 177.2 27.3 314 50-436 18-386 (393)
172 3h7f_A Serine hydroxymethyltra 99.9 4E-20 1.4E-24 183.6 24.4 329 50-445 57-431 (447)
173 3uwc_A Nucleotide-sugar aminot 99.9 4.6E-20 1.6E-24 178.7 23.5 309 54-435 21-370 (374)
174 3frk_A QDTB; aminotransferase, 99.9 3.4E-20 1.2E-24 179.7 21.4 316 46-435 7-367 (373)
175 2bkw_A Alanine-glyoxylate amin 99.9 4.5E-20 1.5E-24 179.4 22.2 323 50-435 16-383 (385)
176 3dr4_A Putative perosamine syn 99.9 2.2E-20 7.4E-25 182.3 19.8 313 51-433 35-390 (391)
177 3n0l_A Serine hydroxymethyltra 99.9 3.2E-19 1.1E-23 175.4 28.0 321 50-435 37-388 (417)
178 1pff_A Methionine gamma-lyase; 99.9 7.3E-20 2.5E-24 174.3 22.6 274 81-432 2-330 (331)
179 3pj0_A LMO0305 protein; struct 99.9 1E-20 3.4E-25 182.4 16.8 315 50-432 27-358 (359)
180 1b9h_A AHBA synthase, protein 99.9 4.9E-19 1.7E-23 172.4 28.8 318 51-435 16-387 (388)
181 3acz_A Methionine gamma-lyase; 99.8 3.2E-19 1.1E-23 173.8 26.8 253 74-404 56-330 (389)
182 3ihj_A Alanine aminotransferas 99.8 2.1E-19 7.3E-24 180.4 25.8 344 51-440 103-497 (498)
183 1e5e_A MGL, methionine gamma-l 99.8 1.8E-19 6.1E-24 176.4 23.9 281 75-436 60-395 (404)
184 3ffr_A Phosphoserine aminotran 99.8 3.2E-19 1.1E-23 171.7 25.3 317 50-433 15-361 (362)
185 7aat_A Aspartate aminotransfer 99.8 2E-19 7E-24 175.9 22.8 337 34-433 29-400 (401)
186 3nyt_A Aminotransferase WBPE; 99.8 3.7E-19 1.3E-23 172.0 23.6 305 52-432 16-360 (367)
187 3gbx_A Serine hydroxymethyltra 99.8 1.7E-19 5.8E-24 177.4 21.1 319 50-435 42-395 (420)
188 3ndn_A O-succinylhomoserine su 99.8 1.9E-19 6.7E-24 176.3 20.5 239 73-373 77-335 (414)
189 2aeu_A Hypothetical protein MJ 99.8 1.2E-19 4E-24 175.9 18.3 323 31-436 25-371 (374)
190 2c81_A Glutamine-2-deoxy-scyll 99.8 2.5E-18 8.5E-23 169.2 27.5 324 50-436 14-414 (418)
191 1o69_A Aminotransferase; struc 99.8 3.5E-18 1.2E-22 166.8 26.7 326 51-434 11-385 (394)
192 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.8 1.1E-17 3.9E-22 165.4 29.1 333 31-434 29-434 (437)
193 3b8x_A WBDK, pyridoxamine 5-ph 99.8 1.9E-17 6.5E-22 161.3 29.9 315 50-429 13-389 (390)
194 2jis_A Cysteine sulfinic acid 99.8 3.2E-17 1.1E-21 165.5 31.9 326 79-435 150-514 (515)
195 2ctz_A O-acetyl-L-homoserine s 99.8 1.9E-18 6.4E-23 170.1 21.5 240 75-373 56-346 (421)
196 4h51_A Aspartate aminotransfer 99.8 1.4E-18 4.8E-23 169.7 20.1 356 31-439 42-420 (420)
197 2dgk_A GAD-beta, GADB, glutama 99.8 4.1E-17 1.4E-21 162.1 31.1 346 49-438 53-436 (452)
198 3nmy_A Xometc, cystathionine g 99.8 1.1E-18 3.6E-23 170.3 19.2 232 74-373 64-322 (400)
199 2okj_A Glutamate decarboxylase 99.8 3.7E-17 1.3E-21 164.7 30.7 328 80-435 135-501 (504)
200 2zy4_A L-aspartate beta-decarb 99.8 4.6E-18 1.6E-22 172.2 23.9 364 35-441 106-527 (546)
201 1qgn_A Protein (cystathionine 99.8 9E-18 3.1E-22 165.4 24.2 284 75-435 112-444 (445)
202 1ibj_A CBL, cystathionine beta 99.8 9.3E-19 3.2E-23 173.7 16.4 307 49-435 103-461 (464)
203 1n8p_A Cystathionine gamma-lya 99.8 1E-17 3.5E-22 163.2 23.1 282 75-432 53-391 (393)
204 3cog_A Cystathionine gamma-lya 99.8 5.4E-18 1.8E-22 165.7 20.8 281 75-433 65-399 (403)
205 3k7y_A Aspartate aminotransfer 99.8 1.3E-17 4.3E-22 162.8 22.1 342 33-434 29-403 (405)
206 2x3l_A ORN/Lys/Arg decarboxyla 99.8 5.4E-18 1.8E-22 167.9 17.8 289 75-436 55-353 (446)
207 3vp6_A Glutamate decarboxylase 99.8 1E-15 3.5E-20 154.1 31.4 330 80-436 138-505 (511)
208 3hbx_A GAD 1, glutamate decarb 99.8 6.6E-16 2.3E-20 155.2 29.5 344 50-438 68-446 (502)
209 2z67_A O-phosphoseryl-tRNA(SEC 99.7 1.9E-16 6.5E-21 157.4 24.4 289 79-433 135-455 (456)
210 1rv3_A Serine hydroxymethyltra 99.7 1E-16 3.6E-21 160.3 22.5 338 35-435 46-430 (483)
211 1w23_A Phosphoserine aminotran 99.7 6E-17 2.1E-21 155.8 17.6 316 50-435 14-359 (360)
212 2fq6_A Cystathionine beta-lyas 99.7 1.5E-16 5E-21 155.7 20.1 285 75-431 80-413 (415)
213 2a7v_A Serine hydroxymethyltra 99.7 5.6E-16 1.9E-20 153.9 24.1 320 50-435 66-440 (490)
214 4e1o_A HDC, histidine decarbox 99.7 2.2E-15 7.6E-20 150.6 28.3 298 97-436 147-478 (481)
215 2fyf_A PSAT, phosphoserine ami 99.7 1.4E-16 4.8E-21 155.6 18.4 317 50-435 51-397 (398)
216 1js3_A DDC;, DOPA decarboxylas 99.7 5.3E-15 1.8E-19 148.3 29.6 316 81-439 117-477 (486)
217 3k40_A Aromatic-L-amino-acid d 99.7 3.4E-15 1.2E-19 148.9 26.1 298 97-437 141-472 (475)
218 3ri6_A O-acetylhomoserine sulf 99.7 8.5E-16 2.9E-20 150.8 20.8 232 75-372 80-355 (430)
219 3ju7_A Putative PLP-dependent 99.7 3.7E-15 1.3E-19 144.3 24.2 318 50-435 14-374 (377)
220 2c0r_A PSAT, phosphoserine ami 99.7 3E-16 1E-20 151.2 16.4 330 32-435 3-360 (362)
221 3bwn_A AT1G70560, L-tryptophan 99.7 3.4E-16 1.2E-20 152.5 16.1 277 80-435 71-386 (391)
222 3ht4_A Aluminum resistance pro 99.7 2.1E-15 7.1E-20 148.1 19.4 297 50-399 36-345 (431)
223 1c4k_A Protein (ornithine deca 99.7 9.8E-15 3.4E-19 151.4 23.5 321 77-437 173-567 (730)
224 3e77_A Phosphoserine aminotran 99.6 5.9E-15 2E-19 141.6 16.2 327 47-435 21-374 (377)
225 3qm2_A Phosphoserine aminotran 99.6 5E-15 1.7E-19 142.9 12.9 331 33-435 27-384 (386)
226 3jzl_A Putative cystathionine 99.6 1.1E-13 3.8E-18 134.7 21.8 256 50-351 30-301 (409)
227 2vyc_A Biodegradative arginine 99.6 1.5E-13 5.3E-18 143.6 24.1 321 76-437 204-606 (755)
228 3m5u_A Phosphoserine aminotran 99.6 4.7E-14 1.6E-18 134.8 18.5 317 50-435 16-359 (361)
229 2hox_A ALLIIN lyase 1; cystein 99.6 3.2E-14 1.1E-18 140.0 15.9 324 32-434 55-423 (427)
230 1wyu_A Glycine dehydrogenase ( 99.5 2E-13 6.9E-18 134.9 19.5 291 76-433 107-437 (438)
231 3i16_A Aluminum resistance pro 99.5 1.3E-12 4.4E-17 127.6 24.8 290 51-399 45-356 (427)
232 3hvy_A Cystathionine beta-lyas 99.5 1.5E-12 5.1E-17 127.2 23.5 258 50-351 45-318 (427)
233 3n75_A LDC, lysine decarboxyla 99.5 3.9E-12 1.3E-16 130.9 23.0 316 75-435 193-559 (715)
234 3hl2_A O-phosphoseryl-tRNA(SEC 99.5 1.6E-11 5.4E-16 117.7 24.4 295 95-440 134-465 (501)
235 3bc8_A O-phosphoseryl-tRNA(SEC 99.4 2E-10 6.9E-15 111.5 26.1 311 79-440 100-447 (450)
236 3ou5_A Serine hydroxymethyltra 99.1 7.7E-08 2.6E-12 92.0 26.7 212 190-434 192-439 (490)
237 1tks_A 3,4-dihydroxy-2-butanon 50.2 19 0.00066 30.2 4.6 37 203-243 158-194 (204)
238 2wuj_A Septum site-determining 49.7 20 0.00069 23.2 3.7 31 416-446 19-49 (57)
239 2yqr_A KIAA0907 protein; struc 47.4 71 0.0024 24.2 7.1 37 408-447 75-111 (119)
240 2l5g_B Putative uncharacterize 46.3 16 0.00054 21.8 2.5 29 418-446 3-31 (42)
241 3mio_A DHBP synthase, 3,4-dihy 44.4 35 0.0012 28.8 5.3 37 203-243 157-194 (206)
242 1snn_A DHBP synthase, 3,4-dihy 39.1 39 0.0013 28.9 4.9 39 203-246 177-216 (227)
243 1k7c_A Rhamnogalacturonan acet 37.2 49 0.0017 28.2 5.5 38 205-242 126-167 (233)
244 1g57_A DHBP synthase, 3,4-dihy 35.3 56 0.0019 27.7 5.2 35 204-243 167-201 (217)
245 3pzt_A Endoglucanase; alpha/be 33.1 1E+02 0.0035 27.9 7.3 52 191-245 72-125 (327)
246 1vhx_A Putative holliday junct 32.5 61 0.0021 25.7 4.9 56 190-248 44-101 (150)
247 1k4i_A 3,4-dihydroxy-2-butanon 30.6 60 0.002 27.8 4.6 37 203-243 166-212 (233)
248 3fx7_A Putative uncharacterize 27.7 92 0.0031 22.5 4.5 31 415-445 4-34 (94)
249 3v7e_A Ribosome-associated pro 25.4 1.5E+02 0.005 20.5 5.3 47 191-248 17-63 (82)
250 1iv0_A Hypothetical protein; r 25.1 1.7E+02 0.0057 21.2 5.7 53 189-248 39-96 (98)
251 3o63_A Probable thiamine-phosp 23.6 53 0.0018 28.5 3.2 19 227-245 85-103 (243)
252 2lbw_A H/ACA ribonucleoprotein 22.6 1.7E+02 0.0058 22.0 5.6 44 191-244 26-69 (121)
253 1ivn_A Thioesterase I; hydrola 21.1 60 0.002 26.3 3.0 19 224-242 119-137 (190)
254 4gqr_A Pancreatic alpha-amylas 20.6 59 0.002 31.2 3.3 26 223-248 75-100 (496)
255 4ioe_A Secreted protein ESXB; 20.3 1.6E+02 0.0053 20.5 4.8 31 415-445 7-37 (93)
No 1
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=100.00 E-value=2e-82 Score=628.45 Aligned_cols=438 Identities=40% Similarity=0.796 Sum_probs=401.8
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
.||||+++.......|++|++|+|+||||.|||+||||.+++|++++||+||+|.+|+.++++++...+.+++.++++..
T Consensus 35 ~~h~~t~~~~~~~~~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~ 114 (473)
T 4e3q_A 35 SLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTV 114 (473)
T ss_dssp BCCSSCCHHHHHHHCCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCCTTEEEHHHH
T ss_pred cCCCCCChhhhccCCCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccccccccCHHHH
Confidence 49999999988888899999999999999999999999999999999999999999999999998766666666788999
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
+|+++|++.. +.+.++|+|++||+|||+.|||++|+|+..+|++++.+||.|+++|||++.++++.++.+ ++..+..+
T Consensus 115 ~lAe~L~~~~-p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~-~~~~~~~~ 192 (473)
T 4e3q_A 115 MLSEKLVEVS-PFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKP-YNSVFGLP 192 (473)
T ss_dssp HHHHHHHHHS-SCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCG-GGGGGTCS
T ss_pred HHHHHHHhhC-CCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccc-cccccCCC
Confidence 9999999996 446789999999999999999999999999999999999999999999999999999864 56667777
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
.+...++++|+.+++..+....+.+...+.+++++.+...+++++|+||+||+++++|+++|+++||++|+++|++||++
T Consensus 193 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gil 272 (473)
T 4e3q_A 193 LPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIP 272 (473)
T ss_dssp CTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCC
T ss_pred CCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceE
Confidence 78888999998888777778888888888899999998888889999999999999999999999999999999999999
Q ss_pred EEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHH
Q 013204 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320 (447)
Q Consensus 241 li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a 320 (447)
||+|||+|||||+|..|+++++|+.||++|++|+++||++|+|++++++++++.+.......+.+.|++||++||++|++
T Consensus 273 LI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aa 352 (473)
T 4e3q_A 273 VISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAI 352 (473)
T ss_dssp EEEECTTTSSSTTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHH
T ss_pred EeccCccccCCcccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhh
Confidence 99999999999999999999999999999999999999899999999999999886533233467899999999999999
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 321 AIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 321 a~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
++++|++++++++.+++++++++|++.|+++.+++.+.+++|.|+++++++..+..+..+++........+.+.|+++|+
T Consensus 353 ala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gl 432 (473)
T 4e3q_A 353 ALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGL 432 (473)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTE
T ss_pred hhhhhhhhccccHHHHHHHHHHHHHHHHHHHhcCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCc
Confidence 99999999999999999999999999999997778889999999999999988777777777666677889999999999
Q ss_pred eEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013204 401 LVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATEERV 440 (447)
Q Consensus 401 ~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 440 (447)
++.+.|+.+||+||+++|++|||+++++|+++++++..++
T Consensus 433 l~~~~g~~i~l~PPL~it~~eid~~~~~l~~al~~v~ael 472 (473)
T 4e3q_A 433 ICRPLGQSVVLCPPFILTEAQMDEMFDKLEKALDKVFAEV 472 (473)
T ss_dssp ECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999876654
No 2
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=100.00 E-value=2.6e-72 Score=554.21 Aligned_cols=401 Identities=26% Similarity=0.467 Sum_probs=343.8
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++++++|+||||.|||+||||.+++|++++||+||+|.+|+.++++++.+. .....+++...++++++++..+.
T Consensus 44 ~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~-~~~~~~~~~~~~lae~L~~~~p~ 122 (456)
T 4atq_A 44 SGVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHT-CFMVTPYEGYVAVTEQLNRLTPG 122 (456)
T ss_dssp CSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCC-TTTTSCCHHHHHHHHHHHHHSSC
T ss_pred CCCCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCc-ccCccCcHHHHHHHHHHHHhCCC
Confidence 45799999999999999999999999999999999999999999999999886432 23345788899999999999755
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcc-ccCCCCCCCCcceecCCCC
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPA-LHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 171 (447)
...++++|++||+|||+.|||+++.+ +++++||.|+++|||++.++++.++... ++..+....+.+.++|++.
T Consensus 123 ~~~~~v~f~~sGsEA~e~AlklAr~~------t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~ 196 (456)
T 4atq_A 123 DHAKRTVLFNSGAEAVENAVKVARLA------TGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSY 196 (456)
T ss_dssp SSCEEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCC
T ss_pred CCCcEEEEeCChHHHHHHHHHHHhhh------hcCCeEEEEecccCCccccccccccCccccccCCCCccccceeccccc
Confidence 56789999999999999999999988 5678999999999999999999887653 4555666667777888877
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
.++...+..+..+.....++.+++. .+++++++||+||+++++|.++|+++||++|+++|++||++||+||||||||
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~e~~---~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~G 273 (456)
T 4atq_A 197 PFREENPEITGAEAAKRAITMIEKQ---IGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFC 273 (456)
T ss_dssp GGGCSSTTCCHHHHHHHHHHHHHHH---TCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred ccccCCCcccHHHHHHHHHHHHHHh---hcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccC
Confidence 6665555555444444444444433 3457899999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
|+|+.|+++++|+.||++|+||+++|| +|+|++++++++++.+. ...|++||++||++|++++++|++++++
T Consensus 274 RtG~~~a~e~~gv~PDivt~gK~lggg-~P~~av~~~~~i~~~~~-------~~~~~~Tf~gnpla~aaala~L~~i~~~ 345 (456)
T 4atq_A 274 RTGEWFAVDHEGVVPDIITMAKGIAGG-LPLSAITGRADLLDAVH-------PGGLGGTYGGNPVACAAALAAIDTMEQH 345 (456)
T ss_dssp TTSSSSGGGGTTCCCSEEEECGGGGTT-SSCEEEEEEHHHHTTSC-------TTSSCCSSSSCHHHHHHHHHHHHHHHHT
T ss_pred CccccccccccCCCCchhhhhhcccCc-CCceeeEecHHHHhccc-------ccCCCCCCCCChHHHHhhHHHHHHHhhc
Confidence 999999999999999999999999988 79999999999998875 3468899999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhHhhc-cC-----CCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee
Q 013204 332 NIVEQVNKIAPKFQDGVKAF-SD-----SPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS 405 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l-~~-----~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~ 405 (447)
++.++++++++++++.|+++ .+ ++++.+++|.|+|+++++.++.. .. ........+.+.|+++|+++.++
T Consensus 346 ~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~-~~---~~~~~~~~v~~~~~~~Gvl~~~~ 421 (456)
T 4atq_A 346 DLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGS-KE---PNAELTKAVAAACLKEGVIILTC 421 (456)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTS-CC---BCHHHHHHHHHHHHHTTEECEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCC-CC---cCHHHHHHHHHHHHHCCCEEEec
Confidence 99999999999999999887 33 46789999999999999986532 11 12234667889999999998876
Q ss_pred C---CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 406 G---DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 406 g---~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
| +.|||.||+++|+++||+++++|+++++.
T Consensus 422 g~~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 422 GTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp CTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 4 67999999999999999999999999875
No 3
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=2e-69 Score=542.16 Aligned_cols=435 Identities=31% Similarity=0.588 Sum_probs=378.2
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+||||+++......+|+++++++|+++||.|||+||||++++|+++|||+||+|++|+.++++++.++++. .++++...
T Consensus 22 ~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~-~~~~~~~~ 100 (476)
T 3i5t_A 22 ILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPW-YMATSPAA 100 (476)
T ss_dssp BCCTTEEGGGTTTCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTT-TCBCHHHH
T ss_pred cccCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccC-ccCCHHHH
Confidence 59999999887777899999999999999999999999999999999999999999999999886554432 45788999
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++++++++.+ +.+.++++|++||+|||+.||++++.+...+|++++++||+++++|||++.++++.++.+.++..+...
T Consensus 101 ~la~~l~~~~-~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~ 179 (476)
T 3i5t_A 101 RLAEKIATLT-PGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIA 179 (476)
T ss_dssp HHHHHHHTTS-STTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCC
T ss_pred HHHHHHHhcC-CCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCC
Confidence 9999999987 346779999999999999999999999888888888999999999999999999999988888777777
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
.....++++|..++. ...+.+.+...++++|++++....++++++||+||+++++|.++++++||++|+++|++||++
T Consensus 180 ~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gil 257 (476)
T 3i5t_A 180 QDRISFLSSPNPRHA--GNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDIL 257 (476)
T ss_dssp CTTEEEECCCCGGGC--TTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCE
T ss_pred CCCcEEeCCCccccc--CCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 777778887766553 345566777777899999988666578999999999999999999999999999999999999
Q ss_pred EEEehhhcCCCccccccccc-cCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHH
Q 013204 241 FIADEVICAFGRLGTMFGCD-KYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCA 319 (447)
Q Consensus 241 li~DEv~~g~g~~g~~~~~~-~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 319 (447)
||+||||+||||+|..++++ ++++.||++++||++++|++|+|++++++++++.+.......+.+.+++||+++|++++
T Consensus 258 lI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~a 337 (476)
T 3i5t_A 258 YISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACA 337 (476)
T ss_dssp EEEECTTTTTTTTSSSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHH
T ss_pred EEEEecccCCccccCceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHH
Confidence 99999999999999988888 99999999999999999878999999999999988643222345678889999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 320 VAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 320 aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
+++++|+.++++++.++++++++++++.|+++..++.+..+++.|+++++++.....+..++.........+.+.|+++|
T Consensus 338 Aa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 417 (476)
T 3i5t_A 338 AALANIELMEREGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELG 417 (476)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHHHCC
Confidence 99999999888889999999999999999988777888999999999999987643333222211113556888999999
Q ss_pred ceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 400 MLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 400 i~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
|++.+.|+.+||+||+.+|+++|++++++|+++++++.++
T Consensus 418 v~v~~~g~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~~ 457 (476)
T 3i5t_A 418 LIVRPLGDLCVISPPLIISRAQIDEMVAIMRQAITEVSAA 457 (476)
T ss_dssp EECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887754
No 4
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=100.00 E-value=8.1e-70 Score=544.13 Aligned_cols=432 Identities=38% Similarity=0.730 Sum_probs=375.4
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+|+||+++......+|+++++++|+++||.|||+||||++++++++|||+||+|++|+.++++++...++...++++...
T Consensus 23 ~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~ 102 (472)
T 3hmu_A 23 HLHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAI 102 (472)
T ss_dssp EECTTEEHHHHHHHCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSSEECHHHH
T ss_pred ccCCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHH
Confidence 59999988766666899999999999999999999999999999999999999999999999886644444456788999
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
+|++++++.+ +.+.++|+|++||+|||+.|+++++.++..+|++++++||+++++|||++.++++.++.+.++..+. +
T Consensus 103 ~lae~l~~~~-~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~-~ 180 (472)
T 3hmu_A 103 ALAQKLAELA-PGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSG-L 180 (472)
T ss_dssp HHHHHHHHHS-CTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTC-C
T ss_pred HHHHHHHHhC-CCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccC-C
Confidence 9999999986 3467899999999999999999999988888888889999999999999999999999887777777 6
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
...+..+++|..++.... .+.+.+...++++|++++....++++++||+||+++++|.++++++||++|+++|++||++
T Consensus 181 ~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gil 259 (472)
T 3hmu_A 181 IPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDIL 259 (472)
T ss_dssp CSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCE
T ss_pred CCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 666777777664442222 4556677777899999987666678999999999999999999999999999999999999
Q ss_pred EEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHH
Q 013204 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320 (447)
Q Consensus 241 li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a 320 (447)
||+||||+||||+|..++++++++.||+++|||+|+||++|+|++++++++++.+.. +.+.+++||+++|+++++
T Consensus 260 lI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~-----~~~~~~~t~~~np~a~aA 334 (472)
T 3hmu_A 260 LIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGK-----DEFNHGYTYSGHPVAAAV 334 (472)
T ss_dssp EEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTT-----SCBCCCCTTTTCHHHHHH
T ss_pred EEEEccccCCcccCccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhccc-----CCccccCCCCCCHHHHHH
Confidence 999999999999999888899999999999999999988899999999999998832 356778899999999999
Q ss_pred HHHHHHHHhhhcHHHHHH-HHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCC-cchHHHHHHHHHHc
Q 013204 321 AIEALKIYKERNIVEQVN-KIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPE-WGIGAYFGAQCEKH 398 (447)
Q Consensus 321 a~a~l~~~~~~~~~~~~~-~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~ 398 (447)
++++|+.++++++.++++ ++++++++.|+++..++.+..+++.|+++++++..+..+..++... ......+.+.|+++
T Consensus 335 a~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 414 (472)
T 3hmu_A 335 ALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFAN 414 (472)
T ss_dssp HHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHHHC
Confidence 999999988888999999 9999999999888667888999999999999987543333333222 22356688999999
Q ss_pred CceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013204 399 GMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATEERV 440 (447)
Q Consensus 399 Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 440 (447)
||++.++|+.+||+||+.+|+++|++++++|+++++++.+++
T Consensus 415 Gv~v~~~g~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~~~~ 456 (472)
T 3hmu_A 415 NLIMRHVGDRMIISPPLVITPAEIDEMFVRIRKSLDEAQAEI 456 (472)
T ss_dssp TBCCEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999989999999999999999999999999999887655
No 5
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=100.00 E-value=1.8e-66 Score=519.69 Aligned_cols=436 Identities=38% Similarity=0.707 Sum_probs=362.8
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+||||+++......+|+++++++|++++|.||++||||++++++++|||+||+|++|+.++++++...++...++++...
T Consensus 18 ~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~ 97 (459)
T 4a6r_A 18 HLHPFTDTASLNQAGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVV 97 (459)
T ss_dssp ----------------CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHH
T ss_pred ccCCccccccccccCCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHH
Confidence 69999998877777899999999999999999999999999999999999999999999999886644444456888999
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++++++++.+ +.+.++|+|++||++|++.|+++++.++..+|++++++||+++++|||++.++++.++.+.++..+...
T Consensus 98 ~la~~l~~~~-~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 176 (459)
T 4a6r_A 98 ELSSLLAEVT-PAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLP 176 (459)
T ss_dssp HHHHHHHHHS-CTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCS
T ss_pred HHHHHHHHhC-CCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCC
Confidence 9999999986 456789999999999999999999998888888888999999999999999999999988877777766
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
......+++|..++.... .+.+.+...++++|++++....++++++|++||+++++|.+++++++|++|+++|++||++
T Consensus 177 ~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~l 255 (459)
T 4a6r_A 177 IPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVL 255 (459)
T ss_dssp CSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCE
T ss_pred CCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 666777777664442222 4556677777899999987666678999999999999999999999999999999999999
Q ss_pred EEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHH
Q 013204 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 320 (447)
Q Consensus 241 li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a 320 (447)
||+||||+||||+|..++++++++.||+++|||+|+||++|+|++++++++++.+... +.+.+++||+++|+++++
T Consensus 256 lI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~----~~~~~~~t~~~~~~~~aa 331 (459)
T 4a6r_A 256 LVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAG----GDFNHGFTYSGHPVCAAV 331 (459)
T ss_dssp EEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHH----CTTHHHHHHCSCHHHHHH
T ss_pred EEEeccccCCCcccccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcC----CCcccCCCCCCCHHHHHH
Confidence 9999999999999988888889999999999999999888999999999999988632 234566789999999999
Q ss_pred HHHHHHHHhhhcHHHHHH-HHHHHHHHhH-hhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc
Q 013204 321 AIEALKIYKERNIVEQVN-KIAPKFQDGV-KAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH 398 (447)
Q Consensus 321 a~a~l~~~~~~~~~~~~~-~~~~~l~~~L-~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (447)
++++|+.++++++.++++ ++++++++.| +.+..++.+..+++.|+++++++..+..+..++.........+.+.|+++
T Consensus 332 a~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 411 (459)
T 4a6r_A 332 AHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRN 411 (459)
T ss_dssp HHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHHC
Confidence 999999988888999999 9999999999 77777788899999999999998765444444444444466788999999
Q ss_pred CceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 013204 399 GMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATEERVKE 442 (447)
Q Consensus 399 Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~~ 442 (447)
||++.++|+.+||+||+.+|+++|++++++|+++++++.++...
T Consensus 412 Gv~v~~~g~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~~~~ 455 (459)
T 4a6r_A 412 NLIMRACGDHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQTLKA 455 (459)
T ss_dssp TEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEecCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998999999999999999999999999999988766543
No 6
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=100.00 E-value=3.8e-66 Score=517.52 Aligned_cols=437 Identities=40% Similarity=0.740 Sum_probs=376.9
Q ss_pred CCCCCCcCccC--CCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChH
Q 013204 1 MLAPFTAGWQS--TDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKP 78 (447)
Q Consensus 1 ~~~~~~~~~~~--~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~ 78 (447)
+||||+++... ..++|+++++++|++++|.||++||||++++++++|||+||+|++|+.++++++...++...++++.
T Consensus 17 ~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~ 96 (460)
T 3gju_A 17 FFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEA 96 (460)
T ss_dssp CCCTTSCHHHHHHTCSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCCHH
T ss_pred cccCccccccccccCCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHH
Confidence 69999987554 3456799999999999999999999999999999999999999999999998765444444567888
Q ss_pred HHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCC
Q 013204 79 SLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFD 158 (447)
Q Consensus 79 ~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 158 (447)
..++++++++.+ +.+.++++|++||+||++.|+++++.++..+|++++++||+++++|||++.++++.++.+.++..+.
T Consensus 97 ~~~la~~l~~~~-~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 175 (460)
T 3gju_A 97 SITLAKMIIDRA-PKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFD 175 (460)
T ss_dssp HHHHHHHHHHHS-CTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTT
T ss_pred HHHHHHHHHhhC-CCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccC
Confidence 999999999985 3467899999999999999999999988888888889999999999999999999999888887777
Q ss_pred CCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcC
Q 013204 159 LPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD 238 (447)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g 238 (447)
.....+..++.|..++.+..+.+.+.+...++++|++++...+++++++|++||+++++|.++++++||++|+++|++||
T Consensus 176 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~ 255 (460)
T 3gju_A 176 LPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYD 255 (460)
T ss_dssp CSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTT
T ss_pred CCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 77677778887766665544566677777788999999876655689999999999999999999999999999999999
Q ss_pred CEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHH
Q 013204 239 ILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSC 318 (447)
Q Consensus 239 ~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 318 (447)
++||+||||+||||+|..++++++++.||+++|||+|++|++|+|++++++++++.+.......+.+.+++|++++|+++
T Consensus 256 ~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~ 335 (460)
T 3gju_A 256 VLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICV 335 (460)
T ss_dssp CEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHH
T ss_pred CEEEEeccccCCCcccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHH
Confidence 99999999999999998888889999999999999999987899999999999998853111112556778999999999
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH
Q 013204 319 AVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK 397 (447)
Q Consensus 319 ~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 397 (447)
++++++|+.++++++.++++++.+++++.|.++ .+++.+..+++.|.++++++........++.........+.+.|++
T Consensus 336 aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 415 (460)
T 3gju_A 336 AAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAA 415 (460)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHHHHHHHHHHHH
Confidence 999999999888889999999999999999655 6778888999999999999876544444444333456678899999
Q ss_pred cCceEEeeC--CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 398 HGMLVRVSG--DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 398 ~Gi~~~~~g--~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+||++.+.+ +.+||+||+.+|+++|++++++|+++++++.+
T Consensus 416 ~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 458 (460)
T 3gju_A 416 SGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVKSVFA 458 (460)
T ss_dssp TTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999886 78999999999999999999999999987653
No 7
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=100.00 E-value=6.1e-66 Score=506.25 Aligned_cols=379 Identities=19% Similarity=0.293 Sum_probs=317.4
Q ss_pred CCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC
Q 013204 12 TDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT 91 (447)
Q Consensus 12 ~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (447)
-.++|+++++++|+||||.|||+||||++++|+++|||+||+|++|+.++++++... ..++....++++++++.++
T Consensus 66 ~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~~----~~~~~~~~~lae~l~~~~p 141 (454)
T 4ao9_A 66 YAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINL----TGHNLLEGRLARLICERFP 141 (454)
T ss_dssp CSSCCCEEEEEETTEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSCC----CSEESSHHHHHHHHHHHST
T ss_pred cCCCCccEEEeecCEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCCc----cCCcHHHHHHHHHHHHhCC
Confidence 356799999999999999999999999999999999999999999999999875332 2345667899999999974
Q ss_pred cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC
Q 013204 92 ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 92 ~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
+.++++|++||+|||+.|||+++.+ +++++||.|+++|||++......++...+. . .....++.
T Consensus 142 --~~~~v~f~~SGsEA~e~AiklAr~~------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~------~-~~~~~p~n- 205 (454)
T 4ao9_A 142 --QIEQLRFTNSGTEANLMALTAALHF------TGRRKIVVFSGGYHGGVLGFGARPSPTTVP------F-DFLVLPYN- 205 (454)
T ss_dssp --TCSEEEEESSHHHHHHHHHHHHHHH------HTCCEEEEETTCBCSTTCBBSSSBCTTSCC------S-EEEEECTT-
T ss_pred --CCCEEEEeCchHHHHHHHHHHHHhc------ccCCeEEEEeCCcCCccccccccccCccCC------C-CcccCCCc-
Confidence 5789999999999999999999988 467899999999999987665544322111 0 11122221
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
+++.+++.+.+.. +++++||+||+++++|+++|+++||++|+++|++||++||+|||+| |
T Consensus 206 -----------------d~~~l~~~l~~~~-~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t--G 265 (454)
T 4ao9_A 206 -----------------DAQTARAQIERHG-PEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT--S 265 (454)
T ss_dssp -----------------CHHHHHHHHHHTG-GGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG--G
T ss_pred -----------------hHHHHHHHHhhcC-CceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc--C
Confidence 1477888887644 4799999999999999999999999999999999999999999999 4
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
|+|..|+++++|++||++|++|+++|| +|+|++++++++++.+.. ..+.+.|++||++||++|++++++|++++++
T Consensus 266 R~G~~~a~e~~gv~PDi~t~gK~lggG-~Piga~~~~~ei~~~~~~---~~~~~~h~~T~~gnPla~AAala~L~~l~~~ 341 (454)
T 4ao9_A 266 RLAPHGLANKLGIRSDLTTLGKYIGGG-MSFGAFGGRADVMALFDP---RTGPLAHSGTFNNNVMTMAAGYAGLTKLFTP 341 (454)
T ss_dssp GGSTTCHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHGGGCT---TTCSCCCCCTTTTCHHHHHHHHHHHHHTSCH
T ss_pred CCccccchhccCCCCcEEEeccccCCC-CcceeeeeHHHHHHHHhh---ccCCccccCCCCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999 699999999999998853 2346678899999999999999999999989
Q ss_pred cHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCC--CCCCCcchHHHHHHHHHHcCceEEeeCCE
Q 013204 332 NIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNE--PFPPEWGIGAYFGAQCEKHGMLVRVSGDN 408 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gi~~~~~g~~ 408 (447)
++.+++++++++|++.|+++ .+++++.++++.|++++++|.+.+.... ....+......+...|+++||++.|.+
T Consensus 342 ~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~-- 419 (454)
T 4ao9_A 342 EAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRG-- 419 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTC--
T ss_pred ChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCC--
Confidence 99999999999999999998 6778889999999999999875432211 111223345567888999999988765
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
++.+++.+|++|||+++++|++++.++.
T Consensus 420 -~~~~s~~~T~~dId~~l~al~~~l~~~~ 447 (454)
T 4ao9_A 420 -FVVLSLPLTDADIDRYVAAIGSFIGGHG 447 (454)
T ss_dssp -EEECCTTCCHHHHHHHHHHHHHHHHHSG
T ss_pred -CEEEeCCCCHHHHHHHHHHHHHHHHhcc
Confidence 3456677999999999999999998753
No 8
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=100.00 E-value=2.4e-66 Score=545.38 Aligned_cols=431 Identities=21% Similarity=0.296 Sum_probs=343.4
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCc--EEEeCCCC----EEEecCCccccccCCCC-CHHHHHHHHHHHhcCCcccccCc
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGS--YVYDVNGK----KYLDSLAGLWCTALGGS-EPRLVAAATAQLNTLPFYHSFWN 73 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~--~~~d~dg~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~~~~ 73 (447)
+||||+++.......|++|++++|. ++||.||| +|||++|++|++++||+ ||+|.+|+.++++++.+. .+.+
T Consensus 342 ~whp~t~~~~~~~~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~-~~~~ 420 (831)
T 4a0g_A 342 FWWPFTQHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHV-MFPE 420 (831)
T ss_dssp BCCTTCCGGGCCGGGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSC-CCTT
T ss_pred ccCCccCcccccCCCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhcccc-cccc
Confidence 6999999987766789999999995 99999999 99999999999999999 999999999999886543 2234
Q ss_pred CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHH-HHHHHhcCCC--------CcceEEEEcCCCccchhhh
Q 013204 74 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV-WYYNNALGRP--------NKKKFIARQKSYHGSTLIA 144 (447)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~-~~~~~~~~~~--------~~~~vi~~~~~yhg~~~~~ 144 (447)
..+++..+|+++|++..+....++|+|++||+||||.|||++ ++|+..+|.+ ++.+||.++++|||.+.++
T Consensus 421 ~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~ga 500 (831)
T 4a0g_A 421 NVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGA 500 (831)
T ss_dssp EECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceee
Confidence 578999999999999974333789999999999999999999 6777766642 5789999999999999999
Q ss_pred hcccCCccccCCC--------C----CCC----CcceecCCCCcccCCCCCC----C----------hhHHHHHHHHHHH
Q 013204 145 ASLSGLPALHQKF--------D----LPA----PFVLHTDCPHYWRYAHPGE----T----------EEEYSTRLANNLE 194 (447)
Q Consensus 145 ~~~~~~~~~~~~~--------~----~~~----~~~~~~~~~~~~~~~~~~~----~----------~~~~~~~~~~~le 194 (447)
+++++...++..+ . .+. ..+.++++|+.++.....+ + .+.....++++|+
T Consensus 501 ls~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 580 (831)
T 4a0g_A 501 MEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLS 580 (831)
T ss_dssp HHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHH
T ss_pred eeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHH
Confidence 9999876655411 0 110 1223455555443221111 1 1123345567788
Q ss_pred HHHHh----hCCCcEEEEEEccc-cCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee
Q 013204 195 DLILK----EGPETIAAFIAEPV-IGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV 269 (447)
Q Consensus 195 ~~l~~----~~~~~~a~vi~epv-~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v 269 (447)
+.+.. .+++++++||+||+ +++||+++++++||++|+++|++||++||+|||++||||+|+.|+++++|+.||++
T Consensus 581 ~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDii 660 (831)
T 4a0g_A 581 KHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIA 660 (831)
T ss_dssp HHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEE
T ss_pred HHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEE
Confidence 87753 34578999999997 99999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH---
Q 013204 270 SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQD--- 346 (447)
Q Consensus 270 ~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~--- 346 (447)
|+||+|+||++|+|++++++++++.+.... +.+.+.|++||++||++|++++++|++++++++.+++.++++++++
T Consensus 661 tlsK~L~gG~~Plgav~~~~~i~~~~~~~~-~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~ 739 (831)
T 4a0g_A 661 CFAKLLTGGMVPLAVTLATDAVFDSFSGDS-KLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWD 739 (831)
T ss_dssp EECGGGGTTSSCCEEEEECHHHHHTTCSSC-GGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSC
T ss_pred EEecccccCccCcEEEEECHHHHHHHhccc-ccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999999999889999999999999886421 2345678999999999999999999999887777777666665543
Q ss_pred -hH-hhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeCCEEEEecCCCCCHHHHHH
Q 013204 347 -GV-KAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDE 424 (447)
Q Consensus 347 -~L-~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~ 424 (447)
.+ +.+.+++.+.++++.|+++++++..+... ..+ ....+..+.+.|+++||++.+.++.|||+||+.+|+++|++
T Consensus 740 ~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~-~~~--~~~~a~~~~~~l~e~Gv~v~p~g~~lrl~pp~~~t~e~id~ 816 (831)
T 4a0g_A 740 EELVQQISSHSAVQRVVVIGTLFALELKADASN-SGY--ASLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCTSPEICRR 816 (831)
T ss_dssp HHHHHHHHHSTTEEEEEEETTEEEEEEC------------CHHHHHHHHHHHHTTEECCCBTTEEEEECCTTCCHHHHHH
T ss_pred HHHHHHHhhCCCceeEeecccEEEEEEecCccc-ccc--chHHHHHHHHHHHHCCcEEEecCCEEEEECCCCCCHHHHHH
Confidence 22 33345688999999999999999754211 111 11235568889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 013204 425 LISKYGKALKAT 436 (447)
Q Consensus 425 ~~~~l~~~l~~~ 436 (447)
++++|+++++++
T Consensus 817 ~~~~l~~~l~~l 828 (831)
T 4a0g_A 817 LLTKLYKRLGEF 828 (831)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 9
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=100.00 E-value=1.9e-63 Score=496.50 Aligned_cols=431 Identities=31% Similarity=0.578 Sum_probs=343.2
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+||||+++... ...|+++++++|++++|.||++||||++++++++|||+||+|.+|+.++++++..++ ...++++...
T Consensus 13 ~~~~~~~~~~~-~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~-~~~~~~~~~~ 90 (448)
T 3dod_A 13 LWLPFTQMKDY-DENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHST-LLGMTNVPAT 90 (448)
T ss_dssp BCCTTCCHHHH-HHSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCC-CSSSEEHHHH
T ss_pred ccccccccccc-cCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcc-ccccCCHHHH
Confidence 69999876544 447899999999999999999999999999999999999999999999998764432 2345678889
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++++++++.+ +.+.++++|++||++|++.|+++++.++..+|.+++++||+++++|||++..++..++.+.++..+...
T Consensus 91 ~la~~l~~~~-~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 169 (448)
T 3dod_A 91 QLAETLIDIS-PKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPL 169 (448)
T ss_dssp HHHHHHHHHS-CTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC--------------------------
T ss_pred HHHHHHHHhC-CCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCC
Confidence 9999999986 346689999999999999999999987666676668999999999999999999988877766666655
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEcccc-CCCCCccCChhHHHHHHHHHHhcCC
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKYDI 239 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~-~~~G~~~~~~~~l~~l~~l~~~~g~ 239 (447)
......++.++.++.+ +.+.+.+.++++++|++++... ++++++|++||++ +++|.++++++||++|+++|++||+
T Consensus 170 ~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~le~~l~~~-~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~ 246 (448)
T 3dod_A 170 MFESYKAPIPYVYRSE--SGDPDECRDQCLRELAQLLEEH-HEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDV 246 (448)
T ss_dssp ---CEEECCCCCTTSS--SCCHHHHHHHHHHHHHHHHHHH-GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTC
T ss_pred CCCceEeCCCccccCC--ccchhhhhHHHHHHHHHHHHhC-CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCC
Confidence 5566777877766655 5566778888999999998732 3578999999998 9999999999999999999999999
Q ss_pred EEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHH
Q 013204 240 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCA 319 (447)
Q Consensus 240 ~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 319 (447)
+||+||||+|||++|..++++++++.||+++|||++++|++|+|++++++++++.+.......+.+.+++|++++|++++
T Consensus 247 ~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a 326 (448)
T 3dod_A 247 LMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCA 326 (448)
T ss_dssp EEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHH
T ss_pred EEEEeccccCCCcccchhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHH
Confidence 99999999999999998888999999999999999998745999999999999988631111223567789999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 320 VAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 320 aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
+++++|+.++++++.++++++++++++.|+++..++.+..+++.|.++++.+........++.........+.+.|+++|
T Consensus 327 aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 406 (448)
T 3dod_A 327 VALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELG 406 (448)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCC
Confidence 99999998888889999999999999999887667888889999999999987654333333332223466889999999
Q ss_pred ceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 400 MLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 400 i~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
|++.+.++.+|++|++.+|+++|++++++|+++++++.
T Consensus 407 v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 444 (448)
T 3dod_A 407 MLTRPLGDVIAFLPPLASTAEELSEMVAIMKQAIHEVT 444 (448)
T ss_dssp EECCEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cEEeccCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999989999999999999999999999999998764
No 10
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=100.00 E-value=2e-62 Score=489.01 Aligned_cols=409 Identities=24% Similarity=0.460 Sum_probs=343.5
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeC-CCC--EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCCh
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDV-NGK--KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTK 77 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~-dg~--~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~ 77 (447)
+||||+++... ...|+++++++|+++||. ||| +||||++++|+++|||+||+|++|+.+++++....+ +..++++
T Consensus 41 ~~~~~~~~~~~-~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~-~~~~~~~ 118 (457)
T 3tfu_A 41 LWHPYSSIGRE-AVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVM-FGGLTHE 118 (457)
T ss_dssp BCCTTCCSSCC-SSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCC-SSSEECH
T ss_pred cCccccccccc-CCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCcc-ccccCCH
Confidence 69999987322 457899999999999999 999 999999999999999999999999999998764332 2234778
Q ss_pred HHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccC-CccccCC
Q 013204 78 PSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSG-LPALHQK 156 (447)
Q Consensus 78 ~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~-~~~~~~~ 156 (447)
...++++++++.+ +.+.++++|++||+||++.|+++++.++..+|.+++++||+++++|||++.++++.++ .+.++..
T Consensus 119 ~~~~L~e~la~~~-~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 197 (457)
T 3tfu_A 119 PAARLAKLLVDIT-PAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL 197 (457)
T ss_dssp HHHHHHHHHHHHS-STTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC------
T ss_pred HHHHHHHHHHHhC-CCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCccccccc
Confidence 8999999999997 3467799999999999999999999888877877888999999999999999998854 3444444
Q ss_pred CCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEcc-ccCCCCCccCChhHHHHHHHHHH
Q 013204 157 FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEP-VIGAGGVIPPPATYFEKVQAVVK 235 (447)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~ep-v~~~~G~~~~~~~~l~~l~~l~~ 235 (447)
+.........++.|.. .+..+++++|++.+... ++++++|++|| +++++|.+++++++|++|+++|+
T Consensus 198 ~~~~~~~~~~~~~p~~-----------~~~~~d~~~le~~l~~~-~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~ 265 (457)
T 3tfu_A 198 WTDVLAAQVFAPQVPR-----------DYDPAYSAAFEAQLAQH-AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICR 265 (457)
T ss_dssp ----CCCCEEECCCCS-----------SCCHHHHHHHHHHHHHH-GGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHH
T ss_pred ccCCCCCceEecCCCc-----------ccCHHHHHHHHHHHHhC-CCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHH
Confidence 4433334444444321 12334578888888754 35789999999 99999999999999999999999
Q ss_pred hcCCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcH
Q 013204 236 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHP 315 (447)
Q Consensus 236 ~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 315 (447)
+||++||+||||+|||++|..++++++++.||+++|||+|+||++|+|++++++++++.+... ..+.+.+++||++||
T Consensus 266 ~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~--~~~~~~~~~t~~~n~ 343 (457)
T 3tfu_A 266 RYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAG--AAGALMHGPTFMANP 343 (457)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHS--SSCSCCCCCTTTTCH
T ss_pred HcCCEEEEEcCccCCccccchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhcc--CCCceeEecCCCcCH
Confidence 999999999999999999998888999999999999999999978999999999999988531 123557888999999
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHH
Q 013204 316 VSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC 395 (447)
Q Consensus 316 ~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (447)
+++++++++|+.++++++.++++++++++++.|+++..++.+..+++.|+++++++.+.. ....+.+.|
T Consensus 344 ~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~l~~~~-----------~~~~~~~~l 412 (457)
T 3tfu_A 344 LACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPV-----------DLAVATPAA 412 (457)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEECSSCEEEEESSCC-----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecCCeEEEEEECCcc-----------cHHHHHHHH
Confidence 999999999999888889999999999999999988666778889999999999886532 145688999
Q ss_pred HHcCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 396 EKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 396 ~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+++||++.+.++.+|++||+.+|+++|++++++|+++++++.
T Consensus 413 ~~~Gv~v~~~~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 413 LDRGVWLRPFRNLVYAMPPYICTPAEITQITSAMVEVARLVG 454 (457)
T ss_dssp HHTTEECCCBTTEEEECCCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred HHCCeEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998754
No 11
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=100.00 E-value=4.6e-60 Score=472.78 Aligned_cols=413 Identities=33% Similarity=0.633 Sum_probs=346.3
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++++++|++++|.||++||||++++++++|||+||+|++|+.++++++.+ ....++++...++++++++.++ .
T Consensus 30 ~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~--~~~~~~~~~~~~la~~l~~~~~-~ 106 (452)
T 3n5m_A 30 NSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY--FPMSQSHEPAIKLAEKLNEWLG-G 106 (452)
T ss_dssp GGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC--CCTTSEEHHHHHHHHHHHHHHT-S
T ss_pred CCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC--cccccCCHHHHHHHHHHHHhCC-C
Confidence 578999999999999999999999999999999999999999999999987644 2224577889999999999874 3
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
+.+ ++|++||+||++.|+++++.++..+|++++++||+++++|||++.+++..++.+.++..+.........++.++.+
T Consensus 107 ~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (452)
T 3n5m_A 107 EYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCY 185 (452)
T ss_dssp CEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTT
T ss_pred Cce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccc
Confidence 444 9999999999999999999886666666789999999999999999999998887776666555566677776655
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccc-cCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPV-IGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv-~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
+.+.. .+.+.+...++++|++.+...+++++++|++||+ ++ +|.++|++++|++|+++|++||++||+||||+|||+
T Consensus 186 ~~~~~-~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~ 263 (452)
T 3n5m_A 186 RMPGI-ERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGR 263 (452)
T ss_dssp TSTTT-TTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred cCccC-CchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCc
Confidence 54322 1223344455788998887444567999999999 89 999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN 332 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~ 332 (447)
+|..++++++++.||+++|||++++|++|+|++++++++++.+... ...+.+.+++|++++|+++++++++|+.+++++
T Consensus 264 ~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~-~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 342 (452)
T 3n5m_A 264 TGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGK-GEYEFFRHINTFGGNPAACALALKNLEIIENEN 342 (452)
T ss_dssp TSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSS-STTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTT
T ss_pred ccccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhc-cCCCCccccCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 9998889999999999999999999768999999999999988531 012356678899999999999999999988888
Q ss_pred HHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----
Q 013204 333 IVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG----- 406 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g----- 406 (447)
+.++++++++++++.|+++ ..++.+..+++.|.++++++.....+..+++ ......+.+.|+++||++.+.+
T Consensus 343 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~--~~~~~~~~~~l~~~Gv~~~~~~~~~~~ 420 (452)
T 3n5m_A 343 LIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPID--NDKIASVVNACKEKGLIIGRNGMTTAG 420 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECC--HHHHHHHHHHHHHTTEECEECTTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCC--HHHHHHHHHHHHHCCcEEeecCcccCC
Confidence 9999999999999999887 6778888999999999998865433222221 1123468888999999999875
Q ss_pred --CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 407 --DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 --~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+||+|++.+|+++|++++++|++++++
T Consensus 421 ~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 421 YNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999998753
No 12
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=100.00 E-value=3.2e-59 Score=465.92 Aligned_cols=404 Identities=25% Similarity=0.439 Sum_probs=334.7
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++++++|+++||.||++||||++++++++|||+||+|++|+.++++++..+ +...++++...++++++++.++.
T Consensus 41 ~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~~~ 119 (451)
T 3oks_A 41 TTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHT-CFMVTPYEGYVAVCEQLNRLTPV 119 (451)
T ss_dssp CSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCC-TTTTSCCHHHHHHHHHHHHHSSC
T ss_pred CCCCceEEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccc-cCCccCCHHHHHHHHHHHHhCCc
Confidence 36899999999999999999999999999999999999999999999999876432 22345788899999999999753
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc-cccCCCCCCCCcceecCCCC
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 171 (447)
...++++|++||+||++.|+++++.+ +++++||+++++|||++.+++..++.+ .++..+......+..++++.
T Consensus 120 ~~~~~v~~~~sGseA~~~Alk~a~~~------~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (451)
T 3oks_A 120 RGDKRSALFNSGSEAVENAVKIARSH------THKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSY 193 (451)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHh------cCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCc
Confidence 34679999999999999999999876 457899999999999999999988864 66666665556666777764
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHh-hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILK-EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~-~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
.++.+.++.+.+.+...+++.+++.+.+ ..++++++|++||+++++|.++++++|+++|+++|++||++||+||||+||
T Consensus 194 ~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~ 273 (451)
T 3oks_A 194 PFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGF 273 (451)
T ss_dssp HHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred cccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 3332111122122233345555555543 234689999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
|++|..++++++++.||+++|||++++| +|+|++++++++++.+. ...+.+|++++|+++++++++|+.+++
T Consensus 274 g~~g~~~~~~~~~~~pdi~t~sK~l~~G-~~iG~v~~~~~~~~~~~-------~~~~~~t~~~~~~~~aaa~aal~~~~~ 345 (451)
T 3oks_A 274 ARTGAMFACEHEGIDPDLIVTAKGIAGG-LPLSAVTGRAEIMDSPH-------VSGLGGTYGGNPIACAAALATIETIES 345 (451)
T ss_dssp TTTSSSSGGGGGTCCCSEEEECGGGGTT-SSCEEEEEEHHHHTCSC-------TTSBCCSSSSCHHHHHHHHHHHHHHHH
T ss_pred CccccchhhhhcCCCCCeeeehhhhhCC-cceEEEEECHHHHhhhc-------CCCcCCCCCCCHHHHHHHHHHHHHHhh
Confidence 9999988899999999999999999997 89999999999988775 335778999999999999999998888
Q ss_pred hcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---
Q 013204 331 RNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--- 406 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--- 406 (447)
+++.++++++++++++.|+++ ..++.+..+++.|.++++.+.... ...+ .......+.+.|+++||++.+++
T Consensus 346 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~---~~~~~~~~~~~l~~~Gv~v~~~~~~~ 421 (451)
T 3oks_A 346 EGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAG-TTEP---DADLTKALCAGAHAAGVIVLSCGTYG 421 (451)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTT-SCCB---CHHHHHHHHHHHHHTTEECEEECTTS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCc-cCCC---CHHHHHHHHHHHHhCCcEEecCCCCC
Confidence 889999999999999999887 567888899999999999886411 1110 11235568899999999999875
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+||+|++.+|+++|++++++|++++++
T Consensus 422 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 422 NVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 67999999999999999999999998863
No 13
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=5.9e-59 Score=464.06 Aligned_cols=402 Identities=27% Similarity=0.463 Sum_probs=334.6
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++++++|+++||.||++||||++++++++|||+||+|++|+.++++++..+ +...++++...++++++++.++.
T Consensus 44 ~~~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~~~ 122 (453)
T 4ffc_A 44 STAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHT-CFMVTPYEQYVQVAELLNALTPG 122 (453)
T ss_dssp CSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCC-TTTTSCCHHHHHHHHHHHHHSSC
T ss_pred CCCCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhcccc-ccCcCCCHHHHHHHHHHHHhCCC
Confidence 36899999999999999999999999999999999999999999999999876432 22245788899999999999743
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc-cccCCCCCCCCcceecCCCC
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 171 (447)
...++++|++||+||++.|+++++.+ +++++||+++++|||++.+++..++.+ .++..+......+..++++.
T Consensus 123 ~~~~~v~~~~sGseA~~~alk~a~~~------~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (453)
T 4ffc_A 123 DHDKRTALFNSGAEAVENAIKVARLA------TGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASY 196 (453)
T ss_dssp SSCEEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHHHh------cCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCc
Confidence 34679999999999999999999876 457899999999999999999988865 66666665555666777765
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
.++.+. +.+.+.....+++.|++.+ .++++++||+||+++++|.++++++||++|+++|++||++||+||||+|||
T Consensus 197 ~~~~~~-g~~~~~~~~~~~~~l~~~i---~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g 272 (453)
T 4ffc_A 197 PLRDEP-GLTGEEAARRAISRIETQI---GAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFA 272 (453)
T ss_dssp TTTSCT-TCCHHHHHHHHHHHHHHHT---CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred cccCcc-ccchHHHHHHHHHHHHHhc---CCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCC
Confidence 443221 2222222233345555443 346799999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
++|..++++++++.||+++|||++++| +|+|++++++++++.+. ...+.+|++++|+++++++++|+.++++
T Consensus 273 ~~g~~~a~~~~~~~pdi~t~sK~~~~G-~~~G~~~~~~~i~~~~~-------~~~~~~t~~~~~~~~aaa~aal~~~~~~ 344 (453)
T 4ffc_A 273 RTGAWFASEHEGIVPDIVTMAKGIAGG-MPLSAVTGRAELMDAVY-------AGGLGGTYGGNPVTCAAAVAALGVMREL 344 (453)
T ss_dssp TTSSSSTHHHHTCCCSEEEECGGGGTT-SSCEEEEEEHHHHTTSC-------TTSSCCSSSSCHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhcCCCcchHhhhhhhcCC-cCeEEEEECHHHHhhhc-------ccCcCCCCCcCHHHHHHHHHHHHHhhhh
Confidence 999888889999999999999999997 89999999999988875 3356789999999999999999988888
Q ss_pred cHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---C
Q 013204 332 NIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---D 407 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~ 407 (447)
++.++++++++++++.|+++ ..++.+..+++.|.++++++.... ... ........+.+.|+++||++.+++ +
T Consensus 345 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~---~~~~~~~~~~~~l~~~Gv~v~~~~~~~~ 420 (453)
T 4ffc_A 345 DLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPG-TLE---PDAALTKSIAAEALSQGVLILTCGTFGN 420 (453)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBCTT-SCC---BCHHHHHHHHHHHHHTTEECCEECTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEecCc-ccC---CCHHHHHHHHHHHHhCCCEEecCCCCCC
Confidence 89999999999999999887 567888889999999999886411 111 011235668889999999998875 6
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 408 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
.+||+|++.+|+++|++++++|+++++++.
T Consensus 421 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 421 VIRLLPPLVIGDDLLDEGITALSDIIRAKA 450 (453)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999998754
No 14
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=100.00 E-value=4.5e-57 Score=448.35 Aligned_cols=412 Identities=31% Similarity=0.548 Sum_probs=321.4
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+|+|| ..+|+++.+++|++++|.||++||||+++++.++|||+||+|++++.+++++...++. ..++++...
T Consensus 4 ~~~~~-------~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~ 75 (430)
T 3i4j_A 4 VFYRS-------SKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHG-SQFSSDVLE 75 (430)
T ss_dssp BCCSS-------SSCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCT-TTCEEHHHH
T ss_pred cccCC-------CCCCceEEeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccc-cccCCHHHH
Confidence 58888 3578999999999999999999999999999999999999999999999987654332 245678889
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++++++++.+ +.+.++++|++||+||++.|+++++.+...+|+++++.||+++++|||++..++..++.+.+...+...
T Consensus 76 ~l~~~la~~~-~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 154 (430)
T 3i4j_A 76 EYAGRLARFV-GLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPL 154 (430)
T ss_dssp HHHHHHHHHT-TCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC------------------------
T ss_pred HHHHHHHHhC-CCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCc
Confidence 9999999986 346789999999999999999999888777787778999999999999998888877765555444333
Q ss_pred CC--cceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccC-CCCCccCChhHHHHHHHHHHhc
Q 013204 161 AP--FVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIG-AGGVIPPPATYFEKVQAVVKKY 237 (447)
Q Consensus 161 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~-~~G~~~~~~~~l~~l~~l~~~~ 237 (447)
.. .+..+++++.++. ...++++|++.+...+++++++|++||+++ ++|.++++++++++|+++|++|
T Consensus 155 ~~~~~~~~~~~~~~~~~----------~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~ 224 (430)
T 3i4j_A 155 MRPEAWPKLPKPDPARN----------GAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEA 224 (430)
T ss_dssp -CGGGSCEECCCCTTSC----------HHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHH
T ss_pred CCCCCceEcCCCcccch----------hhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHc
Confidence 33 3445555443221 344568888888765556789999999999 9999999999999999999999
Q ss_pred CCEEEEehhhcCCCccccccccccC-CCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHH
Q 013204 238 DILFIADEVICAFGRLGTMFGCDKY-SIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPV 316 (447)
Q Consensus 238 g~~li~DEv~~g~g~~g~~~~~~~~-~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 316 (447)
|++||+||+|+|||++|..++++.+ ++.||+++|||++++|++|+|++++++++++.+.... +.+.+.+|++.+++
T Consensus 225 ~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~---~~~~~~~t~~~~~~ 301 (430)
T 3i4j_A 225 GIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGS---GAFMHGFTYAGHPV 301 (430)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTT---CBCCCCCTTTTCHH
T ss_pred CCEEEEechhhCCCcccchhhhhhhcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccC---CcccccCCCCCCHH
Confidence 9999999999999999988888888 9999999999999987689999999999999887421 23567789999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHH
Q 013204 317 SCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC 395 (447)
Q Consensus 317 ~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (447)
++++++++|+.++++++.++++++.+++++.|+++ ..++.+..+++.|.++.+.+.+.. ...++.. ......+.+.|
T Consensus 302 ~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~l 379 (430)
T 3i4j_A 302 SVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLA-TGQAFET-PGIASRIGAAA 379 (430)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC--------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEecccc-ccCCCcc-HHHHHHHHHHH
Confidence 99999999998887889999999999999999887 467778889999999999886321 1111100 01145688899
Q ss_pred HHcCceEEee--------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 396 EKHGMLVRVS--------GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 396 ~~~Gi~~~~~--------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+++||++.++ ++.+||+|++.+|+++|++++++|+++++++
T Consensus 380 ~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 380 LKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp HHTTEECC-----------CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999876 4679999999999999999999999998764
No 15
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=100.00 E-value=3.8e-56 Score=444.17 Aligned_cols=427 Identities=32% Similarity=0.533 Sum_probs=342.5
Q ss_pred CCCCCCcCccCCCCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHH
Q 013204 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (447)
+|+||+++.... ..|+++.+++|+++||.||++|+|+++++|++++||+||+|++|+.+++++.. .+.+..++.+...
T Consensus 19 ~~~~~~~~~~~~-~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~ 96 (449)
T 3a8u_X 19 HWMPYTANRNFL-RDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD-YSPGFQYGHPLSF 96 (449)
T ss_dssp SCCTTSCHHHHH-HSCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS-CCCSSSCCCHHHH
T ss_pred cccccccccccc-CCCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC-CccccccCCHHHH
Confidence 599999885432 36899999999999999999999999999999999999999999999998754 2222145777889
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP 160 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (447)
++++++++++ +.+.++++|++||++|++.|+++++.++..+|++++++||+++++|||++..++..++.+.++..+...
T Consensus 97 ~l~~~la~~~-~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~ 175 (449)
T 3a8u_X 97 QLAEKITDLT-PGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQP 175 (449)
T ss_dssp HHHHHHHTTS-STTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCC
T ss_pred HHHHHHHHhC-CCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCC
Confidence 9999999886 346789999999999999999998877766676677899999999999988777777765555555544
Q ss_pred CCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCE
Q 013204 161 APFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240 (447)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~ 240 (447)
...+..+++|..++....+.+.+.+...++++|++.+....++++++|++||+++++|.++++++++++|+++|++||++
T Consensus 176 ~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~ 255 (449)
T 3a8u_X 176 MQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNIL 255 (449)
T ss_dssp SCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCE
T ss_pred CCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCE
Confidence 44455565554332211111223344555788998887544357899999999998998999999999999999999999
Q ss_pred EEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccC--CCCccCcCCCCCCcHHHH
Q 013204 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN--TLGSFSHGFTYSGHPVSC 318 (447)
Q Consensus 241 li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~t~~~~~~~~ 318 (447)
||+||+|+|||++|..+.++.+++.||++++||++++|++|+|++++++++++.+..... ....+.+.+|++++++++
T Consensus 256 li~Dev~~~~g~~g~~~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~ 335 (449)
T 3a8u_X 256 LVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVAC 335 (449)
T ss_dssp EEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHH
T ss_pred EEEeccccCccccCcchhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHH
Confidence 999999999999987777788888999999999999876899999999999988864211 112234567899999999
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc
Q 013204 319 AVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH 398 (447)
Q Consensus 319 ~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (447)
+++.++|+.++++++.++++++++++++.|+++..++.+..+++.|.++.+++........ .....+.+.|+++
T Consensus 336 aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~------~~~~~~~~~l~~~ 409 (449)
T 3a8u_X 336 AAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAI------VRPFEAGMALWKA 409 (449)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSS------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCccccc------ccHHHHHHHHHHC
Confidence 9999999988877889999999999999998875567777778889999998864321100 0122478888899
Q ss_pred CceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 399 GMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 399 Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
||++.++++.+|++|++.+|+++|++++++|+++++++
T Consensus 410 Gv~v~~~g~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 410 GFYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp TEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CcEEecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 99999988889999999999999999999999988653
No 16
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=100.00 E-value=3.6e-54 Score=427.25 Aligned_cols=383 Identities=30% Similarity=0.485 Sum_probs=300.4
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++.+++|+++||.||++||||++++++++|||+||+|.+|+.+++++....+. ..+.+...++++++++++
T Consensus 46 ~~~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~--- 120 (433)
T 1z7d_A 46 PIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSR--AFFSVPLGICERYLTNLL--- 120 (433)
T ss_dssp CEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCT--TSEEHHHHHHHHHHHHHH---
T ss_pred CCCceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccC--CcCCHHHHHHHHHHHhhc---
Confidence 358889999999999999999999999999999999999999999999987543322 236678899999999987
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHH-hcC-CCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNN-ALG-RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~-~~~-~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
+.++++|++||++|++.|+++++.+.. .+| .+++++||+++++|||++..++..++.+.++..+.+....+..+++.
T Consensus 121 g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~- 199 (433)
T 1z7d_A 121 GYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD- 199 (433)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTT-
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCC-
Confidence 467999999999999999999875432 122 23458999999999999887777666544443333222223333332
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
++++|++.+. .+++++|++||+++++|.++++++++++|+++|++||++||+||+|+|||
T Consensus 200 -----------------d~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 259 (433)
T 1z7d_A 200 -----------------DLEALEEELK---DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLG 259 (433)
T ss_dssp -----------------CHHHHHHHHT---STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred -----------------CHHHHHHHhC---CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCC
Confidence 1477888774 24689999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
++|..++++.+++.||++++||++++|++|+|++++++++++.+.. ..+.+||+++|+++++++++|+.++++
T Consensus 260 ~~g~~~~~~~~~~~~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~-------~~~~~t~~~~~~~~aaa~aal~~~~~~ 332 (433)
T 1z7d_A 260 RTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKP-------GEHGSTYGGNPLAASICVEALNVLINE 332 (433)
T ss_dssp TTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCT-------TCCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred cCCcchhhHhcCCCCCEEEECccccCCCCCeEEEEECHHHHhhhcc-------ccccccCCCCHHHHHHHHHHHHHHHhc
Confidence 9998888888899999999999999775799999999999887742 246678999999999999999988877
Q ss_pred cHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-CCEE
Q 013204 332 NIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-GDNI 409 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-g~~i 409 (447)
++.++++++++++++.|+++ .+++.+..+++.|.++++++.... . ....+.+.|+++||++.++ ++.+
T Consensus 333 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~-~---------~~~~~~~~l~~~Gv~v~~~~~~~i 402 (433)
T 1z7d_A 333 KLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL-V---------NVLDICLKLKENGLITRDVHDKTI 402 (433)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT-C---------CHHHHHHHHHHTTEECCEETTTEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh-h---------HHHHHHHHHHHCCeEEecCCCCEE
Confidence 88999999999999999887 467777788899999999886431 0 1456888999999999987 4789
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
|++|++.+|+++|++++++|+++++++.++
T Consensus 403 Ri~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 432 (433)
T 1z7d_A 403 RLTPPLCITKEQLDECTEIIVKTVKFFDER 432 (433)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHHC--
T ss_pred EEECCcCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999876544
No 17
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=100.00 E-value=8.4e-54 Score=425.17 Aligned_cols=379 Identities=27% Similarity=0.456 Sum_probs=314.0
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++.+++|+++||.||++||||++++++++|||+||+|++++.+++++....+. ..+.+...++++++++++
T Consensus 57 ~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~--- 131 (439)
T 2oat_A 57 PLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSR--AFYNNVLGEYEEYITKLF--- 131 (439)
T ss_dssp CCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCT--TSEESSHHHHHHHHHHHH---
T ss_pred CCCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccC--ccCCHHHHHHHHHHHHhc---
Confidence 468999999999999999999999999999999999999999999999987543322 234567889999999987
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHh-cC-CCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNA-LG-RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 171 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~-~~-~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
+.++++|++||++|++.|+++++.+... +| .+++++||+++++|||++..++..++.+.++..+.+....+..+++.+
T Consensus 132 g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d 211 (439)
T 2oat_A 132 NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYND 211 (439)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSSC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCCC
Confidence 4679999999999999999998764321 22 234579999999999998888777765544444433323333343321
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC
Q 013204 172 YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251 (447)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g 251 (447)
+++|++.+. .+++++|++||+++++|.++++++++++|+++|++||++||+||+|+|||
T Consensus 212 ------------------~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g 270 (439)
T 2oat_A 212 ------------------LPALERALQ---DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLA 270 (439)
T ss_dssp ------------------HHHHHHHTT---STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred ------------------HHHHHHHhC---CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCc
Confidence 477888774 24689999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 252 ~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
++|..++++.+++.||++++||++++|++|+|++++++++++.+. ...+.+||+++|++++++.++|+.++++
T Consensus 271 ~~g~~~~~~~~~~~~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~-------~~~~~~t~~~~~~~~aaa~aal~~~~~~ 343 (439)
T 2oat_A 271 RTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIK-------PGEHGSTYGGNPLGCRVAIAALEVLEEE 343 (439)
T ss_dssp TTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSC-------TTSSCCSSTTCHHHHHHHHHHHHHHHHT
T ss_pred cCCcchhHHHhCCCCcEEEecccccCCCCCeEEEEECHHHHhccC-------CCCcccCCCcCHHHHHHHHHHHHHHhhh
Confidence 999888888899999999999999987579999999999888774 2246678999999999999999988877
Q ss_pred cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEE
Q 013204 332 NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIM 410 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR 410 (447)
++.++++++++++++.|+++ +++.+..+++.|.++++++...... ....+.+.|+++||++.+.+ +.+|
T Consensus 344 ~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~g~~~~v~l~~~~~~---------~~~~l~~~l~~~Gv~v~~~~~~~iR 413 (439)
T 2oat_A 344 NLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIVIKETKDW---------DAWKVCLRLRDNGLLAKPTHGDIIR 413 (439)
T ss_dssp THHHHHHHHHHHHHHHHTTS-CTTTEEEEEEETTEEEEEECCCSSC---------CHHHHHHHHHHTTEECCBSSSSEEE
T ss_pred hHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeeeEEEEEEecCccH---------HHHHHHHHHHHCCeEEecCCCCEEE
Confidence 88999999999999999887 5666667888999999988643100 14568889999999999864 6799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
++|++.+|+++|++++++|++++++
T Consensus 414 i~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 414 FAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EECccCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998754
No 18
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=2.5e-53 Score=421.97 Aligned_cols=386 Identities=24% Similarity=0.362 Sum_probs=310.8
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++++++|+++||.|||+||||++++++++|||+||+|.+|+.+++++... ++.+++...++++++++.++
T Consensus 36 ~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~-- 109 (434)
T 3l44_A 36 GAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVL----YGTPTALEVKFAKMLKEAMP-- 109 (434)
T ss_dssp SCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSC----CSSCCHHHHHHHHHHHHHCT--
T ss_pred CCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcC----CCCCCHHHHHHHHHHHHhCC--
Confidence 689999999999999999999999999999999999999999999999987421 24578889999999999974
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCC----CCC---Cccee
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFD----LPA---PFVLH 166 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~----~~~---~~~~~ 166 (447)
+.++++|++||+||++.|+++++.+ +++++||+++++|||++..++..++......... .+. .....
T Consensus 110 ~~~~v~~~~sGsea~~~ai~~a~~~------~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 183 (434)
T 3l44_A 110 ALDKVRFVNSGTEAVMTTIRVARAY------TGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVIT 183 (434)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEE
T ss_pred CCCEEEEeCchHHHHHHHHHHHHHh------hCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEe
Confidence 6789999999999999999998866 3568999999999999988887776432211100 000 01111
Q ss_pred cCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehh
Q 013204 167 TDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEV 246 (447)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv 246 (447)
+++ +++++|++++.... +++++|++||+++++|.++++++++++|+++|++||++||+||+
T Consensus 184 ~~~------------------~d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv 244 (434)
T 3l44_A 184 VPF------------------NNVETLKEALDKWG-HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEV 244 (434)
T ss_dssp ECT------------------TCHHHHHHHHHHHG-GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECT
T ss_pred cCc------------------ccHHHHHHHHHhCC-CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 111 12477888876532 47899999999999999999999999999999999999999999
Q ss_pred hcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHH
Q 013204 247 ICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK 326 (447)
Q Consensus 247 ~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~ 326 (447)
|+|| ++|..++++++++.||++++||++++| +|+|++++++++++.+... +.+.+++|++++++++++++++|+
T Consensus 245 ~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G-~~iG~~~~~~~i~~~~~~~----~~~~~~~t~~~~~~a~aaa~aal~ 318 (434)
T 3l44_A 245 ITAF-RFMYGGAQDLLGVTPDLTALGKVIGGG-LPIGAYGGKKEIMEQVAPL----GPAYQAGTMAGNPASMASGIACLE 318 (434)
T ss_dssp TTTT-TSSSSCHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTBTTT----SSBCCCCTTTTCHHHHHHHHHHHH
T ss_pred ccce-eccccHHHHHcCCCCCeeehhhhhcCC-cCeeeEEEcHHHHHhhccC----CCcccCCCCCcCHHHHHHHHHHHH
Confidence 9999 999888888899999999999999977 8999999999999887531 234577899999999999999999
Q ss_pred HHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCC--CCCCcchHHHHHHHHHHcCceEE
Q 013204 327 IYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEP--FPPEWGIGAYFGAQCEKHGMLVR 403 (447)
Q Consensus 327 ~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Gi~~~ 403 (447)
.++++++.++++++++++++.|+++ ..++.+..+++.|.++.+.+......... ..........+.+.|+++||++.
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~ 398 (434)
T 3l44_A 319 VLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLA 398 (434)
T ss_dssp HHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECC
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEe
Confidence 8877889999999999999999887 45677778899999999988543211000 00011123568888999999999
Q ss_pred eeC-CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 404 VSG-DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 404 ~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+++ ..+|++ +.+|+++|++++++|+++++++++
T Consensus 399 ~~~~~~~rl~--~~~t~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 399 PSKYEAWFLT--TEHTKEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp SSTTCCEECC--TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCcEEEe--cccCHHHHHHHHHHHHHHHHHHHh
Confidence 876 458885 799999999999999999987754
No 19
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=100.00 E-value=3.2e-53 Score=416.04 Aligned_cols=376 Identities=31% Similarity=0.512 Sum_probs=320.6
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++.+++|++++|.||++||||+++++.++|||+||++.+++.+++++..+.++ ..+.+...++++++++.+
T Consensus 16 ~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~-- 91 (395)
T 3nx3_A 16 KRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSN--LYYNENIAAAAKNLAKAS-- 91 (395)
T ss_dssp GSCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCT--TSBCHHHHHHHHHHHHHH--
T ss_pred CCCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhcccccc--ccCCHHHHHHHHHHHHhc--
Confidence 4578999999999999999999999999999999999999999999999987544332 346788999999999987
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
+.++++|++||++|++.|+++++.+....| +++++||+++++|||++..+...++.+.+...+.........+++++
T Consensus 92 -~~~~v~~~~gg~ea~~~al~~~~~~~~~~g-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d- 168 (395)
T 3nx3_A 92 -ALERVFFTNSGTESIEGAMKTARKYAFNKG-VKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYND- 168 (395)
T ss_dssp -TCSEEEEESSHHHHHHHHHHHHHHHHHHTT-CTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTC-
T ss_pred -CCCeEEEeCCHHHHHHHHHHHHHHHhhccC-CCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCC-
Confidence 367999999999999999999887655555 45689999999999999999888887666555443333344444322
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
+++|++.+. +++++|++||+++++|.++++++++++|+++|++||++||+||+|+|||+
T Consensus 169 -----------------~~~l~~~l~----~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~ 227 (395)
T 3nx3_A 169 -----------------ISSVEKLVN----EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGR 227 (395)
T ss_dssp -----------------HHHHHTTCC----TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred -----------------HHHHHHhcc----CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCc
Confidence 367776663 56899999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhH-HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEV-SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
+|..++.+.+++.||++++||++++| +|+|++++++++ ++.+. ...++.++..++++++++.++++.++.+
T Consensus 228 ~g~~~~~~~~~~~~d~~t~sK~~~~G-~~~G~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~aa~aal~~~~~~ 299 (395)
T 3nx3_A 228 SGKFFAYEHAQILPDIMTSAKALGCG-LSVGAFVINQKVASNSLE-------AGDHGSTYGGNPLVCAGVNAVFEIFKEE 299 (395)
T ss_dssp TSSSSGGGGGTCCCSEEEECGGGTTT-SCCEEEEECHHHHHHHSC-------TTCCSSCBSCCHHHHHHHHHHHHHHHHT
T ss_pred CCcchhHHhcCCCCCEEEecccccCC-CceEEEEEchhhhhhhcC-------CcccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 99888888899999999999999987 899999999998 77775 3346678999999999999999988778
Q ss_pred cHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEE
Q 013204 332 NIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNI 409 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~i 409 (447)
++.++++++.+++++.|+++ ..++.+..+++.|.++.+.+.+.. ....+.+.|+++||++.+++ +.+
T Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~~~~l~~~Gi~v~~~~~~~i 368 (395)
T 3nx3_A 300 KILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLDKSV-----------KVAKVIQKCQENALLLISCGENDL 368 (395)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTS-----------CHHHHHHHHHHTTEECEEETTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeEEEEEEEEeCCcc-----------hHHHHHHHHHHCCCEEecCCCCEE
Confidence 88999999999999999886 456777788899999999886532 14568889999999999885 679
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
||+|++.+|++++++++++|++++++
T Consensus 369 Ri~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 369 RFLPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998763
No 20
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=100.00 E-value=1.1e-52 Score=418.04 Aligned_cols=397 Identities=23% Similarity=0.406 Sum_probs=318.0
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++++++|++++|.||++|+||++++++++|||+||++.+++.+++++...+ +...++++...++++++++.++ .
T Consensus 24 ~~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~~l~~~la~~~~-~ 101 (439)
T 3dxv_A 24 FFPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGA-TILSASNAPAVTLAERLLASFP-G 101 (439)
T ss_dssp SSCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCS-CSSSSEEHHHHHHHHHHHHTTT-C
T ss_pred CCCceEEEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCc-cccccCCHHHHHHHHHHHHhCC-C
Confidence 4799999999999999999999999999999999999999999999999876332 2335577889999999999863 3
Q ss_pred CC-CeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcc--ccCCCCCCCCcceecCCC
Q 013204 94 KM-AKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPA--LHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 94 ~~-~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 170 (447)
+. ++++|++||++|++.|+++++.+ .++++||+++++|||++..++..++... ++..+......+..++++
T Consensus 102 ~~~~~v~~~~ggsea~~~al~~~~~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (439)
T 3dxv_A 102 EGTHKIWFGHSGSDANEAAYRAIVKA------TGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYR 175 (439)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHHH------HSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSS
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHH------hCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCC
Confidence 45 69999999999999999998755 3457899999999999998888777544 444333222222333333
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 171 HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
+.+. .... ..++++|++++....++++++|++||+++++|.+.++++++++|+++|++||++||+||+|+||
T Consensus 176 ~~~~----~~~~----~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~ 247 (439)
T 3dxv_A 176 PYRN----DPTG----DAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGL 247 (439)
T ss_dssp CBTT----BTTS----HHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred cccc----cccH----HHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 2111 1111 1146888888854445679999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
|++|..++.+.+++.||+++|||++++| +|+|++++++++++.+. ...+.+++ .+++++++++++++.+++
T Consensus 248 g~~g~~~~~~~~~~~~di~s~sK~~~~G-~riG~~~~~~~~~~~~~-------~~~~~~t~-~~~~~~~aa~aal~~~~~ 318 (439)
T 3dxv_A 248 ARSGRLHCFEHEGFVPDILVLGKGLGGG-LPLSAVIAPAEILDCAS-------AFAMQTLH-GNPISAAAGLAVLETIDR 318 (439)
T ss_dssp TTTSSSSGGGGTTCCCSEEEECGGGGTT-SCCEEEEEEHHHHTSCS-------SSSCCTTT-TCHHHHHHHHHHHHHHHH
T ss_pred CcCchhhHHHhcCCCCCEEEEcchhcCC-cceEEEEECHHHHhhhc-------CCCcCCCc-ccHHHHHHHHHHHHHHHh
Confidence 9999878888999999999999999987 69999999999988775 22456788 999999999999998877
Q ss_pred hcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---
Q 013204 331 RNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--- 406 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--- 406 (447)
+++.++++++.+++++.|+++ ..++.+..+++.|.++++.+........+ .......+.+.|+++||++.+++
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~Gv~v~~~~~~~ 395 (439)
T 3dxv_A 319 DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREP---ARAETAKLIYRAYQLGLVVYYVGMNG 395 (439)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEE---CHHHHHHHHHHHHHHTEECEEESTTS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCC---CHHHHHHHHHHHHHCCcEEeecCCCC
Confidence 888999999999999999887 45677888899999999888543211110 11124568888999999999886
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+.+|++|++.+|+++|++++++|+++++++.+
T Consensus 396 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 427 (439)
T 3dxv_A 396 NVLEFTPPLTITETDIHKALDLLDRAFSELSA 427 (439)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 67999999999999999999999999987643
No 21
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=100.00 E-value=3.9e-52 Score=413.27 Aligned_cols=402 Identities=26% Similarity=0.482 Sum_probs=320.3
Q ss_pred CCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCC
Q 013204 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASK 94 (447)
Q Consensus 15 ~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 94 (447)
+|+++.+++|+++||.||++|+||+++.++.+|||+||+|++++.+++++.... ..+++++...++++++++.++ .+
T Consensus 25 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~la~~~~-~~ 101 (433)
T 1zod_A 25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHL--FSEMLSRPVVDLATRLANITP-PG 101 (433)
T ss_dssp CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCC--CTTCCCHHHHHHHHHHHHHSC-TT
T ss_pred CCceEEEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCccc--ccccCCHHHHHHHHHHHHhCC-CC
Confidence 688999999999999999999999999998999999999999999999875432 124567788999999999873 35
Q ss_pred CCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCccc
Q 013204 95 MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWR 174 (447)
Q Consensus 95 ~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
.++++|++||++|++.|+++++.+ +++++||+++++|||++..++..++.+ +...+......+..++.+..++
T Consensus 102 ~~~v~~~~gg~ea~~~a~~~~~~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~ 174 (433)
T 1zod_A 102 LDRALLLSTGAESNEAAIRMAKLV------TGKYEIVGFAQSWHGMTGAAASATYSA-GRKGVGPAAVGSFAIPAPFTYR 174 (433)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHH------HTCCEEEEETTCCCCSSHHHHHTCCSS-CCSSSCCCCTTEEEECCCCTTS
T ss_pred cCEEEEeCchHHHHHHHHHHHHHh------hCCCeEEEECCCcCCCChhHHhhcCCc-cccccCCCCCCceEecCCcccc
Confidence 789999999999999999987654 345789999999999998888776543 2333332233444555543322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccc
Q 013204 175 YAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 254 (447)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g 254 (447)
.+.. .+.+.....++++|++.+....++++++|++||+++++|.++++++++++|+++|++||++||+||+|+|||++|
T Consensus 175 ~~~~-~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g 253 (433)
T 1zod_A 175 PRFE-RNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG 253 (433)
T ss_dssp CCCE-ETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred cccC-CchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCc
Confidence 1111 011112334568888888754445789999999999999889999999999999999999999999999999998
Q ss_pred cccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHH
Q 013204 255 TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIV 334 (447)
Q Consensus 255 ~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~ 334 (447)
..++++.+++.||++++||++++| +|+|++++++++++.+... ...+++|+++++++++++.++++.++++++.
T Consensus 254 ~~~~~~~~~~~~di~s~sK~~~~G-~~ig~~~~~~~~~~~~~~~-----~~~~~~t~~~~~~~~~a~~aal~~~~~~~~~ 327 (433)
T 1zod_A 254 TMFACQRDGVTPDILTLSKTLGAG-LPLAAIVTSAAIEERAHEL-----GYLFYTTHVSDPLPAAVGLRVLDVVQRDGLV 327 (433)
T ss_dssp SSSTHHHHTCCCSEEEECHHHHTT-SSCEEEEECHHHHHHHHHT-----TCCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred hHhHHhhcCCCCCEEEecccccCC-CCeeEEEEhHHHHHhhccC-----CCCCCCCCCcCHHHHHHHHHHHHHHHhCCHH
Confidence 877777888999999999999987 8999999999999888642 2334578899999999999999988777889
Q ss_pred HHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----CE
Q 013204 335 EQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----DN 408 (447)
Q Consensus 335 ~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----~~ 408 (447)
++++++++++++.|+++ ..++.+..+++.|.++++++........ + .......+.+.|+++||++.+++ +.
T Consensus 328 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~--~-~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~ 404 (433)
T 1zod_A 328 ARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKE--P-ADGLGAKITRECMNLGLSMNIVQLPGMGGV 404 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTE--E-CTTHHHHHHHHHHHTTEECCEECCTTSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccC--C-ChHHHHHHHHHHHHCCCeEeccCCCCCCCE
Confidence 99999999999999887 3456677788899999988864321100 0 00134568888999999998874 67
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+||+|++.+|+++|++++++|+++++++
T Consensus 405 lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 405 FRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988654
No 22
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=100.00 E-value=4.3e-53 Score=419.52 Aligned_cols=384 Identities=23% Similarity=0.341 Sum_probs=310.0
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++++++|+++||.|||+||||++++++++|||+||+|++|+.++++++.. .+.+++...++++++++.+.
T Consensus 33 ~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~- 107 (429)
T 3k28_A 33 GMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTS----FGAPTEIENKLAKLVIERVP- 107 (429)
T ss_dssp TCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSC----CSSCCHHHHHHHHHHHHHST-
T ss_pred CCCCceEEEeecCEEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcC----cCCCCHHHHHHHHHHHHhCC-
Confidence 4689999999999999999999999999999999999999999999999987532 13478889999999999974
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCC-------cce
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAP-------FVL 165 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 165 (447)
+.++++|++||+||++.|+++++.+ +++++||+++++|||++..++..++............. ...
T Consensus 108 -~~~~v~~~~~Gsea~~~ai~~a~~~------~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 180 (429)
T 3k28_A 108 -SIEIVRMVNSGTEATMSALRLARGY------TGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTI 180 (429)
T ss_dssp -TCSEEEEESSHHHHHHHHHHHHHHH------HTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEE
T ss_pred -CCCEEEEeCChHHHHHHHHHHHHHh------hCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCcee
Confidence 6789999999999999999999866 35688999999999999888876664322111100000 001
Q ss_pred ecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEeh
Q 013204 166 HTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADE 245 (447)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DE 245 (447)
.+++ +++++|++++.... +++++|++||+++++|.++++++++++|+++|++||++||+||
T Consensus 181 ~~~~------------------~d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE 241 (429)
T 3k28_A 181 TVAY------------------NDLESVKYAFEQFG-DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDE 241 (429)
T ss_dssp EEET------------------TCHHHHHHHHHHHG-GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEC
T ss_pred ecCC------------------CCHHHHHHHHHhCC-CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 1111 12478888876532 5789999999999999999999999999999999999999999
Q ss_pred hhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHH
Q 013204 246 VICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEAL 325 (447)
Q Consensus 246 v~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l 325 (447)
+|+|| ++|..++.+++++.||++++||++++| +|+|++++++++++.+... +.+.+++|++++++++++++++|
T Consensus 242 v~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G-~~iG~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~a~aaa~aal 315 (429)
T 3k28_A 242 VMTGF-RVAYNCGQGYYGVTPDLTCLGKVIGGG-LPVGAYGGKAEIMRQVAPS----GPIYQAGTLSGNPLAMAAGYETL 315 (429)
T ss_dssp TTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTBTTT----SSBCCCCTTTTCHHHHHHHHHHH
T ss_pred ccccc-ccCcchHHHHhCCCCceehhhhhhcCC-CCeEEEEEcHHHHhhhccC----CCccccCCCCCChHHHHHHHHHH
Confidence 99999 999888888889999999999999887 8999999999999887531 23456779999999999999999
Q ss_pred HHHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCC--CCCCcchHHHHHHHHHHcCceE
Q 013204 326 KIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEP--FPPEWGIGAYFGAQCEKHGMLV 402 (447)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Gi~~ 402 (447)
+.++ +++.++++++++++++.|+++ ..++.+..+++.|.++++.+......... ..........+.+.|+++||++
T Consensus 316 ~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v 394 (429)
T 3k28_A 316 VQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFL 394 (429)
T ss_dssp HTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEEC
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEE
Confidence 9765 678899999999999999887 55677778899999999987643211100 0011113456888999999999
Q ss_pred EeeC-CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 403 RVSG-DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 403 ~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+++ +.+|++ +.+|++++++++++|+++++++
T Consensus 395 ~~~~~~~~r~~--~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 395 PPSQFEGLFLS--TVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp CSSTTSCBCCC--TTCCHHHHHHHHHHHHHHHHTC
T ss_pred ecCCCCCEEEE--CCCCHHHHHHHHHHHHHHHHHH
Confidence 9875 458875 8999999999999999998754
No 23
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=100.00 E-value=1.6e-52 Score=413.93 Aligned_cols=379 Identities=29% Similarity=0.517 Sum_probs=311.9
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++.+++|+++||.||++||||+++++++++||+||++.+++.+++++....+. ..+.+...++++++++++
T Consensus 38 ~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~--- 112 (420)
T 2pb2_A 38 PADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSN--VFTNEPALRLGRKLIDAT--- 112 (420)
T ss_dssp -CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCT--TSCCHHHHHHHHHHHHHS---
T ss_pred CCCceEEeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccC--ccCCHHHHHHHHHHHhhC---
Confidence 478999999999999999999999999999999999999999999999987544322 246788899999999986
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
+.++++|++||++|++.|+++++.+...+|.+++++||+++++|||++..++..++.+.++.++.+....+..+++++
T Consensus 113 g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d-- 190 (420)
T 2pb2_A 113 FAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFND-- 190 (420)
T ss_dssp SCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTC--
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCC--
Confidence 467999999999999999999887666656566678999999999998887776665544433332222333333321
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
+++|++.+. +++++|++||+++++|.++++.+++++|+++|++||++||+||+|+||+++
T Consensus 191 ----------------~~~le~~i~----~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~ 250 (420)
T 2pb2_A 191 ----------------LHAVKAVMD----DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRT 250 (420)
T ss_dssp ----------------HHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred ----------------HHHHHHHhc----cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccC
Confidence 477777664 468999999999999988899999999999999999999999999999999
Q ss_pred ccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcH
Q 013204 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI 333 (447)
Q Consensus 254 g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~ 333 (447)
|..++++.+++.||+++|||++++| +|+|++++++++++.+.. ..+..++++++++++++.++|+.++++++
T Consensus 251 g~~~~~~~~~~~~diit~sK~l~~G-~~iG~~~~~~~l~~~l~~-------~~~~~t~~~~~~~~aa~~a~L~~~~~~~~ 322 (420)
T 2pb2_A 251 GDLFAYMHYGVTPDILTSAKALGGG-FPVSAMLTTQEIASAFHV-------GSHGSTYGGNPLACAVAGAAFDIINTPEV 322 (420)
T ss_dssp SSSSHHHHHTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTCC-----------CCEECCCHHHHHHHHHHHHHHSSHHH
T ss_pred CcHHHHHhcCCCCCeEEecccccCC-CceEEEEEhHHHHHhhcC-------CCcCcccCcCHHHHHHHHHHHHHHHhccH
Confidence 9877777788899999999999977 799999999998776642 23556889999999999999998877778
Q ss_pred HHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEE
Q 013204 334 VEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMM 411 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~ 411 (447)
.++++++++++++.|+++ .+++.+..+++.|.++.+++...... ....+.+.|+++||++.+++ +.+|+
T Consensus 323 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~---------~~~~l~~~l~~~Gi~v~~~~~~~iRl 393 (420)
T 2pb2_A 323 LQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKG---------RARDFLYAGAEAGVMVLNAGADVMRF 393 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECGGGTT---------CHHHHHHHHHHTTEECEESSTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEecceEEEEEECCCchH---------HHHHHHHHHHHCCCEEEeCCCCEEEE
Confidence 899999999999999886 24566667888999999888643100 14568889999999999874 67999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+||+.++++++++++++|+++++++
T Consensus 394 ~~~~~~t~eei~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 394 APSLVVEEADIHEGMQRFAQAVGKV 418 (420)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 24
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=100.00 E-value=2.1e-52 Score=414.68 Aligned_cols=390 Identities=22% Similarity=0.332 Sum_probs=298.9
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++++++|+++||.||++||||++++++++|||+||+|++|+.++++++... +.+++...++++++++.++
T Consensus 33 ~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~----~~~~~~~~~la~~l~~~~~- 107 (429)
T 4e77_A 33 GGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSF----GAPTEMEVKMAQLVTDLVP- 107 (429)
T ss_dssp CSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCC----SSCCHHHHHHHHHHHHHST-
T ss_pred CCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCccc----CCCCHHHHHHHHHHHhhCC-
Confidence 45899999999999999999999999999999999999999999999999875321 3477889999999999974
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
+.++++|++||+||++.|+++++.+ +++++||+++++|||++...+...+......... ..........+..
T Consensus 108 -~~~~v~~~~sGsea~~~al~~a~~~------~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 179 (429)
T 4e77_A 108 -TMDMVRMVNSGTEATMSAIRLARGY------TGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQP-NSPGVPTDFAKHT 179 (429)
T ss_dssp -TCSEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCC------------------C-CCTTSCGGGGTTE
T ss_pred -CCCEEEEeCcHHHHHHHHHHHHHHh------hCCCEEEEEcCccCCCChhhhhhcCCcccccCCC-CcCCCCCccCCce
Confidence 5789999999999999999998766 3568999999999999876654443221110000 0000000000000
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
... + .+++++|++++.... +++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+|| +
T Consensus 180 ~~~--~--------~~d~~~le~~l~~~~-~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r 247 (429)
T 4e77_A 180 LTC--T--------YNDLASVRQAFEQYP-QEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-R 247 (429)
T ss_dssp EEE--C--------TTCHHHHHHHHHHST-TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-T
T ss_pred eec--C--------CCCHHHHHHHHHhcC-CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-c
Confidence 000 0 012478888887533 478999999999999999999999999999999999999999999999 9
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN 332 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~ 332 (447)
+|..++.+.+++.||++++||++++| +|+|++++++++++.+... +...+.+|+++++++++++.++|+.+++++
T Consensus 248 ~g~~~~~~~~~~~pdi~t~sK~~~~G-~~~G~~~~~~~~~~~l~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 322 (429)
T 4e77_A 248 VALAGAQDYYHVIPDLTCLGKIIGGG-MPVGAFGGRREVMNALAPT----GPVYQAGTLSGNPIAMAAGFACLTEISQVG 322 (429)
T ss_dssp TBTTCHHHHTTCCCSEEEEEGGGGTT-SCCEEEEECHHHHTTBTTT----SSBCC--CCCCCHHHHHHHHHHHHHHTSTT
T ss_pred cCcchHHHhcCCCCCeeeecccccCC-CCeEEEEECHHHHHHhccC----CCccccCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 99888888999999999999999987 8999999999999887532 233567899999999999999999887788
Q ss_pred HHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCC----CCcchHHHHHHHHHHcCceEEeeCC
Q 013204 333 IVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFP----PEWGIGAYFGAQCEKHGMLVRVSGD 407 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~Gi~~~~~g~ 407 (447)
+.++++++++++++.|+++ ..++....+++.|.++++.+..... ...+. ........+.+.|+++||++.+++.
T Consensus 323 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~ 401 (429)
T 4e77_A 323 VYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADT-VTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAF 401 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSC-CCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcc-cccccccccccHHHHHHHHHHHHHCCeEEeecCC
Confidence 9999999999999999886 5567777888999999998865321 00000 0111235688899999999998763
Q ss_pred -EEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 408 -NIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 408 -~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+|+ ++.+|+++|++++++|++++++
T Consensus 402 ~~~~~--~~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 402 EAGFM--SLAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp SCEEC--CTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCEEE--eccCCHHHHHHHHHHHHHHHHh
Confidence 4554 5899999999999999998753
No 25
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=100.00 E-value=3.9e-53 Score=423.59 Aligned_cols=395 Identities=20% Similarity=0.354 Sum_probs=299.4
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccc-cCc--CCChHHHHHHHHHHHhc
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS-FWN--RTTKPSLDLAKELLEMF 90 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~--~~~~~~~~l~~~l~~~~ 90 (447)
.+|.++++++|+++||.|||+||||++++++++|||+||+|++|+.+++......+. .++ ...+...++++++++.+
T Consensus 44 ~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~ 123 (472)
T 1ohv_A 44 HFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVA 123 (472)
T ss_dssp CCCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGC
T ss_pred cCCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhC
Confidence 467788999999999999999999999999999999999999999998643211111 111 12344555555566654
Q ss_pred CcCCCCeEEEeCChhhHHHHHHHHHHHHHHh--cC----------------CCC--cceEEEEcCCCccchhhhhcccCC
Q 013204 91 TASKMAKVFFTNSGSEANDTQVKLVWYYNNA--LG----------------RPN--KKKFIARQKSYHGSTLIAASLSGL 150 (447)
Q Consensus 91 ~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~--~~----------------~~~--~~~vi~~~~~yhg~~~~~~~~~~~ 150 (447)
+.+.++|+|++||+|||+.|+|+++.+++. ++ .++ +++||+++++|||++.+++..++.
T Consensus 124 -~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~ 202 (472)
T 1ohv_A 124 -PKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHS 202 (472)
T ss_dssp -CTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCS
T ss_pred -CCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCC
Confidence 336789999999999999999999876431 11 123 589999999999999999888876
Q ss_pred ccccCCCCCCCCcceecCCCCcccCCCCCC--ChhHHHHHHHHHHHHHHHhhCC--CcEEEEEEccccCCCCCccCChhH
Q 013204 151 PALHQKFDLPAPFVLHTDCPHYWRYAHPGE--TEEEYSTRLANNLEDLILKEGP--ETIAAFIAEPVIGAGGVIPPPATY 226 (447)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~le~~l~~~~~--~~~a~vi~epv~~~~G~~~~~~~~ 226 (447)
..++.. ..+...+.++++|. ++++.+.. ..+.....++++|++++....+ .++++|++||+++++|.++|+++|
T Consensus 203 ~~~~~~-~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~ 280 (472)
T 1ohv_A 203 KAIHKI-DIPSFDWPIAPFPR-LKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDF 280 (472)
T ss_dssp CHHHHT-TSCCCCCCEECCCC-CCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHH
T ss_pred cccccc-CCCCCCCcccCCCc-ccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHH
Confidence 543211 11111222334332 11110000 0012224467889988865321 268999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCC--CCeeeeccc-CCCcccceeEEEeChhHHHHhhhccCCCC
Q 013204 227 FEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIK--PDLVSFAKA-LSSAYMPIGAILVSPEVSEVIHSQSNTLG 303 (447)
Q Consensus 227 l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~--~d~v~~sK~-l~gg~~~~g~~~~~~~~~~~~~~~~~~~~ 303 (447)
|++|+++|++||++||+||||+|||++|..++++.+++. ||+++|||+ ++||+ ++ ++++. .+ .
T Consensus 281 l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~l~GG~-----~~-~~~~~-~~-------~ 346 (472)
T 1ohv_A 281 FRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGF-----FH-KEEFR-PN-------A 346 (472)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGGSSEEE-----EE-CGGGS-CS-------S
T ss_pred HHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEccccccCCc-----cC-chhhc-cc-------c
Confidence 999999999999999999999999999987788888986 999999999 77652 33 55542 11 2
Q ss_pred ccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCC-ceeeEeeeeeEEEEEeecCCCCCCCC
Q 013204 304 SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSP-IIGEIRGTGLILGTEFADNKSPNEPF 381 (447)
Q Consensus 304 ~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~ 381 (447)
.+.+.+|++++|+++++++++|+.+.++++.++++++++++++.|+++ .+++ .+..+++.|.++.+++.+..
T Consensus 347 ~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~~~~~~~------ 420 (472)
T 1ohv_A 347 PYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDES------ 420 (472)
T ss_dssp SSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECSSHH------
T ss_pred cccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEEEeCChh------
Confidence 345678999999999999999998887888999999999999999887 3456 46678889999888764311
Q ss_pred CCCcchHHHHHHHHHHcCceEEeeC-CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 382 PPEWGIGAYFGAQCEKHGMLVRVSG-DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 382 ~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
....+.+.|+++||++.+.+ +.|||+|++.+|+++|++++++|+++++++
T Consensus 421 -----~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 421 -----IRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp -----HHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred -----HHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 24568889999999999885 689999999999999999999999988653
No 26
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=100.00 E-value=4.8e-52 Score=413.87 Aligned_cols=396 Identities=21% Similarity=0.331 Sum_probs=313.7
Q ss_pred CCCeEE--EEecCcEEEe-CCCCEEEecCCccccccCCCCCHHHH-H-HHHH---HHhcCCcccccCcCCChHHHHHHHH
Q 013204 14 VHPLVI--EKSEGSYVYD-VNGKKYLDSLAGLWCTALGGSEPRLV-A-AATA---QLNTLPFYHSFWNRTTKPSLDLAKE 85 (447)
Q Consensus 14 ~~~~~~--~~~~g~~~~d-~dg~~~lD~~~~~~~~~lG~~~p~v~-~-a~~~---~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (447)
.+|.++ .+++|+++|| .||++||||++++++++|||+||+|+ + |+.+ +++++..++ ..++++...+++++
T Consensus 32 ~~~~~~~~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~la~~ 109 (449)
T 2cjg_A 32 GLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSN--SDVYSVAMARFVET 109 (449)
T ss_dssp SCSSCBCTTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCT--TTCCCHHHHHHHHH
T ss_pred CCCeeEEEeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCC--cccCCHHHHHHHHH
Confidence 345555 5999999999 99999999999999999999999999 9 9999 887654322 13477888999999
Q ss_pred HHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhc----C--CCCcceEEEEcCCCccchhhhhcccCC-ccccCCCC
Q 013204 86 LLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL----G--RPNKKKFIARQKSYHGSTLIAASLSGL-PALHQKFD 158 (447)
Q Consensus 86 l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~----~--~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~~~~ 158 (447)
+++++...+.++|+|++||+||++.|+++++.+...+ | .+++++||+++++|||++..++..++. +.++..+.
T Consensus 110 la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 189 (449)
T 2cjg_A 110 FARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFP 189 (449)
T ss_dssp HHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSC
T ss_pred HHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCC
Confidence 9999743467899999999999999999887654311 1 123578999999999999988888875 44444443
Q ss_pred CCCCcceecCCCCcccCCCCCCCh---hHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHH
Q 013204 159 LPAPFVLHTDCPHYWRYAHPGETE---EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVK 235 (447)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~ 235 (447)
.....+..+++++. .... +.....++++|++.+... ++++++|++||+++++|.++++++++++|+++|+
T Consensus 190 ~~~~~~~~~~~~d~------~~~~~~~~~~~~~~~~~le~~i~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~ 262 (449)
T 2cjg_A 190 KFDWPRIDAPYMRP------GLDEPAMAALEAEALRQARAAFETR-PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCD 262 (449)
T ss_dssp CCCCCEECCCCCCT------TCCHHHHHHHHHHHHHHHHHHHHHS-TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHH
T ss_pred CCCCCcEEEcCCCc------hhhccccchhhHHHHHHHHHHHHhc-CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHH
Confidence 33333334443320 0110 111234567788888643 2578999999999999999999999999999999
Q ss_pred hcCCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcH
Q 013204 236 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHP 315 (447)
Q Consensus 236 ~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 315 (447)
+||++||+||+|+|+|++|..++++++++.||++++||++ |+|++++++++++.+... ......+.+|+++++
T Consensus 263 ~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l-----~iG~~~~~~~~~~~l~~~--~~~~~~~~~t~~~n~ 335 (449)
T 2cjg_A 263 EFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT-----QVCGVMAGRRVDEVADNV--FAVPSRLNSTWGGNL 335 (449)
T ss_dssp HTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG-----SSEEEEECGGGGGSTTCT--TTSTTSSCCSSSSCH
T ss_pred HCCcEEEEeccccCCCccCcceeecccCCCceEEEecCcc-----cEEEEEECHHHhhhhhhc--ccCCcccccCCCCCH
Confidence 9999999999999999999877778889999999999998 789999999988763210 001234567899999
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-cCCCc-eeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHH
Q 013204 316 VSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPI-IGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGA 393 (447)
Q Consensus 316 ~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~-~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 393 (447)
++++++.++|+.++++++.++++++++++++.|+++ ..++. +..+++.|.++.+++.... ....+.+
T Consensus 336 ~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~~~ 404 (449)
T 2cjg_A 336 TDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPTTA-----------DRDELIR 404 (449)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSSHH-----------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECChH-----------HHHHHHH
Confidence 999999999998877788999999999999999887 34564 6678899999988775321 2446888
Q ss_pred HHHHcCceEEeeC-CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 394 QCEKHGMLVRVSG-DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 394 ~l~~~Gi~~~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.|+++||++.+++ +.+|++|++.+|+++|++++++|+++++++
T Consensus 405 ~l~~~Gv~v~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 405 QLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp HHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 8999999999886 689999999999999999999999998754
No 27
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=100.00 E-value=1.5e-50 Score=401.27 Aligned_cols=408 Identities=27% Similarity=0.485 Sum_probs=319.2
Q ss_pred CCCCCCcCccCCCCCCeE-EEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHH
Q 013204 1 MLAPFTAGWQSTDVHPLV-IEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPS 79 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (447)
+|+|++.+.. .+|++ +.+++|+++||.||++|+|++++.+++++||.||+|++++.+++++...++ ...++++..
T Consensus 13 ~~~~~~~~~~---~~~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~ 88 (429)
T 1s0a_A 13 ILHPFTSMTS---PLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVM-FGGITHAPA 88 (429)
T ss_dssp BCCTTCCSSS---CCCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCC-CSSEECHHH
T ss_pred hccccccccc---cCCceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccc-ccccCCHHH
Confidence 4899987653 35665 899999999999999999999999999999999999999999997653321 113356778
Q ss_pred HHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcc-ccCCCC
Q 013204 80 LDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPA-LHQKFD 158 (447)
Q Consensus 80 ~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~-~~~~~~ 158 (447)
.+++++++++++ .+.++++|++||+||++.|+++++.+...+|.+ +++||+++++||++...++..++... ++..+.
T Consensus 89 ~~l~~~la~~~~-~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~-~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~ 166 (429)
T 1s0a_A 89 IELCRKLVAMTP-QPLECVFLADSGSVAVEVAMKMALQYWQAKGEA-RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWK 166 (429)
T ss_dssp HHHHHHHHHHSC-TTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCC-CCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGT
T ss_pred HHHHHHHHHhCC-CCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCC-CCeEEEECCCCCCCchhhhhhcCCchhhccccc
Confidence 899999999874 467899999999999999999876554333433 47899999999999887777665332 222222
Q ss_pred CCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccc-cCCCCCccCChhHHHHHHHHHHhc
Q 013204 159 LPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPV-IGAGGVIPPPATYFEKVQAVVKKY 237 (447)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv-~~~~G~~~~~~~~l~~l~~l~~~~ 237 (447)
........++++.... . +.+...++++|++.+... ++++++|++||+ ++++|.++++++++++|+++|++|
T Consensus 167 ~~~~~~~~~~~~~~~~----~---~~~~~~d~~~l~~~l~~~-~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~ 238 (429)
T 1s0a_A 167 GYLPENLFAPAPQSRM----D---GEWDERDMVGFARLMAAH-RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE 238 (429)
T ss_dssp TTSCCCEEECCCCSBC--------CCCCGGGGHHHHHHHHHH-TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHH
T ss_pred CCCCCceEeCCCcccc----c---ccchHHHHHHHHHHHHhC-CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHc
Confidence 2222233444432100 0 001112357788877643 246889999999 999999999999999999999999
Q ss_pred CCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHH
Q 013204 238 DILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVS 317 (447)
Q Consensus 238 g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 317 (447)
|+++|+||+|+|||++|..++++.+++.||++++||++++|++|+|++++++++++.+.... .+.+.+.+|+++++++
T Consensus 239 ~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~--~~~~~~~~t~~~n~~~ 316 (429)
T 1s0a_A 239 GILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGE--AGCFMHGPTFMGNPLA 316 (429)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTST--TSSCSCCCTTTTCHHH
T ss_pred CCEEEEeehhhCCcccchHHHhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCC--CcccccCCCCCCCHHH
Confidence 99999999999999998767777788899999999999986579999999999988886421 1223355788999999
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH
Q 013204 318 CAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK 397 (447)
Q Consensus 318 ~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 397 (447)
++++.++++.++++++.++++++++++++.|+++..++.+..+++.|.++.+++.... ....+.+.|++
T Consensus 317 ~~a~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~~l~~~l~~ 385 (429)
T 1s0a_A 317 CAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPV-----------NMAALQKFFVE 385 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSCB-----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEeeEEEEEEECCcc-----------cHHHHHHHHHH
Confidence 9999999998877778899999999999999887435656667788888888875421 14457888999
Q ss_pred cCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 398 HGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 398 ~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+||++.+.++.+|++|++.+|++++++++++|++++++
T Consensus 386 ~Gi~v~~~~~~iRis~~~~~t~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 386 QGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp TTEECCCBTTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred CCCEEeccCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999988889999999999999999999999988754
No 28
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=100.00 E-value=1.6e-51 Score=408.01 Aligned_cols=385 Identities=21% Similarity=0.333 Sum_probs=310.6
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++++++|+++||.||++||||+++++++++||+||+|++|+.++++++..+ ..+++...++++++++.++
T Consensus 32 ~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~----~~~~~~~~~la~~l~~~~~- 106 (427)
T 3fq8_A 32 GGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSF----GAPCALENVLAEMVNDAVP- 106 (427)
T ss_dssp TSCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCC----SSCCHHHHHHHHHHHHHST-
T ss_pred CCCCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCCCc----CCCCHHHHHHHHHHHHhCC-
Confidence 46799999999999999999999999999999999999999999999999875332 2378889999999999874
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCC-------cce
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAP-------FVL 165 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 165 (447)
+.++++|++||+||++.|+++++.+ +++++||+++++|||++..++..++............. .+.
T Consensus 107 -~~~~v~~~~ggsea~~~al~~a~~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (427)
T 3fq8_A 107 -SIEMVRFVNSGTEACMAVLRIMRAY------TGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTL 179 (427)
T ss_dssp -TCSEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEE
T ss_pred -CCCEEEEeCCHHHHHHHHHHHHHHh------hCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCcee
Confidence 6789999999999999999998766 34678999999999998887776654322111100000 011
Q ss_pred ecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEeh
Q 013204 166 HTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADE 245 (447)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DE 245 (447)
..++ +++++|++++... ++++++|++||+++++|.+.++++|+++|+++|++||++||+||
T Consensus 180 ~~~~------------------~d~~~le~~l~~~-~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE 240 (427)
T 3fq8_A 180 TTPY------------------NDLEAVKALFAEN-PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDE 240 (427)
T ss_dssp EEET------------------TCHHHHHHHHHHS-TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred ecCC------------------CCHHHHHHHHHhC-CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 1111 1257888888653 35789999999999999999999999999999999999999999
Q ss_pred hhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHH
Q 013204 246 VICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEAL 325 (447)
Q Consensus 246 v~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l 325 (447)
+|+|| ++|..++.+.+++.||++++||++++| +|+|++++++++++.+... +.+.+++|+++++++++++.+++
T Consensus 241 v~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G-~~~G~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~aa~~aal 314 (427)
T 3fq8_A 241 VITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPA----GPMYQAGTLSGNPLAMTAGIKTL 314 (427)
T ss_dssp TTTBT-TTBTTHHHHHTTCCCSEEEECGGGGTT-SSCEEEEECHHHHTTBTTT----SSBCCCCTTTTCHHHHHHHHHHH
T ss_pred ccccc-ccCcchhhHhcCCCCChhhhhhhhhCC-cceEEEEEcHHHHHhhccC----CCccccCCCCcCHHHHHHHHHHH
Confidence 99999 888878888899999999999999987 8999999999999888632 23457789999999999999999
Q ss_pred HHHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCC--CCCCCcchHHHHHHHHHHcCceE
Q 013204 326 KIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNE--PFPPEWGIGAYFGAQCEKHGMLV 402 (447)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gi~~ 402 (447)
+.++++++.++++++++++++.|+++ ...+....+++.|.++++.+........ ...........+.+.|+++||++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v 394 (427)
T 3fq8_A 315 ELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYL 394 (427)
T ss_dssp HHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEEC
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEE
Confidence 98877889999999999999999887 4456666778899999998865321100 00011112456888999999999
Q ss_pred EeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 403 RVSGDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 403 ~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+++. -|+++++.+|+++|++++++|++++++
T Consensus 395 ~~~~~-~r~~~~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 395 APSQF-EAGFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp CSSTT-SCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCC-CCEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence 88763 266667999999999999999998864
No 29
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=100.00 E-value=4.8e-56 Score=439.34 Aligned_cols=379 Identities=21% Similarity=0.280 Sum_probs=306.4
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++++++|+++||.|||+||||++++++++|||+||+|++|+.++++++.. +.++++...+|++++++.++
T Consensus 81 ~~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~----~~~~~~~~~~Lae~L~~~~p-- 154 (465)
T 2yky_A 81 PFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLN----LSTQTENEALFAEAVCDRFP-- 154 (465)
Confidence 469999999999999999999999999999999999999999999999987421 13467888999999999874
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
+.++++|++||+|||+.|+++++.+ +++++||+++++|||++..++ ++ + ...+ .+. ..+.
T Consensus 155 ~~~~v~~~nSGseA~~~Aik~ar~~------tgr~~ii~~~~~yHG~~~~~~--sg-~-~~~g--~~~---~~~~----- 214 (465)
T 2yky_A 155 SIDLVRFTNSGTEANLMALATATAI------TGRKTVLAFDGGYHGGLLNFA--SG-H-APTN--APY---HVVL----- 214 (465)
Confidence 5678999999999999999998765 567899999999999988777 32 1 1111 100 0011
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
+..+++++|++++... ++++++|++||+++++|.++++++|+++|+++|++||++||+||+|+ | |+
T Consensus 215 -----------~~~~d~~~l~~~l~~~-~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r~ 280 (465)
T 2yky_A 215 -----------GVYNDVEGTADLLKRH-GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S-RL 280 (465)
Confidence 1123457788877643 25789999999999999999999999999999999999999999999 6 89
Q ss_pred ccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcH
Q 013204 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI 333 (447)
Q Consensus 254 g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~ 333 (447)
|..++++++++.||+++|||++++| +|+|++++++++++.+... ..+.+.+.+|+++||+++++++++|+.++++++
T Consensus 281 g~~~a~~~~gv~pDi~t~sK~lg~G-~piG~v~~~~~i~~~l~~~--~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~ 357 (465)
T 2yky_A 281 SGGGAQEMLGISADLTTLGKYIGGG-MSFGAFGGRRDLMERFDPA--RDGAFAHAGTFNNNILTMSAGHAALTQIYTRQA 357 (465)
Confidence 9888889999999999999999997 8999999999999988631 012345678999999999999999999988889
Q ss_pred HHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCC--CCCCcchHHHHHHHHHHcCceEEeeCCEEE
Q 013204 334 VEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEP--FPPEWGIGAYFGAQCEKHGMLVRVSGDNIM 410 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Gi~~~~~g~~iR 410 (447)
.++++++++++++.|+++ .+++++..+++.|.++++.+.+....... -..+......+.+.|+++||++.+++...
T Consensus 358 ~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~~- 436 (465)
T 2yky_A 358 ASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGMYA- 436 (465)
Confidence 999999999999999987 55677778899999999988641100000 00011124458888999999998875322
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
|++.+|+++|++++++|++++++++.
T Consensus 437 --~s~~~t~edid~~l~~l~~~l~~~~~ 462 (465)
T 2yky_A 437 --LSLEIADAGRDAFAEALADFIGEQRA 462 (465)
Confidence 77899999999999999999987643
No 30
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.2e-48 Score=386.42 Aligned_cols=386 Identities=31% Similarity=0.539 Sum_probs=302.9
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCC-CHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGS-EPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
.+|+++.+++|+++||.||++|+|++++.+++++||+ ||+|++++.+++++...+ +...++++...++++++++.++
T Consensus 23 ~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~~l~~~la~~~~- 100 (419)
T 2eo5_A 23 LFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHA-AANDFYNIPQLELAKKLVTYSP- 100 (419)
T ss_dssp CCCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCC-SCSCSCCHHHHHHHHHHHHHSS-
T ss_pred CCCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccc-cccccCCHHHHHHHHHHHHhCC-
Confidence 4788999999999999999999999999999999999 999999999999775332 1123567788999999999873
Q ss_pred CC-CCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc-cccCCCCCCCCcceecCCC
Q 013204 93 SK-MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 93 ~~-~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 170 (447)
.+ .++++|++||+||++.|+++++.+ + +++||+++++|||++..++..++.. .++..+......+..++++
T Consensus 101 ~~~~~~v~~~~gg~ea~~~ai~~~~~~------~-~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (419)
T 2eo5_A 101 GNFQKKVFFSNSGTEAIEASIKVVKNT------G-RKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYP 173 (419)
T ss_dssp CSSCEEEEEESSHHHHHHHHHHHHHTT------S-CCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCC
T ss_pred CCcCCEEEEeCchHHHHHHHHHHHHHh------h-CCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCC
Confidence 33 579999999999999999987633 2 5789999999999998888777654 4444443333334555554
Q ss_pred CcccCCCCCC--C-h-hHHHHHHHHHHH-HHHHhhC-CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEe
Q 013204 171 HYWRYAHPGE--T-E-EEYSTRLANNLE-DLILKEG-PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIAD 244 (447)
Q Consensus 171 ~~~~~~~~~~--~-~-~~~~~~~~~~le-~~l~~~~-~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~D 244 (447)
+.++.+.... + . ++.. .++++|+ +.+.... ++++++|++||+++++|.++++++++++|+++|++||++||+|
T Consensus 174 ~~~~~~~g~~~~~~~~~~~~-~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~D 252 (419)
T 2eo5_A 174 NPYRNPWHINGYENPSELVN-RVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDD 252 (419)
T ss_dssp CSSSCTTCCCTTTCHHHHHH-HHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEE
T ss_pred ccccccccccccccchhhHH-HHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 4332111100 0 0 1222 4568888 8776421 1468899999999999988999999999999999999999999
Q ss_pred hhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHH
Q 013204 245 EVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEA 324 (447)
Q Consensus 245 Ev~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~ 324 (447)
|+|+|||++|..++++.+++.||+++|||++++|++|+|+++++++++ .+ .. .+.+|++.++++++++.++
T Consensus 253 E~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~~-------~~~~t~~~n~~~~~aa~aa 323 (419)
T 2eo5_A 253 EVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-PG-------MHSNTFGGNALACAIGSKV 323 (419)
T ss_dssp CTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC--------------CCCCCHHHHHHHHHH
T ss_pred ccccCCccCcchhhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-Cc-------ccCCCCCCCHHHHHHHHHH
Confidence 999999999877777888889999999999998658999999999877 55 21 3446889999999999999
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe
Q 013204 325 LKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV 404 (447)
Q Consensus 325 l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~ 404 (447)
|+.+++ +.++++++++++++.|+++ +..+++.|.++.+++.... .... +.+.|+++||++.+
T Consensus 324 l~~~~~--~~~~~~~~~~~l~~~L~~~-----~~~~~~~g~~~~i~~~~~~----------~~~~-~~~~l~~~Gv~v~~ 385 (419)
T 2eo5_A 324 IDIVKD--LLPHVNEIGKIFAEELQGL-----ADDVRGIGLAWGLEYNEKK----------VRDR-IIGESFKRGLLLLP 385 (419)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHTTS-----SSEEEEETTEEEEECSCHH----------HHHH-HHHHHHHTTEECEE
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHh-----hhheEeeeEEEEEEEecCc----------cHHH-HHHHHHHCCCEEec
Confidence 997654 7888999999999988775 3356788988888773110 0245 78889999999999
Q ss_pred eC-CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 405 SG-DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 405 ~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
++ +.+||+|++.+|++++++++++|+++++++
T Consensus 386 ~~~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 386 AGRSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp ETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 85 789999999999999999999999988653
No 31
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=100.00 E-value=2.3e-49 Score=393.34 Aligned_cols=385 Identities=23% Similarity=0.355 Sum_probs=300.4
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++.+++|+++||.||++||||+++.+++++||+||+|.+++.+++++... .+++.+...+++++++++++
T Consensus 37 ~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~-- 110 (434)
T 2epj_A 37 PYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGWL----YGAPGEAEVLLAEKILGYVK-- 110 (434)
T ss_dssp SSCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSC----CSSCCHHHHHHHHHHHHHHC--
T ss_pred CCCeeEEeeecCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhCCC----CCCCCHHHHHHHHHHHHhCC--
Confidence 469999999999999999999999999999999999999999999999987421 13467888999999999873
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccC--C--CCCCC---Cccee
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQ--K--FDLPA---PFVLH 166 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~--~--~~~~~---~~~~~ 166 (447)
+.++++|++||++|++.|+++++.+ .++++||+++++|||++..++...+...... + .+.+. .....
T Consensus 111 ~~~~v~~~~sgseA~~~al~~ar~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~ 184 (434)
T 2epj_A 111 RGGMIRFVNSGTEATMTAIRLARGY------TGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLV 184 (434)
T ss_dssp TTCEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHh------hCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEe
Confidence 5789999999999999999997655 2457899999999999887765544321100 0 01100 01111
Q ss_pred cCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehh
Q 013204 167 TDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEV 246 (447)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv 246 (447)
+++. ++++|++.+.... +++++|++||+++++|.++++++|+++|+++|++||++||+||+
T Consensus 185 ~~~~------------------d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv 245 (434)
T 2epj_A 185 TPYN------------------DVEALERVFAEYG-DRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEV 245 (434)
T ss_dssp EETT------------------CHHHHHHHHHHHG-GGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEET
T ss_pred cCCC------------------CHHHHHHHHHhCC-CCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcc
Confidence 1111 2477888876432 47899999999999999999999999999999999999999999
Q ss_pred hcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHH
Q 013204 247 ICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK 326 (447)
Q Consensus 247 ~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~ 326 (447)
|+|| ++|..++++.+++.||++++||++++| +|+|++++++++++.+... +...+.+|+++++++++++.++|+
T Consensus 246 ~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G-~~~G~v~~~~~~~~~l~~~----~~~~~~~t~~~~~~~~aa~~a~l~ 319 (434)
T 2epj_A 246 VTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLTPQ----GKVFNAGTFNAHPITMAAGLATLK 319 (434)
T ss_dssp TTTT-TSSTTHHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTBTTT----SSBCCCCTTTTCHHHHHHHHHHHH
T ss_pred hhce-eCCcchhhHHhCCCCCeeeecchhcCC-cceeeeeecHHHHHhhccC----CCcccCCCCCcCHHHHHHHHHHHH
Confidence 9999 778777778889999999999999997 8999999999998877531 123456789999999999999999
Q ss_pred HHhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCC--CCCCCcchHHHHHHHHHHcCceEE
Q 013204 327 IYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNE--PFPPEWGIGAYFGAQCEKHGMLVR 403 (447)
Q Consensus 327 ~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gi~~~ 403 (447)
.++++++.++++++++++++.|+++ .++++...+++.|.++++.+........ ...........+.+.|+++||++.
T Consensus 320 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~ 399 (434)
T 2epj_A 320 ALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIA 399 (434)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEe
Confidence 8877889999999999999999886 3345555678889999998864210000 000000124568888999999998
Q ss_pred eeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 404 VSGDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 404 ~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+++.. |+.+++.+|++++++++++|+++++++
T Consensus 400 ~~~~~-~~~~~~~~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 400 PSNLE-AVFTGLPHQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp SSTTS-CEECCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred ccCCC-cEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 87532 445568999999999999999998765
No 32
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=100.00 E-value=1.5e-48 Score=384.20 Aligned_cols=382 Identities=29% Similarity=0.496 Sum_probs=318.2
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++.+++|++++|.||++|+||+++++.+++||+||++.+++.+++.+..... ...+.+...++++++++.+
T Consensus 19 ~~~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~la~~~-- 94 (406)
T 4adb_A 19 APAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTG--NGYTNEPVLRLAKKLIDAT-- 94 (406)
T ss_dssp CCCSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCC--TTSCCHHHHHHHHHHHHHS--
T ss_pred CCCCceEEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccccc--CCcCCHHHHHHHHHHHhhC--
Confidence 456899999999999999999999999999999999999999999999998753322 2346778899999999996
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
+.++++|++||++|++.|+++++.+...++.+++++||+.+++||++...+...++.+.+...+......+..+++++
T Consensus 95 -~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d- 172 (406)
T 4adb_A 95 -FADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYND- 172 (406)
T ss_dssp -SCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTC-
T ss_pred -CCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCc-
Confidence 456999999999999999998877655556566789999999999998888887776665544443333333444322
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
+++|++.+. +++++|+++|++++||.++++.+++++|.++|++||+++|+||+|+||++
T Consensus 173 -----------------~~~l~~~l~----~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~ 231 (406)
T 4adb_A 173 -----------------INSASALID----DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGR 231 (406)
T ss_dssp -----------------HHHHHTTCS----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred -----------------HHHHHHHhc----CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 366776654 46889999999999998888999999999999999999999999999999
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN 332 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~ 332 (447)
.|..++.+.+++.+|+++|||.+++| +|+|++++++++++.+. ...+..+++.++++++++.++++.++.++
T Consensus 232 ~g~~~~~~~~~~~~d~~t~sK~~~~G-~r~G~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 303 (406)
T 4adb_A 232 TGELYAYMHYGVTPDLLTTAKALGGG-FPVGALLATEECARVMT-------VGTHGTTYGGNPLASAVAGKVLELINTPE 303 (406)
T ss_dssp TSSSSHHHHHTCCCSEEEECGGGGTT-SCCEEEEECHHHHHTCC-------TTSSCCSSTTCHHHHHHHHHHHHHHSSHH
T ss_pred cchhHHHHhcCCCCCEEEechhhcCC-CCeEEEEEcHHHHhhhc-------cCCcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 99887777888999999999999976 89999999999988775 23456788899999999999999887777
Q ss_pred HHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEE
Q 013204 333 IVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIM 410 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR 410 (447)
+.++++++++++++.|+++ ..++....+++.|.++.+.+...... ....+.+.|+++||++.+++ +.+|
T Consensus 304 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~~~~~~iR 374 (406)
T 4adb_A 304 MLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAG---------QAKQISQEAAKAGVMVLIAGGNVVR 374 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTTT---------CHHHHHHHHHHTTEECEESSTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcHH---------HHHHHHHHHHHCCcEEeecCCCeEE
Confidence 8899999999999999887 34466667788899989888653210 14568899999999999876 6799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
++|++.++++++++++++|+++++++++
T Consensus 375 i~~~~~~~~e~i~~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 375 FAPALNVSEEEVTTGLDRFAAACEHFVS 402 (406)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999987654
No 33
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=1.4e-48 Score=386.62 Aligned_cols=381 Identities=24% Similarity=0.362 Sum_probs=296.9
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++.+++|+++||.||++|+||+++.|++++||+||+|.+++.++++++.. .+++.+...+++++++++++
T Consensus 33 ~~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~-- 106 (424)
T 2e7u_A 33 GTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGLT----FGAPSPLEVALAKKVKRAYP-- 106 (424)
T ss_dssp SCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSC----CSSCCHHHHHHHHHHHHHCT--
T ss_pred CCCeeEEeeecCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCC----CCCCCHHHHHHHHHHHHhCC--
Confidence 358999999999999999999999999999999999999999999999987421 13467888999999999973
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc--CC--CCCCC---Cccee
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH--QK--FDLPA---PFVLH 166 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~--~~--~~~~~---~~~~~ 166 (447)
+.++++|++||++|++.|+++++.+ +++++||+++++|||++..++...+..... .+ .+.+. .....
T Consensus 107 ~~~~v~~~~~g~ea~~~al~~ar~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~ 180 (424)
T 2e7u_A 107 FVDLVRFVNSGTEATMSALRLARGY------TGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLV 180 (424)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHh------hCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEe
Confidence 6789999999999999999987655 345789999999999987776554331110 00 01100 01111
Q ss_pred cCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehh
Q 013204 167 TDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEV 246 (447)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv 246 (447)
+++. ++++|++.+... ++++++|++||+++++|.++++++|+++|+++ ++||++||+||+
T Consensus 181 ~~~~------------------d~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv 240 (424)
T 2e7u_A 181 LEYN------------------DPEGLREVLKRR-GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEV 240 (424)
T ss_dssp ECTT------------------CHHHHHHHHHHH-GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECT
T ss_pred CCCC------------------CHHHHHHHHHhC-CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecC
Confidence 2211 247788877643 24689999999999999899999999999999 999999999999
Q ss_pred hcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHH
Q 013204 247 ICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK 326 (447)
Q Consensus 247 ~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~ 326 (447)
|+|| +.|..++.+++++.||++++||++++| +|+|++++++++++.+... +...+.+|+++++++++++.++|+
T Consensus 241 ~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G-~~~G~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~aaa~aal~ 314 (424)
T 2e7u_A 241 MTGF-RLAFGGATELLGLKPDLVTLGKILGGG-LPAAAYAGRREIMEKVAPL----GPVYQAGTLSGNPLAMAAGLATLE 314 (424)
T ss_dssp TTTT-TSSTTHHHHHHTCCCSEEEECGGGGTT-SSCEEEEECHHHHTTBTTT----SSBCCCCTTCSCHHHHHHHHHHHH
T ss_pred cccc-ccchhHHHHHhCCCcchhhhhhhhhCC-cceEEEEEcHHHHhhhccc----CCcccCCCCCCCHHHHHHHHHHHH
Confidence 9999 888777777889999999999999987 8999999999999887531 123466789999999999999999
Q ss_pred HHhh-hcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCC--CCCCCcchHHHHHHHHHHcCceE
Q 013204 327 IYKE-RNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNE--PFPPEWGIGAYFGAQCEKHGMLV 402 (447)
Q Consensus 327 ~~~~-~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gi~~ 402 (447)
.+++ +++.++++++++++++.|+++ ..++....+++.|.++++++........ ...........+.+.|+++||++
T Consensus 315 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v 394 (424)
T 2e7u_A 315 LLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYW 394 (424)
T ss_dssp HHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEEC
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEE
Confidence 8877 788999999999999999887 3345555678889999988764210000 00000112456888899999999
Q ss_pred EeeCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 403 RVSGDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 403 ~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
.+++.. |+.+++.+|+++|++++++|++++
T Consensus 395 ~~~~~~-~~~~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 395 PPSNFE-AAFLSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp CSSSSS-CEECCTTCCHHHHHHHHHHHHHHC
T ss_pred eccCCC-ceEeeccCCHHHHHHHHHHHHHhC
Confidence 887532 344568999999999999998763
No 34
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=7.1e-48 Score=377.60 Aligned_cols=373 Identities=28% Similarity=0.494 Sum_probs=310.1
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++++++|++++|.||++|+||+++++..+|||+||++.+++.+++++....+. .++.+...++++++++.+
T Consensus 16 ~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~-- 91 (392)
T 3ruy_A 16 HPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSR--AFHSDQLGPWYEKVAKLT-- 91 (392)
T ss_dssp CCCSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCT--TSEETTHHHHHHHHHHHH--
T ss_pred CCCCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhcccccc--ccCCHHHHHHHHHHHHhc--
Confidence 4578999999999999999999999999999999999999999999999987544322 235677889999999987
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHH-HhcC-CCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYN-NALG-RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~-~~~~-~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
+.++++|++||++|++.|+++++... ...| .+++++||+.+++|||.+..++..++.+.+...+.........+++.
T Consensus 92 -g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (392)
T 3ruy_A 92 -NKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG 170 (392)
T ss_dssp -TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT
T ss_pred -CCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc
Confidence 37799999999999999999876541 1222 23457999999999999988888777666555444333333333321
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 171 HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
++++|++.+. +++++|+++++++++|.+.++.+++++|.++|++||+++|+||+|+||
T Consensus 171 ------------------d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~ 228 (392)
T 3ruy_A 171 ------------------DLEALKAAIT----PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGL 228 (392)
T ss_dssp ------------------CHHHHHHHCC----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT
T ss_pred ------------------cHHHHHHHhc----cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCC
Confidence 1477777765 478999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
++.|..+..+.+++.||++++||+++||++|+|++++++++++.+. ...+..+++.++++++++.++++.++.
T Consensus 229 ~~~g~~~~~~~~~~~~d~~~~SK~l~gG~~~~G~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~a~~~~l~~~~~ 301 (392)
T 3ruy_A 229 GRTGKVFACDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFE-------PGSHGSTFGGNPLACAVSIAALEVLEE 301 (392)
T ss_dssp TTTSSSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEECHHHHTTCC-------TTSSCCSSTTCHHHHHHHHHHHHHHHH
T ss_pred CccccchhhhccCCCCCEEEEchhhhCChhhhEEEEECHHHHhhhc-------cCCcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999888888889999999999999997679999999999887775 334567889999999999999998877
Q ss_pred hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEE
Q 013204 331 RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNI 409 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~i 409 (447)
+++.++++++.+++++.|+++ ..+.+...++.|.++.+.+.. . ...+.+.|+++||++.+++ +.+
T Consensus 302 ~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~g~~~~~~~~~-~------------~~~l~~~l~~~gi~v~~~~~~~i 367 (392)
T 3ruy_A 302 EKLTERSLQLGEKLVGQLKEI-DNPMITEVRGKGLFIGIELNE-P------------ARPYCEQLKAAGLLCKETHENVI 367 (392)
T ss_dssp TTHHHHHHHHHHHHHHHHTTC-CCTTEEEEEEETTEEEEEESS-C------------SHHHHHHHHTTTEECCCBTTTEE
T ss_pred hhHHHHHHHHHHHHHHHHHHh-cCCCceEEEeeeeEEEEEEcc-h------------HHHHHHHHHHCCcEEecCCCCEE
Confidence 788899999999999999887 336677778889988888754 1 3458889999999999886 679
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
|++|++.+|++++++++++|++++
T Consensus 368 Ri~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 368 RIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999876
No 35
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=100.00 E-value=1.6e-47 Score=382.19 Aligned_cols=385 Identities=23% Similarity=0.312 Sum_probs=283.2
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++.+++|+++||.||++|+||+++++++++||+||+|.+++.+++++... .+.+.+...++++++++.++
T Consensus 38 ~~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~----~~~~~~~~~~la~~l~~~~~-- 111 (453)
T 2cy8_A 38 PHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQ----YAASHPLEVRWAERIVAAFP-- 111 (453)
T ss_dssp SCCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTCS----SCSSCHHHHHHHHHHHHHCT--
T ss_pred CCCceEEEeecCEEEECCCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCCC----CCCCCHHHHHHHHHHHhhCC--
Confidence 469999999999999999999999999999999999999999999999977422 13477888999999998863
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc-CC-CCCCC---CcceecC
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH-QK-FDLPA---PFVLHTD 168 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~-~~-~~~~~---~~~~~~~ 168 (447)
+.++++|++||++|++.|+++++.+ .++++||+++++|||++...+...+.. +. .. .+.+. .....++
T Consensus 112 ~~~~v~~~~gg~eA~~~al~~ar~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~ 184 (453)
T 2cy8_A 112 SIRKLRFTGSGTETTLLALRVARAF------TGRRMILRFEGHYHGWHDFSASGYNSH-FDGQPAPGVLPETTANTLLIR 184 (453)
T ss_dssp TCSEEEEESCHHHHHHHHHHHHHHH------HCCCEEEEECC-----------------------------CGGGEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHh------hCCCEEEEEcCCcCCCchhhHhhcCCc-cCCCcCCCCCccccCceeecC
Confidence 6789999999999999999997654 234689999999999987666544320 00 00 01110 0111112
Q ss_pred CCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc
Q 013204 169 CPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC 248 (447)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~ 248 (447)
+. ++++|++.+.... +++++|++||+++++|.++++++++++|+++|++||++||+||+|+
T Consensus 185 ~~------------------d~~~le~~l~~~~-~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~ 245 (453)
T 2cy8_A 185 PD------------------DIEGMREVFANHG-SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS 245 (453)
T ss_dssp TT------------------CHHHHHHHHHHHG-GGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred CC------------------CHHHHHHHHHhcC-CCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc
Confidence 11 2477888876432 4689999999988888889999999999999999999999999999
Q ss_pred CCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH-
Q 013204 249 AFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI- 327 (447)
Q Consensus 249 g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~- 327 (447)
|| +.|..++++.+++.||++++||++++| +|+|++++++++++.+... ..+...+.+|++++|++++++.++|+.
T Consensus 246 g~-~~g~~~~~~~~~~~~di~s~sK~l~~G-~~~G~v~~~~~~~~~l~~~--~~~~~~~~~t~~~n~~~~aa~~aal~~~ 321 (453)
T 2cy8_A 246 GF-RVGNHGMQALLDVQPDLTCLAKASAGG-LPGGILGGREDVMGVLSRG--SDRKVLHQGTFTGNPITAAAAIAAIDTI 321 (453)
T ss_dssp TT-TTCTTHHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTSSSC--C---------CCCCHHHHHHHHHHHHHH
T ss_pred cc-ccCchhhhHHhCCCCcEEEEChhhhCC-cceEEEechHHHHHHhccc--cCCCceeCCCCCCCHHHHHHHHHHHHHH
Confidence 99 888777777888999999999999987 8999999999998877531 001223567889999999999999998
Q ss_pred HhhhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeec-----CC---CCCCCCCCCcchHHHHHHHHHHc
Q 013204 328 YKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFAD-----NK---SPNEPFPPEWGIGAYFGAQCEKH 398 (447)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~-----~~---~~~~~~~~~~~~~~~~~~~l~~~ 398 (447)
+ .+++.++++++++++++.|+++ ..++....+++.|.++++.+.. .. .....-.........+.+.|+++
T Consensus 322 ~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 400 (453)
T 2cy8_A 322 L-EDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILE 400 (453)
T ss_dssp H-HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHT
T ss_pred h-hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHC
Confidence 7 6788899999999999999887 3456555678889999998864 10 00000000001245688889999
Q ss_pred CceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 399 GMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 399 Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
||++.+.+ .+| +++.+++++|++++++|+++++++++
T Consensus 401 Gv~v~~~~-~~~--l~~~~t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 401 GVDIGGRG-SVF--LSAQHEREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp TEECBTTT-EEE--CCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEeCCC-CEE--eeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 99996543 455 45899999999999999999988754
No 36
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=100.00 E-value=9.9e-46 Score=366.36 Aligned_cols=396 Identities=27% Similarity=0.495 Sum_probs=306.5
Q ss_pred CCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCC
Q 013204 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASK 94 (447)
Q Consensus 15 ~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 94 (447)
+|+++.+++|+++||.||++|+||+++.++.++||.+|++++++.+++++....+ ....+.+...++++++++++....
T Consensus 23 ~~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~l~~~la~~~~~~~ 101 (426)
T 1sff_A 23 HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTC-FQVLAYEPYLELCEIMNQKVPGDF 101 (426)
T ss_dssp EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCC-TTTEECHHHHHHHHHHHHHSSCSS
T ss_pred CCceEEecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCcc-ccccCCHHHHHHHHHHHHhCCccc
Confidence 5889999999999999999999999999888999999999999999987643221 113457788999999999983222
Q ss_pred CCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc-cccCCCCCCCCcceecCCCCcc
Q 013204 95 MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 95 ~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
+++++|++||++|++.++++++... ++.+|++++++||+....++...+.. .++..+......+..++++..+
T Consensus 102 ~~~v~~~~g~~~a~~~~~~~a~~~~------~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~ 175 (426)
T 1sff_A 102 AKKTLLVTTGSEAVENAVKIARAAT------KRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPL 175 (426)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHH------TCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGG
T ss_pred ccEEEEeCchHHHHHHHHHHHHHhh------CCCeEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccc
Confidence 3799999999999999999765432 23489999999999987666555432 2333333222223344443211
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhh-CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKE-GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~-~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
+ +. ....++++|++.+... .++++++|+++|+++++|.+.++++++++|.++|++||++||+||+|+||++
T Consensus 176 ~----~~----~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~ 247 (426)
T 1sff_A 176 H----GI----SEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGR 247 (426)
T ss_dssp G----TB----CHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred c----cc----chHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCc
Confidence 0 00 0123467888877642 1246889999999877888999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN 332 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~ 332 (447)
.|..++++.+++.||+++|||++++| +|+|++++++++++.+.. ..+..+++.++++++++.++|+.+++++
T Consensus 248 ~g~~~~~~~~~~~~di~s~sK~~~~G-lriG~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~a~~aal~~~~~~~ 319 (426)
T 1sff_A 248 TGTLFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAP-------GGLGGTYAGNPIACVAALEVLKVFEQEN 319 (426)
T ss_dssp TSSSSGGGGTTSCCSEEEECGGGGTS-SCCEEEEEEHHHHTTSCT-------TSBCCSSSSCHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhhhhcCCCCCEEEEcccccCC-CceEEEEEcHHHHhhhcc-------CCcCcCCCCCHHHHHHHHHHHHHHHhcC
Confidence 88777777788889999999999986 899999999998877642 2345688889999999999999887778
Q ss_pred HHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---CE
Q 013204 333 IVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---DN 408 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~~ 408 (447)
+.++++++++++++.|+++ ...+.+..+++.|.++.+++........+ .......+.+.|+++||++.+++ +.
T Consensus 320 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~gi~v~~~~~~~~~ 396 (426)
T 1sff_A 320 LLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKP---DAKLTAEIVARARDKGLILLSCGPYYNV 396 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSB---CHHHHHHHHHHHHHTTEECEEESTTSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCC---ChHHHHHHHHHHHHCCcEEecCCCCCCE
Confidence 8899999999999999887 34566666778899999888542110000 00124568888999999999875 67
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+|+++++.+++++|++++++|+++++++
T Consensus 397 iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 397 LRILVPLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998765
No 37
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=100.00 E-value=7.4e-45 Score=356.78 Aligned_cols=375 Identities=28% Similarity=0.540 Sum_probs=296.1
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++.+++|+++||.||++|+||+++++.+++||.+|++.+++.+++++....+. ..+.+...++++++++++
T Consensus 20 ~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~-- 95 (397)
T 2ord_A 20 SRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSN--LFWNRPQMELAELLSKNT-- 95 (397)
T ss_dssp CCCSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCT--TSEEHHHHHHHHHHHHTT--
T ss_pred cCCCceEEeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCcc--ccCCHHHHHHHHHHHHhc--
Confidence 4578999999999999999999999999999999999999999999999987543221 224577889999999986
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
+.++++|++||++|++.|+++++.+... +.+++++||+++++||+....++...+...+..++.+....+..+++.
T Consensus 96 -g~~~v~~~~gg~~a~~~al~~~~~~~~~-~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-- 171 (397)
T 2ord_A 96 -FGGKVFFANTGTEANEAAIKIARKYGKK-KSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFN-- 171 (397)
T ss_dssp -TSCEEEEESSHHHHHHHHHHHHHHHHHH-HCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTT--
T ss_pred -CCCeEEEeCCHHHHHHHHHHHHHHHhhc-CCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCC--
Confidence 4679999999999999999987643221 123456799999999998776555555432222222211222233321
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
++++|++.+. +++++|+++++++.+|.++++.+++++|.++|++||+++|+||+|+|+++
T Consensus 172 ----------------d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~ 231 (397)
T 2ord_A 172 ----------------NVEDLRRKMS----EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGR 231 (397)
T ss_dssp ----------------CHHHHHHHCC----TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred ----------------CHHHHHHHhh----cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCcc
Confidence 1477777664 36899999999999998688899999999999999999999999999988
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN 332 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~ 332 (447)
.|..+....+++.||+++|||.+++| +|+|+++++++++ .+. ...+..+++.++++++++.++|+.+.+++
T Consensus 232 ~g~~~~~~~~~~~~d~~s~sK~~~~G-~r~G~~~~~~~~~-~l~-------~~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 302 (397)
T 2ord_A 232 TGKLFAYQKYGVVPDVLTTAKGLGGG-VPIGAVIVNERAN-VLE-------PGDHGTTFGGNPLACRAGVTVIKELTKEG 302 (397)
T ss_dssp TSSSSHHHHHTCCCSEEEECGGGGTT-SCCEEEEECSTTC-CCC-------TTSSCCSSTTCHHHHHHHHHHHHHHTSTT
T ss_pred CccchhhhhhCCCCCeeeeccccCCC-cCeEEEEEchHhc-ccC-------CCCcCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 88765556667779999999999977 7999999998876 543 11345678889999999999999877777
Q ss_pred HHHHHHHHHHHHHHhHhhcc-CCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEE
Q 013204 333 IVEQVNKIAPKFQDGVKAFS-DSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIM 410 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l~-~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR 410 (447)
+.++++++++++++.|+++. +.+.+..+++.|.++.+.+.... ....+.+.|+++||++.+++ +.+|
T Consensus 303 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~~l~~~l~~~gi~v~~~~~~~iR 371 (397)
T 2ord_A 303 FLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEV-----------SNREVATKCFENKLLVVPAGNNTIR 371 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTS-----------CHHHHHHHHHHTTEECEEETTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEEEEEEECChH-----------HHHHHHHHHHHCCCEEccCCCCEEE
Confidence 88999999999999998862 45665566778888888875421 14568889999999999885 6799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
++|++.++++++++++++|++++++
T Consensus 372 is~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 372 FLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EECCcCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988753
No 38
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=100.00 E-value=1.1e-42 Score=341.05 Aligned_cols=368 Identities=28% Similarity=0.501 Sum_probs=290.0
Q ss_pred CCCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc
Q 013204 13 DVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 13 ~~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
..+|+++.+++|+++||.+|+.|+||+++.+++++||.+|++.+++.+++++....+. ..+.+...++++++++++.
T Consensus 25 ~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~~- 101 (395)
T 1vef_A 25 NKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQ--TLPTPMRGEFYRTLTAILP- 101 (395)
T ss_dssp CCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCT--TSCCHHHHHHHHHHHHTSC-
T ss_pred CCCCccEEecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHHHHHhcC-
Confidence 3578899999999999999999999999998899999999999999999976543221 2256788899999999863
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
.+.+++++++||++|++.+++.++.+. ++++||++++.||+.........+.......+.........++..
T Consensus 102 ~~~~~v~~~~gg~~a~~~al~~~~~~~------~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-- 173 (395)
T 1vef_A 102 PELNRVFPVNSGTEANEAALKFARAHT------GRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYN-- 173 (395)
T ss_dssp TTEEEEEEESSHHHHHHHHHHHHHHHH------SCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTT--
T ss_pred CCcCEEEEcCcHHHHHHHHHHHHHHHh------CCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCC--
Confidence 366799999999999999999764331 246799999999998766655554432211111111111112211
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~ 252 (447)
++++|++.+. +++++|+++|+++++|.+.++.+++++|.++|++||+++|+||+|+|+++
T Consensus 174 ----------------d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~ 233 (395)
T 1vef_A 174 ----------------DVEALKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGR 233 (395)
T ss_dssp ----------------CHHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred ----------------cHHHHHHHhc----cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCcc
Confidence 1477777664 35789999999888898889999999999999999999999999999988
Q ss_pred cccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhc
Q 013204 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN 332 (447)
Q Consensus 253 ~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~ 332 (447)
.|..+.++..++.+|+++|||.+++| +|+|++++++++++.+.. ..+..+++.++++++++.++++.+.+++
T Consensus 234 ~g~~~~~~~~~~~~d~~s~sK~~~~g-~~~G~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~a~~~al~~~~~~~ 305 (395)
T 1vef_A 234 TGKRFAFEHFGIVPDILTLAKALGGG-VPLGVAVMREEVARSMPK-------GGHGTTFGGNPLAMAAGVAAIRYLERTR 305 (395)
T ss_dssp TSSSSTHHHHTCCCSEEEECGGGGTT-SSCEEEEEEHHHHHTSCT-------TSSCCSSTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCchhHhhhcCCCCCEEEEcccccCC-CceEEEEehHHHHhhhcc-------CCcCCCcCCCHHHHHHHHHHHHHHHhCC
Confidence 88766566677889999999999987 899999999988777642 1244678889999999999999877667
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC-CEEE
Q 013204 333 IVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG-DNIM 410 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g-~~iR 410 (447)
+.++++++++++++.|+++. .+.+...++.|.++.+.+... ...+.+.|+ ++||.+.+++ +.+|
T Consensus 306 ~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~~~~~-------------~~~l~~~l~~~~gi~v~~~~~~~iR 371 (395)
T 1vef_A 306 LWERAAELGPWFMEKLRAIP-SPKIREVRGMGLMVGLELKEK-------------AAPYIARLEKEHRVLALQAGPTVIR 371 (395)
T ss_dssp THHHHHHHHHHHHHHHHTSC-CTTEEEEEEETTEEEEEESSC-------------SHHHHHHHHHHHCEECEESSTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHhh-cCceEEEEEEEEEEEEEEcCh-------------HHHHHHHHHHHCCeEEecCCCCEEE
Confidence 78899999999999998873 244445667788888877531 235778888 9999999875 6799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
+++++.++++++++++++|++++
T Consensus 372 i~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 372 FLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998875
No 39
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=7.5e-41 Score=325.63 Aligned_cols=366 Identities=30% Similarity=0.532 Sum_probs=283.0
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS 93 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (447)
.+|+++.+++|++++|.+|+.|+||+++...+++||.+|++.+++.+++++...... ..+.....++++++++++. .
T Consensus 9 ~~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~--~y~~~~~~~l~~~la~~~g-~ 85 (375)
T 2eh6_A 9 RLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSN--LYENPWQEELAHKLVKHFW-T 85 (375)
T ss_dssp CEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCT--TBCCHHHHHHHHHHHHTSS-S
T ss_pred CCCccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCc--ccCCHHHHHHHHHHHhhcC-C
Confidence 478899999999999999999999999988789999999999999999876422111 2245677889999999873 2
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
++++++++||++|++.++++++.... .+++++++|++.+++||++........+...+...+......+..+++.+
T Consensus 86 -~~~v~~~~g~t~a~~~~~~~~~~~~~-~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-- 161 (375)
T 2eh6_A 86 -EGKVFFANSGTESVEAAIKLARKYWR-DKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLND-- 161 (375)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHHHH-HTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTC--
T ss_pred -CCeEEEeCchHHHHHHHHHHHHHHhc-cCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCch--
Confidence 27999999999999999987543321 12345588999999999997766665554432222211111222222211
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
+++|++.+. +++++|+++|+++.+|.+.++.+++++|.++|++||+++|+||+|++|++.
T Consensus 162 ----------------~~~l~~~l~----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~ 221 (375)
T 2eh6_A 162 ----------------IDSVYKLLD----EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRT 221 (375)
T ss_dssp ----------------HHHHHTTCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred ----------------HHHHHHHhc----CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC
Confidence 366666554 368899999999999988899999999999999999999999999999888
Q ss_pred ccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcH
Q 013204 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI 333 (447)
Q Consensus 254 g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~ 333 (447)
+..+..+.++..+|++++||.+++| +++|++++++++++.+.. ..+..+++.++++++++.++|+.++ +.
T Consensus 222 ~~~~~~~~~~~~~d~~s~SK~~~~g-~~~G~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~--~~ 291 (375)
T 2eh6_A 222 GEFYAYQHFNLKPDVIALAKGLGGG-VPIGAILAREEVAQSFTP-------GSHGSTFGGNPLACRAGTVVVDEVE--KL 291 (375)
T ss_dssp SSSSGGGGGTCCCSEEEECGGGGTT-SCCEEEEEEHHHHTTCCT-------TSCCCSSTTCHHHHHHHHHHHHHHH--HH
T ss_pred CcchhhhhcCCCCCEEEEcccccCC-CCeEEEEEcHHHHhhhcC-------CCCCCCCCCCHHHHHHHHHHHHHHH--HH
Confidence 7655566677789999999999987 899999999988777642 1244577788999999988888765 67
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEEe
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMMS 412 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~~ 412 (447)
.++++++++++++.|+++.. ..+++.|.++.+.+..+ ...+.+.|+++||.+.+++ +.+|++
T Consensus 292 ~~~~~~~~~~l~~~L~~~~~----~~~~~~g~~~~~~~~~~-------------~~~~~~~l~~~gi~~~~~~~~~iRi~ 354 (375)
T 2eh6_A 292 LPHVREVGNYFKEKLKELGK----GKVKGRGLMLGLELERE-------------CKDYVLKALEKGLLINCTAGKVLRFL 354 (375)
T ss_dssp HHHHHHHHHHHHHHHHHTTS----SEEEEETTEEEEECSSC-------------CHHHHHHHHHTTEECEEETTTEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhc----CCceEEEEEEEEEEcCc-------------HHHHHHHHHHCCCEEecCCCCEEEEE
Confidence 78888899999999987622 23456778888877531 2357888899999999874 679999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 013204 413 PPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 413 ~~~~~t~e~i~~~~~~l~~~l 433 (447)
+++.++++++++++++|++++
T Consensus 355 ~~~~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 355 PPLIIQKEHIDRAISVLREIL 375 (375)
T ss_dssp CCTTCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHhC
Confidence 999999999999999998753
No 40
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=5.2e-34 Score=282.22 Aligned_cols=350 Identities=16% Similarity=0.159 Sum_probs=257.1
Q ss_pred CeEEE-EecCcEEEeCCCCEEEecCCccccccCC-CCCHHHHHHHHHHHhcCCc---ccccCcCCChHHHHHHHHHHHhc
Q 013204 16 PLVIE-KSEGSYVYDVNGKKYLDSLAGLWCTALG-GSEPRLVAAATAQLNTLPF---YHSFWNRTTKPSLDLAKELLEMF 90 (447)
Q Consensus 16 ~~~~~-~~~g~~~~d~dg~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~ 90 (447)
+.++. +++|++++| ||++|+||+++ .++| +.||++.+++.+++.+... .+....+..+...++++++++++
T Consensus 47 ~~~~~~~~~g~~~~~-~g~~~id~~~~---~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~ 122 (427)
T 2w8t_A 47 AIVMEQVKSPTEAVI-RGKDTILLGTY---NYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFY 122 (427)
T ss_dssp CCCCSEEEETTEEEE-TTEEEEECSCC---CTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHH
T ss_pred eeeccccCCCceEee-CCceEEEEECc---ccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHh
Confidence 44667 999999999 99999999988 4688 6999999999999876321 12223346788899999999997
Q ss_pred CcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC
Q 013204 91 TASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 91 ~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
+.+++++++||++|+..+++.+. .+++.|++ +..+|+.....+...+.... .++.
T Consensus 123 ---g~~~~i~~~sGs~a~~~al~~l~--------~~gd~vl~-~~~~h~~~~~~~~~~g~~~~------------~~~~- 177 (427)
T 2w8t_A 123 ---GTTGAIVFSTGYMANLGIISTLA--------GKGEYVIL-DADSHASIYDGCQQGNAEIV------------RFRH- 177 (427)
T ss_dssp ---TCSEEEEESCHHHHHHHHHHHHS--------CTTCEEEE-ETTCCHHHHHHHHHSCSEEE------------EECT-
T ss_pred ---CCCceEEecCcHHHHHHHHHHhc--------CCCCEEEE-CCcccHHHHHHHHHcCCeeE------------EeCC-
Confidence 34578999999999999998763 22345555 55566765555444442211 1111
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 171 HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
.++++|++.+....+.++++|+++++++++|.+.+ +++|+++|++||+++|+||+|+++
T Consensus 178 -----------------~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~~~~ 236 (427)
T 2w8t_A 178 -----------------NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAHSMG 236 (427)
T ss_dssp -----------------TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTT
T ss_pred -----------------CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEECCcccc
Confidence 11478888887533226789999999999998876 999999999999999999999964
Q ss_pred --CccccccccccCCCCCC----eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHH
Q 013204 251 --GRLGTMFGCDKYSIKPD----LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEA 324 (447)
Q Consensus 251 --g~~g~~~~~~~~~~~~d----~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~ 324 (447)
++.|.. ..+.+++.+| +.++||+++ .+.|++++++++++.+.... ..+ ..+.+.+++.++++.++
T Consensus 237 ~~~~~g~~-~~~~~~~~~~~di~~~s~sK~~g---~~gG~v~~~~~l~~~l~~~~---~~~--~~~~~~~~~~~aa~~~a 307 (427)
T 2w8t_A 237 FFGPNGRG-VYEAQGLEGQIDFVVGTFSKSVG---TVGGFVVSNHPKFEAVRLAC---RPY--IFTASLPPSVVATATTS 307 (427)
T ss_dssp TSSTTSCC-HHHHTTCTTCCSEEEEESSSTTC---SCCEEEEECCTTGGGGGGTC---HHH--HSSCCCCHHHHHHHHHH
T ss_pred ccCCCCCc-hHhhcCCCcCCcEEEecchhhhc---cCCCEEEeCHHHHHHHHHhc---ccc--cccCCCCHHHHHHHHHH
Confidence 222322 3455666555 557899996 35599999999988876321 111 23567789999988899
Q ss_pred HHHHhh-hcHHHHHHHHHHHHHHhHhhccCCCceeeEee-eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceE
Q 013204 325 LKIYKE-RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG-TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLV 402 (447)
Q Consensus 325 l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~ 402 (447)
++.++. ++..++++++++++++.|+++ +.++. ..+ .|.++.+.+.+.. ....+.+.|+++||++
T Consensus 308 l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~Gi~v 373 (427)
T 2w8t_A 308 IRKLMTAHEKRERLWSNARALHGGLKAM-GFRLG--TETCDSAIVAVMLEDQE-----------QAAMMWQALLDGGLYV 373 (427)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHH-TCEES--CSSCCSSEEEEEESSHH-----------HHHHHHHHHHHTTEEC
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCccc--CCCCCCCEEEEEECCHH-----------HHHHHHHHHHHCCeEE
Confidence 998765 667889999999999999886 32221 123 5677777775311 2456889999999999
Q ss_pred EeeC--------CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 403 RVSG--------DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 403 ~~~g--------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.++. +.+|++++..+++++|++++++|+++++++.+
T Consensus 374 ~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~ 417 (427)
T 2w8t_A 374 NMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV 417 (427)
T ss_dssp EEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred eeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 8762 36999999999999999999999999887653
No 41
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=8.1e-35 Score=287.57 Aligned_cols=356 Identities=10% Similarity=0.033 Sum_probs=254.6
Q ss_pred CCeEEEEecCcEEEeCC--CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-
Q 013204 15 HPLVIEKSEGSYVYDVN--GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT- 91 (447)
Q Consensus 15 ~~~~~~~~~g~~~~d~d--g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~- 91 (447)
.+++..++.|+++||.+ |++||||..+. ..+ +.+|+|.+++.+++++....++. ...+...++++++.+.+.
T Consensus 41 ~~~~~~~g~g~~~~d~~~~g~~~i~~~~~~--~~~-~~~~~v~~a~~~~~~~~~~~y~~--~~~~l~~~l~~~l~~~~g~ 115 (421)
T 3l8a_A 41 TTRPDRLNQFTYKWKTSENNPELLQMWVAD--MDF-LPVPEIKEAIINYGREHIFGYNY--FNDDLYQAVIDWERKEHDY 115 (421)
T ss_dssp SCCCCCTTTTBTTTGGGTTCTTCEECCSSC--CCS-CCCHHHHHHHHHHHHHCCSSCBC--CCHHHHHHHHHHHHHHHCC
T ss_pred CcccccCCCCCccccccCCCCCeeecccCC--CCC-CCCHHHHHHHHHHHhcCCcCCCC--CCHHHHHHHHHHHHHHhCC
Confidence 35667789999999999 89999997662 334 48999999999999764333322 234556677777777653
Q ss_pred cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC-
Q 013204 92 ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP- 170 (447)
Q Consensus 92 ~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 170 (447)
..+.++++|++||++|++.|++.++ ..+++|++.+++||+........+.... .+++.
T Consensus 116 ~~~~~~v~~~~g~~ea~~~a~~~~~--------~~gd~Vi~~~~~y~~~~~~~~~~g~~~~-------------~~~~~~ 174 (421)
T 3l8a_A 116 AVVKEDILFIDGVVPAISIALQAFS--------EKGDAVLINSPVYYPFARTIRLNDHRLV-------------ENSLQI 174 (421)
T ss_dssp CCCGGGEEEESCHHHHHHHHHHHHS--------CTEEEEEEEESCCHHHHHHHHHTTEEEE-------------EEECEE
T ss_pred CCCHHHEEEcCCHHHHHHHHHHHhc--------CCCCEEEECCCCcHHHHHHHHHCCCEEE-------------eccccc
Confidence 1467799999999999999999874 3357899999999998765554332111 11110
Q ss_pred --CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc
Q 013204 171 --HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC 248 (447)
Q Consensus 171 --~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~ 248 (447)
..+. .++++|++.+.. +++++|+++++++++| ++++++++++|+++|++||++||+||+|+
T Consensus 175 ~~~~~~-------------~d~~~le~~i~~---~~~~~vil~~p~nptG-~~~~~~~l~~l~~l~~~~~~~li~De~~~ 237 (421)
T 3l8a_A 175 INGRFE-------------IDFEQLEKDIID---NNVKIYLLCSPHNPGG-RVWDNDDLIKIAELCKKHGVILVSDEIHQ 237 (421)
T ss_dssp ETTEEE-------------CCHHHHHHHHHH---TTEEEEEEESSBTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred cCCCee-------------eCHHHHHHHhhc---cCCeEEEECCCCCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEcccc
Confidence 0000 014788888763 3577888898898888 67788889999999999999999999999
Q ss_pred CCCcccccc-ccc-----cCCCCCCeeeecccCCCcccceeEEEeC-hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHH
Q 013204 249 AFGRLGTMF-GCD-----KYSIKPDLVSFAKALSSAYMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVA 321 (447)
Q Consensus 249 g~g~~g~~~-~~~-----~~~~~~d~v~~sK~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa 321 (447)
++++.|..+ .+. ..+..+++.++||+++.+++|+|+++++ +++++.+... .....++++++++++++
T Consensus 238 ~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~------~~~~~~~~~n~~~~~a~ 311 (421)
T 3l8a_A 238 DLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYR------QLANNQHEVPTVGMIAT 311 (421)
T ss_dssp TCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHH------HHHTTCSCCCHHHHHHH
T ss_pred ccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHH------HHhcccCCCCHHHHHHH
Confidence 998887532 111 1233455778899998433899999998 8888887642 11234567899999999
Q ss_pred HHHHHHHhh--hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEE-EEeecCCCCCCCCCCCcchHHHHHHHHHH-
Q 013204 322 IEALKIYKE--RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILG-TEFADNKSPNEPFPPEWGIGAYFGAQCEK- 397 (447)
Q Consensus 322 ~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 397 (447)
.++++..++ ++..++++++.+++++.|+++ +.+..+++.|.++. +++...... ...+.+.|++
T Consensus 312 ~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~i~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~l~~~ 378 (421)
T 3l8a_A 312 QAAFQYGKPWLEELKTVIEGNIKLVIKELEAK---TKIKVMEPEGTYLVWLDFSAYAIA----------QPQLSEKLQNE 378 (421)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH---CSCEEECCSBSSEEEEECGGGTCC----------TTHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHhC---CCceEeCCCeeEEEEEeccccCCC----------HHHHHHHHHHh
Confidence 999874321 345566777777777777765 44455666776655 777642111 2347788875
Q ss_pred cCceEEee-------CCEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 398 HGMLVRVS-------GDNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 398 ~Gi~~~~~-------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
.||++.++ .+.+|++++ +++++|++++++|+++++
T Consensus 379 ~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 379 AKVVLNDGAHFGKEGKYFARLNVA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp TCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred CCEEEECchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 59999874 267999966 799999999999998874
No 42
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=6.1e-32 Score=264.82 Aligned_cols=349 Identities=17% Similarity=0.251 Sum_probs=254.2
Q ss_pred CCeEEEEecCcEEEeCCCCEEEecCCccccccCC-CCCHHHHHHHHHHHhcCCcc---cccCcCCChHHHHHHHHHHHhc
Q 013204 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALG-GSEPRLVAAATAQLNTLPFY---HSFWNRTTKPSLDLAKELLEMF 90 (447)
Q Consensus 15 ~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~ 90 (447)
.+.++.+++|.+++| ||++|+||.++ +++| |.+|++.+++.+++.+.... +....+..+...++++++++++
T Consensus 26 ~~~~~~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~ 101 (399)
T 3tqx_A 26 SERIITSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFL 101 (399)
T ss_dssp CCCCBCSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHH
T ss_pred ccccccCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHH
Confidence 467789999999999 99999999988 7788 78999999999998764322 1122345677889999999987
Q ss_pred CcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC
Q 013204 91 TASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 91 ~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
. .++.+++++|++|+..+++.+. .+++.|++..+.| +.........+.... .++..
T Consensus 102 ~---~~~~i~~~sGt~a~~~~l~~~~--------~~gd~v~~~~~~~-~~~~~~~~~~g~~~~------------~~~~~ 157 (399)
T 3tqx_A 102 G---TDDTILYSSCFDANGGLFETLL--------GPEDAIISDELNH-ASIIDGIRLCKAQRY------------RYKNN 157 (399)
T ss_dssp T---CSEEEEESCHHHHHHTTHHHHC--------CTTCEEEEETTCC-HHHHHHHHSCCSEEE------------EECTT
T ss_pred C---CCcEEEECchHHHHHHHHHHhc--------CCCCEEEECCccc-HHHHHHHHHcCCcee------------EeCCC
Confidence 3 3467778889999999998763 2345666655544 554444443433211 11111
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHhhCC--CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc
Q 013204 171 HYWRYAHPGETEEEYSTRLANNLEDLILKEGP--ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC 248 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~--~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~ 248 (447)
+ +++|++.+..... .++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|.
T Consensus 158 d------------------~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~ 215 (399)
T 3tqx_A 158 A------------------MGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHA 215 (399)
T ss_dssp C------------------TTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTT
T ss_pred C------------------HHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCcc
Confidence 1 2667777765322 26789999999999998876 9999999999999999999995
Q ss_pred -CC-CccccccccccCCC--CCCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHH
Q 013204 249 -AF-GRLGTMFGCDKYSI--KPDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAI 322 (447)
Q Consensus 249 -g~-g~~g~~~~~~~~~~--~~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~ 322 (447)
|+ +..+. ...+.+++ .+|++ ++||.++ | ++.|++++++++++.+.... .. ...+.+.++++++++.
T Consensus 216 ~~~~~~~~~-~~~~~~~~~~~~di~~~s~sK~~~-g-~~gG~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~ 287 (399)
T 3tqx_A 216 VGFIGENGR-GTPEYCGVADRVDILTGTLGKALG-G-ASGGYTSGHKEIIEWLRNRS---RP--YLFSNTVAPVIVATSL 287 (399)
T ss_dssp TTTSSTTSC-CHHHHHTCTTCCSEEEEESSSSSC-S-SCCEEEEECHHHHHHHHHHC---HH--HHSSCCCCHHHHHHHH
T ss_pred ccccCCCCC-chHHhhCCCCCCcEEEecchHhcc-c-CceEEEEcCHHHHHHHHHhC---cc--eeccCCCcHHHHHHHH
Confidence 43 33332 23455565 68888 7899998 4 57799999999988886421 01 1124467888999999
Q ss_pred HHHHHH-h-hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 323 EALKIY-K-ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 323 a~l~~~-~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
++++.. + .++..++++++.+++++.|+++ +..+. .+.|.++.+.+.... ....+.+.|+++||
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~---~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi 352 (399)
T 3tqx_A 288 KVLELLKTEGPQLRKQLQENSRYFRAGMEKL-GFQLV---PGNHPIIPVMLGDAQ-----------LATNMADHLLQEGI 352 (399)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-TCCBC---CCSSSEEEEEEECHH-----------HHHHHHHHHHHTTE
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHc-CCCcC---CCCCCEEEEEeCCHH-----------HHHHHHHHHHHCCC
Confidence 999876 3 3567788899999999999887 33322 556777777775421 24568899999999
Q ss_pred eEEeeC--------CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 401 LVRVSG--------DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 401 ~~~~~g--------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
++.+.. +.+|++++..++++++++++++|+++++++
T Consensus 353 ~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 353 YVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp ECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred EEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence 988542 369999998999999999999999998764
No 43
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=4.7e-32 Score=265.97 Aligned_cols=351 Identities=19% Similarity=0.234 Sum_probs=252.5
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCCccc---ccCcCCChHHHHHHHHHHHh
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPFYH---SFWNRTTKPSLDLAKELLEM 89 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~ 89 (447)
.+|.++.+++|++++|.||++|+||.++ +++|+ .+|++.+++.+++.+....+ ....+..+...+++++++++
T Consensus 26 ~~~~~~~~~~g~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~ 102 (401)
T 1fc4_A 26 KEERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAF 102 (401)
T ss_dssp CCCCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHH
T ss_pred eeeeeeccCCCceEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHH
Confidence 4678899999999999999999999888 57996 89999999999987633211 11112356788999999999
Q ss_pred cCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC
Q 013204 90 FTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC 169 (447)
Q Consensus 90 ~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
+. .++.+++++|++|+..+++.+. .+++.|++.. .+|+.....+...|... ..++.
T Consensus 103 ~g---~~~~i~~~sGs~a~~~~~~~~~--------~~gd~v~~~~-~~~~~~~~~~~~~g~~~------------~~~~~ 158 (401)
T 1fc4_A 103 LG---MEDAILYSSCFDANGGLFETLL--------GAEDAIISDA-LNHASIIDGVRLCKAKR------------YRYAN 158 (401)
T ss_dssp HT---CSEEEEESCHHHHHHTTHHHHC--------CTTCEEEEET-TCCHHHHHHHHTSCSEE------------EEECT
T ss_pred hC---CCcEEEeCChHHHHHHHHHHHc--------CCCCEEEEcc-hhHHHHHHHHHHcCCce------------EEECC
Confidence 73 2367788899999999988763 2234555554 45555544444333221 11111
Q ss_pred CCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCC--cEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhh
Q 013204 170 PHYWRYAHPGETEEEYSTRLANNLEDLILKEGPE--TIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVI 247 (447)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~--~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~ 247 (447)
. +++++++.+....++ ++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|
T Consensus 159 ~------------------d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~ 216 (401)
T 1fc4_A 159 N------------------DMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSH 216 (401)
T ss_dssp T------------------CHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTT
T ss_pred C------------------CHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcc
Confidence 0 136777777642211 4678888998888887776 999999999999999999999
Q ss_pred c-CCC-ccccccccccCCCC--CCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHH
Q 013204 248 C-AFG-RLGTMFGCDKYSIK--PDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVA 321 (447)
Q Consensus 248 ~-g~g-~~g~~~~~~~~~~~--~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa 321 (447)
+ |+. +.|..+ .+..++. .|++ ++||.++++ . .|++++++++++.+..... ....+++.++++++++
T Consensus 217 ~~g~~~~~g~~~-~~~~~~~~~~di~~~s~sK~~~~~-~-gG~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~a~ 288 (401)
T 1fc4_A 217 AVGFVGENGRGS-HEYCDVMGRVDIITGTLGKALGGA-S-GGYTAARKEVVEWLRQRSR-----PYLFSNSLAPAIVAAS 288 (401)
T ss_dssp TTTTSSTTSCCH-HHHTTCTTCCSEEEEESSSTTCSS-S-CEEEEECHHHHHHHHHHCH-----HHHHSCCCCHHHHHHH
T ss_pred cccccCCCCCcc-HHHcCCCcCCcEEEecchhhccCC-C-CEEEEcCHHHHHHHHHhCc-----CceeCCCCCHHHHHHH
Confidence 5 773 445432 2334443 4777 789999665 3 4999999999888764210 1112557789999999
Q ss_pred HHHHHHHhh-hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 322 IEALKIYKE-RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 322 ~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
.++++.+.. ++..++++++++++++.|+++ +..+. .+.|.++.+.+.... ....+.+.|.++||
T Consensus 289 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~---~~~~~~~~~~~~~~~-----------~~~~l~~~l~~~gi 353 (401)
T 1fc4_A 289 IKVLEMVEAGSELRDRLWANARQFREQMSAA-GFTLA---GADHAIIPVMLGDAV-----------VAQKFARELQKEGI 353 (401)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCCBC---CSSSSEEEEEEECHH-----------HHHHHHHHHHHTTE
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCccc---CCCCCEEEEEcCChH-----------HHHHHHHHHHHCCc
Confidence 999987753 567788899999999999876 33332 356777778775311 24568889999999
Q ss_pred eEEeeC--------CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 401 LVRVSG--------DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 401 ~~~~~g--------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
++.++. +.+|++++..++++++++++++|+++++++
T Consensus 354 ~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 354 YVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp ECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred EEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 988753 359999988899999999999999998764
No 44
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=8.6e-32 Score=263.05 Aligned_cols=359 Identities=11% Similarity=0.048 Sum_probs=246.9
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-c
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-A 92 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~ 92 (447)
.|+++..+++|+++||.+|++|+||..+. ..+ +.+|++.+++.+++.+....+.. ...+...++++.+.+.+. +
T Consensus 8 ~f~~~~~~~~g~~~~d~~g~~~i~~~~~~--~~~-~~~~~v~~a~~~~~~~~~~~y~~--~~~~l~~~la~~l~~~~g~~ 82 (391)
T 3dzz_A 8 DFTHVPKRQGNSIKWGVLKEKELPMWIAE--MDF-KIAPEIMASMEEKLKVAAFGYES--VPAEYYKAVADWEEIEHRAR 82 (391)
T ss_dssp CCSSCCCCCTTBTTTTTCCTTCEECCSSC--CSS-CCCHHHHHHHHHHHTTCCCCCBC--CCHHHHHHHHHHHHHHHSCC
T ss_pred ccchhccCCCCccceeccCCCceeccccC--CCC-CCCHHHHHHHHHHHhcCcCCCCC--CCHHHHHHHHHHHHHHhCCC
Confidence 34456678999999999999999998773 334 48999999999998764333221 134455667777766653 1
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC--
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP-- 170 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 170 (447)
.+.+++++++||++|++.+++.+. .++++|++.+++||+........+.... .++..
T Consensus 83 ~~~~~i~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~-------------~~~~~~~ 141 (391)
T 3dzz_A 83 PKEDWCVFASGVVPAISAMVRQFT--------SPGDQILVQEPVYNMFYSVIEGNGRRVI-------------SSDLIYE 141 (391)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHS--------CTTCEEEECSSCCHHHHHHHHHTTCEEE-------------ECCCEEE
T ss_pred CCHHHEEECCCHHHHHHHHHHHhC--------CCCCeEEECCCCcHHHHHHHHHcCCEEE-------------Eeeeeec
Confidence 457799999999999999999873 3357899999999997655544322111 11110
Q ss_pred -CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC
Q 013204 171 -HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA 249 (447)
Q Consensus 171 -~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g 249 (447)
..+. .++++|++.+.. .++++|+++..++.+|. .++.+.+++|+++|++||+++|+||+|++
T Consensus 142 ~~~~~-------------~d~~~l~~~l~~---~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~ 204 (391)
T 3dzz_A 142 NSKYS-------------VNWADLEEKLAT---PSVRMMVFCNPHNPIGY-AWSEEEVKRIAELCAKHQVLLISDEIHGD 204 (391)
T ss_dssp TTEEE-------------CCHHHHHHHHTS---TTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred CCcee-------------ecHHHHHHHHhc---cCceEEEEECCCCCCCc-ccCHHHHHHHHHHHHHCCCEEEEeccccc
Confidence 0000 014778887752 35667766766777775 45677899999999999999999999998
Q ss_pred CCccccc-cccccCCC-CCC----eeeecccCCCcccceeEEEeC-hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHH
Q 013204 250 FGRLGTM-FGCDKYSI-KPD----LVSFAKALSSAYMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAI 322 (447)
Q Consensus 250 ~g~~g~~-~~~~~~~~-~~d----~v~~sK~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~ 322 (447)
+++.|.. .....++. .+| +.++||.++.+++++|+++++ +++++.+.... ....+++.++++++++.
T Consensus 205 ~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~~ 278 (391)
T 3dzz_A 205 LVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESF------FLAGIGEPNLLAIPAAI 278 (391)
T ss_dssp CBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHH------HHHTCSSCCTTHHHHHH
T ss_pred ccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHH------HhhccCCCCHHHHHHHH
Confidence 8777642 23333332 267 446789987333899999997 88888876321 11235667888888888
Q ss_pred HHHHHHh--hhcHHHHHHHHHHHHHHhHhh-ccCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-H
Q 013204 323 EALKIYK--ERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-K 397 (447)
Q Consensus 323 a~l~~~~--~~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 397 (447)
++++... .++..++++++.+++.+.|++ +++. ....+.+ .+..+.+..... ....+.+.|+ +
T Consensus 279 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~ 345 (391)
T 3dzz_A 279 AAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEV---KVLDSNASYLAWVDISALGM----------NAEDFCKYLREK 345 (391)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTS---EECCCCBSSEEEEECGGGCS----------CHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCc---EEeccCceEEEEEehhhcCC----------CHHHHHHHHHHh
Confidence 8887522 244566777777888888877 4332 2223333 344466654211 1456888886 8
Q ss_pred cCceEEeeC-------CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 398 HGMLVRVSG-------DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 398 ~Gi~~~~~g-------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+||.+.++. +.+|++++ +++++|++++++|+++++++
T Consensus 346 ~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 346 TGLIISAGNGYRGNGHEFVRINLA--CPKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp HCEECEESGGGCTTGGGEEEEECC--SCHHHHHHHHHHHHHHHHTC
T ss_pred CCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 999998752 56999965 79999999999999998754
No 45
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=100.00 E-value=2.6e-31 Score=261.42 Aligned_cols=338 Identities=17% Similarity=0.162 Sum_probs=244.2
Q ss_pred EecCcEEEeCCCCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCCc---ccccCcCCChHHHHHHHHHHHhcCcCCCC
Q 013204 21 KSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPF---YHSFWNRTTKPSLDLAKELLEMFTASKMA 96 (447)
Q Consensus 21 ~~~g~~~~d~dg~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 96 (447)
++.+.++.|.||++|+||+++ +++|+ .||++.+++.+++++... .+....+..+...++++++++++ +.+
T Consensus 47 ~~~~~~~~~~~g~~~ld~~s~---~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~---g~~ 120 (409)
T 3kki_A 47 NGKHLVLGKQASPDDIILQSN---DYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT---GFD 120 (409)
T ss_dssp TSSCTTCCCCCCTTSEECCCS---CTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHH---TCS
T ss_pred CCCeeeeCCCCCCceEEeecc---CccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHh---CCC
Confidence 456777888899999999886 45565 689999999999987432 12233345566778999999987 345
Q ss_pred eEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCC
Q 013204 97 KVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYA 176 (447)
Q Consensus 97 ~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (447)
..+++++|++|++.+++.+. .+++.|++ +..+|+....+....+.... .++..
T Consensus 121 ~~i~~~sGt~a~~~~l~~~~--------~~gd~Vl~-~~~~~~~~~~~~~~~g~~~~------------~~~~~------ 173 (409)
T 3kki_A 121 ECLLSQSGWNANVGLLQTIC--------QPNTNVYI-DFFAHMSLWEGARYANAQAH------------PFMHN------ 173 (409)
T ss_dssp EEEEESCHHHHHHHHHHHHC--------CTTCEEEE-ETTSCHHHHHHHHHTTCEEE------------EECTT------
T ss_pred eEEEecchHHHHHHHHHHhc--------CCCCEEEE-CCCcCHHHHHHHHHcCCeEE------------EecCC------
Confidence 67888999999999999763 23355555 45555655444444433211 11111
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC--CCccc
Q 013204 177 HPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA--FGRLG 254 (447)
Q Consensus 177 ~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g--~g~~g 254 (447)
++++|++.+... .+++|+++++++++|.+.+ +++|+++|++||++||+||+|++ +|+.|
T Consensus 174 ------------d~~~le~~l~~~---~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g 234 (409)
T 3kki_A 174 ------------NCDHLRMLIQRH---GPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNG 234 (409)
T ss_dssp ------------CHHHHHHHHHHH---CSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGG
T ss_pred ------------CHHHHHHHHHhc---CCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCC
Confidence 147888888753 2479999999999998877 99999999999999999999997 77776
Q ss_pred cccccccCCC--CCCe--eeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 255 TMFGCDKYSI--KPDL--VSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 255 ~~~~~~~~~~--~~d~--v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
..+. ..+++ .+|+ .++||+++++ .|++++++++++.+.... ..+ ..+...++++++++.++++.++.
T Consensus 235 ~~~~-~~~~~~~~~di~~~s~sK~~~~~---gg~v~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~aa~~aal~~~~~ 305 (409)
T 3kki_A 235 AGLL-AELGLTREVHFMTASLAKTFAYR---AGAIWCNNEVNRCVPFIS---YPA--IFSSTLLPYEAAGLETTLEIIES 305 (409)
T ss_dssp CCHH-HHHTCGGGCSEEEEESSSTTCSS---CEEEEESSSGGGTHHHHC---HHH--HHSBCCCHHHHHHHHHHHHHHHH
T ss_pred Ccch-hhcCCCCCCCEEEeecchhhCCC---ceEEEECHHHHHHHHHhC---cCc--cccCCCcHHHHHHHHHHHHHHhc
Confidence 5543 44455 4677 4689999875 489999998887765321 011 11234678889999999988765
Q ss_pred -hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----
Q 013204 331 -RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---- 405 (447)
Q Consensus 331 -~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---- 405 (447)
+++.++++++++++++.|+++ ...+. +.+.++.+.+.... ....+.+.|+++||++.+.
T Consensus 306 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~----~~~~~~~~~~~~~~-----------~~~~~~~~L~~~Gv~v~~~~~~~ 369 (409)
T 3kki_A 306 ADNRRQHLDRMARKLRIGLSQL-GLTIR----SESQIIGLETGDER-----------NTEKVRDYLESNGVFGSVFCRPA 369 (409)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT-TCCCC----CSSSEEEEEEESHH-----------HHHHHHHHHHHTTEECEEECTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHc-CCccC----CCCCEEEEEeCCHH-----------HHHHHHHHHHHCCceEeeeCCCC
Confidence 467788889999999999876 32222 46677777775421 2445888999999998653
Q ss_pred ---C-CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 406 ---G-DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 406 ---g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+ +.+|++++..+|+++|++++++|+++++.
T Consensus 370 ~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 370 TSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp SCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 1 46999999999999999999999998864
No 46
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.98 E-value=2.7e-30 Score=253.26 Aligned_cols=349 Identities=17% Similarity=0.198 Sum_probs=250.1
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCCC-CCHHHHHHHHHHHhcCCcc---cccCcCCChHHHHHHHHHHHh
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPFY---HSFWNRTTKPSLDLAKELLEM 89 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~ 89 (447)
.+|+++.+++|++++ .||+.++||.++ .++|+ .+|++.+++.+++.+.... +....+..+...++++++++.
T Consensus 25 ~~~~~~~~~~g~~~~-~~g~~~idl~~~---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~ 100 (398)
T 3a2b_A 25 AYFRPIQSKQDTEVK-IDGRRVLMFGSN---SYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAY 100 (398)
T ss_dssp CSSCCBCSCSSSEEE-ETTEEEEECSCS---CTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHH
T ss_pred cceeeecCCCCceEE-ECCceEEEeecc---cccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHH
Confidence 468889999999999 999999999888 33677 7999999999988653221 122234567888999999988
Q ss_pred cCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC
Q 013204 90 FTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC 169 (447)
Q Consensus 90 ~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
+ +.+++++++||++|++.+++.+. .+++.|++.++.|.+. .......|... ..++.
T Consensus 101 ~---g~~~v~~~~ggt~a~~~~~~~~~--------~~gd~V~~~~p~~~~~-~~~~~~~g~~~------------~~v~~ 156 (398)
T 3a2b_A 101 V---GKEAAILFSTGFQSNLGPLSCLM--------GRNDYILLDERDHASI-IDGSRLSFSKV------------IKYGH 156 (398)
T ss_dssp H---TCSEEEEESSHHHHHHHHHHHSS--------CTTCEEEEETTCCHHH-HHHHHHSSSEE------------EEECT
T ss_pred h---CCCcEEEECCHHHHHHHHHHHHh--------CCCCEEEECCccCHHH-HHHHHHcCCce------------EEeCC
Confidence 7 34699999999999999999763 2346677776665444 33333333221 11221
Q ss_pred CCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC
Q 013204 170 PHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA 249 (447)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g 249 (447)
.+ +++|++.+....++++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+.
T Consensus 157 ~d------------------~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~ 214 (398)
T 3a2b_A 157 NN------------------MEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSL 214 (398)
T ss_dssp TC------------------HHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTT
T ss_pred CC------------------HHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcc
Confidence 11 378888887532225778889999888887776 99999999999999999999974
Q ss_pred C--CccccccccccCCCC--CCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHH
Q 013204 250 F--GRLGTMFGCDKYSIK--PDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIE 323 (447)
Q Consensus 250 ~--g~~g~~~~~~~~~~~--~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a 323 (447)
+ ++.+... .+.+++. +|++ ++||.++.. + |++++++++++.+.... .....+...+++.++++.+
T Consensus 215 ~~~~~~~~~~-~~~~~~~~~~di~~~s~sK~~~~~--G-G~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~a~~~~ 285 (398)
T 3a2b_A 215 GVIGHKGAGT-ASHFGLNDDVDLIMGTFSKSLASL--G-GFVAGDADVIDFLKHNA-----RSVMFSASMTPASVASTLK 285 (398)
T ss_dssp TTSSGGGCCH-HHHHTCGGGCSEEEEESSSTTCSS--C-EEEEECHHHHHHHHHHC-----HHHHSSBCCCHHHHHHHHH
T ss_pred cccCCCCCch-HhhcCCCcCCeEEEecccccccCC--C-cEEEeCHHHHHHHHHhc-----ccceecCCCCHHHHHHHHH
Confidence 3 3333322 3334543 6888 789999742 2 88999999988876420 0122344567777767777
Q ss_pred HHHHHhh-hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceE
Q 013204 324 ALKIYKE-RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLV 402 (447)
Q Consensus 324 ~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~ 402 (447)
+|+..+. ++..++++++.+++.+.|+++ +..+. .+.|.++.+.+.... ....+.+.|+++||.+
T Consensus 286 ~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~---~~~g~~~~~~~~~~~-----------~~~~l~~~l~~~gi~v 350 (398)
T 3a2b_A 286 ALEIIQNEPEHIEKLWKNTDYAKAQLLDH-GFDLG---ATESPILPIFIRSNE-----------KTFWVTKMLQDDGVFV 350 (398)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHHHHHHHT-TCCBC---SCCSSEEEEECCCHH-----------HHHHHHHHHHHTTEEC
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHhc-CCCcC---CCCCCEEEEEcCCHH-----------HHHHHHHHHHHCCcEE
Confidence 8876543 457788888999999999876 33322 345677777764211 2456888999999999
Q ss_pred EeeC--------CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 403 RVSG--------DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 403 ~~~g--------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.++. +.+|++++..++++++++++++|+++++++
T Consensus 351 ~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 351 NPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp EEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 8762 569999888889999999999999998764
No 47
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.98 E-value=3.4e-31 Score=257.56 Aligned_cols=350 Identities=12% Similarity=0.077 Sum_probs=238.1
Q ss_pred eEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc-CCC
Q 013204 17 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-SKM 95 (447)
Q Consensus 17 ~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~ 95 (447)
+-..+++|+++||.||++|+||.++. ++++ .+|++.+++.+++.+....+.. .+ .+....+++.+.+.+.. .+.
T Consensus 7 ~~~~~~~g~~~~d~~g~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~ 81 (377)
T 3fdb_A 7 IEDLRARNTMKWTRYGQGVLPLWVAE--SDFS-TCPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARP 81 (377)
T ss_dssp HHHHHHTCCHHHHSSCTTSEECCSSC--CCSC-CCHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCG
T ss_pred HHHhcCCCCceeeccCCCeeeecccC--CCCC-CCHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCH
Confidence 33458999999999999999998874 4555 7999999999999763332222 22 45555666666554321 356
Q ss_pred CeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccC
Q 013204 96 AKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRY 175 (447)
Q Consensus 96 ~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
+++++++||++|++.+++.+. .++++|++.+++||+........+.... .++....
T Consensus 82 ~~i~~t~g~~~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~-------------~~~~~~~--- 137 (377)
T 3fdb_A 82 EWIFPIPDVVRGLYIAIDHFT--------PAQSKVIVPTPAYPPFFHLLSATQREGI-------------FIDATGG--- 137 (377)
T ss_dssp GGEEEESCHHHHHHHHHHHHS--------CTTCCEEEEESCCTHHHHHHHHHTCCEE-------------EEECTTS---
T ss_pred HHEEEeCChHHHHHHHHHHhc--------CCCCEEEEcCCCcHhHHHHHHHcCCEEE-------------EccCCCC---
Confidence 799999999999999999763 2347899999999998655544332211 1111100
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccc-
Q 013204 176 AHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG- 254 (447)
Q Consensus 176 ~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g- 254 (447)
.+++++++.+.. +..++++++| ++.+|. ..+.+.+++|+++|++||+++|+||+|+++++.|
T Consensus 138 ------------~d~~~l~~~l~~---~~~~v~i~~p-~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~ 200 (377)
T 3fdb_A 138 ------------INLHDVEKGFQA---GARSILLCNP-YNPLGM-VFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQ 200 (377)
T ss_dssp ------------CCHHHHHHHHHT---TCCEEEEESS-BTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC
T ss_pred ------------CCHHHHHHHhcc---CCCEEEEeCC-CCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCC
Confidence 114788888863 2344555555 556664 4577889999999999999999999999887766
Q ss_pred ccc-cc---ccCCCCCCeeeecccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh
Q 013204 255 TMF-GC---DKYSIKPDLVSFAKALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK 329 (447)
Q Consensus 255 ~~~-~~---~~~~~~~d~v~~sK~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~ 329 (447)
... .+ ...+...++.++||.++.+++++|+++. ++++++.+.. .....+++.++++++++.++++..+
T Consensus 201 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~ 273 (377)
T 3fdb_A 201 HTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQ-------LSPVIKDGASTLGLIAAEAAYRYGT 273 (377)
T ss_dssp CCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHH-------SCHHHHCCCCHHHHHHHHHHHHHCH
T ss_pred CCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHH-------HHHhhcCCCCHHHHHHHHHHHhccH
Confidence 221 11 1112224455789999754489998776 7888888763 2233467788999999888887532
Q ss_pred h--hcHHHHHHHHHHHHHHhHhh-ccCCCceeeEeeeeeE-EEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEe
Q 013204 330 E--RNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTGLI-LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRV 404 (447)
Q Consensus 330 ~--~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~ 404 (447)
+ ++..++++++.+++.+.|++ ++. +....+.+.+ ..+.+....... .+.+.|+++ ||++.+
T Consensus 274 ~~~~~~~~~~~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~gi~v~~ 339 (377)
T 3fdb_A 274 DFLNQEVAYLKNNHDFLLHEIPKRIPG---AKITPMQATYLMWIDFRDTTIEG-----------SPSEFFIEKAKVAMND 339 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTT---CEECCCSBCSEEEEECTTSCCCS-----------CHHHHHHHHHCEECEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCC---ceEecCCeeEEEEEECcccCCCH-----------HHHHHHHHhCCEEecC
Confidence 1 44566777777888888876 332 2223344443 356665422111 256666665 999987
Q ss_pred e-------CCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 405 S-------GDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 405 ~-------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+ .+.+|++++ .++++|++++++|++++++
T Consensus 340 g~~~~~~~~~~~Ris~~--~~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 340 GAWFGEDGTGFCRLNFA--TSREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp GGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHHTT
T ss_pred ChhccCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHhh
Confidence 5 267999965 5999999999999998764
No 48
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.97 E-value=8.3e-30 Score=248.47 Aligned_cols=344 Identities=17% Similarity=0.235 Sum_probs=244.2
Q ss_pred CCCeEEEEecCcEEEeCCCCEEEecCCccccccCC-CCCHHHHHHHHHHHhcCCcc---cccCcCCChHHHHHHHHHHHh
Q 013204 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALG-GSEPRLVAAATAQLNTLPFY---HSFWNRTTKPSLDLAKELLEM 89 (447)
Q Consensus 14 ~~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~ 89 (447)
.+|.++.+++|++++ .+|++|+||+++. ++| +.+|++.+++.+++.+.... +....+..+...++++.++++
T Consensus 21 ~~~~~~~~~~g~~~~-~~g~~~id~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~ 96 (384)
T 1bs0_A 21 RRRYPVAQGAGRWLV-ADDRQYLNFSSND---YLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEW 96 (384)
T ss_dssp CCCCCCSBCSSSEEE-ETTEEEEECSCCC---TTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHH
T ss_pred cccccccCCCCceEE-ECCceEEEeeccC---ccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHH
Confidence 467888999999999 8999999998873 377 58999999999998763211 111123567888999999999
Q ss_pred cCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC
Q 013204 90 FTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC 169 (447)
Q Consensus 90 ~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
+. .++.+++++|++|+..+++.+. .+++.| +++..+|+.....+...|... ..++.
T Consensus 97 ~g---~~~~i~~~sGt~a~~~~~~~~~--------~~gd~v-~~~~~~~~~~~~~~~~~g~~~------------~~~~~ 152 (384)
T 1bs0_A 97 LG---YSRALLFISGFAANQAVIAAMM--------AKEDRI-AADRLSHASLLEAASLSPSQL------------RRFAH 152 (384)
T ss_dssp HT---CSEEEEESCHHHHHHHHHHHHC--------CTTCEE-EEETTCCHHHHHHHHTSSSEE------------EEECT
T ss_pred hC---CCcEEEeCCcHHHHHHHHHHhC--------CCCcEE-EEcccccHHHHHHHHHcCCCE------------EEeCC
Confidence 73 3478888999999999998762 223445 445566676655554444321 11111
Q ss_pred CCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-
Q 013204 170 PHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC- 248 (447)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~- 248 (447)
. +.++|++.+....+ .+++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+
T Consensus 153 ~------------------d~~~l~~~l~~~~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~ 209 (384)
T 1bs0_A 153 N------------------DVTHLARLLASPCP-GQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGT 209 (384)
T ss_dssp T------------------CHHHHHHHHHSCCS-SCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTT
T ss_pred C------------------CHHHHHHHHHhcCC-CCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCccc
Confidence 1 13778888764322 3678899988888888876 8999999999999999999996
Q ss_pred CC-CccccccccccCCCCCCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHH
Q 013204 249 AF-GRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEAL 325 (447)
Q Consensus 249 g~-g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l 325 (447)
|+ ++.|..+ ...++..+|++ ++||.++. +.|++++++++++.+.... .....+.+.++++++++.+++
T Consensus 210 ~~~~~~~~~~-~~~~~~~~di~~~s~sK~~~~---~GG~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~al 280 (384)
T 1bs0_A 210 GVIGEQGRGS-CWLQKVKPELLVVTFGKGFGV---SGAAVLCSSTVADYLLQFA-----RHLIYSTSMPPAQAQALRASL 280 (384)
T ss_dssp TTSSGGGCCH-HHHTTCCCSEEEEESSSTTSS---CCEEEEECHHHHHHHHHHC-----HHHHSSBCCCHHHHHHHHHHH
T ss_pred ceecCCCCch-HHhcCCCCcEEEeeccchhhc---cCcEEEeCHHHHHHHHHhc-----hhhhcCCCCCHHHHHHHHHHH
Confidence 32 3344332 24455668988 78999873 3489999999988876421 011123467899999999999
Q ss_pred HHHhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceE
Q 013204 326 KIYKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLV 402 (447)
Q Consensus 326 ~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~ 402 (447)
+.+.+ ++..++++++.+++.+.|+++ ... ...+.|.++.+.+.... ....+.+.|+++||.+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~---~~~~~~~~~~~~~~~~~-----------~~~~l~~~l~~~gi~v 345 (384)
T 1bs0_A 281 AVIRSDEGDARREKLAALITRFRAGVQDL-PFT---LADSCSAIQPLIVGDNS-----------RALQLAEKLRQQGCWV 345 (384)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCE---ECSCCSSBCCEEEESHH-----------HHHHHHHHHHHTTEEC
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHhc-CCc---ccCCCCCEEEEEeCCHH-----------HHHHHHHHHHHCCcEE
Confidence 87752 456778888888888888775 211 11244556566664211 2456888999999999
Q ss_pred EeeC--------CEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 403 RVSG--------DNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 403 ~~~g--------~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
.++. +.+|++++..++++++++++++|+++
T Consensus 346 ~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 346 TAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp CEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred EeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 8752 46999999888999999999999864
No 49
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.97 E-value=6.8e-30 Score=248.85 Aligned_cols=356 Identities=10% Similarity=0.054 Sum_probs=230.3
Q ss_pred CeEEEEecCcEEEeCC-CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cC
Q 013204 16 PLVIEKSEGSYVYDVN-GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-AS 93 (447)
Q Consensus 16 ~~~~~~~~g~~~~d~d-g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~ 93 (447)
+++..+++|+++||.+ |++++||.++. +.++ .+|++.+++.+++.+....++. ...+...++++.+.+.+. ..
T Consensus 6 ~~~~~~~~g~~~~d~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~--~~~~~~~~l~~~l~~~~g~~~ 80 (383)
T 3kax_A 6 KTVNRRGTHSIKWDTYKNEELIHAWIAD--MDFE-VPQPIQTALKKRIEHPIFGYTL--PPENIGDIICNWTKKQYNWDI 80 (383)
T ss_dssp -------------CCCSSSCCEECCCSS--CSSC-CCHHHHHHHHHHHHSCCCCCCC--CCTTHHHHHHHHHHHHHCCCC
T ss_pred ceeeccCCCceeeeccCCCCeeeccccc--CCCC-CCHHHHHHHHHHHhcCCCCCCC--CCHHHHHHHHHHHHHHhCCCC
Confidence 4566789999999954 58999998773 4454 7999999999999764332222 156677788888887763 13
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcc
Q 013204 94 KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 94 ~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
+.+++++++||++|++.+++.+. .++++|++.+++||+........+.... .++....
T Consensus 81 ~~~~v~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~-------------~~~~~~~- 138 (383)
T 3kax_A 81 QKEWIVFSAGIVPALSTSIQAFT--------KENESVLVQPPIYPPFFEMVTTNNRQLC-------------VSPLQKQ- 138 (383)
T ss_dssp CGGGEEEESCHHHHHHHHHHHHC--------CTTCEEEECSSCCHHHHHHHHHTTCEEE-------------ECCCEEE-
T ss_pred ChhhEEEcCCHHHHHHHHHHHhC--------CCCCEEEEcCCCcHHHHHHHHHcCCEEE-------------eccceec-
Confidence 67799999999999999999773 3357899999999998755544322111 1111000
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
..+ + ..++++|++.+. + ++++|+++..++.+|. ..+.+.+++|.++|++||+++|+||+|+++++.
T Consensus 139 -----~~~---~-~~d~~~l~~~l~---~-~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~ 204 (383)
T 3kax_A 139 -----NDT---Y-AIDFEHLEKQFQ---Q-GVKLMLLCSPHNPIGR-VWKKEELTKLGSLCTKYNVIVVADEIHSDIIYA 204 (383)
T ss_dssp -----TTE---E-ECCHHHHHHHHT---T-TCCEEEEESSBTTTTB-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCT
T ss_pred -----CCc---E-EEcHHHHHHHhC---c-CCeEEEEeCCCCCCCc-CcCHHHHHHHHHHHHHCCCEEEEEccccccccC
Confidence 000 0 001477888773 2 3445555656666665 557788999999999999999999999988777
Q ss_pred cccc-ccccC-----CCCCCeeeecccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHH
Q 013204 254 GTMF-GCDKY-----SIKPDLVSFAKALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK 326 (447)
Q Consensus 254 g~~~-~~~~~-----~~~~d~v~~sK~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~ 326 (447)
|... ....+ +..+.+.++||.++.+++++|++++ ++++++.+... .....+++.++++++++.++++
T Consensus 205 g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~ 278 (383)
T 3kax_A 205 DHTHTPFASLSEELAARTITCMAPSKTFNIAGLQASIIIIPNEKLRQAFTSI------QYRQGFHGLNIFAYTAMQSAYT 278 (383)
T ss_dssp TCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHH------HHHTTCCCCCHHHHHHHHHHTT
T ss_pred CCCceeHhhcCccccCcEEEEEEChhhccCcchhheEEEeCCHHHHHHHHHH------HhhcccCCCCHHHHHHHHHHHH
Confidence 6422 12111 2223455789999833389999998 68888877632 1122345788999998888886
Q ss_pred HHh--hhcHHHHHHHHHHHHHHhHhh-ccCCCceeeEeeeeeEE-EEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCce
Q 013204 327 IYK--ERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTGLIL-GTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGML 401 (447)
Q Consensus 327 ~~~--~~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~~~~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~ 401 (447)
..+ .++..++++++.+++.+.|++ ++. +....+.+.++ .+.+..... ....+.+.|+ ++||+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~gi~ 345 (383)
T 3kax_A 279 ECNDWLNEIRFYIEDNAKFACEYIKDHIPT---LSVMKPEGSFLLWIDCSALNL----------SQDERTKLLEEKGKII 345 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHCTT---CEECCCSBSSEEEEECGGGCC----------CHHHHHHHHHHTSCEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhCCC---ceEecCCceEEEEEEccccCC----------CHHHHHHHHHhhCCEE
Confidence 422 234556677777778777776 332 22334444443 466654211 1456888887 68999
Q ss_pred EEee-------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 402 VRVS-------GDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 402 ~~~~-------g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
+.++ .+.+|+++. .++++|++++++|++++
T Consensus 346 v~~g~~~~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 346 VEPGEKYGLGGEEHIGINIG--CPRSVLEEILNRLRHTF 382 (383)
T ss_dssp CEESGGGCTTCTTEEEEECS--SCHHHHHHHHHHHHHHH
T ss_pred eECchhhcCCCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 9874 267999955 69999999999998876
No 50
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.97 E-value=7.4e-29 Score=242.29 Aligned_cols=356 Identities=9% Similarity=-0.004 Sum_probs=221.1
Q ss_pred EEEEecCcEEEeCCCC-----EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCCh-HHHHHHHHHHHhcC
Q 013204 18 VIEKSEGSYVYDVNGK-----KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTK-PSLDLAKELLEMFT 91 (447)
Q Consensus 18 ~~~~~~g~~~~d~dg~-----~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~ 91 (447)
+-.++.|+++||.+|+ +++||.++. ..+| .+|++.+++.+++......+.. ...+ ....+++.+.+.+.
T Consensus 8 ~~~~~~~~~~~d~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~--~~~~~lr~~la~~l~~~~g 82 (390)
T 1d2f_A 8 VDRHGTWCTQWDYVADRFGTADLLPFTISD--MDFA-TAPCIIEALNQRLMHGVFGYSR--WKNDEFLAAIAHWFSTQHY 82 (390)
T ss_dssp ----------------------CEECCSSS--CSSC-CCHHHHHHHHHHHTTCCCCCCC--SCCHHHHHHHHHHHHHHSC
T ss_pred ccccCCCccchhhhccccCCCCeeEeeecC--CCCC-CCHHHHHHHHHHHhCCCCCCCC--CChHHHHHHHHHHHHHhcC
Confidence 4467999999999998 789997664 4577 7899999999998653222221 1334 45555555554432
Q ss_pred -cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC
Q 013204 92 -ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 92 -~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
..+.+++++++||++|++.+++.+. .++++|++.+++||+........+. .. ..++..
T Consensus 83 ~~~~~~~v~~t~g~~~al~~~~~~l~--------~~gd~vl~~~p~y~~~~~~~~~~g~-~~------------~~v~~~ 141 (390)
T 1d2f_A 83 TAIDSQTVVYGPSVIYMVSELIRQWS--------ETGEGVVIHTPAYDAFYKAIEGNQR-TV------------MPVALE 141 (390)
T ss_dssp CCCCGGGEEEESCHHHHHHHHHHHSS--------CTTCEEEEEESCCHHHHHHHHHTTC-EE------------EEEECE
T ss_pred CCCCHHHEEEcCCHHHHHHHHHHHhc--------CCCCEEEEcCCCcHHHHHHHHHCCC-EE------------EEeecc
Confidence 1456789999999999999999763 2347899999999998765543222 11 111110
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 171 HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
.. ..+ + ..++++|++.+.. .++++|++...++.+|.+ .+.+++++|.++|++||+++|+||+|+++
T Consensus 142 ~~------~~~---~-~~d~~~l~~~l~~---~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~ 207 (390)
T 1d2f_A 142 KQ------ADG---W-FCDMGKLEAVLAK---PECKIMLLCSPQNPTGKV-WTCDELEIMADLCERHGVRVISDEIHMDM 207 (390)
T ss_dssp EC------SSS---E-ECCHHHHHHHHTS---TTEEEEEEESSCTTTCCC-CCTTHHHHHHHHHHHTTCEEEEECTTTTC
T ss_pred cC------CCc---c-ccCHHHHHHHhcc---CCCeEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence 00 000 0 0013778877752 245666654456666654 56789999999999999999999999988
Q ss_pred CccccccccccCCCCC---C-eeeecccCCCcccceeEEEeC-hhHHHHhhhccCCCCccCc-CCCC-CCcHHHHHHHHH
Q 013204 251 GRLGTMFGCDKYSIKP---D-LVSFAKALSSAYMPIGAILVS-PEVSEVIHSQSNTLGSFSH-GFTY-SGHPVSCAVAIE 323 (447)
Q Consensus 251 g~~g~~~~~~~~~~~~---d-~v~~sK~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~-~~t~-~~~~~~~~aa~a 323 (447)
.+.|..+. ....+.+ | +.++||.++.+++++|+++++ +++++.+... .. ..++ +.++++++++.+
T Consensus 208 ~~~g~~~~-~~~~~~~~~~d~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~a~~~ 279 (390)
T 1d2f_A 208 VWGEQPHI-PWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSA-------LKGRDGLSSPSVLALTAHIA 279 (390)
T ss_dssp BCSSSCCC-CGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHH-------HHTTSCCCSCCHHHHHHHHH
T ss_pred ccCCCCCc-CHHHcchhhHhhccCccHhhcccChhheEEEECCHHHHHHHHHH-------HhhhcccCCCCHHHHHHHHH
Confidence 76664321 1112222 3 778999997333899999985 7888777532 22 2354 678889888888
Q ss_pred HHHHHh--hhcHHHHHHHHHHHHHHhHhh-ccCCCceeeEeeeee-EEEEEeecCCCCCCCCCCCcchHHHHHHHHH-Hc
Q 013204 324 ALKIYK--ERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KH 398 (447)
Q Consensus 324 ~l~~~~--~~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~ 398 (447)
+++... -++..++++++.+++.+.|++ ++... .+.+.|. ++.+.+..... ....+.+.|+ ++
T Consensus 280 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~---~~~~~~~~~~~~~~~~~~~----------~~~~l~~~l~~~~ 346 (390)
T 1d2f_A 280 AYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELN---WQIPQSTYLAWLDLRPLNI----------DDNALQKALIEQE 346 (390)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC---CCCCSBCSEEEEECGGGCC----------CHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCE---EecCCccEEEEEEccccCC----------CHHHHHHHHHHHc
Confidence 887421 133456667777777777776 43322 2334444 44567654210 1446788888 68
Q ss_pred CceEEee-------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 399 GMLVRVS-------GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 399 Gi~~~~~-------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
||++.++ .+.+|++++. ++++|++++++|+++++++
T Consensus 347 gi~v~~g~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 347 KVAIMPGYTYGEEGRGFVRLNAGC--PRSKLEKGVAGLINAIRAV 389 (390)
T ss_dssp CEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHHHH
T ss_pred CEEeeCccccCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhh
Confidence 9999875 2579999664 6899999999999988764
No 51
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.97 E-value=2.4e-29 Score=245.66 Aligned_cols=353 Identities=10% Similarity=0.032 Sum_probs=238.6
Q ss_pred eEEEEecCcEEEeCCCCEE-----EecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC
Q 013204 17 LVIEKSEGSYVYDVNGKKY-----LDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT 91 (447)
Q Consensus 17 ~~~~~~~g~~~~d~dg~~~-----lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (447)
++..++.|+++||.+|++| +||..+. +..+.+|++.+++.+++.+....+. ....+...++++.+.+.+.
T Consensus 11 ~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~~---~~~~~~~~v~~a~~~~~~~~~~~y~--~~~~~~~~~l~~~l~~~~g 85 (391)
T 4dq6_A 11 IVDRSNNFSSKWSEMEKKYGTNDLLPMWVAD---MDFKAAPCIIDSLKNRLEQEIYGYT--TRPDSYNESIVNWLYRRHN 85 (391)
T ss_dssp CCCCTTTTBHHHHCHHHHHSCSCSEECCSSS---CSSCCCHHHHHHHHHHHTTCCCCCB--CCCHHHHHHHHHHHHHHHC
T ss_pred ccccccCCceeeeecccccCCCCceeccccC---CCCCCCHHHHHHHHHHHhCCCCCCC--CCCHHHHHHHHHHHHHHhC
Confidence 3455789999999987555 9998773 3334789999999999976433222 2345667778888887763
Q ss_pred -cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC
Q 013204 92 -ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 92 -~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
..+.+++++++||++|++.+++.+. .++++|++.+++||+........+.... .++..
T Consensus 86 ~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~-------------~~~~~ 144 (391)
T 4dq6_A 86 WKIKSEWLIYSPGVIPAISLLINELT--------KANDKIMIQEPVYSPFNSVVKNNNRELI-------------ISPLQ 144 (391)
T ss_dssp CCCCGGGEEEESCHHHHHHHHHHHHS--------CTTCEEEECSSCCTHHHHHHHHTTCEEE-------------ECCCE
T ss_pred CCCcHHHeEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCCHHHHHHHHHcCCeEE-------------eeeee
Confidence 1457799999999999999999773 3357899999999998765544322111 11111
Q ss_pred --CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc
Q 013204 171 --HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC 248 (447)
Q Consensus 171 --~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~ 248 (447)
....+. . +++++++.+. + +++|+++..++.+|. .++.+.+++|+++|++||+++|+||+|+
T Consensus 145 ~~~~~~~~---~--------d~~~l~~~l~---~--~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~ 207 (391)
T 4dq6_A 145 KLENGNYI---M--------DYEDIENKIK---D--VKLFILCNPHNPVGR-VWTKDELKKLGDICLKHNVKIISDEIHS 207 (391)
T ss_dssp ECTTSCEE---C--------CHHHHHHHCT---T--EEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred ecCCCceE---e--------eHHHHHHHhh---c--CCEEEEECCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEeecccc
Confidence 000000 0 1377777665 2 566666666776775 4567789999999999999999999999
Q ss_pred CCCcccccc-ccccCC-----CCCCeeeecccCCCcccceeEEEeCh-hHHHHhhhccCCCCccCcCCCCCCcHHHHHHH
Q 013204 249 AFGRLGTMF-GCDKYS-----IKPDLVSFAKALSSAYMPIGAILVSP-EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVA 321 (447)
Q Consensus 249 g~g~~g~~~-~~~~~~-----~~~d~v~~sK~l~gg~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa 321 (447)
++.+.|... .+..+. ....+.++||.++.+++++|++++++ ++++.+... .....+++.++++++++
T Consensus 208 ~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~ 281 (391)
T 4dq6_A 208 DIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDA------FTRIDIKRNNCFSLVAT 281 (391)
T ss_dssp TCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHH------HHHTTCCCCCHHHHHHH
T ss_pred ccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHH------HHhhcCCCCCHHHHHHH
Confidence 887766432 122211 11224468899974448999999875 888877632 12234567889999988
Q ss_pred HHHHHHHh--hhcHHHHHHHHHHHHHHhHhh-ccCCCceeeEeeeeeEE-EEEeecCCCCCCCCCCCcchHHHHHHHHHH
Q 013204 322 IEALKIYK--ERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTGLIL-GTEFADNKSPNEPFPPEWGIGAYFGAQCEK 397 (447)
Q Consensus 322 ~a~l~~~~--~~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~~~~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 397 (447)
.++++..+ -++..++++++.+++++.|++ ++. +....+.+.++ .+.+..... ....+.+.|++
T Consensus 282 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~ 348 (391)
T 4dq6_A 282 EASYNNGESWLESFLEYLESNIDFAIKYINENMPK---LKVRKPEGTYLLWVDFSALGL----------SDEELESILVQ 348 (391)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTT---SEECCCSBSSEEEEECGGGCC----------CHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCC---CEecCCCccEEEEEEhhhcCC----------CHHHHHHHHHH
Confidence 88887522 133456666777777777766 332 23334444443 466654211 14568889999
Q ss_pred c-CceEEee-------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 398 H-GMLVRVS-------GDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 398 ~-Gi~~~~~-------g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
+ ||++.++ .+.+|++++ +++++|++++++|++++
T Consensus 349 ~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 349 KGKVALNQGNSFGIGGSGYQRINLA--CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp TTCEECEEGGGGCTTCTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred hCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 8 9999874 267999965 79999999999999876
No 52
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.97 E-value=4.2e-28 Score=234.29 Aligned_cols=338 Identities=13% Similarity=0.106 Sum_probs=219.8
Q ss_pred CeEEEEecCcEEEe-CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCC
Q 013204 16 PLVIEKSEGSYVYD-VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASK 94 (447)
Q Consensus 16 ~~~~~~~~g~~~~d-~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 94 (447)
++++.++.+.+.++ .+|++++||.++. ++++ .+|++.+++.+++++...+ +.....++++++++++ +.+
T Consensus 8 ~~~~~~g~~~~~~~~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~y------~~~~~~~l~~~la~~~-~~~ 77 (361)
T 3ftb_A 8 GDLMIHGGDIYTEGVFKGRELLDYSSNI--NPLG-IPKSFLNNIDEGIKNLGVY------PDVNYRRLNKSIENYL-KLK 77 (361)
T ss_dssp --------------------CEETTCCC--CTTC-SCHHHHTTHHHHHHGGGSC------CCTTCHHHHHHHHHHH-TCC
T ss_pred CccccCCCCHHHHhhcCCCCEEEecCCC--CCCC-CCHHHHHHHHHHHHHhcCC------CCccHHHHHHHHHHHh-CCC
Confidence 34555555544444 4899999998885 4566 6899999999998763222 3344578888888887 346
Q ss_pred CCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCccc
Q 013204 95 MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWR 174 (447)
Q Consensus 95 ~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
.+++++++||++|++.+++.+ ++|++.+++||+........+.... .++....
T Consensus 78 ~~~i~~~~g~t~al~~~~~~~------------d~vi~~~~~~~~~~~~~~~~g~~~~-------------~~~~~~~-- 130 (361)
T 3ftb_A 78 DIGIVLGNGASEIIELSISLF------------EKILIIVPSYAEYEINAKKHGVSVV-------------FSYLDEN-- 130 (361)
T ss_dssp SCEEEEESSHHHHHHHHHTTC------------SEEEEEESCCTHHHHHHHHTTCEEE-------------EEECCTT--
T ss_pred cceEEEcCCHHHHHHHHHHHc------------CcEEEecCChHHHHHHHHHcCCeEE-------------EeecCcc--
Confidence 789999999999999998854 5899999999998665544322111 1111110
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccc
Q 013204 175 YAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 254 (447)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g 254 (447)
...+ ++++++.+.. ..++++++| ++.+| ...+.+.+++|+++|++||+++|+||+|+++.+.+
T Consensus 131 -----~~~~------~~~l~~~l~~----~~~v~i~~p-~nptG-~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~ 193 (361)
T 3ftb_A 131 -----MCID------YEDIISKIDD----VDSVIIGNP-NNPNG-GLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDP 193 (361)
T ss_dssp -----SCCC------HHHHHHHTTT----CSEEEEETT-BTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCT
T ss_pred -----cCCC------HHHHHHhccC----CCEEEEeCC-CCCCC-CCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCc
Confidence 0000 2667766652 333444555 55555 45577889999999999999999999999886642
Q ss_pred cccccccCCCCCCee---eecccCCCcccceeEEE-eChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-
Q 013204 255 TMFGCDKYSIKPDLV---SFAKALSSAYMPIGAIL-VSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK- 329 (447)
Q Consensus 255 ~~~~~~~~~~~~d~v---~~sK~l~gg~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~- 329 (447)
........+..++++ ++||.++.+++++|+++ .++++++.+... ..+++.++++++++.++++..+
T Consensus 194 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~ 264 (361)
T 3ftb_A 194 SSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAK---------QNPWNINCFAEMAAINCLKDTNY 264 (361)
T ss_dssp TSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTT---------SCTTCSCHHHHHHHHHTSSCHHH
T ss_pred ccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhh---------CCCCCCCHHHHHHHHHHhcCHHH
Confidence 122223333334433 67899984448999998 899999888631 1356788999998888886311
Q ss_pred hhcHHHHHHHHHHHHHHhHhhccCCCcee-eEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---
Q 013204 330 ERNIVEQVNKIAPKFQDGVKAFSDSPIIG-EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS--- 405 (447)
Q Consensus 330 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~~-~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--- 405 (447)
-++..++++++.+++++.|+++ +.+. ...+.|.++.+.+... ....+.+.|.++||.+.++
T Consensus 265 ~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~l~~~gi~v~~g~~~ 329 (361)
T 3ftb_A 265 IEESLLWIKKERKRFIEELNKI---GFIKRVFSPHANFVLCRLENI------------SGEKLYDSLLKEDIVIRRCCNF 329 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---SSEEEEECCSSSEEEEEESSS------------CHHHHHHHHHTTTEECEECTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---CCCceecCCCCeEEEEEcCCC------------CHHHHHHHHHHCCeEEeeCccC
Confidence 1234455666666777766654 4444 5566788877777541 1456889999999999875
Q ss_pred ----CCEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 406 ----GDNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 406 ----g~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
.+.+|++++ ++++++++++.|++..+
T Consensus 330 ~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 330 IGLDDSFVRFAIK---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp TTCCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence 257999954 88899999988887654
No 53
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.97 E-value=7e-29 Score=243.21 Aligned_cols=359 Identities=13% Similarity=0.048 Sum_probs=232.7
Q ss_pred EEEEecCcEEEeCCCC-------EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhc
Q 013204 18 VIEKSEGSYVYDVNGK-------KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMF 90 (447)
Q Consensus 18 ~~~~~~g~~~~d~dg~-------~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (447)
+..++.|+++||.||+ +++||.++. ..++ .+|.+.+++.+++.+....+.. ...+....+++.+.+.+
T Consensus 9 ~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~--~~~~l~~~la~~l~~~~ 83 (399)
T 1c7n_A 9 ISRKNLGSLKWDLMYSQNPEVGNEVVPLSVAD--MEFK-NPPELIEGLKKYLDETVLGYTG--PTEEYKKTVKKWMKDRH 83 (399)
T ss_dssp CCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSS--CSSC-CCHHHHHHHHHHHHHCCCSSBC--CCHHHHHHHHHHHHHHH
T ss_pred ccccCCCccccccchhhccccCCCceeeeecC--CCCC-CCHHHHHHHHHHHhcCCCCCCC--CcHHHHHHHHHHHHHHh
Confidence 3457999999998884 789997764 4566 6899999999998653222221 12233333444443333
Q ss_pred C-cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC
Q 013204 91 T-ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC 169 (447)
Q Consensus 91 ~-~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
. +.+.+++++++||++|++.+++.+. .++++|++.+++||+........ |... ..++.
T Consensus 84 g~~~~~~~v~~t~g~~~a~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~-g~~~------------~~~~~ 142 (399)
T 1c7n_A 84 QWDIQTDWIINTAGVVPAVFNAVREFT--------KPGDGVIIITPVYYPFFMAIKNQ-ERKI------------IECEL 142 (399)
T ss_dssp CCCCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEECSSCCTHHHHHHHTT-TCEE------------EECCC
T ss_pred CCCCChhhEEEcCCHHHHHHHHHHHhc--------CCCCEEEEcCCCcHhHHHHHHHc-CCEE------------Eeccc
Confidence 2 1356789999999999999999763 23478999999999987655432 2211 11111
Q ss_pred CCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC
Q 013204 170 PHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA 249 (447)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g 249 (447)
... .+ . + ..++++|++.+.. .++++|+++..++.+|. .++.+++++|+++|++||+++|+||+|++
T Consensus 143 ~~~-----~g-~---~-~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~ 208 (399)
T 1c7n_A 143 LEK-----DG-Y---Y-TIDFQKLEKLSKD---KNNKALLFCSPHNPVGR-VWKKDELQKIKDIVLKSDLMLWSDEIHFD 208 (399)
T ss_dssp EEE-----TT-E---E-ECCHHHHHHHHTC---TTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHSSCEEEEECTTTT
T ss_pred ccC-----CC-C---E-EEcHHHHHHHhcc---CCCcEEEEcCCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEEEccccc
Confidence 000 00 0 0 0013778777752 24566666666666665 46788999999999999999999999998
Q ss_pred CCccccc-cccccC-----CCCCCeeeecccCCCcccceeEEEeC-hhHHHHhhhccCCCCccCcCCCC-CCcHHHHHHH
Q 013204 250 FGRLGTM-FGCDKY-----SIKPDLVSFAKALSSAYMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFTY-SGHPVSCAVA 321 (447)
Q Consensus 250 ~g~~g~~-~~~~~~-----~~~~d~v~~sK~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~~aa 321 (447)
+++.|.. .....+ +....+.++||.++.+++++|+++++ +++++.+... ....++ +.++++++++
T Consensus 209 ~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~a~ 281 (399)
T 1c7n_A 209 LIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKS-------RDATSGMPFTTLGYKAC 281 (399)
T ss_dssp CBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHH-------HHHTTCCCCCHHHHHHH
T ss_pred cccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHH-------HhhcccCCCCHHHHHHH
Confidence 8766642 222222 11123446899998333899999987 5688877532 122233 5688898888
Q ss_pred HHHHHHHh--hhcHHHHHHHHHHHHHHhHhh-ccCCCceeeEeeeeeE-EEEEeecCCCCCCCCCCCcchHHHHHHHHH-
Q 013204 322 IEALKIYK--ERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTGLI-LGTEFADNKSPNEPFPPEWGIGAYFGAQCE- 396 (447)
Q Consensus 322 ~a~l~~~~--~~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~- 396 (447)
.++++... -++..++++++.+++.+.|++ ++.. ..+.+.|.+ +.+.+..... ....+.+.|+
T Consensus 282 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~ 348 (399)
T 1c7n_A 282 EICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEI---KAPLIEGTYLQWIDFRALKM----------DHKAMEEFMIH 348 (399)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTS---BCCCCSBSSEEEEECGGGCC----------CHHHHHHHHHH
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCC---eEecCCceEEEEEEcccCCC----------CHHHHHHHHHH
Confidence 88886421 133455666777777777766 4322 223344444 4567654210 1445788887
Q ss_pred HcCceEEee-------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 397 KHGMLVRVS-------GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 397 ~~Gi~~~~~-------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
++||++.++ .+.+|++++ .++++|++++++|+++++++++
T Consensus 349 ~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~l~~~l~~l~~~l~~~~~ 395 (399)
T 1c7n_A 349 KAQIFFDEGYIFGDGGIGFERINLA--APSSVIQESLERLNKALKDLKN 395 (399)
T ss_dssp TTCCCCEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHHHHHC-
T ss_pred hCCEEEeCccccCCCCCCeEEEEec--cCHHHHHHHHHHHHHHHHHHHh
Confidence 689999875 257999966 4589999999999999987754
No 54
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.96 E-value=2.7e-29 Score=246.70 Aligned_cols=364 Identities=13% Similarity=0.039 Sum_probs=229.4
Q ss_pred eEEEEecCcEEEeCCCC---EEEecCCccccccCCCCCHHHHHHHHHHHhcCCc-ccccCcCCChHHHHHHHHHHHhcCc
Q 013204 17 LVIEKSEGSYVYDVNGK---KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF-YHSFWNRTTKPSLDLAKELLEMFTA 92 (447)
Q Consensus 17 ~~~~~~~g~~~~d~dg~---~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (447)
.++.+++|.++.+.+++ +++||+++.. ++++ .+|++++++.+++.+... .+....+..+...++++++.+.+..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~id~~~g~~-~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~ 97 (407)
T 3nra_A 20 EVRQSAAGLEALIRGAPIEGRPVDFSHGDV-DAHE-PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGA 97 (407)
T ss_dssp -------CCTTTCCSCCCCSCCEETTSCCT-TTSC-CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhhhHHHhhcCCCCCceeeecCcCC-CCCC-CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCC
Confidence 45677788777655555 5999988743 3455 689999999999875321 1222234556777888888877632
Q ss_pred -CCC-CeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC
Q 013204 93 -SKM-AKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 93 -~~~-~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
... +++++++||++|+..+++.+. .+++.|++.+++|++........+.... .++..
T Consensus 98 ~~~~~~~i~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~-------------~~~~~ 156 (407)
T 3nra_A 98 PVDARDGLIITPGTQGALFLAVAATV--------ARGDKVAIVQPDYFANRKLVEFFEGEMV-------------PVQLD 156 (407)
T ss_dssp CCCTTTSEEEESHHHHHHHHHHHTTC--------CTTCEEEEEESCCTHHHHHHHHTTCEEE-------------EEEBC
T ss_pred CCCCCCcEEEeCCcHHHHHHHHHHhC--------CCCCEEEEcCCcccchHHHHHHcCCEEE-------------Eeecc
Confidence 112 689999999999999998653 3457899999999987655443322111 11110
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 171 HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
.. ........ .++++|++.+.. +..+++++.| ++.+|. .++.+.+++|+++|++||+++|+||+|+++
T Consensus 157 ~~-~~~~~~~~------~d~~~l~~~l~~---~~~~v~~~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~Dea~~~~ 224 (407)
T 3nra_A 157 YV-SADETRAG------LDLTGLEEAFKA---GARVFLFSNP-NNPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRL 224 (407)
T ss_dssp CC-SSCCSSCC------BCHHHHHHHHHT---TCCEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTS
T ss_pred cc-cccCcCCC------cCHHHHHHHHhh---CCcEEEEcCC-CCCCCc-ccCHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence 00 00000000 014778887763 2333445555 566664 557889999999999999999999999988
Q ss_pred Ccccccc-ccccCC-----CCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHH
Q 013204 251 GRLGTMF-GCDKYS-----IKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEA 324 (447)
Q Consensus 251 g~~g~~~-~~~~~~-----~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~ 324 (447)
++.|..+ .....+ ...++.++||.++.+++++|++++++++++.+... ....+++.++++++++.++
T Consensus 225 ~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~ 297 (407)
T 3nra_A 225 RYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKL-------QAIVSLRAAGYSQAVLRGW 297 (407)
T ss_dssp BCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHH-------HHHHTSSSCHHHHGGGGGT
T ss_pred ccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHH-------HhhhccCCChHHHHHHHHH
Confidence 7666533 222222 12334578999984338999999999998887632 2334566678887777666
Q ss_pred HHHHh--hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCc
Q 013204 325 LKIYK--ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGM 400 (447)
Q Consensus 325 l~~~~--~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi 400 (447)
++... -++..++.+++.+++++.|+++.. +....+. |.++.+.+..... ....+.+.|++ +||
T Consensus 298 l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~gi 364 (407)
T 3nra_A 298 FDEAPGWMEDRIARHQAIRDELLHVLRGCEG---VFARTPQAGSYLFPRLPKLAV----------APAEFVKILRLQAGV 364 (407)
T ss_dssp TCCCTTHHHHHHHHHHHHHHHHHHHHHTSTT---CBCCCCSBSSEECCBCCCBSS----------CHHHHHHHHHHHHCE
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHhcCCC---ceeccCCeeEEEEEeCCCCCC----------CHHHHHHHHHHhCCE
Confidence 64210 123445666666777777766522 2222233 3555555543111 14567788865 599
Q ss_pred eEEee-------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 401 LVRVS-------GDNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 401 ~~~~~-------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
++.++ .+.+|++++ .++++|++++++|++++++++
T Consensus 365 ~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~~~~~~ 406 (407)
T 3nra_A 365 VVTPGTEFSPHTADSVRLNFS--QDHEAAVAAARRIVTLVERYR 406 (407)
T ss_dssp ECEEGGGTCTTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHHB
T ss_pred EEeCchhhCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHhh
Confidence 99874 267999966 499999999999999987653
No 55
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.96 E-value=8.3e-28 Score=237.90 Aligned_cols=358 Identities=12% Similarity=0.009 Sum_probs=225.8
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCC---cccccCcCCChHHHHHHHHHHHhcC-cCCCC-eEEEeCChhhH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP---FYHSFWNRTTKPSLDLAKELLEMFT-ASKMA-KVFFTNSGSEA 107 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~v~~~~sGseA 107 (447)
..++||.++. ..+| .+|.+.+++.+++.+.. ..+....+..+....+++.+.+.+. +.+.+ ++++++||++|
T Consensus 37 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a 113 (429)
T 1yiz_A 37 YKPLNLGQGF--PDYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEA 113 (429)
T ss_dssp HCCEECCSSS--CSSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CCEEEecCCC--CCCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHH
Confidence 3689998775 3567 68999999999987621 1111111223334445555444333 23567 89999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
++.+++.+. .++++|++.+++||+........ |.... .++..... ...+ .....+ .
T Consensus 114 ~~~~~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~------------~~~~~~~~-~~~~-~~~~~~-~ 169 (429)
T 1yiz_A 114 LYATIQGHV--------DEGDEVIIIEPFFDCYEPMVKAA-GGIPR------------FIPLKPNK-TGGT-ISSADW-V 169 (429)
T ss_dssp HHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHT-TCEEE------------EEECBCCC-SSSS-EEGGGC-B
T ss_pred HHHHHHHhc--------CCCCEEEEcCCCchhHHHHHHHc-CCEEE------------EEeCCccc-cccc-ccccCc-c
Confidence 999999873 23478999999999986554432 22111 11110000 0000 000000 0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-ccc----cC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCD----KY 262 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~----~~ 262 (447)
.++++|++.+. +++++|++++.++.+|.+ ++.+++++|.++|++||+++|+||+|+++++.|..+ .+. ..
T Consensus 170 ~d~~~l~~~l~----~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 244 (429)
T 1yiz_A 170 LDNNELEALFN----EKTKMIIINTPHNPLGKV-MDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMW 244 (429)
T ss_dssp CCHHHHHHHCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTG
T ss_pred cCHHHHHHHhc----cCceEEEECCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCc
Confidence 01366776663 356777777777777755 568899999999999999999999999887766421 121 12
Q ss_pred CCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH-----Hhhhc----H
Q 013204 263 SIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI-----YKERN----I 333 (447)
Q Consensus 263 ~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~-----~~~~~----~ 333 (447)
+..+++.++||.++.+++|+|++++++++++.+.. ..+..+++.++++++++.++|+. ...++ .
T Consensus 245 ~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 317 (429)
T 1yiz_A 245 ERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQM-------VHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSI 317 (429)
T ss_dssp GGEEEEEEHHHHHTCGGGCCEEEESCHHHHHHHHH-------HHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHH
T ss_pred CceEEEecchhccCCCCcceEEEEeCHHHHHHHHH-------HHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHH
Confidence 33344567899998434899999999999888763 22345778899999888888886 32123 3
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCC-CCCCCcchHHHHHHHHH-HcCceEEee------
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNE-PFPPEWGIGAYFGAQCE-KHGMLVRVS------ 405 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~l~-~~Gi~~~~~------ 405 (447)
.++++++.+++.+.|+++ ++.......|.++.+.+........ +..........+.++|+ ++||++.++
T Consensus 318 ~~~~~~~~~~l~~~L~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~ 394 (429)
T 1yiz_A 318 SGELMAKRDYMASFLAEV---GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSE 394 (429)
T ss_dssp HHHHHHHHHHHHHHHHHH---TCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCG
T ss_pred HHHHHHHHHHHHHHHHhC---CCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCC
Confidence 455666667777777665 2221122236677777754210000 00000012445777776 789999864
Q ss_pred ------CCEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 406 ------GDNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 406 ------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
.+.+|++++ .++++|++++++|+++++
T Consensus 395 ~~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 395 PNKHLGEDFVRYCFF--KKDENLQKAAEILRKWKG 427 (429)
T ss_dssp GGGGGTTTEEEEECC--SCHHHHHHHHHHHHHHSC
T ss_pred cccCCCCCeEEEEec--CCHHHHHHHHHHHHHhcc
Confidence 357999976 599999999999988764
No 56
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.96 E-value=2.9e-28 Score=238.46 Aligned_cols=352 Identities=12% Similarity=0.037 Sum_probs=230.7
Q ss_pred CCeEEEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc--
Q 013204 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-- 92 (447)
Q Consensus 15 ~~~~~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-- 92 (447)
.|+....+.+..++|.+|+++|||.++. ..++ .+|.+.+++.++++....+ +...+..+...++++.+.+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y-~~~~g~~~lr~~la~~l~~~~g~~~ 87 (396)
T 3jtx_A 12 YPFARLHEAMQGISAPEGMEAVPLHIGE--PKHP-TPKVITDALTASLHELEKY-PLTAGLPELRQACANWLKRRYDGLT 87 (396)
T ss_dssp CHHHHHHHHTTTCCCCTTCCCEECSCCS--CCSC-CCHHHHHHHHHTGGGGGSC-CCTTCCHHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHhhhhccCCCeEEeCCcC--CCCC-CCHHHHHHHHHHhhhccCC-CCCCCcHHHHHHHHHHHHHhcCCCC
Confidence 3444445667777889999999998886 4455 6899999999988643222 22223445566666666665432
Q ss_pred CCCC-eEEEeCChhhHHHHHHHHHHHHHHhcCCCC----cceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceec
Q 013204 93 SKMA-KVFFTNSGSEANDTQVKLVWYYNNALGRPN----KKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHT 167 (447)
Q Consensus 93 ~~~~-~v~~~~sGseA~~~Al~~~~~~~~~~~~~~----~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (447)
..++ ++++++||++|++.+++.+. +++ ++.|++.+++||+........+.... .+
T Consensus 88 ~~~~~~i~~t~g~~~al~~~~~~~~-------~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~-------------~v 147 (396)
T 3jtx_A 88 VDADNEILPVLGSREALFSFVQTVL-------NPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIH-------------FA 147 (396)
T ss_dssp CCTTTSEEEESSHHHHHHHHHHHHC-------CC---CCCCEEEEEESCCHHHHHHHHHTTCEEE-------------EE
T ss_pred CCCCCeEEEcCCcHHHHHHHHHHHh-------CCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEE-------------Ee
Confidence 3467 99999999999999999773 122 26899999999998765544332211 11
Q ss_pred CCCC-cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehh
Q 013204 168 DCPH-YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEV 246 (447)
Q Consensus 168 ~~~~-~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv 246 (447)
+.+. .+. .+ ++++++.+.. ++++|+++..++.+|. ..+.+.+++|.++|++||+++|+||+
T Consensus 148 ~~~~~g~~-----~d--------~~~l~~~~~~----~~~~v~l~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~ 209 (396)
T 3jtx_A 148 NCPAPSFN-----PD--------WRSISEEVWK----RTKLVFVCSPNNPSGS-VLDLDGWKEVFDLQDKYGFIIASDEC 209 (396)
T ss_dssp ECCTTTCC-----CC--------GGGSCHHHHH----TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHCCEEEEECT
T ss_pred ecCCCCCc-----cC--------HHHHHHhhcc----CcEEEEEECCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEEcc
Confidence 1100 000 00 2556666653 3455555455566664 45677799999999999999999999
Q ss_pred hcCCCccc-cccccc--------cCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHH
Q 013204 247 ICAFGRLG-TMFGCD--------KYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVS 317 (447)
Q Consensus 247 ~~g~g~~g-~~~~~~--------~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 317 (447)
|+++.+.| .+.... ..+..+++.++||.++.+++++|++++++++++.+... ....+++.++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 282 (396)
T 3jtx_A 210 YSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLY-------RTYHGSAMSIPV 282 (396)
T ss_dssp TTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHH-------HHHHTCCCCHHH
T ss_pred ccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHH-------HhhcccCCCHHH
Confidence 99887766 332221 13333456679998776558999999999998888632 233467788999
Q ss_pred HHHHHHHHHHHh-hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH
Q 013204 318 CAVAIEALKIYK-ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE 396 (447)
Q Consensus 318 ~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (447)
++++.++++..+ -++..++++++.+.+.+.|+++ ..+. ....|.++.+.+.... ...+.+.|+
T Consensus 283 ~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~--~~~~~~~~~~~~~~~~------------~~~~~~~l~ 346 (396)
T 3jtx_A 283 QRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQV--FDVK--LPDASFYIWLKVPDGD------------DLAFARNLW 346 (396)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTT--SCCC--CCSSSSEEEEECTTSC------------HHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc--CCcc--CCCeeEEEEEECCCCC------------HHHHHHHHH
Confidence 998888886311 1233455555556666666553 1111 1223556667765311 445777775
Q ss_pred -HcCceEEee-------------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 397 -KHGMLVRVS-------------GDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 397 -~~Gi~~~~~-------------g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
++||++.++ .+.+|+++. .++++|++++++|++++
T Consensus 347 ~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 347 QKAAIQVLPGRFLARDTEQGNPGEGYVRIALV--ADVATCVKAAEDIVSLY 395 (396)
T ss_dssp HHHCEECEEGGGGCCCCTTCCTTTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred HHCCEEEeCChHhCCcccccCCCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 569999874 257999955 49999999999998764
No 57
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.96 E-value=9.9e-28 Score=232.62 Aligned_cols=327 Identities=13% Similarity=0.118 Sum_probs=218.8
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~ 109 (447)
+|++++||.++. ..+|+ +|.+.+++.+++++....+....+..+....+++.+...+. ..+++++++++||++|++
T Consensus 27 ~g~~~i~l~~~~--~~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 103 (370)
T 2z61_A 27 EGKKVIHLEIGE--PDFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF 103 (370)
T ss_dssp TTCCCEECCCCS--CSSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred cCCCEEEccCCC--CCCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence 478899998775 35776 89999999999876322222111223333444444443321 145678999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.+++.+. .++++|++.+++||+........+... ..++ . +
T Consensus 104 ~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~-------------~~v~-~------------------d 143 (370)
T 2z61_A 104 FALSSII--------DDGDEVLIQNPCYPCYKNFIRFLGAKP-------------VFCD-F------------------T 143 (370)
T ss_dssp HHHHHHC--------CTTCEEEEESSCCTHHHHHHHHTTCEE-------------EEEC-S------------------S
T ss_pred HHHHHhc--------CCCCEEEEeCCCchhHHHHHHHcCCEE-------------EEeC-C------------------C
Confidence 9999773 234789999999999865544322111 1111 0 1
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccC-CC-CCC
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKY-SI-KPD 267 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~-~~-~~d 267 (447)
+++|++.+. +++++|++++.++.+|.+.+ ++ |.++|++||+++|+||+|+++.+.|.......+ +. ..|
T Consensus 144 ~~~l~~~l~----~~~~~v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 214 (370)
T 2z61_A 144 VESLEEALS----DKTKAIIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKT 214 (370)
T ss_dssp HHHHHHHCC----SSEEEEEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSE
T ss_pred HHHHHHhcc----cCceEEEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcE
Confidence 377777664 25666777777777777766 44 999999999999999999987665543222222 12 123
Q ss_pred e--eeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH-Hh--hhcHHHHHHHHHH
Q 013204 268 L--VSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI-YK--ERNIVEQVNKIAP 342 (447)
Q Consensus 268 ~--v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~-~~--~~~~~~~~~~~~~ 342 (447)
+ .++||.++.+++++|++++++++++.+... ....+++.+++++.++.++|+. .. -++..++++++.+
T Consensus 215 i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (370)
T 2z61_A 215 ILINGFSKLYAMTGWRIGYVISNDEIIEAILKL-------QQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRR 287 (370)
T ss_dssp EEEEESTTTTTCGGGCCEEEECCHHHHHHHHHH-------HHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhccCCccceEEEEEECHHHHHHHHHH-------HhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 3 368999974338999999999998887632 2233567788998888888864 22 1345677777888
Q ss_pred HHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee-------CCEEEEecC
Q 013204 343 KFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS-------GDNIMMSPP 414 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------g~~iR~~~~ 414 (447)
++.+.|+++ +..+.. ...|.++.+.+.. . ...+.+.|+ ++||.+.++ .+.+|++++
T Consensus 288 ~l~~~L~~~-g~~~~~--~~~~~~~~~~~~~-~------------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~ 351 (370)
T 2z61_A 288 LVLKYVKDF-GWEVNN--PIGAYYVFPNIGE-D------------GREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA 351 (370)
T ss_dssp HHHHHHHHT-TCBCCC--CCBTTEECCBCSS-C------------HHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC
T ss_pred HHHHHHHHc-CCeecC--CCcceEEEEecCC-C------------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe
Confidence 888888775 322211 1124444444432 1 345788887 789999875 357999976
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 013204 415 FIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 415 ~~~t~e~i~~~~~~l~~~l~ 434 (447)
+++++|++++++|+++++
T Consensus 352 --~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 352 --NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp --SCHHHHHHHHHHHHHHHC
T ss_pred --CCHHHHHHHHHHHHHHHh
Confidence 799999999999998764
No 58
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.96 E-value=3.1e-27 Score=232.12 Aligned_cols=345 Identities=17% Similarity=0.128 Sum_probs=230.6
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhc----C-cCCCCeEEEeCChh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMF----T-ASKMAKVFFTNSGS 105 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~-~~~~~~v~~~~sGs 105 (447)
.|+.++||.++... ..|+.+|.+.+++.+++++.... .. ........++.+.+++++ . +.+.+++++++||+
T Consensus 32 ~g~~~idl~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~-~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t 108 (407)
T 2zc0_A 32 KGVKLISLAAGDPD-PELIPRAVLGEIAKEVLEKEPKS-VM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGT 108 (407)
T ss_dssp SSCCCEECCSCCCC-TTTSCHHHHHHHHHHHHHHCGGG-GS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHH
T ss_pred CCCceEeCCCCCCC-chhCCHHHHHHHHHHHHhhcccc-cc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHH
Confidence 37789999887643 45778899999999998763210 00 111122344555555544 2 13567999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHH
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEY 185 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (447)
+|++.+++.++ ..+++|++.+++||+....... .|... ..++.... +
T Consensus 109 ~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~-~g~~~------------~~v~~~~~------~------ 155 (407)
T 2zc0_A 109 GALDLLGRVLI--------DPGDVVITENPSYINTLLAFEQ-LGAKI------------EGVPVDND------G------ 155 (407)
T ss_dssp HHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHT-TTCEE------------EEEEEETT------E------
T ss_pred HHHHHHHHHhc--------CCCCEEEEeCCChHHHHHHHHH-cCCEE------------EEcccCCC------C------
Confidence 99999999874 2347899999999997654433 22211 11111000 0
Q ss_pred HHHHHHHHHHHHHhh--CCCcEEEE-EEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc-ccccc
Q 013204 186 STRLANNLEDLILKE--GPETIAAF-IAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM-FGCDK 261 (447)
Q Consensus 186 ~~~~~~~le~~l~~~--~~~~~a~v-i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~-~~~~~ 261 (447)
.++++|++.+... ...++++| +++..++.+|.+ .+.+++++|.++|++||+++|+||+|+++.+.|.. .....
T Consensus 156 --~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 232 (407)
T 2zc0_A 156 --MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVT-MSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKA 232 (407)
T ss_dssp --ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGG
T ss_pred --CCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhh
Confidence 1147777777521 11246666 456667777754 56889999999999999999999999988665542 22222
Q ss_pred CCCC---CCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH--h---hhcH
Q 013204 262 YSIK---PDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY--K---ERNI 333 (447)
Q Consensus 262 ~~~~---~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~--~---~~~~ 333 (447)
++.. .++.++||.++.| +++|++++++++++.+... ....+++.+++++.++.++++.. + -++.
T Consensus 233 ~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (407)
T 2zc0_A 233 LDNEGRVIVAGTLSKVLGTG-FRIGWIIAEGEILKKVLMQ-------KQPIDFCAPAISQYIALEYLKRGYFEKYHLEGA 304 (407)
T ss_dssp GCSSCCEEEEEESTTTTCTT-SCCEEEECCHHHHHHHHHH-------HTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTH
T ss_pred cCCCCCEEEEcccccccCCC-cceEEEecCHHHHHHHHHH-------HHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHH
Confidence 2222 2455789999955 8999999999998887632 23345667888888888888743 1 2345
Q ss_pred HHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee------
Q 013204 334 VEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS------ 405 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~------ 405 (447)
.++++++.+++.+.|++. ....+. .+..|.++.+.+.... ....+.+.|+++ ||++.++
T Consensus 305 ~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~~~~~~~~~~~~~-----------~~~~l~~~l~~~~gi~v~~g~~~~~~ 371 (407)
T 2zc0_A 305 LLGYKEKRDIMLKALENHLPNAEFT--KPIAGMFVMFFLPEGA-----------DGISFANELMEREGVVVVPGKPFYTD 371 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCBC--CCSBSSEEEEECSTTC-----------CHHHHHHHHHHHTCEECBCSGGGCSS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEe--cCCCcEEEEEEcCCCC-----------CHHHHHHHHHHhCCeEEECchhccCC
Confidence 667777888888888763 332221 1234567777765311 145688889888 9998864
Q ss_pred ---CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 406 ---GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 406 ---g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+.+|++++.. ++++|++++++|+++++++
T Consensus 372 ~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 372 ESGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp SCCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 25799998766 8999999999999998765
No 59
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.96 E-value=1.5e-27 Score=229.93 Aligned_cols=337 Identities=14% Similarity=0.095 Sum_probs=231.2
Q ss_pred ecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEe
Q 013204 22 SEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFT 101 (447)
Q Consensus 22 ~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~ 101 (447)
.+|.++++.+|++++||+++. ++++ .+|++++++.+++.+...+ +.....++.+++++++. .+.++++++
T Consensus 5 ~~~~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y------~~~~~~~l~~~la~~~~-~~~~~i~~~ 74 (354)
T 3ly1_A 5 PESAAFTAPSTDNPIRINFNE--NPLG-MSPKAQAAARDAVVKANRY------AKNEILMLGNKLAAHHQ-VEAPSILLT 74 (354)
T ss_dssp ----CCCCCCSSSCEECSSCC--CSSC-CCHHHHHHHHHTGGGTTSC------CHHHHHHHHHHHHHHTT-SCGGGEEEE
T ss_pred cccccccCCCCCceEEccCCC--CCCC-CCHHHHHHHHHHHhhCcCC------CCCchHHHHHHHHHHhC-CChHHEEEe
Confidence 356778889999999998875 5666 7899999999988753222 34567789999999873 457799999
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCC
Q 013204 102 NSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 181 (447)
Q Consensus 102 ~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (447)
+||++|++.+++.+. ..+++|++.+++|++........+... ..++....+. .
T Consensus 75 ~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~-------------~~~~~~~~~~-----~- 127 (354)
T 3ly1_A 75 AGSSEGIRAAIEAYA--------SLEAQLVIPELTYGDGEHFAKIAGMKV-------------TKVKMLDNWA-----F- 127 (354)
T ss_dssp SHHHHHHHHHHHHHC--------CTTCEEEEESSSCTHHHHHHHHTTCEE-------------EEECCCTTSC-----C-
T ss_pred CChHHHHHHHHHHHh--------CCCCeEEECCCCchHHHHHHHHcCCEE-------------EEecCCCCCC-----C-
Confidence 999999999999763 234789999999998865544332211 1112111000 0
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc-cc
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG-CD 260 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~~ 260 (447)
++++|++.+.+. .++++|+++..++.+|.+. +.+.+.+|+++| +||+++|+||+|+++...+.... ..
T Consensus 128 -------d~~~l~~~l~~~--~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~ 196 (354)
T 3ly1_A 128 -------DIEGLKAAVAAY--SGPSIVYLVNPNNPTGTIT-PADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISP 196 (354)
T ss_dssp -------CHHHHHHHHHTC--SSCEEEEEESSCTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHH
T ss_pred -------CHHHHHHHhccC--CCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHH
Confidence 147788877631 2355666656666666544 666677777777 79999999999998876653211 11
Q ss_pred ---cC-CCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHH
Q 013204 261 ---KY-SIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVE 335 (447)
Q Consensus 261 ---~~-~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~ 335 (447)
.. +....+.++||.++.+++++|++++++++++.+... . ..++.++++++++.++|+..+ -++..+
T Consensus 197 ~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 267 (354)
T 3ly1_A 197 MITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRY-------V--AGEKINFSGVDAALASMNDSAFITYSKK 267 (354)
T ss_dssp HHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGG-------T--TCSCCCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHHHHHh-------c--CCCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence 11 222334468999973338999999999999988642 1 236778899988888876432 134556
Q ss_pred HHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE----eeCCEEEE
Q 013204 336 QVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR----VSGDNIMM 411 (447)
Q Consensus 336 ~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~g~~iR~ 411 (447)
+++++.+++++.|+++ .... .++.|.++.+.+.. . ...+.+.|.++||++. ...+.+|+
T Consensus 268 ~~~~~~~~l~~~l~~~-~~~~---~~~~~~~~~~~~~~-~------------~~~~~~~l~~~gi~v~g~~~~~~~~iRi 330 (354)
T 3ly1_A 268 SNDVSRQILLKALEDL-KLPY---LPSEGNFVFHQLVV-P------------LKDYQTHMADAGVLIGRAFPPADNWCRI 330 (354)
T ss_dssp HHHHHHHHHHHHHHHH-TCCB---CCCCSSEEEEECSS-C------------HHHHHHHHHHTTEECCCCCTTCTTEEEE
T ss_pred HHHHHHHHHHHHHHHC-CCeE---CCCCceEEEEECCC-C------------HHHHHHHHHHCCEEEeecCCCCCCEEEE
Confidence 7777777888888776 3222 24567777777653 1 4568888999999987 11367999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+. .+++++++++++|++++++
T Consensus 331 s~---~~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 331 SL---GTPQEMQWVADTMREFRKK 351 (354)
T ss_dssp EC---CCHHHHHHHHHHHHHHHHT
T ss_pred Ec---CCHHHHHHHHHHHHHHHHh
Confidence 94 3899999999999988753
No 60
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.96 E-value=1.7e-27 Score=232.75 Aligned_cols=342 Identities=13% Similarity=0.124 Sum_probs=217.9
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~ 108 (447)
.+|++++||.++. ..++ .+|++.+++.+++.+....+....+..+....+++.+.+.+. +.+.+++++++||++|+
T Consensus 28 ~~g~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al 104 (391)
T 3h14_A 28 EAGRRIIHMEVGQ--PGTG-APRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGF 104 (391)
T ss_dssp HTTCCCEECCCSS--CSSC-SCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred hcCCCeEEccCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHH
Confidence 4789999999886 4455 389999999998876322222111223344444444444332 24678999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
+.+++.+. ..+++|++.+++|++........+... ..++......+. .
T Consensus 105 ~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~-------------~~v~~~~~~~~~---~-------- 152 (391)
T 3h14_A 105 LLAFTALF--------DSGDRVGIGAPGYPSYRQILRALGLVP-------------VDLPTAPENRLQ---P-------- 152 (391)
T ss_dssp HHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHTTCEE-------------EEEECCGGGTTS---C--------
T ss_pred HHHHHHhc--------CCCCEEEEcCCCCccHHHHHHHcCCEE-------------EEeecCcccCCC---C--------
Confidence 99999763 334789999999998865444322211 111111100000 0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCe
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDL 268 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~ 268 (447)
+++++++. ++++|+++..++.+|. ..+.+.+++|.++|++||+++|+||+|+++.+.|....... ..+++
T Consensus 153 d~~~l~~~-------~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~--~~~~~ 222 (391)
T 3h14_A 153 VPADFAGL-------DLAGLMVASPANPTGT-MLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALE--LTDEC 222 (391)
T ss_dssp CHHHHTTS-------CCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGG--TCSSS
T ss_pred CHHHHHhc-------CCeEEEECCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhh--cCCCE
Confidence 02445443 3445555565666665 45677899999999999999999999998876664322211 22333
Q ss_pred e---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHH
Q 013204 269 V---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKF 344 (447)
Q Consensus 269 v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l 344 (447)
+ ++||.++.+++++|++++++++++.+... ....+++.+++++.++.++++..+ -++..++++++.+++
T Consensus 223 i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l 295 (391)
T 3h14_A 223 YVINSFSKYFSMTGWRVGWMVVPEDQVRVVERI-------AQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLM 295 (391)
T ss_dssp EEEEESSSTTCCTTSCCEEEECCGGGHHHHHHH-------HHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEechhccCCccceeEEEEeCHHHHHHHHHH-------HhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 3 68999973338999999999998887632 233567788899888888876111 133456666677777
Q ss_pred HHhHhhccCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee--------CCEEEEecC
Q 013204 345 QDGVKAFSDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS--------GDNIMMSPP 414 (447)
Q Consensus 345 ~~~L~~l~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~--------g~~iR~~~~ 414 (447)
.+.|+++ +......+.| .++.+.+..... ....+.+.|+++ ||.+.++ .+.+|++++
T Consensus 296 ~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~ 362 (391)
T 3h14_A 296 LERLPKA---GFTRIAPPDGAFYVYADVSDLTD----------DSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYA 362 (391)
T ss_dssp HHHHHHH---TCCCBCCCCBTTEEEEECTTTCS----------CHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECC
T ss_pred HHHHHHc---CCCcccCCCeeEEEEEecCccCC----------CHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEec
Confidence 7777765 2222223333 455566643111 145677887775 9999874 247999965
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 415 FIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 415 ~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.++++|++++++|++++++..+
T Consensus 363 --~~~~~i~~~l~~l~~~~~~~~~ 384 (391)
T 3h14_A 363 --RATADIEEGLDRLEAFMQARGE 384 (391)
T ss_dssp --SCHHHHHHHHHHHHHHHHHC--
T ss_pred --CCHHHHHHHHHHHHHHHHHhcc
Confidence 4899999999999999876543
No 61
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.96 E-value=2.8e-27 Score=230.90 Aligned_cols=345 Identities=11% Similarity=0.044 Sum_probs=226.2
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~ 108 (447)
.+|++++||.++.. .++ .+|.+.+++.+++++....+....+..+....+++.+.+.+. ..+.+++++++||++|+
T Consensus 27 ~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~ 103 (388)
T 1j32_A 27 AEGIDVCSFSAGEP--DFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI 103 (388)
T ss_dssp TTTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEECCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHH
Confidence 36889999988753 566 689999999998865322222112233444455555544432 13567899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
+.+++.+. .++++|++.+++||+....... .|... ..++......+. .
T Consensus 104 ~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~-~g~~~------------~~v~~~~~~~~~-----------~ 151 (388)
T 1j32_A 104 FNLMLAMI--------EPGDEVIIPAPFWVSYPEMVKL-AEGTP------------VILPTTVETQFK-----------V 151 (388)
T ss_dssp HHHHHHHC--------CTTCEEEEESSCCTHHHHHHHH-TTCEE------------EEECCCGGGTTC-----------C
T ss_pred HHHHHHhc--------CCCCEEEEcCCCChhHHHHHHH-cCCEE------------EEecCCcccCCC-----------C
Confidence 99999773 2347899999999997654432 22211 112211000000 0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-cccc-----C
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDK-----Y 262 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~-----~ 262 (447)
++++|++.+. +++++|++++.++.+|.+ .+.+.+++|.++|++||+++|+||+|+++.+.|..+ .... +
T Consensus 152 d~~~l~~~l~----~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 226 (388)
T 1j32_A 152 SPEQIRQAIT----PKTKLLVFNTPSNPTGMV-YTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAY 226 (388)
T ss_dssp CHHHHHHHCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred CHHHHHHhcC----cCceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHcccccc
Confidence 1367777664 246677777767777755 467899999999999999999999999886655321 1111 2
Q ss_pred CCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHH
Q 013204 263 SIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKI 340 (447)
Q Consensus 263 ~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~ 340 (447)
+..+++.++||.++.+++|+|++++++++++.+.. .....+++.+++++.++.++|+... -++..++++++
T Consensus 227 ~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 299 (388)
T 1j32_A 227 ERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATK-------IQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAER 299 (388)
T ss_dssp HTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHH-------HHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHH
T ss_pred CCEEEEeechhccCCcccceEEEEeCHHHHHHHHH-------HHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 23345567899997444899999999999888763 2234567778888888888886321 13455677777
Q ss_pred HHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEee-----CCEEEEec
Q 013204 341 APKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVS-----GDNIMMSP 413 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-----g~~iR~~~ 413 (447)
.+++.+.|+++.+..+ ..+. +.++.+.+..... ....+.+.|++ +||.+.++ .+.+|+++
T Consensus 300 ~~~l~~~L~~~~g~~~---~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~ 366 (388)
T 1j32_A 300 RRYMLDALNAMPGLEC---PKPDGAFYMFPSIAKTGR----------SSLDFCSELLDQHQVATVPGAAFGADDCIRLSY 366 (388)
T ss_dssp HHHHHHHHHTCTTCBC---CCCCBTTEECCBCGGGTC----------CHHHHHHHHHHHHCEECEEGGGGTCTTBEEEEC
T ss_pred HHHHHHHHhhCCCCcc---cCCCeeEEEEEecCCCCC----------CHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEe
Confidence 7888888876532222 2223 3333444432110 14567888876 79999875 36799996
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 013204 414 PFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 414 ~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+ +++++|++++++|+++++++
T Consensus 367 ~--~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 367 A--TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp C--SCHHHHHHHHHHHHHHHHHH
T ss_pred c--CCHHHHHHHHHHHHHHHHHh
Confidence 5 79999999999999988654
No 62
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.96 E-value=2.1e-27 Score=229.87 Aligned_cols=329 Identities=13% Similarity=0.131 Sum_probs=216.9
Q ss_pred eCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHH
Q 013204 29 DVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 29 d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~ 108 (447)
+.||++++||.++. +++| .+|++.+++.+++.+...+ +.....++.+++++++ +.+.+++++++||++|+
T Consensus 20 ~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~y------~~~~~~~l~~~la~~~-~~~~~~v~~~~g~~~al 89 (364)
T 1lc5_A 20 GISPDQLLDFSANI--NPLG-MPVSVKRALIDNLDCIERY------PDADYFHLHQALARHH-QVPASWILAGNGETESI 89 (364)
T ss_dssp TSCGGGSEECSSCC--CTTC-CCHHHHHHHHHTGGGGGSC------CCTTCHHHHHHHHHHH-TSCGGGEEEESSHHHHH
T ss_pred CCCccceEEecccc--CCCC-CCHHHHHHHHHHHHHhhcC------CCCCHHHHHHHHHHHH-CcCHHHEEECCCHHHHH
Confidence 35788999998875 5677 7899999999988652111 2224567888888887 34567899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
+.+++.+ ++ ++|++.+++||++.......+. .. ..++......+..
T Consensus 90 ~~~~~~~---------~g-d~vl~~~p~y~~~~~~~~~~g~-~~------------~~v~~~~~~~~~~----------- 135 (364)
T 1lc5_A 90 FTVASGL---------KP-RRAMIVTPGFAEYGRALAQSGC-EI------------RRWSLREADGWQL----------- 135 (364)
T ss_dssp HHHHHHH---------CC-SEEEEEESCCTHHHHHHHHTTC-EE------------EEEECCGGGTTCC-----------
T ss_pred HHHHHHc---------CC-CeEEEeCCCcHHHHHHHHHcCC-eE------------EEEeCCcccccch-----------
Confidence 9999876 23 6899999999998765544322 11 1111110000000
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCC---CC
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYS---IK 265 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~---~~ 265 (447)
+++++....++..++++++|. +.+|. ..+.+++++|.++|++||+++|+||+|+++++.+... ....+ ..
T Consensus 136 ----l~~~~~~~~~~~~~v~i~~p~-nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~ 208 (364)
T 1lc5_A 136 ----TDAILEALTPDLDCLFLCTPN-NPTGL-LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGF-IPALKDNPHI 208 (364)
T ss_dssp ----CTTHHHHCCTTCCEEEEESSC-TTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCS-GGGCTTCTTE
T ss_pred ----hHHHHHhccCCCCEEEEeCCC-CCCCC-CCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccch-hhHhccCCCE
Confidence 111222222233334556664 44554 4678999999999999999999999999876543221 22222 22
Q ss_pred CCeeeecccCCCcccceeEEE-eChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHH
Q 013204 266 PDLVSFAKALSSAYMPIGAIL-VSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPK 343 (447)
Q Consensus 266 ~d~v~~sK~l~gg~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~ 343 (447)
..+.++||.++.+++|+|+++ +++++++.+... ..+++.++++++++.++|+..+ -++..++++++.++
T Consensus 209 i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 279 (364)
T 1lc5_A 209 WVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQ---------QMPWSVNALAALAGEVALQDSAWQQATWHWLREEGAR 279 (364)
T ss_dssp EEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHH---------SCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECchhhcCCccceEEEEECCHHHHHHHHHh---------CCCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 234478999984338999999 999998888642 1356788999988888876411 12334555566666
Q ss_pred HHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------CCEEEEecCCC
Q 013204 344 FQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------GDNIMMSPPFI 416 (447)
Q Consensus 344 l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------g~~iR~~~~~~ 416 (447)
+.+.|+++ +.+...++.|.++.+.+... . ..+.+.|+++||.+.++ .+.+|++.
T Consensus 280 l~~~L~~~---~~~~~~~~~g~~~~~~~~~~--~-----------~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~--- 340 (364)
T 1lc5_A 280 FYQALCQL---PLLTVYPGRANYLLLRCERE--D-----------IDLQRRLLTQRILIRSCANYPGLDSRYYRVAI--- 340 (364)
T ss_dssp HHHHHHTS---TTEEECCCSSSEEEEEESCT--T-----------CCHHHHHHTTTEECEECTTSTTCCTTEEEEEC---
T ss_pred HHHHHhcC---CCCEECCCCCeEEEEECCCc--H-----------HHHHHHHHHCCcEEeeCcccCCCCCCEEEEEe---
Confidence 66666654 33333455677777776531 1 12778888999999875 25799993
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 013204 417 MSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 417 ~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+++++++++++|++.++++
T Consensus 341 ~~~~~~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 341 RSAAQNERLLAALRNVLTGI 360 (364)
T ss_dssp CCHHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHHhhcc
Confidence 47899999999999887765
No 63
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.96 E-value=5.5e-27 Score=227.08 Aligned_cols=328 Identities=13% Similarity=0.079 Sum_probs=227.4
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
.+.++||+++. ++++ .+|++.+++.+++.+.... ..+.....++++++++++...+.+++++++||++|++.+
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~----~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~ 101 (367)
T 3euc_A 29 SHGLVKLDAME--NPYR-LPPALRSELAARLGEVALN----RYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISML 101 (367)
T ss_dssp CTTCEECCSSC--CCCC-CCHHHHHHHHHHHHHHHTT----CSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHH
T ss_pred CCCeeEccCCC--CCCC-CCHHHHHHHHHHhhhhhhh----cCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHH
Confidence 46799998875 5565 7899999999988742110 112335678999999887422567999999999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
++.+. ..+++|++.+++|+++.......+... ..++....+. . +++
T Consensus 102 ~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~-------------~~v~~~~~~~-----~--------d~~ 147 (367)
T 3euc_A 102 ALAAA--------RPGAKVMAPVPGFVMYAMSAQFAGLEF-------------VGVPLRADFT-----L--------DRG 147 (367)
T ss_dssp HHHTC--------CTTCEEEEEESCSCCSCHHHHTTTCEE-------------EEEECCTTSC-----C--------CHH
T ss_pred HHHHc--------CCCCEEEEcCCCHHHHHHHHHHcCCeE-------------EEecCCCCCC-----C--------CHH
Confidence 99763 234789999999999865544322211 1122111100 0 147
Q ss_pred HHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhc--CCEEEEehhhcCCCccccccccccCCCCCCee
Q 013204 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKY--DILFIADEVICAFGRLGTMFGCDKYSIKPDLV 269 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~--g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v 269 (447)
++++.+... ++++|+++..++.+|.+ .+.+.+++|.++|++| |+++|+||+|++|+..+........+...++.
T Consensus 148 ~l~~~l~~~---~~~~v~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~ 223 (367)
T 3euc_A 148 AMLAAMAEH---QPAIVYLAYPNNPTGNL-FDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMR 223 (367)
T ss_dssp HHHHHHHHH---CCSEEEEESSCTTTCCC-CCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEE
T ss_pred HHHHHhhcc---CCCEEEEcCCCCCCCCC-CCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEe
Confidence 788877642 34566666666666654 4678899999999999 99999999999886443322333333334556
Q ss_pred eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHhH
Q 013204 270 SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-RNIVEQVNKIAPKFQDGV 348 (447)
Q Consensus 270 ~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~l~~~L 348 (447)
++||. +.+++++|++++++++++.+... ..+++.++++++++.++|+..+. ++..++++++.+++.+.|
T Consensus 224 s~sK~-~~~G~r~G~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l 293 (367)
T 3euc_A 224 TVSKL-GLAGIRLGYVAGDPQWLEQLDKV---------RPPYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGM 293 (367)
T ss_dssp ECCCT-TSCSCCEEEEEECHHHHHHHGGG---------CCSSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhh-cccccCceeeeeCHHHHHHHHHh---------CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 78998 54448999999999999888632 13567889999998888875221 344566666777777777
Q ss_pred hhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-------CEEEEecCCCCCHHH
Q 013204 349 KAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------DNIMMSPPFIMSPEE 421 (447)
Q Consensus 349 ~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-------~~iR~~~~~~~t~e~ 421 (447)
+++ +.+....+.|.++.+.+. . ...+.+.|.++||++.++. +.+|++.. ++++
T Consensus 294 ~~~---~g~~~~~~~~~~~~~~~~--~------------~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~ 353 (367)
T 3euc_A 294 AAH---GGVTVFPSAANFLLARVP--D------------AAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS---TPEE 353 (367)
T ss_dssp HTS---TTCEECCCSSSEEEEECS--C------------HHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC---CHHH
T ss_pred HhC---CCcEECCCCCeEEEEECC--C------------HHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC---CHHH
Confidence 665 223334556777777664 1 3457888999999998753 57999943 9999
Q ss_pred HHHHHHHHHHHHH
Q 013204 422 VDELISKYGKALK 434 (447)
Q Consensus 422 i~~~~~~l~~~l~ 434 (447)
+++++++|+++++
T Consensus 354 i~~~~~~l~~~l~ 366 (367)
T 3euc_A 354 NAQFLEAFAASLQ 366 (367)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988763
No 64
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.96 E-value=9.5e-28 Score=233.26 Aligned_cols=333 Identities=14% Similarity=0.072 Sum_probs=219.5
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCC-hHHHHHHHHHHHhc----Cc-CCCC-eEEEeC
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTT-KPSLDLAKELLEMF----TA-SKMA-KVFFTN 102 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~----~~-~~~~-~v~~~~ 102 (447)
.+|++++||.++. ..+| .+|.+.+++.+++.+... + ..+. ....++.+.+++++ .. ..++ ++++++
T Consensus 22 ~~g~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~-~---~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~ 94 (376)
T 2dou_A 22 ERGVGLIDLSIGS--TDLP-PPEAPLKALAEALNDPTT-Y---GYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALI 94 (376)
T ss_dssp HTTCCCEECSSCC--CCCC-CCHHHHHHHHHHTTCGGG-S---SCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEES
T ss_pred ccCCCEEeccCCC--CCCC-CCHHHHHHHHHHHhCCCc-C---CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcC
Confidence 4688999998875 3677 589999999998864211 1 1122 34566777777665 32 1334 899999
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCCh
Q 013204 103 SGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETE 182 (447)
Q Consensus 103 sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (447)
||++|++.+++.+. .++++|++.+++||+........+.... .++.++.+. .+
T Consensus 95 g~~~a~~~~~~~l~--------~~gd~vl~~~p~y~~~~~~~~~~g~~~~-------------~~~~~~~~~-----~d- 147 (376)
T 2dou_A 95 GSQEGLAHLLLALT--------EPEDLLLLPEVAYPSYFGAARVASLRTF-------------LIPLREDGL-----AD- 147 (376)
T ss_dssp SHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHHHHHTTCEEE-------------EECBCTTSS-----BC-
T ss_pred CcHHHHHHHHHHhc--------CCCCEEEECCCCcHhHHHHHHHcCCEEE-------------EeeCCCCCC-----CC-
Confidence 99999999999763 2347899999999998765544322111 111110000 00
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-cccc
Q 013204 183 EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDK 261 (447)
Q Consensus 183 ~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~ 261 (447)
++++++.+. +++++|+++..++.+|.+ .+.+++++|.++|++||+++|+||+|+++.+.|... ....
T Consensus 148 -------~~~l~~~l~----~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 215 (376)
T 2dou_A 148 -------LKAVPEGVW----REAKVLLLNYPNNPTGAV-ADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLAL 215 (376)
T ss_dssp -------GGGSCHHHH----HHEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGS
T ss_pred -------HHHHHHhhc----cCceEEEECCCCCCcCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhc
Confidence 255666554 245666666556666654 578899999999999999999999999886655321 1222
Q ss_pred CC---CCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHH
Q 013204 262 YS---IKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQ 336 (447)
Q Consensus 262 ~~---~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~ 336 (447)
.+ ....+.++||.++.+++|+|++++++++++.+... ....+++.++++++++.++|+..+ -++..++
T Consensus 216 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 288 (376)
T 2dou_A 216 PGAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLERV-------KGVIDFNQYAGVLRMGVEALKTPKEVVRGYARV 288 (376)
T ss_dssp TTGGGTEEEEEEHHHHHTCGGGCCEEEEECHHHHHHHHHH-------HHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCcEEEEecchhhcCChhheeEEEecCHHHHHHHHHH-------HHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 22 22334478999974338999999999998887632 222355678888888888886421 1233455
Q ss_pred HHHHHHHHHHhHhhccCCCceeeEee-eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------CCE
Q 013204 337 VNKIAPKFQDGVKAFSDSPIIGEIRG-TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------GDN 408 (447)
Q Consensus 337 ~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------g~~ 408 (447)
++++.+++.+.|+++ +....+ .|.++.+.+.... ....+.+.|+++||++.++ .+.
T Consensus 289 ~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~v~~g~~f~~~~~~~ 352 (376)
T 2dou_A 289 YRERALGMAEALKGV-----LSLLPPRATMYLWGRLPEGV-----------DDLEFGLRLVERGVALAPGRGFGPGGKGF 352 (376)
T ss_dssp HHHHHHHHHHHHTTT-----SEECCCCBSSEEEEECCTTC-----------CHHHHHHHHHHTTEECEEGGGGCGGGTTE
T ss_pred HHHHHHHHHHHHHHh-----cCccCCCeeEEEEEECCCCC-----------CHHHHHHHHHHCCEEEcCchhhCCCCCCe
Confidence 556666666666553 222223 3456667765321 1346888999999999875 367
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
+|++++ .++++|++++++|++++
T Consensus 353 ~Ris~~--~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 353 VRIALV--RPLEELLEAAKRIREAL 375 (376)
T ss_dssp EEEECC--SCHHHHHHHHHHHHHTC
T ss_pred EEEEec--CCHHHHHHHHHHHHHHh
Confidence 999965 48999999999998764
No 65
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.96 E-value=4.6e-27 Score=229.48 Aligned_cols=341 Identities=11% Similarity=0.073 Sum_probs=223.4
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc-CCCCe-EEEeCChhhHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-SKMAK-VFFTNSGSEANDT 110 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~-v~~~~sGseA~~~ 110 (447)
..++||.++. ..++ .+|++.+++.+++++....+....+..+....+++.+.+.+.. .+.++ +++++||++|++.
T Consensus 26 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~ 102 (389)
T 1gd9_A 26 KDVISLGIGE--PDFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 102 (389)
T ss_dssp SSCEECCCCS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred cCeEecCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHH
Confidence 4689998775 3566 6899999999998763222221112333444455555444331 35678 9999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
+++.+. .++++|++.+++||+........ |... ..++......+. .++
T Consensus 103 ~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~-g~~~------------~~v~~~~~~~~~-----------~d~ 150 (389)
T 1gd9_A 103 GLSAFL--------KDGEEVLIPTPAFVSYAPAVILA-GGKP------------VEVPTYEEDEFR-----------LNV 150 (389)
T ss_dssp HHTTTC--------CTTCEEEEEESCCTTHHHHHHHH-TCEE------------EEEECCGGGTTC-----------CCH
T ss_pred HHHHhC--------CCCCEEEEcCCCchhHHHHHHHC-CCEE------------EEeccCCccCCC-----------CCH
Confidence 998763 23478999999999986544332 2211 111111000000 013
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc-ccccccC-CC-CCC
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT-MFGCDKY-SI-KPD 267 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~-~~~~~~~-~~-~~d 267 (447)
++|++.+. + ++++|++++.++.+|.+ .+.+.+++|.++|++||+++|+||+|+++.+.|. ......+ +. ..|
T Consensus 151 ~~l~~~l~---~-~~~~v~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (389)
T 1gd9_A 151 DELKKYVT---D-KTRALIINSPCNPTGAV-LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERT 225 (389)
T ss_dssp HHHHHHCC---T-TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGE
T ss_pred HHHHHhcC---c-CceEEEEECCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCE
Confidence 67777664 2 45666666666666654 5788999999999999999999999998866654 2222222 21 234
Q ss_pred ee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh----hcHHHHHHHHH
Q 013204 268 LV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE----RNIVEQVNKIA 341 (447)
Q Consensus 268 ~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~----~~~~~~~~~~~ 341 (447)
++ ++||.++.+++|+|++++++++++.+... ....+++.+++++.++.++|+.... ++..++++++.
T Consensus 226 i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 298 (389)
T 1gd9_A 226 ITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKF-------QMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRR 298 (389)
T ss_dssp EEEEESTTTTTCGGGCCEEEECCHHHHHHHHHH-------HTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhcCCcccceEEEEECHHHHHHHHHH-------HhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Confidence 43 68999974448999999999998888632 2334677788888888888874332 34456677777
Q ss_pred HHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee-------CCEEEEec
Q 013204 342 PKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS-------GDNIMMSP 413 (447)
Q Consensus 342 ~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------g~~iR~~~ 413 (447)
+++.+.|+++ +..+.. ...|.++.+.+..... ....+.+.|+ ++||++.++ .+.+|+++
T Consensus 299 ~~l~~~L~~~-g~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~ 365 (389)
T 1gd9_A 299 KLVWKRLNEM-GLPTVK--PKGAFYIFPRIRDTGL----------TSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISY 365 (389)
T ss_dssp HHHHHHHHHT-TCCCCC--CCBTTEECCBCGGGTC----------CHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEEC
T ss_pred HHHHHHHHHc-CCeecC--CCeeeEEEEeccCCCC----------CHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe
Confidence 8888888775 333221 1224445555542110 1456788887 899999875 35799996
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 013204 414 PFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 414 ~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+ .++++|++++++|++++++
T Consensus 366 ~--~~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 366 A--TAYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp C--SCHHHHHHHHHHHHHHHHH
T ss_pred c--CCHHHHHHHHHHHHHHHHh
Confidence 6 4999999999999998865
No 66
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.96 E-value=1.7e-26 Score=226.43 Aligned_cols=336 Identities=17% Similarity=0.170 Sum_probs=224.4
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc---cccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY---HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEA 107 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA 107 (447)
||++|+||+++. ..++| .+|++.+++.+++.+.... +.......+...++++++++++. .. +.++.++|+++
T Consensus 44 ~g~~~i~~~~~~-~~~~~-~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--~~-~~i~~~sG~~a 118 (401)
T 2bwn_A 44 GKQDITVWCGND-YLGMG-QHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ--KE-AALVFSSAYNA 118 (401)
T ss_dssp CEEEEEECSCSC-TTSGG-GCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTT--CS-EEEEESCHHHH
T ss_pred CCCcEEEeeCCC-cccCC-CCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhC--CC-cEEEECCcHHH
Confidence 789999998762 12344 3789999999998763221 11222355678899999999973 23 44455778889
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
+..+++++... .+++.|++..+.|++.... ....|.. +..++..
T Consensus 119 ~~~~~~~l~~~------~~gd~Vl~~~~~~~~~~~~-~~~~g~~------------~~~v~~~----------------- 162 (401)
T 2bwn_A 119 NDATLSTLRVL------FPGLIIYSDSLNHASMIEG-IKRNAGP------------KRIFRHN----------------- 162 (401)
T ss_dssp HHHHHHHHHHH------STTCEEEEETTCCHHHHHH-HHHSCCC------------EEEECTT-----------------
T ss_pred HHHHHHHHhcC------CCCCEEEECchhhHHHHHH-HHHcCCe------------EEEEcCC-----------------
Confidence 99998865321 1235777777666554433 2222221 1112211
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc--CCCccccccccccCCC-
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC--AFGRLGTMFGCDKYSI- 264 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~--g~g~~g~~~~~~~~~~- 264 (447)
+.+++++++....++++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ .+|..|..+. ...++
T Consensus 163 -d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~ 236 (401)
T 2bwn_A 163 -DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLM 236 (401)
T ss_dssp -CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCG
T ss_pred -CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCcc
Confidence 1377888887644346778999999998898876 9999999999999999999998 3454554333 33343
Q ss_pred -CCCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHH
Q 013204 265 -KPDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVN 338 (447)
Q Consensus 265 -~~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~ 338 (447)
.+|++ ++||+++.. .|++++++++++.+..... .+ . .+.+.++++++++.++++.++. ++..++++
T Consensus 237 ~~~~i~~~s~sK~~~~~---GG~~~~~~~~~~~l~~~~~---~~-~-~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 308 (401)
T 2bwn_A 237 HRIDIFNGTLAKAYGVF---GGYIAASARMVDAVRSYAP---GF-I-FSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQ 308 (401)
T ss_dssp GGCSEEEEESSSTTCSC---CEEEEECHHHHHHHHHHCH---HH-H-TSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred ccCcEEEeechhhccCC---CCEEecCHHHHHHHHHhCc---Cc-e-ecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 24554 789999852 2788899988887653110 11 1 1223356888888889988765 35778888
Q ss_pred HHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC--------CEE
Q 013204 339 KIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG--------DNI 409 (447)
Q Consensus 339 ~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g--------~~i 409 (447)
++.+++++.|+++ +..+.. ..+.++.+.+.... ....+.+.|+ ++||.+.++. +.+
T Consensus 309 ~~~~~l~~~L~~~-g~~~~~---~~~~~~~~~~~~~~-----------~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~i 373 (401)
T 2bwn_A 309 MHAKVLKMRLKAL-GMPIID---HGSHIVPVVIGDPV-----------HTKAVSDMLLSDYGVYVQPINFPTVPRGTERL 373 (401)
T ss_dssp HHHHHHHHHHHHH-TCCBCC---CSSSCEEEECCCHH-----------HHHHHHHHHHHHHCEECCEECTTTSCTTCCEE
T ss_pred HHHHHHHHHHHHC-CCcccC---CCCCeEEEEeCChH-----------HHHHHHHHHHhcCCEEEeecCCCCCCCCCceE
Confidence 8999999999876 433321 23446666654211 2445788886 7899987642 479
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
|++++..++++++++++++|+++++++
T Consensus 374 Ris~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 374 RFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred EEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999899999999999999887653
No 67
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.96 E-value=3.7e-27 Score=232.94 Aligned_cols=351 Identities=15% Similarity=0.108 Sum_probs=229.9
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC---cccccCcCCChHHHHHHHHHHHhcCc--CCCCeEEEeCChhh
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP---FYHSFWNRTTKPSLDLAKELLEMFTA--SKMAKVFFTNSGSE 106 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~v~~~~sGse 106 (447)
++.++||.++... ..|+.+|++.+++.+++++.. ..+....+..+....+++.+.+.+.. .+.+++++++||++
T Consensus 42 ~~~~idl~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~ 120 (425)
T 1vp4_A 42 DKDAISFGGGVPD-PETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ 120 (425)
T ss_dssp STTCEECCCCSCC-GGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred CCCceeCCCCCCC-cccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHH
Confidence 5679999888643 457889999999999887531 11111112233344444444433231 35679999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHH
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYS 186 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (447)
|++.+++.+. .++++|++.+++||++....... |... ..++.... +
T Consensus 121 al~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~-g~~~------------~~v~~~~~------~------- 166 (425)
T 1vp4_A 121 ALDLIGKLFL--------DDESYCVLDDPAYLGAINAFRQY-LANF------------VVVPLEDD------G------- 166 (425)
T ss_dssp HHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHTT-TCEE------------EEEEEETT------E-------
T ss_pred HHHHHHHHhC--------CCCCEEEEeCCCcHHHHHHHHHc-CCEE------------EEeccCCC------C-------
Confidence 9999999763 23478999999999986555432 2211 11111000 0
Q ss_pred HHHHHHHHHHHHhhC----CCcEEEE-EEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc-cccc
Q 013204 187 TRLANNLEDLILKEG----PETIAAF-IAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM-FGCD 260 (447)
Q Consensus 187 ~~~~~~le~~l~~~~----~~~~a~v-i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~-~~~~ 260 (447)
.++++|++.+.... ..++++| ++...++.+|.+ .+.+++++|.++|++||+++|+||+|+++.+.|.. ....
T Consensus 167 -~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~ 244 (425)
T 1vp4_A 167 -MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVT-TSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIF 244 (425)
T ss_dssp -ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHH
T ss_pred -CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHH
Confidence 11477777775410 1256676 455556666644 57889999999999999999999999988665543 2222
Q ss_pred cCCCCCC---eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH--h--hhcH
Q 013204 261 KYSIKPD---LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY--K--ERNI 333 (447)
Q Consensus 261 ~~~~~~d---~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~--~--~~~~ 333 (447)
.++..++ +.++||.++.| +|+|++++++++++.+... ....+++.++++++++.++|+.. . -++.
T Consensus 245 ~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 316 (425)
T 1vp4_A 245 KIGGPERVVLLNTFSKVLAPG-LRIGMVAGSKEFIRKIVQA-------KQSADLCSPAITHRLAARYLERYDLLEQLKPT 316 (425)
T ss_dssp HHHCTTTEEEEEESTTTTCGG-GCEEEEECCHHHHHHHHHH-------HHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHH
T ss_pred HhCCCCCEEEEeccccccccc-cceEEEeeCHHHHHHHHHH-------hhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHH
Confidence 2221222 34789999954 8999999999998887632 22234566889999888888753 1 1344
Q ss_pred HHHHHHHHHHHHHhHhhc-cCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee------
Q 013204 334 VEQVNKIAPKFQDGVKAF-SDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------ 405 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l-~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------ 405 (447)
.++++++.+++.+.|+++ +..+.+..+ +..|.++.+.+..... ...+.+.|+++||++.++
T Consensus 317 ~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~-----------~~~l~~~l~~~gi~v~~g~~f~~~ 385 (425)
T 1vp4_A 317 IELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFD-----------TWEMFEYAKRKKVFYVPGRVFKVY 385 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCC-----------TTTTHHHHHHHTEECEEGGGGCTT
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCCCCC-----------HHHHHHHHHHCCCEEECchhhcCC
Confidence 566677778888888764 321122222 3446677777753211 123677888889999874
Q ss_pred ---CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 406 ---GDNIMMSPPFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 406 ---g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
.+.+|++++. .++++|++++++|+++++++.++
T Consensus 386 ~~~~~~iRis~~~-~~~e~i~~~l~~l~~~l~~~~~~ 421 (425)
T 1vp4_A 386 DEPSPSMRLSFCL-PPDEKIVEGIKRLREVVLEYGKE 421 (425)
T ss_dssp CCCCSEEEEECSS-SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCC-CCHHHHHHHHHHHHHHHHHHHhh
Confidence 2569999876 38999999999999999887654
No 68
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.96 E-value=4.8e-27 Score=231.15 Aligned_cols=343 Identities=13% Similarity=0.095 Sum_probs=220.1
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhc----Cc-CCC-CeEEEeC
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMF----TA-SKM-AKVFFTN 102 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~----~~-~~~-~~v~~~~ 102 (447)
.+|++++||.++. ..+| .+|.+.+++.+++.+.. ..+. +.....++.+.+++++ .. .++ +++++++
T Consensus 34 ~~g~~~idl~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~y~----~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~ 106 (412)
T 2x5d_A 34 RRGEDIIDLSMGN--PDGP-TPPHIVEKLCTVAQREDTHGYS----TSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTI 106 (412)
T ss_dssp HTTCCCEECSSCC--CCSC-CCHHHHHHHHHTC-------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEES
T ss_pred hcCCCEEecCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCC----CCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcC
Confidence 4789999998876 4567 78999999998876531 1111 1222344555555544 31 245 6899999
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCCh
Q 013204 103 SGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETE 182 (447)
Q Consensus 103 sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (447)
||++|++.+++.+. .++++|++.+++||+........+. .. ..++... +
T Consensus 107 g~~~a~~~~~~~~~--------~~gd~Vl~~~p~~~~~~~~~~~~g~-~~------------~~~~~~~--------~-- 155 (412)
T 2x5d_A 107 GSKEGLAHLMLATL--------DHGDTILVPNPSYPIHIYGAVIAGA-QV------------RSVPLVP--------G-- 155 (412)
T ss_dssp CHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHHTC-EE------------EEEECST--------T--
T ss_pred ChHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCC-EE------------EEeecCC--------c--
Confidence 99999999999763 2347899999999998655543221 11 1111110 0
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc-ccccc
Q 013204 183 EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM-FGCDK 261 (447)
Q Consensus 183 ~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~-~~~~~ 261 (447)
..+. .+++++++.+. + ++++|+++..++.+|. .++.+++++|.++|++||+++|+||+|+++.+.|.. .....
T Consensus 156 ~~~~-~d~~~l~~~i~---~-~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~ 229 (412)
T 2x5d_A 156 IDFF-NELERAIRESI---P-KPRMMILGFPSNPTAQ-CVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQ 229 (412)
T ss_dssp SCHH-HHHHHHHHTEE---S-CCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGG
T ss_pred cCCC-CCHHHHHHhcc---c-CceEEEECCCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhh
Confidence 0111 22466665553 2 3344444333454554 457799999999999999999999999988665532 12211
Q ss_pred C----CCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHH
Q 013204 262 Y----SIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVE 335 (447)
Q Consensus 262 ~----~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~ 335 (447)
+ +....+.++||.++.+++|+|++++++++++.+... ....+++.+++++.++.++|+... -++..+
T Consensus 230 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 302 (412)
T 2x5d_A 230 VPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARI-------KSYHDYGTFTPLQVAAIAALEGDQQCVRDIAR 302 (412)
T ss_dssp STTGGGTEEEEEECC-CCSCTTSCCEEEEECHHHHHHHHHH-------HHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHH
T ss_pred ccCccCcEEEEecCccccCCcccceEEEEcCHHHHHHHHHH-------HhhhccCCCHHHHHHHHHHHhCCHHHHHHHHH
Confidence 1 222234478999983338999999999998887632 223367788999998888887422 134566
Q ss_pred HHHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEee-------C
Q 013204 336 QVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVS-------G 406 (447)
Q Consensus 336 ~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-------g 406 (447)
+++++.+++.+.|+++ +..+ ..+. |.++.+.+...... .....+.+.|++ +||++.++ .
T Consensus 303 ~~~~~~~~l~~~L~~~-g~~~---~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~ 370 (412)
T 2x5d_A 303 QYQQRRDVLVKGLREA-GWMV---ENPKASMYVWAKIPEPYAH--------LGSLEFAKKLLQDAKVSVSPGIGFGDYGD 370 (412)
T ss_dssp HHHHHHHHHHHHHHHH-TCCC---CCCSBSSEEEEECCTTTGG--------GCHHHHHHHHHHHHCEECEEGGGGCGGGT
T ss_pred HHHHHHHHHHHHHHHC-CCEe---cCCCeeeEEEEEcCCccCC--------CCHHHHHHHHHHHCCEEEeCchhhCCCCC
Confidence 7777888888888776 3222 2233 44666766421100 013457788865 69999875 3
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+.+|++++. ++++|++++++|+++++++.
T Consensus 371 ~~iRis~~~--~~~~l~~~l~~l~~~l~~~~ 399 (412)
T 2x5d_A 371 DHVRFALIE--NRDRLRQAVRGIKAMFRADG 399 (412)
T ss_dssp TEEEEECCS--CHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEecC--CHHHHHHHHHHHHHHHHhcC
Confidence 579999764 89999999999999997643
No 69
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.96 E-value=1.2e-26 Score=229.42 Aligned_cols=349 Identities=13% Similarity=0.067 Sum_probs=229.9
Q ss_pred CCCCEEEecCCccccc-cCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc----CCCCeEEEeCCh
Q 013204 30 VNGKKYLDSLAGLWCT-ALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA----SKMAKVFFTNSG 104 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~v~~~~sG 104 (447)
.+|+.++||..+.... +-.+.+|.+.+++.+.+.+.... . ..+.....++.+.+++++.. ...+++++++||
T Consensus 51 ~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~-~--y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~ 127 (427)
T 3dyd_A 51 NPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYN-G--YAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGC 127 (427)
T ss_dssp CTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSS-S--CCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSH
T ss_pred cCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCC-C--CCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCc
Confidence 4678999998885321 11247899999999998763211 0 11333456777777777631 356799999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhH
Q 013204 105 SEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184 (447)
Q Consensus 105 seA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (447)
++|++.+++.+. .++++|++.+++|+++.......+.... .+++.....+
T Consensus 128 t~al~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~-------------~~~~~~~~~~--------- 177 (427)
T 3dyd_A 128 SQAIDLCLAVLA--------NPGQNILVPRPGFSLYKTLAESMGIEVK-------------LYNLLPEKSW--------- 177 (427)
T ss_dssp HHHHHHHHHHHC--------CTTCEEEEEESCCTHHHHHHHHTTCEEE-------------EEEEEGGGTT---------
T ss_pred HHHHHHHHHHhc--------CCCCEEEEcCCCchhHHHHHHHcCCEEE-------------EEecccccCC---------
Confidence 999999999874 3357899999999998655544332111 1111000000
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-ccccCC
Q 013204 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDKYS 263 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~~~ 263 (447)
..+++++++.+. + .+++|+++..++.+|. .++.+.+++|+++|++||+++|+||+|++|++.|..+ ....++
T Consensus 178 --~~d~~~l~~~l~---~-~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~ 250 (427)
T 3dyd_A 178 --EIDLKQLEYLID---E-KTACLIVNNPSNPCGS-VFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLS 250 (427)
T ss_dssp --EECHHHHHSSCC---T-TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGC
T ss_pred --CCCHHHHHHHhc---c-CCCEEEEECCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhC
Confidence 001356665553 2 3444454444666664 5678899999999999999999999999998777543 344445
Q ss_pred CCCCee---eecccCCCcccceeEEEeC-------hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh---
Q 013204 264 IKPDLV---SFAKALSSAYMPIGAILVS-------PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--- 330 (447)
Q Consensus 264 ~~~d~v---~~sK~l~gg~~~~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--- 330 (447)
..++++ ++||.++.+++|+|+++++ +++++.+... ...++++++++++++.++|+....
T Consensus 251 ~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~--------~~~~~~~~~~~~~a~~~~L~~~~~~~~ 322 (427)
T 3dyd_A 251 TDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKL--------SQRILGPCTIVQGALKSILCRTPGEFY 322 (427)
T ss_dssp SSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHH--------HHHHCCSCHHHHHHHHHHHHHSCHHHH
T ss_pred CCCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHHH--------HhccCCCCHHHHHHHHHHHHhcCHHHH
Confidence 555566 7899977655999999987 4676666421 112567788999988888874221
Q ss_pred hcHHHHHHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC--
Q 013204 331 RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG-- 406 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g-- 406 (447)
++..++++++.+++.+.|+++ +.+..+.+. |.++.+.+.....+. . .....+.++|+ ++||++.++.
T Consensus 323 ~~~~~~~~~~~~~l~~~L~~~---~g~~~~~p~~g~~~~~~l~~~~~~~-----~-~~~~~~~~~l~~~~gV~v~~g~~~ 393 (427)
T 3dyd_A 323 HNTLSFLKSNADLCYGALAAI---PGLRPVRPSGAMYLMVGIEMEHFPE-----F-ENDVEFTERLVAEQSVHCLPATCF 393 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS---TTEEEECCSBTTEEEEEECGGGCTT-----C-SSHHHHHHHHHHHHCEECEEGGGG
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CCceecCCCeeEEEEEecCHhhcCC-----C-CCHHHHHHHHHHHCCEEEECCccc
Confidence 334566667777777777765 333334333 456666665321100 0 01345777775 8899998763
Q ss_pred ---CEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 407 ---DNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 407 ---~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+.+|++ +.+++++|++++++|++++++++
T Consensus 394 ~~~~~iRis--~~~~~e~i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 394 EYPNFIRVV--ITVPEVMMLEACSRIQEFCEQHY 425 (427)
T ss_dssp TCTTEEEEE--SCSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEE--ECCCHHHHHHHHHHHHHHHHHhh
Confidence 679999 56899999999999999987653
No 70
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.96 E-value=1.2e-26 Score=224.24 Aligned_cols=323 Identities=13% Similarity=0.081 Sum_probs=219.0
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~ 110 (447)
++++++||+++. ++++ .+|++.+++.++++....+ +.....++.+++++++. .+.+++++++||++|++.
T Consensus 30 ~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y------~~~~~~~lr~~la~~~~-~~~~~v~~~~g~t~a~~~ 99 (363)
T 3ffh_A 30 GLTKITKLSSNE--NPLG-TSKKVAAIQANSSVETEIY------PDGWASSLRKEVADFYQ-LEEEELIFTAGVDELIEL 99 (363)
T ss_dssp TCSCCEECSSCS--CTTC-CCHHHHHHHHTCBSCCCBC----------CHHHHHHHHHHHT-CCGGGEEEESSHHHHHHH
T ss_pred CCCceEEccCCC--CCCC-CCHHHHHHHHHHHHHhhcC------CCcchHHHHHHHHHHhC-CChhhEEEeCCHHHHHHH
Confidence 346899998874 4666 6899999998876543222 33445788888888873 466799999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
+++.+. .++++|++.+++|++........+... ..++....+. . ++
T Consensus 100 ~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~-------------~~v~~~~~~~-----~--------d~ 145 (363)
T 3ffh_A 100 LTRVLL--------DTTTNTVMATPTFVQYRQNALIEGAEV-------------REIPLLQDGE-----H--------DL 145 (363)
T ss_dssp HHHHHC--------STTCEEEEEESSCHHHHHHHHHHTCEE-------------EEEECCTTSC-----C--------CH
T ss_pred HHHHHc--------cCCCEEEEcCCChHHHHHHHHHcCCEE-------------EEecCCCCCC-----c--------CH
Confidence 999763 335789999999998765544332211 1112111000 0 13
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCC---
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPD--- 267 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d--- 267 (447)
+++++.+. +++++|+++.+++.+|.+. +.+.+.+|++.|++ |+++|+||+|+++++ |...........+|
T Consensus 146 ~~l~~~i~----~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i 218 (363)
T 3ffh_A 146 EGMLNAID----EKTTIVWICNPNNPTGNYI-ELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLI 218 (363)
T ss_dssp HHHHHHCC----TTEEEEEEESSCTTTCCCC-CHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEE
T ss_pred HHHHHhcc----cCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEE
Confidence 66776664 3566777777777777655 55556666666655 999999999998876 54332222212233
Q ss_pred -eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHH
Q 013204 268 -LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-RNIVEQVNKIAPKFQ 345 (447)
Q Consensus 268 -~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~l~ 345 (447)
+.++||.++.+++|+|++++++++++.+... . .+++.++++++++.++|+..+. ++..++++++.+++.
T Consensus 219 ~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~-------~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 289 (363)
T 3ffh_A 219 ITRTFSKIYGLASARVGYGIADKEIIRQLNIV-------R--PPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYE 289 (363)
T ss_dssp EEEESSSTTCCSSCCCEEEEECHHHHHHHHHT-------C--CSCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeechhhhcCchhceeeeecCHHHHHHHHHh-------C--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 4468999984348999999999999988742 1 3677899999999888863221 334566666777777
Q ss_pred HhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----CEEEEecCCCCCHH
Q 013204 346 DGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----DNIMMSPPFIMSPE 420 (447)
Q Consensus 346 ~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----~~iR~~~~~~~t~e 420 (447)
+.|+++.. +...++.|.++.+.+.. . ...+.+.|.++||++.++. +.+|++++ +++
T Consensus 290 ~~l~~~~g---~~~~~~~~~~~~~~~~~-~------------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~ 350 (363)
T 3ffh_A 290 AFAKRFEK---VKLYPANGNFVLIDLGI-E------------AGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEE 350 (363)
T ss_dssp HHHHHCTT---CEECCCCSSEEEEECSS-C------------HHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHH
T ss_pred HHHhhCCC---ceECCCCCeEEEEECCC-C------------HHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHH
Confidence 77766312 22345567777776653 1 4568889999999998753 67999954 999
Q ss_pred HHHHHHHHHHHH
Q 013204 421 EVDELISKYGKA 432 (447)
Q Consensus 421 ~i~~~~~~l~~~ 432 (447)
++++++++|+++
T Consensus 351 ~i~~~~~~l~~~ 362 (363)
T 3ffh_A 351 DNSAVIALLEKL 362 (363)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 71
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.96 E-value=3.2e-27 Score=229.48 Aligned_cols=333 Identities=11% Similarity=0.000 Sum_probs=217.6
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc-CCCCeEEEeCChhhHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-SKMAKVFFTNSGSEAN 108 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~v~~~~sGseA~ 108 (447)
.+| +++||+++. ++++ .+|.+.+++.+++.....+ +...+..+...++++.+.+.+.. .+.+++++++||++|+
T Consensus 21 ~~g-~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y-~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al 95 (376)
T 3ezs_A 21 PKK-RGLDLGIGE--PQFE-TPKFIQDALKNHTHSLNIY-PKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVL 95 (376)
T ss_dssp CSS-CCCBCSSCC--CCSC-CCHHHHHHHHTTGGGGGSC-CCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHH
T ss_pred ccC-CEEEeCCCC--CCCC-CCHHHHHHHHHhhhhcCCC-CCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHH
Confidence 467 899998886 5566 6899999999887432222 11122345555666666555431 2678999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
+.+++.+. ...++++|++.+++||++.......+.... .++......+..
T Consensus 96 ~~~~~~~~------~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~-------------~~~~~~~~~~~~----------- 145 (376)
T 3ezs_A 96 FNFPSFVL------FDYQNPTIAYPNPFYQIYEGAAKFIKAKSL-------------LMPLTKENDFTP----------- 145 (376)
T ss_dssp HHHHHHHT------TTCSSCEEEEEESCCTHHHHHHHHTTCEEE-------------EEECCGGGTSCC-----------
T ss_pred HHHHHHHc------CCCCCCEEEEecCCcHhHHHHHHHcCCEEE-------------EcccCCCCCcch-----------
Confidence 99999874 111157899999999998665544332211 111111000000
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccc-c-------
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGC-D------- 260 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~-~------- 260 (447)
++++.+.. ++++|+++..++.+|. .++.+.+++|+++|++||+++|+||+|+++.+.+..... .
T Consensus 146 ---~l~~~~~~----~~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 217 (376)
T 3ezs_A 146 ---SLNEKELQ----EVDLVILNSPNNPTGR-TLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGN 217 (376)
T ss_dssp ---CCCHHHHH----HCSEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTC
T ss_pred ---hHHhhhcc----CCCEEEEcCCCCCcCC-CCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccc
Confidence 23333332 2334555444555664 457788999999999999999999999988776643322 1
Q ss_pred -cCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-hcHHHHHH
Q 013204 261 -KYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-RNIVEQVN 338 (447)
Q Consensus 261 -~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~ 338 (447)
..+....+.++||.++.+++|+|++++++++++.+... .+..+++.++++++++.++++..+. ++..++++
T Consensus 218 ~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 290 (376)
T 3ezs_A 218 EAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAF-------RAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYA 290 (376)
T ss_dssp TTCTTEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHH-------HTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred cccCcEEEEecchhccCCccceeEEEeeCHHHHHHHHHH-------HhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 23333445578999974448999999999999888632 3345677899999988888873111 22334444
Q ss_pred HHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEee---------CCE
Q 013204 339 KIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVS---------GDN 408 (447)
Q Consensus 339 ~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~---------g~~ 408 (447)
++.+++.+.|+ ++. .+..|.++.+.+.+ ...+.+.|++ +||++.++ .+.
T Consensus 291 ~~~~~l~~~l~-----~~~--~~~~~~~~~~~~~~--------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~ 349 (376)
T 3ezs_A 291 NNLKLARKIFK-----NTL--IYPYSFYVYLPVQN--------------GENFAKTLYQNEGIITLPALYLGRNRIGADY 349 (376)
T ss_dssp HHHHHHHHHST-----TCC--CCSBSSEEEEECSC--------------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTE
T ss_pred HHHHHHHHHhc-----CCC--CCCcceEEEEECCC--------------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCe
Confidence 44455554444 211 34456677776651 3457888887 89999864 267
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 409 IMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 409 iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+|++++ .++++|++++++|++++++
T Consensus 350 iRis~~--~~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 350 VRLALV--YDTPLLEKPLEIIETYREN 374 (376)
T ss_dssp EEEECC--SCHHHHHHHHHHHHHHHCC
T ss_pred EEEEEc--CCHHHHHHHHHHHHHHHHh
Confidence 999965 5999999999999998764
No 72
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.96 E-value=1.1e-26 Score=228.46 Aligned_cols=342 Identities=13% Similarity=0.072 Sum_probs=223.2
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~ 108 (447)
.+|++++||.++.. .++ .+|++.+++ +++++....+....+..+....+++.+...+. ..+.+++++++||++|+
T Consensus 40 ~~g~~~i~l~~~~~--~~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~ 115 (409)
T 2gb3_A 40 KRGVRIHHLNIGQP--DLK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI 115 (409)
T ss_dssp HTTCEEEECSSCCC--CSC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEeccCCCC--CCC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHH
Confidence 36889999987753 456 578999999 88865322222111223333444444443321 13557899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
+.+++.+. .++++|++.+++||+........ |... ..++......+..
T Consensus 116 ~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~-g~~~------------~~v~~~~~~~~~~----------- 163 (409)
T 2gb3_A 116 LFSFAVIA--------NPGDEILVLEPFYANYNAFAKIA-GVKL------------IPVTRRMEEGFAI----------- 163 (409)
T ss_dssp HHHHHHHC--------CTTCEEEEEESCCTHHHHHHHHH-TCEE------------EEEECCGGGTSCC-----------
T ss_pred HHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHc-CCEE------------EEeccCCCCCCcc-----------
Confidence 99999763 33478999999999886544332 2211 1111110000000
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCC-CCC
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI-KPD 267 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~-~~d 267 (447)
+++|++.+. +++++|+++++++.+|.+ ++.+.+++|.++|++||+++|+||+|+++.+.|..... ..++ ..|
T Consensus 164 -~~~l~~~l~----~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~ 236 (409)
T 2gb3_A 164 -PQNLESFIN----ERTKGIVLSNPCNPTGVV-YGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKV 236 (409)
T ss_dssp -CTTGGGGCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTE
T ss_pred -HHHHHHhhC----cCCeEEEECCCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCE
Confidence 144555443 256677777777777754 56789999999999999999999999988665533222 1223 346
Q ss_pred ee--eecccCCCcccceeEEEeCh-hHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHHHH
Q 013204 268 LV--SFAKALSSAYMPIGAILVSP-EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKIAP 342 (447)
Q Consensus 268 ~v--~~sK~l~gg~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~~~ 342 (447)
++ ++||.++.+++++|++++++ ++++.+... ....+ +.++++++++.++|+... -+++.++++++.+
T Consensus 237 i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~-------~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 308 (409)
T 2gb3_A 237 VVIDSVSKKFSACGARVGCLITRNEELISHAMKL-------AQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVE 308 (409)
T ss_dssp EEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHH-------HHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred EEEecchhccCCccceEEEEEECcHHHHHHHHHH-------HhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 55 67999974448999999998 888877532 12233 678888888888885311 2345567777788
Q ss_pred HHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc------CceEEee----------C
Q 013204 343 KFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH------GMLVRVS----------G 406 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------Gi~~~~~----------g 406 (447)
++.+.|+++ +..++ .....|.++.+.+.. . ....+.+.|+++ ||++.++ .
T Consensus 309 ~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~-~-----------~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~ 374 (409)
T 2gb3_A 309 TVLKKLEEH-GLKRF-TKPSGAFYITAELPV-E-----------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGK 374 (409)
T ss_dssp HHHHHHHHT-TCCCB-CCCSBSSEEEEECSS-S-----------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTS
T ss_pred HHHHHHHHc-Cceee-eCCCeeEEEEEEeCC-C-----------CHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCC
Confidence 888888776 33321 112234555556541 1 145688888887 9999874 3
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
+.+|++++ +++++|++++++|+++++++++
T Consensus 375 ~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~ 404 (409)
T 2gb3_A 375 KEIRIACV--LEKDLLSRAIDVLMEGLKMFCS 404 (409)
T ss_dssp SEEEEECC--SCHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEeC--CCHHHHHHHHHHHHHHHHHhhh
Confidence 57999976 8999999999999999987653
No 73
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.95 E-value=5.4e-27 Score=229.03 Aligned_cols=338 Identities=14% Similarity=0.083 Sum_probs=222.2
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~ 109 (447)
.|++++||.++.. .+++ +|.+.+++.+++++....+....+..+....+++.+.+.+. +.+.+++++++||++|++
T Consensus 39 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~ 115 (389)
T 1o4s_A 39 KGEDVINLTAGEP--DFPT-PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 115 (389)
T ss_dssp TTCCCEECCCSSC--SSCC-CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHH
Confidence 5788999987753 5674 89999999999876322222111223333344444433322 125679999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.+++.+. .++++|++.+++|++........ |... ..++......+. .+
T Consensus 116 ~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~-g~~~------------~~v~~~~~~~~~-----------~d 163 (389)
T 1o4s_A 116 NAFMALL--------DPGDEVIVFSPVWVSYIPQIILA-GGTV------------NVVETFMSKNFQ-----------PS 163 (389)
T ss_dssp HHHHHHC--------CTTCEEEEEESCCTTHHHHHHHT-TCEE------------EEEECCGGGTTC-----------CC
T ss_pred HHHHHhC--------CCCCEEEEcCCCchhHHHHHHHc-CCEE------------EEEecCCccCCC-----------CC
Confidence 9999763 23478999999999986554332 2111 111111000000 01
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccC-C-CCCC
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKY-S-IKPD 267 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~-~-~~~d 267 (447)
+++|++.+. +++++|+++..++.+|. .++.+.+++|.++|++||+++|+||+|+++...|.......+ + ...|
T Consensus 164 ~~~l~~~l~----~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~ 238 (389)
T 1o4s_A 164 LEEVEGLLV----GKTKAVLINSPNNPTGV-VYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRI 238 (389)
T ss_dssp HHHHHHTCC----TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTE
T ss_pred HHHHHHhcc----cCceEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcE
Confidence 366776654 24666777666666675 457789999999999999999999999987665532222111 1 1234
Q ss_pred e--eeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 013204 268 L--VSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQ 345 (447)
Q Consensus 268 ~--v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~ 345 (447)
+ .++||.++.+++++|++++++++++.+... ....+++.+++++.++.++|+.. .+++.++++++.+++.
T Consensus 239 i~~~s~sK~~~~~G~r~G~l~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~ 310 (389)
T 1o4s_A 239 VYINGFSKSHSMTGWRVGYLISSEKVATAVSKI-------QSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVV 310 (389)
T ss_dssp EEEEESTTTTTCGGGCCEEEECCHHHHHHHHHH-------HHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHH
T ss_pred EEEeechhhcCCcccceEEEEeCHHHHHHHHHH-------hhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHH
Confidence 4 468999974348999999999988877631 22235677888888887777532 3456778888888888
Q ss_pred HhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEeeC-----CEEEEecCCCCCH
Q 013204 346 DGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVSG-----DNIMMSPPFIMSP 419 (447)
Q Consensus 346 ~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~g-----~~iR~~~~~~~t~ 419 (447)
+.|+++ +..+.. ...|.++.+.+. . ....+.+.|+ ++||.+.++. +.+|++++ .++
T Consensus 311 ~~L~~~-g~~~~~--~~~~~~~~~~~~-~------------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~ 372 (389)
T 1o4s_A 311 ERLKKM-GVKFVE--PEGAFYLFFKVR-G------------DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSI 372 (389)
T ss_dssp HHHHHT-TCCCCC--CSBSSEEEEECS-S------------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCH
T ss_pred HHHHhc-CCeeec--CCcceEEEEeCC-C------------CHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCH
Confidence 888876 333221 112445555554 1 1445788887 8899998762 57999976 599
Q ss_pred HHHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKALK 434 (447)
Q Consensus 420 e~i~~~~~~l~~~l~ 434 (447)
++|++++++|+++++
T Consensus 373 ~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 373 ERLTEALDRIEDFLN 387 (389)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988764
No 74
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.9e-27 Score=234.23 Aligned_cols=356 Identities=12% Similarity=0.072 Sum_probs=224.3
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcC-CcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTL-PFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~ 108 (447)
.|+.++||..+.. .++ .+|.+.+++.+++++. ...++...+..+...++++.+.+.+. ..+++++++++||++|+
T Consensus 55 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGFF--SYS-PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCSC--SSC-CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 5778999988753 455 6899999999998751 11122111223344444444444332 23456899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcc---cCCCCCCChhHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYW---RYAHPGETEEEY 185 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 185 (447)
+.+++.+. .++++|++.++.||++.......+..... ++..... .......+ +
T Consensus 132 ~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~-------------v~~~~~~~~~~~~~~~~~---~ 187 (447)
T 3b46_A 132 LSCLMGLL--------NAGDEVIVFEPFFDQYIPNIELCGGKVVY-------------VPINPPKELDQRNTRGEE---W 187 (447)
T ss_dssp HHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEEEE-------------EEEECCGGGGTSCBCSTT---S
T ss_pred HHHHHHHc--------CCCCEEEEeCCCchhHHHHHHHcCCEEEE-------------EeCCCccccccccccccC---c
Confidence 99999773 33578999999999986554433221111 1110000 00000000 0
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccc-----
Q 013204 186 STRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD----- 260 (447)
Q Consensus 186 ~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~----- 260 (447)
..++++|++.+. +++++|++++.++.+|.+ ++.+.+++|+++|++||+++|+||+|+++.+.|....+.
T Consensus 188 -~~d~~~l~~~l~----~~~~~v~l~~p~nptG~~-~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 261 (447)
T 3b46_A 188 -TIDFEQFEKAIT----SKTKAVIINTPHNPIGKV-FTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPE 261 (447)
T ss_dssp -EECHHHHHTTCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHH
T ss_pred -ccCHHHHHHhhc----cCCeEEEEeCCCCCCCcc-cCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCC
Confidence 011366666553 356677777767767754 568999999999999999999999999887665321111
Q ss_pred cCCCCCCeeeecccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh----cHHH
Q 013204 261 KYSIKPDLVSFAKALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER----NIVE 335 (447)
Q Consensus 261 ~~~~~~d~v~~sK~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~----~~~~ 335 (447)
.++..+.+.++||.++.+++++|++++ ++++++.+... .+..+++.+++++.++.++|+....+ +..+
T Consensus 262 ~~~~~i~i~S~sK~~~~~G~riG~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~ 334 (447)
T 3b46_A 262 IGQLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKA-------HTRICFASPSPLQEACANSINDALKIGYFEKMRQ 334 (447)
T ss_dssp HHTTEEEEEEHHHHTTCTTSCCEEEECSCHHHHHHHHHH-------HHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCCcEEEEecCchhcCCcchhhEEEEeCCHHHHHHHHHH-------HhhccCCCChHHHHHHHHHHhCCcchHHHHHHHH
Confidence 223444566789999843389999999 99998887631 22346677888888888888765322 3556
Q ss_pred HHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCC-CCCC---CcchHHHHHHHHH-HcCceEEee-----
Q 013204 336 QVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNE-PFPP---EWGIGAYFGAQCE-KHGMLVRVS----- 405 (447)
Q Consensus 336 ~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~-~~~~---~~~~~~~~~~~l~-~~Gi~~~~~----- 405 (447)
+++++.+++.+.|+++ +.... .+..|.++.+++.....+.. .++. .......+.++|+ ++||++.++
T Consensus 335 ~~~~~~~~l~~~L~~~-g~~~~--~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~ 411 (447)
T 3b46_A 335 EYINKFKIFTSIFDEL-GLPYT--APEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYI 411 (447)
T ss_dssp HHHHHHHHHHHHHHHH-TCCEE--CCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSC
T ss_pred HHHHHHHHHHHHHHHC-CCeec--CCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCC
Confidence 6777777888888776 33221 23345666777653210000 0000 0012446777776 589998865
Q ss_pred -------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 013204 406 -------GDNIMMSPPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 406 -------g~~iR~~~~~~~t~e~i~~~~~~l~~ 431 (447)
.+.+|++++ .++++|++++++|++
T Consensus 412 ~~~~~~~~~~iRls~~--~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 412 KEHEKAAENLLRFAVC--KDDAYLENAVERLKL 442 (447)
T ss_dssp GGGGGGGTTEEEEECC--SCHHHHHHHHHHGGG
T ss_pred CCccCCCCCEEEEEEe--CCHHHHHHHHHHHHH
Confidence 357999965 589999999999876
No 75
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.95 E-value=5.7e-27 Score=229.48 Aligned_cols=343 Identities=15% Similarity=0.098 Sum_probs=227.9
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
+++++||.++.. ...|+.+|++.+++.+++++..... ..........++.+.+++++. .+.+++++++||++|++.+
T Consensus 31 ~~~~i~l~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~~l~~~la~~~g-~~~~~v~~~~g~~~al~~~ 107 (397)
T 2zyj_A 31 RPGILSFAGGLP-APELFPKEEAAEAAARILREKGEVA-LQYSPTEGYAPLRAFVAEWIG-VRPEEVLITTGSQQALDLV 107 (397)
T ss_dssp STTCEEESSCCC-CGGGCCHHHHHHHHHHHHHHHHHHH-TSCCCTTCCHHHHHHHHHHHT-SCGGGEEEESHHHHHHHHH
T ss_pred CCCceecCCCCC-CchhCCHHHHHHHHHHHHHhcchhh-hCCCCCCCCHHHHHHHHHHhC-CChhhEEEeccHHHHHHHH
Confidence 567899987764 3457888999999999886521000 001122345678888888873 4567999999999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
++.+. .++++|++.+++||+........ |... ..++.... + .+++
T Consensus 108 ~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~-g~~~------------~~~~~~~~------~--------~d~~ 152 (397)
T 2zyj_A 108 GKVFL--------DEGSPVLLEAPSYMGAIQAFRLQ-GPRF------------LTVPAGEE------G--------PDLD 152 (397)
T ss_dssp HHHHC--------CTTCEEEEEESCCHHHHHHHHTT-CCEE------------EEEEEETT------E--------ECHH
T ss_pred HHHhC--------CCCCEEEEeCCCcHHHHHHHHHc-CCEE------------EecCcCCC------C--------CCHH
Confidence 99763 23478999999999987555432 2211 11111000 0 1147
Q ss_pred HHHHHHHhhCCCcEEEE-EEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc-cccccCCCC---C
Q 013204 192 NLEDLILKEGPETIAAF-IAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM-FGCDKYSIK---P 266 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~v-i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~-~~~~~~~~~---~ 266 (447)
+|++.+... ++++| +++..++.+|.+ .+.+++++|.++|++||+++|+||+|+++++.|.. .....++.. +
T Consensus 153 ~l~~~l~~~---~~~~v~~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~ 228 (397)
T 2zyj_A 153 ALEEVLKRE---RPRFLYLIPSFQNPTGGL-TPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYP 228 (397)
T ss_dssp HHHHHHHHC---CCSCEEECCBSCTTTCCB-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCC
T ss_pred HHHHHHhhc---CCeEEEECCCCcCCCCCc-CCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCC
Confidence 788877641 34455 455556666654 57889999999999999999999999988766642 222222222 2
Q ss_pred C---eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh---hhcHHHHHHHH
Q 013204 267 D---LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK---ERNIVEQVNKI 340 (447)
Q Consensus 267 d---~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~---~~~~~~~~~~~ 340 (447)
+ +.++||.++.| +++|++++++++++.+... ....+++.+++++.++.++|+... -++..++++++
T Consensus 229 ~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 300 (397)
T 2zyj_A 229 GVIYLGSFSKVLSPG-LRVAFAVAHPEALQKLVQA-------KQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREK 300 (397)
T ss_dssp CEEEEEESTTTTCGG-GCCEEEECCHHHHHHHHHH-------HHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred eEEEEeccccccccc-ceeEEEecCHHHHHHHHHH-------HHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 2 34689999955 8999999999998887632 122345568888888888776321 12344555666
Q ss_pred HHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---------CCEEE
Q 013204 341 APKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---------GDNIM 410 (447)
Q Consensus 341 ~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------g~~iR 410 (447)
.+++.+.|++. +. ++....+..|.++.+.+.... ....+.+.|+++||++.++ .+.+|
T Consensus 301 ~~~l~~~L~~~~~~-g~~~~~~~~g~~~~~~~~~~~-----------~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iR 368 (397)
T 2zyj_A 301 AQAMLHALDREVPK-EVRYTRPKGGMFVWMELPKGL-----------SAEGLFRRALEENVAFVPGGPFFANGGGENTLR 368 (397)
T ss_dssp HHHHHHHHHHHSCT-TSEECCCSBSSEEEEECSTTC-----------CHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEE
T ss_pred HHHHHHHHHHHCCC-CeEEccCCccEEEEEEcCCCC-----------CHHHHHHHHHHCCCEEechHHhcCCCCCCCeEE
Confidence 66777777653 21 111112334667777765321 1456888999999999873 25799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
++++.. ++++|++++++|+++++++.
T Consensus 369 is~~~~-~~~~i~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 369 LSYATL-DREGIAEGVRRLGRALKGLL 394 (397)
T ss_dssp EECSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 998764 89999999999999997764
No 76
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.95 E-value=7.5e-27 Score=229.33 Aligned_cols=347 Identities=12% Similarity=0.049 Sum_probs=224.1
Q ss_pred CCCCEEEecCCccccc-cCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhH
Q 013204 30 VNGKKYLDSLAGLWCT-ALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEA 107 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA 107 (447)
.+|+.++||.++..+. .++ .+|++.+++.+++.+....+....+..+....+++.+.+.+. +.+.+++++++||++|
T Consensus 35 ~~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a 113 (406)
T 1xi9_A 35 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA 113 (406)
T ss_dssp HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HcCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHH
Confidence 3688999998875432 566 579999999998876432222111223344445555444332 2456799999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
++.+++.+. .++++|++.+++||+........ |... ..++.... +.+ .
T Consensus 114 l~~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~-g~~~------------~~v~~~~~----------~~~-~ 161 (406)
T 1xi9_A 114 LQLIFGALL--------DPGDEILVPGPSYPPYTGLVKFY-GGKP------------VEYRTIEE----------EDW-Q 161 (406)
T ss_dssp HHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHT-TCEE------------EEEEEEGG----------GTS-E
T ss_pred HHHHHHHhC--------CCCCEEEEcCCCCccHHHHHHHc-CCEE------------EEeecCCC----------cCC-c
Confidence 999999763 23478999999999976554432 2111 11111000 000 0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCC-
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKP- 266 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~- 266 (447)
.++++|++.+. +++++|+++++++.+|.+ ++.+.+++|.++|++||+++|+||+|+++.+.+.......++...
T Consensus 162 ~d~~~l~~~l~----~~~~~v~i~~p~nptG~~-~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 236 (406)
T 1xi9_A 162 PDIDDIRKKIT----DRTKAIAVINPNNPTGAL-YDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVP 236 (406)
T ss_dssp ECHHHHHHHCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSC
T ss_pred CCHHHHHHhhC----cCceEEEEECCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCce
Confidence 01367777664 246677777777777754 577899999999999999999999999876533332332222111
Q ss_pred Cee--eecccCCCcccceeEEE--eCh----hHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHH
Q 013204 267 DLV--SFAKALSSAYMPIGAIL--VSP----EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQ 336 (447)
Q Consensus 267 d~v--~~sK~l~gg~~~~g~~~--~~~----~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~ 336 (447)
+++ ++||.++.+++++|+++ +++ ++++.+... .... ++.+++++.++.++|+... -+++.++
T Consensus 237 ~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~-------~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 308 (406)
T 1xi9_A 237 VIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRL-------ARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKK 308 (406)
T ss_dssp EEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHH-------HHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred EEEEeccccccCCCccEEEEEEEecCchhHHHHHHHHHHH-------HHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 344 57899984348999999 898 888887632 1112 5667888888888885321 1345567
Q ss_pred HHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee-------CC
Q 013204 337 VNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS-------GD 407 (447)
Q Consensus 337 ~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------g~ 407 (447)
++++.+++.+.|++++ .+....+. |.++.+.+...... ....+.+.|+ ++||++.++ .+
T Consensus 309 ~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~ 376 (406)
T 1xi9_A 309 LKERRDYIYKRLNEIP---GISTTKPQGAFYIFPKIEVGPWK---------NDKEFVLDVLHNAHVLFVHGSGFGEYGAG 376 (406)
T ss_dssp HHHHHHHHHHHHHTST---TEECCCCCBSSEECCEECSCSCS---------SHHHHHHHHHHHHCEECEEGGGGCGGGTT
T ss_pred HHHHHHHHHHHHHhCC---CCeeecCCeeEEEEEecCccCCC---------CHHHHHHHHHHhCCEEEeCchhcCCCCCC
Confidence 7777778877777652 22222333 34444455421000 1456778887 899999875 35
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 408 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+|++++ +++++|++++++|+++++++
T Consensus 377 ~lRis~~--~~~~~i~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 377 HFRAVFL--PPIEILEEAMDRFEKFMKER 403 (406)
T ss_dssp BEEEECC--SCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEec--CCHHHHHHHHHHHHHHHHHH
Confidence 7999976 89999999999999998764
No 77
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.95 E-value=5.1e-27 Score=230.36 Aligned_cols=339 Identities=10% Similarity=0.041 Sum_probs=218.8
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcCc-CCC-CeEEEeCChhhH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFTA-SKM-AKVFFTNSGSEA 107 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~-~~v~~~~sGseA 107 (447)
.|++++||.++.. .+| .+|.+.+++.+++++.. ..+....+..+....+++.+.+.+.. .++ +++++++||++|
T Consensus 45 ~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~a 121 (404)
T 2o1b_A 45 GPLPLINMAVGIP--DGP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNG 121 (404)
T ss_dssp CSSCCEECCCCSC--SSC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHH
T ss_pred CCCCEEecCCcCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHH
Confidence 4788999988763 567 68999999999885421 11111111223333344444333232 233 689999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEEYS 186 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 186 (447)
++.+++.+. .++++|++.+++||+........+ .... .++... .+. .+
T Consensus 122 l~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~g-~~~~------------~v~~~~~~~~-----~d----- 170 (404)
T 2o1b_A 122 LVAVPTCVI--------NPGDYVLLPDPGYTDYLAGVLLAD-GKPV------------PLNLEPPHYL-----PD----- 170 (404)
T ss_dssp HHHHHHHHC--------CTTCEEEEEESCCSSHHHHHHHTT-CEEE------------EEECCTTTCC-----CC-----
T ss_pred HHHHHHHhc--------CCCCEEEEcCCCchhHHHHHHHCC-CEEE------------EeccCcccCc-----CC-----
Confidence 999999763 234789999999999876554322 2111 111110 000 00
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccc-ccC---
Q 013204 187 TRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGC-DKY--- 262 (447)
Q Consensus 187 ~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~-~~~--- 262 (447)
+++|++.+. .++++|+++..++.+|.+ .+.+++++|.++|++||+++|+||+|+++.+.|..... ...
T Consensus 171 ---~~~l~~~l~----~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 242 (404)
T 2o1b_A 171 ---WSKVDSQII----DKTKLIYLTYPNNPTGST-ATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGK 242 (404)
T ss_dssp ---GGGSCHHHH----HHEEEEEECSSCTTTCCC-CCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHH
T ss_pred ---HHHHHHhhc----cCceEEEEcCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCC
Confidence 255666554 245667766556666654 57889999999999999999999999988655532111 111
Q ss_pred CCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHH
Q 013204 263 SIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKI 340 (447)
Q Consensus 263 ~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~ 340 (447)
+....+.++||.++.+++++|++++++++++.+... ....+++.++++++++.++|+... -++..++++++
T Consensus 243 ~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 315 (404)
T 2o1b_A 243 DVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQALKKY-------QTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTR 315 (404)
T ss_dssp HHEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHH-------HHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCEEEEEecchhccCchhheEeEecCHHHHHHHHHH-------HhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 112334578999974338999999999998887632 222356778899988888887521 13345566677
Q ss_pred HHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee-------CCEEEE
Q 013204 341 APKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS-------GDNIMM 411 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------g~~iR~ 411 (447)
.+++.+.|+++ +.. ...+. |.++.+.+.... ....+.++|+ ++||++.++ .+.+|+
T Consensus 316 ~~~l~~~L~~~-g~~---~~~~~~g~~~~~~~~~~~-----------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi 380 (404)
T 2o1b_A 316 RDRFEAMLAKA-DLP---FVHAKGGIYVWLETPPGY-----------DSEQFEQFLVQEKSILVAPGKPFGENGNRYVRI 380 (404)
T ss_dssp HHHHHHHHHHT-TCC---EECCCBSSEEEEECCTTC-----------CHHHHHHHHHHHHCEECEESGGGCGGGTTEEEE
T ss_pred HHHHHHHHHhc-CCe---ecCCCcceEEEEeCCCCC-----------CHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEE
Confidence 77777777765 222 22333 445667765321 1345777877 579999875 357999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+++. ++++|++++++|++++++
T Consensus 381 s~~~--~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 381 SLAL--DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp ECCS--CTTHHHHHHHHHHGGGGG
T ss_pred EEcC--CHHHHHHHHHHHHHHHHh
Confidence 9764 889999999999988754
No 78
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.95 E-value=7.2e-27 Score=227.47 Aligned_cols=331 Identities=15% Similarity=0.100 Sum_probs=221.7
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVK 113 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~ 113 (447)
.++||.++. ..++ .+|.+.+++.+++++. ..+. ......++.+.+++++. .+++++++++||++|++.+++
T Consensus 26 ~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~-~~y~----~~~~~~~l~~~la~~~~-~~~~~v~~~~g~~~a~~~~~~ 96 (381)
T 1v2d_A 26 GAVNLGQGF--PSNP-PPPFLLEAVRRALGRQ-DQYA----PPAGLPALREALAEEFA-VEPESVVVTSGATEALYVLLQ 96 (381)
T ss_dssp TCEECCCCS--CSSC-CCHHHHHHHHHHTTTS-CSCC----CTTCCHHHHHHHHHHHT-SCGGGEEEESSHHHHHHHHHH
T ss_pred CeEEecCCC--CCCC-CCHHHHHHHHHHHHHh-cCCC----CCCCCHHHHHHHHHhcC-CChhhEEEcCChHHHHHHHHH
Confidence 478998775 3456 6899999999988752 1111 22245678888888863 456689999999999999999
Q ss_pred HHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC---CcccCCCCCCChhHHHHHHH
Q 013204 114 LVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP---HYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 114 ~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 190 (447)
.+. .++++|++.+++||+....... .|... ..++.+ +.+. .++
T Consensus 97 ~~~--------~~gd~Vl~~~~~~~~~~~~~~~-~g~~~------------~~v~~~~~~~~~~-------------~d~ 142 (381)
T 1v2d_A 97 SLV--------GPGDEVVVLEPFFDVYLPDAFL-AGAKA------------RLVRLDLTPEGFR-------------LDL 142 (381)
T ss_dssp HHC--------CTTCEEEEEESCCTTHHHHHHH-TTCEE------------EEEECEEETTEEE-------------CCH
T ss_pred HhC--------CCCCEEEEcCCCchhHHHHHHH-cCCEE------------EEEeCCCCCccCC-------------cCH
Confidence 773 3357899999999998654332 22211 111211 0000 013
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc-ccc-c-cCCCCCC
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM-FGC-D-KYSIKPD 267 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~-~~~-~-~~~~~~d 267 (447)
++|++.+. +++++|+++++++.+|.+ .+.+++++|.++|++||+++|+||+|+++.. |.. ... . ..+..++
T Consensus 143 ~~l~~~l~----~~~~~v~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~ 216 (381)
T 1v2d_A 143 SALEKALT----PRTRALLLNTPMNPTGLV-FGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFT 216 (381)
T ss_dssp HHHHTTCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEE
T ss_pred HHHHHhcC----cCCEEEEECCCCCCCCCc-cCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEE
Confidence 66666553 356777777777777755 5678999999999999999999999998744 431 111 1 2344455
Q ss_pred eeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--h--hcHHHHHHHHHHH
Q 013204 268 LVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--E--RNIVEQVNKIAPK 343 (447)
Q Consensus 268 ~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~--~~~~~~~~~~~~~ 343 (447)
+.++||.++.+++|+|++++++++++.+... ....+++.++++++++.++|+... + ++..++++++.++
T Consensus 217 ~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 289 (381)
T 1v2d_A 217 VGSAGKRLEATGYRVGWIVGPKEFMPRLAGM-------RQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDL 289 (381)
T ss_dssp EEEHHHHTTCGGGCCEEEECCTTTHHHHHHH-------HHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred EeechhhcCCcccceEEEEeCHHHHHHHHHH-------HhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 6678999874348999999999988877532 222356778888888888888552 1 3456677778888
Q ss_pred HHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---------CCEEEEecC
Q 013204 344 FQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---------GDNIMMSPP 414 (447)
Q Consensus 344 l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------g~~iR~~~~ 414 (447)
+.+.|+++ +..+.. ...|.++.+.+... . +.+.+.++||++.++ .+.+|++++
T Consensus 290 l~~~L~~~-g~~~~~--~~~~~~~~~~~~~~--------------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~ 351 (381)
T 1v2d_A 290 LAGGLRAM-GLRVYV--PEGTYFLMAELPGW--------------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFC 351 (381)
T ss_dssp HHHHHHHT-TCCEEC--CSBSSEEEEECTTC--------------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECC
T ss_pred HHHHHHHC-CCEecC--CCcceEEEEecChH--------------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeC
Confidence 88888774 332221 12245666655421 1 456678899999874 357999976
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013204 415 FIMSPEEVDELISKYGKALKATEERV 440 (447)
Q Consensus 415 ~~~t~e~i~~~~~~l~~~l~~~~~~~ 440 (447)
. ++++|++++++|++++++.++..
T Consensus 352 ~--~~~~i~~~~~~l~~~l~~~r~~~ 375 (381)
T 1v2d_A 352 K--TEEELHLALERLGRVVNSPREAE 375 (381)
T ss_dssp S--CHHHHHHHHHHHHHHC-------
T ss_pred C--CHHHHHHHHHHHHHHHhhccccc
Confidence 4 99999999999999998876543
No 79
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.95 E-value=1.6e-26 Score=226.23 Aligned_cols=339 Identities=11% Similarity=0.078 Sum_probs=221.4
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC----cccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP----FYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGS 105 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGs 105 (447)
+++.++||+++ .+....+|++.+++.+++.+.. ..+....+..+....+++.+.+.+. +.+++++++++||+
T Consensus 33 ~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~ 109 (398)
T 3ele_A 33 GKENVYDFSIG---NPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAA 109 (398)
T ss_dssp CGGGCEECCSC---CCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHH
T ss_pred CCCCeEEeecC---CCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHH
Confidence 35789999887 3333378999999999987632 1121112233445555666555543 24678999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhH
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEE 184 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 184 (447)
+|+..+++.+. ++++++|++.+++|++........+... ..++... .+. .
T Consensus 110 ~al~~~~~~l~-------~~g~d~vl~~~p~~~~~~~~~~~~g~~~-------------~~v~~~~~~~~-----~---- 160 (398)
T 3ele_A 110 ASLSICFRALT-------SDAYDEFITIAPYFPEYKVFVNAAGARL-------------VEVPADTEHFQ-----I---- 160 (398)
T ss_dssp HHHHHHHHHHC-------CSTTCEEEEESSCCTHHHHHHHHTTCEE-------------EEECCCTTTSS-----C----
T ss_pred HHHHHHHHHHc-------CCCCCEEEEeCCCchhhHHHHHHcCCEE-------------EEEecCCcCCc-----C----
Confidence 99999999773 1233789999999999865544332211 1111110 000 0
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHh------cCCEEEEehhhcCCCccccccc
Q 013204 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKK------YDILFIADEVICAFGRLGTMFG 258 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~------~g~~li~DEv~~g~g~~g~~~~ 258 (447)
++++|++.+. +++++|+++..++.+|. ..+.+.+++|+++|++ ||+++|+||+|+++.+.|....
T Consensus 161 ----d~~~l~~~l~----~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~ 231 (398)
T 3ele_A 161 ----DFDALEERIN----AHTRGVIINSPNNPSGT-VYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVP 231 (398)
T ss_dssp ----CHHHHHHTCC----TTEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCC
T ss_pred ----CHHHHHHHhC----cCCCEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcC
Confidence 1366776654 24666666555666665 4567789999999999 9999999999998876664322
Q ss_pred --cccCCCCCCeeeecccCCCcccceeEEEeChhHHH------HhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 259 --CDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSE------VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 259 --~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
...++....+.++||.++.+++++|++++++++++ .+... .....+++.+++++.++.+.++ .
T Consensus 232 ~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~---~ 302 (398)
T 3ele_A 232 FVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGA------GRALGYVCAPSLFQKMIVKCQG---A 302 (398)
T ss_dssp CGGGTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHH------HHHTTCCCSCHHHHHHHTTCTT---C
T ss_pred ChHhhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHH------hhhccccCCCHHHHHHHHHHhc---C
Confidence 22333223344789999833389999999887432 22210 0112355666777776655554 3
Q ss_pred hcHHHHHHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---
Q 013204 331 RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--- 406 (447)
Q Consensus 331 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--- 406 (447)
.+..++++++.+++.+.|+++ +..+ ..+. |.++.+.+.... ...+.+.|.++||++.++.
T Consensus 303 ~~~~~~~~~~~~~l~~~L~~~-g~~~---~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gi~v~~g~~~~ 366 (398)
T 3ele_A 303 TGDINAYKENRDLLYEGLTRI-GYHC---FKPDGAFYMFVKALEDD------------SNAFCEKAKEEDVLIVAADGFG 366 (398)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-TCCE---ECCSBSSEEEEECSSSC------------HHHHHHHHHTTTEECEESGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCee---cCCCeeEEEEEEcCCCC------------HHHHHHHHHHCCEEEeCccccC
Confidence 345678888889999988876 2222 2233 344566654321 4567888999999998763
Q ss_pred --CEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 407 --DNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 407 --~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+.+|+++ .+++++|++++++|++++++++
T Consensus 367 ~~~~iRis~--~~~~e~i~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 367 CPGWVRISY--CVDREMIKHSMPAFEKIYKKYN 397 (398)
T ss_dssp CTTEEEEEC--CSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEe--cCCHHHHHHHHHHHHHHHHHhh
Confidence 6799995 4899999999999999987753
No 80
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.95 E-value=3.3e-26 Score=227.34 Aligned_cols=346 Identities=11% Similarity=0.082 Sum_probs=224.7
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC---cccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP---FYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAN 108 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~ 108 (447)
+..++||.++.... .++.++++.+++.+++++.. ..+....+..+....+++.+.+.+...+.+++++++||++|+
T Consensus 75 ~~~~i~l~~g~p~~-~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al 153 (448)
T 3aow_A 75 TSDIISLAGGLPNP-KTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL 153 (448)
T ss_dssp TSSSEECCCCCCCG-GGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred CCCcEeCCCCCCCc-hhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence 34689998886533 34678899999999886531 111111122333334444443332311568999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
+.+++++. .+++.|++.+++|++........ |... ..++.... + .
T Consensus 154 ~~~~~~l~--------~~Gd~Vlv~~p~y~~~~~~~~~~-g~~~------------~~v~~~~~------g--------~ 198 (448)
T 3aow_A 154 DLIGRVFL--------NPGDIVVVEAPTYLAALQAFNFY-EPQY------------IQIPLDDE------G--------M 198 (448)
T ss_dssp HHHHHHHC--------CTTCEEEEEESCCHHHHHHHHTT-CCEE------------EEEEEETT------E--------E
T ss_pred HHHHHHHc--------CCCCEEEEeCCChHHHHHHHHHc-CCEE------------EEeccCCC------C--------C
Confidence 99999873 23478999999999986554432 2111 11111000 0 1
Q ss_pred HHHHHHHHHHhh--CCCcEEEEEE-ccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc----cccc
Q 013204 189 LANNLEDLILKE--GPETIAAFIA-EPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF----GCDK 261 (447)
Q Consensus 189 ~~~~le~~l~~~--~~~~~a~vi~-epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~----~~~~ 261 (447)
++++|++.+... ...++++|++ ...++.+|.+ .+.+.+++|.++|++||+++|+||+|+++.+.|... .++.
T Consensus 199 d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~-~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~ 277 (448)
T 3aow_A 199 KVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVT-MNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDN 277 (448)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCT
T ss_pred CHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCC-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCC
Confidence 147777777521 1125677644 4445556644 678999999999999999999999999886655421 1222
Q ss_pred CCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh----hhcHHHHH
Q 013204 262 YSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK----ERNIVEQV 337 (447)
Q Consensus 262 ~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~----~~~~~~~~ 337 (447)
.+...++.+|||.++.| +|+|++++++++++.+... ....+++.+++++.++.++|+... -++..+.+
T Consensus 278 ~~~vi~~~S~SK~~~~G-lriG~v~~~~~l~~~l~~~-------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~ 349 (448)
T 3aow_A 278 EGRVIYLGTFSKILAPG-FRIGWMVGDPGIIRKMEIA-------KQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFY 349 (448)
T ss_dssp TSCEEEEEESTTTTCGG-GCCEEEEECHHHHHHHHHH-------HHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCCEEEEccchhhcccc-ccEEEEEeCHHHHHHHHHH-------HHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 22334566899999855 8999999999998887632 222355668888888888886421 12334555
Q ss_pred HHHHHHHHHhHhhc-cCCCceeeEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---------C
Q 013204 338 NKIAPKFQDGVKAF-SDSPIIGEIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---------G 406 (447)
Q Consensus 338 ~~~~~~l~~~L~~l-~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------g 406 (447)
+++.+.+.+.|++. +. .+..+. ..|.++++.+.... ....+.++|+++||++.++ .
T Consensus 350 ~~~~~~l~~~L~~~~~~--g~~~~~p~~g~~~~v~~~~~~-----------~~~~l~~~l~~~gV~v~pg~~f~~~~~~~ 416 (448)
T 3aow_A 350 KPRRDAMLEALEEFMPE--GVKWTKPEGGMFIWVTLPDGI-----------DSKKMLERAIKKGVAYVPGEAFYAHRDVK 416 (448)
T ss_dssp HHHHHHHHHHHHHHCCT--TCEECCCSBSSEEEEECSTTC-----------CHHHHHHHHHHTTEECEEGGGGSTTCCCC
T ss_pred HHHHHHHHHHHHHhCCC--CeEEeCCCccEEEEEEcCCCC-----------CHHHHHHHHHHCCcEEEcchhhcCCCCCC
Confidence 56677777777653 21 122222 33667777775321 1456888999999999874 2
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+.+|++++. .++++|++++++|++++++.
T Consensus 417 ~~iRls~~~-~~~e~i~~~~~~L~~~l~~~ 445 (448)
T 3aow_A 417 NTMRLNFTY-VDEDKIMEGIKRLAETIKEE 445 (448)
T ss_dssp SEEEEECSS-SCTHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence 569999775 48999999999999998764
No 81
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.92 E-value=3.2e-30 Score=252.19 Aligned_cols=353 Identities=10% Similarity=0.059 Sum_probs=225.2
Q ss_pred eEEEEecCcEEEeCCCC--EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC---
Q 013204 17 LVIEKSEGSYVYDVNGK--KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT--- 91 (447)
Q Consensus 17 ~~~~~~~g~~~~d~dg~--~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--- 91 (447)
++-.+++|+++||.||+ .++||..+. ..++ .+|++.+++.+++.+....+. . ...++.+.+++++.
T Consensus 13 ~~~~~~~g~~~~d~~g~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~-----~-~~~~l~~~la~~l~~~~ 83 (392)
T 3b1d_A 13 APNRLSHHTYKWKETETDPQLLPAWIAD--MDFE-VMPEVKQAIHDYAEQLVYGYT-----Y-ASDELLQAVLDWEKSEH 83 (392)
Confidence 44567999999999999 999997764 3455 589999999998865322221 1 13344455544431
Q ss_pred c--CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC
Q 013204 92 A--SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC 169 (447)
Q Consensus 92 ~--~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
+ .+.+++++++||++|++.+++.+. .++++|++.+++||+........+... ..++.
T Consensus 84 g~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~-------------~~~~~ 142 (392)
T 3b1d_A 84 QYSFDKEDIVFVEGVVPAISIAIQAFT--------KEGEAVLINSPVYPPFARSVRLNNRKL-------------VSNSL 142 (392)
Confidence 1 356789999999999999999774 234789999999999865443322111 01111
Q ss_pred CCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC
Q 013204 170 PHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA 249 (447)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g 249 (447)
.+. . ..+ ..+++++++.+.. .++++|+++..++.+|. .++.+++++|+++|++||+++|+||+|++
T Consensus 143 ~~~-------~--g~~-~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~ 208 (392)
T 3b1d_A 143 KEE-------N--GLF-QIDFEQLENDIVE---NDVKLYLLCNPHNPGGR-VWEREVLEQIGHLCQKHHVILVSDEIHQD 208 (392)
Confidence 000 0 000 0124667766642 23456666666666665 45678899999999999999999999999
Q ss_pred CCcccccc----cccc--CCCCCCeeeecccCCCcccceeEEEeCh-hHHHHhhhccCCCCccCcCCCC-CCcHHHHHHH
Q 013204 250 FGRLGTMF----GCDK--YSIKPDLVSFAKALSSAYMPIGAILVSP-EVSEVIHSQSNTLGSFSHGFTY-SGHPVSCAVA 321 (447)
Q Consensus 250 ~g~~g~~~----~~~~--~~~~~d~v~~sK~l~gg~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~~aa 321 (447)
+++.|... .+.. .+..+++.++||.++.+++|+|++++++ ++++.+... ....++ +.++++++++
T Consensus 209 ~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~ 281 (392)
T 3b1d_A 209 LTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQ-------QLVNNHHEVSSLGYIAT 281 (392)
Confidence 87766321 1111 3334556789999983338999999875 488777531 222222 4578888888
Q ss_pred HHHHHHHhh--hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEE-EEeecCCCCCCCCCCCcchHHHHHHHHH-H
Q 013204 322 IEALKIYKE--RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILG-TEFADNKSPNEPFPPEWGIGAYFGAQCE-K 397 (447)
Q Consensus 322 ~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 397 (447)
.++|+...+ ++..+.++++.+++.+.|++. .+.+..+.+.|.++. +++..... ....+.+.|+ +
T Consensus 282 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~i~~~~~~~----------~~~~l~~~l~~~ 349 (392)
T 3b1d_A 282 ETAYRYGKPWLVALKAVLEENIQFAVEYFAQE--APRLKVMKPQGTYLIWLDFSDYGL----------TDDALFTLLHDQ 349 (392)
Confidence 888873211 223344444555555555441 233334455666554 56643110 0234677786 7
Q ss_pred cCceEEee-------CCEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 398 HGMLVRVS-------GDNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 398 ~Gi~~~~~-------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
+||++.++ .+.+|++ +..++++|++++++|+++++
T Consensus 350 ~gi~v~~g~~f~~~~~~~iRi~--~~~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 350 AKVILNRGSDYGSEGELHARLN--IAAPKSLVEEICKRIVCCLP 391 (392)
Confidence 89999864 2469999 55678999999999998775
No 82
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.95 E-value=2.8e-26 Score=227.42 Aligned_cols=346 Identities=11% Similarity=0.006 Sum_probs=227.4
Q ss_pred cEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcC-----cCCCCeE
Q 013204 25 SYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFT-----ASKMAKV 98 (447)
Q Consensus 25 ~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~v 98 (447)
..+.+.+|+.++||+++. ++++ .+|++.+++.+++.+.. ..+.. .....++.+.+++++. ....+++
T Consensus 36 ~~~~~~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~----~~g~~~lr~~la~~~~~~~g~~~~~~~i 108 (437)
T 3g0t_A 36 TNLEKATGTKFCRMEMGV--PGLP-APQIGIETEIQKLREGVASIYPN----LDGLPELKQEASRFAKLFVNIDIPARAC 108 (437)
T ss_dssp HHHHHHHTCCCEECCCCS--CCSC-CCHHHHHHHHHHHHHTGGGSCCC----TTCCHHHHHHHHHHHHHHHCCCCCGGGE
T ss_pred HHHHHhcCCCEEeccCcC--CCCC-CCHHHHHHHHHHHhCCcCcCCCC----CCChHHHHHHHHHHHHHhhCCCCCcccE
Confidence 344556789999998886 3555 78999999999987522 22211 1112344455554442 1356799
Q ss_pred EEeCChhhHHHHHHHHHHHHHHhcCCCCcc--eEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCC
Q 013204 99 FFTNSGSEANDTQVKLVWYYNNALGRPNKK--KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYA 176 (447)
Q Consensus 99 ~~~~sGseA~~~Al~~~~~~~~~~~~~~~~--~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (447)
++++||++|++.+++.+... ++ ++ +|++.+++|++........+.... .++..+
T Consensus 109 ~~t~g~t~al~~~~~~l~~~-----~~-gd~~~Vl~~~p~~~~~~~~~~~~g~~~~-------------~v~~~~----- 164 (437)
T 3g0t_A 109 VPTVGSMQGCFVSFLVANRT-----HK-NREYGTLFIDPGFNLNKLQCRILGQKFE-------------SFDLFE----- 164 (437)
T ss_dssp EEESHHHHHHHHHHHHHTTS-----CT-TCSCCEEEEESCCHHHHHHHHHHTCCCE-------------EEEGGG-----
T ss_pred EEeCCHHHHHHHHHHHHhcC-----CC-CCccEEEEeCCCcHhHHHHHHHcCCEEE-------------EEeecC-----
Confidence 99999999999999976300 13 35 799999999998655544332211 111100
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc
Q 013204 177 HPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM 256 (447)
Q Consensus 177 ~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~ 256 (447)
+.+ ..++++|++.+.. ++..+++++.| ++.+|. ..+.+.+++|+++|++||+++|+||+|+++...+..
T Consensus 165 ------~~~-~~d~~~l~~~l~~--~~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~ 233 (437)
T 3g0t_A 165 ------YRG-EKLREKLESYLQT--GQFCSIIYSNP-NNPTWQ-CMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDY 233 (437)
T ss_dssp ------GCT-THHHHHHHHHHTT--TCCCEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCC
T ss_pred ------CCC-ccCHHHHHHHHhc--CCceEEEEeCC-CCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCc
Confidence 000 1235778877732 22333445566 555554 457788999999999999999999999976544321
Q ss_pred cc-------ccc---CCCCCCeeeecccCCCcccceeEEEeChhHHH-H-----------------hhhccCCCCccCcC
Q 013204 257 FG-------CDK---YSIKPDLVSFAKALSSAYMPIGAILVSPEVSE-V-----------------IHSQSNTLGSFSHG 308 (447)
Q Consensus 257 ~~-------~~~---~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~-~-----------------~~~~~~~~~~~~~~ 308 (447)
.. ... .+....+.++||.++.+++++|++++++++++ . +. .....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 306 (437)
T 3g0t_A 234 SHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSS-------SALYA 306 (437)
T ss_dssp CSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHT-------THHHH
T ss_pred CcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHH-------HHHhh
Confidence 11 111 11112234689999833389999999999888 6 43 12223
Q ss_pred CCCCCcHHHHHHHHHHHHHHh-----hhcHHHHHHHHHHHHHHhHhhccCCCceee------Ee-eeeeEEEEEeecCCC
Q 013204 309 FTYSGHPVSCAVAIEALKIYK-----ERNIVEQVNKIAPKFQDGVKAFSDSPIIGE------IR-GTGLILGTEFADNKS 376 (447)
Q Consensus 309 ~t~~~~~~~~~aa~a~l~~~~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~------~~-~~g~~~~i~~~~~~~ 376 (447)
.+++.+++++.++.++|+... -++..++++++.+++++.|+++ ++... .+ ..+.++.+.+...
T Consensus 307 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~-- 381 (437)
T 3g0t_A 307 LSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN---GFNIVYDKDGNEPLADGFYFTVGYKGM-- 381 (437)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT---TEEESSCEETTEECCSSSEEEEEETTC--
T ss_pred hcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc---CCEEeccccCCCCCceeEEEEEecCCC--
Confidence 466788999999998888654 3456677777888888888775 22111 13 4566667776511
Q ss_pred CCCCCCCCcchHHHHHHHHHHcCceEEeeC-------CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 377 PNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
....+.+.|+++||.+.++. +.+|++++. .++++|++++++|++++++
T Consensus 382 ----------~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 382 ----------DSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSL-LPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp ----------CHHHHHHHHHHTTEECEESTTTTCCCTTCEEEECSS-SCGGGHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEec-CCHHHHHHHHHHHHHHHhc
Confidence 14568899999999999874 569999884 4999999999999987753
No 83
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.95 E-value=2.6e-26 Score=221.75 Aligned_cols=326 Identities=14% Similarity=0.105 Sum_probs=218.8
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
.+|+.++||+++. ++++ .+|++.+++.+++.+.... ....+.....++++++++++. .+.+++++++||++|++
T Consensus 23 ~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~--~~~y~~~~~~~lr~~la~~~g-~~~~~i~~t~g~~~al~ 96 (360)
T 3hdo_A 23 PDIASWIKLNTNE--NPYP-PSPEVVKAILEELGPDGAA--LRIYPSASSQKLREVAGELYG-FDPSWIIMANGSDEVLN 96 (360)
T ss_dssp SCCTTSEECSSCC--CSSC-CCHHHHHHHHHHHTTTCGG--GGSCCCSSCHHHHHHHHHHHT-CCGGGEEEESSHHHHHH
T ss_pred ccccceeeccCCC--CCCC-CCHHHHHHHHHHHhcccch--hhcCCCCchHHHHHHHHHHhC-cCcceEEEcCCHHHHHH
Confidence 5788999998875 4555 7899999999998763110 011122334688888888873 46779999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.+++.+. ..+++|++.+++|++........+.... .++..+.+.
T Consensus 97 ~~~~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~-------------~v~~~~~~~--------------- 140 (360)
T 3hdo_A 97 NLIRAFA--------AEGEEIGYVHPSYSYYGTLAEVQGARVR-------------TFGLTGDFR--------------- 140 (360)
T ss_dssp HHHHHHC--------CTTCEEEEESSSCTHHHHHHHHHTCEEE-------------EECBCTTSS---------------
T ss_pred HHHHHHh--------CCCCEEEEcCCChHHHHHHHHHCCCEEE-------------EeeCCCCCC---------------
Confidence 9999763 2347899999999998655444332211 111111110
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV 269 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v 269 (447)
++++.....+ .+++++..++.+|.+.+ ++++.++|+++|+++|+||+|++|...+........+....+.
T Consensus 141 ---~~~l~~~~~~---~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~ 210 (360)
T 3hdo_A 141 ---IAGFPERYEG---KVFFLTTPNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTR 210 (360)
T ss_dssp ---BTTCCSSBCS---SEEEEESSCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEE
T ss_pred ---HHHHHhhcCC---CEEEEeCCCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEe
Confidence 0111111112 25555555666777776 7889999999999999999999773322111112222223344
Q ss_pred eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHhH
Q 013204 270 SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQDGV 348 (447)
Q Consensus 270 ~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~~L 348 (447)
++||.++.+++++|++++++++++.+... ..+++.++++++++.++|+..+ -++..++++++.+++.+.|
T Consensus 211 s~sK~~g~~G~r~G~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L 281 (360)
T 3hdo_A 211 TLSKSYSLAGMRIGLAIARPEVIAALDKI---------RDHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTEL 281 (360)
T ss_dssp ESTTTTSCTTSCCEEEECCHHHHHHHHHH---------SCSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHhhcCCccceeeEeeCHHHHHHHHHh---------CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999874448999999999999988642 1346788999999888887422 1345566677777777777
Q ss_pred hhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----CEEEEecCCCCCHHHHH
Q 013204 349 KAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----DNIMMSPPFIMSPEEVD 423 (447)
Q Consensus 349 ~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----~~iR~~~~~~~t~e~i~ 423 (447)
+++ ++ ....+.|.++.+.+... ....+.+.|.++||++.+++ +.+|++. .++++++
T Consensus 282 ~~~---~~-~~~~~~~~~~~~~~~~~------------~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~---~~~~e~~ 342 (360)
T 3hdo_A 282 RSI---GY-DVIPSQGNYLFATPPDR------------DGKRVYDGLYARKVLVRHFSDPLLAHGMRISI---GTREEME 342 (360)
T ss_dssp HHT---TC-EECCCSSSEEEEECTTC------------CHHHHHHHHHHTTEECBCCCSTTTTTSEEEEC---CCHHHHH
T ss_pred HHC---CC-EEcCCCccEEEEECCCC------------CHHHHHHHHHHCCEEEEECCCCCCCCEEEEEc---CCHHHHH
Confidence 765 22 22355667766655421 14568889999999998764 5799994 3999999
Q ss_pred HHHHHHHHHHHH
Q 013204 424 ELISKYGKALKA 435 (447)
Q Consensus 424 ~~~~~l~~~l~~ 435 (447)
+++++|+++.+.
T Consensus 343 ~l~~al~~~~~~ 354 (360)
T 3hdo_A 343 QTLAALKEIGEG 354 (360)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhcc
Confidence 999999877643
No 84
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.95 E-value=2.1e-25 Score=216.10 Aligned_cols=324 Identities=14% Similarity=0.117 Sum_probs=217.4
Q ss_pred EecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhc-----CcCCCCeEEEeCChhhHHHH
Q 013204 36 LDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMF-----TASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 36 lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~~v~~~~sGseA~~~ 110 (447)
+||.++. +++| .+|++.+++.+++.+.... ....+.....++.+.+++++ .+.+.+++++++|+++|++.
T Consensus 33 idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~--~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~ 107 (369)
T 3cq5_A 33 IRLNTNE--NPYP-PSEALVADLVATVDKIATE--LNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQ 107 (369)
T ss_dssp EECSSCC--CCSC-CCHHHHHHHHHHHHHHGGG--TTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHH
T ss_pred eeccCCC--CCCC-CCHHHHHHHHHHHHhcccc--cccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHH
Confidence 8998775 3577 7899999999988652100 00111111245666666652 13356789999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
+++.+. .++++|++.+++||+........+. .. ..++..+.+. . ++
T Consensus 108 ~~~~l~--------~~gd~Vl~~~~~y~~~~~~~~~~g~-~~------------~~v~~~~~~~-----~--------d~ 153 (369)
T 3cq5_A 108 LLQAFG--------GPGRTALGFQPSYSMHPILAKGTHT-EF------------IAVSRGADFR-----I--------DM 153 (369)
T ss_dssp HHHHHC--------STTCEEEEEESSCTHHHHHHHHTTC-EE------------EEEECCTTSS-----C--------CH
T ss_pred HHHHhc--------CCCCEEEEcCCChHHHHHHHHHcCC-EE------------EEecCCcCCC-----C--------CH
Confidence 998763 2347899999999998655443322 11 1111111000 0 13
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccc-ccCC-CCCCe
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGC-DKYS-IKPDL 268 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~-~~~~-~~~d~ 268 (447)
+++++.+... ++++|+++++++.+|.+.+ ++++.++|+.+++++|+||+|+++++....... +.++ ....+
T Consensus 154 ~~l~~~i~~~---~~~~v~~~~~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~ 226 (369)
T 3cq5_A 154 DVALEEIRAK---QPDIVFVTTPNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVS 226 (369)
T ss_dssp HHHHHHHHHH---CCSEEEEESSCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEE
T ss_pred HHHHHHhhcc---CCCEEEEeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEE
Confidence 7777777632 3457777888888887766 678888888888999999999987643211111 2222 22345
Q ss_pred eeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHh
Q 013204 269 VSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQDG 347 (447)
Q Consensus 269 v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~~ 347 (447)
.++||.++.+++|+|++++++++++.+... ..+++.++++++++.++++..+ -++..++++++.+++.+.
T Consensus 227 ~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~---------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 297 (369)
T 3cq5_A 227 RTMSKAFDFAGGRLGYFVANPAFIDAVMLV---------RLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAAR 297 (369)
T ss_dssp EESSSTTSCGGGCCEEEEECTHHHHHHHTT---------SCTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHH
T ss_pred EechHhcCCcccceEEEEeCHHHHHHHHHc---------CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 578999984348999999999998888632 1245688999998888887432 134567777788888888
Q ss_pred HhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee--CCEEEEecCCCCCHHHHHHH
Q 013204 348 VKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS--GDNIMMSPPFIMSPEEVDEL 425 (447)
Q Consensus 348 L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--g~~iR~~~~~~~t~e~i~~~ 425 (447)
|++. .. ...++.|.++.+.+.. ....+.+.|.++||.+.++ .+.+|++++ ++++++++
T Consensus 298 L~~~-g~---~~~~~~~~~~~~~~~~-------------~~~~l~~~l~~~gi~v~~~~~~~~iRis~~---~~~~i~~~ 357 (369)
T 3cq5_A 298 LEEL-GY---AVVPSESNFVFFGDFS-------------DQHAAWQAFLDRGVLIRDVGIAGHLRTTIG---VPEENDAF 357 (369)
T ss_dssp HHHH-TC---EEECCSSSEEEEECCS-------------SHHHHHHHHHHTTEECBCCSCTTEEEEECC---CHHHHHHH
T ss_pred HHhC-CC---EECCCCCeEEEEECCC-------------CHHHHHHHHHHCCEEEEECCCCCeEEEEeC---CHHHHHHH
Confidence 8764 22 2234566777776541 1445788899999999886 367999965 89999999
Q ss_pred HHHHHHHHH
Q 013204 426 ISKYGKALK 434 (447)
Q Consensus 426 ~~~l~~~l~ 434 (447)
+++|+++++
T Consensus 358 ~~~l~~~~~ 366 (369)
T 3cq5_A 358 LDAAAEIIK 366 (369)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988763
No 85
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.95 E-value=1.6e-26 Score=228.73 Aligned_cols=346 Identities=10% Similarity=0.073 Sum_probs=221.8
Q ss_pred CEEEecCCccccccCCCCCHHH--HHHHHHHHhc-CCcccccCcCCChHHHHHHHHHHHhc----CcCCCCe---EEEeC
Q 013204 33 KKYLDSLAGLWCTALGGSEPRL--VAAATAQLNT-LPFYHSFWNRTTKPSLDLAKELLEMF----TASKMAK---VFFTN 102 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v--~~a~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~---v~~~~ 102 (447)
+.++||.++... .+|. +|.+ .+++.+++.. ....+. +.....++.+.+++++ .+.++++ +++++
T Consensus 47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~~~~~y~----~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~ 120 (430)
T 2x5f_A 47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPDEIFPYA----PPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTN 120 (430)
T ss_dssp TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGGGTSSCC----CTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEES
T ss_pred CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCcccccccC----CCCCCHHHHHHHHHHHhccCcccCCCccceEEEcC
Confidence 568999888643 5774 6666 7776665543 111111 1112345555555554 1335567 99999
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCC
Q 013204 103 SGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGET 181 (447)
Q Consensus 103 sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 181 (447)
||++|++.+++.+. .++++|++.+++||+.........|... ..++... .+. .
T Consensus 121 g~~~al~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~~g~~~------------~~~~~~~~~~~-----~- 174 (430)
T 2x5f_A 121 ALTHGLSLVGDLFV--------NQDDTILLPEHNWGNYKLVFNTRNGANL------------QTYPIFDKDGH-----Y- 174 (430)
T ss_dssp HHHHHHHHHHHHHC--------CTTCEEEEESSCCTHHHHHHTTTTCCEE------------EEECCBCTTSC-----B-
T ss_pred CchHHHHHHHHHHh--------CCCCEEEEcCCcCccHHHHHHHhcCCeE------------EEEeccCccCC-----c-
Confidence 99999999999763 2347899999999998655443022211 1111110 000 0
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHh-----cCCEEEEehhhcCCCccccc
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKK-----YDILFIADEVICAFGRLGTM 256 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~-----~g~~li~DEv~~g~g~~g~~ 256 (447)
+++++++.+....++..++++++| ++.+|. .++.+++++|.++|++ ||+++|+||+|+++.+.|..
T Consensus 175 -------d~~~l~~~l~~~~~~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~ 245 (430)
T 2x5f_A 175 -------TTDSLVEALQSYNKDKVIMILNYP-NNPTGY-TPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVY 245 (430)
T ss_dssp -------CSHHHHHHHHHCCSSEEEEEECSS-CTTTCC-CCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSC
T ss_pred -------CHHHHHHHHHhcCCCCEEEEEcCC-CCCCCC-cCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCccc
Confidence 127788887653323334455666 555564 5678999999999999 99999999999988666542
Q ss_pred c-cc--ccCCCCCC------eeeecccCCCcccceeEEEe---ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHH
Q 013204 257 F-GC--DKYSIKPD------LVSFAKALSSAYMPIGAILV---SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEA 324 (447)
Q Consensus 257 ~-~~--~~~~~~~d------~v~~sK~l~gg~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~ 324 (447)
+ .. ...+..++ +.++||.++.+++|+|++++ ++++++.+..... ...+..+++.++++++++.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~a~~~~ 322 (430)
T 2x5f_A 246 TQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVK---GLIRSNISSGPLPTQSAVKHV 322 (430)
T ss_dssp CSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHH---HHHHTTTSSCCHHHHHHHHHH
T ss_pred chHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHh---hhhhcccCCCChHHHHHHHHH
Confidence 1 11 22233344 33678999744489999999 9999888763210 011124677899999998888
Q ss_pred HH-H---Hhh-hcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH
Q 013204 325 LK-I---YKE-RNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK 397 (447)
Q Consensus 325 l~-~---~~~-~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 397 (447)
|+ . .+. ++..++++++.+++.+.|++. ...+ +....+. |.++.+.+. .. ....+.+.|++
T Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g-~~~~~~~~g~~~~~~~~-~~-----------~~~~~~~~l~~ 389 (430)
T 2x5f_A 323 LKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSH-WQAYDFNSGYFMAIKVH-DV-----------DPEALRKHLID 389 (430)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTT-EEECCCCBSSEEEEEES-SS-----------CHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-ceeeCCCceEEEEeCCC-CC-----------CHHHHHHHHHH
Confidence 87 3 221 225566666777777777632 1222 2223334 445677775 11 14468888887
Q ss_pred -cCceEEee-CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 398 -HGMLVRVS-GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 398 -~Gi~~~~~-g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+||++.++ .+.+|++++. .++++|++++++|+++++++
T Consensus 390 ~~gi~v~~g~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 390 KYSIGVIALNATDIRIAFSC-VEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp HHCEECEECSSSEEEEEGGG-SCGGGHHHHHHHHHHHHHHH
T ss_pred hCCEEEecCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHhc
Confidence 99999986 3679999875 59999999999999998764
No 86
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.95 E-value=3.6e-26 Score=224.87 Aligned_cols=342 Identities=13% Similarity=0.061 Sum_probs=219.0
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCC-eEEEeCChhhHHHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMA-KVFFTNSGSEANDTQ 111 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~v~~~~sGseA~~~A 111 (447)
.++||.++. ..++ .+|.+.+++.+++++....+....+..+....+++.+.+.+. +.+.+ ++++++||++|++.+
T Consensus 26 ~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~ 102 (411)
T 2o0r_A 26 GAVNLGQGF--PDED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAA 102 (411)
T ss_dssp TCEESSCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHH
T ss_pred CeeeccCcC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHH
Confidence 479998775 3566 689999999999876312222111223344445555544432 13456 899999999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC---cccCCCCCCChhHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH---YWRYAHPGETEEEYSTR 188 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 188 (447)
++.+. .++++|++.+++||+....... .|... ..++... .+. .
T Consensus 103 ~~~~~--------~~gd~Vl~~~~~y~~~~~~~~~-~g~~~------------~~v~~~~~~~~~~-------------~ 148 (411)
T 2o0r_A 103 VLGLV--------EPGSEVLLIEPFYDSYSPVVAM-AGAHR------------VTVPLVPDGRGFA-------------L 148 (411)
T ss_dssp HHHHC--------CTTCEEEEEESCCTTHHHHHHH-TTCEE------------EEEECEEETTEEE-------------C
T ss_pred HHHhc--------CCCCEEEEeCCCcHhHHHHHHH-cCCEE------------EEeeccccccCCC-------------C
Confidence 99763 2347899999999997654432 22211 1111110 000 0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc-cccccC----C
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM-FGCDKY----S 263 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~-~~~~~~----~ 263 (447)
++++|++.+. +++++|+++++++.+|.+ ++.+++++|.++|++||+++|+||+|+++.+.|.. .....+ +
T Consensus 149 d~~~l~~~l~----~~~~~v~l~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 223 (411)
T 2o0r_A 149 DADALRRAVT----PRTRALIINSPHNPTGAV-LSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAE 223 (411)
T ss_dssp CHHHHHHHCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGG
T ss_pred CHHHHHHhhc----cCceEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCC
Confidence 1367777664 356677777777777754 56889999999999999999999999988766532 122211 2
Q ss_pred CCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHHH
Q 013204 264 IKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKIA 341 (447)
Q Consensus 264 ~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~~ 341 (447)
....+.++||.++.+++|+|++++++++++.+... ....+++.++++++++.++|+... -++..++++++.
T Consensus 224 ~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 296 (411)
T 2o0r_A 224 RTITISSAAKMFNCTGWKIGWACGPAELIAGVRAA-------KQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARR 296 (411)
T ss_dssp GEEEEEEHHHHTTCTTTCEEEEECCHHHHHHHHHH-------HHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CEEEEeechhhcCCccceEEEEeeCHHHHHHHHHH-------HhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 22334468999984338999999999998877532 122345566777777777776431 134556777777
Q ss_pred HHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee---------------
Q 013204 342 PKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS--------------- 405 (447)
Q Consensus 342 ~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~--------------- 405 (447)
+++.+.|+++ +..+. ....|.++.+.+...... ....+.++|+ ++||++.++
T Consensus 297 ~~l~~~L~~~-g~~~~--~~~~g~~~~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~ 364 (411)
T 2o0r_A 297 DRLAAGLTEI-GFAVH--DSYGTYFLCADPRPLGYD---------DSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQA 364 (411)
T ss_dssp HHHHHHHHHH-TCEEC--CCCBSSEEEEECGGGTCC---------CHHHHHHHHHHHHSEECEEGGGGSCCC--------
T ss_pred HHHHHHHHHc-CCEec--CCCeeEEEEEecCCCCCC---------CHHHHHHHHHHhCCEEEcChhhhCCCccccccccc
Confidence 8888888765 22211 122355677777542100 1345777776 679998763
Q ss_pred ---CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 406 ---GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 406 ---g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.+.+|+++. .++++|++++++|++++++.+.
T Consensus 365 ~~~~~~iRis~~--~~~e~i~~~~~~l~~~~~~~~~ 398 (411)
T 2o0r_A 365 DVWNHLVRFTFC--KRDDTLDEAIRRLSVLAERPAT 398 (411)
T ss_dssp CCGGGCEEEECC--SCHHHHHHHHHHHGGGGC----
T ss_pred cCCCCeEEEEec--CCHHHHHHHHHHHHHHHhccCc
Confidence 135999964 5999999999999998876554
No 87
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.95 E-value=3.4e-26 Score=222.16 Aligned_cols=319 Identities=17% Similarity=0.143 Sum_probs=213.3
Q ss_pred HHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcC
Q 013204 56 AAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 135 (447)
Q Consensus 56 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~ 135 (447)
+++.+++......+ ++.....++.+.+++++...+++++++++||++|++.+++.+. .++++|++.++
T Consensus 46 ~~~~~~~~~~~~~y----~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~--------~~gd~Vl~~~~ 113 (375)
T 3op7_A 46 EDFYKKLQGTKLNY----GWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI--------EPGDHVISLYP 113 (375)
T ss_dssp HHHHHHHHTSCCSS----CCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEES
T ss_pred HHHHHHHhcCCcCC----CCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc--------CCCCEEEEeCC
Confidence 45555554433222 1333456888899988754567899999999999999999763 34578999999
Q ss_pred CCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccC
Q 013204 136 SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIG 215 (447)
Q Consensus 136 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~ 215 (447)
+|++........+.... .++.+....+ ..++++|++.+. +++++|+++++++
T Consensus 114 ~~~~~~~~~~~~g~~~~-------------~v~~~~~~~~-----------~~d~~~l~~~l~----~~~~~v~~~~~~n 165 (375)
T 3op7_A 114 TYQQLYDIPKSLGAEVD-------------LWQIEEENGW-----------LPDLEKLRQLIR----PTTKMICINNANN 165 (375)
T ss_dssp SCTHHHHHHHHTTCEEE-------------EEEEEGGGTT-----------EECHHHHHHHCC----TTCCEEEEESSCT
T ss_pred CchhHHHHHHHcCCEEE-------------EEeccccCCC-----------CCCHHHHHHhhc----cCCeEEEEcCCCC
Confidence 99997655443222111 1111000000 001367777664 3566778888877
Q ss_pred CCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcccceeEEEeChhHHHHh
Q 013204 216 AGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVI 295 (447)
Q Consensus 216 ~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~ 295 (447)
.+|. ..+.+++++|.++|++||+++|+||+|+++++.+.....+.++..+++.++||.++.+++++|++++++++++.+
T Consensus 166 ptG~-~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~ 244 (375)
T 3op7_A 166 PTGA-VMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDIL 244 (375)
T ss_dssp TTCC-CCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHH
Confidence 7775 457888999999999999999999999988665333333445555667789999984448999999999999988
Q ss_pred hhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeee-eEEEEEee
Q 013204 296 HSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTG-LILGTEFA 372 (447)
Q Consensus 296 ~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g-~~~~i~~~ 372 (447)
.. .....+++.++++++++.++++..+. ++..+.++++.+.+++.|++. +.+..+...+ .+..+.+.
T Consensus 245 ~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~ 314 (375)
T 3op7_A 245 RD-------YRDYTMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEE---PLVSYIRPAVVSTSFVKIA 314 (375)
T ss_dssp TT-------TGGGTTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHC---TTEEECCCSSSSCEEEEEC
T ss_pred HH-------HHhhhccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhC---CCceEecCCCeEEEeEEcC
Confidence 63 23445677788988888888874321 233444556666666666653 3333333333 34445554
Q ss_pred cCCCCCCCCCCCcchHHHHHHHH-HHcCceEEeeC-----CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 373 DNKSPNEPFPPEWGIGAYFGAQC-EKHGMLVRVSG-----DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~g-----~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
... ....+.+.+ .++||.+.++. +.+|++ +..++++|++++++|+++++++++
T Consensus 315 ~~~-----------~~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~--~~~~~~~i~~~l~~l~~~l~~~~~ 373 (375)
T 3op7_A 315 VDM-----------PMEDFCLQLLQEHGVLLVPGNRFERDGYVRLG--FACEQETLIKGLEKLSQFLRRFDK 373 (375)
T ss_dssp CSS-----------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEC--CCSCHHHHHHHHHHHHHHHGGGC-
T ss_pred CCC-----------CHHHHHHHHHHhCCEEEeChhhhCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHHHhh
Confidence 321 134566776 58899998763 679999 566779999999999999876543
No 88
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.95 E-value=2e-26 Score=229.40 Aligned_cols=346 Identities=10% Similarity=0.036 Sum_probs=220.9
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccC-cCCChHHHHHHHHHHHhcC---cCCCCeEEEeCChh
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFW-NRTTKPSLDLAKELLEMFT---ASKMAKVFFTNSGS 105 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~v~~~~sGs 105 (447)
.+|++++||.++. ..+. .+|+|.+++.+++.+........ ..+.....++.+.+++++. +...++++|++|++
T Consensus 66 ~~~~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~ 142 (449)
T 3qgu_A 66 NPDAKIISLGIGD--TTEP-LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSK 142 (449)
T ss_dssp CTTCCCEECSSCC--CCCC-CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCEEEeeCCC--CCCC-CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHH
Confidence 4688999998874 4444 68999999999987532111111 1122345677777777752 34667999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHH
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEY 185 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (447)
+++..+ ..+. .+++.|++.+++|++........+........ ....+..+++.+...+.
T Consensus 143 ~al~~~-~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~---~~~~~~~~~~~~~~~~~--------- 201 (449)
T 3qgu_A 143 CDIARI-QMMF--------GSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGT---GFDGIEYMVCNPDNHFF--------- 201 (449)
T ss_dssp HHHHHH-HHHH--------CSSSCEEEEESCCTHHHHHHHHHTCSCCBCSS---SBTTEEEEECCGGGTTC---------
T ss_pred HHHHHH-HHHh--------CCCCEEEEcCCCChhHHHHHHHcCCccccccc---ccceeEEEecccccCCc---------
Confidence 999988 4332 34578999999999987655543322100000 00011222221110000
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc-ccccccCC-
Q 013204 186 STRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT-MFGCDKYS- 263 (447)
Q Consensus 186 ~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~-~~~~~~~~- 263 (447)
.++++ . + ++++|+++..++.+|. .++.+.+++|+++|++||+++|+||+|++|++.|. ...+..+.
T Consensus 202 -----~~~~~----~-~-~~~~v~l~~p~NPtG~-~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~ 269 (449)
T 3qgu_A 202 -----PDLSK----A-K-RTDIIFFCSPNNPTGA-AATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPG 269 (449)
T ss_dssp -----CCGGG----C-C-CCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTT
T ss_pred -----CChhH----c-C-CCCEEEEeCCCCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccC
Confidence 11111 1 2 3445555555666664 55788999999999999999999999998877653 22222221
Q ss_pred ---CCCCeeeecccCCCcccceeEEEeChhHHH--------HhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh---
Q 013204 264 ---IKPDLVSFAKALSSAYMPIGAILVSPEVSE--------VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--- 329 (447)
Q Consensus 264 ---~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--- 329 (447)
....+.++||.++.+++|+|++++++++++ .+.. .....+++.+++++.++.++++...
T Consensus 270 ~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 342 (449)
T 3qgu_A 270 ADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNR-------VMTTCFNGASNIVQAGGLACLQPEGLKE 342 (449)
T ss_dssp GGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHH-------HHHHSCCCCCHHHHHHHHHHTSHHHHHH
T ss_pred CCCcEEEEecchhhcCCccceeEEEecCHHHHhhhhhhHHHHHHH-------HhhcccCCCCHHHHHHHHHHHhhcCHHH
Confidence 223355799999833389999999988765 2221 1122345678899998888876421
Q ss_pred hhcHHHHHHHHHHHHHHhHhhccCCCceeeEee-eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee--
Q 013204 330 ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG-TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS-- 405 (447)
Q Consensus 330 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-- 405 (447)
.++..++++++.+++++.|+++ +..+ ..+ .|.++.+.+. .. ....+.+.|+++ ||++.++
T Consensus 343 ~~~~~~~~~~~~~~l~~~L~~~-g~~~---~~~~~~~~~~~~~~-~~-----------~~~~~~~~l~~~~gI~v~pg~~ 406 (449)
T 3qgu_A 343 MNAMIKFYKENAQILKTTFTEM-GFSV---YGGDDAPYIWVGFP-GK-----------PSWDVFAEILERCNIVTTPGSG 406 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCE---EESSSSSEEEEECT-TS-----------CHHHHHHHHHHHHCEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCee---eCCCCeeEEEEECC-CC-----------CHHHHHHHHHHHCCEEEecchH
Confidence 2456677788888888888776 2222 223 3566667665 11 144577777775 9999875
Q ss_pred -----CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 406 -----GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 406 -----g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+.+||+ +..++++|++++++|++++++-
T Consensus 407 f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~~~ 440 (449)
T 3qgu_A 407 YGPAGEGFVRAS--AFGSRENILEAVRRFKEAYGKR 440 (449)
T ss_dssp GCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHC--
T ss_pred hCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHhc
Confidence 2679999 6779999999999999988653
No 89
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.95 E-value=1.3e-25 Score=218.85 Aligned_cols=336 Identities=11% Similarity=0.031 Sum_probs=216.9
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCC-eEEEeCChhhHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMA-KVFFTNSGSEANDT 110 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~v~~~~sGseA~~~ 110 (447)
..++||.++.. .++ .+|.+.+++.+++++....+....+..+....+++.+.+.+. +.+.+ ++++++||++|++.
T Consensus 30 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~ 106 (386)
T 1u08_A 30 HQAINLSQGFP--DFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 106 (386)
T ss_dssp TTCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CCeEEecCCCC--CCC-CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHH
Confidence 35899987753 466 689999999999875222222111233344444555444333 23566 89999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 189 (447)
+++.+. .++++|++.++.||+........ |... ..++... .+. . +
T Consensus 107 ~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~-g~~~------------~~v~~~~~~~~-----~--------d 152 (386)
T 1u08_A 107 AITALV--------RNGDEVICFDPSYDSYAPAIALS-GGIV------------KRMALQPPHFR-----V--------D 152 (386)
T ss_dssp HHHHHC--------CTTCEEEEEESCCTTHHHHHHHT-TCEE------------EEEECCTTTCC-----C--------C
T ss_pred HHHHhC--------CCCCEEEEeCCCchhHHHHHHHc-CCEE------------EEeecCcccCc-----C--------C
Confidence 999763 23478999999999876544332 2211 1111110 000 0 1
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-cc-c---cCCC
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GC-D---KYSI 264 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~-~---~~~~ 264 (447)
+++|++.+. +++++|++++.++.+|.+ .+.+.+++|.++|++||+++|+||+|+++.+.|... .+ . ..+.
T Consensus 153 ~~~l~~~l~----~~~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 227 (386)
T 1u08_A 153 WQEFAALLS----ERTRLVILNTPHNPSATV-WQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRER 227 (386)
T ss_dssp HHHHHHHCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTT
T ss_pred HHHHHHhhc----ccCEEEEEeCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCc
Confidence 366777663 356677777667677754 567899999999999999999999999886655421 11 1 1233
Q ss_pred CCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcHHHHHHHHHH
Q 013204 265 KPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNIVEQVNKIAP 342 (447)
Q Consensus 265 ~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~~~~~~~~~~ 342 (447)
...+.++||.++.+++|+|++++++++++.+... ....+++.++++++++.++|+... -++..++++++.+
T Consensus 228 ~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 300 (386)
T 1u08_A 228 AVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKV-------HQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRD 300 (386)
T ss_dssp EEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHH-------HHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHH
T ss_pred EEEEecchhhcCCcccceEEEEcCHHHHHHHHHH-------HHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 3345578999984338999999999998887632 222356778888888888887431 1345566667777
Q ss_pred HHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEEee---------CCEEEEe
Q 013204 343 KFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS---------GDNIMMS 412 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~---------g~~iR~~ 412 (447)
++.+.|+++ ++.......|.++.+.+...... ....+.+.|+ ++||++.++ .+.+|++
T Consensus 301 ~l~~~L~~~---g~~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis 368 (386)
T 1u08_A 301 ILVNALNES---RLEILPCEGTYFLLVDYSAVSTL---------DDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLC 368 (386)
T ss_dssp HHHHHTTSS---SCEECCCCBSSEEEEECTTTCCS---------CHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEE
T ss_pred HHHHHHHHC---CCeecCCCceEEEEEecCCCCCC---------CHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEE
Confidence 777777654 22111122255677776532100 1345777776 689999864 2469999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 013204 413 PPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 413 ~~~~~t~e~i~~~~~~l~~ 431 (447)
++ .++++|++++++|++
T Consensus 369 ~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 369 FA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp CC--SCHHHHHHHHHHHTT
T ss_pred Ec--CCHHHHHHHHHHHhh
Confidence 65 599999999999864
No 90
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.95 E-value=2.4e-26 Score=227.79 Aligned_cols=357 Identities=11% Similarity=0.038 Sum_probs=222.8
Q ss_pred EeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc------cc--cCcCCChHHHHHHHHHHHhcC-------c
Q 013204 28 YDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY------HS--FWNRTTKPSLDLAKELLEMFT-------A 92 (447)
Q Consensus 28 ~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~------~~--~~~~~~~~~~~l~~~l~~~~~-------~ 92 (447)
||.++|.+.++..+...++++ ++.+.+++.+........ .. ....+.....++++.+++++. +
T Consensus 31 y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~ 108 (435)
T 3piu_A 31 YHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVT 108 (435)
T ss_dssp CBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSC
T ss_pred CCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCC
Confidence 778888777766676666666 678887777655422100 00 001122223556666666552 1
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc
Q 013204 93 SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY 172 (447)
Q Consensus 93 ~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
.+.+++++++||++|++.+++.++ ..++.|++.+++|++.........|.... .+++...
T Consensus 109 ~~~~~v~~~~gg~~a~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~~g~~~~------------~~~~~~~ 168 (435)
T 3piu_A 109 FDPNHLVLTAGATSANETFIFCLA--------DPGEAVLIPTPYYPGFDRDLKWRTGVEIV------------PIHCTSS 168 (435)
T ss_dssp CCGGGEEEEEHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHTTTTTCCEEE------------EEECCGG
T ss_pred CCHHHEEEcCChHHHHHHHHHHhc--------CCCCeEEECCCccccHHHHHHHhcCCEEE------------EeeCCCc
Confidence 357899999999999999999874 33478999999998876544322332211 1111110
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC
Q 013204 173 WRYAHPGETEEEYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250 (447)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~ 250 (447)
..+. . ++++|++.+... ...++++|++++.++.+|. +++.+.+++|+++|++||+++|+||+|+++
T Consensus 169 ~~~~---~--------d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~ 236 (435)
T 3piu_A 169 NGFQ---I--------TETALEEAYQEAEKRNLRVKGVLVTNPSNPLGT-TMTRNELYLLLSFVEDKGIHLISDEIYSGT 236 (435)
T ss_dssp GTSC---C--------CHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGG
T ss_pred cCCc---C--------CHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEecccccc
Confidence 0000 0 137777777542 1235677777766666665 556788999999999999999999999987
Q ss_pred Cccccccc-cccC----CCC-----CC----eeeecccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcCCCCCCcH
Q 013204 251 GRLGTMFG-CDKY----SIK-----PD----LVSFAKALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHGFTYSGHP 315 (447)
Q Consensus 251 g~~g~~~~-~~~~----~~~-----~d----~v~~sK~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 315 (447)
++.|..+. .... ++. +| +.++||+++.+++|+|++++ ++++.+.+... ..++..++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~---------~~~~~~~~ 307 (435)
T 3piu_A 237 AFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM---------SSFGLVSS 307 (435)
T ss_dssp CCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHH---------GGGSCCCH
T ss_pred ccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHH---------hhcCCCCH
Confidence 66665332 1111 111 33 44789999833389999999 56677766532 12344567
Q ss_pred HHHHHHHHHHHHHh-----hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHH
Q 013204 316 VSCAVAIEALKIYK-----ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGA 389 (447)
Q Consensus 316 ~~~~aa~a~l~~~~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~ 389 (447)
++++++.++++..+ -++..++++++.+++++.|+++ ++ ....+.+ .++.+.+........ .....
T Consensus 308 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g~-~~~~~~~g~~~~~~l~~~~~~~~-----~~~~~ 378 (435)
T 3piu_A 308 QTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS---GI-SCLNGNAGLFCWVDMRHLLRSNT-----FEAEM 378 (435)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TC-EECCCCSSSEEEEECGGGSSSSS-----HHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-cccCCCeeEEEEEEcccccccCC-----chhHH
Confidence 77777777665322 1234455666666777777654 22 2233444 677787765321100 00134
Q ss_pred HHHHHHHHc-CceEEee-------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 390 YFGAQCEKH-GMLVRVS-------GDNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 390 ~~~~~l~~~-Gi~~~~~-------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
.+.++|+++ ||++.++ .+.+||+++.. ++++|++++++|++++++++
T Consensus 379 ~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 379 ELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANL-PERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp HHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHHh
Confidence 577888777 9999874 25799997654 99999999999999987754
No 91
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.95 E-value=8.1e-26 Score=223.07 Aligned_cols=362 Identities=13% Similarity=0.058 Sum_probs=223.2
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC--cccccCcCCChHHHHHHHHHHHhcCc-CCC-CeEEEeCChhhH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP--FYHSFWNRTTKPSLDLAKELLEMFTA-SKM-AKVFFTNSGSEA 107 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~-~~v~~~~sGseA 107 (447)
+..++||..+. ..++ .+|.+.+++.+++.+.. ..+....+..+....+++.+.+.+.. ..+ +++++++||++|
T Consensus 27 ~~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a 103 (422)
T 3fvs_A 27 EHDVVNLGQGF--PDFP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA 103 (422)
T ss_dssp TSCCEECCCSS--CSSC-CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHH
T ss_pred cCCceEeCCCC--CCCC-CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHH
Confidence 45789998775 3444 68999999999987632 11211112334445555555554321 234 589999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
++.+++.+. .++++|++.+++||++.......+...... ............+..+.+.
T Consensus 104 ~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~~G~~~~~~~~~------------- 161 (422)
T 3fvs_A 104 LFTAFQALV--------DEGDEVIIIEPFFDCYEPMTMMAGGRPVFV-SLKPGPIQNGELGSSSNWQ------------- 161 (422)
T ss_dssp HHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEEEEE-ECBCCCCCSSSCCBGGGSB-------------
T ss_pred HHHHHHHHc--------CCCCEEEEcCCCchhhHHHHHHcCCEEEEE-ecccccccccccccccCCC-------------
Confidence 999999763 345789999999999865544432211110 0000000000000000000
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-ccccCC---
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDKYS--- 263 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~~~--- 263 (447)
.+++++++.+. +++++|++++.++.+|.+ .+.+.+++|+++|++||+++|+||+|+++.+.|... .+..+.
T Consensus 162 ~d~~~l~~~~~----~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 236 (422)
T 3fvs_A 162 LDPMELAGKFT----SRTKALVLNTPNNPLGKV-FSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMW 236 (422)
T ss_dssp CCHHHHHTTCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTG
T ss_pred CCHHHHHhhcC----CCceEEEECCCCCCCCcC-CCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhccccc
Confidence 01366665553 356677777777777755 478899999999999999999999999887766422 222222
Q ss_pred -CCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH-------h--hhcH
Q 013204 264 -IKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY-------K--ERNI 333 (447)
Q Consensus 264 -~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~-------~--~~~~ 333 (447)
...++.++||.++.+++|+|++++++++++.+.. ..+..+++.++++++++.++++.. . -++.
T Consensus 237 ~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 309 (422)
T 3fvs_A 237 ERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRT-------VHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQF 309 (422)
T ss_dssp GGEEEEEEHHHHHTCGGGCCEEEECCHHHHHHHHH-------HHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHH
T ss_pred CcEEEEecchhccCCccceEEEEEeCHHHHHHHHH-------HHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHH
Confidence 1133446899997434899999999999888753 233457778899999888888741 1 1234
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCC--CCCCCCCCCcchHHHHHHHHH-HcCceEEee-----
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNK--SPNEPFPPEWGIGAYFGAQCE-KHGMLVRVS----- 405 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~----- 405 (447)
.++++++.+++.+.|+++ ++.......|.++.+++.... ...............+...++ ++||++.++
T Consensus 310 ~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~ 386 (422)
T 3fvs_A 310 PQAMQRCRDHMIRSLQSV---GLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYS 386 (422)
T ss_dssp HHHHHHHHHHHHHHHHTT---TCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSC
T ss_pred HHHHHHHHHHHHHHHHHc---CCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcC
Confidence 556666667777777664 332223345666677665311 000000000011334666654 579998873
Q ss_pred -------CCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 406 -------GDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 406 -------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+.+|++ +..++++|++++++|++++++
T Consensus 387 ~~~~~~~~~~iRis--~~~~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 387 VPHQKHFDHYIRFC--FVKDEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp HHHHTTSCSEEEEE--CCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHhh
Confidence 2569999 556999999999999998764
No 92
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.95 E-value=1.7e-25 Score=215.24 Aligned_cols=329 Identities=10% Similarity=0.028 Sum_probs=207.6
Q ss_pred EEEecCcEEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeE
Q 013204 19 IEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKV 98 (447)
Q Consensus 19 ~~~~~g~~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v 98 (447)
+.+++|.++++.+|++++||+++. ++++ .+|++.+++.+++.....+ +.....++.+++++++ +.+++++
T Consensus 1 ~~~~~g~~~~~~~g~~~id~~~~~--~~~~-~~~~v~~a~~~~~~~~~~y------~~~~~~~lr~~la~~~-~~~~~~i 70 (350)
T 3fkd_A 1 MIFGHGDEGITPLSSEIVNFSTTV--WTDG-DKDHLEKHLVENLNCIRHY------PEPDAGTLRQMLAKRN-SVDNNAI 70 (350)
T ss_dssp ---------------CCEECSCCS--CCCS-CCHHHHHHHHHTGGGGGSC------CCTTCHHHHHHHHHHT-TCCGGGE
T ss_pred CcccccchHhhhccccEEEccCCC--CCCC-CCHHHHHHHHHhHhHHhcC------CCCcHHHHHHHHHHHh-CcCHHHE
Confidence 356889999999999999998875 5566 7899999999887432211 2222367888998887 3566799
Q ss_pred EEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC-CCcccCCC
Q 013204 99 FFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC-PHYWRYAH 177 (447)
Q Consensus 99 ~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 177 (447)
++++||++|+..+++.+. +++|++.+++|++........+... ..++. ++.
T Consensus 71 ~~t~g~~~al~~~~~~l~----------gd~Vi~~~p~~~~~~~~~~~~g~~~-------------~~v~~~~~~----- 122 (350)
T 3fkd_A 71 LVTNGPTAAFYQIAQAFR----------GSRSLIAIPSFAEYEDACRMYEHEV-------------CFYPSNEDI----- 122 (350)
T ss_dssp EEESHHHHHHHHHHHHTT----------TCEEEEEESCCHHHHHHHHHTTCEE-------------EEEETTSCG-----
T ss_pred EEcCCHHHHHHHHHHHHC----------CCEEEEeCCCcHHHHHHHHHcCCeE-------------EEEecCCcc-----
Confidence 999999999999999762 4789999999998865544432211 11121 110
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc
Q 013204 178 PGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF 257 (447)
Q Consensus 178 ~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~ 257 (447)
+.+. .+++++|+++..++.+|.+. +.+.+.+|++.|+++ ++|+||+|++++..+...
T Consensus 123 -------------~~~~-------~~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~ 179 (350)
T 3fkd_A 123 -------------GEAD-------FSNMDFCWLCNPNNPDGRLL-QRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIR 179 (350)
T ss_dssp -------------GGSC-------CTTCSEEEEESSCTTTCCCC-CHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCC
T ss_pred -------------ccCc-------cCCCCEEEEeCCCCCcCCCC-CHHHHHHHHHhCCCC--EEEEECchhhhccCcchh
Confidence 0000 02344555555566666555 445555555555544 999999999887665432
Q ss_pred c--cccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh--hhcH
Q 013204 258 G--CDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--ERNI 333 (447)
Q Consensus 258 ~--~~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--~~~~ 333 (447)
. ....+....+.++||.++.+++++|++++++++++.+... ..+++.+++++.++.++|+... .+..
T Consensus 180 ~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (350)
T 3fkd_A 180 PADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAF---------STPWAVNALAIEAAKFILIHPAQFTLPI 250 (350)
T ss_dssp GGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTT---------CCTTCSCHHHHHHHHHHHHCTTTTCCCH
T ss_pred hHHhhcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHh---------CCCCCCCHHHHHHHHHHHhCHHHHHHHH
Confidence 2 1111111223368999884338999999999999988732 1356778999998888887433 1233
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEee-------
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVS------- 405 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~------- 405 (447)
.+. .++.+++.+.|+++ +.+...++.|.++.+.+.... ...+.+.|++ +||.+.++
T Consensus 251 ~~~-~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~------------~~~l~~~L~~~~gi~v~~g~~f~~~~ 314 (350)
T 3fkd_A 251 RKW-QRNTVDFITALNRL---DGVEVHPSGTTFFLLRLKKGT------------AAELKKYMLEEYNMLIRDASNFRGLD 314 (350)
T ss_dssp HHH-HHHHHHHHHHHHHS---TTEEECCCSSSEEEEEESSSC------------HHHHHHHHHHTTCEECEECTTSTTCC
T ss_pred HHH-HHHHHHHHHHHhcC---CCcEECCCCCcEEEEECCCCC------------HHHHHHHHHHHCCEEEEeCccCCCCC
Confidence 333 36677777777765 333334566777777765421 4568888998 99999876
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 406 GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 406 g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+.+|+++ .+++++++++++|++.+++.
T Consensus 315 ~~~iRis~---~~~~~~~~l~~al~~~~~~~ 342 (350)
T 3fkd_A 315 ESYVRITT---QRPAQNQLFIKALETFLEKY 342 (350)
T ss_dssp TTEEEEEC---CCHHHHHHHHHHHHHHHTC-
T ss_pred CCEEEEEc---CCHHHHHHHHHHHHHHHHHh
Confidence 25799994 38899999999998887653
No 93
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.94 E-value=5.9e-25 Score=215.46 Aligned_cols=330 Identities=12% Similarity=0.058 Sum_probs=215.7
Q ss_pred CCCCHHHHHHHHHHHhcCCcc-cc----cCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhc
Q 013204 48 GGSEPRLVAAATAQLNTLPFY-HS----FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL 122 (447)
Q Consensus 48 G~~~p~v~~a~~~~~~~~~~~-~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~ 122 (447)
|+.+|++.+++.+++.+.... +. ....+.+...++++++++++...+.++++|++||++|++.+++.++.++
T Consensus 33 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~--- 109 (406)
T 1kmj_A 33 AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSN--- 109 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHH---
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhc---
Confidence 468899999999998764211 10 0001345677899999998742146799999999999999999874221
Q ss_pred CCCCcceEEEEcCCCccchhhh---hcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHh
Q 013204 123 GRPNKKKFIARQKSYHGSTLIA---ASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILK 199 (447)
Q Consensus 123 ~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~ 199 (447)
. .++++|++.+++||+..... ....|... ..++.+..+. . ++++|++.+.
T Consensus 110 ~-~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~------------~~~~~~~~~~-----~--------d~~~l~~~l~- 162 (406)
T 1kmj_A 110 V-RAGDNIIISQMEHHANIVPWQMLCARVGAEL------------RVIPLNPDGT-----L--------QLETLPTLFD- 162 (406)
T ss_dssp C-CTTCEEEEETTCCGGGTHHHHHHHHHHTCEE------------EEECBCTTSC-----B--------CGGGHHHHCC-
T ss_pred C-CCCCEEEEecccchHHHHHHHHHHHhCCCEE------------EEEecCCCCC-----c--------CHHHHHHHhc-
Confidence 1 23478999999999875321 11122211 1111111100 0 0266776664
Q ss_pred hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCC
Q 013204 200 EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSS 277 (447)
Q Consensus 200 ~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~g 277 (447)
+++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|.. .+... ...+|+++ ++|.++.
T Consensus 163 ---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~-~g~~--~~~~~--~~~~d~~~~s~~K~~g~ 230 (406)
T 1kmj_A 163 ---EKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQA-VMHH--PVDVQ--ALDCDFYVFSGHKLYGP 230 (406)
T ss_dssp ---TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS--CCCHH--HHTCSEEEEEGGGTTSC
T ss_pred ---cCCeEEEEeCCCccccCcCC----HHHHHHHHHHcCCEEEEEchhh-cCCC--CCccc--ccCCCEEEEEchhccCC
Confidence 35788999999888888776 9999999999999999999997 3332 11111 23478764 7898843
Q ss_pred cccceeEEEeChhHHHHhhhccCCCCc--------------cCcCCCCCCcHHHHHHHH-HHHHHHhh---hcHHHHHHH
Q 013204 278 AYMPIGAILVSPEVSEVIHSQSNTLGS--------------FSHGFTYSGHPVSCAVAI-EALKIYKE---RNIVEQVNK 339 (447)
Q Consensus 278 g~~~~g~~~~~~~~~~~~~~~~~~~~~--------------~~~~~t~~~~~~~~~aa~-a~l~~~~~---~~~~~~~~~ 339 (447)
.++|++++++++++.+......... .....+.+.+++.+.+++ ++++.+.+ +++.+++++
T Consensus 231 --~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 308 (406)
T 1kmj_A 231 --TGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQN 308 (406)
T ss_dssp --TTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred --CCcEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3489999999998887532100000 000011223445544444 67777654 345677777
Q ss_pred HHHHHHHhHhhccCCCceeeEee--eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----------
Q 013204 340 IAPKFQDGVKAFSDSPIIGEIRG--TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG----------- 406 (447)
Q Consensus 340 ~~~~l~~~L~~l~~~~~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g----------- 406 (447)
+.+++.+.|++++ .+..... .|.++.+.+... ....+.+.|.++||.+.++.
T Consensus 309 ~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g 373 (406)
T 1kmj_A 309 LMHYALSQLESVP---DLTLYGPQNRLGVIAFNLGKH------------HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYN 373 (406)
T ss_dssp HHHHHHHHHTTST---TEEEESCTTCCSEEEEEETTC------------CHHHHHHHHHHTTEECEEECTTCHHHHHHTT
T ss_pred HHHHHHHHHhcCC---CeEEecCCCcCCEEEEEECCC------------CHHHHHHHHhhCCcEEEeccccchHHHHhcC
Confidence 8888888887653 2222333 577777765321 13457788999999988652
Q ss_pred --CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 407 --DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 407 --~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+.+|++++..+|++++++++++|+++++.+
T Consensus 374 ~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 374 VPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp CSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 579999999899999999999999988754
No 94
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.94 E-value=4.6e-26 Score=224.15 Aligned_cols=346 Identities=10% Similarity=0.041 Sum_probs=216.3
Q ss_pred CCCEEEecCCccccccCCC--CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC-----CCCeEEE--e
Q 013204 31 NGKKYLDSLAGLWCTALGG--SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS-----KMAKVFF--T 101 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~v~~--~ 101 (447)
+|+.++||..+....+.|+ .+|.+.+++.+.+.+....+. ..+.....++.+.+++++... ..+++++ +
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~--y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t 105 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHE--YLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQS 105 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCC--CCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccC--CCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEEC
Confidence 4778999988864344444 458999999888732111111 112333466777777776321 4578999 9
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCCc-----ceEEEEcCCCccchhhhhcccCC-ccccCCCCCCCCcceecCCC--Ccc
Q 013204 102 NSGSEANDTQVKLVWYYNNALGRPNK-----KKFIARQKSYHGSTLIAASLSGL-PALHQKFDLPAPFVLHTDCP--HYW 173 (447)
Q Consensus 102 ~sGseA~~~Al~~~~~~~~~~~~~~~-----~~vi~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~ 173 (447)
+||++|++.+++++... .++ ++|++.+++||++.......+.. .. .++.. +.+
T Consensus 106 ~gg~~a~~~~~~~~~~~------~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~-------------~~~~~~~~~~ 166 (412)
T 1ajs_A 106 LGGTGALRIGAEFLARW------YNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIR-------------SYRYWDTEKR 166 (412)
T ss_dssp EHHHHHHHHHHHHHHHH------SSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEE-------------EEECEETTTT
T ss_pred CCcHHHHHHHHHHHHHh------CcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeE-------------EEeeecCCCC
Confidence 99999999998865433 223 68999999999987655443322 11 11110 000
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
. .+++++++.+....++...+++.+|.|++ | ..++.+++++|.++|++||+++|+||+|+++++.
T Consensus 167 ~-------------~d~~~l~~~l~~~~~~~~~v~~~~p~npt-G-~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~ 231 (412)
T 1ajs_A 167 G-------------LDLQGFLSDLENAPEFSIFVLHACAHNPT-G-TDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASG 231 (412)
T ss_dssp E-------------ECHHHHHHHHHHSCTTCEEEEESSSCTTT-C-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTS
T ss_pred c-------------cCHHHHHHHHHhCCCCcEEEEECCCCCCC-C-CCCCHHHHHHHHHHHHHCCCEEEEEcccccccCC
Confidence 0 01477888776543333433345555555 4 4568899999999999999999999999999876
Q ss_pred c---cccccccCCCCCC----eeeecccCCCcccceeEEEe---ChhHHHHhhhccCCCCccCcCCCCC-CcHHHHHHHH
Q 013204 254 G---TMFGCDKYSIKPD----LVSFAKALSSAYMPIGAILV---SPEVSEVIHSQSNTLGSFSHGFTYS-GHPVSCAVAI 322 (447)
Q Consensus 254 g---~~~~~~~~~~~~d----~v~~sK~l~gg~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~t~~-~~~~~~~aa~ 322 (447)
| ....+..+...+| +.++||.++..++|+|++++ ++++++.+...- .. .+..++. .++++++++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~a~~ 307 (412)
T 1ajs_A 232 NLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQM---QK-IVRVTWSNPPAQGARIVA 307 (412)
T ss_dssp CHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHH---HH-HHHTTTSSCCSHHHHHHH
T ss_pred cccccchHHHHHhccCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHH---HH-HHhcccCCCChHHHHHHH
Confidence 5 3223322211233 34789999883389999999 887443322100 01 0113444 5888888888
Q ss_pred HHHHHHh--------hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHH
Q 013204 323 EALKIYK--------ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGA 393 (447)
Q Consensus 323 a~l~~~~--------~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 393 (447)
++|+... -++..++++++++++.+.|+++.....+....+. |.+..+.+. ...+..
T Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 372 (412)
T 1ajs_A 308 RTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN---------------PKQVEY 372 (412)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC---------------HHHHHH
T ss_pred HHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC---------------HHHHHH
Confidence 8887431 2445677788888888888776200011111222 333332221 223455
Q ss_pred HHHHcCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 394 QCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 394 ~l~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+.++||++.++ +|+++.. .+++++++++++|++++++
T Consensus 373 ~l~~~gv~v~~~---~Ris~~~-~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 373 LINQKHIYLLPS---GRINMCG-LTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp HHHTTCEECCTT---SEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred HHHhCCEEecCC---cEEEeee-CCHHHHHHHHHHHHHHHHh
Confidence 566889998864 6999663 5999999999999998865
No 95
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.94 E-value=3e-25 Score=214.71 Aligned_cols=324 Identities=12% Similarity=0.147 Sum_probs=219.5
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
++.++||.++. ++++ .+|++++++.+++.....+ +.....++.+++++++. .+.+++++++||++|++.+
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y------~~~~~~~lr~~la~~~~-~~~~~v~~~~g~~~a~~~~ 98 (365)
T 3get_A 29 VKEVIKLASNE--NPFG-TPPKAIECLRQNANKAHLY------PDDSMIELKSTLAQKYK-VQNENIIIGAGSDQVIEFA 98 (365)
T ss_dssp CSCCEECSSCC--CTTC-SCHHHHHHHHHHGGGTTSC------CCTTCHHHHHHHHHHHT-CCGGGEEEESSHHHHHHHH
T ss_pred CCceEEecCCC--CCCC-CCHHHHHHHHHHHHhhccC------CCCChHHHHHHHHHHhC-CCcceEEECCCHHHHHHHH
Confidence 37899998775 5566 7899999999998753222 12222578888888873 4577999999999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
++.+. .++++|++.+++|++........+... ..++.++ +.+ .+++
T Consensus 99 ~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~-------------~~v~~~~-----------~~~--~d~~ 144 (365)
T 3get_A 99 IHSKL--------NSKNAFLQAGVTFAMYEIYAKQCGAKC-------------YKTQSIT-----------HNL--DEFK 144 (365)
T ss_dssp HHHHC--------CTTCEEEECSSCCTHHHHHHHHHTCEE-------------EECSSSS-----------CCH--HHHH
T ss_pred HHHHh--------CCCCEEEEeCCChHHHHHHHHHcCCEE-------------EEEecCC-----------CCC--CCHH
Confidence 99763 335789999999988765444322211 1111100 112 3457
Q ss_pred HHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc--ccc-cc-cccc---CCC
Q 013204 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR--LGT-MF-GCDK---YSI 264 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~--~g~-~~-~~~~---~~~ 264 (447)
++++.+. +++++|+++..++.+|.+. +.+.+.+|+++| ++|+++|+||+|+++.. .+. .. .... .+.
T Consensus 145 ~l~~~l~----~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (365)
T 3get_A 145 KLYETHK----DEIKLIFLCLPNNPLGECL-DASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDN 218 (365)
T ss_dssp HHHHHTT----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTT
T ss_pred HHHHHhC----CCCCEEEEcCCCCCCCCCc-CHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCC
Confidence 7777765 3566666665555566544 566677777777 57999999999997642 221 11 1111 222
Q ss_pred CCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHH
Q 013204 265 KPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPK 343 (447)
Q Consensus 265 ~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~ 343 (447)
...+.++||.++.+++++|++++++++++.+... ..+++.++++++++.++++..+ -++..++++++.++
T Consensus 219 ~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 289 (365)
T 3get_A 219 VLYLGTFSKLYGLGGLRIGYGIANANIISAFYKL---------RAPFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMEL 289 (365)
T ss_dssp EEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHH---------SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecchHhcCcchheEEEEcCHHHHHHHHHh---------cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 2223368999874448999999999999888642 1245678899888888886321 13345666667777
Q ss_pred HHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC----CEEEEecCCCCCH
Q 013204 344 FQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG----DNIMMSPPFIMSP 419 (447)
Q Consensus 344 l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g----~~iR~~~~~~~t~ 419 (447)
+++.|+++ + +....+.|.++.+.+.... ...+.+.|.++||.+.++. +.+|+++. ++
T Consensus 290 l~~~l~~~---g-~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~ 350 (365)
T 3get_A 290 YKEFAKKH---N-IKIIDSYTNFITYFFDEKN------------STDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TS 350 (365)
T ss_dssp HHHHHHHT---T-CEECCCSSSEEEEECSSSC------------HHHHHHHHHTTTEECEECGGGTCSEEEEECC---CH
T ss_pred HHHHHHhC---C-CEECCCCCeEEEEECCCCC------------HHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CH
Confidence 77777765 2 2234456777777665421 4568889999999999874 67999944 89
Q ss_pred HHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKAL 433 (447)
Q Consensus 420 e~i~~~~~~l~~~l 433 (447)
+++++++++|++++
T Consensus 351 ~~i~~l~~~l~~~l 364 (365)
T 3get_A 351 YENEKFFTEFDKIL 364 (365)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
No 96
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1.3e-24 Score=212.08 Aligned_cols=332 Identities=14% Similarity=0.071 Sum_probs=211.4
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHh-----cCC
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNA-----LGR 124 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~-----~~~ 124 (447)
.+|++.+++.+++......+.......+...++++++++.+. .+.+++++++||++|++.+++.++..... .+.
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~ 120 (397)
T 3f9t_A 42 VLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLN-NKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSK 120 (397)
T ss_dssp CCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTT-CTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhC-CCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 578999999998876332221111234555678888888863 46679999999999999999987643110 012
Q ss_pred CCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCc
Q 013204 125 PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPET 204 (447)
Q Consensus 125 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~ 204 (447)
+++++|++.+++|++........ |.. +..++....+. .++++|++.+... +
T Consensus 121 ~~gd~vl~~~~~~~~~~~~~~~~-g~~------------~~~v~~~~~~~-------------~d~~~l~~~i~~~---~ 171 (397)
T 3f9t_A 121 NEHPKIIVPITAHFSFEKGREMM-DLE------------YIYAPIKEDYT-------------IDEKFVKDAVEDY---D 171 (397)
T ss_dssp CSSCEEEEETTCCTHHHHHHHHH-TCE------------EEEECBCTTSS-------------BCHHHHHHHHHHS---C
T ss_pred CCCeEEEECCcchhHHHHHHHHc-Cce------------eEEEeeCCCCc-------------CCHHHHHHHHhhc---C
Confidence 23578999999888865444332 221 11222211110 0147888888642 3
Q ss_pred EEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc--ccc---------ccccccCCCCCCeeeecc
Q 013204 205 IAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR--LGT---------MFGCDKYSIKPDLVSFAK 273 (447)
Q Consensus 205 ~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~--~g~---------~~~~~~~~~~~d~v~~sK 273 (447)
+++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+++.. .+. .+.... ++...+.+++|
T Consensus 172 ~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K 246 (397)
T 3f9t_A 172 VDGIIGIAGTTELGTIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHK 246 (397)
T ss_dssp CCEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTT
T ss_pred CeEEEEECCCCCCCCCCC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEcccc
Confidence 456666666677777765 99999999999999999999986432 222 222222 33333445679
Q ss_pred cCCCcccceeEEEeChh-HHHHhhhccCCCCc----cCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhH
Q 013204 274 ALSSAYMPIGAILVSPE-VSEVIHSQSNTLGS----FSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV 348 (447)
Q Consensus 274 ~l~gg~~~~g~~~~~~~-~~~~~~~~~~~~~~----~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L 348 (447)
.+++| .++|+++.+++ +.+.+......... ...+++...+++++.++++.+....-++..++.+++.+++.+.|
T Consensus 247 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L 325 (397)
T 3f9t_A 247 MGHCP-IPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKL 325 (397)
T ss_dssp TTCCC-SSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCC-CCceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776 69999888655 44444221110000 00112223355666666665543333556777888888999988
Q ss_pred hhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--CEEEEecCCCCCHHHHHHHH
Q 013204 349 KAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIMMSPPFIMSPEEVDELI 426 (447)
Q Consensus 349 ~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--~~iR~~~~~~~t~e~i~~~~ 426 (447)
+++ +...+.. ..+.++.+.+.. ...+.+.|.++||++.++. +.+|++++..+|++++++++
T Consensus 326 ~~~-g~~~~~~--~~~~~~~~~~~~--------------~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~ 388 (397)
T 3f9t_A 326 KEN-NFKPVIE--PILNIVAIEDED--------------YKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFI 388 (397)
T ss_dssp HHT-TCCBSSC--CSSSEEEEECTT--------------HHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHH
T ss_pred HHC-CCEEEcC--CCccEEEEEeCC--------------HHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHH
Confidence 877 4332222 334555554432 3458889999999999876 68999999889999999999
Q ss_pred HHHHHHHH
Q 013204 427 SKYGKALK 434 (447)
Q Consensus 427 ~~l~~~l~ 434 (447)
++|+++++
T Consensus 389 ~~l~~~l~ 396 (397)
T 3f9t_A 389 EILNSIKR 396 (397)
T ss_dssp HHHHHHC-
T ss_pred HHHHHhhC
Confidence 99998764
No 97
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.94 E-value=4.9e-25 Score=217.10 Aligned_cols=348 Identities=12% Similarity=0.109 Sum_probs=224.2
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc-c-ccCcC---CChHHHHHHHHHHHhcCcCCCCeEEEeCChh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-H-SFWNR---TTKPSLDLAKELLEMFTASKMAKVFFTNSGS 105 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~-~~~~~---~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGs 105 (447)
+|+.+++|..+.. ++.+|++.+++.+++.+.... + ..... ..+...++.+.+++++...+.+++++++||+
T Consensus 25 ~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t 100 (420)
T 1t3i_A 25 NGHPLVYLDNAAT----SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNAT 100 (420)
T ss_dssp TTEECEECBTTTC----CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred CCCceEEecCCcc----CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChH
Confidence 5677888765532 367899999999998763211 1 00001 1345678889999987422457899999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchh---hhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCCh
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTL---IAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETE 182 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (447)
+|++.+++.++... . .++++|++.+++||+... ......|... ..++.+..+.
T Consensus 101 ~a~~~~~~~~~~~~---~-~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~-------- 156 (420)
T 1t3i_A 101 EAINLVAYSWGMNN---L-KAGDEIITTVMEHHSNLVPWQMVAAKTGAVL------------KFVQLDEQES-------- 156 (420)
T ss_dssp HHHHHHHHHTHHHH---C-CTTCEEEEETTCCGGGTHHHHHHHHHHCCEE------------EEECBCTTSS--------
T ss_pred HHHHHHHHHhhhcc---c-CCCCEEEECcchhHHHHHHHHHHHHhcCcEE------------EEeccCCCCC--------
Confidence 99999999873210 1 234789999999999631 1111112111 1122111110
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccC
Q 013204 183 EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKY 262 (447)
Q Consensus 183 ~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~ 262 (447)
.+++++++.+. +++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|... +....+
T Consensus 157 -----~d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~ 220 (420)
T 1t3i_A 157 -----FDLEHFKTLLS----EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP--LDVQLI 220 (420)
T ss_dssp -----BCHHHHHHHCC----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHHH
T ss_pred -----cCHHHHHHhhC----CCceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhc-cCCcc--Cchhhc
Confidence 01366777664 35788899999888888776 9999999999999999999997 43321 112222
Q ss_pred CCCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCCCCc-------------cCcCCCCCCcHHHHHHHHH-HHH
Q 013204 263 SIKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLGS-------------FSHGFTYSGHPVSCAVAIE-ALK 326 (447)
Q Consensus 263 ~~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~-------------~~~~~t~~~~~~~~~aa~a-~l~ 326 (447)
.+|++++| |.++. .++|++++++++++.+......... .....+.+.+++.+.++++ +++
T Consensus 221 --~~di~~~s~sK~~~~--~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 296 (420)
T 1t3i_A 221 --DCDWLVASGHKMCAP--TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVD 296 (420)
T ss_dssp --TCSEEEEEGGGTTSC--TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHH
T ss_pred --CCCEEEEehhhhcCC--CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHH
Confidence 37888765 95543 3589999999998887532110000 0000122344455555444 677
Q ss_pred HHhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeEe---eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 327 IYKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR---GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 327 ~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
.+.+ +++.++.+++.+++.+.|+++.+..+..... +.|.++.+.+... ....+.+.|.++||
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~gi 364 (420)
T 1t3i_A 297 YLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGL------------HASDVATMVDQDGI 364 (420)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTB------------CHHHHHHHHHTTTE
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCC------------CHHHHHHHHHHCCe
Confidence 6654 4566777888888888887753222221111 2367777766421 13457788999999
Q ss_pred eEEee-------------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 401 LVRVS-------------GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 401 ~~~~~-------------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.+.++ .+.+|++++..++++++++++++|+++++++++
T Consensus 365 ~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 365 AIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp ECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred EEeeccccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99876 356999999889999999999999999987654
No 98
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.94 E-value=2.4e-25 Score=217.12 Aligned_cols=338 Identities=14% Similarity=0.100 Sum_probs=224.4
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCccccc--CcCC--ChHHHHHHHHHHHhcCcCCCCeEEEeCChhh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSF--WNRT--TKPSLDLAKELLEMFTASKMAKVFFTNSGSE 106 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~--~~~~~~l~~~l~~~~~~~~~~~v~~~~sGse 106 (447)
++..|+|.. ..|+.+|++.+++.+++.+....... ...+ .+...++.+.+++++. .+.+++++++||++
T Consensus 15 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g-~~~~~v~~~~g~t~ 87 (390)
T 1elu_A 15 ANKTYFNFG------GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFN-VDPNTITITDNVTT 87 (390)
T ss_dssp TTSEECCTT------TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTT-SCGGGEEEESSHHH
T ss_pred CCeEEecCC------ccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcC-CCHHHEEEeCChHH
Confidence 456677752 35778899999999988653211000 0011 2567789999999873 45668999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCccccCCCCCCCCcceecCCC--CcccCCCCCCC
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLPALHQKFDLPAPFVLHTDCP--HYWRYAHPGET 181 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 181 (447)
|++.+++.++ . .++++|++.+++||+..... ....|... ..++.+ +.+.
T Consensus 88 a~~~~~~~~~------~-~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~~~------- 141 (390)
T 1elu_A 88 GCDIVLWGLD------W-HQGDEILLTDCEHPGIIAIVQAIAARFGITY------------RFFPVAATLNQG------- 141 (390)
T ss_dssp HHHHHHHHSC------C-CTTCEEEEETTCCHHHHHHHHHHHHHHCCEE------------EEECCGGGSSSS-------
T ss_pred HHHHHHhCCC------C-CCCCEEEEecCcccHHHHHHHHHHHHhCcEE------------EEEcCCCCCCcc-------
Confidence 9999999762 0 33578999999999975331 11112111 112221 0000
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHH----hcCCEEEEehhhcCCCcccccc
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVK----KYDILFIADEVICAFGRLGTMF 257 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~----~~g~~li~DEv~~g~g~~g~~~ 257 (447)
.++++|++.+. +++++|+++++++.+|.+.+ +++|.++|+ +||+++|+||+|+ +|..+
T Consensus 142 ------~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~--- 203 (390)
T 1elu_A 142 ------DAAAVLANHLG----PKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLP--- 203 (390)
T ss_dssp ------CHHHHHHTTCC----TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBC---
T ss_pred ------chHHHHHHhcC----CCceEEEEeccccCCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcC---
Confidence 11355665553 35788889998888888776 999999999 9999999999997 55432
Q ss_pred ccccCCCCCCeee--ecccCCCcccceeEEEeChhHHHHhhhccCCCCc---------------cCcCCCCCCcHHHHHH
Q 013204 258 GCDKYSIKPDLVS--FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGS---------------FSHGFTYSGHPVSCAV 320 (447)
Q Consensus 258 ~~~~~~~~~d~v~--~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~---------------~~~~~t~~~~~~~~~a 320 (447)
.......+|+++ ++|.+.+| .++|++++++++++.+.......+. .......+.+++++++
T Consensus 204 -~~~~~~~~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 281 (390)
T 1elu_A 204 -LDFSRLEVDYYAFTGHKWFAGP-AGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAG 281 (390)
T ss_dssp -CCTTTSCCSEEEEESSSTTCCC-TTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHH
T ss_pred -CChhhcCCCEEEccccccccCC-CceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHH
Confidence 122234578876 78977776 6899999999888776531100000 0011233557777777
Q ss_pred HHHHHHHHhhhc----HHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH
Q 013204 321 AIEALKIYKERN----IVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE 396 (447)
Q Consensus 321 a~a~l~~~~~~~----~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (447)
+.++++.+...+ ..++++++.+++.+.|+++.+..+....++.|.++.+.+.... ....+.+.|.
T Consensus 282 ~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~ 350 (390)
T 1elu_A 282 LLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPL-----------GHRAIVQKLE 350 (390)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSS-----------CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCCCC-----------CHHHHHHHHH
Confidence 777887665433 5677777888888888775322211111356777777764211 1456888899
Q ss_pred HcCceEEeeC--CEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 397 KHGMLVRVSG--DNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 397 ~~Gi~~~~~g--~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
++||++.++. +.+|++++..++++++++++++|+++
T Consensus 351 ~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 351 EQRIYLRTIADPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp HTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred HCCEEEEecCCCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 9999999875 68999999899999999999998753
No 99
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.94 E-value=1.6e-25 Score=221.32 Aligned_cols=348 Identities=11% Similarity=0.063 Sum_probs=217.8
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcC------CcccccCcCCCh-HHHHHHHHHHHhcC---c----CCCCeE
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTL------PFYHSFWNRTTK-PSLDLAKELLEMFT---A----SKMAKV 98 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~------~~~~~~~~~~~~-~~~~l~~~l~~~~~---~----~~~~~v 98 (447)
+.++||.++. ++++ +|.+.+++.+..... .........+.. ...++.+.+++++. + .+.+++
T Consensus 36 ~~~i~l~~~~--~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i 111 (428)
T 1iay_A 36 NGVIQMGLAE--NQLC--LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERV 111 (428)
T ss_dssp TSBEECSSCC--CCSS--HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSC
T ss_pred Cceeeecccc--chhh--HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhE
Confidence 4688997664 5666 478888877532100 000000001111 13455555555542 1 356789
Q ss_pred EEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCC
Q 013204 99 FFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHP 178 (447)
Q Consensus 99 ~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (447)
++++|++++++.+++.++ ..+++|++.+++||+.........|... ..++......+
T Consensus 112 ~~~~G~~~ai~~~~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~~g~~~------------~~v~~~~~~~~--- 168 (428)
T 1iay_A 112 VMAGGATGANETIIFCLA--------DPGDAFLVPSPYYPAFNRDLRWRTGVQL------------IPIHCESSNNF--- 168 (428)
T ss_dssp EEEEHHHHHHHHHHHHHC--------CTTCEEEEESSCCTTHHHHTTTTTCCEE------------EEECCCTTTTT---
T ss_pred EEccChHHHHHHHHHHhC--------CCCCeEEEccCCCcchHHHHHHhcCCEE------------EEeecCCccCC---
Confidence 999999999999999773 2347899999999997643332233221 11121100000
Q ss_pred CCChhHHHHHHHHHHHHHHHhh--CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccc
Q 013204 179 GETEEEYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTM 256 (447)
Q Consensus 179 ~~~~~~~~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~ 256 (447)
.. +++++++.+... ...++++|+++..++.+|. ..+.+++++|.++|++||+++|+||+|+++++.+..
T Consensus 169 ~~--------d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~ 239 (428)
T 1iay_A 169 KI--------TSKAVKEAYENAQKSNIKVKGLILTNPSNPLGT-TLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ 239 (428)
T ss_dssp CC--------CHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSC
T ss_pred cC--------CHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCC-cCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCC
Confidence 00 136777776532 2234666665555555665 468899999999999999999999999987655432
Q ss_pred c-cc-cc--C----CCCCC----eeeecccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHH
Q 013204 257 F-GC-DK--Y----SIKPD----LVSFAKALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIE 323 (447)
Q Consensus 257 ~-~~-~~--~----~~~~d----~v~~sK~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a 323 (447)
+ .. .. . ++.+| +.++||.++.+++|+|++++ ++++++.+... ..+++.++++++++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~ 310 (428)
T 1iay_A 240 FVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKM---------SSFGLVSTQTQYFLAA 310 (428)
T ss_dssp CCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHH---------HTTSCCCHHHHHHHHH
T ss_pred ccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHH---------HhcccCCHHHHHHHHH
Confidence 2 11 11 1 23367 44789999844489999998 67888877632 1235678888888888
Q ss_pred HHHHHh-----hhcHHHHHHHHHHHHHHhHhhccCCCceeeEee-eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH
Q 013204 324 ALKIYK-----ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG-TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK 397 (447)
Q Consensus 324 ~l~~~~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 397 (447)
+++... -++..++++++.+++.+.|+++ +..+ ..+ .|.++.+.+....... .......+.+.|++
T Consensus 311 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~---~~~~~g~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~ 381 (428)
T 1iay_A 311 MLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKC---LKNNAGLFCWMDLRPLLRES-----TFDSEMSLWRVIIN 381 (428)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCB---CCCSSSSEEEEECGGGCSSS-----SHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcc---cCCCeeEEEEEechhhcCCC-----chhHHHHHHHHHHH
Confidence 776422 1345667777788888888776 3222 233 4667777775421100 00023457888887
Q ss_pred c-CceEEeeC-------CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 398 H-GMLVRVSG-------DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 398 ~-Gi~~~~~g-------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+ ||++.+++ +.+|++++ .++++++++++++|++++++
T Consensus 382 ~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 382 DVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp TSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred hCCEEEeCchhhCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHHhc
Confidence 6 99998753 47999987 58999999999999998764
No 100
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.94 E-value=8.8e-25 Score=214.75 Aligned_cols=357 Identities=10% Similarity=0.011 Sum_probs=218.3
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCc-ccccCcCCChHHHHHHHHHHHhcCc-CCC-CeEEEeCChhhHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF-YHSFWNRTTKPSLDLAKELLEMFTA-SKM-AKVFFTNSGSEAN 108 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~-~~~-~~v~~~~sGseA~ 108 (447)
+..++||..+. ..++ .+|++.+++.+++.+... .+....+..+....+++.+.+.+.. ..+ +++++++||++|+
T Consensus 22 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~ 98 (410)
T 3e2y_A 22 DPSVVNLGQGF--PDIS-PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSL 98 (410)
T ss_dssp STTSEECSSCC--CCSC-CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CCCeEEecCCC--CCCC-CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHH
Confidence 45678887774 3344 689999999999875311 1111111233444455555443321 344 7899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
+.+++.+. .++++|++.+++|++........+..... ++........ .....+.+ ..
T Consensus 99 ~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~-------------~~~~~~~~~g-~~~~~~~~-~~ 155 (410)
T 3e2y_A 99 FNSIQGLV--------DPGDEVIIMVPFYDCYEPMVRMAGAVPVF-------------IPLRSKPTDG-MKWTSSDW-TF 155 (410)
T ss_dssp HHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEEEE-------------EECEECCCCS-SCCBGGGE-EC
T ss_pred HHHHHHhc--------CCCCEEEEeCCCchhhHHHHHHcCCEEEE-------------Eecccccccc-ccccccCC-cC
Confidence 99999773 34578999999999886554433221111 1110000000 00000000 00
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-ccccCCC---
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDKYSI--- 264 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~~~~--- 264 (447)
+++++++.+. +++++|++++.++.+|.+ ++.+.+++|+++|++||+++|+||+|+++.+.|... ....+..
T Consensus 156 d~~~l~~~~~----~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 230 (410)
T 3e2y_A 156 DPRELESKFS----SKTKAIILNTPHNPLGKV-YTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWE 230 (410)
T ss_dssp CHHHHHTTCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGG
T ss_pred CHHHHHhhcC----CCceEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccC
Confidence 1366666553 357777777777777754 477889999999999999999999999887776432 2222221
Q ss_pred -CCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH-----h----hhcHH
Q 013204 265 -KPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY-----K----ERNIV 334 (447)
Q Consensus 265 -~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~-----~----~~~~~ 334 (447)
..++.++||.++.+++|+|++++++++++.+.. .....+++.+++++.++.++++.. . -++..
T Consensus 231 ~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 303 (410)
T 3e2y_A 231 RTITIGSAGKTFSVTGWKLGWSIGPAHLIKHLQT-------VQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLP 303 (410)
T ss_dssp GEEEEEEHHHHSSCGGGCCEEEECCHHHHHHHHH-------HHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHH
T ss_pred eEEEEecchhhcCCCCceEEEEEECHHHHHHHHH-------HHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHH
Confidence 123346899998433899999999999888763 234457778899998888888731 1 12344
Q ss_pred HHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHH-HHcCceEEeeC-------
Q 013204 335 EQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC-EKHGMLVRVSG------- 406 (447)
Q Consensus 335 ~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~g------- 406 (447)
++++++.+++.+.|+++ ++.......|.++.+++.........-.........+..++ .++||++.++.
T Consensus 304 ~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~ 380 (410)
T 3e2y_A 304 KELEVKRDRMVRLLNSV---GLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKS 380 (410)
T ss_dssp HHHHHHHHHHHHHHHTT---TCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTT
T ss_pred HHHHHHHHHHHHHHHHC---CCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCC
Confidence 55566666676666654 33223344566677776542211000000001122455554 56799998742
Q ss_pred -----CEEEEecCCCCCHHHHHHHHHHHHH
Q 013204 407 -----DNIMMSPPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 407 -----~~iR~~~~~~~t~e~i~~~~~~l~~ 431 (447)
+.+|++ +..++++|++++++|++
T Consensus 381 ~~~~~~~iRis--~~~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 381 KPHFEKLVRFC--FIKKDSTLDAAEEIFRA 408 (410)
T ss_dssp HHHHTTEEEEE--CCCCHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEE--EcCCHHHHHHHHHHHHh
Confidence 569999 66799999999999875
No 101
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.94 E-value=1.6e-25 Score=217.85 Aligned_cols=339 Identities=12% Similarity=0.080 Sum_probs=216.0
Q ss_pred EEEeCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChh
Q 013204 26 YVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGS 105 (447)
Q Consensus 26 ~~~d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGs 105 (447)
.++|.|++.+.++...++..+++|..++..+.+ .++++++++.+. .+ +.++|++||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~---------------------~~~~~~l~~~~~-~~-~~v~~~~sgt 61 (379)
T 3ke3_A 5 LRQDIDPNGLLEYSVVYTDRALNHMSKAFQEVM---------------------NDLLSNLKTVYN-AE-AAVIIPGSGT 61 (379)
T ss_dssp ---CCSTTSCCCCCSSCCTTSCCTTSHHHHHHH---------------------HHHHHHHHHHHT-CS-EEEEEESCHH
T ss_pred hhccCCHHHHHHHHHhccCCCCCCCCHHHHHHH---------------------HHHHHHHHHHhC-CC-CEEEEcCChh
Confidence 467889999999876665556677776555332 245556666663 23 5789999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcc-cCCccccCCCCCCCCcceecCCCC----cccCCCCCC
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASL-SGLPALHQKFDLPAPFVLHTDCPH----YWRYAHPGE 180 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 180 (447)
+|++.+++.+ .++++||+++++||+.....+.. .+... .+..++.+. .+..+.
T Consensus 62 ~a~~~~~~~~---------~~gd~vi~~~~~~~~~~~~~~~~~~g~~~----------~~~~~~~~~~g~~~~~~~~--- 119 (379)
T 3ke3_A 62 YGMEAVARQL---------TIDEDCLIIRNGWFSYRWTQILEKGKFAK----------SSTVLTAERTEDTEAPKPF--- 119 (379)
T ss_dssp HHHHHHHHHH---------CTTCEEEEEECSHHHHHHHHHHHHHCCSS----------EEEEEECEESSCCSSCCCE---
T ss_pred HHHHHHHHhC---------CCCCeEEEEeCCchhHHHHHHHHHhCCCC----------ceEEEeccccccccccCCC---
Confidence 9999988654 34578999999999975443321 11100 001111110 000000
Q ss_pred ChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccc
Q 013204 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD 260 (447)
Q Consensus 181 ~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~ 260 (447)
...+++++++.+... ++++|++..+++..|. ..+.+++++|+++|++||+++|+||+++ | +..+...
T Consensus 120 -----~~~d~~~l~~~i~~~---~~~~v~~~~~~~~~G~-~~~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~~~~~~ 186 (379)
T 3ke3_A 120 -----APVDIETAVAKIKED---KSAIVYAPHVETSSGI-ILSEEYIKALSEAVHSVGGLLVIDCIAS--G--CVWLDMK 186 (379)
T ss_dssp -----ECCCHHHHHHHHHHH---TCSEEEEESEETTTTE-ECCHHHHHHHHHHHHHTTCEEEEECTTC--T--TCCCCHH
T ss_pred -----CCCCHHHHHHHHhhc---CCcEEEEEeecCCCce-eCCHHHHHHHHHHHHHcCCEEEEEeccc--C--Ccccccc
Confidence 001147788877532 2456777777777774 4567899999999999999999999987 3 2344444
Q ss_pred cCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCcc---------------CcCCCCCCcHHHHHHHHHHH
Q 013204 261 KYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSF---------------SHGFTYSGHPVSCAVAIEAL 325 (447)
Q Consensus 261 ~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~t~~~~~~~~~aa~a~l 325 (447)
.+++...+.+++|+++++ .++|++++++++++.+.........+ ....+++.++.+++++.+++
T Consensus 187 ~~~~d~~~~s~~K~l~~~-~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal 265 (379)
T 3ke3_A 187 ELGIDVLISAPQKGWSST-PCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAI 265 (379)
T ss_dssp HHTCSEEEECTTTTTCSC-CCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHH
T ss_pred ccCCCEEEecchhhcCCC-CceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHH
Confidence 455433333456999886 57999999999988876421111000 01123467788888888899
Q ss_pred HHHhhh---cHHHHHHHHHHHHHHhHhhccCCCceeeEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCce
Q 013204 326 KIYKER---NIVEQVNKIAPKFQDGVKAFSDSPIIGEIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGML 401 (447)
Q Consensus 326 ~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 401 (447)
+.+.+. +..++.+++.+++++.|+++ +..+..... ..+.+..+..... ...+.+.|.++||+
T Consensus 266 ~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~~~-------------~~~~~~~L~~~Gi~ 331 (379)
T 3ke3_A 266 LEAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTERD-------------DMHKGSAFAEAGLQ 331 (379)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECSCH-------------HHHSSHHHHHTTCC
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccCCc-------------chHHHHHHHHCCeE
Confidence 887654 56677788888999988876 322221110 1122222322111 11125678899999
Q ss_pred EEee----------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 402 VRVS----------GDNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 402 ~~~~----------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+.++ ++.+|++++..+|++||++++++|+++++++.
T Consensus 332 v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 332 IAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp CEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred EeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 8875 46799999999999999999999999998764
No 102
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.94 E-value=3.2e-25 Score=213.83 Aligned_cols=316 Identities=14% Similarity=0.118 Sum_probs=208.5
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
.++++||+++. +++|+ +|.+ + +..... .+.....++.+.+++++ +.+++++++++|+++|++.+
T Consensus 28 ~~~~i~l~~~~--~~~~~-~~~v--a----~~~~~~------Y~~~~~~~lr~~la~~~-~~~~~~v~~~~G~~~ai~~~ 91 (356)
T 1fg7_A 28 GNGDVWLNANE--YPTAV-EFQL--T----QQTLNR------YPECQPKAVIENYAQYA-GVKPEQVLVSRGADEGIELL 91 (356)
T ss_dssp TTCSEECSSCC--CSSCC-CCCC--C----CCCTTS------CCCSSCHHHHHHHHHHH-TSCGGGEEEESHHHHHHHHH
T ss_pred CCceEEeeCCC--CCCCC-CHhH--h----hhhhcc------CCCccHHHHHHHHHHHh-CCChHHEEEcCCHHHHHHHH
Confidence 35789998876 78886 4555 2 121111 12223567888888887 34567999999999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (447)
++.+. ++++++|++.+++||++.......+.... .++..+.+. . +++
T Consensus 92 ~~~~~-------~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~-------------~v~~~~~~~-----~--------d~~ 138 (356)
T 1fg7_A 92 IRAFC-------EPGKDAILYCPPTYGMYSVSAETIGVECR-------------TVPTLDNWQ-----L--------DLQ 138 (356)
T ss_dssp HHHHC-------CTTTCEEEECSSSCTHHHHHHHHHTCEEE-------------ECCCCTTSC-----C--------CHH
T ss_pred HHHHh-------CCCCCEEEEeCCChHHHHHHHHHcCCEEE-------------EeeCCCCCC-----C--------CHH
Confidence 99763 12327899999999998765544322111 111111000 0 125
Q ss_pred HHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccc-ccCCCCCCeee
Q 013204 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGC-DKYSIKPDLVS 270 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~-~~~~~~~d~v~ 270 (447)
++++.+. ++++|++++.++.+|.+ .+.+++++|.++|+ ||+++|+||+|++++........ +.++....+.+
T Consensus 139 ~l~~~i~-----~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s 211 (356)
T 1fg7_A 139 GISDKLD-----GVKVVYVCSPNNPTGQL-INPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRT 211 (356)
T ss_dssp HHHTSCT-----TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEE
T ss_pred HHHHHhc-----CCCEEEEeCCCCCCCCC-CCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEec
Confidence 5555442 34566666666666654 57899999999999 99999999999987632111111 21222223447
Q ss_pred ecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh---hhcHHHHHHHHHHHHHHh
Q 013204 271 FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK---ERNIVEQVNKIAPKFQDG 347 (447)
Q Consensus 271 ~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~---~~~~~~~~~~~~~~l~~~ 347 (447)
+||.++.+++|+|++++++++++.+... ..+++.+++++.++.++|+... -++..++++++++++.+.
T Consensus 212 ~sK~~g~~G~r~G~~~~~~~~~~~l~~~---------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (356)
T 1fg7_A 212 LSKAFALAGLRCGFTLANEEVINLLMKV---------IAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAA 282 (356)
T ss_dssp SSSTTCCGGGCCEEEEECHHHHHHHHHH---------SCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhhcCchhhhEEEEeCHHHHHHHHHh---------cCCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 8999974348999999999998888642 1345678899988888886432 233456667777777777
Q ss_pred HhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC------CEEEEecCCCCCHHH
Q 013204 348 VKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG------DNIMMSPPFIMSPEE 421 (447)
Q Consensus 348 L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g------~~iR~~~~~~~t~e~ 421 (447)
|+++.. +....++.|.++.+.+. . ...+.++|.++||++.+++ +.+|+++. ++++
T Consensus 283 L~~~~~--~~~~~~~~~~~~~~~~~--~------------~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e 343 (356)
T 1fg7_A 283 LKEIPC--VEQVFDSETNYILARFK--A------------SSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREE 343 (356)
T ss_dssp HHHSTT--EEEECCCSSSEEEEEET--T------------HHHHHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHH
T ss_pred HHhCCC--ceEECCCCCeEEEEECC--C------------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHH
Confidence 776521 12233456777777764 1 3458888999999999832 57999954 7899
Q ss_pred HHHHHHHHHH
Q 013204 422 VDELISKYGK 431 (447)
Q Consensus 422 i~~~~~~l~~ 431 (447)
+++++++|++
T Consensus 344 ~~~~~~~l~~ 353 (356)
T 1fg7_A 344 SQRVIDALRA 353 (356)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 103
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.94 E-value=3.1e-26 Score=224.03 Aligned_cols=340 Identities=11% Similarity=0.039 Sum_probs=207.0
Q ss_pred EEeCCCCEEEecCCccccccCC--CCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC-----CCCeEE
Q 013204 27 VYDVNGKKYLDSLAGLWCTALG--GSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS-----KMAKVF 99 (447)
Q Consensus 27 ~~d~dg~~~lD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~v~ 99 (447)
+.+..|+.++||.++.+.++.+ +.+|++.+++.+.+.+... +. ..+.....++.+.+++++... +.++++
T Consensus 20 ~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~--y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~ 96 (396)
T 2q7w_A 20 FRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETT-KN--YLGIDGIPEFGRCTQELLFGKGSALINDKRAR 96 (396)
T ss_dssp --------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCC-CC--CCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEE
T ss_pred HhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccc-cC--CCCCCCCHHHHHHHHHHHhcCCCCccccccEE
Confidence 3334567899999987555555 4679999999988764211 11 113334556777777665221 357899
Q ss_pred E--eCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC--CcccC
Q 013204 100 F--TNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP--HYWRY 175 (447)
Q Consensus 100 ~--~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 175 (447)
+ ++||++|++.+++++... .++++|++.+++||++.......+.... .++.. +.+.
T Consensus 97 ~~~~~g~~~a~~~~~~~~~~~------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~-------------~~~~~~~~~~~- 156 (396)
T 2q7w_A 97 TAQTPGGTGALRVAADFLAKN------TSVKRVWVSNPSWPNHKSVFNSAGLEVR-------------EYAYYDAENHT- 156 (396)
T ss_dssp EEEESHHHHHHHHHHHHHHHH------SCCCEEEEEESCCTHHHHHHHHTTCEEE-------------EEECEETTTTE-
T ss_pred EEecccchhhHHHHHHHHHHh------CCCCEEEEcCCCchhHHHHHHHcCCceE-------------EEecccCCCCC-
Confidence 8 999999999999876533 2347899999999998765554332111 11110 0000
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccc-
Q 013204 176 AHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG- 254 (447)
Q Consensus 176 ~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g- 254 (447)
.+++++++.+....+ .++++++...++.+| ..++.+++++|+++|++||+++|+||+|+++++.|
T Consensus 157 ------------~d~~~l~~~l~~~~~-~~~~v~~~~p~nptG-~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~ 222 (396)
T 2q7w_A 157 ------------LDFDALINSLNEAQA-GDVVLFHGCCHNPTG-IDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLE 222 (396)
T ss_dssp ------------ECHHHHHHHHTTCCT-TCEEEEECSSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHH
T ss_pred ------------cCHHHHHHHHHhCCC-CCEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcc
Confidence 014778887764322 344555444444445 35678999999999999999999999999886653
Q ss_pred -cccccccCCCCCC----eeeecccCCCcccceeEEEe---Chh----HHHHhhhccCCCCccCcCCCCCCcHHHHHHHH
Q 013204 255 -TMFGCDKYSIKPD----LVSFAKALSSAYMPIGAILV---SPE----VSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAI 322 (447)
Q Consensus 255 -~~~~~~~~~~~~d----~v~~sK~l~gg~~~~g~~~~---~~~----~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~ 322 (447)
.......+...+| +.++||.++.+++|+|++++ +++ +++.+.. .........++++++++.
T Consensus 223 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~ 295 (396)
T 2q7w_A 223 EDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKA-------AIRANYSNPPAHGASVVA 295 (396)
T ss_dssp HHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHH-------HHHTTTSSCCHHHHHHHH
T ss_pred chhHHHHHHHhcCCcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHH-------HHhhccCCCCcHHHHHHH
Confidence 2222222211122 33689999843389999997 553 4444431 011122345888888888
Q ss_pred HHHHHH--------hhhcHHHHHHHHHHHHHHhHhhcc---CCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHH
Q 013204 323 EALKIY--------KERNIVEQVNKIAPKFQDGVKAFS---DSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAY 390 (447)
Q Consensus 323 a~l~~~--------~~~~~~~~~~~~~~~l~~~L~~l~---~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~ 390 (447)
++|+.. .-++..++++++.+++.+.|+++. .... ..+. |.++.+.+. ...
T Consensus 296 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~---~~~~~~~~~~~~~~---------------~~~ 357 (396)
T 2q7w_A 296 TILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSF---IIKQNGMFSFSGLT---------------KEQ 357 (396)
T ss_dssp HHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTH---HHHCCSSEEECCCC---------------HHH
T ss_pred HHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcce---ecCCCceEEEecCC---------------HHH
Confidence 877532 112344566777778888887762 1221 1223 334333221 123
Q ss_pred HHHHHHHcCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 391 FGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 391 ~~~~l~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
+.+.+.++||++.++ +|++++. .+++++++++++|+++
T Consensus 358 ~~~~l~~~gv~v~~~---~Ris~~~-~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 358 VLRLREEFGVYAVAS---GRVNVAG-MTPDNMAPLCEAIVAV 395 (396)
T ss_dssp HHHHHHHHCEECCTT---CEEEGGG-CCTTTHHHHHHHHHHH
T ss_pred HHHHHHhcCeeecCC---ceEEEee-cCHHHHHHHHHHHHhc
Confidence 556677899998763 6999774 4999999999999875
No 104
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.94 E-value=5.2e-25 Score=217.28 Aligned_cols=344 Identities=18% Similarity=0.175 Sum_probs=220.7
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHh--cCCcc-----cccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeC
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN--TLPFY-----HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTN 102 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~--~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~ 102 (447)
.++..|||+.++ |+.+|++++++.+++. +.... +.......+...++++++++.+. .+.++++|++
T Consensus 20 ~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~~~~~v~~~~ 92 (423)
T 3lvm_A 20 MKLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVG-ADPREIVFTS 92 (423)
T ss_dssp CCSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHT-CCGGGEEEES
T ss_pred cCCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcC-CCCCeEEEeC
Confidence 355689998654 4679999999998887 32111 00001123455778888888873 4566999999
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcc--cCCccccCCCCCCCCcceecCCCCcccCCCCCC
Q 013204 103 SGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASL--SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180 (447)
Q Consensus 103 sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (447)
||++|++.+++.+..+.. .+++.|++..+.|++........ .+... ..++....+.
T Consensus 93 ggt~a~~~a~~~l~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~------ 150 (423)
T 3lvm_A 93 GATESDNLAIKGAANFYQ----KKGKHIITSKTEHKAVLDTCRQLEREGFEV------------TYLAPQRNGI------ 150 (423)
T ss_dssp SHHHHHHHHHHHHHHHHT----TTCCEEEEETTSCHHHHHHHHHHHHTTCEE------------EEECCCTTSC------
T ss_pred ChHHHHHHHHHHHHHhhc----cCCCEEEECCccchHHHHHHHHHHHcCCEE------------EEeccCCCCc------
Confidence 999999999997653211 12578999999998875433221 12111 1122211100
Q ss_pred ChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccc
Q 013204 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD 260 (447)
Q Consensus 181 ~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~ 260 (447)
.++++|++.+. +++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|++ +.. ...
T Consensus 151 -------~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~----~~~ 210 (423)
T 3lvm_A 151 -------IDLKELEAAMR----DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GKL----PID 210 (423)
T ss_dssp -------CCHHHHHHHCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TTS----CCC
T ss_pred -------cCHHHHHHhcC----CCcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CCC----CcC
Confidence 01367777664 36789999999988888877 99999999999999999999873 322 122
Q ss_pred cCCCCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHH
Q 013204 261 KYSIKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQ 336 (447)
Q Consensus 261 ~~~~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~ 336 (447)
.....+|++++| |.+++ .++|+++++++.++.+..............+.+.++.+++++.++++.+.. ++..++
T Consensus 211 ~~~~~~di~~~s~sK~~g~--~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~ 288 (423)
T 3lvm_A 211 LSQLKVDLMSFSGHKIYGP--KGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMER 288 (423)
T ss_dssp TTTSCCSEEEEESTTTTSC--SSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCEEEechHHhcCC--CCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233457888765 95543 469999999887665532100000000122445577777777788876654 556677
Q ss_pred HHHHHHHHHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----------
Q 013204 337 VNKIAPKFQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---------- 405 (447)
Q Consensus 337 ~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------- 405 (447)
++++.+++++.|++++...+.... ...+.++.+.+.... ...+.+.|.+ +.+.++
T Consensus 289 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~l~~~l~~--i~v~~g~~~~~~~~~~ 354 (423)
T 3lvm_A 289 LRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVE------------GESLIMALKD--LAVSSGSACTSASLEP 354 (423)
T ss_dssp HHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEETTSC------------HHHHHHHTTT--EECBCCCC-----CCC
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeCCCC------------HHHHHHHHhh--heeccCccccCCCccc
Confidence 788888888888765322211110 111244455552211 3456666655 555442
Q ss_pred --------------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 406 --------------GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 406 --------------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.+.+|++++..+++++|++++++|+++++++++
T Consensus 355 ~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 355 SYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp CHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 267999999999999999999999999998875
No 105
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.94 E-value=3.7e-24 Score=208.40 Aligned_cols=339 Identities=16% Similarity=0.143 Sum_probs=226.8
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
.+.|+|..+. ++.+|++.+++.+.+.. .+.. ...+...++++++++.+.....+++++++||++|++.+
T Consensus 19 ~~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~~~---~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~ 87 (386)
T 2dr1_A 19 PKYKLFTAGP------VACFPEVLEIMKVQMFS--HRSK---EYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEAS 87 (386)
T ss_dssp CCSEECCSSS------CCCCHHHHHHTTSCCCC--TTSH---HHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHH
T ss_pred ccceeecCCC------cCCcHHHHHHHhccccc--ccCH---HHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHH
Confidence 3568887432 45789998888776543 1111 12456678888888887422246799999999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccc--hhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGS--TLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
++.+. .++++|++.+++||+. ..... ..|... ..++.+..+. . +
T Consensus 88 ~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~-~~g~~~------------~~v~~~~~~~-----~--------d 133 (386)
T 2dr1_A 88 IRNGV--------SKGGKVLVTIIGAFGKRYKEVVE-SNGRKA------------VVLEYEPGKA-----V--------K 133 (386)
T ss_dssp HHHHS--------CTTCEEEEEESSHHHHHHHHHHH-HTTCEE------------EEEECCTTCC-----C--------C
T ss_pred HHHhh--------cCCCeEEEEcCCchhHHHHHHHH-HhCCce------------EEEecCCCCC-----C--------C
Confidence 99763 3357899999999983 22222 122211 1122111000 0 1
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV 269 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v 269 (447)
+++|++.+... +++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|... .... ...+|++
T Consensus 134 ~~~l~~~l~~~--~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~--~~~~di~ 202 (386)
T 2dr1_A 134 PEDLDDALRKN--PDVEAVTITYNETSTGVLNP----LPELAKVAKEHDKLVFVDAVSA-MGGAD--IKFD--KWGLDVV 202 (386)
T ss_dssp HHHHHHHHHHC--TTCCEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTBC--CCTT--TTTCSEE
T ss_pred HHHHHHHHhcC--CCCcEEEEEeecCCcchhCC----HHHHHHHHHHcCCeEEEEcccc-ccCcc--cccc--ccCCcEE
Confidence 47788877541 24667888888888887766 8999999999999999999997 33321 1222 2346888
Q ss_pred eec--ccCCCcccceeEEEeChhHHHHhhhccCC---------CCcc--CcCCCCCCcHHHHHHHHHHHHHHhhh----c
Q 013204 270 SFA--KALSSAYMPIGAILVSPEVSEVIHSQSNT---------LGSF--SHGFTYSGHPVSCAVAIEALKIYKER----N 332 (447)
Q Consensus 270 ~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~---------~~~~--~~~~t~~~~~~~~~aa~a~l~~~~~~----~ 332 (447)
++| |.++++ .++|++++++++++.+...... .... ....+++.++++++++.++++.+.+. +
T Consensus 203 ~~s~sK~~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~ 281 (386)
T 2dr1_A 203 FSSSQKAFGVP-PGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEK 281 (386)
T ss_dssp EEETTSTTCCC-SSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred EEeccccccCC-CceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence 765 999986 3689999999988876321000 0000 01235567888888888889876543 5
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----C
Q 013204 333 IVEQVNKIAPKFQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----G 406 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----g 406 (447)
..++++++.+++.+.|+++ +..+.... ...+.++.+.+.... ....+.+.|+++||.+.++ .
T Consensus 282 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~v~~~~~~~~~ 349 (386)
T 2dr1_A 282 WLEMYEKRAKMVREGVREI-GLDILAEPGHESPTITAVLTPPGI-----------KGDEVYEAMRKRGFELAKGYGSVKE 349 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCBSSCTTCBCSSEEEEECCTTC-----------CHHHHHHHHHHTTEECEECCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHc-CCeeCcCccccCCceEEEEcCCCC-----------CHHHHHHHHHHCCeEEecCccccCC
Confidence 6778888889999988876 33322110 114566667664211 1456888999999999875 3
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
+.+|++++..++++++++++++|+++++++..+
T Consensus 350 ~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 382 (386)
T 2dr1_A 350 KTFRIGHMGYMKFEDIQEMLDNLREVINELKKQ 382 (386)
T ss_dssp TEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 679999988899999999999999999876543
No 106
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.94 E-value=7.3e-25 Score=216.92 Aligned_cols=347 Identities=8% Similarity=0.012 Sum_probs=213.3
Q ss_pred eCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccC-cCCChHHHHHHHHHHHhcC---cCCCCeEEEeCCh
Q 013204 29 DVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFW-NRTTKPSLDLAKELLEMFT---ASKMAKVFFTNSG 104 (447)
Q Consensus 29 d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~v~~~~sG 104 (447)
+.+|++++||.++. +.-..+|.|.+++.+++++....+... ..+.....++.+.+++++. ....++++|++|+
T Consensus 52 ~~~~~~~i~l~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~ 128 (432)
T 3ei9_A 52 KYPDAQVISLGIGD---TTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGA 128 (432)
T ss_dssp HCTTCCCEECSSCC---CCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCH
T ss_pred cCCCCCeEEccCCC---CCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCCh
Confidence 34688999998883 223479999999999987543211111 1123344567777776641 3466799999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhH
Q 013204 105 SEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184 (447)
Q Consensus 105 seA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (447)
++++..+..++ .+++.|++.++.|++.............+.. .......+..+++.....+
T Consensus 129 ~~al~~l~~l~---------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~--------- 189 (432)
T 3ei9_A 129 KCDISRLQVMF---------GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNT-DVQKYGNIEYMRCTPENGF--------- 189 (432)
T ss_dssp HHHHHHHHHHH---------CTTCCEEEEESCCTHHHHHHHHHTCSCCEET-TTTEETTCEEEECCGGGTT---------
T ss_pred HHHHHHHHHHc---------CCCCEEEEeCCCCHHHHHHHHHcCCcccccc-cccccCceEEeccCcccCC---------
Confidence 99998743333 3457899999999998655544332111000 0000001112222110000
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccC-C
Q 013204 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKY-S 263 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~-~ 263 (447)
..++++ .+ ++++|+++..++.+| .+++.+.+++|+++|++||+++|+||+|+++...+.......+ +
T Consensus 190 -----~~~l~~-----~~-~~~~v~l~~p~NPtG-~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~ 257 (432)
T 3ei9_A 190 -----FPDLST-----VG-RTDIIFFCSPNNPTG-AAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPG 257 (432)
T ss_dssp -----SCCGGG-----CC-CCSEEEEESSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTT
T ss_pred -----cCChhh-----CC-CCCEEEEeCCCCCCC-CCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCC
Confidence 011221 12 334444444455555 4557888999999999999999999999987554433322222 1
Q ss_pred C---CCCeeeecccCCCcccceeEEEeChhH--------HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh---
Q 013204 264 I---KPDLVSFAKALSSAYMPIGAILVSPEV--------SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--- 329 (447)
Q Consensus 264 ~---~~d~v~~sK~l~gg~~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--- 329 (447)
. ...+.++||.++.+++++|++++++++ ++.+... ....+++.+++++.++.+++....
T Consensus 258 ~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~ 330 (432)
T 3ei9_A 258 AEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRI-------ICTCFNGASNISQAGALACLTPEGLEA 330 (432)
T ss_dssp GGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHH-------HHHSCCCSCHHHHHHHHHHSSHHHHHH
T ss_pred CCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHH-------hccccCCCCHHHHHHHHHHHhcccHHH
Confidence 1 122447899997433899999999887 5655421 122345578888888888774211
Q ss_pred hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEee---
Q 013204 330 ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVS--- 405 (447)
Q Consensus 330 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~--- 405 (447)
-++..++++++.+++++.|+++ +..+. ....+.++.+.+.... ...+...|++ .||++.++
T Consensus 331 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~~~~------------~~~~~~~ll~~~gv~v~~g~~f 395 (432)
T 3ei9_A 331 MHKVIGFYKENTNIIIDTFTSL-GYDVY--GGKNAPYVWVHFPNQS------------SWDVFAEILEKTHVVTTPGSGF 395 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCEE--ECSSSSEEEEECTTSC------------HHHHHHHHHHHHCEECEEGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-Cceec--CCCcceEEEEECCCCC------------HHHHHHHHHHHCCEEEeCchHh
Confidence 2445677788888888888776 22221 1124566667665211 3456677665 59999874
Q ss_pred ----CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 406 ----GDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 406 ----g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
.+.+|++ +..++++|++++++|++.-
T Consensus 396 ~~~~~~~iRis--~~~~~e~l~~~l~rl~~~~ 425 (432)
T 3ei9_A 396 GPGGEGFVRVS--AFGHRENILEACRRFKQLY 425 (432)
T ss_dssp CGGGTTEEEEE--CCSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEE--ecCCHHHHHHHHHHHHHHh
Confidence 2679999 6789999999999998653
No 107
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.94 E-value=5e-25 Score=217.14 Aligned_cols=343 Identities=9% Similarity=0.032 Sum_probs=214.5
Q ss_pred CCEEEecCCcccc---ccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCC---eEEEeCChh
Q 013204 32 GKKYLDSLAGLWC---TALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMA---KVFFTNSGS 105 (447)
Q Consensus 32 g~~~lD~~~~~~~---~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~v~~~~sGs 105 (447)
|+.++||..|... ..+. .+|.+.+++.+........+....+..+....+++.+.... +++ ++++++||+
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~---~~~~~~~i~~t~g~~ 112 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLV-FLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNF---RPEGHIRSIATAGGT 112 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBC-CCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGG---CCSSEEEEEEESHHH
T ss_pred CCCeEECCCCcccCCCCCcc-ccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhccc---CccccccEEECCchH
Confidence 5578888777321 1222 56777777655333211111111223333444444443332 345 999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC-CcccCCCCCCChhH
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP-HYWRYAHPGETEEE 184 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 184 (447)
+|+..+++.+. .+++.|++.+++|+++.......+.... .+++. ..+. .
T Consensus 113 ~al~~~~~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~-------------~v~~~~~~~~-----~---- 162 (418)
T 3rq1_A 113 GGIHHLIHNYT--------EPGDEVLTADWYWGAYRVICSDTGRTLV-------------TYSLFDEHNN-----F---- 162 (418)
T ss_dssp HHHHHHHHHHS--------CTTCEEEEESSCCTHHHHHHHHTTCEEE-------------EECSBCTTSS-----B----
T ss_pred HHHHHHHHHhc--------CCCCEEEECCCCchhHHHHHHHcCCEEE-------------EEeeeCCCCC-----c----
Confidence 99999999763 3357899999999988765544332211 11110 0000 0
Q ss_pred HHHHHHHHHHHHHHhh-CCCcEEEEEEc-cccCCCCCccCChhHHHHHHHHHH------hcCCEEEEehhhcCCCcccc-
Q 013204 185 YSTRLANNLEDLILKE-GPETIAAFIAE-PVIGAGGVIPPPATYFEKVQAVVK------KYDILFIADEVICAFGRLGT- 255 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~-~~~~~a~vi~e-pv~~~~G~~~~~~~~l~~l~~l~~------~~g~~li~DEv~~g~g~~g~- 255 (447)
+++++++.+... .++..++++++ |.++.+|. .++.+.+++|+++|+ +||+++|+||+|.+|++.|.
T Consensus 163 ----d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~ 237 (418)
T 3rq1_A 163 ----NHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGY-SIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDE 237 (418)
T ss_dssp ----CHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHH
T ss_pred ----CHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHH
Confidence 137777777542 11344455555 52566664 457778999999999 89999999999999987764
Q ss_pred --ccccccCCCCCC---ee--eecccCCCcccceeEEEe---ChhHHHHhhhccCCCCccCcCC-CCCCcHHHHHHHHHH
Q 013204 256 --MFGCDKYSIKPD---LV--SFAKALSSAYMPIGAILV---SPEVSEVIHSQSNTLGSFSHGF-TYSGHPVSCAVAIEA 324 (447)
Q Consensus 256 --~~~~~~~~~~~d---~v--~~sK~l~gg~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~-t~~~~~~~~~aa~a~ 324 (447)
.+.....++.++ ++ ++||.++.+++|+|++++ ++++++.+.... ...... ....+.+++.++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~ 313 (418)
T 3rq1_A 238 VRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVN----KSTSRATWSNICRPAMRTMANI 313 (418)
T ss_dssp HHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHH----HHHHHHHTSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHH----HHHHhhccCCCchHHHHHHHHH
Confidence 222334455666 32 689999854489999998 899888876321 000111 234677787777777
Q ss_pred HHHHh--------hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHHHHHHHH
Q 013204 325 LKIYK--------ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGAYFGAQC 395 (447)
Q Consensus 325 l~~~~--------~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (447)
++... ..++.+.++++.+.+.+.|+++ +..+. .+.+ .++.+.+.+ ...+.+.|
T Consensus 314 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~---~~~~~~~~~~~~~~--------------~~~~~~~l 375 (418)
T 3rq1_A 314 VADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLPML---PYRGGFFITIPTDS--------------ANAICEEL 375 (418)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCC---CCCSSSEEEEECTT--------------HHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC---CCCceEEEEcCCCC--------------HHHHHHHH
Confidence 64221 1234566777777788888776 33322 2233 333343321 34577889
Q ss_pred HHcCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 396 EKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 396 ~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.++||++.++++.+|++.. .+++++|++++++|+++++++
T Consensus 376 ~~~gi~v~~g~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 376 KKEHIYVIALANGIRIAAC-GIPKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp HHTTEECEECSSEEEEEGG-GSCHHHHTTHHHHHHHHHHHT
T ss_pred HhCCEEEecCCCCeEEEEe-cCCHHHHHHHHHHHHHHHHHH
Confidence 9999999998889999943 369999999999999998764
No 108
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.93 E-value=4.8e-25 Score=216.94 Aligned_cols=345 Identities=12% Similarity=0.028 Sum_probs=212.3
Q ss_pred CCEEEecCCccccccCCC--CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 32 GKKYLDSLAGLWCTALGG--SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
|+.++||..+.....-|+ .+|.+.+++.+........+....+..+...++++++.....+...+++++++||++|+.
T Consensus 36 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~ 115 (413)
T 3t18_A 36 REAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYAPIEGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIR 115 (413)
T ss_dssp GGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHH
T ss_pred ccceEeccccCccCCCCCcCChHHHHHHHHhcCcccccCcCCCCCCHHHHHHHHHHHhcccCccccCcEEEcCccHHHHH
Confidence 567899987743222222 466777776653321111122112334445555555544432223349999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC-CcccCCCCCCChhHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP-HYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 188 (447)
.+++.+. ..++.|++.+++|+++.......+.... .+++. ..+. .
T Consensus 116 ~~~~~~~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~-------------~~~~~~~~~~-----~-------- 161 (413)
T 3t18_A 116 SAIFSYL--------DEGDPLICHDYYWAPYRKICEEFGRNFK-------------TFEFFTDDFA-----F-------- 161 (413)
T ss_dssp HHHHHHC--------CSSCEEEEESSCCTHHHHHHHHHTCEEE-------------EECCBCTTSS-----B--------
T ss_pred HHHHHhc--------CCCCEEEECCCCcccHHHHHHHhCCeEE-------------EeeccCCCCC-----c--------
Confidence 9999763 3357899999999887655443332211 11110 0000 0
Q ss_pred HHHHHHHHHHhh-CCCcEEEEEEccc-cCCCCCccCChhHHHHHHHHHH------hcCCEEEEehhhcCCCcccccc---
Q 013204 189 LANNLEDLILKE-GPETIAAFIAEPV-IGAGGVIPPPATYFEKVQAVVK------KYDILFIADEVICAFGRLGTMF--- 257 (447)
Q Consensus 189 ~~~~le~~l~~~-~~~~~a~vi~epv-~~~~G~~~~~~~~l~~l~~l~~------~~g~~li~DEv~~g~g~~g~~~--- 257 (447)
++++|++.+... .++..+++++++. ++.+|. ..+.+.+++|+++|+ +||+++|+||+|.+|++.|...
T Consensus 162 d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~ 240 (413)
T 3t18_A 162 NIDVYKEAIDEGIRDSDRIASLINSPGNNPTGY-SLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKF 240 (413)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGG
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHH
Confidence 136777777532 1134446666644 666664 456778999999999 8999999999999998877522
Q ss_pred ccccCCCCCCe--e---eecccCCCcccceeEEEe---ChhHHHHhhhccCCCCccCc-CCCCCCcHHHHHHHHHHHHHH
Q 013204 258 GCDKYSIKPDL--V---SFAKALSSAYMPIGAILV---SPEVSEVIHSQSNTLGSFSH-GFTYSGHPVSCAVAIEALKIY 328 (447)
Q Consensus 258 ~~~~~~~~~d~--v---~~sK~l~gg~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~~aa~a~l~~~ 328 (447)
.....++.++. + ++||.++.+++|+|++++ ++++++.+.... .... +.....+++++.++.++++..
T Consensus 241 ~~~~~~~~~~~~~i~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~l~~~ 316 (413)
T 3t18_A 241 FEKFSNLPRNLFVVVAFSMSKSHTAYGLRSGAAVGISSSKEIIEEFEASL----AHSARCNWSNGTHAAQNILIELERAE 316 (413)
T ss_dssp GGGGTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEEESCHHHHHHHHHHH----HHHHHHHTSSCCHHHHHHHHHTTSHH
T ss_pred HHHHhhcCCCeeEEEEEecCccCCCcCcCcEEEEEecCCHHHHHHHHHHH----HHhhhccccCCChHHHHHHHHHhcCh
Confidence 22333455563 2 689999844489999998 899988876321 0001 112346777877777766432
Q ss_pred h-------hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeee-EEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 329 K-------ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 329 ~-------~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
. .+++.+.++++.+.+.+.|+++ +..+ ..+.+. ++.+.+.+ ...+.+.|.++||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~---~~~~~~~~~~~~~~~--------------~~~~~~~l~~~gv 378 (413)
T 3t18_A 317 NKKIYEQELVDLRNMLKSRADVFVTAAKEN-KLTM---IPYFGGFFTFIPTDK--------------AFDIVKDLEKENI 378 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCC---BCCCSSSCEEEECSC--------------HHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCc---cCCCceEEEEeCCCC--------------HHHHHHHHHhCCE
Confidence 1 1234566777777777777765 3222 223333 33333311 4457788999999
Q ss_pred eEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 401 LVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 401 ~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
++.++++.+|++++. .+++++ +++|.+++++++
T Consensus 379 ~v~~g~~~iRis~~~-~~~~~~---l~~l~~~l~~~~ 411 (413)
T 3t18_A 379 FTIPSAKGIRVAICG-VGEEKI---PKLVQRLAFYTN 411 (413)
T ss_dssp ECEECSSEEEECTTT-SCGGGH---HHHHHHHHHHHH
T ss_pred EEecCCCceEEEEee-CCHHHH---HHHHHHHHHHHh
Confidence 999988899999773 455555 888888887764
No 109
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.93 E-value=3.8e-24 Score=210.71 Aligned_cols=350 Identities=11% Similarity=0.043 Sum_probs=215.8
Q ss_pred CCEEEecCCccccc-cCCCCCHHHHHHHHHHHhcCCc-ccccCcCCChHHHHHHHHHHHhcC-----------cCCCCeE
Q 013204 32 GKKYLDSLAGLWCT-ALGGSEPRLVAAATAQLNTLPF-YHSFWNRTTKPSLDLAKELLEMFT-----------ASKMAKV 98 (447)
Q Consensus 32 g~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~-----------~~~~~~v 98 (447)
.+.++||..+.... +-.+.+|++.+++.+++.+... .+. +.....++.+.+++++. +.+.+++
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~----~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v 107 (416)
T 1bw0_A 32 PKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYF----PTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNV 107 (416)
T ss_dssp CSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCC----CTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGE
T ss_pred CCCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcC----CCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceE
Confidence 35789998775432 1124789999999999875321 111 11223445555555442 1356799
Q ss_pred EEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCC
Q 013204 99 FFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHP 178 (447)
Q Consensus 99 ~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (447)
++++||++|++.+++.+. .++++|++.+++||+........ |.... .++....
T Consensus 108 ~~~~g~~~al~~~~~~l~--------~~gd~vl~~~p~y~~~~~~~~~~-g~~~~------------~v~~~~~------ 160 (416)
T 1bw0_A 108 VLCSGGSHGILMAITAIC--------DAGDYALVPQPGFPHYETVCKAY-GIGMH------------FYNCRPE------ 160 (416)
T ss_dssp EEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTHHHHHHHHT-TCEEE------------EEEEEGG------
T ss_pred EEeCChHHHHHHHHHHhC--------CCCCEEEEcCCCcHhHHHHHHHc-CcEEE------------EeecCcc------
Confidence 999999999999999773 23478999999999986544332 22111 1111000
Q ss_pred CCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc---
Q 013204 179 GETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT--- 255 (447)
Q Consensus 179 ~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~--- 255 (447)
+.+ ..++++|++.+. ++..++++++| ++.+|. ..+.+++++|.++|++||+++|+||+|+++.+.|.
T Consensus 161 ----~~~-~~d~~~l~~~l~---~~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~ 230 (416)
T 1bw0_A 161 ----NDW-EADLDEIRRLKD---DKTKLLIVTNP-SNPCGS-NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPN 230 (416)
T ss_dssp ----GTT-EECHHHHHHHCC---TTEEEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTT
T ss_pred ----cCC-CCCHHHHHHHhc---cCCeEEEEeCC-CCCCCc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Confidence 000 001366776664 23344556666 445554 46789999999999999999999999998866554
Q ss_pred -cc-ccccCCCCCCe---eeecccCCCcccceeEEEeChh--HHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH
Q 013204 256 -MF-GCDKYSIKPDL---VSFAKALSSAYMPIGAILVSPE--VSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY 328 (447)
Q Consensus 256 -~~-~~~~~~~~~d~---v~~sK~l~gg~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~ 328 (447)
.+ ....++..+++ .++||.++.+++++|+++++++ +++.+.... .. .+..+++.++++++++.++|+..
T Consensus 231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~a~~~~l~~~ 306 (416)
T 1bw0_A 231 ATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGL---KR-VGMLVCGPCTVVQAALGEALLNT 306 (416)
T ss_dssp CCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHH---HH-HHHHHTCSCHHHHHHHHHHHHSS
T ss_pred CCccCHHHccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHH---HH-HhccccCCCcHHHHHHHHHHhcc
Confidence 22 22222222222 2679998755589999998663 433332100 00 01125667889999888888732
Q ss_pred hh---hcHHHHHHHHHHHHHHhHhhccCCCceeeEee-eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH-HcCceEE
Q 013204 329 KE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG-TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE-KHGMLVR 403 (447)
Q Consensus 329 ~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~ 403 (447)
.. ++..++++++.+++.+.|+++ +.+..+.+ .|.++.+.+....... . .....+.+.|+ ++||.+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~l~~~~gi~v~ 377 (416)
T 1bw0_A 307 PQEHLDQIVAKIEESAMYLYNHIGEC---IGLAPTMPRGAMYLMSRIDLEKYRD-----I-KTDVEFFEKLLEEENVQVL 377 (416)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTS---TTEEECCCCBTTEEEEEECGGGBSS-----C-CSHHHHHHHHHHHHCEECE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhC---CCCcccCCCeeEEEEEeCCHHHcCC-----C-CCHHHHHHHHHHHCCEEEe
Confidence 11 334566677777777777654 22333323 3556666664321000 0 01345777774 8899998
Q ss_pred eeC-----CEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 404 VSG-----DNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 404 ~~g-----~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
++. +.+|+++ ..++++|++++++|.+++++.+
T Consensus 378 ~g~~f~~~~~iRis~--~~~~e~l~~~l~~l~~~l~~~~ 414 (416)
T 1bw0_A 378 PGTIFHAPGFTRLTT--TRPVEVYREAVERIKAFCQRHA 414 (416)
T ss_dssp EGGGGTCTTEEEEEC--CSCHHHHHHHHHHHHHHHHHHB
T ss_pred cccccCCCCeEEEEe--cCCHHHHHHHHHHHHHHHHHhh
Confidence 752 5799996 5789999999999999987643
No 110
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.93 E-value=8.3e-25 Score=214.32 Aligned_cols=337 Identities=11% Similarity=0.057 Sum_probs=212.3
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCc-CCChHHHHHHHHHHHhcC-c-CCCCeEEEeCChhhH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWN-RTTKPSLDLAKELLEMFT-A-SKMAKVFFTNSGSEA 107 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~-~-~~~~~v~~~~sGseA 107 (447)
.|++++||.++.. .++ .+|.+.+++.+++++......... .+.....++.+.+++++. + ...+++++++|++++
T Consensus 31 ~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~a 107 (400)
T 3asa_A 31 PQHTVINLSIGDT--TQP-LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVD 107 (400)
T ss_dssp TTSCCEECSSCCC--CCC-CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHH
T ss_pred CCCceEeccCCCC--CCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHH
Confidence 4778999987752 344 689999999998865321101111 123345678888888741 2 356799999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 108 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 108 ~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
++.+++++ .++++|++.+++|++........ |... +..++......+.
T Consensus 108 l~~~~~~~---------~~gd~Vl~~~p~y~~~~~~~~~~-g~~~-----------~~~~~~~~~~~~~----------- 155 (400)
T 3asa_A 108 LFRLLSFF---------GPNQTVAIQDPSYPAYLDIARLT-GAKE-----------IIALPCLQENAFF----------- 155 (400)
T ss_dssp HHHHHHHH---------CSSCEEEEEESCCHHHHHHHHHT-TCSE-----------EEEEECCGGGTTC-----------
T ss_pred HHHHHHHc---------CCCCEEEECCCCcHHHHHHHHHc-CCcc-----------eEecccchhcCcc-----------
Confidence 99876543 23478999999999986443332 2210 0111111100000
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc-ccccccCCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT-MFGCDKYSIKP 266 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~-~~~~~~~~~~~ 266 (447)
.++++ . +++++|++++.++.+|.+ ++.+.+++|.++|++||+++|+||+|++++..|. ......++..+
T Consensus 156 ---~~l~~----~--~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 225 (400)
T 3asa_A 156 ---PEFPE----D--THIDILCLCSPNNPTGTV-LNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDAR 225 (400)
T ss_dssp ---CCCCT----T--CCCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGG
T ss_pred ---cChhh----c--cCccEEEEeCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCC
Confidence 01111 0 234556655556666654 5789999999999999999999999998866553 22222222113
Q ss_pred C----eeeecccCCCcccceeEEEeChhH-------HHHhhhccCCCCccCcCCCC-CCcHHHHHHHHHHHHHHhhhcHH
Q 013204 267 D----LVSFAKALSSAYMPIGAILVSPEV-------SEVIHSQSNTLGSFSHGFTY-SGHPVSCAVAIEALKIYKERNIV 334 (447)
Q Consensus 267 d----~v~~sK~l~gg~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~t~-~~~~~~~~aa~a~l~~~~~~~~~ 334 (447)
| +.++||.++.+++|+|++++++++ ++.+... ....++ +.+++++.++.++|+....++..
T Consensus 226 ~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 298 (400)
T 3asa_A 226 FCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWER-------FLSTTFNGASIPAQEAGVAGLSILPQLEAI 298 (400)
T ss_dssp GTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHH-------HHHHHCCCCCHHHHHHHHHHHHHTTTCHHH
T ss_pred CceEEEecchhhcCCcchheeEEeeChhhccchhhhHHHHHHH-------HhccCccCCChHHHHHHHHHhCcHHHHHHH
Confidence 3 447899997333899999999887 5544311 111233 56888888888888754335567
Q ss_pred HHHHHHHHHHHHhHhhccCCCceeeEee-eeeEEEEE-eecCCCCCCCCCCCcchHHHHHHHHHH-cCceEEee------
Q 013204 335 EQVNKIAPKFQDGVKAFSDSPIIGEIRG-TGLILGTE-FADNKSPNEPFPPEWGIGAYFGAQCEK-HGMLVRVS------ 405 (447)
Q Consensus 335 ~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~------ 405 (447)
++++++.+++++.|+++ + + ....+ .|.++.+. +..... ...+.+.|++ +||++.++
T Consensus 299 ~~~~~~~~~l~~~L~~~-g--~-~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~gv~v~~g~~f~~~ 363 (400)
T 3asa_A 299 HYYRENSDLLRKALLAT-G--F-EVFGGEHAPYLWVKPTQANIS-----------DRDLFDFFLREYHIAITPGIGFGRS 363 (400)
T ss_dssp HHHHHHHHHHHHHHHHT-T--C-EEEECSSSSEEEEECCCTTCC-----------TTTHHHHHHHHHSEECEEGGGGCGG
T ss_pred HHHHHHHHHHHHHHHHC-C--C-eeeCCCCceEEEEeccCCCCC-----------HHHHHHHHHHhCCEEEeChhHhCCC
Confidence 88888888998888875 2 2 22233 35666777 543211 1126666764 59999875
Q ss_pred -CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 406 -GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 406 -g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+.+|++ +..++++|++++++|++++++.
T Consensus 364 ~~~~iRis--~~~~~e~i~~~l~~l~~~~~~~ 393 (400)
T 3asa_A 364 GSGFVRFS--SLGKREDILAACERLQMAPALQ 393 (400)
T ss_dssp GTTCEEEE--CCSCHHHHHHHHHHHHC-----
T ss_pred CCCEEEEE--eeCCHHHHHHHHHHHHHHHHhh
Confidence 2569999 6789999999999999988654
No 111
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.93 E-value=2.4e-24 Score=210.37 Aligned_cols=331 Identities=13% Similarity=0.104 Sum_probs=222.2
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCC-eEEEeCChhhHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMA-KVFFTNSGSEAND 109 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~v~~~~sGseA~~ 109 (447)
+++.|+|..+. ++.+|++.+++.+.+.. .+.. ...+...++++++++.+. .+.+ ++++++||++|++
T Consensus 32 ~~~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~~~---~~~~~~~~~~~~la~~~g-~~~~~~v~~t~g~t~al~ 99 (393)
T 1vjo_A 32 VPSRLLLGPGP------SNAHPSVLQAMNVSPVG--HLDP---AFLALMDEIQSLLRYVWQ-TENPLTIAVSGTGTAAME 99 (393)
T ss_dssp CCCCEECSSSC------CCCCHHHHHHHSSCCCC--TTSH---HHHHHHHHHHHHHHHHHT-CCCSCEEEESSCHHHHHH
T ss_pred CccceeccCCC------CCCCHHHHHHHhccccc--ccCH---HHHHHHHHHHHHHHHHhC-CCCCcEEEEeCchHHHHH
Confidence 45678886433 35789999988876643 1110 123456778888888764 3556 8999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCcc--chhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHG--STLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
.+++.+. .++++|++.+++||+ ....... .|... ..++.+..+.
T Consensus 100 ~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~-~g~~~------------~~v~~~~~~~------------- 145 (393)
T 1vjo_A 100 ATIANAV--------EPGDVVLIGVAGYFGNRLVDMAGR-YGADV------------RTISKPWGEV------------- 145 (393)
T ss_dssp HHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHH-TTCEE------------EEEECCTTCC-------------
T ss_pred HHHHhcc--------CCCCEEEEEcCChhHHHHHHHHHH-cCCce------------EEEecCCCCC-------------
Confidence 9999873 335789999999998 3322221 22111 1122211100
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPD 267 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d 267 (447)
.++++|++.+... ++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|... .......+|
T Consensus 146 ~d~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~----~~~~~~~~d 213 (393)
T 1vjo_A 146 FSLEELRTALETH---RPAILALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP----IFLDAWGVD 213 (393)
T ss_dssp CCHHHHHHHHHHH---CCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC----CCTTTTTCS
T ss_pred CCHHHHHHHHhhC---CceEEEEeccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC----CcccccCcc
Confidence 0147788877642 3457888888888887765 8999999999999999999998 65432 222234578
Q ss_pred eeeec--ccCCCcccceeEEEeChhHHHHhhhccCCCCccC------------cCCCC-CCcHHHHHHHHHHHHHHhh--
Q 013204 268 LVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFS------------HGFTY-SGHPVSCAVAIEALKIYKE-- 330 (447)
Q Consensus 268 ~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~------------~~~t~-~~~~~~~~aa~a~l~~~~~-- 330 (447)
++++| |.+++++ ++|++++++++++.+.........+. ...++ +.++++++++.++++.+.+
T Consensus 214 i~~~s~sK~l~~~~-~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~ 292 (393)
T 1vjo_A 214 LAYSCSQKGLGCSP-GASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEG 292 (393)
T ss_dssp EEECCSSSTTCSCS-SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEcCcccccCCC-ceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 88755 9999885 99999999999888753210011111 02234 6788888888889987644
Q ss_pred -hcHHHHHHHHHHHHHHhHhhccCCCceeeEee--eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee-
Q 013204 331 -RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG--TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS- 405 (447)
Q Consensus 331 -~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~- 405 (447)
++..++++++.+++.+.|+++ +..+... .+ .+.++.+.++... ....+.+.|+++ ||.+.++
T Consensus 293 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~gi~v~~g~ 359 (393)
T 1vjo_A 293 LANCWQRHQKNVEYLWERLEDI-GLSLHVE-KEYRLPTLTTVCIPDGV-----------DGKAVARRLLNEHNIEVGGGL 359 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCBSSC-GGGBCSSEEEEECCTTC-----------CHHHHHHHHHHHHCEECEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCcccCC-ccccCCcEEEEEcCCCC-----------CHHHHHHHHHhhCCEEEecCc
Confidence 356778888889999998876 3333221 11 2344555553211 145688889888 9999875
Q ss_pred ----CCEEEEec-CCCCCHHHHHHHHHHHHHHH
Q 013204 406 ----GDNIMMSP-PFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 406 ----g~~iR~~~-~~~~t~e~i~~~~~~l~~~l 433 (447)
.+.+|+++ ++..+++++++++++|++++
T Consensus 360 ~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 360 GELAGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp GGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 26799995 56678889999999998875
No 112
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.93 E-value=6.5e-24 Score=206.89 Aligned_cols=341 Identities=16% Similarity=0.132 Sum_probs=213.3
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~ 109 (447)
+|+.++||..+. ..++ .+|.+.+++.+.++.....++...+..+....+++.+...+. ..+++++++++||++|+.
T Consensus 29 ~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~ 105 (385)
T 1b5p_A 29 QGVDLVALTAGE--PDFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF 105 (385)
T ss_dssp TTCCCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEecCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHH
Confidence 456788987764 2344 478999999988865322222212233444445555544332 135678999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
.+++.+. .++++|++.+++|+++....... |... ..++......+. .+
T Consensus 106 ~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~-g~~~------------~~v~~~~~~~~~-----------~d 153 (385)
T 1b5p_A 106 NLFQAIL--------DPGDEVIVLSPYWVSYPEMVRFA-GGVV------------VEVETLPEEGFV-----------PD 153 (385)
T ss_dssp HHHHHHC--------CTTCEEEEEESCCTHHHHHHHHT-TCEE------------EEEECCGGGTTC-----------CC
T ss_pred HHHHHhc--------CCCCEEEEcCCCchhHHHHHHHc-CCEE------------EEeecCcccCCC-----------CC
Confidence 9998763 33578999999998876444332 2111 111111000000 01
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV 269 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v 269 (447)
++++++.+. ++..++++++|.|++| ...+.+.+++|.++|++||+++|+||+|+.+...|....+..+.-..+++
T Consensus 154 ~~~l~~~l~---~~~~~v~~~~p~NPtG--~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~ 228 (385)
T 1b5p_A 154 PERVRRAIT---PRTKALVVNSPNNPTG--AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLT 228 (385)
T ss_dssp HHHHHTTCC---TTEEEEEEESSCTTTC--CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEE
T ss_pred HHHHHHhcC---CCCEEEEEeCCCCCCC--CCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEE
Confidence 366666553 2333445556655555 44578999999999999999999999999775444211222221111232
Q ss_pred --eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH---Hhh--hcHHHHHHHHHH
Q 013204 270 --SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI---YKE--RNIVEQVNKIAP 342 (447)
Q Consensus 270 --~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~---~~~--~~~~~~~~~~~~ 342 (447)
+|||.++.+++++|++++++++++.+... ....+++.+.+++.++.++|+. ..+ ++..++++++.+
T Consensus 229 ~~s~SK~~~~~G~RiG~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 301 (385)
T 1b5p_A 229 VNGAAKAFAMTGWRIGYACGPKEVIKAMASV-------SRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRD 301 (385)
T ss_dssp EEESTTTTTCGGGCCEEEECCHHHHHHHHHH-------HHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEechhhcCCcccceEEEEeCHHHHHHHHHH-------HhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence 68999885448999999999998887632 2224566778888888777753 211 345567777778
Q ss_pred HHHHhHhhccCCCceeeEeeee-eEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----CEEEEecCCC
Q 013204 343 KFQDGVKAFSDSPIIGEIRGTG-LILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----DNIMMSPPFI 416 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----~~iR~~~~~~ 416 (447)
++.+.|+++ +..+. ...+ .++.+.+.... . ....+.+.|+++||.+.++. +.+|++ +.
T Consensus 302 ~l~~~L~~~-g~~~~---~~~~~~~~~~~~~~~~-~---------~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis--~~ 365 (385)
T 1b5p_A 302 LLLEGLTAL-GLKAV---RPSGAFYVLMDTSPIA-P---------DEVRAAERLLEAGVAVVPGTDFAAFGHVRLS--YA 365 (385)
T ss_dssp HHHHHHHHH-TCCBC---CCSBTTEEEEECTTTC-S---------SHHHHHHHHHHTTEECEESGGGTCTTEEEEE--CC
T ss_pred HHHHHHHHC-CCeec---CCCeeEEEEEecCCCC-C---------CHHHHHHHHHHCCeEEecccccCCCCeEEEE--ec
Confidence 888888776 32221 2233 34444543111 0 14568888889999998752 579999 45
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 013204 417 MSPEEVDELISKYGKALK 434 (447)
Q Consensus 417 ~t~e~i~~~~~~l~~~l~ 434 (447)
+++++|++++++|+++++
T Consensus 366 ~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 366 TSEENLRKALERFARVLG 383 (385)
T ss_dssp SCHHHHHHHHHHGGGGC-
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 899999999999987764
No 113
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.93 E-value=3.2e-25 Score=214.80 Aligned_cols=330 Identities=13% Similarity=0.122 Sum_probs=220.2
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCC---c--ccccCcCCChHHHHHHHH-HHHhcCcCCCCeEEEeCChhh
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP---F--YHSFWNRTTKPSLDLAKE-LLEMFTASKMAKVFFTNSGSE 106 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~--~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~v~~~~sGse 106 (447)
-.|+|+.+ +.++.+|++.+++.+.+.... + .+.....+.+...+++++ +++++. .+ .+++++||++
T Consensus 9 ~i~ld~~~-----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~-~~--~v~~~~g~t~ 80 (371)
T 2e7j_A 9 FINIDPLQ-----TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLG-CD--VARVTNGARE 80 (371)
T ss_dssp CEECCHHH-----HTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTT-SS--EEEEESSHHH
T ss_pred cEEecccc-----cCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcC-CC--EEEEeCChHH
Confidence 45677632 345678999999999876532 1 111112355677889999 999873 22 8999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecC--CCCcccCCCCCCChhH
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTD--CPHYWRYAHPGETEEE 184 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 184 (447)
|++.+++.+. .++++|++.+++||+....... .|.. +..++ ....+. .
T Consensus 81 a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~-~g~~------------~~~v~~~~~~~~~-----~---- 130 (371)
T 2e7j_A 81 AKFAVMHSLA--------KKDAWVVMDENCHYSSYVAAER-AGLN------------IALVPKTDYPDYA-----I---- 130 (371)
T ss_dssp HHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHH-TTCE------------EEEECCCCTTTCC-----C----
T ss_pred HHHHHHHHHh--------CCCCEEEEccCcchHHHHHHHH-cCCe------------EEEeecccCCCCC-----c----
Confidence 9999999873 3457899999999988655332 2221 11122 111000 0
Q ss_pred HHHHHHHHHHHHHHhhCC-CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCC
Q 013204 185 YSTRLANNLEDLILKEGP-ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYS 263 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~-~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~ 263 (447)
++++|++.+..... +++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+.+ ..+ .....+
T Consensus 131 ----d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~-~~~--~~~~~~- 198 (371)
T 2e7j_A 131 ----TPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIG-RMP--VSLKEI- 198 (371)
T ss_dssp ----CHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBT-TBC--CCHHHH-
T ss_pred ----CHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccC-CCC--CChhhc-
Confidence 14778887764321 35778999999888888776 799999999999999999999843 332 122222
Q ss_pred CCCCeee--ecccCCCcccceeEEEeChhHHHH-hhhccCCCCccCcCC-----CCCCcHHHHHHHHHHHHHHhhhcHHH
Q 013204 264 IKPDLVS--FAKALSSAYMPIGAILVSPEVSEV-IHSQSNTLGSFSHGF-----TYSGHPVSCAVAIEALKIYKERNIVE 335 (447)
Q Consensus 264 ~~~d~v~--~sK~l~gg~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~-----t~~~~~~~~~aa~a~l~~~~~~~~~~ 335 (447)
.+|+++ ++|.++++ .++|++++++++++. +..... . ... +++.++..++++.++++.+.. ++.+
T Consensus 199 -~~di~~~s~sK~~~~~-~~~G~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~ 270 (371)
T 2e7j_A 199 -GADFIVGSGHKSMAAS-GPIGVMGMKEEWAEIVLRRSEK---Y--KNKEVELLGCTARGATIITLMASFPHVRE-RIKR 270 (371)
T ss_dssp -TCSEEEEEHHHHSSCC-SSCEEEEECTTTTTTTTCBCSS---C--TTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGG
T ss_pred -CCCEEEecCCcCCCCC-CCcEEEEEechhhhhhcccccc---C--cccccccccCCcCHHHHHHHHHHHHHHHH-HHHH
Confidence 367765 58999988 599999999988776 642110 0 011 455677778878788887655 5667
Q ss_pred HH--HHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe--------e
Q 013204 336 QV--NKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV--------S 405 (447)
Q Consensus 336 ~~--~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~--------~ 405 (447)
++ +++.+++++.|+++ +..+.....+.+.++.+.+. . ...+.+.|.++||.+.+ +
T Consensus 271 ~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~l~~~gi~~~~~~~~~~~~g 335 (371)
T 2e7j_A 271 WDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAE--V------------LYEISKKAKGGRFFLYRELKSRKIHG 335 (371)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECH--H------------HHHHHHHSSSGGGHHHHHHHHTTEEC
T ss_pred HHHHHHHHHHHHHHHHHc-CcEEecCCCccCceEEEECC--C------------HHHHHHHHHHCCEEEEeccccccccC
Confidence 77 88888888888876 33222211113566677664 1 34577888888988765 1
Q ss_pred --CCEEE-EecCCC-CCHHHHHHHHHHHHHHHHH
Q 013204 406 --GDNIM-MSPPFI-MSPEEVDELISKYGKALKA 435 (447)
Q Consensus 406 --g~~iR-~~~~~~-~t~e~i~~~~~~l~~~l~~ 435 (447)
.+.+| ++++.. ++++++++++++|++++++
T Consensus 336 ~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 336 IKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp SCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence 35689 998877 8999999999999998865
No 114
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.93 E-value=6.9e-24 Score=206.26 Aligned_cols=322 Identities=15% Similarity=0.113 Sum_probs=216.6
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCC--CeEEEeCChhhHHHHHHHHHHHHHHhcCCCCc
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKM--AKVFFTNSGSEANDTQVKLVWYYNNALGRPNK 127 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~ 127 (447)
.+|++++++.+++.... . ....+...++++++++.+. .+. +++++++||++|++ +++.+. .++
T Consensus 13 ~~~~v~~a~~~~~~~~~-~----~~~~~~~~~~~~~la~~~~-~~~~~~~v~~~~g~t~al~-~~~~~~--------~~g 77 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGFT-S----KEFVEALAYSLKGLRYVMG-ASKNYQPLIIPGGGTSAME-SVTSLL--------KPN 77 (384)
T ss_dssp CCHHHHHHTTCCSCCTT-S----HHHHHHHHHHHHHHHHHHT-CCTTSEEEEEESCHHHHHH-HGGGGC--------CTT
T ss_pred CCHHHHHHhhccccccc-c----HHHHHHHHHHHHHHHHHhC-CCCCCcEEEEcCCcHHHHH-HHHhhc--------CCC
Confidence 57888888776553211 0 1124556778888888874 344 78999999999999 887553 345
Q ss_pred ceEEEEcCCCccchhhhh-cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEE
Q 013204 128 KKFIARQKSYHGSTLIAA-SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIA 206 (447)
Q Consensus 128 ~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a 206 (447)
++|++.++.||+.....+ ...|.. +..++.+..+. .+++++++.+.. .+++
T Consensus 78 d~vi~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~-------------~d~~~l~~~i~~---~~~~ 129 (384)
T 3zrp_A 78 DKILVVSNGVFGDRWEQIFKRYPVN------------VKVLRPSPGDY-------------VKPGEVEEEVRK---SEYK 129 (384)
T ss_dssp CEEEEECSSHHHHHHHHHHTTSSCE------------EEEECCSTTCC-------------CCHHHHHHHHHH---SCEE
T ss_pred CEEEEecCCcchHHHHHHHHHcCCc------------EEEecCCCCCC-------------CCHHHHHHHHHh---CCCc
Confidence 789999999998643332 222221 11222211110 014778888864 2478
Q ss_pred EEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcccceeE
Q 013204 207 AFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGA 284 (447)
Q Consensus 207 ~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~ 284 (447)
+|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ ++.. .... ....+|++++| |.++++ .++|+
T Consensus 130 ~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~--~~~~--~~~~~d~~~~s~~K~~~~~-~g~g~ 199 (384)
T 3zrp_A 130 LVALTHVETSTGVREP----VKDVINKIRKYVELIVVDGVSS-VGAE--EVKA--EEWNVDVYLTASQKALGSA-AGLGL 199 (384)
T ss_dssp EEEEESEETTTTEECC----HHHHHHHHGGGEEEEEEECTTT-TTTS--CCCT--TTTTCSEEEEETTSTTCCC-SSEEE
T ss_pred EEEEeCCCCCCceECc----HHHHHHHHHhcCCEEEEECccc-ccCc--cccc--cccCCCEEEecCcccccCC-CceEE
Confidence 8899998888887776 9999999999999999999997 3322 1111 22346877655 999876 68999
Q ss_pred EEeChhHHHHh-hhccCCC------------CccC--cCCCC-CCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHH
Q 013204 285 ILVSPEVSEVI-HSQSNTL------------GSFS--HGFTY-SGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQ 345 (447)
Q Consensus 285 ~~~~~~~~~~~-~~~~~~~------------~~~~--~~~t~-~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~ 345 (447)
+++++++++.+ ....... ..+. ....+ +.++.++++..++++.+.. ++..++++++.+++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~ 279 (384)
T 3zrp_A 200 LLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIR 279 (384)
T ss_dssp EEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 99999988776 2100000 0000 11223 4566677777777776654 356778888888999
Q ss_pred HhHhhccCCCceeeE--eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC----CEEEEecCCCCCH
Q 013204 346 DGVKAFSDSPIIGEI--RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG----DNIMMSPPFIMSP 419 (447)
Q Consensus 346 ~~L~~l~~~~~~~~~--~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g----~~iR~~~~~~~t~ 419 (447)
+.|+++ +..+.... ...+.++.+.+... ....+.+.|.++||.+.++. +.+|++++..+++
T Consensus 280 ~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~ 346 (384)
T 3zrp_A 280 AGLEAL-GLEIVARRPESYSNTVTGVILKVA------------DPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTP 346 (384)
T ss_dssp HHHHHT-TCCBSCSSGGGBCSSEEEEECSSS------------CHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCH
T ss_pred HHHHHC-CCeEccCcccccCccEEEEECCCC------------CHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCH
Confidence 988876 33322211 12345556665431 14568899999999999876 7799999988999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKALKATE 437 (447)
Q Consensus 420 e~i~~~~~~l~~~l~~~~ 437 (447)
+++++++++|++++++++
T Consensus 347 e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 347 NDAIIAISVIERTLRKLG 364 (384)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 999999999999998764
No 115
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.93 E-value=2.7e-25 Score=217.28 Aligned_cols=339 Identities=11% Similarity=0.046 Sum_probs=214.0
Q ss_pred CCCEEEecCCccccccCC--CCCHHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcCcC--CCCeEEE--eCC
Q 013204 31 NGKKYLDSLAGLWCTALG--GSEPRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFTAS--KMAKVFF--TNS 103 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~v~~--~~s 103 (447)
.+..++||+++...++.+ +.+|.+.+++.+.+++.. ..+. +.....++.+.+++++... ..++++| ++|
T Consensus 24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~----~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g 99 (394)
T 2ay1_A 24 PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYA----GLSGEPEFQKAMGELILGDGLKSETTATLATVG 99 (394)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCC----CSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEH
T ss_pred CCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCC----CCCCcHHHHHHHHHHHhCCCCCcccEEEEecCC
Confidence 466789999886544445 568999999998876421 1111 2223456666666664222 5678999 999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC--CcccCCCCCCC
Q 013204 104 GSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP--HYWRYAHPGET 181 (447)
Q Consensus 104 GseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 181 (447)
|++|++.++++++.. .++++|++.+++||++.......+.... .++.. +.+.
T Consensus 100 ~~~a~~~~~~~~~~~------~~gd~vl~~~p~~~~~~~~~~~~g~~~~-------------~~~~~~~~~~~------- 153 (394)
T 2ay1_A 100 GTGALRQALELARMA------NPDLRVFVSDPTWPNHVSIMNFMGLPVQ-------------TYRYFDAETRG------- 153 (394)
T ss_dssp HHHHHHHHHHHHHHH------CTTCCEEEEESCCHHHHHHHHHHTCCEE-------------EEECEETTTTE-------
T ss_pred chhHHHHHHHHHHhc------CCCCEEEEcCCCChhHHHHHHHcCCceE-------------EEecccccCCc-------
Confidence 999999999987543 2346899999999998765544332211 11110 0000
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccc--ccccc
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG--TMFGC 259 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g--~~~~~ 259 (447)
.+++++++.+.... ..++++++++.++.+|. .++.+++++|.++|++||+++|+||+|+++++.| .....
T Consensus 154 ------~d~~~l~~~l~~~~-~~~~~~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 225 (394)
T 2ay1_A 154 ------VDFEGMKADLAAAK-KGDMVLLHGCCHNPTGA-NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGT 225 (394)
T ss_dssp ------ECHHHHHHHHHTCC-TTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHH
T ss_pred ------cCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHH
Confidence 01377888776432 23556666666666664 5678999999999999999999999999887653 11122
Q ss_pred ccC-CCCCCee---eecccCCCcccceeEEEe---ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH----
Q 013204 260 DKY-SIKPDLV---SFAKALSSAYMPIGAILV---SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY---- 328 (447)
Q Consensus 260 ~~~-~~~~d~v---~~sK~l~gg~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~---- 328 (447)
..+ ...++++ ++||.++.+++|+|++++ ++++++.+...- .......+...++++++++.++|+..
T Consensus 226 ~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~ 302 (394)
T 2ay1_A 226 RLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAM---AFLNRQTYSFPPFHGAKIVSTVLTTPELRA 302 (394)
T ss_dssp HHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHH---HHHHHTTTSSCCCHHHHHHHHHHHSHHHHH
T ss_pred HHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHH---HHHHhhhcCCCChHHHHHHHHHhcChHHHH
Confidence 211 1224433 689999833389999998 676544432100 00011122234788888888887643
Q ss_pred ----hhhcHHHHHHHHHHHHHHhHhhcc---CCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 329 ----KERNIVEQVNKIAPKFQDGVKAFS---DSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 329 ----~~~~~~~~~~~~~~~l~~~L~~l~---~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
..++..++++++.+++.+.|+++. .... ..+. |.++.+.+. ...+.+.+.++||
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~---~~~~~g~~~~~~~~---------------~~~~~~~l~~~gi 364 (394)
T 2ay1_A 303 DWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGF---VAEHRGMFSRLGAT---------------PEQVKRIKEEFGI 364 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTH---HHHCCSSEEECCCC---------------HHHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeE---EcCCceEEEeeCCC---------------HHHHHHHHHhCCE
Confidence 123456677777788888887662 1221 1222 444444332 1246667778999
Q ss_pred eEEeeCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 401 LVRVSGDNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 401 ~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
++.++ +|++++ .++++++++++++|+++
T Consensus 365 ~v~~~---~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 365 YMVGD---SRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp ECCTT---CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred EecCC---CeEEee-cCCHhhHHHHHHHHHHc
Confidence 98763 699977 47999999999999875
No 116
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.93 E-value=6.6e-24 Score=208.88 Aligned_cols=337 Identities=16% Similarity=0.145 Sum_probs=224.0
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCccccc--C--cCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSF--W--NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSE 106 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~--~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGse 106 (447)
+|..|+|+.+. |+.+|++.+++.+++.+....+.. . ....+...++++++++.+. .+.++++|++||++
T Consensus 27 ~~~~yld~~~~------~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~~~v~~~~g~t~ 99 (416)
T 1qz9_A 27 EGVIYLDGNSL------GARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIG-ARDGEVVVTDTTSI 99 (416)
T ss_dssp TTCEECCTTTS------CCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTT-CCTTSEEECSCHHH
T ss_pred CCeEeecCCCc------CCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcC-CCcccEEEeCChhH
Confidence 57899998533 568899999999998753111110 0 0123566789999998873 35578999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhc-c---c--CCccccCCCCCCCCcceecCCCCcccCCCCCC
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAAS-L---S--GLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~-~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (447)
+++.+++.++..... +.++ +++|++++.+|+....++. . . |.. +..++.
T Consensus 100 al~~al~~~~~~~~~-~~~g-d~vii~~~~~~~~~~~~~~~~~~~~~~g~~------------~~~v~~----------- 154 (416)
T 1qz9_A 100 NLFKVLSAALRVQAT-RSPE-RRVIVTETSNFPTDLYIAEGLADMLQQGYT------------LRLVDS----------- 154 (416)
T ss_dssp HHHHHHHHHHHHHHH-HSTT-CCEEEEETTSCHHHHHHHHHHHHHHCSSCE------------EEEESS-----------
T ss_pred HHHHHHHhhcccccc-cCCC-CcEEEEcCCCCCchHHHHHHHHHHhcCCce------------EEEeCc-----------
Confidence 999999876422100 0133 4567778888886443321 1 0 111 111221
Q ss_pred ChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccc
Q 013204 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD 260 (447)
Q Consensus 181 ~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~ 260 (447)
+++|++.+. +++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|... ....
T Consensus 155 ---------~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~ 214 (416)
T 1qz9_A 155 ---------PEELPQAID----QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP--VDLH 214 (416)
T ss_dssp ---------GGGHHHHCS----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHH
T ss_pred ---------HHHHHHHhC----CCceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC--CChh
Confidence 156776664 35788999999888888776 8999999999999999999997 54432 1122
Q ss_pred cCCCCCCeeee--cccCCCcccce-eEEEeChhHHHHhhhccCCC-Cc---------c------CcCCCCCCcHHHHHHH
Q 013204 261 KYSIKPDLVSF--AKALSSAYMPI-GAILVSPEVSEVIHSQSNTL-GS---------F------SHGFTYSGHPVSCAVA 321 (447)
Q Consensus 261 ~~~~~~d~v~~--sK~l~gg~~~~-g~~~~~~~~~~~~~~~~~~~-~~---------~------~~~~t~~~~~~~~~aa 321 (447)
. ..+|++++ +|.+++| .++ |++++++++++.+....... +. + ......+.++.+++++
T Consensus 215 ~--~~~d~~~~s~~K~l~~g-~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 291 (416)
T 1qz9_A 215 Q--AGADYAIGCTYKYLNGG-PGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMV 291 (416)
T ss_dssp H--HTCSEEEECSSSTTCCC-TTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHH
T ss_pred h--cCCCEEEecCcccCCCC-CCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHH
Confidence 2 23788876 5998766 687 99999998876654210000 00 0 0112335677888888
Q ss_pred HHHHHHHhh---hcHHHHHHHHHHHHHHhHhhc-c--CCCceeeEe--eeeeEEEEEeecCCCCCCCCCCCcchHHHHHH
Q 013204 322 IEALKIYKE---RNIVEQVNKIAPKFQDGVKAF-S--DSPIIGEIR--GTGLILGTEFADNKSPNEPFPPEWGIGAYFGA 393 (447)
Q Consensus 322 ~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l-~--~~~~~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 393 (447)
.++++.+.+ +++.++++++++++++.|+++ + +..+..... ..+.++.+.+.+ ...+.+
T Consensus 292 ~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------~~~l~~ 357 (416)
T 1qz9_A 292 ECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE--------------GYAVIQ 357 (416)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT--------------HHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC--------------HHHHHH
Confidence 888887754 346778888888999888775 3 332221110 134566665532 345888
Q ss_pred HHHHcCceEEee-CCEEEEecC-CCCCHHHHHHHHHHHHHHHHHH
Q 013204 394 QCEKHGMLVRVS-GDNIMMSPP-FIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 394 ~l~~~Gi~~~~~-g~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.|.++||.+... .+.+|++++ +.++++++++++++|++++++.
T Consensus 358 ~l~~~gi~~~~~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 358 ALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp HHHTTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCcEeccCCCCeEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence 899999998764 467999987 6899999999999999998764
No 117
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.92 E-value=5e-24 Score=209.08 Aligned_cols=342 Identities=14% Similarity=0.085 Sum_probs=216.1
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhc-CCccccc--CcCCChHHHHHH----HHHHHhcCcCCCCeEEEeCChh
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNT-LPFYHSF--WNRTTKPSLDLA----KELLEMFTASKMAKVFFTNSGS 105 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~~~~~--~~~~~~~~~~l~----~~l~~~~~~~~~~~v~~~~sGs 105 (447)
++|+|+.++.. ++ +|++.+++.+++.+ ....++. .....+....++ +++++.+. .+. ..+++++|+
T Consensus 23 ~~~i~~~~~~~--~~---~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g-~~~-~~i~~~sGt 95 (407)
T 2dkj_A 23 REGLELIASEN--FV---SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFG-AAW-ANVQPHSGS 95 (407)
T ss_dssp HTSEECCTTCC--CC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT-CSE-EECCCSSHH
T ss_pred hcceeeccCCC--CC---CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhC-CCc-ceEEecchH
Confidence 46899987763 33 89999999998864 2222211 110122222222 36777763 232 335667899
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccch--hhhhcccCCccccCCCCCCCCcceecCCC-CcccCCCCCCCh
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGST--LIAASLSGLPALHQKFDLPAPFVLHTDCP-HYWRYAHPGETE 182 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 182 (447)
+|++.+++.+. .++++|++.+++|++.. ...+...|.... ....+.. +.+.
T Consensus 96 ~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~----------~~~~~~~~~~~~-------- 149 (407)
T 2dkj_A 96 QANMAVYMALM--------EPGDTLMGMDLAAGGHLTHGSRVNFSGKLYK----------VVSYGVRPDTEL-------- 149 (407)
T ss_dssp HHHHHHHHHHC--------CTTCEEEEECGGGTCCGGGTCTTSHHHHHSE----------EEEECCCTTTSS--------
T ss_pred HHHHHHHHHhc--------CCCCEEEEecccccCccchHHHHHhcCceEE----------EEecCCCcccCc--------
Confidence 99999999873 33578999999998773 122111111000 0011100 0000
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEEE-ccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC-CCccccccccc
Q 013204 183 EEYSTRLANNLEDLILKEGPETIAAFIA-EPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA-FGRLGTMFGCD 260 (447)
Q Consensus 183 ~~~~~~~~~~le~~l~~~~~~~~a~vi~-epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g-~g~~g~~~~~~ 260 (447)
.+++++++.+... ++++|++ +|.++ ...+ +++|.++|++||+++|+||+|++ +...|....
T Consensus 150 -----~d~~~l~~~l~~~---~~~~v~~~~p~~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~-- 212 (407)
T 2dkj_A 150 -----IDLEEVRRLALEH---RPKVIVAGASAYP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN-- 212 (407)
T ss_dssp -----CCHHHHHHHHHHH---CCSEEEECCSSCC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--
T ss_pred -----cCHHHHHHHHhhc---CCeEEEEeccccC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCC--
Confidence 0147788877632 2345555 67775 3333 89999999999999999999984 322332211
Q ss_pred cCCCCCCee--eecccCCCcccceeEEEeC-hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh---hcHH
Q 013204 261 KYSIKPDLV--SFAKALSSAYMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE---RNIV 334 (447)
Q Consensus 261 ~~~~~~d~v--~~sK~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~ 334 (447)
... .+|++ +++|+++| +++|+++++ +++++.+.... ..+.+.+.++..++++.++++.+.. ++..
T Consensus 213 ~~~-~~di~~~s~sK~l~g--~~~G~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~ 283 (407)
T 2dkj_A 213 PLP-YAHVVTSTTHKTLRG--PRGGLILSNDPELGKRIDKLI------FPGIQGGPLEHVIAGKAVAFFEALQPEFKEYS 283 (407)
T ss_dssp CTT-TCSEEEEESSGGGCC--CSCEEEEESCHHHHHHHHHHH------TTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred ccc-cccEEEEeccccCCC--CCceEEEECCHHHHHHHHhhh------cccccCCCcHHHHHHHHHHHHHHHHhhHHHHH
Confidence 111 26877 67899986 467999999 78888776421 1223445677777677777876533 4567
Q ss_pred HHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---------
Q 013204 335 EQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS--------- 405 (447)
Q Consensus 335 ~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------- 405 (447)
++++++.+++++.|+++ +..+... ++.+.++.+.+..... ....+.+.|.++||.+.++
T Consensus 284 ~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~v~~~~~~~~~~~~ 351 (407)
T 2dkj_A 284 RLVVENAKRLAEELARR-GYRIVTG-GTDNHLFLVDLRPKGL----------TGKEAEERLDAVGITVNKNAIPFDPKPP 351 (407)
T ss_dssp HHHHHHHHHHHHHHHHT-TCEEGGG-SCSSSEEEEECGGGTC----------CHHHHHHHHHHTTEECEECCCTTCSSCT
T ss_pred HHHHHHHHHHHHHHHhC-CceeecC-CCCceEEEEECcccCC----------CHHHHHHHHHHcCceecCCcCccccccc
Confidence 78888888888888876 3322211 3457777777764210 1446788899999998874
Q ss_pred --CCEEEEecCC----CCCHHHHHHHHHHHHHHHHH-----HHHHHHHhhh
Q 013204 406 --GDNIMMSPPF----IMSPEEVDELISKYGKALKA-----TEERVKELKS 445 (447)
Q Consensus 406 --g~~iR~~~~~----~~t~e~i~~~~~~l~~~l~~-----~~~~~~~~~~ 445 (447)
.+.+|++++. .++++++++++++|++++++ +++++..+.+
T Consensus 352 ~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 402 (407)
T 2dkj_A 352 RVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLEGPSEALREEVRRLAL 402 (407)
T ss_dssp TTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cCCCceeeecccccccCCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 2469999765 38999999999999999988 7777666544
No 118
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.92 E-value=5.2e-24 Score=205.18 Aligned_cols=329 Identities=13% Similarity=0.057 Sum_probs=205.8
Q ss_pred EEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHH
Q 013204 35 YLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKL 114 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~ 114 (447)
+++|.++ ..|+.+|++.+++.+++..... ..+..+...++++++++.+. .+.+++++++||++|++.+++.
T Consensus 15 ~i~l~~~----~~~~~~~~v~~a~~~~~~~~~~----~~g~~~~~~~~~~~l~~~~g-~~~~~v~~~~g~t~a~~~~~~~ 85 (359)
T 1svv_A 15 PYSFVND----YSVGMHPKILDLMARDNMTQHA----GYGQDSHCAKAARLIGELLE-RPDADVHFISGGTQTNLIACSL 85 (359)
T ss_dssp CEECSCS----CSSCCCHHHHHHHHHHTTCCCC----STTCSHHHHHHHHHHHHHHT-CTTSEEEEESCHHHHHHHHHHH
T ss_pred eEEecCC----CcCCCCHHHHHHHHHHHhhccc----cccccHHHHHHHHHHHHHhC-CCCccEEEeCCchHHHHHHHHH
Confidence 5666543 2457899999999998865221 13457788899999998874 5667999999999999999998
Q ss_pred HHHHHHhcCCCCcceEEEEcCCCccchhh-hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHH
Q 013204 115 VWYYNNALGRPNKKKFIARQKSYHGSTLI-AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193 (447)
Q Consensus 115 ~~~~~~~~~~~~~~~vi~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (447)
++ .++++|++.+++||+.... .....|.. +..++..+ +. . ++++|
T Consensus 86 ~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~-~~-----~--------d~~~l 131 (359)
T 1svv_A 86 AL--------RPWEAVIATQLGHISTHETGAIEATGHK------------VVTAPCPD-GK-----L--------RVADI 131 (359)
T ss_dssp HC--------CTTEEEEEETTSHHHHSSTTHHHHTTCC------------EEEECCTT-SC-----C--------CHHHH
T ss_pred Hh--------CCCCEEEEcccchHHHHHHHHHhcCCCe------------eEEEeCCC-Ce-----e--------cHHHH
Confidence 74 2347899999999887542 11111211 11222210 00 0 13778
Q ss_pred HHHHHhh---CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCC--CccccccccccCC--CCC
Q 013204 194 EDLILKE---GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF--GRLGTMFGCDKYS--IKP 266 (447)
Q Consensus 194 e~~l~~~---~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~--g~~g~~~~~~~~~--~~~ 266 (447)
++.+... ...++++|++++.+ .+|.+ .+.+++++|.++|++||+++|+||+|.+| |..+.. ....+ ..+
T Consensus 132 ~~~l~~~~~~~~~~~~~v~~~~~~-ptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~~ 207 (359)
T 1svv_A 132 ESALHENRSEHMVIPKLVYISNTT-EVGTQ-YTKQELEDISASCKEHGLYLFLDGARLASALSSPVND--LTLADIARLT 207 (359)
T ss_dssp HHHHHHSCSTTSCEEEEEEEESSC-TTSCC-CCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCC--CCHHHHHHHC
T ss_pred HHHHHHHHhccCCCceEEEEEcCC-CCcee-cCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcc--hhhhhhhhcC
Confidence 8877642 11247788888775 46654 45799999999999999999999999654 443321 11111 236
Q ss_pred Ceeee--cccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 013204 267 DLVSF--AKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKF 344 (447)
Q Consensus 267 d~v~~--sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l 344 (447)
|++++ +|. ++. .++|+++.++++++.+.... ...+.++..+....++..+.++...-++..++++++++++
T Consensus 208 d~~~~s~~K~-g~~-~~~g~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 280 (359)
T 1svv_A 208 DMFYIGATKA-GGM-FGEALIILNDALKPNARHLI-----KQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAIL 280 (359)
T ss_dssp SEEEEECTTT-TCS-SCEEEEECSGGGCTTHHHHH-----HHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH
T ss_pred CEEEEecccC-CCC-CceEEEEEcccHHHHHHHHH-----hcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 87765 463 333 57789999998876664210 0122223222222222222232111134567778888888
Q ss_pred HHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee---C-CEEEEecCCCCCH
Q 013204 345 QDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS---G-DNIMMSPPFIMSP 419 (447)
Q Consensus 345 ~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~---g-~~iR~~~~~~~t~ 419 (447)
++.| +..+..+... ..+.++.+.+. ..+.++|+++ ||++.+. + +.+|+++++.+++
T Consensus 281 ~~~L-~~~~~~~~~~--~~~~~~~~~~~----------------~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~ 341 (359)
T 1svv_A 281 KAGL-EACGIRLAWP--SASNQLFPILE----------------NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEE 341 (359)
T ss_dssp HHHH-HHTTCCBSSC--CSSSEECBEEE----------------HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCH
T ss_pred HHHh-ccCCeEEccC--CccceEEEEcC----------------HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCH
Confidence 8888 4433332211 12333333332 2477888888 9998542 2 4699999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKALKAT 436 (447)
Q Consensus 420 e~i~~~~~~l~~~l~~~ 436 (447)
+++++++++|+++++++
T Consensus 342 ~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 342 KECHRFVEVLKRLVAST 358 (359)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999987654
No 119
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.92 E-value=5.8e-24 Score=207.43 Aligned_cols=325 Identities=13% Similarity=0.118 Sum_probs=214.8
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcce
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~ 129 (447)
.+|++.+++.++... ..+. ...+...++++++++.+.....+++++++||++|++.+++.+. .++++
T Consensus 34 ~~~~v~~a~~~~~~~--~~~~---~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~--------~~gd~ 100 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIG--HMQK---EMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL--------EPGDS 100 (393)
T ss_dssp CCHHHHHHTTCCCCC--TTSH---HHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC--------CTTCE
T ss_pred CCHHHHHHhcccccC--cccH---HHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC--------CCCCE
Confidence 578888887664321 1111 1234566888888888753333469999999999999999763 34578
Q ss_pred EEEEcCCCccch-hhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEE
Q 013204 130 FIARQKSYHGST-LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAF 208 (447)
Q Consensus 130 vi~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~v 208 (447)
|++..++|++.. .......|... ..++.+..+. .++++|++.+... ++++|
T Consensus 101 vl~~~~~~~~~~~~~~~~~~g~~~------------~~~~~~~~~~-------------~d~~~l~~~i~~~---~~~~v 152 (393)
T 3kgw_A 101 FLTGTNGIWGMRAAEIADRIGARV------------HQMIKKPGEH-------------YTLQEVEEGLAQH---KPVLL 152 (393)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCEE------------EEEECCTTCC-------------CCHHHHHHHHHHH---CCSEE
T ss_pred EEEEeCCchhHHHHHHHHHcCCce------------EEEeCCCCCC-------------CCHHHHHHHHhhC---CCcEE
Confidence 888888887643 22222222211 1111111100 0147788888642 45678
Q ss_pred EEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcccceeEEE
Q 013204 209 IAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGAIL 286 (447)
Q Consensus 209 i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~~ 286 (447)
+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|. ..+.... ..+|++++| |+++|+ .++|+++
T Consensus 153 ~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~-~g~--~~~~~~~--~~~d~~~~s~sK~~~~~-~g~g~~~ 222 (393)
T 3kgw_A 153 FLVHGESSTGVVQP----LDGFGELCHRYQCLLLVDSVAS-LGG--VPIYMDQ--QGIDIMYSSSQKVLNAP-PGISLIS 222 (393)
T ss_dssp EEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-TTT--SCCCTTT--TTCCEEEEESSSTTCCC-SSCEEEE
T ss_pred EEeccCCcchhhcc----HHHHHHHHHHcCCEEEEECCcc-ccC--cccchhh--cCCCEEEecCcccccCC-CceeEEE
Confidence 88888888887776 8899999999999999999997 331 1222222 236777655 999877 6899999
Q ss_pred eChhHHHHhhhccCCCCcc----------------CcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHh
Q 013204 287 VSPEVSEVIHSQSNTLGSF----------------SHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDG 347 (447)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~----------------~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~ 347 (447)
+++++++.+.........+ ....+++.++.+++++.++++.+.+ ++..++++++++++.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~ 302 (393)
T 3kgw_A 223 FNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKH 302 (393)
T ss_dssp ECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999988886432111110 0122345677888888888887655 45678888888999999
Q ss_pred HhhccCCCcee-e-EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee-----CCEEEEec-CCCCC
Q 013204 348 VKAFSDSPIIG-E-IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS-----GDNIMMSP-PFIMS 418 (447)
Q Consensus 348 L~~l~~~~~~~-~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----g~~iR~~~-~~~~t 418 (447)
|+++ +..... . ....+.+..+.+.... ....+.+.|+++ ||++.++ ++.+|+++ ++.++
T Consensus 303 L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~ 370 (393)
T 3kgw_A 303 LQEM-GLKFFVKDPEIRLPTITTVTVPAGY-----------NWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNAT 370 (393)
T ss_dssp HHHT-TCCBSSSSGGGBCSSEEEEECCTTB-----------CHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCC
T ss_pred HHHc-CCeeccCChhhcCCeEEEEeCCCCC-----------CHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCC
Confidence 8876 332211 1 1122345555554321 145688888888 9999864 36799998 76779
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013204 419 PEEVDELISKYGKALKATE 437 (447)
Q Consensus 419 ~e~i~~~~~~l~~~l~~~~ 437 (447)
++++++++++|++++++++
T Consensus 371 ~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 371 TENVDRVAEALREALQHCP 389 (393)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999999999997654
No 120
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.92 E-value=2e-23 Score=208.64 Aligned_cols=361 Identities=14% Similarity=0.149 Sum_probs=210.1
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~ 110 (447)
.|+.||||.++.+. |.+.+++.+.+...... ..+.+...++++++++++ +.++++|++||++|++.
T Consensus 41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~~~----y~~~~~~~~l~~~la~~~---~~~~v~~t~ggt~A~~~ 106 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGDEA----YAGSRNYYDLKDKAKELF---NYDYIIPAHQGRGAENI 106 (467)
T ss_dssp GGGCSEECSCSSSC-------CCEEHHHHHHHHTCCCC----SSSCHHHHHHHHHHHHHH---CCCEEEEESSHHHHHHH
T ss_pred CCceeeecccCcCC-------HHHHHHHHHHHhhcccc----cccCccHHHHHHHHHHHc---CCCcEEEcCCcHHHHHH
Confidence 46889999877532 78888888877543221 124567788999999997 34799999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCc-cchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYH-GSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yh-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
|+++++.++...|+. +..||+. .+| +.+...+...|.....-.. ......+....+.+ ..+
T Consensus 107 al~~~~~~~~~~Gd~-~~~viv~--~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~-----------~~d 168 (467)
T 1ax4_A 107 LFPVLLKYKQKEGKA-KNPVFIS--NFHFDTTAAHVELNGCKAINIVT----EKAFDSETYDDWKG-----------DFD 168 (467)
T ss_dssp HHHHHHHHHHHTTCC-SSCEEEE--SSCCHHHHHHHHHTTCEEEECBC----GGGGCTTSCCTTTT-----------CBC
T ss_pred HHHHHHHhhccCCCc-cceEEEe--ccccchhhHHHhccCCceecccc----cccccccccCCccc-----------ccC
Confidence 999887543222311 0115555 455 5544444444432211000 00000000000000 011
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC--C--------Ccccccccc
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA--F--------GRLGTMFGC 259 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g--~--------g~~g~~~~~ 259 (447)
+++|++.+....++++++|+++++++.+|..+++.+++++|+++|++||++||+||++.. . +..|...
T Consensus 169 ~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~-- 246 (467)
T 1ax4_A 169 IKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATI-- 246 (467)
T ss_dssp HHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCH--
T ss_pred HHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCch--
Confidence 478888887543236889999998888755788899999999999999999999998652 0 1222110
Q ss_pred ccCC----CCCCeee--ecccCCCccccee-EEEeC-h-hHHHHhhhccCCCCccCcCCCCCCcHHHHHH-HHHHHHHHh
Q 013204 260 DKYS----IKPDLVS--FAKALSSAYMPIG-AILVS-P-EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV-AIEALKIYK 329 (447)
Q Consensus 260 ~~~~----~~~d~v~--~sK~l~gg~~~~g-~~~~~-~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a-a~a~l~~~~ 329 (447)
...+ ..+|+++ ++|.++ .|+| +++++ + ++++.+..... .+....++...+..+.+ +.++++...
T Consensus 247 ~~~~~~~~~~~d~~~~s~sK~~g---~~~Gg~~~~~d~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~l~~~~ 320 (467)
T 1ax4_A 247 KEVIFDMYKYADALTMSAKKDPL---LNIGGLVAIRDNEEIFTLARQRCV---PMEGFVTYGGLAGRDMAAMVQGLEEGT 320 (467)
T ss_dssp HHHHHHHGGGCSEEEEETTSTTC---CSSCEEEEESSCHHHHHHHHHHHH---HHTCSTTTTTCCHHHHHHHHHHHHHTT
T ss_pred hhhhhhhccccceEEEeccccCC---CCcceEEEeCCHHHHHHHHHhhcc---ccccccccCCccchHHHHHHHHHHHhh
Confidence 0000 1256664 567664 4554 55566 6 77776542110 00111233333333332 223555433
Q ss_pred hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHH-HHcCceEEee---
Q 013204 330 ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC-EKHGMLVRVS--- 405 (447)
Q Consensus 330 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~--- 405 (447)
+++..++..++.+++++.|++. +.+++... .|.++.+.+..-. +. ++........+.++| .++||.+.+.
T Consensus 321 ~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~--~~~~~~~~~~~~~-~~--~~~~~~~~~~l~~~L~~~~gv~v~~~g~~ 394 (467)
T 1ax4_A 321 EEEYLHYRIGQVKYLGDRLREA-GIPIQYPT--GGHAVFVDCKKLV-PQ--IPGDQFPAQAVINALYLESGVRAVEIGSF 394 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT-TCCBCSSC--CSSEEEEESTTTC-TT--SCGGGCHHHHHHHHHHHHHCEECEEESHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhC-CCCcccCC--CceEEEEehhhhc-cc--cccCCCCHHHHHHHHHHhcCceeeecCcc
Confidence 3334555567778888888763 33333222 2334444421100 00 000000245678888 8899998872
Q ss_pred --------C-------CEEEEecC-CCCCHHHHHHHHHHHHHHHHHHH
Q 013204 406 --------G-------DNIMMSPP-FIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 406 --------g-------~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
| +.+||+++ ..+|+++|++++++|++++++++
T Consensus 395 ~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~ 442 (467)
T 1ax4_A 395 LLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA 442 (467)
T ss_dssp HHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred ccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhhh
Confidence 2 57999998 55999999999999999887743
No 121
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.92 E-value=3.3e-23 Score=201.43 Aligned_cols=337 Identities=19% Similarity=0.181 Sum_probs=217.7
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCC-cccc---cCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-FYHS---FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
.|||+.++ |+.+|++.+++.+++.+.. ..+. ..........++.+++++++. .+.+++++++||++|++
T Consensus 3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~~~v~~~~g~t~a~~ 75 (384)
T 1eg5_A 3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLG-VSPSEIFFTSCATESIN 75 (384)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHT-SCGGGEEEESCHHHHHH
T ss_pred EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcC-CCCCeEEEECCHHHHHH
Confidence 58887554 4689999999999987521 1100 001123456788899998873 45578999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh--cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA--SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
.+++.+..+. . .++++|++.++.||+...... ...|... ..++....+.
T Consensus 76 ~~~~~~~~~~---~-~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~------------- 126 (384)
T 1eg5_A 76 WILKTVAETF---E-KRKRTIITTPIEHKAVLETMKYLSMKGFKV------------KYVPVDSRGV------------- 126 (384)
T ss_dssp HHHHHHHHHT---T-TTCCEEEECTTSCHHHHHHHHHHHHTTCEE------------EECCBCTTSC-------------
T ss_pred HHHHhhhhhc---c-CCCCEEEECCCCchHHHHHHHHHHhcCCEE------------EEEccCCCCc-------------
Confidence 9999875321 0 124789999999988743331 2222211 1111111000
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcC--CEEEEehhhcCCCccccccccccCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD--ILFIADEVICAFGRLGTMFGCDKYSIK 265 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g--~~li~DEv~~g~g~~g~~~~~~~~~~~ 265 (447)
.++++|++.+. +++++|+++++++.+|.+.+ +++|.++|++|| +++|+||+|+ +|.. ..... ...
T Consensus 127 ~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~--~~~~~--~~~ 193 (384)
T 1eg5_A 127 VKLEELEKLVD----EDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI--PFSLE--KLE 193 (384)
T ss_dssp BCHHHHHHHCC----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS--CCCCT--TTC
T ss_pred cCHHHHHHHhC----CCCeEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCc--ccCch--hcC
Confidence 01366776664 35778888888888887776 899999999999 9999999997 6543 22222 235
Q ss_pred CCeeeec--ccCCCcccceeEEEeChhH--HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHH
Q 013204 266 PDLVSFA--KALSSAYMPIGAILVSPEV--SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNK 339 (447)
Q Consensus 266 ~d~v~~s--K~l~gg~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~ 339 (447)
+|++++| |.++. .++|++++++++ ...+... .......+++.++++++++.++|+...+ ++..+++++
T Consensus 194 ~di~~~s~sK~~g~--~G~G~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 267 (384)
T 1eg5_A 194 VDYASFSAHKFHGP--KGVGITYIRKGVPIRPLIHGG----GQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEK 267 (384)
T ss_dssp CSEEEEEGGGGTSC--TTCEEEEECTTSCCCCSBCSS----CTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCEEEecHHHhcCC--CceEEEEEcCCCccccccccC----cccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 7888766 97553 237999998875 2222100 0001123556788888888888886533 456677788
Q ss_pred HHHHHHHhHhhccCCCceeeEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------------
Q 013204 340 IAPKFQDGVKAFSDSPIIGEIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------------- 405 (447)
Q Consensus 340 ~~~~l~~~L~~l~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------------- 405 (447)
+.+++.+.|++. +..+..... ..+.++.+.+... ....+.+.|.++||.+.++
T Consensus 268 ~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~ 334 (384)
T 1eg5_A 268 LRSKLVSGLMNL-GAHIITPLEISLPNTLSVSFPNI------------RGSTLQNLLSGYGIYVSTSSACTSKDERLRHV 334 (384)
T ss_dssp HHHHHHHHHHTT-TCEECSCTTSBCTTEEEEECTTC------------CHHHHHHHHHHTTEECBC------------CH
T ss_pred HHHHHHHHhCCC-CeEEeCCcccCCCCEEEEEeCCC------------CHHHHHHHHhhCCeEEeccccccCCCCcchHH
Confidence 888888888763 221111101 1233445544321 1446788899999998863
Q ss_pred -----------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 406 -----------GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 406 -----------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.+.+|++++..++++++++++++|+++++++++
T Consensus 335 ~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 335 LDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLDL 378 (384)
T ss_dssp HHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred HHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 146999988889999999999999999987764
No 122
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.92 E-value=3.1e-23 Score=203.41 Aligned_cols=336 Identities=10% Similarity=0.043 Sum_probs=213.7
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCccc-ccCc---CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYH-SFWN---RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSE 106 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~---~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGse 106 (447)
++..|||+.++. +.+|++.+++.+.+.+..... +... ...+...++.+++++++. .++++++|++||++
T Consensus 25 ~~~~~ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~~~v~~~~g~t~ 97 (406)
T 3cai_A 25 DGWVHFDAPAGM------LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVN-ADPGGVVLGADRAV 97 (406)
T ss_dssp SSCEECBGGGCC------CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHT-CCGGGEEEESCHHH
T ss_pred CCeEEEeCCCcC------CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEeCChHH
Confidence 457899986542 478999999999987632111 0000 123456788889988874 45578999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcc---cCCccccCCCCCCCCcceecCCC-CcccCCCCCCCh
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASL---SGLPALHQKFDLPAPFVLHTDCP-HYWRYAHPGETE 182 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 182 (447)
++..+++.+... . .++++|++..+.|++........ .|... ..++.. ..+. .
T Consensus 98 al~~~~~~l~~~----~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v------------~~v~~~~~~~~-----~-- 153 (406)
T 3cai_A 98 LLSLLAEASSSR----A-GLGYEVIVSRLDDEANIAPWLRAAHRYGAKV------------KWAEVDIETGE-----L-- 153 (406)
T ss_dssp HHHHHHHHTGGG----G-BTTCEEEEETTSCGGGTHHHHHHHHHHBCEE------------EEECCCTTTCC-----C--
T ss_pred HHHHHHHHHhhc----c-CCCCEEEEcCCccHHHHHHHHHHHHhcCCeE------------EEEecCcccCC-----c--
Confidence 999988854100 0 23478999999998764332221 12111 112211 0000 0
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccC
Q 013204 183 EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKY 262 (447)
Q Consensus 183 ~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~ 262 (447)
++++|++.+. +++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|... +....+
T Consensus 154 ------d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~ 216 (406)
T 3cai_A 154 ------PTWQWESLIS----KSTRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYRL--LDIRET 216 (406)
T ss_dssp ------CGGGHHHHCC----TTEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTCC--CCHHHH
T ss_pred ------CHHHHHHHhC----CCceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC--CCchhc
Confidence 1266666664 35788889998888888776 8999999999999999999997 33221 222222
Q ss_pred CCCCCeee--ecccCCCccccee-EEEeChhHHHHhhhccCCCCc--cCcCCCCCCcHHHHHHHHHHHHHHhh-------
Q 013204 263 SIKPDLVS--FAKALSSAYMPIG-AILVSPEVSEVIHSQSNTLGS--FSHGFTYSGHPVSCAVAIEALKIYKE------- 330 (447)
Q Consensus 263 ~~~~d~v~--~sK~l~gg~~~~g-~~~~~~~~~~~~~~~~~~~~~--~~~~~t~~~~~~~~~aa~a~l~~~~~------- 330 (447)
.+|+++ ++|.++ + ++| ++++++++++.+.......+. .......+.++.+++++.++++.+..
T Consensus 217 --~~d~~~~s~~K~~g-~--~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~ 291 (406)
T 3cai_A 217 --DADVVTVNAHAWGG-P--PIGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARG 291 (406)
T ss_dssp --CCSEEEEEGGGGTS-C--SCEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCS
T ss_pred --CCCEEEeehhhhcC-C--CcCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhcccccc
Confidence 367775 569664 3 388 999999888776421100000 00011334677777777778876653
Q ss_pred ----------hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 331 ----------RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 331 ----------~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
+++.++++++.+++.+.|+++.+..+.......+.++.+.+... ....+.+.|.++||
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~L~~~gi 359 (406)
T 3cai_A 292 SRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKV------------PADRVVQRLADNGI 359 (406)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTB------------CHHHHHHHHHHTTE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECCc------------CHHHHHHHHHHCCc
Confidence 33556667777777777776522211111111244566665421 14568888999999
Q ss_pred eEEeeC--------------CEEEEecCCCCCHHHHHHHHHHHHH
Q 013204 401 LVRVSG--------------DNIMMSPPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 401 ~~~~~g--------------~~iR~~~~~~~t~e~i~~~~~~l~~ 431 (447)
.+.++. +.+|++++..++++++++++++|++
T Consensus 360 ~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 360 LAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp ECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred EEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 998753 5699999988999999999999875
No 123
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.92 E-value=8e-24 Score=208.67 Aligned_cols=342 Identities=11% Similarity=0.023 Sum_probs=208.5
Q ss_pred CCEEEecCCccccccCCCCC--HHHHHHHHHHHhcCC-cccccCcCCChHHHHHHHHHHHhcCc--C---CCC--eEEEe
Q 013204 32 GKKYLDSLAGLWCTALGGSE--PRLVAAATAQLNTLP-FYHSFWNRTTKPSLDLAKELLEMFTA--S---KMA--KVFFT 101 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~--p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~--~---~~~--~v~~~ 101 (447)
+..++||..|.+..+-|+.+ |.|.+++.+++++.. ..+....+ ..++.+.+++++.. . +++ +++++
T Consensus 48 ~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 123 (420)
T 4f4e_A 48 RPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDG----IAAYDASVQKLLLGDDSPLIAAGRVVTAQA 123 (420)
T ss_dssp CSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCC----cHHHHHHHHHHhcCCCccccccCceEEEEC
Confidence 45789999887666667665 899999999887622 22222122 33444444444421 1 356 89999
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC--CcccCCCCC
Q 013204 102 NSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP--HYWRYAHPG 179 (447)
Q Consensus 102 ~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 179 (447)
+||++|+..++++.... .++++|++.+|+|+++.......+.... .+++. +.+.
T Consensus 124 ~G~t~al~~~~~~~~~~------~~gd~Vlv~~p~~~~~~~~~~~~g~~~~-------------~v~~~~~~~~~----- 179 (420)
T 4f4e_A 124 LGGTGALKIGADFLRTL------NPKAKVAISDPSWENHRALFDMAGFEVV-------------AYPYYDAKTNG----- 179 (420)
T ss_dssp EHHHHHHHHHHHHHHHH------CTTCCEEEEESCCHHHHHHHHHTTCCEE-------------EEECEETTTTE-----
T ss_pred CccHHHHHHHHHHHHHh------CCCCEEEEeCCCcHhHHHHHHHcCCeEE-------------EeeeeccccCc-----
Confidence 99999999998754322 3457899999999998655554333221 11110 0000
Q ss_pred CChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc--cc
Q 013204 180 ETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT--MF 257 (447)
Q Consensus 180 ~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~--~~ 257 (447)
.+++++++.+.+.. +.++++++++.++.+|. .++.+.+++|+++|++||+++|+||+|.+++..+. ..
T Consensus 180 --------~d~~~l~~~l~~~~-~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~ 249 (420)
T 4f4e_A 180 --------VNFDGMLAALNGYE-PGTIVVLHACCHNPTGV-DLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAA 249 (420)
T ss_dssp --------ECHHHHHHHHTTCC-TTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGH
T ss_pred --------cCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhH
Confidence 01477888876443 34566676666666664 55788899999999999999999999998876541 11
Q ss_pred cc-ccCCCCCCe---eeecccCCCcccceeEEEe---ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH--
Q 013204 258 GC-DKYSIKPDL---VSFAKALSSAYMPIGAILV---SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY-- 328 (447)
Q Consensus 258 ~~-~~~~~~~d~---v~~sK~l~gg~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~-- 328 (447)
.. ...+..+++ .++||.++..++|+|++++ ++++++.+...- .......+...+++++.++.+.++..
T Consensus 250 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~l 326 (420)
T 4f4e_A 250 AVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQL---KRVIRTNYSNPPTHGGAIVAAVLASPEL 326 (420)
T ss_dssp HHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHH---HHHHHTTTSSCCSHHHHHHHHHHHCHHH
T ss_pred HHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHH---HHHHhcccCCCCHHHHHHHHHHhcCHHH
Confidence 11 111222332 2689999853389999863 456554432100 01111223344566666665555421
Q ss_pred ----h--hhcHHHHHHHHHHHHHHhHhhccC-CCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCce
Q 013204 329 ----K--ERNIVEQVNKIAPKFQDGVKAFSD-SPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGML 401 (447)
Q Consensus 329 ----~--~~~~~~~~~~~~~~l~~~L~~l~~-~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 401 (447)
+ -++..++++++++.+.+.|+++.. .++.......|.+..+.+. ...+.+.+.++||+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~---------------~~~~~~~l~~~gI~ 391 (420)
T 4f4e_A 327 RASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLT---------------SAQVDRLREEFGIY 391 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCC---------------HHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCCC---------------HHHHHHHHHhCCEE
Confidence 1 134567777788888888877621 1111111222334333321 23466677789999
Q ss_pred EEeeCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 402 VRVSGDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 402 ~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
+.+++ |+++. ..++++|++++++|++++
T Consensus 392 v~~~~---Ris~~-~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 392 AVSTG---RICVA-ALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp CCTTS---EEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred ecCCC---eEEEe-cCCHHHHHHHHHHHHHHh
Confidence 98764 88864 348888999999999876
No 124
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.92 E-value=1e-22 Score=201.00 Aligned_cols=305 Identities=13% Similarity=0.136 Sum_probs=200.4
Q ss_pred CCChHHHHHHHHHHHhcCcCC--------CCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh
Q 013204 74 RTTKPSLDLAKELLEMFTASK--------MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA 145 (447)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~--------~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~ 145 (447)
+..+....+++.+.+.+.... .+++++++|+++|+..+++.+. ..++.|++.+|+|++......
T Consensus 79 G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~ 150 (425)
T 2r2n_A 79 GIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII--------NPGDNVLLDEPAYSGTLQSLH 150 (425)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC--------CCCCEEEEeCCCcHHHHHHHH
Confidence 345566677777766553221 2689999999999999999873 234789999999999865543
Q ss_pred cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC--------CCcEEEEEEcc-ccCC
Q 013204 146 SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG--------PETIAAFIAEP-VIGA 216 (447)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--------~~~~a~vi~ep-v~~~ 216 (447)
.. |.... .++.... + .++++|++.+.... ..++++|++.| .++.
T Consensus 151 ~~-g~~~~------------~v~~~~~------~--------~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NP 203 (425)
T 2r2n_A 151 PL-GCNII------------NVASDES------G--------IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNP 203 (425)
T ss_dssp GG-TCEEE------------EECEETT------E--------ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTT
T ss_pred Hc-CCEEE------------EeCcCCC------C--------CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCC
Confidence 32 22111 1111000 0 11477888876321 12456776654 4555
Q ss_pred CCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccc-ccccCC---CCCCeeeecccCCCcccceeEEEeChhHH
Q 013204 217 GGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMF-GCDKYS---IKPDLVSFAKALSSAYMPIGAILVSPEVS 292 (447)
Q Consensus 217 ~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~-~~~~~~---~~~d~v~~sK~l~gg~~~~g~~~~~~~~~ 292 (447)
+|. ..+.+.+++|.++|++||+++|+||+|+++.+.|... ....++ ....+.+|||.++.| +|+|+++++++++
T Consensus 204 tG~-~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~G-lRiG~~~~~~~l~ 281 (425)
T 2r2n_A 204 TGN-SLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSG-LRIGFLTGPKPLI 281 (425)
T ss_dssp TCC-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCST-TCCEEEEEEHHHH
T ss_pred CCC-cCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCc-cceEEEecCHHHH
Confidence 564 4678899999999999999999999999876655421 111122 122344789999855 8999999999998
Q ss_pred HHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh-------hcHHHHHHHHHHHHHHhHhhc-cCCCceee-Eeee
Q 013204 293 EVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-------RNIVEQVNKIAPKFQDGVKAF-SDSPIIGE-IRGT 363 (447)
Q Consensus 293 ~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-------~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~-~~~~ 363 (447)
+.+... ....+++.+++++.++.++|+.+.. ++..+.++++.+.+.+.|++. .+ +... .+..
T Consensus 282 ~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~--~~~~~~p~~ 352 (425)
T 2r2n_A 282 ERVILH-------IQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTG--LAEWHVPAA 352 (425)
T ss_dssp HHHHHH-------HHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS--SEEECCCSB
T ss_pred HHHHHH-------HHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CeEEeCCCc
Confidence 887632 2334677889999988888875322 223445555666666666653 22 2111 2345
Q ss_pred eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 364 GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----------GDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 364 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
|.++.+.+...... ...+.+.|.++||.+.++ .+.+|++++. .++++|++++++|++++
T Consensus 353 g~~~~~~~~~~~~~----------~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l 421 (425)
T 2r2n_A 353 GMFLWIKVKGINDV----------KELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLI 421 (425)
T ss_dssp SSEEEEEETTCSCC----------HHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCH----------HHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHH
Confidence 66777777542110 222567888999999874 1569999663 69999999999999988
Q ss_pred HH
Q 013204 434 KA 435 (447)
Q Consensus 434 ~~ 435 (447)
++
T Consensus 422 ~~ 423 (425)
T 2r2n_A 422 KE 423 (425)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 125
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.92 E-value=2e-23 Score=205.52 Aligned_cols=309 Identities=13% Similarity=0.052 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHhc----C-cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCC-CCcceEEEE-cCCCccchhhhhcccCC
Q 013204 78 PSLDLAKELLEMF----T-ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR-PNKKKFIAR-QKSYHGSTLIAASLSGL 150 (447)
Q Consensus 78 ~~~~l~~~l~~~~----~-~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~-~~~~~vi~~-~~~yhg~~~~~~~~~~~ 150 (447)
...++.+.+++++ . ..++++|++++||++|++.+++.+.. .|+ .++.+|++. ++.||++..........
T Consensus 76 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~----~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~ 151 (417)
T 3g7q_A 76 GKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAG----RRADGSTKKVLFPLAPEYIGYADSGLEDDLF 151 (417)
T ss_dssp SHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSB----C----CCBEEEESSCCCHHHHHC-----CCE
T ss_pred CcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcC----CCccCCcceEEEeCCCccccchhhccchhhh
Confidence 3456666666654 1 24678999999999999999998731 111 112277776 99999986543221110
Q ss_pred ccccCCCCCCCCcceecCCCC-cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHH
Q 013204 151 PALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEK 229 (447)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~ 229 (447)
.... ..+..++... .+. .+ +++++ + . +++++|+++..++.+|. ..+.+.+++
T Consensus 152 ~~~~-------~~~~~~~~~~~~~~-----~d--------~~~l~--~---~-~~~~~v~~~~p~NptG~-~~~~~~~~~ 204 (417)
T 3g7q_A 152 VSAR-------PNIELLPEGQFKYH-----VD--------FEHLH--I---G-EETGMICVSRPTNPTGN-VITDEELMK 204 (417)
T ss_dssp EECC-------CEEEEEGGGEEEEE-----CC--------GGGCC--C---C-TTEEEEEEESSCTTTCC-CCCHHHHHH
T ss_pred cccc-------CcccccCCcccccc-----cC--------HHHhc--c---c-cCceEEEECCCCCCCCC-ccCHHHHHH
Confidence 0000 0011111000 000 00 13343 1 2 34556666555555664 556778999
Q ss_pred HHHHHHhcCCEEEEehhhcCCCcccccccc---ccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccC
Q 013204 230 VQAVVKKYDILFIADEVICAFGRLGTMFGC---DKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFS 306 (447)
Q Consensus 230 l~~l~~~~g~~li~DEv~~g~g~~g~~~~~---~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 306 (447)
|.++|++||+++|+||+|..+ ..+..+.- ...+....+.++||. +++++++|++++++++++.+... .
T Consensus 205 l~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~~-------~ 275 (417)
T 3g7q_A 205 LDRLANQHNIPLVIDNAYGVP-FPGIIFSEARPLWNPNIILCMSLSKL-GLPGSRCGIIIANDKTITAIANM-------N 275 (417)
T ss_dssp HHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESGGG-TCTTSCCEEEECCHHHHHHHHHH-------H
T ss_pred HHHHHHHcCCEEEEeCCCccc-cccccccccccCCCCCEEEEEechhc-cCCCcceEEEEeCHHHHHHHHHh-------h
Confidence 999999999999999999743 22111110 011111224578994 44448999999999998887632 2
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHh-----hhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEEEEEeecCCCCCCC
Q 013204 307 HGFTYSGHPVSCAVAIEALKIYK-----ERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFADNKSPNEP 380 (447)
Q Consensus 307 ~~~t~~~~~~~~~aa~a~l~~~~-----~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~~~ 380 (447)
+..++..++++++++.+.++... .+.+.+.++++.+.+.+.|++. ...++.......|.++.+.+.....
T Consensus 276 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~---- 351 (417)
T 3g7q_A 276 GIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLPI---- 351 (417)
T ss_dssp HHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTCSS----
T ss_pred cceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcCCCCC----
Confidence 33466677888888877775321 1124456666777777777663 4333322233456677777754211
Q ss_pred CCCCcchHHHHHHHHHHcCceEEeeC--------------CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 381 FPPEWGIGAYFGAQCEKHGMLVRVSG--------------DNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 381 ~~~~~~~~~~~~~~l~~~Gi~~~~~g--------------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
....+.+.|.++||.+.++. +.+||+++. ++++|++++++|+++++++.+
T Consensus 352 ------~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 352 ------TTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPDKIEAGVKILAEEIERAWR 415 (417)
T ss_dssp ------CHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CHHHHHHHHHHHHHHHHHHHh
Confidence 14568888999999998742 369999764 999999999999999987654
No 126
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.92 E-value=4.7e-24 Score=213.24 Aligned_cols=370 Identities=14% Similarity=0.110 Sum_probs=208.6
Q ss_pred cCcEEEe-CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEe
Q 013204 23 EGSYVYD-VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFT 101 (447)
Q Consensus 23 ~g~~~~d-~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~ 101 (447)
+|..+++ ..|+.||||.++.++ |+|.+++.+++...... ....+...++++++++++ +.++++|+
T Consensus 30 ~g~~~~~~~~~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~~~----y~~~~~~~~l~~~la~~~---~~~~v~~t 95 (467)
T 2oqx_A 30 SGMNPFLLDSEDVFIDLLTDSGT-------GAVTQSMQAAMMRGDEA----YSGSRSYYALAESVKNIF---GYQYTIPT 95 (467)
T ss_dssp TTSCGGGSCGGGCSEECSCCSSC-------SCCCHHHHHHTTSCCCC----SSSCHHHHHHHHHHHHHH---CCSEEEEE
T ss_pred cCCCceeccCCCeeEecccCCCc-------HHHHHHHHHHhccCcce----eccCchhHHHHHHHHHHh---CcCcEEEc
Confidence 3443443 236789999876532 88999998887643221 124556788999999997 45799999
Q ss_pred CChhhHHHHHHHHHHHHH-HhcCCCCcceEEEEcCCCccchhhhhcc-cCCccccCCCCCCCCcceecCCCCcccCCCCC
Q 013204 102 NSGSEANDTQVKLVWYYN-NALGRPNKKKFIARQKSYHGSTLIAASL-SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPG 179 (447)
Q Consensus 102 ~sGseA~~~Al~~~~~~~-~~~~~~~~~~vi~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (447)
+||++|++.|+++++..+ ..+|.++++.|+.. .||+.+...... .+..... ..... .+ ..+.+..+.
T Consensus 96 ~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~-~~~~~--~~-~~~~~~~~~----- 164 (467)
T 2oqx_A 96 HQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFS--NYFFDTTQGHSQINGCTVRN-VYIKE--AF-DTGVRYDFK----- 164 (467)
T ss_dssp C--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEE--SSCCHHHHHHHHHTTCEEEE-CBCTT--TT-CTTSCCTTT-----
T ss_pred CCcHHHHHHHHHHHhccccccCCCCccceEEec--ccccccchhhhhccCcceee-ccccc--cc-cCCCCCCcc-----
Confidence 999999999999886431 11131111446554 588664322221 1111110 00000 00 000000000
Q ss_pred CChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC----------
Q 013204 180 ETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA---------- 249 (447)
Q Consensus 180 ~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g---------- 249 (447)
. ..++++|++.+.....+++++|+++++++.+|..+++.+++++|+++|++||++||+|++|..
T Consensus 165 ~------~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~ 238 (467)
T 2oqx_A 165 G------NFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQRE 238 (467)
T ss_dssp T------CBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHC
T ss_pred C------CcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhccccc
Confidence 0 012478888887533235788999988777544777899999999999999999999965532
Q ss_pred CCccccccc-cc--cCCCCCCee--eecccCCCcccce-eEEEeChh-HHHHhhhccCCCCccCcCCCCCCcHHHHHHHH
Q 013204 250 FGRLGTMFG-CD--KYSIKPDLV--SFAKALSSAYMPI-GAILVSPE-VSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAI 322 (447)
Q Consensus 250 ~g~~g~~~~-~~--~~~~~~d~v--~~sK~l~gg~~~~-g~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~ 322 (447)
.+..|.... +. .+ ..+|++ +++|.++. |+ |+++++++ +++.+..............++........+++
T Consensus 239 ~~~~g~~~~~~~~~~~-~~~d~~~~s~sK~~g~---~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 314 (467)
T 2oqx_A 239 AEYKDWTIEQITRETY-KYADMLAMSAKKDAMV---PMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERL 314 (467)
T ss_dssp GGGTTSCHHHHHHHHG-GGCSEEEEESSSTTCC---SSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHH
T ss_pred ccccCccHHHHhhhhh-ccCCeEEEecccccCC---CCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHH
Confidence 123332111 10 00 114544 56788853 43 55667666 44333211000000001112222222222222
Q ss_pred -HHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeec--CCCCCCCCCCCcch-HHHHHHHH-HH
Q 013204 323 -EALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFAD--NKSPNEPFPPEWGI-GAYFGAQC-EK 397 (447)
Q Consensus 323 -a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~~~~~~~-~~~~~~~l-~~ 397 (447)
..++...+++..++..++.+++++.|+++ +.++. . ..+.++.+.+.. ..... ..+ ...+.+.| .+
T Consensus 315 ~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~--~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~L~~~ 384 (467)
T 2oqx_A 315 AVGLYDGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ-Q--AGGHAAFVDAGKLLPHIPA------DQFPAQALACELYKV 384 (467)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCEE-E--ECSSCEEEEHHHHSTTSCG------GGCHHHHHHHHHHHH
T ss_pred HHhhHhhhhHHHHHHHHHHHHHHHHHHHHC-CCeee-c--CCceEEEEechhhcccCCc------ccccHHHHHHHHHHh
Confidence 22232112234566677888899998876 44444 3 234455556532 11010 012 44567888 88
Q ss_pred cCceEEeeC------------------CEEEEecCCC-CCHHHHHHHHHHHHHHHHHHH
Q 013204 398 HGMLVRVSG------------------DNIMMSPPFI-MSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 398 ~Gi~~~~~g------------------~~iR~~~~~~-~t~e~i~~~~~~l~~~l~~~~ 437 (447)
+||.+.+++ +.+|++++.. +|+++|++++++|++++++++
T Consensus 385 ~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 385 AGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp HCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred cCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 999988743 5799999988 999999999999999987643
No 127
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.91 E-value=3.2e-23 Score=200.09 Aligned_cols=333 Identities=14% Similarity=0.182 Sum_probs=216.8
Q ss_pred EEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc-CCCCeEEEeCChhhHHHHHHH
Q 013204 35 YLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA-SKMAKVFFTNSGSEANDTQVK 113 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~v~~~~sGseA~~~Al~ 113 (447)
++||..| +++ .+|+|++++.+++. ..+. ....+...++++++++++.. ...+++++++||++|++.+++
T Consensus 5 ~~~~~~g----p~~-~~~~v~~a~~~~~~---~~~~--~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~ 74 (366)
T 1m32_A 5 YLLLTPG----PLT-TSRTVKEAMLFDSC---TWDD--DYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLG 74 (366)
T ss_dssp CEECSSS----SCC-CCHHHHHTTCCCCC---TTSH--HHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHH
T ss_pred cccccCC----CcC-CCHHHHHHHhhhhc---CCCH--HHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHH
Confidence 5777655 333 78999999877432 1111 01125567888999988741 123479999999999999999
Q ss_pred HHHHHHHhcCCCCcceEEEEcCCCccchh-hhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHH
Q 013204 114 LVWYYNNALGRPNKKKFIARQKSYHGSTL-IAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192 (447)
Q Consensus 114 ~~~~~~~~~~~~~~~~vi~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (447)
.++ .++++|+++++.||+... ......|... ..++.+..+. .++++
T Consensus 75 ~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~-------------~d~~~ 121 (366)
T 1m32_A 75 SAL--------GPQDKVLIVSNGAYGARMVEMAGLMGIAH------------HAYDCGEVAR-------------PDVQA 121 (366)
T ss_dssp HSC--------CTTCCEEEEESSHHHHHHHHHHHHHTCCE------------EEEECCTTSC-------------CCHHH
T ss_pred Hhc--------CCCCeEEEEeCCCccHHHHHHHHHhCCce------------EEEeCCCCCC-------------CCHHH
Confidence 763 234678888888887632 2222122211 1112111000 11477
Q ss_pred HHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--
Q 013204 193 LEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS-- 270 (447)
Q Consensus 193 le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~-- 270 (447)
|++.+... ..+++|++...++.+|.+.+ +++|.++|++||+++|+||+|+ ++..+ .... ...+|+++
T Consensus 122 l~~~l~~~--~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~--~~~~--~~~~di~~~s 190 (366)
T 1m32_A 122 IDAILNAD--PTISHIAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIP--MDIA--ALHIDYLISS 190 (366)
T ss_dssp HHHHHHHC--TTCCEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCTT--TTTCSEEEEE
T ss_pred HHHHHhcC--CCeEEEEEecccCCcceecC----HHHHHHHHHHcCCEEEEECCcc-ccCcC--cccc--ccCccEEEec
Confidence 88887642 12445555555556676766 8999999999999999999997 44432 1122 23478775
Q ss_pred ecccCCCcccceeEEEeChhHHHHhhhccCCCCccC--------------cCCCCCCcHHHHHHHHHHHHHHhhh----c
Q 013204 271 FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFS--------------HGFTYSGHPVSCAVAIEALKIYKER----N 332 (447)
Q Consensus 271 ~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------------~~~t~~~~~~~~~aa~a~l~~~~~~----~ 332 (447)
++|+++++ .++|++++++++++.+.... ..+. ....++.++.+++++.++++.+.+. +
T Consensus 191 ~~K~~~~~-~g~G~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~ 266 (366)
T 1m32_A 191 ANKCIQGV-PGFAFVIAREQKLAACKGHS---RSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAA 266 (366)
T ss_dssp SSSTTCCC-SSEEEEEEEHHHHTTCTTCC---SCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CcccccCC-CceEEEEECHHHHHhhcCCC---CCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhH
Confidence 57999776 57899999999887765311 0100 1113567888888888888876543 4
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----CC
Q 013204 333 IVEQVNKIAPKFQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----GD 407 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----g~ 407 (447)
..++++++.+++++.|+++ +..+.... ...+.++.+.+.+.... ....+.+.|.++||.+.++ .+
T Consensus 267 ~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~~~~~~~~ 336 (366)
T 1m32_A 267 RHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSPEDPQY---------RFSEFYRRLKEQGFVIYPGKVSQSD 336 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCCCTTC---------CHHHHHHHHHHTTEECEECCCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHC-CCeeccCchhcCceEEEEEcCccCCC---------CHHHHHHHHHHCCEEEECCcCCCCC
Confidence 6778888888998888876 33322211 12344667776531000 1456888999999999875 35
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 408 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+|++++..++++++++++++|++++++
T Consensus 337 ~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 337 CFRIGNIGEVYAADITALLTAIRTAMYW 364 (366)
T ss_dssp EEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 7999999889999999999999988654
No 128
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.91 E-value=1.1e-23 Score=207.85 Aligned_cols=306 Identities=13% Similarity=0.071 Sum_probs=199.7
Q ss_pred ChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH--HHHHHHHHHHHhcCCCC--------cceEEEEcCCCccchhhhh
Q 013204 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND--TQVKLVWYYNNALGRPN--------KKKFIARQKSYHGSTLIAA 145 (447)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~--~Al~~~~~~~~~~~~~~--------~~~vi~~~~~yhg~~~~~~ 145 (447)
.....++.+.+++++ ..+++++++++|+++|+. .+++.+.. +.++ +++|++.+++|+++.....
T Consensus 69 ~~g~~~lr~~ia~~~-~~~~~~i~~t~G~~~al~~~~~~~~l~~-----~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~ 142 (423)
T 3ez1_A 69 VAGLPSARALFAGYL-DVKAENVLVWNNSSLELQGLVLTFALLH-----GVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQ 142 (423)
T ss_dssp TTCCHHHHHHHHHHT-TSCGGGEEECSSCHHHHHHHHHHHHHHT-----CCTTCSSCGGGGCCEEEEEESCCHHHHHHHH
T ss_pred CCChHHHHHHHHHHh-CCChhhEEEeCCcHHHHHHHHHHHHHhc-----cCCCccccccCCCCEEEEcCCCcHHHHHHHH
Confidence 344578888898887 356679999999999997 78776541 0022 4789999999999865544
Q ss_pred cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEcc-ccCCCCCccCCh
Q 013204 146 SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEP-VIGAGGVIPPPA 224 (447)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~ep-v~~~~G~~~~~~ 224 (447)
..+.... .++.... + .++++|++.+.. ..++++|+++| .++.+|. ..+.
T Consensus 143 ~~g~~~~-------------~v~~~~~------g--------~d~~~l~~~l~~--~~~~~~v~~~~~~~NPtG~-~~~~ 192 (423)
T 3ez1_A 143 TLGFELL-------------TVDMQSD------G--------PDVDAVERLAGT--DPSVKGILFVPTYSNPGGE-TISL 192 (423)
T ss_dssp HHTCEEE-------------EEEEETT------E--------ECHHHHHHHHHS--CTTEEEEEECSSSCTTTCC-CCCH
T ss_pred HcCCEEE-------------eccCCCC------C--------CCHHHHHHHHhh--CCCceEEEECCCCCCCCCc-CCCH
Confidence 4332111 1111000 0 114778887752 23577887775 4555664 4567
Q ss_pred hHHHHHHHHH-HhcCCEEEEehhhcCCCccc---ccc-c-cc------cCCCCCCeeeecccCCCcccceeEEEeChhHH
Q 013204 225 TYFEKVQAVV-KKYDILFIADEVICAFGRLG---TMF-G-CD------KYSIKPDLVSFAKALSSAYMPIGAILVSPEVS 292 (447)
Q Consensus 225 ~~l~~l~~l~-~~~g~~li~DEv~~g~g~~g---~~~-~-~~------~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~ 292 (447)
+.+++|+++| ++||+++|+||+|+.+...+ ... . .. ..+....+.+|||.+..| +++|+++++++++
T Consensus 193 ~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G-~r~G~~~~~~~~~ 271 (423)
T 3ez1_A 193 EKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAG-AGLGFVASSEDNI 271 (423)
T ss_dssp HHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSS-SSCEEEEECHHHH
T ss_pred HHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCC-cceEEEEeCHHHH
Confidence 7799999999 99999999999998532222 110 1 11 112222355789985555 8999999999998
Q ss_pred HHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH-Hh-----hhcHHHHHHHHHHHHHHhHhh-ccCCC-ceee-Eeee
Q 013204 293 EVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI-YK-----ERNIVEQVNKIAPKFQDGVKA-FSDSP-IIGE-IRGT 363 (447)
Q Consensus 293 ~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~-~~-----~~~~~~~~~~~~~~l~~~L~~-l~~~~-~~~~-~~~~ 363 (447)
+.+... .+..+++.+++++.++.++++. .. -.+..+.++++.+.+.+.|.+ +...+ .+.. ....
T Consensus 272 ~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~ 344 (423)
T 3ez1_A 272 RWLSKY-------LGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKG 344 (423)
T ss_dssp HHHHHH-------HHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSB
T ss_pred HHHHHH-------HhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCc
Confidence 888632 2334677788888888777764 11 012233444455555555544 33333 2222 2344
Q ss_pred eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----------CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 364 GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----------GDNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 364 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----------g~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
|.++.+.+.... ...+.+.|.++||++.++ .+.+||+++.. ++++|++++++|+++
T Consensus 345 g~~~~~~~~~~~------------~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~ 411 (423)
T 3ez1_A 345 GYFISLDTAEPV------------ADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAMQVVAAC 411 (423)
T ss_dssp SSCEEEEESSSC------------HHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCc------------HHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHH
Confidence 667777775421 445788899999999872 25699998654 999999999999999
Q ss_pred HHHHHH
Q 013204 433 LKATEE 438 (447)
Q Consensus 433 l~~~~~ 438 (447)
++++..
T Consensus 412 l~~~~~ 417 (423)
T 3ez1_A 412 IRLATE 417 (423)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 129
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.91 E-value=5.4e-23 Score=201.90 Aligned_cols=325 Identities=14% Similarity=0.139 Sum_probs=212.8
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcce
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~ 129 (447)
.+|++.+++.+++.. ..+. ...+...++++++++.+.....+.+++++||++|++.+++.+. .++++
T Consensus 24 ~~~~v~~a~~~~~~~--~~~~---~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~--------~~gd~ 90 (411)
T 3nnk_A 24 ADPRVLRAMSSQLIG--QYDP---AMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI--------RPGDK 90 (411)
T ss_dssp CCHHHHHHHTSCCCC--TTCH---HHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC--------CTTCE
T ss_pred CCHHHHHHhhccccc--cccH---HHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc--------CCCCE
Confidence 578888777654311 1110 1124557888888888753333348899999999999999773 34588
Q ss_pred EEEEcCCCccch-hhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEE
Q 013204 130 FIARQKSYHGST-LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAF 208 (447)
Q Consensus 130 vi~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~v 208 (447)
|++.+++||+.. .......|... ..++.+..+. .++++|++.+... ++++|
T Consensus 91 Vl~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~-------------~d~~~l~~~i~~~---~~~~v 142 (411)
T 3nnk_A 91 VLVPVFGRFGHLLCEIARRCRAEV------------HTIEVPWGEV-------------FTPDQVEDAVKRI---RPRLL 142 (411)
T ss_dssp EEEEECSHHHHHHHHHHHHTTCEE------------EEEECCTTCC-------------CCHHHHHHHHHHH---CCSEE
T ss_pred EEEecCCchHHHHHHHHHHcCCeE------------EEEecCCCCC-------------CCHHHHHHHHhhC---CCeEE
Confidence 999999999842 22222222211 1122211110 0147788887642 45688
Q ss_pred EEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCcccceeEEE
Q 013204 209 IAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSAYMPIGAIL 286 (447)
Q Consensus 209 i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~~~g~~~ 286 (447)
+++++++.+|.+.+ +++|.++|++||+++|+||+++ ++.. .+....+ .+|++++ +|++.++ .++|+++
T Consensus 143 ~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~--~~~~~~~--~~d~~~~s~~K~l~~~-~g~g~~~ 212 (411)
T 3nnk_A 143 LTVQGDTSTTMLQP----LAELGEICRRYDALFYTDATAS-LGGN--PLETDVW--GLDAVSAGMQKCLGGP-SGTSPIT 212 (411)
T ss_dssp EEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-BTTB--CCCTTTT--TCSEEECCSTTTTCCC-SSEEEEE
T ss_pred EEeCCCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-cCCc--ccchhcc--CCcEEEecCccccCCC-CceEEEE
Confidence 88888888888766 8899999999999999999987 3322 2222222 3677654 5888777 5899999
Q ss_pred eChhHHHHhhhcc----------------CCCCc-------------cCcCCCCCCcHHHHHHHHHHHHHHhhh---cHH
Q 013204 287 VSPEVSEVIHSQS----------------NTLGS-------------FSHGFTYSGHPVSCAVAIEALKIYKER---NIV 334 (447)
Q Consensus 287 ~~~~~~~~~~~~~----------------~~~~~-------------~~~~~t~~~~~~~~~aa~a~l~~~~~~---~~~ 334 (447)
+++++++.+.... ..... .......+.+..+++++.++++.+.+. +..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~ 292 (411)
T 3nnk_A 213 LSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGI 292 (411)
T ss_dssp ECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred ECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999988876421 00000 001123455777888777888876543 566
Q ss_pred HHHHHHHHHHHHhHhhccCCCceee-EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee-----CC
Q 013204 335 EQVNKIAPKFQDGVKAFSDSPIIGE-IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS-----GD 407 (447)
Q Consensus 335 ~~~~~~~~~l~~~L~~l~~~~~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----g~ 407 (447)
++++++.+++.+.|+++ ...+... ....+.++.+.+++.. ....+.+.|+++ ||.+.++ ++
T Consensus 293 ~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~l~~~~gi~v~~g~~~~~~~ 360 (411)
T 3nnk_A 293 ARHKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVVIPQGI-----------NGDQARKLMLEDFGIEIGTSFGPLHGK 360 (411)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEECCTTC-----------CHHHHHHHHHHHHSEEEEECCGGGTTT
T ss_pred HHHHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEECCCCC-----------CHHHHHHHHHHhcCeEEeCccCCCCCC
Confidence 78888888999988876 3222211 1223556666654321 145678888876 9999874 36
Q ss_pred EEEEec-CCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSP-PFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 408 ~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
.+|+++ ++.+++++|++++++|+++++++.
T Consensus 361 ~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 391 (411)
T 3nnk_A 361 VWRIGTMGYNARKDCVMTTLSALEAVLNYLK 391 (411)
T ss_dssp EEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeCccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 799998 777899999999999999997653
No 130
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.91 E-value=1.1e-22 Score=198.46 Aligned_cols=338 Identities=12% Similarity=0.073 Sum_probs=221.1
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~ 110 (447)
+...|+|..+. ++.+|++++++.+.+... .+ ....+...++.+++++++. .+.+++++++||++|+..
T Consensus 7 ~~~~yl~~~~~------~~~~~~v~~a~~~~~~~~-~~----~~~~~~~~~l~~~la~~~g-~~~~~v~~t~g~t~a~~~ 74 (392)
T 2z9v_A 7 ADPVITLTAGP------VNAYPEVLRGLGRTVLYD-YD----PAFQLLYEKVVDKAQKAMR-LSNKPVILHGEPVLGLEA 74 (392)
T ss_dssp SCCSEECSSSC------CCCCHHHHHHTTSCCCCT-TS----HHHHHHHHHHHHHHHHHTT-CSSCCEEESSCTHHHHHH
T ss_pred CCcceeecCCC------cCCCHHHHHHHhcccccc-cc----HHHHHHHHHHHHHHHHHhC-CCCCEEEEeCCchHHHHH
Confidence 34578886432 357899999988766531 11 1123456788899998874 345799999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh-cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA-SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (447)
+++.+. .++++|++.+++||+.....+ ...|.. +..++.+..+. .+
T Consensus 75 ~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~-------------~d 121 (392)
T 2z9v_A 75 AAASLI--------SPDDVVLNLASGVYGKGFGYWAKRYSPH------------LLEIEVPYNEA-------------ID 121 (392)
T ss_dssp HHHHHC--------CTTCCEEEEESSHHHHHHHHHHHHHCSC------------EEEEECCTTSC-------------CC
T ss_pred HHHHhc--------CCCCEEEEecCCcccHHHHHHHHHcCCc------------eEEeeCCCCCC-------------CC
Confidence 999763 334789999999988632211 111211 11122211000 11
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV 269 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v 269 (447)
++++++.+... +++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|.. ...... ..+|++
T Consensus 122 ~~~l~~~l~~~--~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~--~~~~~~--~~~d~~ 190 (392)
T 2z9v_A 122 PQAVADMLKAH--PEITVVSVCHHDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS-FGGM--KTHPED--CKADIY 190 (392)
T ss_dssp HHHHHHHHHHC--TTCCEEEEESEEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTB--SCCGGG--GTCSEE
T ss_pred HHHHHHHHhcC--CCCcEEEEeccCCCCceecc----HHHHHHHHHHcCCeEEEEcccc-cCCc--cccccc--ccceEE
Confidence 47788877541 24567888888888887776 8999999999999999999997 4432 112222 246877
Q ss_pred ee--cccCCCcccceeEEEeChhHHHHhhhcc-----CCC------Cc--cCcCCCCCCcHHHHHHHHHHHHHHhhh---
Q 013204 270 SF--AKALSSAYMPIGAILVSPEVSEVIHSQS-----NTL------GS--FSHGFTYSGHPVSCAVAIEALKIYKER--- 331 (447)
Q Consensus 270 ~~--sK~l~gg~~~~g~~~~~~~~~~~~~~~~-----~~~------~~--~~~~~t~~~~~~~~~aa~a~l~~~~~~--- 331 (447)
++ +|.++++ .++|++++++++++.+.... ... .. .......+.++.+++++.++++.+.+.
T Consensus 191 ~~s~sK~~~~~-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~ 269 (392)
T 2z9v_A 191 VTGPNKCLGAP-PGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPE 269 (392)
T ss_dssp EECSSSTTCCC-SCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred EecCcccccCC-CceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHH
Confidence 64 6988876 57899999999888775310 000 00 001123345677777777788766543
Q ss_pred cHHHHHHHHHHHHHHhHhhccCCCcee-e-EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee---
Q 013204 332 NIVEQVNKIAPKFQDGVKAFSDSPIIG-E-IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS--- 405 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l~~~~~~~-~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~--- 405 (447)
+..++++++.+++++.|+++ +..+.. . ....+.++.+.+.... ....+.+.|.++ ||.+.++
T Consensus 270 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~~gi~v~~g~~~ 337 (392)
T 2z9v_A 270 AVWARHALTAKAMRAGVTAM-GLSVWAASDSIASPTTTAVRTPDGV-----------DEKALRQAARARYGVVFSSGRGE 337 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCTTEEEEECCTTC-----------CHHHHHHHHHHHHCEECEECCGG
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCeeccCCccccCCceEEEECCCCC-----------CHHHHHHHHHhcCCEEEecCCCC
Confidence 45678888888888888876 333221 1 0113555566654211 145688889887 9999875
Q ss_pred --CCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHH
Q 013204 406 --GDNIMMSPPF-IMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 406 --g~~iR~~~~~-~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
.+.+|+++.. .++++++++++++|++++++++
T Consensus 338 ~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 338 TLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAG 372 (392)
T ss_dssp GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcC
Confidence 3679999643 7899999999999999998764
No 131
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.91 E-value=1.2e-22 Score=197.16 Aligned_cols=318 Identities=15% Similarity=0.147 Sum_probs=197.8
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCC-CeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKM-AKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~ 128 (447)
.+|++++++.+++.. ..+. ...+...++++++++.+..... +.+++++||++|++.+++.+. .+++
T Consensus 30 ~~~~v~~a~~~~~~~--~~~~---~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~--------~~gd 96 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY--FRTT---EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF--------TKKD 96 (376)
T ss_dssp CCHHHHHHHTSCCCC--CSSH---HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC--------CTTC
T ss_pred CcHHHHHHhcCCCCC--CCCH---HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc--------CCCC
Confidence 478888887665432 1111 1224556778888888743222 345558899999999999764 3457
Q ss_pred eEEEEcCCCccchhhhh-cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEE
Q 013204 129 KFIARQKSYHGSTLIAA-SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAA 207 (447)
Q Consensus 129 ~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~ 207 (447)
+||+.++.||+...... ...+... ..++.+..+. . +++++++.+. .++++
T Consensus 97 ~vi~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~-----~--------d~~~l~~~~~----~~~~~ 147 (376)
T 3f0h_A 97 KVLVIDGGSFGHRFVQLCEIHEIPY------------VALKLEHGKK-----L--------TKEKLYEYDN----QNFTG 147 (376)
T ss_dssp CEEEEESSHHHHHHHHHHHHTTCCE------------EEEECCTTCC-----C--------CHHHHHTTTT----SCCCE
T ss_pred eEEEEeCChhhHHHHHHHHHcCCce------------EEEeCCCCCC-----C--------CHHHHHHhhc----cCceE
Confidence 89999998888643311 1112111 1122211110 0 1356665432 35677
Q ss_pred EEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccceeEE
Q 013204 208 FIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPIGAI 285 (447)
Q Consensus 208 vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~g~~ 285 (447)
|+++++++.+|.+.+ +++|+++|++||+++|+||+|+.+++. +..+.++ .|++ +++|.++++ .++|++
T Consensus 148 v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~--~d~~~~s~~K~l~~~-~G~g~~ 217 (376)
T 3f0h_A 148 LLVNVDETSTAVLYD----TMMIGEFCKKNNMFFVCDCVSAFLADP---FNMNECG--ADVMITGSQKVLACP-PGISVI 217 (376)
T ss_dssp EEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSC---CCHHHHT--CSEEEEETTTTTCCC-SSCEEE
T ss_pred EEEecccCCcceecC----HHHHHHHHHHcCCEEEEEcCccccCcc---ccccccC--ccEEEecCcccccCC-CceEEE
Confidence 888888888887776 999999999999999999999854332 2233334 3555 456999866 688999
Q ss_pred EeChhHHHHhhhccCCCCc----------cCcCCCCCCcHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHhHhhc
Q 013204 286 LVSPEVSEVIHSQSNTLGS----------FSHGFTYSGHPVSCAVAIEALKIYKER----NIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~----------~~~~~t~~~~~~~~~aa~a~l~~~~~~----~~~~~~~~~~~~l~~~L~~l 351 (447)
++++++++.+......... ......++.+..+++++.++++.+.+. +..++.+++.+++++.|+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 297 (376)
T 3f0h_A 218 VLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL 297 (376)
T ss_dssp EECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred EECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999998887632110000 001123445555656677778766554 34455566666666666654
Q ss_pred cCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEeeC-----CEEEEecCCCCCHHHHHH
Q 013204 352 SDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVSG-----DNIMMSPPFIMSPEEVDE 424 (447)
Q Consensus 352 ~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~g-----~~iR~~~~~~~t~e~i~~ 424 (447)
++.... .....++.+.. ... ....+.+.|+++ ||.+.++. +.+|++++..+|++++++
T Consensus 298 ---~~~~~~~~~~~~~~~~~~-~~~-----------~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~ 362 (376)
T 3f0h_A 298 ---PFELVSESPANGVTSVHP-TTA-----------NAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTT 362 (376)
T ss_dssp ---SEEECCSSBBTTEEEEEE-SSS-----------CHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHH
T ss_pred ---CCccCccccCceEEEEeC-CCC-----------CHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHH
Confidence 211111 11222222221 111 145688889988 99988752 569999999999999999
Q ss_pred HHHHHHHHHH
Q 013204 425 LISKYGKALK 434 (447)
Q Consensus 425 ~~~~l~~~l~ 434 (447)
++++|+++++
T Consensus 363 ~~~~l~~~l~ 372 (376)
T 3f0h_A 363 LVNAFKDLQK 372 (376)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 132
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.91 E-value=1.3e-22 Score=196.95 Aligned_cols=339 Identities=14% Similarity=0.131 Sum_probs=213.0
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCccc----ccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYH----SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
.|+|+.++ +..+|++.+++.+.+.+..... .......+...++++++++++. .+.+++++++||++|++
T Consensus 2 iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~i~~~~g~~~a~~ 74 (382)
T 4hvk_A 2 AYFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVN-GGGGTVVFTSGATEANN 74 (382)
T ss_dssp CBCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTT-CTTEEEEEESSHHHHHH
T ss_pred EeecCCCc------CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcC-CCcCeEEEECCchHHHH
Confidence 37787554 3578999999999987632211 1001123445678888888873 45678999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcc--cCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASL--SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
.+++.+...... +++.|++.++.|++........ .|... ..++....+.
T Consensus 75 ~~~~~~~~~~~~----~gd~vi~~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~------------- 125 (382)
T 4hvk_A 75 LAIIGYAMRNAR----KGKHILVSAVEHMSVINPAKFLQKQGFEV------------EYIPVGKYGE------------- 125 (382)
T ss_dssp HHHHHHHHHHGG----GCCEEEEETTCCHHHHHHHHHHHHTTCEE------------EEECBCTTSC-------------
T ss_pred HHHHHhhhhhcC----CCCEEEECCCCcHHHHHHHHHHHhcCCEE------------EEeccCCCCC-------------
Confidence 999976432111 2468888888888765433221 12111 1122111100
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPD 267 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d 267 (447)
.++++|++.+. +++++|+++++++.+|.+.+ +++|.++|++||+ +|+||+|+ ++.. ....... .+|
T Consensus 126 ~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~--~~~~~~~--~~d 191 (382)
T 4hvk_A 126 VDVSFIDQKLR----DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI--EVDVEKI--GAD 191 (382)
T ss_dssp BCHHHHHHHCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB--CCCHHHH--TCS
T ss_pred cCHHHHHHHhc----cCceEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC--CCCchhc--CCC
Confidence 01367777664 35789999999888888776 9999999999999 99999986 4322 1112222 357
Q ss_pred eee--ecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHHHHHH
Q 013204 268 LVS--FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNKIAPK 343 (447)
Q Consensus 268 ~v~--~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~~~~~ 343 (447)
+++ ++|.++ + .++|+++++++. .+..............+.+.++.+++++.++++.+.+ ++..++.+++.++
T Consensus 192 ~~~~s~~K~~g-~-~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~ 267 (382)
T 4hvk_A 192 MLTISSNDIYG-P-KGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDR 267 (382)
T ss_dssp EEEEESGGGTS-C-TTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeHHHhcC-C-CceEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 775 459543 3 468888887764 1111000000001112344567777777777775543 4566777778888
Q ss_pred HHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----------------
Q 013204 344 FQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----------------- 405 (447)
Q Consensus 344 l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------------- 405 (447)
+.+.|++++...+.... ...+.++.+.+.... ...+.+.|.++||.+.++
T Consensus 268 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~ 335 (382)
T 4hvk_A 268 IIDNVLKIEESYLNGHPEKRLPNNVNVRFSYIE------------GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMAC 335 (382)
T ss_dssp HHHHHTTSTTEEECSCSSSBCTTEEEEEETTCC------------HHHHHHHHHHTTCBCBCC--------CCCHHHHHT
T ss_pred HHHHHhcCCCeEEeCCccccCCCEEEEEECCCC------------HHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHc
Confidence 88888765322111110 111234455543211 456888999999998864
Q ss_pred -------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 406 -------GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 406 -------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.+.+|++++..+|++++++++++|+++++++++
T Consensus 336 g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~ 375 (382)
T 4hvk_A 336 GLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp TCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 357999999889999999999999999988765
No 133
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.91 E-value=2.5e-23 Score=203.50 Aligned_cols=341 Identities=12% Similarity=0.044 Sum_probs=205.7
Q ss_pred CCEEEecCCccccccCCCCC--HHHHHHHHH-HHhcCC-cccccCcCCChHHHHHHHHHHHhcCc--C---CCC--eEEE
Q 013204 32 GKKYLDSLAGLWCTALGGSE--PRLVAAATA-QLNTLP-FYHSFWNRTTKPSLDLAKELLEMFTA--S---KMA--KVFF 100 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~--p~v~~a~~~-~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~--~---~~~--~v~~ 100 (447)
...++||+.|.+..+.|+.+ |++.+++.+ .+.+.. ..+. +.....++.+.+++++.. . +++ ++++
T Consensus 25 ~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~----~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~ 100 (397)
T 3fsl_A 25 RSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYL----PMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQ 100 (397)
T ss_dssp CSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCC----CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCC----CCCchHHHHHHHHHHHhcCCcccccccceEEEE
Confidence 34689999886555566655 899999999 886522 1222 112234455555555421 1 456 8999
Q ss_pred eCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC--CCcccCCCC
Q 013204 101 TNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC--PHYWRYAHP 178 (447)
Q Consensus 101 ~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 178 (447)
++||++|++.++++.... .++++|++.+++|++........+... ..++. ++.+.
T Consensus 101 t~g~~~a~~~~~~~~~~~------~~gd~vl~~~p~~~~~~~~~~~~g~~~-------------~~~~~~~~~~~~---- 157 (397)
T 3fsl_A 101 TLGGSGALKVGADFLKRY------FPESGVWVSDPTWENHVAIFAGAGFEV-------------STYPWYDEATNG---- 157 (397)
T ss_dssp ESHHHHHHHHHHHHHHHH------CTTCCEEEESSCCHHHHHHHHHTTCCE-------------EEECCEETTTTE----
T ss_pred cCCcHHHHHHHHHHHHhc------CCCCeEEEeCCCchhHHHHHHHcCCce-------------EEEeeeeccCCc----
Confidence 999999999998754322 345789999999998865554433221 11111 00000
Q ss_pred CCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccc--cc
Q 013204 179 GETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG--TM 256 (447)
Q Consensus 179 ~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g--~~ 256 (447)
.+++++++.+.+.. +.+++++++..++.+|. ..+.+.+++|.++|++||+++|+||+|+++...+ ..
T Consensus 158 ---------~d~~~l~~~l~~~~-~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~ 226 (397)
T 3fsl_A 158 ---------VRFNDLLATLKTLQ-AGSIVLLHPCCHNPTGA-DLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDA 226 (397)
T ss_dssp ---------ECHHHHHHHHTTCC-TTCEEEECSSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGG
T ss_pred ---------CcHHHHHHHHHhCC-CCCEEEEeCCCCCCCCc-CCCHHHHHHHHHHHHhCCEEEEEecCchhhccCccccc
Confidence 01477888776533 34556666666666664 5677889999999999999999999999886542 11
Q ss_pred cccccC-CCCCC---eeeecccCCCcccceeEEEe---ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH-
Q 013204 257 FGCDKY-SIKPD---LVSFAKALSSAYMPIGAILV---SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY- 328 (447)
Q Consensus 257 ~~~~~~-~~~~d---~v~~sK~l~gg~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~- 328 (447)
.....+ +..++ +.++||.++.+++|+|++++ ++++++.+.... +......+...+.+++.++.+.++..
T Consensus 227 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~ 303 (397)
T 3fsl_A 227 YAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQL---KATVRRNYSSPPNFGAQVVAAVLNDEA 303 (397)
T ss_dssp HHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHH---HHHHHTTTSSCCSHHHHHHHHHHTSHH
T ss_pred HHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHH---HHHHHhccCCCCHHHHHHHHHHhcCHH
Confidence 111111 12223 33689999843389999974 455555432110 01111223344556666555555421
Q ss_pred -------hhhcHHHHHHHHHHHHHHhHhhccCC-CceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCc
Q 013204 329 -------KERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGM 400 (447)
Q Consensus 329 -------~~~~~~~~~~~~~~~l~~~L~~l~~~-~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 400 (447)
.-++..++++++.+++.+.|+++... ++.......|.+..+.+. ...+.+.+.++||
T Consensus 304 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~gi 368 (397)
T 3fsl_A 304 LKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS---------------AAQVDRLREEFGV 368 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCC---------------HHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCC---------------HHHHHHHHHhCCE
Confidence 12345677788888888888876211 111111122334333321 2346667788999
Q ss_pred eEEeeCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 401 LVRVSGDNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 401 ~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
++.+++ |+++. .+++++|++++++|+++
T Consensus 369 ~v~~g~---Ris~~-~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 369 YLIASG---RMCVA-GLNTANVQRVAKAFAAV 396 (397)
T ss_dssp ECCTTC---EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred EECCCC---eEEEE-ecCHhhHHHHHHHHHhh
Confidence 998765 88864 44778899999999875
No 134
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.91 E-value=3.3e-22 Score=190.97 Aligned_cols=316 Identities=14% Similarity=0.129 Sum_probs=209.0
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~ 110 (447)
+.+.++||.++. +++| .+|.+.+++.+.......+ +.....++.+.+++++ +.+.+++++++|+++++..
T Consensus 14 ~~~~~i~l~~n~--~~~~-~~~~v~~a~~~~~~~~~~y------~~~~~~~lr~~la~~~-~~~~~~i~~t~G~~~~l~~ 83 (337)
T 3p1t_A 14 AAAQAVCLAFNE--NPEA-VEPRVQAAIAAAAARINRY------PFDAEPRVMRKLAEHF-SCPEDNLMLVRGIDECFDR 83 (337)
T ss_dssp CCCCCEECSSCC--CCSC-CCHHHHHHHHHHGGGTTSC------CTTHHHHHHHHHHHHH-TSCGGGEEEESHHHHHHHH
T ss_pred CCCCceEeeCCC--CCCC-CCHHHHHHHHHhhhhhccC------CCCchHHHHHHHHHHh-CcCHHHEEEeCCHHHHHHH
Confidence 456799998775 6777 6899999999988753222 3456788999999987 3466799999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
+++.+ + +++|++.+++|++........ |... ..++..+.+. . ++
T Consensus 84 ~~~~~---------~-gd~vl~~~p~~~~~~~~~~~~-g~~~------------~~v~~~~~~~-----~--------d~ 127 (337)
T 3p1t_A 84 ISAEF---------S-SMRFVTAWPGFDGYRARIAVS-GLRH------------FEIGLTDDLL-----L--------DP 127 (337)
T ss_dssp HHHHS---------T-TSEEEEESSSCSHHHHHHTTS-CCEE------------EEECBCTTSS-----B--------CH
T ss_pred HHHhc---------C-CCeEEEeCCCcHHHHHHHHHc-CCEE------------EEecCCCCCC-----C--------CH
Confidence 98865 2 368999999999876544332 2211 1122111100 0 02
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS 270 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~ 270 (447)
+++++. .+ +++++++..++.+|.+.+ ++++.++|+++++ +|+||+|.+|+..+... ....+....+.+
T Consensus 128 ~~l~~~-----~~-~~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~-~~~~~~~i~~~S 195 (337)
T 3p1t_A 128 NDLAQV-----SR-DDCVVLANPSNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRARG-LAYGENELVFRS 195 (337)
T ss_dssp HHHTTC-----CT-TEEEEEESSCTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSSSC-CCCBTTEEEEEE
T ss_pred HHHHhh-----cC-CCEEEEeCCCCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhccccccc-cccCCCEEEEee
Confidence 445442 22 345555555666677776 7889999999997 56699999775443211 111111112336
Q ss_pred ecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHhHh
Q 013204 271 FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQDGVK 349 (447)
Q Consensus 271 ~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~ 349 (447)
+||.++.+++++|++++++++++.+... ..+++.+++++.++.++++... -++..+++.++.+++.+.|+
T Consensus 196 ~sK~~g~~G~r~G~~~~~~~~~~~l~~~---------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 266 (337)
T 3p1t_A 196 FSKSYGLAGLRLGALFGPSELIAAMKRK---------QWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALR 266 (337)
T ss_dssp SSSTTCCTTTCCEEEECCHHHHHHHHTT---------SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhccCcchheEEEEeCHHHHHHHHhh---------cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899973338999999999999888631 1345677888887777776322 12344555666677777777
Q ss_pred hccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----CEEEEecCCCCCHHHHHH
Q 013204 350 AFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----DNIMMSPPFIMSPEEVDE 424 (447)
Q Consensus 350 ~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----~~iR~~~~~~~t~e~i~~ 424 (447)
++ +..+ ..+.|.++.+...+ ...+.+.|.++||.+.++. +.+|++.. +++++++
T Consensus 267 ~~-g~~~---~~~~~~~~~~~~~~--------------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~ 325 (337)
T 3p1t_A 267 GL-GYRV---ASSEANFVLVENAA--------------GERTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDR 325 (337)
T ss_dssp HT-TCCB---CCCSSSEEEEECTT--------------THHHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHH
T ss_pred HC-cCEE---CCCCCeEEEEEcCC--------------HHHHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHH
Confidence 65 2222 23456666555432 1346778889999999763 67999943 8999999
Q ss_pred HHHHHHHHHH
Q 013204 425 LISKYGKALK 434 (447)
Q Consensus 425 ~~~~l~~~l~ 434 (447)
++++|++.++
T Consensus 326 l~~al~~~~~ 335 (337)
T 3p1t_A 326 LLAALAEYSD 335 (337)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999987653
No 135
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.91 E-value=1.1e-22 Score=198.58 Aligned_cols=340 Identities=14% Similarity=0.106 Sum_probs=218.5
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCC-eEEEeCChhhHH
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMA-KVFFTNSGSEAN 108 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~v~~~~sGseA~ 108 (447)
.+|+.|+|..+. ++ .+|++.+++.+++... +. ....+...++.+++++++. .+.+ ++++++||++|+
T Consensus 16 ~~~~~~~~~~g~-----~~-~~~~v~~a~~~~~~~~--~~---~~~~~~~~~l~~~la~~~g-~~~~~~i~~~~g~t~a~ 83 (393)
T 2huf_A 16 VTPNKLLMGPGP-----SN-APQRVLDAMSRPILGH--LH---PETLKIMDDIKEGVRYLFQ-TNNIATFCLSASGHGGM 83 (393)
T ss_dssp CCCCCEECSSSC-----CC-CCHHHHHHTTSCCCCT--TS---HHHHHHHHHHHHHHHHHHT-CCCSEEEEESSCHHHHH
T ss_pred CCCCeEEecCCC-----CC-CCHHHHHHHHhhhccC--CC---HHHHHHHHHHHHHHHHHhC-CCCCcEEEEcCcHHHHH
Confidence 467777775433 22 6899998887765431 11 1123566788899998874 3443 799999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh-cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 109 DTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA-SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 109 ~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
+.+++.+. .++++|++.+++||+...... ...|.. +..++.+..+.
T Consensus 84 ~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~------------- 130 (393)
T 2huf_A 84 EATLCNLL--------EDGDVILIGHTGHWGDRSADMATRYGAD------------VRVVKSKVGQS------------- 130 (393)
T ss_dssp HHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTTCE------------EEEEECCTTCC-------------
T ss_pred HHHHHHHh--------CCCCEEEEECCCcchHHHHHHHHHcCCe------------eEEEeCCCCCC-------------
Confidence 99999773 234789999999988532111 111211 11122211000
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPD 267 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d 267 (447)
.+++++++.+... ++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|.. ..... ...+|
T Consensus 131 ~d~~~l~~~i~~~---~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~d 198 (393)
T 2huf_A 131 LSLDEIRDALLIH---KPSVLFLTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGA--PMFMD--RWEID 198 (393)
T ss_dssp CCHHHHHHHHHHH---CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTT--TTTCS
T ss_pred CCHHHHHHHHhcc---CCcEEEEEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC--Ccchh--hcCcc
Confidence 0137788777631 3457777788888887776 8999999999999999999986 5433 22222 23478
Q ss_pred eeee--cccCCCcccceeEEEeChhHHHHhhhccCCCCccC---------------cCCC-CCCcHHHHHHHHHHHHHHh
Q 013204 268 LVSF--AKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFS---------------HGFT-YSGHPVSCAVAIEALKIYK 329 (447)
Q Consensus 268 ~v~~--sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------------~~~t-~~~~~~~~~aa~a~l~~~~ 329 (447)
++++ +|.++|+ .++|++++++++++.+.........+. ...+ .+.+..+++++.++++.+.
T Consensus 199 ~~~~s~sK~l~g~-~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~ 277 (393)
T 2huf_A 199 AMYTGSQKVLGAP-PGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMAC 277 (393)
T ss_dssp EEECCSSSTTCCC-SSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCcccccC-CCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHH
Confidence 8765 5988765 467999999999888764210000100 1112 2446666666667787664
Q ss_pred h---hcHHHHHHHHHHHHHHhHhhccCCCceeeEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEe
Q 013204 330 E---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRV 404 (447)
Q Consensus 330 ~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~ 404 (447)
+ ++..++++++++++++.|+++ +..+..... ..+.++.+.+.... ....+.+.|+++ ||.+.+
T Consensus 278 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~L~~~~gi~v~~ 345 (393)
T 2huf_A 278 EEGLPALIARHEDCAKRLYRGLQDA-GFELYADPKDRLSTVTTIKVPQGV-----------DWLKAAQYAMKTYLVEISG 345 (393)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCTTEEEEECCTTC-----------CHHHHHHHHHHHHCEECBC
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCccccCCcEEEEEcCCCC-----------CHHHHHHHHHHhCCEEEec
Confidence 3 345678888888888888876 333322111 12335556654211 144678888765 999886
Q ss_pred e-----CCEEEEec-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 405 S-----GDNIMMSP-PFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 405 ~-----g~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
+ .+.+|+++ ++..+++++++++++|++++++++.+
T Consensus 346 g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~~~ 386 (393)
T 2huf_A 346 GLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKPD 386 (393)
T ss_dssp CCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCC-
T ss_pred CcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 4 36799998 55678999999999999999887644
No 136
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.91 E-value=3.2e-23 Score=207.09 Aligned_cols=352 Identities=13% Similarity=0.108 Sum_probs=222.9
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCC----cccccC-cCCChHHHHHHHHHHHhcCcCCCCeEEEeCChh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP----FYHSFW-NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGS 105 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGs 105 (447)
++..|+|. +++|+.++.+.+++.+.+.... ..+... ....+...++.+++++.+. .++++|+|++|++
T Consensus 66 ~~~iyld~------~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~~~v~~t~g~t 138 (465)
T 3e9k_A 66 ENAIYFLG------NSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVG-ANEKEIALMNALT 138 (465)
T ss_dssp CBCEECBT------TTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHT-CCGGGEEECSCHH
T ss_pred CCeEEecC------CccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcC-CCcCCEEEECCHH
Confidence 35577775 4567777888777777664321 111100 0112334567788888763 4567999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh---cccCCccccCCCCCCCCcceecCCCCcccCCCCCCCh
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA---SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETE 182 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (447)
+++..+++.+... + ..+++||+.++.||+...... ...|..... ..+...+.+..+.
T Consensus 139 ~al~~~~~~~~~~----~-~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~-------~~v~~~~~~~~~~-------- 198 (465)
T 3e9k_A 139 VNLHLLMLSFFKP----T-PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEE-------SMRMIKPREGEET-------- 198 (465)
T ss_dssp HHHHHHHHHHCCC----C-SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHH-------HEEEECCCTTCSS--------
T ss_pred HHHHHHHHHhccc----c-CCCCEEEEcCCcCCchHHHHHHHHHHcCCccee-------eeEEEecCCCCCc--------
Confidence 9999999876311 2 235679999999998643221 112211100 0000011111000
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccC
Q 013204 183 EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKY 262 (447)
Q Consensus 183 ~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~ 262 (447)
.+++++++.+.+.. +++++|+++++++.+|.+.+ +++|.++|++||+++|+|++|+ .|... ....
T Consensus 199 -----~d~~~l~~~i~~~~-~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~~--~~~~-- 263 (465)
T 3e9k_A 199 -----LRIEDILEVIEKEG-DSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNVE--LYLH-- 263 (465)
T ss_dssp -----CCHHHHHHHHHHHG-GGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHH--
T ss_pred -----cCHHHHHHHHHhcC-CCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCcC--Cchh--
Confidence 01378888886432 36889999999999998877 8999999999999999999997 43321 1111
Q ss_pred CCCCCeee--ecccCCCcccceeEEEeChhHHHHhhhccCCC--C----ccC--c----------CCCCCCcHHHHHHHH
Q 013204 263 SIKPDLVS--FAKALSSAYMPIGAILVSPEVSEVIHSQSNTL--G----SFS--H----------GFTYSGHPVSCAVAI 322 (447)
Q Consensus 263 ~~~~d~v~--~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~--~----~~~--~----------~~t~~~~~~~~~aa~ 322 (447)
....|+++ ++|.+.+|..++|++++++++.+.+....... + .+. . ....+++++++++..
T Consensus 264 ~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~ 343 (465)
T 3e9k_A 264 DWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLH 343 (465)
T ss_dssp HHTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHH
T ss_pred hcCCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHH
Confidence 22467775 45999644357899999998876553210000 0 000 0 001256778888888
Q ss_pred HHHHHHhh---hcHHHHHHHHHHHHHHhHhhc----------cCCCcee--eEeeeeeEEEEEeecCCCCCCCCCCCcch
Q 013204 323 EALKIYKE---RNIVEQVNKIAPKFQDGVKAF----------SDSPIIG--EIRGTGLILGTEFADNKSPNEPFPPEWGI 387 (447)
Q Consensus 323 a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l----------~~~~~~~--~~~~~g~~~~i~~~~~~~~~~~~~~~~~~ 387 (447)
++++.+.. +++.++..++.+++.+.|+++ .+..+.. +....|.++.+.+.. .
T Consensus 344 aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~-~------------ 410 (465)
T 3e9k_A 344 ASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV-P------------ 410 (465)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC-T------------
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC-C------------
Confidence 88887764 456778888888888888774 1111111 112236777776652 1
Q ss_pred HHHHHHHHHHcCceEEeeC-CEEEEec-CCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 388 GAYFGAQCEKHGMLVRVSG-DNIMMSP-PFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 388 ~~~~~~~l~~~Gi~~~~~g-~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
...+.+.|.++||++...+ +.+|++| ++.+|++||+++++.|++++++.+
T Consensus 411 ~~~l~~~L~~~Gi~v~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~~ 462 (465)
T 3e9k_A 411 NKDVFQELEKRGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSAE 462 (465)
T ss_dssp TCCHHHHHHTTTEECEEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHCCEEEecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhcc
Confidence 1137788999999988664 7899999 899999999999999999987543
No 137
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.91 E-value=5.5e-23 Score=204.18 Aligned_cols=311 Identities=16% Similarity=0.107 Sum_probs=188.6
Q ss_pred HHHHHHHHHHhc----C-cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCc-------------ceEEEE-cCCCcc
Q 013204 79 SLDLAKELLEMF----T-ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNK-------------KKFIAR-QKSYHG 139 (447)
Q Consensus 79 ~~~l~~~l~~~~----~-~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~-------------~~vi~~-~~~yhg 139 (447)
..++.+.+++++ . ..++++|+|++||++|+..+++.+.. +++ ..||+. ++.|++
T Consensus 85 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~-------~gd~~~~~~~~~~g~~~~vi~~~~p~~~~ 157 (444)
T 3if2_A 85 DSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGG-------AFVNEHSQDKESKSVDKSILLPLTPEYIG 157 (444)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSE-------EEECC-------CEEEEEEEESSSSCCGG
T ss_pred CHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhC-------CCccccccccccccccceEEEeCCCCccc
Confidence 345555555554 2 24678999999999999999997631 111 046654 889988
Q ss_pred chhhhhcccCCccccCCCCCCCCcceecCCCCc---ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCC
Q 013204 140 STLIAASLSGLPALHQKFDLPAPFVLHTDCPHY---WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGA 216 (447)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~ 216 (447)
+........... ..+ ..+..++.... +.+ . .++++|++.+....+ ++++|+++..++.
T Consensus 158 ~~~~~~~~~~~~----~~~---~~~~~~~~~~~~g~~~~---~--------~d~~~l~~~l~~~~~-~~~~v~i~~p~np 218 (444)
T 3if2_A 158 YSDVHVEGQHFA----AVL---PHIDEVTHDGEEGFFKY---R--------VDFEALENLPALKEG-RIGAICCSRPTNP 218 (444)
T ss_dssp GTTCCSSSCCEE----ECC---CEEEEEEETTEEEEEEE---E--------CCHHHHHTCHHHHTT-CEEEEEEESSCTT
T ss_pred hhhcccccchhh----ccC---ceEEecccccccCcccc---C--------CCHHHHHHHHHhcCC-CceEEEeCCCCCC
Confidence 754321100000 000 01111111100 000 0 013777776533333 4555555544555
Q ss_pred CCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccc---ccCCCCCCeeeecccCCCcccceeEEEeChhHHH
Q 013204 217 GGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGC---DKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSE 293 (447)
Q Consensus 217 ~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~---~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~ 293 (447)
+|. ..+.+.+++|.++|++||+++|+||+|..+ ..+..+.- ...+...++.++||.+..| +++|++++++++++
T Consensus 219 tG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G-~r~G~~~~~~~l~~ 295 (444)
T 3if2_A 219 TGN-VLTDEEMAHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSDAHLNWDNNTILCFSLSKIGLPG-MRTGIIVADAKVIE 295 (444)
T ss_dssp TCC-CCCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESTTTTCGG-GCCEEEECCHHHHH
T ss_pred CCC-cCCHHHHHHHHHHHHHCCCEEEEECCCCCc-ccccccccccccCCCCEEEEechhhccCCC-CceEEEEECHHHHH
Confidence 564 457788999999999999999999999742 22111110 1112223355789974445 89999999999988
Q ss_pred HhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-----hhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEeeeeeEE
Q 013204 294 VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-----ERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLIL 367 (447)
Q Consensus 294 ~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-----~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~ 367 (447)
.+... .+..++..+++++.++.+.++... .+...+.++++.+.+++.|.+. ....+.......|.++
T Consensus 296 ~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~ 368 (444)
T 3if2_A 296 AVSAM-------NAVVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFL 368 (444)
T ss_dssp HHHHH-------HHHHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEE
T ss_pred HHHHH-------HHhccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEE
Confidence 87632 223355667788877777765321 1124456666777777777653 3333222223456677
Q ss_pred EEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---------------CEEEEecCCCCCHHHHHHHHHHHHHH
Q 013204 368 GTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---------------DNIMMSPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 368 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---------------~~iR~~~~~~~t~e~i~~~~~~l~~~ 432 (447)
.+.+..... ....+.+.|.++||.+.++. +.+||+++. ++++|++++++|+++
T Consensus 369 ~~~~~~~~~----------~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~ 436 (444)
T 3if2_A 369 WLWFKDLPI----------STLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEV 436 (444)
T ss_dssp EEEETTCSS----------CHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHH
T ss_pred EEEcCCCCC----------CHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHH
Confidence 777754211 14568888999999998742 369999775 999999999999999
Q ss_pred HHHHH
Q 013204 433 LKATE 437 (447)
Q Consensus 433 l~~~~ 437 (447)
++++.
T Consensus 437 ~~~~~ 441 (444)
T 3if2_A 437 VRELY 441 (444)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 138
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.90 E-value=4e-23 Score=203.16 Aligned_cols=338 Identities=11% Similarity=0.039 Sum_probs=209.5
Q ss_pred CCCEEEecCCccccccCCC--CCHHHHHHHHH-HHhcCC-cccccCcCCChHHHHHHHHHHHhcCc-----CCCCeEEE-
Q 013204 31 NGKKYLDSLAGLWCTALGG--SEPRLVAAATA-QLNTLP-FYHSFWNRTTKPSLDLAKELLEMFTA-----SKMAKVFF- 100 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~--~~p~v~~a~~~-~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~v~~- 100 (447)
+|+.++||..+.....-|+ .+|.+.+++.+ .+.... ..+ .+.....++.+.+++++.. ..++++++
T Consensus 27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y----~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~ 102 (412)
T 1yaa_A 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEY----LGITGLPSLTSNAAKIIFGTQSDALQEDRVISV 102 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCC----CCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCC----CCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEE
Confidence 4677899988854333332 56899999998 775321 111 1223345666666666521 13578999
Q ss_pred -eCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCC-C-CcccCCC
Q 013204 101 -TNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC-P-HYWRYAH 177 (447)
Q Consensus 101 -~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ 177 (447)
++||++|++.+++++... .++++|++.+++|+++.......+.... .++. . +.+.
T Consensus 103 ~t~g~~~a~~~~~~~~~~~------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~-------------~v~~~~~~~~~--- 160 (412)
T 1yaa_A 103 QSLSGTGALHISAKFFSKF------FPDKLVYLSKPTWANHMAIFENQGLKTA-------------TYPYWANETKS--- 160 (412)
T ss_dssp EEEHHHHHHHHHHHHHHHH------CTTCCEEEEESCCTTHHHHHHTTTCCEE-------------EEECEETTTTE---
T ss_pred eccchHhHHHHHHHHHHHh------CCCCEEEEeCCCCccHHHHHHHcCceEE-------------EEeeecCCCCc---
Confidence 999999999997765433 2347899999999998655444322111 1111 0 0000
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccc---
Q 013204 178 PGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG--- 254 (447)
Q Consensus 178 ~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g--- 254 (447)
.+++++++.+....+ ...++++...++.+| ...+.+.+++|.++|++||+++|+||+|.+++..+
T Consensus 161 ----------~d~~~l~~~l~~~~~-~~~~~~~~~p~nPtG-~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~ 228 (412)
T 1yaa_A 161 ----------LDLNGFLNAIQKAPE-GSIFVLHSCAHNPTG-LDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDK 228 (412)
T ss_dssp ----------ECHHHHHHHHHHSCT-TCEEEEECSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHH
T ss_pred ----------cCHHHHHHHHHhCCC-CCEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccc
Confidence 014778887764322 244555344444445 45678899999999999999999999999886543
Q ss_pred ccccc-ccCCCCC---C---eeeecccCCCcccceeEEE--e-----Chh----HHHHhhhccCCCCccCcCCCCCCcHH
Q 013204 255 TMFGC-DKYSIKP---D---LVSFAKALSSAYMPIGAIL--V-----SPE----VSEVIHSQSNTLGSFSHGFTYSGHPV 316 (447)
Q Consensus 255 ~~~~~-~~~~~~~---d---~v~~sK~l~gg~~~~g~~~--~-----~~~----~~~~~~~~~~~~~~~~~~~t~~~~~~ 316 (447)
..... ......+ + +.++||.++..++|+|+++ + +++ +++.+... ....+.+++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~ 301 (412)
T 1yaa_A 229 DAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKI-------IRSEVSNPPAY 301 (412)
T ss_dssp HTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHH-------HHTTTSSCCHH
T ss_pred hhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHH-------HhhccCCCChH
Confidence 22122 1111223 2 2368999987338999998 7 565 66666521 11223345788
Q ss_pred HHHHHHHHHHHHh--------hhcHHHHHHHHHHHHHHhHhhcc---CCCceeeEeeeee-EEEEEeecCCCCCCCCCCC
Q 013204 317 SCAVAIEALKIYK--------ERNIVEQVNKIAPKFQDGVKAFS---DSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPE 384 (447)
Q Consensus 317 ~~~aa~a~l~~~~--------~~~~~~~~~~~~~~l~~~L~~l~---~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~ 384 (447)
++.++.++|+... -++..++++++.+++.+.|+++. ...+. .+.+. +..+.+.
T Consensus 302 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---~~~~~~~~~~~~~------------ 366 (412)
T 1yaa_A 302 GAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHI---VNQCGMFSFTGLT------------ 366 (412)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHH---HHCCSSEEECCCC------------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeee---ccCceEEEeeCCC------------
Confidence 8888888886431 23456677778888888887762 12221 22232 3222111
Q ss_pred cchHHHHHHHHHHcCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 385 WGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 385 ~~~~~~~~~~l~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
...+.+.+.++||++.+ .+|++++. .+++++++++++|+++++.
T Consensus 367 ---~~~~~~~l~~~gi~v~~---~~Ris~~~-~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 367 ---PQMVKRLEETHAVYLVA---SGRASIAG-LNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp ---HHHHHHHHHHHCEECCT---TSEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCCEEecc---CcEEEEcc-CCHhHHHHHHHHHHHHHHh
Confidence 22354455578999876 47999763 5999999999999998764
No 139
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.90 E-value=3.3e-23 Score=204.41 Aligned_cols=347 Identities=10% Similarity=0.023 Sum_probs=211.8
Q ss_pred EEecCCcccccc-CCCCCHHHHHHHHHHHh--cCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHH--H
Q 013204 35 YLDSLAGLWCTA-LGGSEPRLVAAATAQLN--TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAN--D 109 (447)
Q Consensus 35 ~lD~~~~~~~~~-lG~~~p~v~~a~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~--~ 109 (447)
.+||..+..... ++ .+|.+.+++.+.+. ....... ........++.+.+++++ ..++++|++++|+++++ .
T Consensus 34 ~i~l~~g~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~--Y~~~~G~~~lr~~ia~~~-~~~~~~i~~t~G~~~al~l~ 109 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLD-LSNDLLSLPGGDFRTKDGVDCRN--YGGLLGIADIRELWAEAL-GLPADLVVAQDGSSLNIMFD 109 (422)
T ss_dssp CEECCCCSCCHHHHH-TTGGGGGCSTTCCBCTTCCBTTS--SCCSSCCHHHHHHHHHHH-TCCGGGEEECSSCHHHHHHH
T ss_pred eEeCCCCCCChhhCC-CcHHHHHHHHHHHhhccchhhhC--CCCCCCCHHHHHHHHHHh-CCChhHEEEecchHHHHHHH
Confidence 688876642100 22 34567776655421 1100000 112223567888888887 35678999999999997 5
Q ss_pred HHHHHHHHHHHhcCCC-----CcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhH
Q 013204 110 TQVKLVWYYNNALGRP-----NKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~-----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (447)
.+++.+... ...|+. .+++|++.+|+|+++.......+.... .++.... +
T Consensus 110 ~~~~~l~~~-~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~-------------~v~~~~~------g----- 164 (422)
T 3d6k_A 110 LISWSYTWG-NNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMI-------------NVPMTDE------G----- 164 (422)
T ss_dssp HHHHHHHHC-CTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEE-------------EEEEETT------E-----
T ss_pred HHHHHhcCc-ccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEE-------------ecCCCCC------C-----
Confidence 555654310 000100 124699999999998755544332211 1111000 0
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEcc-ccCCCCCccCChhHHHHHHHHHH-hcCCEEEEehhhcC--CCcccccc-cc
Q 013204 185 YSTRLANNLEDLILKEGPETIAAFIAEP-VIGAGGVIPPPATYFEKVQAVVK-KYDILFIADEVICA--FGRLGTMF-GC 259 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~~~~a~vi~ep-v~~~~G~~~~~~~~l~~l~~l~~-~~g~~li~DEv~~g--~g~~g~~~-~~ 259 (447)
.+++++++.+. +.++++|++.| .++.+|. .++.+++++|.++|+ +||+++|+||+|.. |+..+..+ ..
T Consensus 165 ---~d~~~l~~~l~---~~~~~~v~~~~~~~NPtG~-~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~ 237 (422)
T 3d6k_A 165 ---PDMGVVRELVK---DPQVKGMWTVPVFGNPTGV-TFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNV 237 (422)
T ss_dssp ---ECHHHHHHHHT---STTEEEEEECCSSCTTTCC-CCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCH
T ss_pred ---CCHHHHHHHHh---cCCCeEEEEcCCCCCCCCC-CCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcCh
Confidence 11477777774 23567777444 4555664 568899999999999 99999999999974 64443221 11
Q ss_pred -------ccCCCCCCeeeecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh---
Q 013204 260 -------DKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK--- 329 (447)
Q Consensus 260 -------~~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--- 329 (447)
...+....+.+|||....| +|+|++++++++++.+... ....+++.+++++.++.++|+...
T Consensus 238 ~~~~~~~~~~~~~i~~~S~SK~~~~G-lriG~~~~~~~l~~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~ 309 (422)
T 3d6k_A 238 IEFAQAAGNPNRFWFMSSTSKITHAG-SGVSFFASSKENIEWYASH-------ANVRGIGPNKLNQLAHAQFFGDVAGLK 309 (422)
T ss_dssp HHHHHHTTCTTCEEEEEESTTTSCTT-SSCEEEECCHHHHHHHHHH-------HHHHCSCCCHHHHHHHHHHHCSHHHHH
T ss_pred hhHhhccCCCCcEEEEcChhhhcCcc-cceEEEEeCHHHHHHHHHH-------HHhhcCCCCHHHHHHHHHHHhCcchHH
Confidence 1222334455789984444 8999999999998887632 222356678888888888775311
Q ss_pred --hhcHHHHHHHHHHHHHHhHhhc-cCCCceeeEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee
Q 013204 330 --ERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS 405 (447)
Q Consensus 330 --~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~ 405 (447)
-++..+.++++.+.+++.|++. ...+.+..+. ..|.++.+.+.... ...+.+.|.++||++.++
T Consensus 310 ~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~------------~~~~~~~l~~~gV~v~~~ 377 (422)
T 3d6k_A 310 AHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGT------------ASRVVELAKEAGIALTGA 377 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTTC------------HHHHHHHHHHTTEECCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCCC------------HHHHHHHHHHCCeEEEcC
Confidence 1223445555666666666543 3323222222 34666777775321 345778889999999872
Q ss_pred -----------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 406 -----------GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 406 -----------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.+.+|++++. ++++++++++++|+++++++..
T Consensus 378 g~~f~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~~~ 420 (422)
T 3d6k_A 378 GSSFPLHNDPNNENIRLAPSL-PPVAELEVAMDGFATCVLMAAL 420 (422)
T ss_dssp TTTSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCeEEEecCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 1469999776 8999999999999999877643
No 140
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.90 E-value=3.5e-22 Score=199.10 Aligned_cols=352 Identities=16% Similarity=0.104 Sum_probs=209.5
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~ 110 (447)
.|+.|+||.++.+..+ -.+++.+++. ..... ..+.+...++++++++++ +.+++++++||++|++.
T Consensus 40 ~~~~ylD~~~~~~~~~---~~~~~~~a~~----~~~~~----y~~~~~~~~l~~~la~~~---~~~~~~~~~~gt~a~~~ 105 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNA---MSDKQWAGMM----MGDEA----YAGSENFYHLERTVQELF---GFKHIVPTHQGRGAENL 105 (456)
T ss_dssp GGGCSEECSCSSSCCC---CCHHHHHHHT----TCCCC----SSSCHHHHHHHHHHHHHH---CCSEEEEESSHHHHHHH
T ss_pred cccceeeeccccCCcc---CCHHHHHHhh----cchhh----cccChhHHHHHHHHHHHh---CCCcEEEeCCcHHHHHH
Confidence 5678999987754432 2466666654 21111 124567789999999987 44589999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
+++.+. +++ + |+..++||+.+...+...|.....-............++ .+ . .++
T Consensus 106 al~~l~-------~~g-d--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~----~~---~--------~d~ 160 (456)
T 2ez2_A 106 LSQLAI-------KPG-Q--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAF----KG---D--------IDL 160 (456)
T ss_dssp HHHHHC-------CTT-C--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSC----TT---C--------BCH
T ss_pred HHHHhC-------CCC-C--EeccccccchhHHHHHHcCCEEEEecccccccccccccc----cC---C--------CCH
Confidence 998763 133 3 778899988865555544432211111000000000000 00 0 014
Q ss_pred HHHHHHHHhhCCCcEEEEEEc-cccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC----------CCccccccc-
Q 013204 191 NNLEDLILKEGPETIAAFIAE-PVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA----------FGRLGTMFG- 258 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~e-pv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g----------~g~~g~~~~- 258 (447)
++|++.+....+..+++|+++ |.|+.+| .+.+.+++++|+++|++||+++|+||+|+. +.+.|....
T Consensus 161 ~~l~~~i~~~t~~~~~~v~l~~p~n~ptG-~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~ 239 (456)
T 2ez2_A 161 KKLQKLIDEKGAENIAYICLAVTVNLAGG-QPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAE 239 (456)
T ss_dssp HHHHHHHHHHCGGGEEEEEEESSBTTTTS-BCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHH
T ss_pred HHHHHHHHhccccceeEEEEeccCCCCCC-ccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhh
Confidence 778888865332346777777 5554677 567889999999999999999999999984 334443211
Q ss_pred -cccCCCCCCeeeec-ccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcCCCC-CCcHHHHHH-HHHHHHHHhhhcH
Q 013204 259 -CDKYSIKPDLVSFA-KALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHGFTY-SGHPVSCAV-AIEALKIYKERNI 333 (447)
Q Consensus 259 -~~~~~~~~d~v~~s-K~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~~a-a~a~l~~~~~~~~ 333 (447)
.+..+..+|++++| |.+++.+ .+|++++ ++++++.+...... .....++ +.++..+.+ +.+.++.+. +++
T Consensus 240 ~~~~~~~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~ 314 (456)
T 2ez2_A 240 IVHEMFSYADGCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKELVVV---YEGMPSYGGLAGRDMEAMAIGLREAMQ-YEY 314 (456)
T ss_dssp HHHHHHTTCSEEEEETTTTTCCS-SCEEEEESCHHHHHHHHHHHHH---HTCCTTTTTCCHHHHHHHHHHHHHHTC-HHH
T ss_pred hhhhhcccCCEEEEeCcccCCCC-ceeEEEECCHHHHHHHHHHHhh---ccCcccccCcchhHHHHHHHHHHHHhH-HHH
Confidence 00122347888774 6665532 4788888 67887766431100 0001111 223333333 444444332 356
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeec--CCCCCCCCCCCcch-HHHHHHHH-HHcCceEEee----
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFAD--NKSPNEPFPPEWGI-GAYFGAQC-EKHGMLVRVS---- 405 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~~~~~~~-~~~~~~~l-~~~Gi~~~~~---- 405 (447)
.++.+++.+++++.|+++ +.+++. ...|.++.+.+.. +.... ..+ ...+.+.| .++||.+.+.
T Consensus 315 ~~~~~~~~~~l~~~L~~~-g~~~~~--p~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~L~~~~gv~~~~~g~~~ 385 (456)
T 2ez2_A 315 IEHRVKQVRYLGDKLKAA-GVPIVE--PVGGHAVFLDARRFCEHLTQ------DEFPAQSLAASIYVETGVRSMERGIIS 385 (456)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCBCS--SCCSSEEEEEHHHHTTTSCG------GGCHHHHHHHHHHHHHSEECEEESHHH
T ss_pred HHHHHHHHHHHHHHHhcC-CCcccc--CCCceEEEEEhHHhcCCCCh------hhccHHHHHHHHHHhcCeeeecccccc
Confidence 677777788888888774 333322 2235555666532 11010 112 33456666 5889875432
Q ss_pred --------------CCEEEEecCCC-CCHHHHHHHHHHHHHHHHHH
Q 013204 406 --------------GDNIMMSPPFI-MSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 406 --------------g~~iR~~~~~~-~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+.+|++++.. +++++|++++++|++++++.
T Consensus 386 ~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~ 431 (456)
T 2ez2_A 386 AGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHK 431 (456)
T ss_dssp HCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTG
T ss_pred cccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 15799999887 89999999999999998763
No 141
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.90 E-value=1.2e-22 Score=195.54 Aligned_cols=327 Identities=15% Similarity=0.125 Sum_probs=198.3
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
...++||.++. .++.+|++++++.+++.. +....+..+...++++++++.+. ...+++|++||++|++.+
T Consensus 6 ~~~~id~~~~~----~~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~l~~~la~~~g--~~~~v~~~~~gt~a~~~a 75 (356)
T 1v72_A 6 RPPALGFSSDN----IAGASPEVAQALVKHSSG----QAGPYGTDELTAQVKRKFCEIFE--RDVEVFLVPTGTAANALC 75 (356)
T ss_dssp CCCCCBCSCGG----GCCCCHHHHHHHHHTTSS----CCCSTTCSHHHHHHHHHHHHHHT--SCCEEEEESCHHHHHHHH
T ss_pred CCceEeeccCC----ccCCCHHHHHHHHhhccC----cccccccchHHHHHHHHHHHHhC--CCCcEEEeCCccHHHHHH
Confidence 35689998763 256899999999987632 11112346677899999999974 334589999999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhhh--hccc--CCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA--ASLS--GLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
++.++ ..++.|++..+ +|+..... +... |... ..++.++ +.
T Consensus 76 l~~~~--------~~gd~vi~~~~-~~~~~~~~~~~~~~~~g~~~------------~~v~~~~-~~------------- 120 (356)
T 1v72_A 76 LSAMT--------PPWGNIYCHPA-SHINNDECGAPEFFSNGAKL------------MTVDGPA-AK------------- 120 (356)
T ss_dssp HHTSC--------CTTEEEEECTT-SHHHHSSTTHHHHHTTSCEE------------EECCCGG-GC-------------
T ss_pred HHHhc--------CCCCEEEEcCc-cchhhhhchHHHHHhCCcEE------------EEecCCC-Ce-------------
Confidence 99763 23356666544 45543222 2211 2211 1111110 00
Q ss_pred HHHHHHHH-HHHhh---CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc--ccccccccc
Q 013204 188 RLANNLED-LILKE---GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR--LGTMFGCDK 261 (447)
Q Consensus 188 ~~~~~le~-~l~~~---~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~--~g~~~~~~~ 261 (447)
.++++|++ .+... ...++++|++++.++ +| .+++.+++++|.++|++||+++|+||+|..+.. .|.. ...
T Consensus 121 ~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG-~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~ 196 (356)
T 1v72_A 121 LDIVRLRERTREKVGDVHTTQPACVSITQATE-VG-SIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS--PAE 196 (356)
T ss_dssp CCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TS-CCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--TTT
T ss_pred EcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CC-ccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC--HHH
Confidence 11377777 66421 112578888888765 66 456889999999999999999999999874311 1211 111
Q ss_pred CC--CCCCeee--ecccCCCccccee--EEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh---c
Q 013204 262 YS--IKPDLVS--FAKALSSAYMPIG--AILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER---N 332 (447)
Q Consensus 262 ~~--~~~d~v~--~sK~l~gg~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~---~ 332 (447)
.+ ...|+++ ++|. | .|+| ++++++++++.+..... ..+........ ++.++++.++++ +
T Consensus 197 ~~~~~~~d~~~~s~sK~--g--~~~G~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~l~~~~~~~ 264 (356)
T 1v72_A 197 MTWKAGVDALSFGATKN--G--VLAAEAIVLFNTSLATEMSYRRK-----RAGHLSSKMRF---LSAQIDAYLTDDLWLR 264 (356)
T ss_dssp TTGGGTCCEEEECCGGG--T--CSSCEEEEESSGGGHHHHHHHHH-----HTTCCCSSTHH---HHHHHHHHTSTTHHHH
T ss_pred hhhhhcCCEEEEecccC--C--CcCccEEEEECHHHHhhHHHHhh-----ccCchhhhHHH---HHHHHHHHHHhhhHHH
Confidence 11 1356654 5687 2 3555 77788888877643110 01111121222 223334444332 2
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---CCEE
Q 013204 333 IVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---GDNI 409 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---g~~i 409 (447)
..++.+++.+++++.|+++.+..+. .+..+.++.+.+.. .+.+.|.++||.+.++ .+.+
T Consensus 265 ~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~~~~~~~~~~~----------------~~~~~l~~~gi~v~~g~~~~~~i 326 (356)
T 1v72_A 265 NARKANAAAQRLAQGLEGLGGVEVL--GGTEANILFCRLDS----------------AMIDALLKAGFGFYHDRWGPNVV 326 (356)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTEEEE--SCCCSSEEEEEECH----------------HHHHHHHHTTCBCBCSSSSTTEE
T ss_pred HHHHHHHHHHHHHHHHhhCCCcEEc--cCCCccEEEEEcCH----------------HHHHHHHhcCeEEeccccCCCeE
Confidence 4556677777787777664221111 12234444554431 3778889999998854 3679
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 410 MMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 410 R~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
|+++++.++++++++++++|++++++.+
T Consensus 327 Ri~~~~~~~~~~i~~~~~~l~~~l~~~~ 354 (356)
T 1v72_A 327 RFVTSFATTAEDVDHLLNQVRLAADRTQ 354 (356)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHTC----
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999886643
No 142
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.90 E-value=1.7e-22 Score=197.84 Aligned_cols=327 Identities=13% Similarity=0.067 Sum_probs=210.0
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQV 112 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al 112 (447)
+.|+||.++... ++ |++++++.+++....+ .+.+...++++.+++++ +.+++++++||++|++.++
T Consensus 30 ~~~id~~~~~~~--~~---~~v~~a~~~~~~~~~y------~~~~~~~~l~~~la~~~---~~~~~v~~~~Gt~a~~~~l 95 (399)
T 2oga_A 30 VPFLDLKAAYEE--LR---AETDAAIARVLDSGRY------LLGPELEGFEAEFAAYC---ETDHAVGVNSGMDALQLAL 95 (399)
T ss_dssp BCSCCHHHHHHH--TH---HHHHHHHHHHHHHTCC------SSSHHHHHHHHHHHHHT---TSSEEEEESCHHHHHHHHH
T ss_pred CcccccCcCCCC--CC---HHHHHHHHHHHhcCCC------CCchhHHHHHHHHHHHH---CCCeEEEecCHHHHHHHHH
Confidence 578999877543 32 8999999998875321 13466788999999987 3347899999999999999
Q ss_pred HHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhHHHHHHHH
Q 013204 113 KLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEEYSTRLAN 191 (447)
Q Consensus 113 ~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 191 (447)
+.+. . .++++|++.+++|++....... .|... ..++... .+. .+++
T Consensus 96 ~~~~------~-~~gd~vl~~~~~~~~~~~~~~~-~g~~~------------~~~~~~~~~~~-------------~d~~ 142 (399)
T 2oga_A 96 RGLG------I-GPGDEVIVPSHTYIASWLAVSA-TGATP------------VPVEPHEDHPT-------------LDPL 142 (399)
T ss_dssp HHTT------C-CTTCEEEEESSSCTHHHHHHHH-TTCEE------------EEECBCSSSSS-------------BCHH
T ss_pred HHhC------C-CCcCEEEECCCccHHHHHHHHH-CCCEE------------EEEecCCCCCC-------------cCHH
Confidence 8762 1 3347899999999986544332 23221 1111110 000 0136
Q ss_pred HHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee
Q 013204 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF 271 (447)
Q Consensus 192 ~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~ 271 (447)
++++.+. +++++|++++ .+|.+.+ +++|.++|++||+++|+||+|+ +|..... ..++..+|++++
T Consensus 143 ~l~~~i~----~~~~~v~~~n---~tG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~~~---~~~~~~~di~~~ 207 (399)
T 2oga_A 143 LVEKAIT----PRTRALLPVH---LYGHPAD----MDALRELADRHGLHIVEDAAQA-HGARYRG---RRIGAGSSVAAF 207 (399)
T ss_dssp HHHHHCC----TTEEEECCBC---GGGCCCC----HHHHHHHHHHHTCEECEECTTC-TTCEETT---EETTCTTCEEEE
T ss_pred HHHHhcC----CCCeEEEEeC---CcCCccC----HHHHHHHHHHcCCEEEEECccc-ccCccCC---eecccccCEEEE
Confidence 6776664 2566776433 3455554 9999999999999999999997 3321111 112333688877
Q ss_pred c----ccCCCcccceeEEEeC-hhHHHHhhhccCCC--CccC---cCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 013204 272 A----KALSSAYMPIGAILVS-PEVSEVIHSQSNTL--GSFS---HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIA 341 (447)
Q Consensus 272 s----K~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~--~~~~---~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~ 341 (447)
| |.+++.+ ++|+++.+ +++++.+....... ..+. .+.++..++++++++.++++.++ ++.++.+++.
T Consensus 208 S~~~sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~ 284 (399)
T 2oga_A 208 SFYPGKNLGCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALA 284 (399)
T ss_dssp ECCTTSSSCCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHH
T ss_pred eCCCCccCCcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 4 9998733 78888886 78877665321100 0011 12234567888888888887553 3456677777
Q ss_pred HHHHHhHhhccCCCceee-EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--------------
Q 013204 342 PKFQDGVKAFSDSPIIGE-IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------------- 406 (447)
Q Consensus 342 ~~l~~~L~~l~~~~~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-------------- 406 (447)
+++++.|+++++..+... ..+.+.++.+.+... ....+.+.|.++||.+.+..
T Consensus 285 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~ 352 (399)
T 2oga_A 285 AEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTE------------RRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEA 352 (399)
T ss_dssp HHHHHHTTTCTTCBCCCCCTTEECCCSSEEEECS------------SHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTS
T ss_pred HHHHHHhccCCCccccCCCCCCcceeEEEEEECC------------CHHHHHHHHHHCCCceecCCCCccccchhhcccC
Confidence 888888876533222110 011222112222211 14568889999999987532
Q ss_pred --------------CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 407 --------------DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 407 --------------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
+.+|++++..+|++|+++++++|+++++++
T Consensus 353 ~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 353 PPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp CCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 359999999999999999999999988654
No 143
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.90 E-value=1.6e-22 Score=193.12 Aligned_cols=312 Identities=15% Similarity=0.138 Sum_probs=198.8
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc--CCCCeEEEeCChhhHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA--SKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~v~~~~sGseA~~~ 110 (447)
++++||.++. ++++ .+|++.+++.+++.+... + ..+.....++.+.+++++.. .+.+++++++||++|++.
T Consensus 19 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~-~---~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~ 91 (335)
T 1uu1_A 19 RDKTYLALNE--NPFP-FPEDLVDEVFRRLNSDAL-R---IYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYV 91 (335)
T ss_dssp CCSEEESSCC--CSSC-CCHHHHHHHHHTCCGGGG-G---SCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHH
T ss_pred CcceECCCCC--CCCC-CCHHHHHHHHHHhhhhhh-h---cCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHH
Confidence 4688987775 3455 689999999988732111 1 11222356788888888741 356799999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 111 QVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 111 Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
+++.+ +++|++. ++||++....... |.... .++..+.+.. + +
T Consensus 92 ~~~~~-----------gd~Vl~~-p~y~~~~~~~~~~-g~~~~------------~v~~~~~~~~-----d--------~ 133 (335)
T 1uu1_A 92 MMLMF-----------DRSVFFP-PTYSCYRIFAKAV-GAKFL------------EVPLTKDLRI-----P--------E 133 (335)
T ss_dssp HHHHS-----------SEEEECS-SSCHHHHHHHHHH-TCEEE------------ECCCCTTSCC-----C--------C
T ss_pred HHHHh-----------CCcEEEC-CCcHHHHHHHHHc-CCeEE------------EeccCCCCCC-----C--------H
Confidence 99865 2678888 9999986544332 22111 1111110000 0 0
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccc-cccCCCCCCee
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFG-CDKYSIKPDLV 269 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~~~~~~~~d~v 269 (447)
+++ ++...+++++| ++.+|.+. +.+.+++|+++| | ++|+||+|++++. +.... ....+....+.
T Consensus 134 ~~l--------~~~~~v~l~~p-~nptG~~~-~~~~l~~l~~~~---~-~li~De~~~~~~~-~~~~~~~~~~~~~i~~~ 198 (335)
T 1uu1_A 134 VNV--------GEGDVVFIPNP-NNPTGHVF-EREEIERILKTG---A-FVALDEAYYEFHG-ESYVDFLKKYENLAVIR 198 (335)
T ss_dssp CCC--------CTTEEEEEESS-CTTTCCCC-CHHHHHHHHHTT---C-EEEEECTTHHHHC-CCCGGGGGTCSSEEEEE
T ss_pred HHc--------CCCCEEEEeCC-CCCCCCCC-CHHHHHHHHHhC---C-EEEEECcchhhcc-hhHHHHhhhCCCEEEEe
Confidence 222 12333444667 45555554 555555555544 8 8999999997642 11111 11122223344
Q ss_pred eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHhH
Q 013204 270 SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-ERNIVEQVNKIAPKFQDGV 348 (447)
Q Consensus 270 ~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~~~~~~~~~~~~~~l~~~L 348 (447)
++||.++.+++++|++++++++++.+... ..+++.+++++.++.++|+..+ -++..++++++.+++.+.|
T Consensus 199 s~sK~~g~~G~r~G~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L 269 (335)
T 1uu1_A 199 TFSKAFSLAAQRVGYVVASEKFIDAYNRV---------RLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSAL 269 (335)
T ss_dssp ESTTTTTCGGGCCEEEEECHHHHHHHHHH---------SCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcCCcccCeEEEEeCHHHHHHHHHh---------cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999973338999999999998888642 1246788899998888887532 2345677777888888888
Q ss_pred hhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeCCEEEEecCCCCCHHHHHHHHHH
Q 013204 349 KAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISK 428 (447)
Q Consensus 349 ~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~ 428 (447)
+++ +..+ .+..|.++.+.+.. . ....+.+.|+++||.+.+..+.+|+++ .+++++++++++
T Consensus 270 ~~~-g~~~---~~~~~~~~~~~~~~-~-----------~~~~~~~~l~~~gi~v~~~~~~iRis~---~~~~~i~~~~~~ 330 (335)
T 1uu1_A 270 REM-GYRI---TDSRGNFVFVFMEK-E-----------EKERLLEHLRTKNVAVRSFREGVRITI---GKREENDMILRE 330 (335)
T ss_dssp HHH-TCCB---CCCCSSEEEEECCT-H-----------HHHHHHHHHHHHTEEEEEETTEEEEEC---CCHHHHHHHHHH
T ss_pred HHC-CcEE---cCCCCeEEEEECCC-C-----------CHHHHHHHHHHCCEEEEECCCeEEEEe---CCHHHHHHHHHH
Confidence 776 3222 23446666666542 0 144588889999999999778899995 357889999999
Q ss_pred HHHH
Q 013204 429 YGKA 432 (447)
Q Consensus 429 l~~~ 432 (447)
|+++
T Consensus 331 l~~~ 334 (335)
T 1uu1_A 331 LEVF 334 (335)
T ss_dssp HHCC
T ss_pred HHhh
Confidence 8753
No 144
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.90 E-value=1.3e-21 Score=189.97 Aligned_cols=338 Identities=15% Similarity=0.134 Sum_probs=212.2
Q ss_pred EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc-cc-c--CcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 34 KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HS-F--WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~-~--~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
.|+|+.++ |+.+|++++++.+.+.+.... ++ . .....+...++++++++++. .+.+++++++||++|++
T Consensus 2 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~~~v~~~~g~t~a~~ 74 (382)
T 4eb5_A 2 AYFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVN-GGGGTVVFTSGATEANN 74 (382)
T ss_dssp CBCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHT-CTTEEEEEESSHHHHHH
T ss_pred eeeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEcCchHHHHH
Confidence 37887655 468999999999998753211 10 0 00113456788889998874 34569999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcc--cCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASL--SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
.+++.+...... +++.|++.++.|++........ .|.. +..++....+.
T Consensus 75 ~~~~~l~~~~~~----~gd~Vl~~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~------------- 125 (382)
T 4eb5_A 75 LAIIGYAMRNAR----KGKHILVSAVEHMSVINPAKFLQKQGFE------------VEYIPVGKYGE------------- 125 (382)
T ss_dssp HHHHHHHHHHGG----GCCEEEEETTCCHHHHHHHHHHTTTTCE------------EEEECBCTTSC-------------
T ss_pred HHHHHHHhhccC----CCCEEEECCCcchHHHHHHHHHHhCCcE------------EEEeccCCCCc-------------
Confidence 999977522111 2368999999998774433221 1211 11222211100
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCC
Q 013204 188 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPD 267 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d 267 (447)
.++++|++.+. +++++|+++++++.+|.+.+ +++|.++|++||++ |+||+|+ +|... ..... ..+|
T Consensus 126 ~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~~--~~~~~--~~~d 191 (382)
T 4eb5_A 126 VDVSFIDQKLR----DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQIE--VDVEK--IGAD 191 (382)
T ss_dssp BCHHHHHHHCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTBC--CCHHH--HTCS
T ss_pred cCHHHHHHHhc----CCCeEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCcc--cCccc--cCCC
Confidence 01367777664 25778888988888888776 89999999999999 9999997 54321 11111 2467
Q ss_pred eee--ecccCCCcccceeEEEeChhH-HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHHHHH
Q 013204 268 LVS--FAKALSSAYMPIGAILVSPEV-SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNKIAP 342 (447)
Q Consensus 268 ~v~--~sK~l~gg~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~~~~ 342 (447)
+++ ++|.++ . .++|+++++++. +...... .+........+.++..+.++.++++.+.+ ++..++++++.+
T Consensus 192 i~~~s~sK~~g-~-~g~G~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~ 266 (382)
T 4eb5_A 192 MLTISSNDIYG-P-KGVGALWIRKEAKLQPVILG---GGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRD 266 (382)
T ss_dssp EEEEETGGGTC-C-SSCEEEEEETTCCCCCSSCS---SCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeehHHhcC-C-CceEEEEEccccccCceecC---CCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 775 469643 2 357888887763 1111000 00000112334566677777777776543 345567777777
Q ss_pred HHHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----------------
Q 013204 343 KFQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---------------- 405 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------------- 405 (447)
++.+.|++++...+.... ...+.++.+.+... ....+.+.|.++||.+.++
T Consensus 267 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~ 334 (382)
T 4eb5_A 267 RIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI------------EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMA 334 (382)
T ss_dssp HHHHHHTTSTTEEECSCSSSBCTTEEEEEETTS------------CHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHH
T ss_pred HHHHHHhhCCCeEEeCCcccCCCCEEEEEeCCc------------CHHHHHHHHHHCCEEEeccccccCCCCcccHHHHH
Confidence 777777765221111100 01244555655421 1456888888999998864
Q ss_pred --------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 406 --------GDNIMMSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 406 --------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
.+.+|++++..++++++++++++|+++++++++
T Consensus 335 ~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 335 CGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp TTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 257999988888999999999999999988765
No 145
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.90 E-value=1.4e-21 Score=197.71 Aligned_cols=336 Identities=15% Similarity=0.109 Sum_probs=201.6
Q ss_pred CCHHHHHHHHHHHhcCCc----ccccCcCCChHHHHHHHHHHHhcCcC-CCCeE--EEeCChhhHHHHHHHHHHHHHHh-
Q 013204 50 SEPRLVAAATAQLNTLPF----YHSFWNRTTKPSLDLAKELLEMFTAS-KMAKV--FFTNSGSEANDTQVKLVWYYNNA- 121 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~v--~~~~sGseA~~~Al~~~~~~~~~- 121 (447)
.++.+.+++.+++..... .+...........++++++++++... ..+++ ++++||++|++.++++++.....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~ 187 (514)
T 3mad_A 108 GDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARAT 187 (514)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhh
Confidence 567777777776643211 11110111223345666777776321 11466 99999999999999988765322
Q ss_pred cCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC
Q 013204 122 LGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 201 (447)
Q Consensus 122 ~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 201 (447)
+| ..+++|++..++|++........ |.. +..+++...++ .++++|++.+.
T Consensus 188 ~g-~~~d~Vi~~~~~~~~~~~~~~~~-G~~------------v~~v~~~~~~~-------------~d~~~Le~~i~--- 237 (514)
T 3mad_A 188 KG-ITAPEAVVPVSAHAAFDKAAQYF-GIK------------LVRTPLDADYR-------------ADVAAMREAIT--- 237 (514)
T ss_dssp HC-CSSCEEEEETTSCTHHHHHHHHH-TCE------------EEEECBCTTSC-------------BCHHHHHHHCC---
T ss_pred cC-CCCCeEEEeCccchHHHHHHHHc-CCe------------eEEeeeCCCCC-------------CCHHHHHHHhc---
Confidence 22 23478999888888765443332 221 11222211111 01477777764
Q ss_pred CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC-----cccc---ccccccCCCCCCeee--e
Q 013204 202 PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG-----RLGT---MFGCDKYSIKPDLVS--F 271 (447)
Q Consensus 202 ~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g-----~~g~---~~~~~~~~~~~d~v~--~ 271 (447)
+++++|++++.++.+|.+.+ +++|.++|++||++||+||+|+++. +.|. .+.....+ .|+++ +
T Consensus 238 -~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g--~d~~~~s~ 310 (514)
T 3mad_A 238 -PNTVVVAGSAPGYPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEG--VTSVSADT 310 (514)
T ss_dssp -TTEEEEEEETTCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTT--CCEEEECT
T ss_pred -cCCEEEEEeCCCCCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCC--CcEEEECc
Confidence 35788888888888888766 9999999999999999999998763 2332 22333344 36665 4
Q ss_pred cccCCCcccceeEEEeChhHHHHhhhcc--CCCC-ccC-cCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHH
Q 013204 272 AKALSSAYMPIGAILVSPEVSEVIHSQS--NTLG-SFS-HGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKF 344 (447)
Q Consensus 272 sK~l~gg~~~~g~~~~~~~~~~~~~~~~--~~~~-~~~-~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l 344 (447)
+|.+.++ .++|+++.+++.+....... ...+ .+. .....+.+....++..++++.+.. ++..++..++.+++
T Consensus 311 ~K~l~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l 389 (514)
T 3mad_A 311 HKYGYGA-KGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRL 389 (514)
T ss_dssp TTTTCCC-SSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCC-CCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5887776 69999998877554321100 0000 000 000112222233334444444333 45677888888888
Q ss_pred HHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee--CCEEEEecC-CCCCHHH
Q 013204 345 QDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS--GDNIMMSPP-FIMSPEE 421 (447)
Q Consensus 345 ~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--g~~iR~~~~-~~~t~e~ 421 (447)
++.|+++.+..++.. ...++.+..... ....+.+.|+++||++... ++.+|+++. ...++++
T Consensus 390 ~~~L~~~~g~~~~~~---~~~~~~~~~~~~------------~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~ 454 (514)
T 3mad_A 390 KAGVRAIPSLKILGD---PLWVIAVASDEL------------NIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGV 454 (514)
T ss_dssp HHHHHTSTTCEESSC---CSSEEEEECSSS------------CHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTH
T ss_pred HHHHhhCCCeEEeCC---CeEEEEEeCCCC------------CHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHH
Confidence 888887633222211 122444433211 1456889999999988543 367999987 4557799
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013204 422 VDELISKYGKALKATEE 438 (447)
Q Consensus 422 i~~~~~~l~~~l~~~~~ 438 (447)
|++++++|+++++++++
T Consensus 455 i~~~l~~L~~~l~~~~~ 471 (514)
T 3mad_A 455 VDRFLADLQDAVAQVRA 471 (514)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988764
No 146
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.90 E-value=4.9e-22 Score=195.38 Aligned_cols=331 Identities=15% Similarity=0.085 Sum_probs=211.4
Q ss_pred cCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEE-EeCChhhHHHHHHHHHHHHHHhcCC
Q 013204 46 ALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVF-FTNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 46 ~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~-~~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
.+++.++.+.+++.+++.+....+.. ....+...++++++++.+. .+.+.++ +++||++|++.+++.+.
T Consensus 14 ~~~p~p~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~l~~~la~~~g-~~~~~~~~~~~s~t~al~~~~~~l~-------- 83 (416)
T 3isl_A 14 IMTPGPVEVDPRVLRVMSTPVVGQFD-PAFTGIMNETMEMLRELFQ-TKNRWAYPIDGTSRAGIEAVLASVI-------- 83 (416)
T ss_dssp ECSSSSCCCCHHHHHHTTSCCCCTTS-HHHHHHHHHHHHHHHHHTT-CCCSEEEEEESCHHHHHHHHHHHHC--------
T ss_pred eecCCCcCcCHHHHHHhcccCCCCcc-HHHHHHHHHHHHHHHHHhC-CCCCcEEEecCcHHHHHHHHHHHhc--------
Confidence 35555555566666666542211110 1123456788888988874 3445555 88999999999998763
Q ss_pred CCcceEEEEcCCCccchhh-hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCC
Q 013204 125 PNKKKFIARQKSYHGSTLI-AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPE 203 (447)
Q Consensus 125 ~~~~~vi~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~ 203 (447)
.++++|++.+++||+.... .....|... ..++.+..+. .++++|++.+...
T Consensus 84 ~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~-------------~d~~~l~~~i~~~--- 135 (416)
T 3isl_A 84 EPEDDVLIPIYGRFGYLLTEIAERYGANV------------HMLECEWGTV-------------FDPEDIIREIKKV--- 135 (416)
T ss_dssp CTTCEEEEEESSHHHHHHHHHHHHTTCEE------------EEEECCTTCC-------------CCHHHHHHHHHHH---
T ss_pred CCCCEEEEecCCcccHHHHHHHHhcCCee------------EEEecCCCCC-------------CCHHHHHHHHhhC---
Confidence 3457899999999984322 222222211 1122211100 0147788887632
Q ss_pred cEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCcccc
Q 013204 204 TIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSAYMP 281 (447)
Q Consensus 204 ~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~~ 281 (447)
++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|.. ..... ...+|++++ +|.+.++ .+
T Consensus 136 ~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~d~~~~s~~K~l~g~-~g 205 (416)
T 3isl_A 136 KPKIVAMVHGETSTGRIHP----LKAIGEACRTEDALFIVDAVAT-IGGC--EVKVD--EWKIDAAIGGTQKCLSVP-SG 205 (416)
T ss_dssp CCSEEEEESEETTTTEECC----CHHHHHHHHHTTCEEEEECTTT-TTTS--CCCTT--TTTCSEEECCSSSTTCCC-SS
T ss_pred CCcEEEEEccCCCCceecC----HHHHHHHHHHcCCEEEEECCcc-ccCC--Ccchh--hcCCCEEEecCccccCCC-CC
Confidence 3467888888888887776 8999999999999999999987 4322 11122 234677765 5888777 68
Q ss_pred eeEEEeChhHHHHhhhcc------------------CCCC-------------ccCcCCCCCCcHHHHHHHHHHHHHHhh
Q 013204 282 IGAILVSPEVSEVIHSQS------------------NTLG-------------SFSHGFTYSGHPVSCAVAIEALKIYKE 330 (447)
Q Consensus 282 ~g~~~~~~~~~~~~~~~~------------------~~~~-------------~~~~~~t~~~~~~~~~aa~a~l~~~~~ 330 (447)
+|++++++++++.+.... .... ........+.+..+++++.++++.+..
T Consensus 206 ~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 285 (416)
T 3isl_A 206 MAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLE 285 (416)
T ss_dssp EEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999988776311 0000 000111334567777777788876654
Q ss_pred h---cHHHHHHHHHHHHHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee
Q 013204 331 R---NIVEQVNKIAPKFQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS 405 (447)
Q Consensus 331 ~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~ 405 (447)
. +..++++++.+++.+.|+++ +..+.... ...+.++.+.+.+.. ....+.+.|+++ ||.+.++
T Consensus 286 ~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~~gi~v~~g 353 (416)
T 3isl_A 286 EGLETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVVTCVEIPGGI-----------DGESVRDMLLAQFGIEIASS 353 (416)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTEEEEECCTTC-----------CHHHHHHHHHHHHCEECBCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCcEEEEeCCCCC-----------CHHHHHHHHHHhCCEEEecC
Confidence 3 56778888888898888875 33322111 112455566654221 145688888887 9998854
Q ss_pred -----CCEEEEecCCCCCHHH-HHHHHHHHHHHHHHH
Q 013204 406 -----GDNIMMSPPFIMSPEE-VDELISKYGKALKAT 436 (447)
Q Consensus 406 -----g~~iR~~~~~~~t~e~-i~~~~~~l~~~l~~~ 436 (447)
++.+|++++...++++ |++++++|+++++++
T Consensus 354 ~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 354 FGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp CSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence 3679999866666666 999999999998765
No 147
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.90 E-value=5.1e-22 Score=194.01 Aligned_cols=324 Identities=15% Similarity=0.136 Sum_probs=209.5
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCC-eEEEeCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMA-KVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~ 128 (447)
-+|++.+++.+..... ++ ..+.....++.+.+++.+. .+.+ ++++++||++|++.+++.+. .+++
T Consensus 29 ~~~~v~~a~~~~~~~~--~~---~~~~~~~~~l~~~la~~~~-~~~~~~v~~~~g~t~al~~~~~~~~--------~~gd 94 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLSN--FH---AELFRTMDEVKDGLRYIFQ-TENRATMCVSGSAHAGMEAMLSNLL--------EEGD 94 (396)
T ss_dssp CCHHHHHHTTSCCCCT--TC---HHHHHHHHHHHHHHHHHHT-CCCSCEEEESSCHHHHHHHHHHHHC--------CTTC
T ss_pred CCHHHHHHhccccccC--CC---hhHHHHHHHHHHHHHHHhC-CCCCcEEEECCcHHHHHHHHHHHhc--------CCCC
Confidence 4678887776544321 11 0112347788899998874 3555 79999999999999999773 3347
Q ss_pred eEEEEcCCCccchh-hhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEE
Q 013204 129 KFIARQKSYHGSTL-IAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAA 207 (447)
Q Consensus 129 ~vi~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~ 207 (447)
+|++.+++|++... ......|... ..++.+..+. .+++++++.+... ++++
T Consensus 95 ~vl~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~-------------~d~~~l~~~l~~~---~~~~ 146 (396)
T 2ch1_A 95 RVLIAVNGIWAERAVEMSERYGADV------------RTIEGPPDRP-------------FSLETLARAIELH---QPKC 146 (396)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCEE------------EEEECCTTSC-------------CCHHHHHHHHHHH---CCSE
T ss_pred eEEEEcCCcccHHHHHHHHHcCCce------------EEecCCCCCC-------------CCHHHHHHHHHhC---CCCE
Confidence 89999999998742 1222222211 1122211100 0137788777632 3457
Q ss_pred EEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCcccceeEE
Q 013204 208 FIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGAI 285 (447)
Q Consensus 208 vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~ 285 (447)
|++++.++.+|.+.+ +++|.++|++||+++|+||+|+ +|.. ..... ...+|++++| |.++++ .++|++
T Consensus 147 v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~Dea~~-~g~~--~~~~~--~~~~d~~~~s~~K~~~~~-~g~g~~ 216 (396)
T 2ch1_A 147 LFLTHGDSSSGLLQP----LEGVGQICHQHDCLLIVDAVAS-LCGV--PFYMD--KWEIDAVYTGAQKVLGAP-PGITPI 216 (396)
T ss_dssp EEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTT--TTTCCEEECCCC-CCCCC-SSCEEE
T ss_pred EEEECCCCCCceecC----HHHHHHHHHHcCCEEEEEcccc-ccCC--ccchh--hcCcCEEEEcCCccccCC-CCeEEE
Confidence 777777777777766 8899999999999999999997 6533 22222 2346887765 988876 688999
Q ss_pred EeChhHHHHhhhccCCCCcc----------------CcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHH
Q 013204 286 LVSPEVSEVIHSQSNTLGSF----------------SHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQD 346 (447)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~----------------~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~ 346 (447)
++++++++.+.....+.+.+ .....++.+..++.++.++++.+.+ ++..++++++++++.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~ 296 (396)
T 2ch1_A 217 SISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYE 296 (396)
T ss_dssp EECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999888775321000000 0112334567777888888886543 3456778888888888
Q ss_pred hHhhccCCCceeeEe--eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-CceEEee-----CCEEEEec-CCCC
Q 013204 347 GVKAFSDSPIIGEIR--GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GMLVRVS-----GDNIMMSP-PFIM 417 (447)
Q Consensus 347 ~L~~l~~~~~~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----g~~iR~~~-~~~~ 417 (447)
.|+++ +..+..... ..+.++.+.+.... ....+.+.|+++ ||.+.++ .+.+|+++ ++..
T Consensus 297 ~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~ 364 (396)
T 2ch1_A 297 GLGKM-GLDIFVKDPRHRLPTVTGIMIPKGV-----------DWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECS 364 (396)
T ss_dssp HHHHH-TCCBSSCSGGGBCTTEEEEECCTTC-----------CHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGC
T ss_pred HHHHC-CCeeccCCccccCCceEEEEcCCCC-----------CHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcC
Confidence 88876 333322111 12235556553211 145688888875 9998864 36799998 5677
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 013204 418 SPEEVDELISKYGKALKATE 437 (447)
Q Consensus 418 t~e~i~~~~~~l~~~l~~~~ 437 (447)
+++++++++++|++++++++
T Consensus 365 ~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 365 TVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp SHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998764
No 148
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.90 E-value=4.7e-22 Score=190.97 Aligned_cols=318 Identities=13% Similarity=0.047 Sum_probs=206.9
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcce
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~ 129 (447)
.+|++++++.+++... .+ ....+...++.+++++++. .+.+++++++||++|++.+++.+. .++++
T Consensus 12 ~~~~v~~a~~~~~~~~-~~----~~~~~~~~~l~~~la~~~g-~~~~~i~~~~g~t~a~~~~~~~~~--------~~gd~ 77 (352)
T 1iug_A 12 LHPKALEALARPQLHH-RT----EAAREVFLKARGLLREAFR-TEGEVLILTGSGTLAMEALVKNLF--------APGER 77 (352)
T ss_dssp CCHHHHHHHHSCCCCT-TS----HHHHHHHHHHHHHHHHHHT-CSSEEEEEESCHHHHHHHHHHHHC--------CTTCE
T ss_pred CCHHHHHHhccCCCCc-cC----HHHHHHHHHHHHHHHHHhC-CCCceEEEcCchHHHHHHHHHhcc--------CCCCe
Confidence 6899999988776421 11 1123446788899998874 345789999999999999999763 23478
Q ss_pred EEEEcCCCccchhhhh-cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEE
Q 013204 130 FIARQKSYHGSTLIAA-SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAF 208 (447)
Q Consensus 130 vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~v 208 (447)
|++.++.|++...... ...|... ..++.+..+.. + ++++++ +++++|
T Consensus 78 vl~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~~-----d--------~~~l~~-------~~~~~v 125 (352)
T 1iug_A 78 VLVPVYGKFSERFYEIALEAGLVV------------ERLDYPYGDTP-----R--------PEDVAK-------EGYAGL 125 (352)
T ss_dssp EEEEECSHHHHHHHHHHHHTTCEE------------EEEECCTTCCC-----C--------TTTSCC-------SSCSEE
T ss_pred EEEEeCCchhHHHHHHHHHcCCce------------EEEeCCCCCCC-----C--------HHHHhc-------cCCcEE
Confidence 9999999988751111 1122211 11222111000 0 133332 235577
Q ss_pred EEccccCCCCCccCChhHHHHHHHHHHhc--CCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCcccceeE
Q 013204 209 IAEPVIGAGGVIPPPATYFEKVQAVVKKY--DILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSAYMPIGA 284 (447)
Q Consensus 209 i~epv~~~~G~~~~~~~~l~~l~~l~~~~--g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~~~g~ 284 (447)
++++.++.+|.+.+ +++|.++|++| |+++|+||+|+ +|.. .+.... ..+|++++ +|.+.++ .++|+
T Consensus 126 ~~~~~~nptG~~~~----l~~i~~l~~~~~~~~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~~K~~~~~-~g~G~ 195 (352)
T 1iug_A 126 LLVHSETSTGALAD----LPALARAFKEKNPEGLVGADMVTS-LLVG--EVALEA--MGVDAAASGSQKGLMCP-PGLGF 195 (352)
T ss_dssp EEESEETTTTEECC----HHHHHHHHHHHCTTCEEEEECTTT-BTTB--CCCSGG--GTCSEEEEESSSTTCCC-SCEEE
T ss_pred EEEEecCCcceecC----HHHHHHHHHhhCCCCEEEEECCcc-ccCc--ceeccc--cCeeEEEecCcccccCC-CceeE
Confidence 88888888887776 89999999999 99999999997 5433 122222 23677754 6988776 57899
Q ss_pred EEeChhHHHHhhhccC------CCCcc-CcCCCCCCcHHHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHhHhhccCCC
Q 013204 285 ILVSPEVSEVIHSQSN------TLGSF-SHGFTYSGHPVSCAVAIEALKIYKER--NIVEQVNKIAPKFQDGVKAFSDSP 355 (447)
Q Consensus 285 ~~~~~~~~~~~~~~~~------~~~~~-~~~~t~~~~~~~~~aa~a~l~~~~~~--~~~~~~~~~~~~l~~~L~~l~~~~ 355 (447)
+++++++++.+..... ..... ....+++.++.+++++.++++.+.+. +..++++++.+++.+.|+++ +..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 274 (352)
T 1iug_A 196 VALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG-GLR 274 (352)
T ss_dssp EEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred EEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence 9999987654210000 00000 01124456777888788888876543 56677788888888888775 322
Q ss_pred ceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----CCEEEEecCCCCCHHHHHHHHHHHH
Q 013204 356 IIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----GDNIMMSPPFIMSPEEVDELISKYG 430 (447)
Q Consensus 356 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----g~~iR~~~~~~~t~e~i~~~~~~l~ 430 (447)
+.... ..+.++.+.+.+.. ....+.+.|.++||.+.++ .+.+|++++..++++++++++++|+
T Consensus 275 ~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 342 (352)
T 1iug_A 275 PVPKR-FSPAVAAFYLPEGV-----------PYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFR 342 (352)
T ss_dssp ESCSS-BCTTCEEEECCTTC-----------CHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHH
T ss_pred ccccc-cCCeEEEEEcCCCC-----------CHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHH
Confidence 21110 14556666664211 1456888999999999875 2679999988889999999999999
Q ss_pred HHHHHH
Q 013204 431 KALKAT 436 (447)
Q Consensus 431 ~~l~~~ 436 (447)
++++++
T Consensus 343 ~~~~~~ 348 (352)
T 1iug_A 343 EVLEEI 348 (352)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
No 149
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.89 E-value=9.5e-23 Score=201.42 Aligned_cols=304 Identities=10% Similarity=0.093 Sum_probs=197.1
Q ss_pred hHHHHHHHHHHHhcCcCCCCeEEEeCChhhHH--HHHHHHHHHHHHhcCCC---------CcceEEEEcCCCccchhhhh
Q 013204 77 KPSLDLAKELLEMFTASKMAKVFFTNSGSEAN--DTQVKLVWYYNNALGRP---------NKKKFIARQKSYHGSTLIAA 145 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~--~~Al~~~~~~~~~~~~~---------~~~~vi~~~~~yhg~~~~~~ 145 (447)
....++.+.+++++ ..+++++++++|+++++ +.+++.+.. +.+ .++.|++.+|+|+++.....
T Consensus 78 ~g~~~lr~~ia~~~-~~~~~~i~~t~G~~~al~~~~~~~~l~~-----~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~ 151 (427)
T 3ppl_A 78 DGIVDIRQIWADLL-GVPVEQVLAGDASSLNIMFDVISWSYIF-----GNNDSVQPWSKEETVKWICPVPGYDRHFSITE 151 (427)
T ss_dssp SCCHHHHHHHHHHH-TSCGGGEEECSSCHHHHHHHHHHHHHHH-----CCTTCSSCGGGSSCCEEEEEESCCHHHHHHHH
T ss_pred CCcHHHHHHHHHHh-CCCcceEEEeCCcHHHHHHHHHHHHHhc-----cCCcccccccCCCCCEEEEcCCCcHHHHHHHH
Confidence 34567888888887 35678999999999999 577776542 101 15789999999998865544
Q ss_pred cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEcc-ccCCCCCccCCh
Q 013204 146 SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEP-VIGAGGVIPPPA 224 (447)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~ep-v~~~~G~~~~~~ 224 (447)
..+.... .++.... + .++++|++.+. ..++++|++.| .++.+|. ..+.
T Consensus 152 ~~g~~~~-------------~v~~~~~------g--------~d~~~l~~~l~---~~~~~~v~~~p~~~NPtG~-~~~~ 200 (427)
T 3ppl_A 152 RFGFEMI-------------SVPMNED------G--------PDMDAVEELVK---NPQVKGMWVVPVFSNPTGF-TVTE 200 (427)
T ss_dssp HTTCEEE-------------EEEEETT------E--------ECHHHHHHHTT---STTEEEEEECCSSCTTTCC-CCCH
T ss_pred HcCCEEE-------------EeCCCCC------C--------CCHHHHHHHHh---cCCCeEEEECCCCCCCCCc-cCCH
Confidence 4322111 1111000 0 11377777763 24577888776 4555664 4566
Q ss_pred hHHHHHHHHH-HhcCCEEEEehhhcCCCccccc--c-c-cc------cCCCCCCeeeecccCCCcccceeEEEeChhHHH
Q 013204 225 TYFEKVQAVV-KKYDILFIADEVICAFGRLGTM--F-G-CD------KYSIKPDLVSFAKALSSAYMPIGAILVSPEVSE 293 (447)
Q Consensus 225 ~~l~~l~~l~-~~~g~~li~DEv~~g~g~~g~~--~-~-~~------~~~~~~d~v~~sK~l~gg~~~~g~~~~~~~~~~ 293 (447)
+.+++|.++| ++||+++|+||+|+++...+.. . . .. ..+....+.+|||.+..| +++|++++++++++
T Consensus 201 ~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G-~r~G~~~~~~~l~~ 279 (427)
T 3ppl_A 201 DVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAG-AGVSFFLTSAENRK 279 (427)
T ss_dssp HHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTT-SSCEEEECCHHHHH
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcC-ccEEEEEcCHHHHH
Confidence 7799999999 9999999999999985333321 1 1 11 222333455799985555 89999999999988
Q ss_pred HhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH---h--hhcHHHHHHHHHHHHHHhHhh-ccCCCceee-EeeeeeE
Q 013204 294 VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY---K--ERNIVEQVNKIAPKFQDGVKA-FSDSPIIGE-IRGTGLI 366 (447)
Q Consensus 294 ~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~---~--~~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~-~~~~g~~ 366 (447)
.+... ....++..+++++.++.++++.. . -.+..+.++++.+.+.+.|.+ +...+.+.. ....|.+
T Consensus 280 ~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~ 352 (427)
T 3ppl_A 280 WYTGH-------AGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYF 352 (427)
T ss_dssp HHHHH-------HHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSC
T ss_pred HHHHH-------hhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEE
Confidence 87632 22345667888887777766531 1 122344555555666666644 222222221 2234666
Q ss_pred EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----------CCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 367 LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----------GDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 367 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+.+.... ...+.+.|.++||.+.++ .+.+|+++... ++++|++++++|.+++++
T Consensus 353 ~~~~~~~~~------------~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~ 419 (427)
T 3ppl_A 353 ISLDVVPGT------------ASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVATCVLL 419 (427)
T ss_dssp EEEECSTTC------------HHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHH
T ss_pred EEEECCcch------------HHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHH
Confidence 777765421 445788899999999872 25699997644 999999999999999987
Q ss_pred HHH
Q 013204 436 TEE 438 (447)
Q Consensus 436 ~~~ 438 (447)
+..
T Consensus 420 ~~~ 422 (427)
T 3ppl_A 420 AAA 422 (427)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 150
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.89 E-value=2.2e-22 Score=193.22 Aligned_cols=321 Identities=14% Similarity=0.084 Sum_probs=209.4
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC-CCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS-KMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~ 128 (447)
.+|++++++.+++... .+ ....+...++++++++.+... +.+++++++||++|+..+++.+. + +
T Consensus 11 ~~~~v~~a~~~~~~~~-~~----~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~---------~-d 75 (353)
T 2yrr_A 11 IPERVQKALLRPMRGH-LD----PEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD---------R-G 75 (353)
T ss_dssp CCHHHHGGGGSCCCCT-TC----HHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS---------C-C
T ss_pred CCHHHHHHHhcccccc-cC----HHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc---------C-C
Confidence 6789998887766541 11 112345678899999887422 35689999999999999998763 2 6
Q ss_pred eEEEEcCCCccch-hhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEE
Q 013204 129 KFIARQKSYHGST-LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAA 207 (447)
Q Consensus 129 ~vi~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~ 207 (447)
+|++.++.||+.. .......|.. +..++.+..+. .+++++++.+... ++++
T Consensus 76 ~vl~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~-------------~d~~~l~~~l~~~---~~~~ 127 (353)
T 2yrr_A 76 PVLVLVNGAFSQRVAEMAALHGLD------------PEVLDFPPGEP-------------VDPEAVARALKRR---RYRM 127 (353)
T ss_dssp CEEEEECSHHHHHHHHHHHHTTCC------------EEEEECCTTSC-------------CCHHHHHHHHHHS---CCSE
T ss_pred cEEEEcCCCchHHHHHHHHHcCCc------------eEEEeCCCCCC-------------CCHHHHHHHHHhC---CCCE
Confidence 7899999998862 1111112211 11222211100 1147788877642 4567
Q ss_pred EEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCcccceeEE
Q 013204 208 FIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSAYMPIGAI 285 (447)
Q Consensus 208 vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~~~g~~ 285 (447)
|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ +|... .....+ .+|++++ +|.++++ .++|++
T Consensus 128 v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~--~~d~~~~s~~K~~~~~-~g~G~~ 197 (353)
T 2yrr_A 128 VALVHGETSTGVLNP----AEAIGALAKEAGALFFLDAVTT-LGMLP--FSMRAM--GVDYAFTGSQKCLSAP-PGLAPI 197 (353)
T ss_dssp EEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHH--TCSEEECCTTSTTCCC-SSCEEE
T ss_pred EEEEccCCCcceecC----HHHHHHHHHHcCCeEEEEcCcc-ccccc--cccccc--CceEEEecCcccccCC-CceEEE
Confidence 788888888887776 8999999999999999999995 65442 222222 3687765 5988776 478999
Q ss_pred EeChhHHHHhhhccCCC-------Ccc-CcCCCCCCcHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHhHhhccCC
Q 013204 286 LVSPEVSEVIHSQSNTL-------GSF-SHGFTYSGHPVSCAVAIEALKIYKER---NIVEQVNKIAPKFQDGVKAFSDS 354 (447)
Q Consensus 286 ~~~~~~~~~~~~~~~~~-------~~~-~~~~t~~~~~~~~~aa~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~ 354 (447)
++++++++.+....... +.. .....++.++.+++++.++++.+.+. +..++++++.+++++.|+++ +.
T Consensus 198 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 276 (353)
T 2yrr_A 198 AASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GF 276 (353)
T ss_dssp EECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred EECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 99999887764100000 000 01123455777777777888776543 45677888888888888775 32
Q ss_pred CceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----CEEEEecCCCCCHHHHH-HHHHH
Q 013204 355 PIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----DNIMMSPPFIMSPEEVD-ELISK 428 (447)
Q Consensus 355 ~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----~~iR~~~~~~~t~e~i~-~~~~~ 428 (447)
.+.......+.++.+.+.... ....+.+.|.++||.+.++. +.+|++++...++++++ +++++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~ 345 (353)
T 2yrr_A 277 RPYPKASPLPTVLVVRPPEGV-----------DADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKA 345 (353)
T ss_dssp EESCSSSBCTTEEEEECCTTC-----------CHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHH
T ss_pred ccccCccCCCeEEEEECCCCC-----------CHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHH
Confidence 222111113445556653211 14568889999999998653 57999987788999999 99999
Q ss_pred HHHHHHH
Q 013204 429 YGKALKA 435 (447)
Q Consensus 429 l~~~l~~ 435 (447)
|++++++
T Consensus 346 l~~~l~~ 352 (353)
T 2yrr_A 346 LDRALAL 352 (353)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988753
No 151
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.89 E-value=2e-21 Score=189.32 Aligned_cols=282 Identities=15% Similarity=0.141 Sum_probs=187.2
Q ss_pred CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCC
Q 013204 74 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGL 150 (447)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~ 150 (447)
.+.+...++++++++++.. ++.++++||++|++.+++.+. .++++|++.++.||+..... ....+.
T Consensus 49 ~~~~~~~~l~~~la~~~~~---~~~i~~~sGt~a~~~~~~~~~--------~~g~~vl~~~~~~~~~~~~~~~~~~~~g~ 117 (386)
T 1cs1_A 49 RGNPTRDVVQRALAELEGG---AGAVLTNTGMSAIHLVTTVFL--------KPGDLLVAPHDCYGGSYRLFDSLAKRGCY 117 (386)
T ss_dssp TCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHHHTTTSC
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHh--------CCCCEEEEecCCcHhHHHHHHHHHHhcCC
Confidence 3567788999999999732 255666788999999999763 33578999999998853221 111111
Q ss_pred ccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHH
Q 013204 151 PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKV 230 (447)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l 230 (447)
. +..++.. +++++++.+. +++++|+++++++.+|.+.+ +++|
T Consensus 118 ~------------~~~~~~~------------------d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i 159 (386)
T 1cs1_A 118 R------------VLFVDQG------------------DEQALRAALA----EKPKLVLVESPSNPLLRVVD----IAKI 159 (386)
T ss_dssp E------------EEEECTT------------------CHHHHHHHHH----TCCSEEEEECSCTTTCCCCC----HHHH
T ss_pred E------------EEEeCCC------------------CHHHHHHhhc----cCCcEEEEeCCCCCCCcccC----HHHH
Confidence 1 1112211 1477888776 25678889999999888876 9999
Q ss_pred HHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccce-eEEEeCh-hHHHHhhhccCCCCccC
Q 013204 231 QAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPI-GAILVSP-EVSEVIHSQSNTLGSFS 306 (447)
Q Consensus 231 ~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~-g~~~~~~-~~~~~~~~~~~~~~~~~ 306 (447)
.++|++||+++|+||+|+++... .. . ...+|++ +++|.+++++.++ |++++++ ++++.+... .
T Consensus 160 ~~l~~~~~~~li~De~~~~~~~~-~~--~---~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~-------~ 226 (386)
T 1cs1_A 160 CHLAREVGAVSVVDNTFLSPALQ-NP--L---ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWW-------A 226 (386)
T ss_dssp HHHHHHTTCEEEEECTTTCTTTC-CG--G---GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHH-------H
T ss_pred HHHHHHcCCEEEEECCCcccccC-Cc--c---ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHH-------H
Confidence 99999999999999999866432 11 1 1345666 6789998765565 8999886 787777531 2
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CCcee----------eEeeeeeEEEEEe
Q 013204 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SPIIG----------EIRGTGLILGTEF 371 (447)
Q Consensus 307 ~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~~~----------~~~~~g~~~~i~~ 371 (447)
...+...+++++.++.++++.+ +...+...++.+.+.+.|+++.. ++.+. ..++.|.++.+.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 304 (386)
T 1cs1_A 227 NNIGVTGGAFDSYLLLRGLRTL--VPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFEL 304 (386)
T ss_dssp HHHTCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEE
T ss_pred HhcCCCCCHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEE
Confidence 2224556888887777776643 22344555566666666655311 11100 0134577877776
Q ss_pred ecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe---e----------------------------CCEEEEecCCCCCHH
Q 013204 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV---S----------------------------GDNIMMSPPFIMSPE 420 (447)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~---~----------------------------g~~iR~~~~~~~t~e 420 (447)
... ...+.+.|.++||++.. + .+.+|+++++..+++
T Consensus 305 ~~~-------------~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~ 371 (386)
T 1cs1_A 305 DGD-------------EQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGED 371 (386)
T ss_dssp SSC-------------HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHH
T ss_pred CCC-------------HHHHHHHHHhCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHH
Confidence 531 23466778889999873 1 257999999977788
Q ss_pred HHHHHHHHHHHH
Q 013204 421 EVDELISKYGKA 432 (447)
Q Consensus 421 ~i~~~~~~l~~~ 432 (447)
+|+.+.+.|++.
T Consensus 372 ~i~~l~~al~~~ 383 (386)
T 1cs1_A 372 LIADLENGFRAA 383 (386)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777776654
No 152
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.89 E-value=9.5e-22 Score=192.69 Aligned_cols=333 Identities=13% Similarity=0.071 Sum_probs=205.4
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHh-cCCccccc--CcCCChHHHHHH----HHHHHhcCcCCCCeEEEeCChh
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLN-TLPFYHSF--WNRTTKPSLDLA----KELLEMFTASKMAKVFFTNSGS 105 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~~~~~--~~~~~~~~~~l~----~~l~~~~~~~~~~~v~~~~sGs 105 (447)
+.++|+.++ +++ +|++++++.+++. .....++. .....+...+++ +++++.+. .+ ...+++++|+
T Consensus 24 ~~~~~~~~~---~~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g-~~-~~~i~~~sGt 95 (405)
T 2vi8_A 24 AKIELIASE---NFV---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFG-AE-HANVQPHSGA 95 (405)
T ss_dssp HSEECCTTC---CCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT-CS-EEECCCSSHH
T ss_pred cceeeccCc---ccC---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhC-CC-ceEEEecCcH
Confidence 457888655 343 8999999999885 33221111 011123344444 57777763 22 2345567889
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh--hcccCCccccCCCCCCCCcceecCCC-CcccCCCCCCCh
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA--ASLSGLPALHQKFDLPAPFVLHTDCP-HYWRYAHPGETE 182 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 182 (447)
+|++.+++.+. .+++.|++.++.|++..... ....+.. . ....++.. ..+.
T Consensus 96 ~a~~~a~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~-~---------~~~~~~~~~~~~~-------- 149 (405)
T 2vi8_A 96 QANMAVYFTVL--------EHGDTVLGMNLSHGGHLTHGSPVNFSGVQ-Y---------NFVAYGVDPETHV-------- 149 (405)
T ss_dssp HHHHHHHHHHC--------CTTCEEEEECGGGTCCTTTTCTTSHHHHH-S---------EEEEECBCTTTCS--------
T ss_pred HHHHHHHHHhc--------CCCCEEEEecccccchhcccchhhhccce-e---------EEEecccccccCC--------
Confidence 99999999873 33478888887665542111 1111100 0 00111110 0000
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccC
Q 013204 183 EEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKY 262 (447)
Q Consensus 183 ~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~ 262 (447)
.+++++++.+... ++++|++.|.+. |...+ +++|.++|++||+++|+||+|+ +|+.+... ...
T Consensus 150 -----~d~~~l~~~i~~~---~~~~v~~~~~~~--~~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~--~~~ 212 (405)
T 2vi8_A 150 -----IDYDDVREKARLH---RPKLIVAAAAAY--PRIID----FAKFREIADEVGAYLMVDMAHI-AGLVAAGL--HPN 212 (405)
T ss_dssp -----BCHHHHHHHHHHH---CCSEEEECCSSC--CSCCC----HHHHHHHHHHHTCEEEEECTTT-HHHHHTTS--SCC
T ss_pred -----cCHHHHHHHHHhc---CCeEEEEeCCCC--CccCC----HHHHHHHHHHcCCEEEEEcccc-ccccccCc--CCC
Confidence 0147788777642 235666654332 32222 8999999999999999999998 55443211 111
Q ss_pred CC-CCCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCC-CCcHHHHHHHHHHHHHHhh---hcHHH
Q 013204 263 SI-KPDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY-SGHPVSCAVAIEALKIYKE---RNIVE 335 (447)
Q Consensus 263 ~~-~~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~~aa~a~l~~~~~---~~~~~ 335 (447)
.+ .+|++ +++|.++|+ .+ |++++++++++.+.... ...++ +.++..++++.++++.+.. ++..+
T Consensus 213 ~~~~~di~~~s~sK~~~g~-~g-G~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~ 283 (405)
T 2vi8_A 213 PVPYAHFVTTTTHKTLRGP-RG-GMILCQEQFAKQIDKAI-------FPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAK 283 (405)
T ss_dssp STTTCSEEEEESSSTTCCC-SC-EEEEECHHHHHHHHHHH-------TTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ccccCCEEEEeccccCCCC-CC-eEEEEcHHHHHHHHhhh-------cccccCCCCHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 12 47877 678999865 34 99999999888776421 11122 3466677776777876543 45678
Q ss_pred HHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----------
Q 013204 336 QVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---------- 405 (447)
Q Consensus 336 ~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------- 405 (447)
+++++.+++.+.|+++ +..+... .+.+.++.+.+..... ....+.+.|.++||.+.++
T Consensus 284 ~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~ 351 (405)
T 2vi8_A 284 RVVDNAKRLASALQNE-GFTLVSG-GTDNHLLLVDLRPQQL----------TGKTAEKVLDEVGITVNKNTIPYDPESPF 351 (405)
T ss_dssp HHHHHHHHHHHHHHHT-TCEEGGG-SCSSSEEEEECGGGTC----------CHHHHHHHHHHHTEECEEECCTTCSSCTT
T ss_pred HHHHHHHHHHHHHHhC-CCeEecC-CCCceEEEEEccCCCC----------CHHHHHHHHHHcCceeccCcCccccCCCC
Confidence 8888888998888876 3222111 1346677777753210 1445778888999998874
Q ss_pred -CCEEEEecCC----CCCHHHHHHHHHHHHHHHHHHH
Q 013204 406 -GDNIMMSPPF----IMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 406 -g~~iR~~~~~----~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
.+.+|++++. .++++++++++++|++++++++
T Consensus 352 ~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 352 VTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp TCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred CCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 2469999886 5789999999999999987664
No 153
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.89 E-value=4.2e-22 Score=197.04 Aligned_cols=361 Identities=15% Similarity=0.110 Sum_probs=200.4
Q ss_pred CCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCc----CCChHHHHHHHHHHHhcCcCCCCeEEEeCChh
Q 013204 30 VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWN----RTTKPSLDLAKELLEMFTASKMAKVFFTNSGS 105 (447)
Q Consensus 30 ~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGs 105 (447)
.++..|||+.++. +.+|++++++.+++.....+..... ...+...++.+++++++. .+.++++|++||+
T Consensus 16 ~~~~~~Ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~~~v~~~~g~t 88 (432)
T 3a9z_A 16 PNRKVYMDYNATT------PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIG-GKPQDIIFTSGGT 88 (432)
T ss_dssp --CCEECBTTTCC------CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHT-CCGGGEEEESCHH
T ss_pred CCCcEEeeCCccC------CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcC-CCcCeEEEeCChH
Confidence 4678899986552 5799999999998876321111000 012335688889998874 4567899999999
Q ss_pred hHHHHHHHHHHH-HHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCC----CCCCcceecCCCC-cccCCCCC
Q 013204 106 EANDTQVKLVWY-YNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFD----LPAPFVLHTDCPH-YWRYAHPG 179 (447)
Q Consensus 106 eA~~~Al~~~~~-~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~ 179 (447)
+|++.+++.+.. +.....++ +++|++++|+||++.....+...++.....+. .....+..++... .+.
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~-gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~----- 162 (432)
T 3a9z_A 89 ESNNLVIHSTVRCFHEQQTLQ-GRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQ----- 162 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSS-----
T ss_pred HHHHHHHHHHHhhhhhccccC-CccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCC-----
Confidence 999999997742 11100002 36788999999875211111111110000000 0001112222211 000
Q ss_pred CChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcC----------CEEEEehhhcC
Q 013204 180 ETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD----------ILFIADEVICA 249 (447)
Q Consensus 180 ~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g----------~~li~DEv~~g 249 (447)
.++++|++.+. +++++|+++++++.+|.+.+ +++|.++|++|| +++|+||+|.
T Consensus 163 --------~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~- 225 (432)
T 3a9z_A 163 --------VEVEDILAAVR----PTTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQA- 225 (432)
T ss_dssp --------CCHHHHHHTCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-
T ss_pred --------cCHHHHHHhcc----CCceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhh-
Confidence 01366666553 35788999999888888877 889999999999 9999999995
Q ss_pred CCccccccccccCCCCCCeeee--cccCCCcccceeEEEeChhH-HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHH
Q 013204 250 FGRLGTMFGCDKYSIKPDLVSF--AKALSSAYMPIGAILVSPEV-SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK 326 (447)
Q Consensus 250 ~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~ 326 (447)
+|... .... ...+|++++ +|.++ +++|++++++++ ...+.......+......+++.++.+++++.++++
T Consensus 226 ~~~~~--~~~~--~~~~d~~~~s~~K~~g---~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~ 298 (432)
T 3a9z_A 226 LGKRR--VDVE--DLGVDFLTIVGHKFYG---PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAD 298 (432)
T ss_dssp TTTSC--CCHH--HHCCSEEEEEGGGTTC---CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHH
T ss_pred hCCcc--cChh--hcCCCEEEEehhHhcC---CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHH
Confidence 54431 1111 234787754 89763 569999998875 22222100000000112245567888888878888
Q ss_pred HHhh--hcHHHHHHHHHHHHHHhHhhccCCCce--ee---EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHH----
Q 013204 327 IYKE--RNIVEQVNKIAPKFQDGVKAFSDSPII--GE---IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC---- 395 (447)
Q Consensus 327 ~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~--~~---~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l---- 395 (447)
.+.+ ++..++++++.+++.+.|+++....+. .. ....+.+..+.+...... ...+.+.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~i~ 368 (432)
T 3a9z_A 299 LVSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLR----------GYMVLAQCQTLL 368 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCC----------HHHHHHHCSSEE
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCc----------HHHHHHHhcCeE
Confidence 6654 456678888888888888775221111 00 112344555666532100 12232222
Q ss_pred -------------------HHcCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 396 -------------------EKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 396 -------------------~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
...|+......+.+|++++..+|++++++++++|++++++++
T Consensus 369 ~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~ 429 (432)
T 3a9z_A 369 ASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLE 429 (432)
T ss_dssp CBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 122221111236799999988899999999999999987654
No 154
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.89 E-value=1.6e-22 Score=197.92 Aligned_cols=341 Identities=15% Similarity=0.110 Sum_probs=190.4
Q ss_pred eCCCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCc----ccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCCh
Q 013204 29 DVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF----YHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSG 104 (447)
Q Consensus 29 d~dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sG 104 (447)
+.++..|||+.++ +..+|++.+++.+++.+... .+.......+...++++++++.+. .+++++++++||
T Consensus 17 ~~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~~~~~v~~~~g~ 89 (400)
T 3vax_A 17 RGSHMTYLDAAAT------TRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVS-AEPDELIFTSGA 89 (400)
T ss_dssp -----CCCCCCCC------SSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTT-CCGGGEEEESCH
T ss_pred ccCCcEEecCCCC------CCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcC-CCCCcEEEeCCH
Confidence 3567789998655 24689999999998864211 011101123446778888888873 456789999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcc-eEEEEcCCCccchhhhhcc--cCCccccCCCCCCCCcceecCCCCcccCCCCCCC
Q 013204 105 SEANDTQVKLVWYYNNALGRPNKK-KFIARQKSYHGSTLIAASL--SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 181 (447)
Q Consensus 105 seA~~~Al~~~~~~~~~~~~~~~~-~vi~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (447)
++|++.+++.+..+... + ++ .|++..+.|++........ .|.. +..++....+.
T Consensus 90 t~al~~~~~~l~~~~~~---~-gd~~Vl~~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~------- 146 (400)
T 3vax_A 90 TESNNIALLGLAPYGER---T-GRRHIITSAIEHKAVLEPLEHLAGRGFE------------VDFLTPGPSGR------- 146 (400)
T ss_dssp HHHHHHHHHTTHHHHHH---H-TCCEEEEETTSCHHHHHHHHHHHTTTCE------------EEEECCCTTCC-------
T ss_pred HHHHHHHHHHHHHhhcc---C-CCCEEEECccccHhHHHHHHHHHhcCCe------------EEEEccCCCCC-------
Confidence 99999999976422111 1 35 7888887777654332221 1211 11222211110
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccccc
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDK 261 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~ 261 (447)
.++++|++.+. +++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|+ ++... ...
T Consensus 147 ------~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~----~~~ 207 (400)
T 3vax_A 147 ------ISVEGVMERLR----PDTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKVP----GDL 207 (400)
T ss_dssp ------CCHHHHHTTCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTSG----GGG
T ss_pred ------cCHHHHHHhcC----CCceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCCC----cCh
Confidence 01366666553 35789999999988888776 8999999999999999999997 43322 122
Q ss_pred CCCCCCeeeec--ccCCCcccceeEEE-eChh-HH---HHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hc
Q 013204 262 YSIKPDLVSFA--KALSSAYMPIGAIL-VSPE-VS---EVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RN 332 (447)
Q Consensus 262 ~~~~~d~v~~s--K~l~gg~~~~g~~~-~~~~-~~---~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~ 332 (447)
... +|++++| | +.|+ .++|+++ ++++ +. ..+................+.++.+++++.++++.+.+ ++
T Consensus 208 ~~~-~d~~~~s~~K-~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~ 284 (400)
T 3vax_A 208 TTP-IDMISISGHK-IGAP-KGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQ 284 (400)
T ss_dssp GSC-CSEEEEETGG-GTSC-SSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHH
T ss_pred hhc-CcEEEEeHHH-hCCC-CceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHH
Confidence 233 8888655 9 4443 4688888 7762 11 11110000000000112345577777777778876654 45
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee------
Q 013204 333 IVEQVNKIAPKFQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------ 405 (447)
Q Consensus 333 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------ 405 (447)
..++.+++.+++.+.|+ +.+..+.... ...+.++.+.+... ....+.+.|. +||.+.++
T Consensus 285 ~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~L~-~gi~v~~g~~~~~~ 350 (400)
T 3vax_A 285 WQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHILNLSFEDV------------DAEAFLVTLK-DLVAVATGSASTSA 350 (400)
T ss_dssp HHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTEEEEECTTC------------CHHHHHHHHH-HHHHHTTTTEEEEE
T ss_pred HHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCEEEEEeCCC------------CHHHHHHHHh-cCcEEEecccccCC
Confidence 66777788888888877 4222211111 11233555554421 1456778888 88876542
Q ss_pred ------------------CCEEEEec-CCCCCHHHHHHHHHHHHHHHHH
Q 013204 406 ------------------GDNIMMSP-PFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 406 ------------------g~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+.+|+++ +..++++++++++++|++++++
T Consensus 351 ~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 351 SFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp EECCHHHHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred CCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 26799998 8889999999999999988754
No 155
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.89 E-value=8.7e-21 Score=186.37 Aligned_cols=305 Identities=12% Similarity=0.101 Sum_probs=198.6
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCC
Q 013204 45 TALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 45 ~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
+.+++.+|+.++++.. ....+.++ ....+...++++++++++ +.+++++++||++|+..+++.+.
T Consensus 28 ~~~~~~~~~~~~~~~~--~~~~~~y~--~~~~~~~~~l~~~la~~~---g~~~~~~~~~gt~a~~~al~~l~-------- 92 (412)
T 2cb1_A 28 AAYGFKTLEEGQERFA--TGEGYVYA--RQKDPTAKALEERLKALE---GALEAVVLASGQAATFAALLALL-------- 92 (412)
T ss_dssp SBCCCSSHHHHHHHHH--HCCSCSBT--TTCCHHHHHHHHHHHHHH---TCSEEEEESSHHHHHHHHHHTTC--------
T ss_pred ceeecCChHHHHHHhc--cccCcCcC--CCCChHHHHHHHHHHHHh---CCCcEEEECCHHHHHHHHHHHHh--------
Confidence 3567777776666554 22222222 224577889999999987 34589999999999999999652
Q ss_pred CCcceEEEEcCCCccchhhhh---cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC
Q 013204 125 PNKKKFIARQKSYHGSTLIAA---SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 201 (447)
Q Consensus 125 ~~~~~vi~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 201 (447)
.++++|++.++.|++...... ...|.. +..++.. +++|++.+.
T Consensus 93 ~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~------------~~~~~~~-------------------~~~l~~~i~--- 138 (412)
T 2cb1_A 93 RPGDEVVAAKGLFGQTIGLFGQVLSLMGVT------------VRYVDPE-------------------PEAVREALS--- 138 (412)
T ss_dssp CTTCEEEEETTCCHHHHHHHHHTTTTTTCE------------EEEECSS-------------------HHHHHHHCC---
T ss_pred CCCCEEEEeCCCchhHHHHHHHHHHHcCCE------------EEEECCC-------------------HHHHHHHhc---
Confidence 335789999999977543221 111111 1112210 367777664
Q ss_pred CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcc
Q 013204 202 PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAY 279 (447)
Q Consensus 202 ~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~ 279 (447)
+++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|++++... ......+|+++ ++|.+++++
T Consensus 139 -~~~~~v~~~~~~n~~G~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~~-----~~~~~~~di~~~S~~K~~~~~~ 208 (412)
T 2cb1_A 139 -AKTRAVFVETVANPALLVPD----LEALATLAEEAGVALVVDNTFGAAGALC-----RPLAWGAHVVVESLTKWASGHG 208 (412)
T ss_dssp -TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGTTTTSC-----CGGGGTCSEEEEETTTTTTCSS
T ss_pred -cCCeEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCCccccccC-----CccccCCeEEEECCcccccCCC
Confidence 36788999999888888876 9999999999999999999998653221 11224578886 789998765
Q ss_pred cceeEEEeCh----------------------------hHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhh
Q 013204 280 MPIGAILVSP----------------------------EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKER 331 (447)
Q Consensus 280 ~~~g~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~ 331 (447)
.++|+++..+ ++.+.++... ........+|..++.++..++.+ +
T Consensus 209 ~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~------~~~~g~~~~~~~a~~~~~~l~~l--~ 280 (412)
T 2cb1_A 209 SVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLG------LSLCGMALSPFNAYLLFQGLETV--A 280 (412)
T ss_dssp CCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHH------TTTTCCCCCHHHHHHHHHHGGGH--H
T ss_pred CcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHH------HHhcCCCCChHHhHHHHcCCchH--H
Confidence 6788877543 2333333210 01112245677777666666544 2
Q ss_pred cHHHHHHHHHHHHHHhHhhccCCCcee-e--------------EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHH
Q 013204 332 NIVEQVNKIAPKFQDGVKAFSDSPIIG-E--------------IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCE 396 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l~~~~~~~-~--------------~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (447)
...++..++.+++.+.|.+.+....+. . .++.+.++.+.+ . . ...+.+.+.
T Consensus 281 ~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-~------------~~~~~~~l~ 346 (412)
T 2cb1_A 281 LRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G-D------------LERASRFLG 346 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-S------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C-C------------HHHHHHHHH
Confidence 334555677788888887653322110 0 024677888877 3 2 334666777
Q ss_pred HcCceEEee-------------------------------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 013204 397 KHGMLVRVS-------------------------------GDNIMMSPPFIMSPEEVDELISKYGK 431 (447)
Q Consensus 397 ~~Gi~~~~~-------------------------------g~~iR~~~~~~~t~e~i~~~~~~l~~ 431 (447)
+.|+.+ .. .+.||+++...+++++|+.+.++|++
T Consensus 347 ~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 347 AIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp HCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred hCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 788886 32 25799999999999999999998864
No 156
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.89 E-value=1.2e-21 Score=191.67 Aligned_cols=285 Identities=15% Similarity=0.103 Sum_probs=185.2
Q ss_pred CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh---cccCC
Q 013204 74 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA---SLSGL 150 (447)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~---~~~~~ 150 (447)
...+...++++++++++. .+++++++||++|+..+++.+. .++++|++.++.||+...... ...|.
T Consensus 61 ~~~~~~~~l~~~la~~~g---~~~~i~~~sG~~a~~~~l~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~ 129 (398)
T 2rfv_A 61 LGNPTTDALEKKLAVLER---GEAGLATASGISAITTTLLTLC--------QQGDHIVSASAIYGCTHAFLSHSMPKFGI 129 (398)
T ss_dssp TCCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSSCHHHHHHHHTHHHHTTC
T ss_pred CCChHHHHHHHHHHHHhC---CCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCCcccHHHHHHHHHHHcCC
Confidence 367788899999999873 3478888999999999999763 334789999999988754331 11221
Q ss_pred ccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHH
Q 013204 151 PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKV 230 (447)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l 230 (447)
. +..++.. +++++++.+. +++++|+++++++.+|.+.+ +++|
T Consensus 130 ~------------~~~v~~~------------------d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i 171 (398)
T 2rfv_A 130 N------------VRFVDAA------------------KPEEIRAAMR----PETKVVYIETPANPTLSLVD----IETV 171 (398)
T ss_dssp E------------EEEECTT------------------SHHHHHHHCC----TTEEEEEEESSBTTTTBCCC----HHHH
T ss_pred E------------EEEeCCC------------------CHHHHHHhcC----CCCeEEEEECCCCCCCcccC----HHHH
Confidence 1 1122221 1366776664 36788999999888888776 9999
Q ss_pred HHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccce-eEEEeChhHHH-HhhhccCCCCccC
Q 013204 231 QAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPI-GAILVSPEVSE-VIHSQSNTLGSFS 306 (447)
Q Consensus 231 ~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~-g~~~~~~~~~~-~~~~~~~~~~~~~ 306 (447)
.++|++||+++|+||+|+.+ ..+... .+ .+|++ +++|.+++++.|+ |++++++++++ .+.. +.
T Consensus 172 ~~l~~~~~~~li~De~~~~~-~~~~~~---~~--~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~-------~~ 238 (398)
T 2rfv_A 172 AGIAHQQGALLVVDNTFMSP-YCQQPL---QL--GADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV-------GL 238 (398)
T ss_dssp HHHHHHTTCEEEEECTTTCT-TTCCGG---GG--TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT-------HH
T ss_pred HHHHHHcCCEEEEECCCccc-ccCCch---hh--CCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHH-------HH
Confidence 99999999999999999833 332221 12 35664 6789998755788 99999998876 4542 12
Q ss_pred cCC-CCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-----------cCCCceee----EeeeeeEEEEE
Q 013204 307 HGF-TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-----------SDSPIIGE----IRGTGLILGTE 370 (447)
Q Consensus 307 ~~~-t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-----------~~~~~~~~----~~~~g~~~~i~ 370 (447)
... +.+.++++++++.++++.+. ...++..++.+.+.+.|++. ...+.+.. .++.|.++.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~ 316 (398)
T 2rfv_A 239 KDITGGCMSPFNAWLTLRGVKTLG--IRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFE 316 (398)
T ss_dssp HHTTCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEE
T ss_pred HhCCCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEE
Confidence 222 45678888888888886432 22344455555666655542 11111111 12457787887
Q ss_pred eecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----------------------------CCEEEEecCCCCCHHHH
Q 013204 371 FADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----------------------------GDNIMMSPPFIMSPEEV 422 (447)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------------------------g~~iR~~~~~~~t~e~i 422 (447)
+.... .....+.+.+...|+.++++ .+.+|++++...++++|
T Consensus 317 ~~~~~----------~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i 386 (398)
T 2rfv_A 317 IAGGL----------EAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDII 386 (398)
T ss_dssp ETTHH----------HHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHH
T ss_pred EcCCH----------HHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHH
Confidence 75310 01222333333334443322 36799999999999999
Q ss_pred HHHHHHHHHH
Q 013204 423 DELISKYGKA 432 (447)
Q Consensus 423 ~~~~~~l~~~ 432 (447)
+++.++|+++
T Consensus 387 ~~l~~al~~~ 396 (398)
T 2rfv_A 387 NDLEHAIRKA 396 (398)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9998888753
No 157
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.88 E-value=9.7e-21 Score=189.32 Aligned_cols=333 Identities=13% Similarity=0.094 Sum_probs=206.1
Q ss_pred CCCCHHHHHHHHHHHhcCCcccc--cCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCC-
Q 013204 48 GGSEPRLVAAATAQLNTLPFYHS--FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR- 124 (447)
Q Consensus 48 G~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~- 124 (447)
+|.+|++.+++.+....+..+.. ...+..+...++++++++++. .+ ..+++++||++|+..|+++++.+...+|+
T Consensus 76 ~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g-~~-~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~ 153 (474)
T 1wyu_B 76 MKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTG-MD-AITLEPAAGAHGELTGILIIRAYHEDRGEG 153 (474)
T ss_dssp CCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHT-CS-EEECCCSSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred ccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHC-CC-ceeecChHHHHHHHHHHHHHHHHHHhcCCc
Confidence 46779998888876322111100 011122456778888888763 22 24567899999999999988765444554
Q ss_pred CCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCc
Q 013204 125 PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPET 204 (447)
Q Consensus 125 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~ 204 (447)
+++++||+.+ .+|+....+....|... ..+++...+. .++++|++.+. ++
T Consensus 154 ~~r~~Vlv~~-~~h~~~~~~~~~~G~~v------------v~v~~~~~~~-------------~d~~~L~~~i~----~~ 203 (474)
T 1wyu_B 154 RTRRVVLVPD-SAHGSNPATASMAGYQV------------REIPSGPEGE-------------VDLEALKRELG----PH 203 (474)
T ss_dssp TTCCEEEEET-TSCTHHHHHHHHTTCEE------------EEECBCTTSS-------------BCHHHHHHHCS----TT
T ss_pred cCCCEEEEeC-CcChhhHHHHHHCCCEE------------EEecCCCCCC-------------cCHHHHHHhhC----CC
Confidence 4456788776 56676655544433221 1222211110 01477777764 35
Q ss_pred EEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCC----c
Q 013204 205 IAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSS----A 278 (447)
Q Consensus 205 ~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~g----g 278 (447)
+++|++++.++ .|.+. +.+++|.++|++||+++|+||+|..+ ..|.. ....+ .+|++++ +|.+++ |
T Consensus 204 t~~v~~~~pn~-~G~~~---~~l~~i~~l~~~~g~~li~Dea~~~~-~~g~~-~~~~~--g~di~~~s~~K~~~~p~g~g 275 (474)
T 1wyu_B 204 VAALMLTNPNT-LGLFE---RRILEISRLCKEAGVQLYYDGANLNA-IMGWA-RPGDM--GFDVVHLNLHKTFTVPHGGG 275 (474)
T ss_dssp EEEEEECSSCT-TSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGG-TTTTC-CHHHH--TCSEEECCTTTTTCCCCTTS
T ss_pred ceEEEEECCCC-CcccC---CCHHHHHHHHHHcCCEEEEeCchhhh-hccCC-CcccC--CCcEEEEeCccccccCCCCC
Confidence 77888887654 66552 23999999999999999999999632 23311 11112 3788876 797753 3
Q ss_pred ccceeEEEeChhHHHHhhhc-----cC-------CCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcH---HHHHHHHHHH
Q 013204 279 YMPIGAILVSPEVSEVIHSQ-----SN-------TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI---VEQVNKIAPK 343 (447)
Q Consensus 279 ~~~~g~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~---~~~~~~~~~~ 343 (447)
++++|++++++++++.+... .. +........++++++++++++++.++.+..+.+ .++..++.++
T Consensus 276 G~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~ 355 (474)
T 1wyu_B 276 GPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARY 355 (474)
T ss_dssp CCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999987766410 00 000000112345678888888888875544444 6677788888
Q ss_pred HHHhHhhccCCCceeeEeeeeeE--EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee------CCEEEEecCC
Q 013204 344 FQDGVKAFSDSPIIGEIRGTGLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------GDNIMMSPPF 415 (447)
Q Consensus 344 l~~~L~~l~~~~~~~~~~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------g~~iR~~~~~ 415 (447)
+.+.|+++ +..++. +.+.+ +.+.+.. . . ....+.++|+++||++... .+.+|++++.
T Consensus 356 l~~~L~~~-g~~~~~---~~~~~~~~~~~~~~-~-~---------~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~ 420 (474)
T 1wyu_B 356 LKELLKEK-GYRVPY---DGPSMHEFVAQPPE-G-F---------RALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTE 420 (474)
T ss_dssp HHHHHHHT-TCBCSS---CSSCCSCEEEBCST-T-C---------CHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCT
T ss_pred HHHHHhhc-CcEecC---CCCcceEEEEEcCC-C-C---------CHHHHHHHHHHCCccccccccccccCCEEEEEeec
Confidence 88888875 332211 11111 2233311 1 0 1456889999999985321 3579999998
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 013204 416 IMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 416 ~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+|++++++++++|++++++
T Consensus 421 ~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 421 TEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp TSCHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999998865
No 158
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.88 E-value=2.4e-22 Score=203.57 Aligned_cols=361 Identities=14% Similarity=0.034 Sum_probs=196.7
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcC----cCCCCeEEEeCChhhHHHHHHHHHHHHHH
Q 013204 45 TALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFT----ASKMAKVFFTNSGSEANDTQVKLVWYYNN 120 (447)
Q Consensus 45 ~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~v~~~~sGseA~~~Al~~~~~~~~ 120 (447)
...++.+|++++++.+++....+ +....+..+....+++.+.+.+. ..+.+++++++||++|+..+++.+....
T Consensus 111 g~~~~~~~~~v~a~~~~~~~~~y-~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~- 188 (533)
T 3f6t_A 111 TELGLNRDKVVAEWVNGAVANNY-PVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENH- 188 (533)
T ss_dssp HTTCCCHHHHHHHHHHHHHTCSC-CSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTT-
T ss_pred CCCCcCCcHHHHHHHHHHHhCCC-CCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhh-
Confidence 34455689999988888864322 21223344555566666644411 1124699999999999999998632110
Q ss_pred hcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh
Q 013204 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 200 (447)
Q Consensus 121 ~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 200 (447)
.. .+++.|++.+++|++............ ..+++.... ..+ + ..++++|++.+.
T Consensus 189 -l~-~~gd~Viv~~p~~~~~~~~~~~~g~~~-------------~~v~~~~~~-----~~~---~-~~d~~~l~~~l~-- 242 (533)
T 3f6t_A 189 -LL-KKGDKIAINEPIFTPYLRIPELKDYEL-------------VEVDLHSYE-----KND---W-EIEPNEIEKLKD-- 242 (533)
T ss_dssp -SS-CTTCEEEEESSCCHHHHTSGGGGGSEE-------------EEECCCEET-----TTT---S-EECHHHHHHHSC--
T ss_pred -cc-CCcCEEEEcCCCcHHHHHHHHHcCCeE-------------EEEEecCCc-----ccC---C-CCCHHHHHHHhC--
Confidence 01 234789999999988754433322111 111111000 000 0 001366776653
Q ss_pred CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHH-hcCCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcc
Q 013204 201 GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVK-KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAY 279 (447)
Q Consensus 201 ~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~-~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~ 279 (447)
+ ++++|+++..++.+| ...+.+.+++|.++|+ +||+++|+||+|.++...+........+....+.+|||.++..+
T Consensus 243 -~-~~k~v~l~~p~NPtG-~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 319 (533)
T 3f6t_A 243 -P-SIKALIVVNPTNPTS-KEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTG 319 (533)
T ss_dssp -T-TEEEEEEESSCTTTC-BCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGG
T ss_pred -C-CCeEEEEeCCCCCCc-cccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcc
Confidence 3 455555544444455 4557788999999999 69999999999998754332221111122234457899987444
Q ss_pred cceeEEEeChh-----HHHHhhh--------c----cC-------------CCCccCcCCCCCCcHHHHHH----HHHHH
Q 013204 280 MPIGAILVSPE-----VSEVIHS--------Q----SN-------------TLGSFSHGFTYSGHPVSCAV----AIEAL 325 (447)
Q Consensus 280 ~~~g~~~~~~~-----~~~~~~~--------~----~~-------------~~~~~~~~~t~~~~~~~~~a----a~a~l 325 (447)
+|+|+++++++ +++.+.. . .. ..+......+.+.+++++.+ ++++|
T Consensus 320 ~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L 399 (533)
T 3f6t_A 320 WRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHL 399 (533)
T ss_dssp GCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHH
Confidence 89999999776 3332200 0 00 00112222344556665555 33333
Q ss_pred H------HH--hhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCC--CCCCCCC---CcchHHHHH
Q 013204 326 K------IY--KERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKS--PNEPFPP---EWGIGAYFG 392 (447)
Q Consensus 326 ~------~~--~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~--~~~~~~~---~~~~~~~~~ 392 (447)
. .. ..++..+.++++.+.+.+.|. + ++.......|.+..+++..... ....+.. .......+.
T Consensus 400 ~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~---~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~ 475 (533)
T 3f6t_A 400 LTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-A---PKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFL 475 (533)
T ss_dssp TTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-C---CCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHHhcC-C---CccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHH
Confidence 2 00 012344556666666666665 3 2111112334455555542000 0000000 000022344
Q ss_pred HH-HHHcCceEEee------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 013204 393 AQ-CEKHGMLVRVS------GDNIMMSPPFIMSPEEVDELISKYGKALKATEERVK 441 (447)
Q Consensus 393 ~~-l~~~Gi~~~~~------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~ 441 (447)
.+ +.++||++.++ .+.+|++.. .+++++|++++++|.+++++++++.+
T Consensus 476 ~~ll~~~GV~v~pg~~f~~~~~~iRls~a-~~~~e~i~~~i~~L~~~l~~~~~~~~ 530 (533)
T 3f6t_A 476 LKLAEKNGVVLVDGVGFGAKPGELRVSQA-NLPTEDYALIGKQVLELLKEYYEEFK 530 (533)
T ss_dssp HHHHHHTTSSSCTTEEECSSTTEEEEESS-SSCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCEEEeCCcccCCCCCEEEEEEe-eCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 45789998864 257999953 36999999999999999998876553
No 159
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.88 E-value=1.4e-21 Score=194.19 Aligned_cols=339 Identities=9% Similarity=0.020 Sum_probs=194.4
Q ss_pred CCCE-EEecCCccccccCC-CCCHHHHHHHHHH---Hh----cCCcccccCcCCChHHHHHHHHHHHhcCcCC-----CC
Q 013204 31 NGKK-YLDSLAGLWCTALG-GSEPRLVAAATAQ---LN----TLPFYHSFWNRTTKPSLDLAKELLEMFTASK-----MA 96 (447)
Q Consensus 31 dg~~-~lD~~~~~~~~~lG-~~~p~v~~a~~~~---~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~ 96 (447)
|++. .+||..+. ++. .++|.+.+++.++ +. .....+. +.....++.+.+++++.... .+
T Consensus 46 ~~~~~~i~l~~g~---~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~----~~~G~~~lr~~ia~~l~g~~~~~~~~~ 118 (448)
T 3meb_A 46 DTNPKKVNLGVGA---YRDESGKPWILPAVKEAEAIISSDLSKYNKEYP----PVAGFPLFLEAAQFLMFGKDSKAAQEG 118 (448)
T ss_dssp CCCTTCEEESSCC---CCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCC----CTTCCHHHHHHHHHHHHCTTCHHHHTT
T ss_pred CCCCCeEEeeccc---ccCCCCCEechHHHHHHHHHHhhcccCCCCCCC----CCcchHHHHHHHHHHhcCCCccccCcC
Confidence 4443 68887763 322 2444445554444 22 1111111 22334566666666652223 57
Q ss_pred eEEE--eCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh----cccCCccccCCCCCCCCcceecCCC
Q 013204 97 KVFF--TNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA----SLSGLPALHQKFDLPAPFVLHTDCP 170 (447)
Q Consensus 97 ~v~~--~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
++++ ++||++|+..++.+.... .+++.|++.+++|+++..... ..+... ..+++.
T Consensus 119 ~i~~~~t~ggt~al~l~~~~~~~~------~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v-------------~~~~~~ 179 (448)
T 3meb_A 119 RIASCQSLSGTGSLHIGFEFLHLW------MPKAEFYMPSTTWPNHYGIYDKVFNKLKVPY-------------KEYTYL 179 (448)
T ss_dssp CEEEEEESHHHHHHHHHHHHHHHH------CTTCCEEEESSCCTHHHHHHHHHHCTTTSCC-------------EEECCB
T ss_pred cEEEEECCcHHHHHHHHHHHHHHh------CCCCEEEECCCCCHhHHHHHHhhHHhCCCeE-------------EEEecc
Confidence 8999 999999999866543322 234789999999988754444 222111 111110
Q ss_pred Ccc-cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcC
Q 013204 171 HYW-RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA 249 (447)
Q Consensus 171 ~~~-~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g 249 (447)
+.. .+ . .+++++++.+....+ ...++++...++.+| ..++.+.+++|.++|++||+++|+||+|.+
T Consensus 180 ~~~~~~---~--------~d~e~l~~~l~~~~~-~~~~v~~~~p~NPtG-~~~~~~~l~~i~~l~~~~~~~li~Deay~~ 246 (448)
T 3meb_A 180 RKDGEL---E--------IDFSNTKKDIQSAPE-KSIFLFHACAHNPSG-IDFTEAQWKELLPIMKEKKHIAFFDSAYQG 246 (448)
T ss_dssp CTTSCS---S--------BCHHHHHHHHHHSCT-TCEEEEESSSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTT
T ss_pred ccccCC---C--------cCHHHHHHHHHhCCC-CcEEEEeCCCCCCCC-cCCCHHHHHHHHHHHHHCCCEEEEeccccc
Confidence 000 00 0 014778887765333 344545444444455 456788999999999999999999999998
Q ss_pred CCcccc---ccccccC-CCCCC---eeeecccCCCcccceeEE--Ee--------C-h----hHHHHhhhccCCCCccCc
Q 013204 250 FGRLGT---MFGCDKY-SIKPD---LVSFAKALSSAYMPIGAI--LV--------S-P----EVSEVIHSQSNTLGSFSH 307 (447)
Q Consensus 250 ~g~~g~---~~~~~~~-~~~~d---~v~~sK~l~gg~~~~g~~--~~--------~-~----~~~~~~~~~~~~~~~~~~ 307 (447)
|+..+. .+....+ +..++ +.++||.++..++++|++ ++ + + ++++.+.. ...
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~-------~~~ 319 (448)
T 3meb_A 247 FATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTL-------QIR 319 (448)
T ss_dssp TSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHH-------HHH
T ss_pred ccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHH-------HHh
Confidence 876541 1222111 22345 336899998544899998 65 3 4 45555432 112
Q ss_pred CCCCCCcHHHHHHHHHHHHHHh--------hhcHHHHHHHHHHHHHHhHhhccCCCc------eeeEeeeee-EEEEEee
Q 013204 308 GFTYSGHPVSCAVAIEALKIYK--------ERNIVEQVNKIAPKFQDGVKAFSDSPI------IGEIRGTGL-ILGTEFA 372 (447)
Q Consensus 308 ~~t~~~~~~~~~aa~a~l~~~~--------~~~~~~~~~~~~~~l~~~L~~l~~~~~------~~~~~~~g~-~~~i~~~ 372 (447)
..+...+.+++.++.++|+... -++..++++++++++.+.|+++ ..+. .......+. +..+.+.
T Consensus 320 ~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~ 398 (448)
T 3meb_A 320 KTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKR-KTPGPGSKGTWDHILTAIGMFTFTGLT 398 (448)
T ss_dssp TTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCSTTTCCCTHHHHCCSSEEECCCC
T ss_pred cccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCcCcccccceeCCCceEEEecCCC
Confidence 2344556677777766654211 1344567777778888888765 1111 111122232 3222221
Q ss_pred cCCCCCCCCCCCcchHHHHHHHH-HHcCceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 373 DNKSPNEPFPPEWGIGAYFGAQC-EKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
. .+...+ .++||++.++.. ||+.. ..++++|++++++|++++++
T Consensus 399 ---------------~-~~~~~ll~~~gV~v~~G~g--Ris~a-~~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 399 ---------------P-EHVDYLKEKWSIYLVKAGG--RMSMC-GLTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp ---------------H-HHHHHHHHHHCEEECSGGG--EEEGG-GCCTTTHHHHHHHHHHHHHH
T ss_pred ---------------H-HHHHHHHHhCCEEEeCCCc--EEEEe-cCCHHHHHHHHHHHHHHHHh
Confidence 1 244444 567999988532 88853 34788899999999999873
No 160
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.88 E-value=4e-20 Score=185.98 Aligned_cols=344 Identities=13% Similarity=0.083 Sum_probs=205.3
Q ss_pred CCHHHHHHHHHHHhcCC----cccccCcCCChHHHHHHHHHHHhcC-cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCC
Q 013204 50 SEPRLVAAATAQLNTLP----FYHSFWNRTTKPSLDLAKELLEMFT-ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
.++++++++.+.+.... ..++...+..+....+++.+.+.+. +.+++++++++||++|+..+++.+. .
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-------~ 179 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLI-------R 179 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHC-------C
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHc-------C
Confidence 46678888888776632 1222222333444455555544432 2467899999999999999999762 0
Q ss_pred CCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh--CC
Q 013204 125 PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE--GP 202 (447)
Q Consensus 125 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~ 202 (447)
..++.|++.++.|+++.......+.... .+++.....+ . .++++|++.+... ..
T Consensus 180 ~~gd~Vlv~~p~y~~~~~~~~~~g~~~~-------------~~~~~~~~~~---~--------~d~~~l~~~l~~~~~~~ 235 (500)
T 3tcm_A 180 NEKDGILVPIPQYPLYSASIALHGGALV-------------PYYLNESTGW---G--------LETSDVKKQLEDARSRG 235 (500)
T ss_dssp STTEEEEEEESCCTHHHHHHHHTTCEEE-------------EEECBTTTTS---B--------CCHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCcHhHHHHHHHcCCEEE-------------EEecccccCC---C--------CCHHHHHHHHHHHHhcC
Confidence 1347899999999887655444332111 1111100000 0 0147788777642 11
Q ss_pred CcEEE-EEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc-cc-cc----ccCCC-C--CC-ee--
Q 013204 203 ETIAA-FIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT-MF-GC----DKYSI-K--PD-LV-- 269 (447)
Q Consensus 203 ~~~a~-vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~-~~-~~----~~~~~-~--~d-~v-- 269 (447)
.++++ +++.| ++.+| .+.+.+.+++|.++|++||+++|+||+|.++...+. .+ .+ ..++. . .+ ++
T Consensus 236 ~~~k~ivl~~p-~NPtG-~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~ 313 (500)
T 3tcm_A 236 INVRALVVINP-GNPTG-QVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQ 313 (500)
T ss_dssp CEEEEEEEESS-CTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEE
T ss_pred CCceEEEEECC-CCCCc-ccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEe
Confidence 24444 45555 44455 455788899999999999999999999997644321 11 11 11221 1 22 33
Q ss_pred eecccC-CCcccceeEEEe---ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHH-----------HHh-hhcH
Q 013204 270 SFAKAL-SSAYMPIGAILV---SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK-----------IYK-ERNI 333 (447)
Q Consensus 270 ~~sK~l-~gg~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~-----------~~~-~~~~ 333 (447)
++||++ +..++++|++++ ++++++.+... . ..+++.++++++++..+++ ..+ .+.+
T Consensus 314 S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~-------~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 385 (500)
T 3tcm_A 314 SVSKGYYGECGKRGGYFEITGFSAPVREQIYKI-------A-SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGI 385 (500)
T ss_dssp ESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHH-------H-HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHH
T ss_pred cCCccCCCCCccceEEEEEeCCCHHHHHHHHHH-------H-hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHH
Confidence 689998 433389999998 88888887632 1 1245567777777766664 222 2445
Q ss_pred HHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEE-EEEeecCCCCCC--CCCCCcchHHHH-HHHHHHcCceEEeeC---
Q 013204 334 VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLIL-GTEFADNKSPNE--PFPPEWGIGAYF-GAQCEKHGMLVRVSG--- 406 (447)
Q Consensus 334 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~-~i~~~~~~~~~~--~~~~~~~~~~~~-~~~l~~~Gi~~~~~g--- 406 (447)
.++++++.+.+.+.|+++ +.+......|.++ .+.+..+..... ..... .....+ .+.|.++||++.++.
T Consensus 386 ~~~l~~~~~~l~~~L~~~---~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~-~~~~~~~~~ll~~~gI~v~pg~~f~ 461 (500)
T 3tcm_A 386 LASLARRAKALEHAFNKL---EGITCNEAEGAMYVFPQICLPQKAIEAAKAANK-APDAFYALRLLESTGIVVVPGSGFG 461 (500)
T ss_dssp HHHHHHHHHHHHHHHHTS---TTEECCCCCBTTEECCEECCCHHHHHHHHHHTS-CHHHHHHHHHHHHHCEECEESTTTC
T ss_pred HHHHHHHHHHHHHHHhcC---CCcEEecCCeEEEEeeeecCchhhHHHHHhcCC-CcHHHHHHHHHHHCCEEEEeCcccC
Confidence 677777888888888765 3333344455433 322321100000 00000 001222 355667899998752
Q ss_pred -----CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013204 407 -----DNIMMSPPFIMSPEEVDELISKYGKALKATEERV 440 (447)
Q Consensus 407 -----~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 440 (447)
..+|++.. +++++|++++++|.++++++.++.
T Consensus 462 ~~~g~~~iRis~~--~~~e~i~~~i~~l~~~~~~~~~~~ 498 (500)
T 3tcm_A 462 QVPGTWHFRCTIL--PQEDKIPAVISRFTVFHEAFMSEY 498 (500)
T ss_dssp CCTTCCBEEEESC--SCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 35999955 899999999999999999887764
No 161
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.88 E-value=1.8e-20 Score=183.34 Aligned_cols=282 Identities=12% Similarity=0.061 Sum_probs=186.2
Q ss_pred CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhc---ccCC
Q 013204 74 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAAS---LSGL 150 (447)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~---~~~~ 150 (447)
...+...++++++++++. .+++++++||++|+..+++.+. .++++|++.++.||+....... ..+.
T Consensus 62 ~~~~~~~~l~~~la~~~g---~~~~i~~~sG~~a~~~~l~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~~~g~ 130 (398)
T 1gc0_A 62 ISNPTLNLLEARMASLEG---GEAGLALASGMGAITSTLWTLL--------RPGDEVLLGNTLYGCTFAFLHHGIGEFGV 130 (398)
T ss_dssp -CCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCSHHHHHHHHTGGGGTC
T ss_pred CCChHHHHHHHHHHHHhC---CCcEEEECCHHHHHHHHHHHHh--------cCCCEEEEeCCCchhHHHHHHHHHHHcCC
Confidence 367788899999999873 3478889999999999999763 3347899999999987543321 1111
Q ss_pred ccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHH
Q 013204 151 PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKV 230 (447)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l 230 (447)
. +..++.. +++++++.+. +++++|+++++++.+|.+.+ +++|
T Consensus 131 ~------------~~~~~~~------------------d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i 172 (398)
T 1gc0_A 131 K------------LRHVDMA------------------DLQALEAAMT----PATRVIYFESPANPNMHMAD----IAGV 172 (398)
T ss_dssp E------------EEEECTT------------------CHHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHH
T ss_pred E------------EEEECCC------------------CHHHHHHhcC----CCCeEEEEECCCCCCccccc----HHHH
Confidence 1 1112211 1366776664 36789999999888888876 9999
Q ss_pred HHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccce-eEEEeChhHHH-HhhhccCCCCccC
Q 013204 231 QAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPI-GAILVSPEVSE-VIHSQSNTLGSFS 306 (447)
Q Consensus 231 ~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~-g~~~~~~~~~~-~~~~~~~~~~~~~ 306 (447)
.++|++||+++|+||+|+.+ ..+... .++ .|++ +++|.+++++.++ |+++++++.++ .+.. ..
T Consensus 173 ~~l~~~~~~~li~D~~~~~~-~~~~~~---~~~--~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~-------~~ 239 (398)
T 1gc0_A 173 AKIARKHGATVVVDNTYCTP-YLQRPL---ELG--ADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQ-------GL 239 (398)
T ss_dssp HHHHGGGTCEEEEECTTTHH-HHCCGG---GGT--CSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHT-------HH
T ss_pred HHHHHHcCCEEEEECCCccc-ccCCch---hhC--ceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHH-------Hh
Confidence 99999999999999999733 322221 123 4655 6789999865777 88889988665 4431 12
Q ss_pred cC-CCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CC---------cee-eEeeeeeEEEEE
Q 013204 307 HG-FTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SP---------IIG-EIRGTGLILGTE 370 (447)
Q Consensus 307 ~~-~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~---------~~~-~~~~~g~~~~i~ 370 (447)
.. .+...++++++++.++++.+ +...++..++.+.+.+.|+++.. ++ +.. ..++.|.++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 317 (398)
T 1gc0_A 240 KDMTGAVLSPHDAALLMRGIKTL--NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFE 317 (398)
T ss_dssp HHHTCCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEE
T ss_pred hccCCCCCCHHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEE
Confidence 22 24556888888877777643 23345556666666666655311 01 000 012456777776
Q ss_pred eecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe---e----------------------------CCEEEEecCCCCCH
Q 013204 371 FADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV---S----------------------------GDNIMMSPPFIMSP 419 (447)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~---~----------------------------g~~iR~~~~~~~t~ 419 (447)
+... .....+.+.+.|+.... + .+.||+++.+..++
T Consensus 318 l~~~-------------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~ 384 (398)
T 1gc0_A 318 LKGG-------------IGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDID 384 (398)
T ss_dssp ETTH-------------HHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHH
T ss_pred ECCC-------------HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHH
Confidence 6421 12345566677776643 1 25799999999999
Q ss_pred HHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKA 432 (447)
Q Consensus 420 e~i~~~~~~l~~~ 432 (447)
++|+.+.++|+++
T Consensus 385 ~~i~~l~~al~~~ 397 (398)
T 1gc0_A 385 DLLADVQQALKAS 397 (398)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 162
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.6e-21 Score=193.87 Aligned_cols=336 Identities=14% Similarity=0.092 Sum_probs=202.2
Q ss_pred CCHHHHHHHHHHHhcCCcccc----cCcCCChHHHHHHHHHHHhcCcC-CCCeEEEeCChhhHHHHHHHHHHHHHHh-cC
Q 013204 50 SEPRLVAAATAQLNTLPFYHS----FWNRTTKPSLDLAKELLEMFTAS-KMAKVFFTNSGSEANDTQVKLVWYYNNA-LG 123 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~-~~~~v~~~~sGseA~~~Al~~~~~~~~~-~~ 123 (447)
+++.+.+++.+++........ .+.+..+...++.+++++++... +.+.+++++||++|+..+++.++.+... .|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g 155 (497)
T 3mc6_A 76 GGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRG 155 (497)
T ss_dssp CCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSC
T ss_pred CchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 568899999888876322111 11112233446667777776432 3568999999999999999988765332 22
Q ss_pred CCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhHHHHHHHHHHHHHHHhhCC
Q 013204 124 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEEYSTRLANNLEDLILKEGP 202 (447)
Q Consensus 124 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~ 202 (447)
. .++.|++..+.|... ..+....|... ..+++.. .++.+ +++|++.+.
T Consensus 156 ~-~~~~Vi~~~~~h~~~-~~~~~~~G~~~------------~~v~~~~~~~~~d-------------~~~l~~~i~---- 204 (497)
T 3mc6_A 156 I-TEPEIIAPVTAHAGF-DKAAYYFGMKL------------RHVELDPTTYQVD-------------LGKVKKFIN---- 204 (497)
T ss_dssp C-SSCEEEEETTSCHHH-HHHHHHSCCEE------------EEECBCTTTCSBC-------------TTTTGGGCC----
T ss_pred C-CCceEEEeCCccHHH-HHHHHHcCCeE------------EEEecCcccCcCC-------------HHHHHHHHh----
Confidence 1 235677766655444 33333333221 1222211 11100 255555553
Q ss_pred CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc-----cc----ccccccCCCCCCeeeec-
Q 013204 203 ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL-----GT----MFGCDKYSIKPDLVSFA- 272 (447)
Q Consensus 203 ~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~-----g~----~~~~~~~~~~~d~v~~s- 272 (447)
+++++|+++..++.+|.+.+ +++|+++|++||+++|+||+|+++.+. |. .+.....+ .|+++++
T Consensus 205 ~~~~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g--~d~~~~s~ 278 (497)
T 3mc6_A 205 KNTVLLVGSAPNFPHGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPG--VTSISCDT 278 (497)
T ss_dssp SSEEEEEEETTCTTTCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTT--CCEEEEET
T ss_pred hCCEEEEEECCCCCCCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCC--CcEEEECc
Confidence 35788888888888887766 889999999999999999999865332 11 12222333 4777654
Q ss_pred -ccCCCcccceeEEEeChhHHHHhhhcc--CCCCccCcCCCC--CCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHH
Q 013204 273 -KALSSAYMPIGAILVSPEVSEVIHSQS--NTLGSFSHGFTY--SGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKF 344 (447)
Q Consensus 273 -K~l~gg~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~t~--~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l 344 (447)
|.+.++ .++|+++++++.+....... ...+......++ +.....+++..++++.+.. ++..++..++.+++
T Consensus 279 ~K~l~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l 357 (497)
T 3mc6_A 279 HKYGFAP-KGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKF 357 (497)
T ss_dssp TTTTCCC-SSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCC-CCceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 877666 78999999877654432100 000000000011 1122234444455555443 34556777788888
Q ss_pred HHhHhh-ccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--CEEEEecCCCCCHHH
Q 013204 345 QDGVKA-FSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIMMSPPFIMSPEE 421 (447)
Q Consensus 345 ~~~L~~-l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g--~~iR~~~~~~~t~e~ 421 (447)
++.|++ +++..++. ...+.++.+..... ....+.+.|.++||.+.... ..+|++++ .+|+++
T Consensus 358 ~~~L~~~~~g~~~~~--~~~~~~v~~~~~~~------------~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~ 422 (497)
T 3mc6_A 358 KKYIQENIPDLDIMG--NPRYSVISFSSKTL------------NIHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHV 422 (497)
T ss_dssp HHHHHHSCTTCEECS--CCCSSEEEEECTTT------------THHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCT
T ss_pred HHHHHhcCCCEEEec--CCCeeEEEEeCCCC------------CHHHHHHHHHhCCEEEecCCCCCeEEEEEe-CCCHHH
Confidence 888887 44333221 23444444432211 14568899999999887653 45899988 789999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013204 422 VDELISKYGKALKATEE 438 (447)
Q Consensus 422 i~~~~~~l~~~l~~~~~ 438 (447)
+++++++|+++++++++
T Consensus 423 i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 423 VDEICDILRTTVQELKS 439 (497)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988753
No 163
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.88 E-value=6.2e-21 Score=182.93 Aligned_cols=331 Identities=14% Similarity=0.078 Sum_probs=201.3
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQV 112 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al 112 (447)
.+++||+++.. + . .+|++++++.+.... ... ..+.+...++++++++++ +.+.+++++||++|+..++
T Consensus 3 ~~~i~~~~~~~--~-~-p~~~~~~a~~~~~~~-~~~----y~~~~~~~~l~~~la~~~---g~~~~~~~~~gt~a~~~~~ 70 (347)
T 1jg8_A 3 HMMIDLRSDTV--T-K-PTEEMRKAMAQAEVG-DDV----YGEDPTINELERLAAETF---GKEAALFVPSGTMGNQVSI 70 (347)
T ss_dssp --CEECSCGGG--C-C-CCHHHHHHHHTCCCC-CGG----GTCCHHHHHHHHHHHHHH---TCSEEEEESCHHHHHHHHH
T ss_pred ceEEEeccccC--C-C-CCHHHHHHHhcCCCC-Ccc----cCCChHHHHHHHHHHHHh---CCceEEEecCcHHHHHHHH
Confidence 46789987753 2 2 568888887654321 111 224566778999999987 3457899999999999998
Q ss_pred HHHHHHHHhcCCCCcceEEEEcCCCccchh-h-hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHH
Q 013204 113 KLVWYYNNALGRPNKKKFIARQKSYHGSTL-I-AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190 (447)
Q Consensus 113 ~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (447)
+.+. ..+++|++.+++|..... . .....|.... .+ .+..+. .++
T Consensus 71 ~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~------------~v-~~~~~~-------------~d~ 116 (347)
T 1jg8_A 71 MAHT--------QRGDEVILEADSHIFWYEVGAMAVLSGVMPH------------PV-PGKNGA-------------MDP 116 (347)
T ss_dssp HHHC--------CTTCEEEEETTCHHHHSSTTHHHHHTCCEEE------------EE-CEETTE-------------ECH
T ss_pred HHhc--------CCCCEEEEcCcchhhhccccchhhccCeEEE------------Ee-cCCCCc-------------cCH
Confidence 7653 234788888877644221 1 1111221110 01 000000 013
Q ss_pred HHHHHHHHhhC--CCcEEEEEEccccCCC-CCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCc---cccccccccCCC
Q 013204 191 NNLEDLILKEG--PETIAAFIAEPVIGAG-GVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR---LGTMFGCDKYSI 264 (447)
Q Consensus 191 ~~le~~l~~~~--~~~~a~vi~epv~~~~-G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~---~g~~~~~~~~~~ 264 (447)
+++++.+.... .+++++|+++++++.+ | ...+.+.+++|.++|++||+++|+||+|. ++. .+.. ......
T Consensus 117 ~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G-~~~~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~~--~~~~~~ 192 (347)
T 1jg8_A 117 DDVRKAIRPRNIHFPRTSLIAIENTHNRSGG-RVVPLENIKEICTIAKEHGINVHIDGARI-FNASIASGVP--VKEYAG 192 (347)
T ss_dssp HHHHHHSCCSCTTSCCEEEEEEESSBTTTTS-BCCCHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCCC--HHHHHH
T ss_pred HHHHHHhccccccccCceEEEEeccccccCC-ccCcHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCCC--hHHhcc
Confidence 77777664210 1257788888877666 6 55677889999999999999999999874 211 1111 111111
Q ss_pred CCCe--eeecccCCCccccee-EEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 013204 265 KPDL--VSFAKALSSAYMPIG-AILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIA 341 (447)
Q Consensus 265 ~~d~--v~~sK~l~gg~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~ 341 (447)
..|. +++||.+++ |+| ++++++++++.+.... . ..+.+...+.+.++++.++++... +. .++..++.
T Consensus 193 ~~d~~~~s~sK~l~~---~~G~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~ 262 (347)
T 1jg8_A 193 YADSVMFCLSKGLCA---PVGSVVVGDRDFIERARKAR----K-MLGGGMRQAGVLAAAGIIALTKMV-DR-LKEDHENA 262 (347)
T ss_dssp TCSEEEEESSSTTCC---SSCEEEEECHHHHHHHHHHH----H-HHTCCCSSTHHHHHHHHHHHHHSS-TT-HHHHHHHH
T ss_pred cccEEEEecccccCC---CceEEEEcCHHHHHHHHHHH----H-HcCCchhHHHHHHHHHHHHHHHHH-HH-HHHHHHHH
Confidence 2343 358999975 356 5667888877654211 0 112233345566666666666421 22 33344566
Q ss_pred HHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEEecCCCCCHH
Q 013204 342 PKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMMSPPFIMSPE 420 (447)
Q Consensus 342 ~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~~~~~~~t~e 420 (447)
+++++.|+++ +..+. .....+.++.+.+..... ....+.+.|+++||.+.+.+ +.+|++++..++++
T Consensus 263 ~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e 330 (347)
T 1jg8_A 263 RFLALKLKEI-GYSVN-PEDVKTNMVILRTDNLKV----------NAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRN 330 (347)
T ss_dssp HHHHHHHHHH-TCBCC-GGGCCSSEEEEECTTSSS----------CHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHH
T ss_pred HHHHHHHHhc-Cceec-cCCCcceEEEEEcccccC----------CHHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHH
Confidence 7788888776 32221 112345566666642110 14568888999999998875 67999998889999
Q ss_pred HHHHHHHHHHHHHHH
Q 013204 421 EVDELISKYGKALKA 435 (447)
Q Consensus 421 ~i~~~~~~l~~~l~~ 435 (447)
++++++++|++++++
T Consensus 331 ~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 331 DIEEALNIFEKLFRK 345 (347)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
No 164
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.87 E-value=1e-21 Score=192.90 Aligned_cols=336 Identities=12% Similarity=0.067 Sum_probs=199.5
Q ss_pred CCEEEecCCccccccCC-CCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCC-----CCeEEE--eCC
Q 013204 32 GKKYLDSLAGLWCTALG-GSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASK-----MAKVFF--TNS 103 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~v~~--~~s 103 (447)
...++||+.+. +++ ..+|.+.+++.++.......+. +.....++.+.+++++.... .+++.+ +.+
T Consensus 40 ~~~~i~l~~g~---~~d~~~~~~v~~a~~~a~~~~~~~y~----~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~ 112 (409)
T 4eu1_A 40 AKRKVNLSIGV---YRDDADQPFVLECVKQATLGTNMDYA----PVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLG 112 (409)
T ss_dssp CSSCEECCCSS---CCCTTSCCCCCHHHHTCCCCSCCCCC----CTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESH
T ss_pred CcCceeeeeeE---EECCCCCEeecHHHHhcCccccccCC----CCCCcHHHHHHHHHHHcCCCchhhccCceeeeeccc
Confidence 34689998773 323 3678888888877332222211 22334566677776652222 456744 899
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChh
Q 013204 104 GSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 183 (447)
Q Consensus 104 GseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (447)
|++|++.+..+++.. . .+++.|++.+|+|++........+.... .++..+... .
T Consensus 113 g~ga~~~~~~~~~~~----~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~-------------~~~~~~~~~-----~--- 166 (409)
T 4eu1_A 113 GTGALRIGGDLLNRF----V-ANCNRIYGPDVGYPNHESIFAKAGMELT-------------PYSYYDPAT-----K--- 166 (409)
T ss_dssp HHHHHHHHHHHGGGT----S-SSCCEEEEESSCCTHHHHHHHHTTCEEE-------------EECCEETTT-----T---
T ss_pred chHHHHHHHHHHHHh----c-CCCCEEEEeCCCcHhHHHHHHHcCCeEE-------------EEEeecCcC-----C---
Confidence 999999887655322 1 2347899999999887654443222111 111100000 0
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEE-EccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc---cccc
Q 013204 184 EYSTRLANNLEDLILKEGPETIAAFI-AEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT---MFGC 259 (447)
Q Consensus 184 ~~~~~~~~~le~~l~~~~~~~~a~vi-~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~---~~~~ 259 (447)
..+++++++.+....+ ..++++ .+|.|++ | ..++.+.+++|.++|++||+++|+||+|.+++..+. ....
T Consensus 167 ---~~d~~~l~~~l~~~~~-~~~~i~~~~p~NPt-G-~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~ 240 (409)
T 4eu1_A 167 ---GLNLAGMLECLDKAPE-GSVILVHACAHNPT-G-VDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVP 240 (409)
T ss_dssp ---EECHHHHHHHHHHSCT-TCEEEEESSSCTTT-C-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHH
T ss_pred ---cCcHHHHHHHHHhCCC-CcEEEEECCCCCCC-C-CCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHH
Confidence 0014778888765332 344555 4555554 4 456788899999999999999999999998876541 1221
Q ss_pred -ccCCCCCCee---eecccCCCcccceeEE---EeChh----HHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH
Q 013204 260 -DKYSIKPDLV---SFAKALSSAYMPIGAI---LVSPE----VSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY 328 (447)
Q Consensus 260 -~~~~~~~d~v---~~sK~l~gg~~~~g~~---~~~~~----~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~ 328 (447)
...+..++++ ++||.++..++++|++ +++++ +++.+.. .....+++.+++++.++.++|+..
T Consensus 241 ~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~ 313 (409)
T 4eu1_A 241 RHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLAL-------LIRPMYNNPPLYGAWVVSSILKDP 313 (409)
T ss_dssp HHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHH-------HHHHHHSSCCHHHHHHHHHHHHCH
T ss_pred HHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHH-------HHhhhcCCCChHHHHHHHHHhCCH
Confidence 1223445544 6899998544899996 56677 5554432 111234455677877777777621
Q ss_pred --------hhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEE-EeecCCCCCCCCCCCcchHHHHHHHHH-Hc
Q 013204 329 --------KERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGT-EFADNKSPNEPFPPEWGIGAYFGAQCE-KH 398 (447)
Q Consensus 329 --------~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~ 398 (447)
..++..++++++.+++.+.|+++.....+......+.++.+ .+. . .+...++ ++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~ll~~~ 377 (409)
T 4eu1_A 314 QLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIERQVGMMAYTGLT---------------R-EQVELLRSEY 377 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHSCSSEEECCCC---------------H-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCceEEEEeCCC---------------H-HHHHHHHHcC
Confidence 12345667777888888888775110001112233333222 111 1 2345555 67
Q ss_pred CceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 399 GMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 399 Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
||++.+++ |++.. ..++++|++++++|++++
T Consensus 378 gv~v~p~~---Ri~~~-~~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 378 HIYMTLNG---RAAVS-GLNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp CEECCTTC---EEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred CEEEcCCC---EEEEE-ecCHhhHHHHHHHHHHHh
Confidence 99998753 77754 467788999999998875
No 165
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.87 E-value=1.4e-20 Score=183.46 Aligned_cols=279 Identities=13% Similarity=0.109 Sum_probs=183.3
Q ss_pred CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh---cccCC
Q 013204 74 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA---SLSGL 150 (447)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~---~~~~~ 150 (447)
...+...++++++++++ +.+++++++||++|++.+++.+. .++++|++.++.||+...... ...+.
T Consensus 63 ~~~~~~~~l~~~la~~~---g~~~~~~~~sGt~A~~~al~~~~--------~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~ 131 (392)
T 3qhx_A 63 TGNPTRTALEAALAAVE---DAAFGRAFSSGMAAADCALRAML--------RPGDHVVIPDDAYGGTFRLIDKVFTGWNV 131 (392)
T ss_dssp TCCHHHHHHHHHHHHHT---TCSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHTGGGGTC
T ss_pred CCChHHHHHHHHHHHHh---CCCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEeCCCcchHHHHHHHHHHhcCc
Confidence 35677888999999986 34589999999999999999763 345789999999988643321 11111
Q ss_pred ccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHH
Q 013204 151 PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKV 230 (447)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l 230 (447)
. +..++.. +++++++.+. +++++|++|++++.+|.+.+ +++|
T Consensus 132 ~------------~~~v~~~------------------d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i 173 (392)
T 3qhx_A 132 E------------YTPVALA------------------DLDAVRAAIR----PTTRLIWVETPTNPLLSIAD----IAGI 173 (392)
T ss_dssp E------------EEEECTT------------------CHHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHH
T ss_pred E------------EEEeCCC------------------CHHHHHHhhC----CCCeEEEEECCCCCCcEEec----HHHH
Confidence 1 1122221 1367777664 46888999999888888876 9999
Q ss_pred HHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcc-cceeEEEeC-hhHHHHhhhccCCCCccC
Q 013204 231 QAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAY-MPIGAILVS-PEVSEVIHSQSNTLGSFS 306 (447)
Q Consensus 231 ~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~ 306 (447)
+++|++||+++|+||+|+.+ .. ....+..+|+++ ++|.+++++ .++|+++.+ +++++.+... .
T Consensus 174 ~~la~~~g~~li~D~~~~~~-~~-----~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~-------~ 240 (392)
T 3qhx_A 174 AQLGADSSAKVLVDNTFASP-AL-----QQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFL-------Q 240 (392)
T ss_dssp HHHHHHHTCEEEEECTTTCT-TT-----CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHH-------H
T ss_pred HHHHHHcCCEEEEECCCccc-cc-----CChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHH-------H
Confidence 99999999999999999732 21 222344578887 789998754 578999987 5777776532 2
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeE------------------eeeeeEEE
Q 013204 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI------------------RGTGLILG 368 (447)
Q Consensus 307 ~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------~~~g~~~~ 368 (447)
+..++..+++.+++++..++.+. ...++..++.+++.+.|++. +.+..+ ++.|.++.
T Consensus 241 ~~~g~~~~~~~~~~~~~~l~~l~--~~~~~~~~~~~~l~~~L~~~---~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~ 315 (392)
T 3qhx_A 241 NGAGAVPGPFDAYLTMRGLKTLV--LRMQRHSENAAAVAEFLAEH---PAISTVLYPGLPSHPGHAVAARQMRGFGGMVS 315 (392)
T ss_dssp HHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTC---TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEE
T ss_pred HhcCCCCCHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHhcC---CCcceEECCCCCCCCCHHHHHHhCCCCceEEE
Confidence 22355677888887777766432 22455566666666666654 222222 45688889
Q ss_pred EEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------------------------CCEEEEecCCCCCHHHHH
Q 013204 369 TEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------------------------GDNIMMSPPFIMSPEEVD 423 (447)
Q Consensus 369 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------------------------g~~iR~~~~~~~t~e~i~ 423 (447)
+.+.... .....+...|...|+.++.+ .+.||++.....+++.|+
T Consensus 316 ~~l~~~~----------~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~ 385 (392)
T 3qhx_A 316 VRMRAGR----------TAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLD 385 (392)
T ss_dssp EEETTCH----------HHHHHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHH
T ss_pred EEeCCcH----------HHHHHHHHhCCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHH
Confidence 9886421 02344555554444443321 245899976666666666
Q ss_pred HHHHHH
Q 013204 424 ELISKY 429 (447)
Q Consensus 424 ~~~~~l 429 (447)
.+.++|
T Consensus 386 ~l~~al 391 (392)
T 3qhx_A 386 DLKQAL 391 (392)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 655554
No 166
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.87 E-value=1.9e-19 Score=177.61 Aligned_cols=325 Identities=9% Similarity=0.065 Sum_probs=201.7
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCcccccCcCC-ChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcC
Q 013204 45 TALGGSEPRLVAAATAQLNTLPFYHSFWNRT-TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 123 (447)
Q Consensus 45 ~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~ 123 (447)
..++ .+|++.+++.+.+.... + .. .....++++.+++++ +.+++++++||++|++.+++.+.
T Consensus 26 p~~~-~p~~~~~a~~~~~~~~~-y-----~~~~~~~~~l~~~la~~~---~~~~v~~~~ggt~al~~~l~~l~------- 88 (424)
T 2po3_A 26 PNRI-DRARLYERLDRALDSQW-L-----SNGGPLVREFEERVAGLA---GVRHAVATCNATAGLQLLAHAAG------- 88 (424)
T ss_dssp CCCC-CHHHHHHHHHHHHHHTC-C-----SSSCHHHHHHHHHHHHHH---TSSEEEEESCHHHHHHHHHHHHT-------
T ss_pred CCCC-ChHHHHHHHHHHHhcCC-c-----ccCCHHHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHcC-------
Confidence 3455 36799999988886532 1 12 467889999999997 34689999999999999999762
Q ss_pred CCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhHHHHHHHHHHHHHHHhhCC
Q 013204 124 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEEYSTRLANNLEDLILKEGP 202 (447)
Q Consensus 124 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~ 202 (447)
+ +++|++.+++|++....... .|... ..++... .+. .++++|++.+.
T Consensus 89 -~-gd~Vlv~~~~~~~~~~~~~~-~G~~~------------~~v~~~~~~~~-------------~d~~~l~~~i~---- 136 (424)
T 2po3_A 89 -L-TGEVIMPSMTFAATPHALRW-IGLTP------------VFADIDPDTGN-------------LDPDQVAAAVT---- 136 (424)
T ss_dssp -C-CSEEEEESSSCTHHHHHHHH-TTCEE------------EEECBCTTTSS-------------BCHHHHGGGCC----
T ss_pred -C-CCEEEECCCccHHHHHHHHH-cCCEE------------EEEecCCCcCC-------------cCHHHHHHhhC----
Confidence 2 37899999999988654333 22211 1111110 000 01356665553
Q ss_pred CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCeeeec----ccCCC
Q 013204 203 ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDLVSFA----KALSS 277 (447)
Q Consensus 203 ~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~v~~s----K~l~g 277 (447)
+++++|++.+ ..|...+ +++|.++|++||+++|+||+|+ |+...|.. .+..+|++++| |.+++
T Consensus 137 ~~~~~v~~~~---~tG~~~~----l~~i~~la~~~~~~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~sk~K~l~~ 204 (424)
T 2po3_A 137 PRTSAVVGVH---LWGRPCA----ADQLRKVADEHGLRLYFDAAHALGCAVDGRP-----AGSLGDAEVFSFHATKAVNA 204 (424)
T ss_dssp TTEEEEEEEC---GGGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCC
T ss_pred cCCcEEEEEC---CCCCcCC----HHHHHHHHHHcCCEEEEECccccCCeECCee-----cccccCEEEEeCCCCCCccC
Confidence 2466666643 3444433 9999999999999999999998 66544422 12225777655 88876
Q ss_pred cccceeEEEeC-hhHHHHhhhccCCCC--cc---CcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc
Q 013204 278 AYMPIGAILVS-PEVSEVIHSQSNTLG--SF---SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 278 g~~~~g~~~~~-~~~~~~~~~~~~~~~--~~---~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l 351 (447)
.++|+++++ +++++.+........ .+ ..+.++..+++.+++++..++.+ ++..++.+++.+++++.|+++
T Consensus 205 --~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~--~~~~~~~~~~~~~l~~~L~~~ 280 (424)
T 2po3_A 205 --FEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAF--PEVIDRNRRNHAAYREHLADL 280 (424)
T ss_dssp --SSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTCSC
T ss_pred --CCCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC
Confidence 589999998 788777653211000 00 01122234566666666555433 235566666777777777654
Q ss_pred cCCCceeeEee-ee--eEEEEEeecC--CCCCCCCCCCcchHHHHHHHHHHcCceEEee-C-------------------
Q 013204 352 SDSPIIGEIRG-TG--LILGTEFADN--KSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-G------------------- 406 (447)
Q Consensus 352 ~~~~~~~~~~~-~g--~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-g------------------- 406 (447)
.+..+.....+ .. .++.+.+.+. .. ....+.+.|.++||.+.+. .
T Consensus 281 ~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~ 350 (424)
T 2po3_A 281 PGVLVADHDRHGLNNHQYVIVEIDEATTGI----------HRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPH 350 (424)
T ss_dssp TTEEECCGGGGSCCCCCCEEEEECHHHHSS----------CHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHH
T ss_pred CCccccCCCCCCccccEEEEEEECCccchh----------hHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChh
Confidence 22111110111 11 3344555421 00 1456788899999998752 1
Q ss_pred ------CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013204 407 ------DNIMMSPPFIMSPEEVDELISKYGKALKATEERVKELK 444 (447)
Q Consensus 407 ------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~~~~ 444 (447)
..+|+.++..++++++++++++|++++++.++....++
T Consensus 351 ~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~~~~~~~~~ 394 (424)
T 2po3_A 351 TERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRGRELTARHR 394 (424)
T ss_dssp HHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhhHHHhhhhc
Confidence 01778777899999999999999999987765444444
No 167
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.86 E-value=3e-20 Score=183.10 Aligned_cols=330 Identities=15% Similarity=0.095 Sum_probs=185.2
Q ss_pred EEecCCccccccCCCCCHHHHHHHHHHHhc-CCcccc---cC--cCCChHHHHHH-HHHHHhcCcCCCCeE-EEeCChhh
Q 013204 35 YLDSLAGLWCTALGGSEPRLVAAATAQLNT-LPFYHS---FW--NRTTKPSLDLA-KELLEMFTASKMAKV-FFTNSGSE 106 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~~~~---~~--~~~~~~~~~l~-~~l~~~~~~~~~~~v-~~~~sGse 106 (447)
.+++.++. + +.||++++++.+++.+ ....+. .. ....+...+++ +.+++.+ +.+.+ ++++||++
T Consensus 34 ~i~l~~~~--~---~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~v~~~~Gs~ 105 (425)
T 3ecd_A 34 QVELIASE--N---IVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLF---NAGHANVQPHSGAQ 105 (425)
T ss_dssp SEECCTTC--C---CCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHH---TCSEEECCCSSHHH
T ss_pred ceeeeccc--C---CCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHh---CCCCceeecCchHH
Confidence 46665542 2 3489999999998843 211111 00 11123455666 5566665 33445 45899999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccch-hhhhc-ccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChh
Q 013204 107 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGST-LIAAS-LSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEE 183 (447)
Q Consensus 107 A~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 183 (447)
|++.+++.+. .+++.|++.+++|++.. .+... ..+... . ...++... .+.
T Consensus 106 a~~~al~~~~--------~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~-~---------~~~~~~~~~~~~--------- 158 (425)
T 3ecd_A 106 ANGAVMLALA--------KPGDTVLGMSLDAGGHLTHGAKPALSGKWF-N---------ALQYGVSRDTML--------- 158 (425)
T ss_dssp HHHHHHHHHC--------CTTCEEEEECC------------------C-E---------EEEECCCTTTSS---------
T ss_pred HHHHHHHHcc--------CCCCEEEEcccccccceecchhhhhcccce-e---------eeecCCCcccCc---------
Confidence 9999999763 34578999999998832 22211 111100 0 00111110 000
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEEc-cccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCcccccccccc
Q 013204 184 EYSTRLANNLEDLILKEGPETIAAFIAE-PVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDK 261 (447)
Q Consensus 184 ~~~~~~~~~le~~l~~~~~~~~a~vi~e-pv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~ 261 (447)
.++++|++.+... ++++|+++ |.++ .. ..+++|.++|++||+++|+||+|. |+...+.....
T Consensus 159 ----~d~~~l~~~i~~~---~~~~v~~~~~~~~---~~----~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~-- 222 (425)
T 3ecd_A 159 ----IDYDQVEALAQQH---KPSLIIAGFSAYP---RK----LDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP-- 222 (425)
T ss_dssp ----CCHHHHHHHHHHH---CCSEEEEECSCCC---SC----CCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG--
T ss_pred ----cCHHHHHHHHhhc---CCcEEEEccccCC---Cc----CCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCc--
Confidence 0147788887642 24566666 4543 23 338999999999999999999964 44333322211
Q ss_pred CCCCCCeee--ecccCCCcccceeEEEeC-hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHh-h--hcHHH
Q 013204 262 YSIKPDLVS--FAKALSSAYMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYK-E--RNIVE 335 (447)
Q Consensus 262 ~~~~~d~v~--~sK~l~gg~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-~--~~~~~ 335 (447)
.. .+|+++ +||+++| +++|+++++ +++.+.+... ...+.+.+.++..++++.+++.... . +++.+
T Consensus 223 ~~-~~di~~~s~sK~l~g--~~~g~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~ 293 (425)
T 3ecd_A 223 VE-HAHVVTSTTHKTLRG--PRGGFVLTNDEEIAKKINSA------VFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYID 293 (425)
T ss_dssp GG-TCSEEEEESSGGGCC--CSCEEEEESCHHHHHHHHHH------HC-----CCCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred hh-cCcEEEecCCcccCC--CCcEEEEeCCHHHHHHHHhh------hCccccCCccHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 11 157764 5699965 578999988 5676666531 1111222334434444444443322 2 35667
Q ss_pred HHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE----ee------
Q 013204 336 QVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR----VS------ 405 (447)
Q Consensus 336 ~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~------ 405 (447)
+++++.+++++.|+++ +..+... .+.+.++.+.+..... ....+.+.|.++||++. ++
T Consensus 294 ~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~v~~~~~p~~~~~~~ 361 (425)
T 3ecd_A 294 RVLANAQALGDVLKAG-GVDLVTG-GTDNHLLLVDLRPKGL----------KGAQVEQALERAGITCNKNGIPFDPEKPT 361 (425)
T ss_dssp HHHHHHHHHHHHHHHT-TCEEGGG-SCSSSEEEEECGGGTC----------CHHHHHHHHHHTTEECEECCCTTCSSCTT
T ss_pred HHHHHHHHHHHHHHhC-CCeeccC-CCCceEEEEEeCCCCC----------CHHHHHHHHHHcCCEecccccCCCCCCCC
Confidence 8888888888888774 2211110 1245566666653221 14457788889999998 32
Q ss_pred -CCEEEEecCCCC----CHHHHHHHHHHHHHHHHHH
Q 013204 406 -GDNIMMSPPFIM----SPEEVDELISKYGKALKAT 436 (447)
Q Consensus 406 -g~~iR~~~~~~~----t~e~i~~~~~~l~~~l~~~ 436 (447)
.+.+|++++... ++++|++++++|++++++.
T Consensus 362 ~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 362 ITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp TCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 146999966544 5999999999999998775
No 168
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.86 E-value=2.8e-20 Score=187.27 Aligned_cols=357 Identities=14% Similarity=0.125 Sum_probs=203.0
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHH----HHHHHHHhcCcCCCCeEEEeCChhh
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLD----LAKELLEMFTASKMAKVFFTNSGSE 106 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~----l~~~l~~~~~~~~~~~v~~~~sGse 106 (447)
.+..|+|+..+ ++.+|.+++++....-+... +. ....+...+ +.+++++++.....+.++|++||++
T Consensus 99 ~~~~yl~~~~~------~~~~~~v~~~~~~~~~n~~~-~~--~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~ 169 (497)
T 2qma_A 99 QHPDCIAHLHT------PPLMPAVAAEAMIAALNQSM-DS--WDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQ 169 (497)
T ss_dssp TSTTBCSSSCC------CCBHHHHHHHHHHHHHCCCT-TC--GGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHH
T ss_pred CCCCeeEeCCC------CCcHHHHHHHHHHHhhcccc-cc--hhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchH
Confidence 45567776544 34678888888766543211 11 112233333 4455777764223378999999999
Q ss_pred HHHHHHHHHHHHHH---------hcCCCC--cceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccC
Q 013204 107 ANDTQVKLVWYYNN---------ALGRPN--KKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRY 175 (447)
Q Consensus 107 A~~~Al~~~~~~~~---------~~~~~~--~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
||..|++.++.+.. ..|.+. ++..++.+...|.+...+....+... ..+..++....++.
T Consensus 170 a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~---------~~v~~v~~~~~~~~ 240 (497)
T 2qma_A 170 SNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGE---------KAVMTVDANADGTM 240 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCG---------GGEEEECBCTTSSB
T ss_pred HHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCc---------ccEEEEecCCCCcC
Confidence 99999998764321 122221 23244445556665444433222100 01122222211110
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhC-C-CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 176 AHPGETEEEYSTRLANNLEDLILKEG-P-ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 176 ~~~~~~~~~~~~~~~~~le~~l~~~~-~-~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
+ +++|++.+.... . ..+.+|+++..++..|.+.+ +++|.++|++||+++|+|++|+++...
T Consensus 241 -----d--------~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~ 303 (497)
T 2qma_A 241 -----D--------ITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALIL 303 (497)
T ss_dssp -----C--------GGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGG
T ss_pred -----C--------HHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHh
Confidence 1 266777765421 1 12446666666666677666 999999999999999999999977544
Q ss_pred ccccccccCCC-CCCeeee--cccCCCcccceeEEEeChh-HHHHhhhccCCCCccC-cCCCCCCcHHH----------H
Q 013204 254 GTMFGCDKYSI-KPDLVSF--AKALSSAYMPIGAILVSPE-VSEVIHSQSNTLGSFS-HGFTYSGHPVS----------C 318 (447)
Q Consensus 254 g~~~~~~~~~~-~~d~v~~--sK~l~gg~~~~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~t~~~~~~~----------~ 318 (447)
.. +.....++ .+|++++ +|.++++ +++|+++.+++ .++.+.... .+. ...+..+++.. .
T Consensus 304 ~~-~~~~~~gi~~~D~i~~s~hK~l~~p-~~~G~l~~~~~~~~~~~~~~~----~yl~~~~~~~~~~~~~~~~~~r~~~a 377 (497)
T 2qma_A 304 SS-HKSRLKGVERAHSISVDFHKLFYQT-ISCGALLVNDKSNFKFLLHHA----DYLNREHDELPNLVDKSIATTKRFDA 377 (497)
T ss_dssp ST-TGGGGTTGGGCSEEEEETTTTTCCC-SSCEEEEESCGGGGGGGCC------------------------CCSCCCTH
T ss_pred Cc-chHhhcCcccCCEEEEcchhccCCC-cceEEEEEeCHHHHHHhcCCc----hhcCCccccCCCccccCCCCCCchhH
Confidence 33 33334456 6898876 7999888 69999998754 344442110 111 01111112211 1
Q ss_pred HHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHH
Q 013204 319 AVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC 395 (447)
Q Consensus 319 ~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (447)
.+.+++++.+.. ++..++..++++++.+.|+++.+..++. ...+.++.+.+..... ....+...+.+.|
T Consensus 378 l~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~--~~~~~~v~f~~~~~~~------~~~~l~~~l~~~l 449 (497)
T 2qma_A 378 LKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLA--EPSLSTVLFRATHETA------DLDELNKALRLEA 449 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECS--CCSSSEEEEEECCSSS------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEc--CCCceEEEEEEcCCcc------CHHHHHHHHHHHH
Confidence 122334444333 2455677778888888887753322211 2334566666543210 0001234577888
Q ss_pred HHcCceEEee----C-CEEEEec-CCCCCHHHHHHHHHHHHHHHHHH
Q 013204 396 EKHGMLVRVS----G-DNIMMSP-PFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 396 ~~~Gi~~~~~----g-~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.++|+++.+. + ..+|+++ +..+|+++|++++++|+++++++
T Consensus 450 ~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 450 LTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp HHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 8999887642 2 4699997 78999999999999999987653
No 169
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.86 E-value=1.2e-20 Score=182.74 Aligned_cols=319 Identities=17% Similarity=0.129 Sum_probs=195.1
Q ss_pred CCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 013204 49 GSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128 (447)
Q Consensus 49 ~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~ 128 (447)
.-+|++++++.+++...... +.+...++++.+++++. .+++++++||++|++.+++.++.+ ..+++
T Consensus 10 ~~~~~v~~a~~~~~~~~~~~------~~~~~~~l~~~la~~~~---~~~v~~~~ggt~al~~~~~~~~~~-----~~~gd 75 (375)
T 2fnu_A 10 CLDKEDKKAVLEVLNSKQLT------QGKRSLLFEEALCEFLG---VKHALVFNSATSALLTLYRNFSEF-----SADRN 75 (375)
T ss_dssp CCCHHHHHHHHHHHTSSCCS------SSHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHSSCC-----CTTSC
T ss_pred CCCHHHHHHHHHHHHcCccc------CChHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHhccc-----CCCCC
Confidence 36899999999998763221 35667889999999973 348999999999999999976200 13347
Q ss_pred eEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEE
Q 013204 129 KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAF 208 (447)
Q Consensus 129 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~v 208 (447)
+|++.+++||+....... .|... ..++...... . ++++|++.+. + ++++|
T Consensus 76 ~Vl~~~~~~~~~~~~~~~-~g~~~------------~~~~~~~~~~-----~--------d~~~l~~~i~---~-~~~~v 125 (375)
T 2fnu_A 76 EIITTPISFVATANMLLE-SGYTP------------VFAGIKNDGN-----I--------DELALEKLIN---E-RTKAI 125 (375)
T ss_dssp EEEECSSSCTHHHHHHHH-TTCEE------------EECCBCTTSS-----B--------CGGGSGGGCC---T-TEEEE
T ss_pred EEEECCCccHhHHHHHHH-CCCEE------------EEeccCCCCC-----C--------CHHHHHhhcC---c-CceEE
Confidence 899999999987655443 22211 1111110000 0 0255555443 2 45555
Q ss_pred EEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eec--ccCCCcccceeE
Q 013204 209 IAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFA--KALSSAYMPIGA 284 (447)
Q Consensus 209 i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~s--K~l~gg~~~~g~ 284 (447)
++.+. +|.+.+ +++|.++|++||+++|+||+|+ +|..... ...+..+|++ ++| |.++. ++|+
T Consensus 126 ~~~~~---tG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~~~---~~~~~~~~i~~~s~s~~K~~~~---g~g~ 191 (375)
T 2fnu_A 126 VSVDY---AGKSVE----VESVQKLCKKHSLSFLSDSSHA-LGSEYQN---KKVGGFALASVFSFHAIKPITT---AEGG 191 (375)
T ss_dssp EEECG---GGCCCC----HHHHHHHHHHHTCEEEEECTTC-TTCEETT---EETTSSSSEEEEECCTTSSSCC---SSCE
T ss_pred EEeCC---cCCccC----HHHHHHHHHHcCCEEEEECccc-cCCeECC---eeccccCCeEEEeCCCCCCccc---cCce
Confidence 54443 566655 8999999999999999999997 3332211 1122223554 677 98854 3677
Q ss_pred EEe-C-hhHHHHhhhccCCCC------c---cCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC
Q 013204 285 ILV-S-PEVSEVIHSQSNTLG------S---FSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD 353 (447)
Q Consensus 285 ~~~-~-~~~~~~~~~~~~~~~------~---~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~ 353 (447)
++. + +++++.+........ . ...+.++..+++.+++++..++.+ ++..++.+++.+++.+.|+++++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~ 269 (375)
T 2fnu_A 192 AVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDNPY 269 (375)
T ss_dssp EEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTCSS
T ss_pred EEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC
Confidence 776 3 667766653211000 0 001222355666666555544332 34567777888888888877532
Q ss_pred CCceee---EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------------------------
Q 013204 354 SPIIGE---IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------------------------- 405 (447)
Q Consensus 354 ~~~~~~---~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------------------------- 405 (447)
..+... ..+.+.++.+.+..... .....+.+.|.++||.+...
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 340 (375)
T 2fnu_A 270 FTPLHPLLKDKSSNHLYPILMHQKFF---------TCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDF 340 (375)
T ss_dssp EEESGGGCSSCCCCSCEEEEECGGGG---------GGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHH
T ss_pred ccccCCCCCCCcceEEEEEEeCcccc---------chHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHH
Confidence 111110 01122333455543100 01456888899999988721
Q ss_pred -CCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 406 -GDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 406 -g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+.+|++++..+|++++++++++|+++++++
T Consensus 341 ~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 341 YHAEISLPCHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp HHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1469999998899999999999999988764
No 170
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.86 E-value=7.1e-21 Score=183.29 Aligned_cols=334 Identities=13% Similarity=0.067 Sum_probs=194.9
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCc-ccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHH
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF-YHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 111 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~A 111 (447)
|+++|..++.....+| .||.+.+++.+.++.... ......++.+...++++++++++. .+..++++||++|+..+
T Consensus 3 ~~~~~~~~~~~~l~~~-~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~---~~~~i~~~~G~~a~~~a 78 (357)
T 3lws_A 3 NRLRTSFQQTTGQISG-HGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLG---MDDAVFFPSGTMAQQVA 78 (357)
T ss_dssp CHHHHHHHTCSEESSB-SSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHT---CSEEEEESCHHHHHHHH
T ss_pred chhhhHHHhhcccccC-CCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhC---CCcEEEecCcHHHHHHH
Confidence 3455522333333444 578888888877765221 111112234567889999999873 35667789999999999
Q ss_pred HHHHHHHHHhcCCCCcceEEEEcCCCccchhh---hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 112 VKLVWYYNNALGRPNKKKFIARQKSYHGSTLI---AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 112 l~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
++.+... +++.+|+.++.||..... .....+... ..++..+ + ..
T Consensus 79 l~~~~~~-------gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~-~-----~~-------- 125 (357)
T 3lws_A 79 LRIWSDE-------TDNRTVAYHPLCHLEIHEQDGLKELHPIET------------ILVGAAD-R-----LM-------- 125 (357)
T ss_dssp HHHHHHH-------HTCCEEEECTTCHHHHSSTTHHHHHSSCEE------------EECSCTT-S-----CC--------
T ss_pred HHHHhhc-------CCCcEEEecccceeeeeccchhhhccCcEE------------EEecCCC-C-----Cc--------
Confidence 9977533 222266667777765322 111112111 1111100 0 00
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-----CCCccccccccccCC
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-----AFGRLGTMFGCDKYS 263 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-----g~g~~g~~~~~~~~~ 263 (447)
+++++++. ++ +++|++++.++.+|..+++.+++++|.++|++||++||+||+|. ..++....+.
T Consensus 126 d~~~l~~~-----~~-~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~----- 194 (357)
T 3lws_A 126 TLDEIKAL-----PD-IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA----- 194 (357)
T ss_dssp CHHHHHTC-----CS-CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-----
T ss_pred CHHHHhcC-----cC-cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-----
Confidence 13555554 22 56677777665542366788999999999999999999999875 1122211111
Q ss_pred CCCCee--eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 013204 264 IKPDLV--SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIA 341 (447)
Q Consensus 264 ~~~d~v--~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~ 341 (447)
...|++ ++||.++++ ..|++++++++++.+.... ....+..+..++.+ +++.++++... +. ..+..++.
T Consensus 195 ~~~d~~~~s~sK~~~~~--~gg~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~l~~~~-~~-~~~~~~~~ 265 (357)
T 3lws_A 195 GLFDSIYISFYKGLGGI--AGAILAGPAAFCQTARIWK----RRYGGDLISLYPYI-VSADYYYELRK-DR-MGQYYEQA 265 (357)
T ss_dssp TTSSEEEEESSSTTCCS--SCEEEEECHHHHHHHHHHH----HHTTCCCSCCHHHH-HHHHHHHHHHT-TC-HHHHHHHH
T ss_pred hcCCEEEEeccccCCCC--ceEEEEcCHHHHHHHHHHH----HHhcCCcccchHHH-HHHHHHHHHHH-HH-HHHHHHHH
Confidence 123544 789999664 2388999999888775321 11112233334443 44456666421 22 34456677
Q ss_pred HHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC------CEEEEecC-
Q 013204 342 PKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG------DNIMMSPP- 414 (447)
Q Consensus 342 ~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g------~~iR~~~~- 414 (447)
+++.+.|+++.+..+. ..+..+.++.+.+..... .....+.+.|.++||++.++. ..+|++..
T Consensus 266 ~~l~~~L~~~~g~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~ 335 (357)
T 3lws_A 266 KQLAEQFNALPGVHTT-PEVPVSNMFHLHFDGQAA---------DISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGD 335 (357)
T ss_dssp HHHHHHHHTSTTEEEE-SSSCSSSEEEEEEESCHH---------HHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCT
T ss_pred HHHHHHHHhCCCCeec-cCCCcceEEEEEecCChH---------HHHHHHHHHHHhcCeEEecccccCCCceEEEEEecc
Confidence 7888888765221110 123456677777754210 013457888999999988652 25888754
Q ss_pred --CCCCHHHHHHHHHHHHHHH
Q 013204 415 --FIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 415 --~~~t~e~i~~~~~~l~~~l 433 (447)
...+++++++++++|.+++
T Consensus 336 ~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 336 AYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp TGGGSCHHHHHHHHHHHHHHC
T ss_pred hhhhcCHHHHHHHHHHHHHhc
Confidence 3468999999999998765
No 171
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.86 E-value=1.1e-19 Score=177.23 Aligned_cols=314 Identities=12% Similarity=0.105 Sum_probs=201.6
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcce
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~ 129 (447)
-+|++.+++.+.+.+... .+.+...++++.+++++ +.+++++++||++|++.+++.+. . .++++
T Consensus 18 ~~~~~~~a~~~~~~~~~~------~~~~~~~~l~~~la~~~---~~~~~~~~~~gt~al~~~~~~~~------~-~~gd~ 81 (393)
T 1mdo_A 18 MGAEELAAVKTVLDSGWI------TTGPKNQELEAAFCRLT---GNQYAVAVSSATAGMHIALMALG------I-GEGDE 81 (393)
T ss_dssp CCHHHHHHHHHHHHHTCC------SSSHHHHHHHHHHHHHH---CCSEEEEESCHHHHHHHHHHHTT------C-CTTCE
T ss_pred CCHHHHHHHHHHHhcCCc------CCChHHHHHHHHHHHHh---CCCcEEEecChHHHHHHHHHHcC------C-CCCCE
Confidence 358999999998876422 14567888999999997 34589999999999999999761 0 33578
Q ss_pred EEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 013204 130 FIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFI 209 (447)
Q Consensus 130 vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi 209 (447)
|++.+++|++....... .|... ..++.... ... .+++++++.+. +++++|+
T Consensus 82 Vl~~~~~~~~~~~~~~~-~g~~~------------~~v~~~~~------~~~------~d~~~l~~~l~----~~~~~v~ 132 (393)
T 1mdo_A 82 VITPSMTWVSTLNMIVL-LGANP------------VMVDVDRD------TLM------VTPEHIEAAIT----PQTKAII 132 (393)
T ss_dssp EEEESSSCHHHHHHHHH-TTCEE------------EEECBCTT------TCC------BCHHHHHHHCC----TTEEEEC
T ss_pred EEeCCCccHhHHHHHHH-CCCEE------------EEEeccCC------cCC------CCHHHHHHhcC----CCceEEE
Confidence 99999999887543332 22211 11111100 000 01367777664 2567777
Q ss_pred EccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCeeeec----ccCCCcccceeE
Q 013204 210 AEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDLVSFA----KALSSAYMPIGA 284 (447)
Q Consensus 210 ~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~v~~s----K~l~gg~~~~g~ 284 (447)
+++. .|...+ +++|.++|++||+++|+||+|+ |+...+.. ++. +|++++| |.+++| ++|+
T Consensus 133 ~~~~---~G~~~~----~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~-----~~~-~d~~~~S~~k~K~l~~~--~~g~ 197 (393)
T 1mdo_A 133 PVHY---AGAPAD----LDAIYALGERYGIPVIEDAAHATGTSYKGRH-----IGA-RGTAIFSFHAIKNITCA--EGGI 197 (393)
T ss_dssp CBCG---GGCCCC----HHHHHHHHHHHTCCBCEECTTCTTCEETTEE-----TTS-SSEEEEECCTTSSSCSS--SCEE
T ss_pred EeCC---CCCcCC----HHHHHHHHHHcCCeEEEECccccCCeECCee-----cCC-CCeEEEeCCCCCccccc--cceE
Confidence 7653 344544 9999999999999999999998 33233321 222 7888766 888764 6889
Q ss_pred EEeC-hhHHHHhhhccCCCC--------------cc---CcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 013204 285 ILVS-PEVSEVIHSQSNTLG--------------SF---SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQD 346 (447)
Q Consensus 285 ~~~~-~~~~~~~~~~~~~~~--------------~~---~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~ 346 (447)
++.+ +++++.+........ .+ ..+..+..+++.++.+.+.++.+ ++..++.+++.+++++
T Consensus 198 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~l~~ 275 (393)
T 1mdo_A 198 VVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQ 275 (393)
T ss_dssp EEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 8886 788777653211000 00 01111334677777666666543 3456666777888888
Q ss_pred hHhhccCCCcee----eEeeeeeEEEEEeecC--CCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--------------
Q 013204 347 GVKAFSDSPIIG----EIRGTGLILGTEFADN--KSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------------- 406 (447)
Q Consensus 347 ~L~~l~~~~~~~----~~~~~g~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-------------- 406 (447)
.|+++. ..+.. ..++.+.++.+.+... .. ....+.+.|.++||.+.++.
T Consensus 276 ~L~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ 344 (393)
T 1mdo_A 276 AMADLP-FQPLSLPSWEHIHAWHLFIIRVDEARCGI----------TRDALMASLKTKGIGTGLHFRAAHTQKYYRERFP 344 (393)
T ss_dssp HHHTSS-CEECCCCSSCEECCCSCEEEECCHHHHSS----------CHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHST
T ss_pred HHhcCC-cccccCCCCCCCceeEEEEEEeccccccc----------CHHHHHHHHHhCCCCcccccCccccChhhhccCC
Confidence 887752 11110 1223334566666531 10 14568889999999887531
Q ss_pred ------------CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 407 ------------DNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 407 ------------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
..+|+++...+|++|+++++++|+++++..
T Consensus 345 ~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 345 TLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQG 386 (393)
T ss_dssp TCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred ccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 269999888899999999999999887653
No 172
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.86 E-value=4e-20 Score=183.58 Aligned_cols=329 Identities=14% Similarity=0.093 Sum_probs=191.1
Q ss_pred CCHHHHHHHHHHHhc-CCcccc---cCcCCC--hHHHHHH-HHHHHhcCcCCCCeEEE-eCChhhHHHHHHHHHHHHHHh
Q 013204 50 SEPRLVAAATAQLNT-LPFYHS---FWNRTT--KPSLDLA-KELLEMFTASKMAKVFF-TNSGSEANDTQVKLVWYYNNA 121 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~-~~~~~~---~~~~~~--~~~~~l~-~~l~~~~~~~~~~~v~~-~~sGseA~~~Al~~~~~~~~~ 121 (447)
.+|+|++++.+++.+ ....+. ...+.. +...+++ +++++.+ +.+.+.+ ++||++|++.+++.++
T Consensus 57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~---g~~~~~v~~~sGs~a~~~a~~~~~----- 128 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALF---GAEFANVQPHSGAQANAAVLHALM----- 128 (447)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH---TCSEEECCCSSHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHc---CCCceEEEeCCHHHHHHHHHHHhc-----
Confidence 489999999988853 322211 111111 1234566 7787776 3445666 8999999999999774
Q ss_pred cCCCCcceEEEEcCCCccch-hhh-hcccCCccccCCCCCCCCcceecCCC-CcccCCCCCCChhHHHHHHHHHHHHHHH
Q 013204 122 LGRPNKKKFIARQKSYHGST-LIA-ASLSGLPALHQKFDLPAPFVLHTDCP-HYWRYAHPGETEEEYSTRLANNLEDLIL 198 (447)
Q Consensus 122 ~~~~~~~~vi~~~~~yhg~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~le~~l~ 198 (447)
..+++|++.++.|+++. .+. ....+.. +. ....++. +.+ ..+++++++.+.
T Consensus 129 ---~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~-~~---------~~~~~~~~~~~-------------~~d~~~l~~~i~ 182 (447)
T 3h7f_A 129 ---SPGERLLGLDLANGGHLTHGMRLNFSGKL-YE---------NGFYGVDPATH-------------LIDMDAVRATAL 182 (447)
T ss_dssp ---CTTCEEEEECGGGTCCGGGTCTTSHHHHS-SE---------EEEECCCTTTC-------------SCCHHHHHHHHH
T ss_pred ---CCCCEEEecCcccccccchhhhhhhcCCe-eE---------EEEcCcCcccC-------------CcCHHHHHHHHH
Confidence 33578999999887732 111 1111100 00 0011110 000 011478888876
Q ss_pred hhCCCcEEEEEE-ccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhh-cCCCccccccccccCCCCCCee--eeccc
Q 013204 199 KEGPETIAAFIA-EPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVI-CAFGRLGTMFGCDKYSIKPDLV--SFAKA 274 (447)
Q Consensus 199 ~~~~~~~a~vi~-epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~-~g~g~~g~~~~~~~~~~~~d~v--~~sK~ 274 (447)
...+ ++|++ .|.+++++ ++++|+++|++||++||+||+| .|+...|.... ... ..|++ +++|+
T Consensus 183 ~~~~---~~i~~~~~~~~~~~-------~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~--~~~-~~di~~~s~sK~ 249 (447)
T 3h7f_A 183 EFRP---KVIIAGWSAYPRVL-------DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPS--PVP-HADVVSTTVHKT 249 (447)
T ss_dssp HHCC---SEEEEECSSCCSCC-------CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--STT-TCSEEEEESSGG
T ss_pred hcCC---eEEEEcCCCCCCcc-------CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCC--CCC-CCcEEEecCCcC
Confidence 4322 35555 56665543 3999999999999999999997 44433332111 111 24666 46899
Q ss_pred CCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCC-CcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhh
Q 013204 275 LSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS-GHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKA 350 (447)
Q Consensus 275 l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~-~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~ 350 (447)
++| ++.|++++++++++.+.... ..++++ ++...++++.+++..+.. ++..+++.++.+++.+.|++
T Consensus 250 l~G--~~gG~i~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 320 (447)
T 3h7f_A 250 LGG--GRSGLIVGKQQYAKAINSAV-------FPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMA 320 (447)
T ss_dssp GCC--CSCEEEEECGGGHHHHHHHH-------TTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCC--CCeEEEEECHHHHHHHhhhc-------CCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 975 68899999999888776421 111222 233334444445554322 34567778888888888765
Q ss_pred c----cCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE----ee-------CCEEEEecCC
Q 013204 351 F----SDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR----VS-------GDNIMMSPPF 415 (447)
Q Consensus 351 l----~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~-------g~~iR~~~~~ 415 (447)
+ .+...+.. ...+.++.+++..... ....+.+.|.++||++. +. .+.+|++++.
T Consensus 321 ~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~ 389 (447)
T 3h7f_A 321 PDVAKAGVSVVSG-GTDVHLVLVDLRDSPL----------DGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPA 389 (447)
T ss_dssp HHHHHTTCEEGGG-SCSSSEEEEECTTSSC----------CHHHHHHHHHHTTEECBC-------------CEEEEECHH
T ss_pred ccccCCCeEEecC-CCCCCEEEEEcCCCCC----------CHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHH
Confidence 4 12221110 1123445555543211 13445666777799877 32 2569999775
Q ss_pred C----CCHHHHHHHHHHHHHHHHH--------HHHHHHHhhh
Q 013204 416 I----MSPEEVDELISKYGKALKA--------TEERVKELKS 445 (447)
Q Consensus 416 ~----~t~e~i~~~~~~l~~~l~~--------~~~~~~~~~~ 445 (447)
. ++++++++++++|++++++ ++++...++.
T Consensus 390 ~~~~~~~~eei~~~~~~l~~~l~~~~~~~~~~~~~~v~~~~~ 431 (447)
T 3h7f_A 390 LATRGFGDTEFTEVADIIATALATGSSVDVSALKDRATRLAR 431 (447)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred HhhCCCCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 5 6899999999999999853 4555555443
No 173
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.86 E-value=4.6e-20 Score=178.71 Aligned_cols=309 Identities=14% Similarity=0.138 Sum_probs=191.7
Q ss_pred HHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEE
Q 013204 54 LVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAR 133 (447)
Q Consensus 54 v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~ 133 (447)
+.+++.+.+.... ..+.+...++++.+++++ +.+++++++||++|++.+++.+. -.++++|++.
T Consensus 21 ~~~~~~~~~~~~~------~~~~~~~~~l~~~la~~~---~~~~~~~~~~gt~a~~~~~~~~~-------~~~gd~v~~~ 84 (374)
T 3uwc_A 21 YLNDLREFIKTAD------FTLGAELEKFEKRFAALH---NAPHAIGVGTGTDALAMSFKMLN-------IGAGDEVITC 84 (374)
T ss_dssp HHHHHHHHHHHTC------CSSCHHHHHHHHHHHHHT---TCSEEEEESCHHHHHHHHHHHTT-------CCTTCEEEEE
T ss_pred HHHHHHHHHHcCC------cccChhHHHHHHHHHHHh---CCCcEEEeCCHHHHHHHHHHHcC-------CCCCCEEEEC
Confidence 6677776665532 125677889999999997 34489999999999999998761 1345789999
Q ss_pred cCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccc
Q 013204 134 QKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPV 213 (447)
Q Consensus 134 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv 213 (447)
.+.||+........ |... ..++..+.+. .+ ++++++.+. +++++|+ |.
T Consensus 85 ~~~~~~~~~~~~~~-g~~~------------~~~~~~~~~~-----~d--------~~~l~~~~~----~~~~~v~--~~ 132 (374)
T 3uwc_A 85 ANTFIASVGAIVQA-GATP------------VLVDSENGYV-----ID--------PEKIEAAIT----DKTKAIM--PV 132 (374)
T ss_dssp SSSCHHHHHHHHHT-TCEE------------EEECBCTTSS-----BC--------GGGTGGGCC----TTEEEEC--CB
T ss_pred CCccHHHHHHHHHc-CCEE------------EEEecCCCCC-----cC--------HHHHHHhCC----CCceEEE--Ee
Confidence 99999876544332 2211 1111111000 00 244555443 2566666 55
Q ss_pred cCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec----ccCCC-cccceeEEEeC
Q 013204 214 IGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA----KALSS-AYMPIGAILVS 288 (447)
Q Consensus 214 ~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s----K~l~g-g~~~~g~~~~~ 288 (447)
++ .|...+ +++|.++|++||+++|+||+|+.+.. +.....+..+|++++| |.+++ | . .|+++.+
T Consensus 133 n~-~G~~~~----~~~i~~~~~~~~~~li~D~~~~~g~~----~~~~~~~~~~d~~~~s~~~~K~l~~~g-~-~g~~~~~ 201 (374)
T 3uwc_A 133 HY-TGNIAD----MPALAKIAKKHNLHIVEDACQTILGR----INDKFVGSWGQFACFSLHPLKNLNVWS-D-AGVIITH 201 (374)
T ss_dssp CG-GGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCE----ETTEETTSSSSEEEEECSSSSSSCCSS-C-CEEEEES
T ss_pred CC-cCCcCC----HHHHHHHHHHcCCEEEEeCCCccCce----eCCeeccccccEEEEeCCCCCcCCccc-e-eEEEEeC
Confidence 54 455554 99999999999999999999983222 2223344447998877 99987 4 2 6777765
Q ss_pred h-hHHHHhhhccCCCC-----ccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-CCceeeEe
Q 013204 289 P-EVSEVIHSQSNTLG-----SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-SPIIGEIR 361 (447)
Q Consensus 289 ~-~~~~~~~~~~~~~~-----~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-~~~~~~~~ 361 (447)
+ ++.+.+........ ....+.++..+++.++.++..++.+ ++..++.+++.+++++.|+++.. ........
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 279 (374)
T 3uwc_A 202 SDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVPVRRE 279 (374)
T ss_dssp CHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCT
T ss_pred CHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEeccCCC
Confidence 4 56665543211000 0011223344566655554444322 34667778888888888877632 21111111
Q ss_pred -eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC----------------------------CEEEEe
Q 013204 362 -GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG----------------------------DNIMMS 412 (447)
Q Consensus 362 -~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g----------------------------~~iR~~ 412 (447)
+...+..+.+.... ...+.+.|.++||.+++.. +.+|++
T Consensus 280 ~~~~~~~~~~~~~~~------------~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~ 347 (374)
T 3uwc_A 280 GVYHVFHIYVLRVKY------------RDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLP 347 (374)
T ss_dssp TEECCCSSEEEEETT------------HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEEC
T ss_pred CCceeeEEEEEEcCC------------HHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEcc
Confidence 11111112222111 4568889999999887653 569999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHH
Q 013204 413 PPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 413 ~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
++..+|++||++++++|++++++
T Consensus 348 ~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 348 AHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998864
No 174
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.85 E-value=3.4e-20 Score=179.68 Aligned_cols=316 Identities=16% Similarity=0.139 Sum_probs=190.8
Q ss_pred cCCCCCH----HHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHh
Q 013204 46 ALGGSEP----RLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNA 121 (447)
Q Consensus 46 ~lG~~~p----~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~ 121 (447)
.+++++| ++.+++.+.+.... ..+.+...++++.+++++ +.++++|++||++|++.+++.+.
T Consensus 7 ~l~~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~l~~~la~~~---~~~~~i~~~sgt~al~~~l~~l~----- 72 (373)
T 3frk_A 7 SFKPMHDEIEYEIKFKFEEIYKRNW------FILGDEDKKFEQEFADYC---NVNYCIGCGNGLDALHLILKGYD----- 72 (373)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTC------CSSSHHHHHHHHHHHHHH---TSSEEEEESCHHHHHHHHHHHTT-----
T ss_pred CCCcccCCCCHHHHHHHHHHHHCCC------ccCCchHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHcC-----
Confidence 3444444 45555555554432 125677889999999997 34589999999999999999761
Q ss_pred cCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC-CcccCCCCCCChhHHHHHHHHHHHHHHHhh
Q 013204 122 LGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP-HYWRYAHPGETEEEYSTRLANNLEDLILKE 200 (447)
Q Consensus 122 ~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 200 (447)
-..+++|++..+.|++........ |.... .++.. +.+. . +++++++.+.
T Consensus 73 --~~~gd~Vi~~~~~~~~~~~~~~~~-g~~~~------------~~~~~~~~~~-----~--------d~~~l~~~l~-- 122 (373)
T 3frk_A 73 --IGFGDEVIVPSNTFIATALAVSYT-GAKPI------------FVEPDIRTYN-----I--------DPSLIESAIT-- 122 (373)
T ss_dssp --CCTTCEEEEETTSCTHHHHHHHHH-SCEEE------------EECEETTTTE-----E--------CGGGTGGGCC--
T ss_pred --CCCcCEEEECCCCcHHHHHHHHHc-CCEEE------------EEeccccccC-----c--------CHHHHHHhcC--
Confidence 133578999999998875443332 22111 11110 0000 0 0245555443
Q ss_pred CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec----ccCC
Q 013204 201 GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA----KALS 276 (447)
Q Consensus 201 ~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s----K~l~ 276 (447)
+++++|+ +++ ..|...+ +++|.++|++||+++|+||+|+ +|.. +.....+..+|++++| |.++
T Consensus 123 --~~~~~v~--~~n-~~G~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~---~~~~~~~~~~d~~~~S~~~~K~l~ 189 (373)
T 3frk_A 123 --EKTKAII--AVH-LYGQPAD----MDEIKRIAKKYNLKLIEDAAQA-HGSL---YKGMKVGSLGDAAGFSFYPAKNLG 189 (373)
T ss_dssp --TTEEEEE--EEC-CTTCCCC----HHHHHHHHHHHTCEEEEECTTC-TTCE---ETTEETTSSSSEEEEECCTTSSSC
T ss_pred --CCCeEEE--EEC-CCcCccc----HHHHHHHHHHcCCEEEEECCcc-cCCE---ECCEeccccccEEEEeCcCCCccC
Confidence 3566666 333 4565555 9999999999999999999997 3221 2223344447888877 9998
Q ss_pred C-cccceeEEEeC-hhHHHHhhhccCC-----CCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHh
Q 013204 277 S-AYMPIGAILVS-PEVSEVIHSQSNT-----LGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK 349 (447)
Q Consensus 277 g-g~~~~g~~~~~-~~~~~~~~~~~~~-----~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~ 349 (447)
+ | ..|+++.+ +++.+.+...... ......+.++..+++.++.+...++.+ ++..++.+++.+++++.|+
T Consensus 190 ~~g--~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~ 265 (373)
T 3frk_A 190 SLG--DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYL--DKWNEERRKIAQKYIAGIN 265 (373)
T ss_dssp CSS--SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCC
T ss_pred ccc--eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc
Confidence 7 4 36777775 4565555432110 001112234455677766665555433 3456777777888888776
Q ss_pred hccCCCceeeEe-eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC----------------------
Q 013204 350 AFSDSPIIGEIR-GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---------------------- 406 (447)
Q Consensus 350 ~l~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---------------------- 406 (447)
++. ..+..... ....+..+.+... ....+.+.|.++||.+++..
T Consensus 266 ~~~-~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (373)
T 3frk_A 266 NPN-VIIPVEADYAKHVWYTFVIRSE------------KRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPI 332 (373)
T ss_dssp CTT-EECCCCCTTEECCCSSEEEEES------------SHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHH
T ss_pred cCc-eEeccCCCCCceeeEEEEEEeC------------CHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHH
Confidence 652 11110000 1111111112111 14568899999999987432
Q ss_pred ------CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 407 ------DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 ------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+|++....+|++||++++++|+++..+
T Consensus 333 ~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 333 AEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp HHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred HHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 46999999999999999999999876543
No 175
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.85 E-value=4.5e-20 Score=179.38 Aligned_cols=323 Identities=13% Similarity=0.077 Sum_probs=198.9
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCc---CCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCC
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTA---SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPN 126 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~ 126 (447)
-+|++.+++.+..... ++.. ......++.+++++.+.. .+.++++|++||++|++.+++.+... .++
T Consensus 16 ~~~~v~~a~~~~~~~~--~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~----~~~- 85 (385)
T 2bkw_A 16 LSGAVQKALDVPSLGH--TSPE---FVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILS----KAP- 85 (385)
T ss_dssp CCHHHHHTTSCCCCCT--TSHH---HHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCT----TCS-
T ss_pred chHHHHHHHhcccccc--CCHH---HHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhcc----CCC-
Confidence 4577777665543321 1100 112345667777777632 13479999999999999999976200 012
Q ss_pred cceEEEEc-CCCccchhhhhcccCCccccCCCCCCCCcceecCC-CCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCc
Q 013204 127 KKKFIARQ-KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDC-PHYWRYAHPGETEEEYSTRLANNLEDLILKEGPET 204 (447)
Q Consensus 127 ~~~vi~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~ 204 (447)
+++|++++ +.||..........|.. +..++. +..+. . ++++|++.+.. ++
T Consensus 86 gd~vlv~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~-----~--------d~~~l~~~l~~---~~ 137 (385)
T 2bkw_A 86 NKNVLVVSTGTFSDRFADCLRSYGAQ------------VDVVRPLKIGES-----V--------PLELITEKLSQ---NS 137 (385)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHTTCE------------EEEECCSSTTSC-----C--------CHHHHHHHHHH---SC
T ss_pred CCeEEEEcCCcchHHHHHHHHHcCCc------------eEEEecCCCCCC-----C--------CHHHHHHHHhc---CC
Confidence 36777774 45666532222222221 112222 11100 0 14778887764 24
Q ss_pred EEEEEEccccCCCCCccCChhHHHHHHHHHHhc--CCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCccc
Q 013204 205 IAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKY--DILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSAYM 280 (447)
Q Consensus 205 ~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~--g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~ 280 (447)
+++|+++++++.+|.+.+ +++|.++|++| |+++|+||+|+ +|.. .+... ...+|++++ +|.++|+ .
T Consensus 138 ~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~d~~~~s~~K~~~~~-~ 207 (385)
T 2bkw_A 138 YGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFD--EWGVDFALTASQKAIGAP-A 207 (385)
T ss_dssp CSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTT--TTTCSEEEEESSSTTCCC-S
T ss_pred CCEEEEEccCCCcCeEcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc--ccccc--ccCceEEEecCccccccC-C
Confidence 567888888888888776 89999999999 99999999997 4332 12222 234687764 6988876 5
Q ss_pred ceeEEEeChhHHH-Hhhhc----cCCC-----------CccCcC---CCCCCcHHHHHHHHHHHHHHhh---hcHHHHHH
Q 013204 281 PIGAILVSPEVSE-VIHSQ----SNTL-----------GSFSHG---FTYSGHPVSCAVAIEALKIYKE---RNIVEQVN 338 (447)
Q Consensus 281 ~~g~~~~~~~~~~-~~~~~----~~~~-----------~~~~~~---~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~ 338 (447)
++|++++++++++ .+... .... ..+..+ ..++.++.+++++.++++.+.+ ++..++++
T Consensus 208 G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 287 (385)
T 2bkw_A 208 GLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHR 287 (385)
T ss_dssp CEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 7799999998776 54210 0000 001110 1235677788777788887653 34567778
Q ss_pred HHHHHHHHhH-hhccCCCceeeEe---eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee------CCE
Q 013204 339 KIAPKFQDGV-KAFSDSPIIGEIR---GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------GDN 408 (447)
Q Consensus 339 ~~~~~l~~~L-~~l~~~~~~~~~~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------g~~ 408 (447)
++.+++.+.| +++ +..+..... ..+.++.+.+.+ ...+.+.|.++||.+.++ .+.
T Consensus 288 ~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~gi~v~~g~~~~~~~~~ 352 (385)
T 2bkw_A 288 EMSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVAD--------------PPDVIAFLKSHGVVIAGGIHKDIGPKY 352 (385)
T ss_dssp HHHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECSC--------------HHHHHHHHHHTTEECBCCCCTTTGGGE
T ss_pred HHHHHHHHHHHHhc-CceecccCcccccCCceEEEecCC--------------HHHHHHHHHHCCeEEeCCCCcccCCCE
Confidence 8888888888 765 322111000 234555665532 345788889999998864 256
Q ss_pred EEEe-cC---CCCCHHHHHHHHHHHHHHHHH
Q 013204 409 IMMS-PP---FIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 409 iR~~-~~---~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+|++ .+ +.++++++++++++|++++++
T Consensus 353 iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 353 IRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp EEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred EEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 9999 43 357999999999999988754
No 176
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.85 E-value=2.2e-20 Score=182.29 Aligned_cols=313 Identities=13% Similarity=0.132 Sum_probs=195.1
Q ss_pred CHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceE
Q 013204 51 EPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKF 130 (447)
Q Consensus 51 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~v 130 (447)
+|++.+++.+.+....+. .+.+...++++.+++++ +.+++++++||++|++.+++.+. -.++++|
T Consensus 35 ~~~~~~a~~~~~~~~~~~-----~~~~~~~~l~~~la~~~---~~~~~i~~~~gt~al~~~l~~~~-------~~~gd~v 99 (391)
T 3dr4_A 35 DGNERDYVLECMDTTWIS-----SVGRFIVEFEKAFADYC---GVKHAIACNNGTTALHLALVAMG-------IGPGDEV 99 (391)
T ss_dssp CSSHHHHHHHHHHHTCCS-----SCSHHHHHHHHHHHHHH---TCSEEEEESSHHHHHHHHHHHHT-------CCTTCEE
T ss_pred CHHHHHHHHHHHHcCCcc-----CCChHHHHHHHHHHHHh---CCCcEEEeCCHHHHHHHHHHHcC-------CCCcCEE
Confidence 367788888777653211 24677889999999997 34489999999999999999771 1345789
Q ss_pred EEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC-CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 013204 131 IARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP-HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFI 209 (447)
Q Consensus 131 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi 209 (447)
++..+.|++........+.... .++.. +.+. .+ ++++++.+. +++++|+
T Consensus 100 l~~~~~~~~~~~~~~~~g~~~~-------------~~~~~~~~~~-----~d--------~~~l~~~~~----~~~~~v~ 149 (391)
T 3dr4_A 100 IVPSLTYIASANSVTYCGATPV-------------LVDNDPRTFN-----LD--------AAKLEALIT----PRTKAIM 149 (391)
T ss_dssp EEESSSCTHHHHHHHHTTCEEE-------------EECBCTTTCS-----BC--------GGGSGGGCC----TTEEEEC
T ss_pred EECCCchHHHHHHHHHCCCEEE-------------EEecCccccC-----cC--------HHHHHHhcC----CCceEEE
Confidence 9999999998655543322111 11111 0000 00 244555443 3566666
Q ss_pred EccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec----ccCCCcccceeEE
Q 013204 210 AEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA----KALSSAYMPIGAI 285 (447)
Q Consensus 210 ~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s----K~l~gg~~~~g~~ 285 (447)
++ + ..|...+ +++|.++|++||+++|+||+|+ +|... .-...+..+|++++| |++++| +.|++
T Consensus 150 ~~--n-~tG~~~~----~~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~~~~di~~~S~s~~K~l~~g--~gg~~ 216 (391)
T 3dr4_A 150 PV--H-LYGQICD----MDPILEVARRHNLLVIEDAAEA-VGATY---RGKKSGSLGDCATFSFFGNAIITTG--EGGMI 216 (391)
T ss_dssp CB--C-GGGCCCC----HHHHHHHHHHTTCEEEEECTTC-TTCEE---TTEETTSSSSEEEEECBTTSSSCCB--SCEEE
T ss_pred EE--C-CCCChhh----HHHHHHHHHHcCCEEEEECccc-ccceE---CCeeecccCCEEEEECCCCCcCCcC--CeEEE
Confidence 43 3 3455554 9999999999999999999997 32221 111223335788777 999874 56777
Q ss_pred EeC-hhHHHHhhhccCCC-------CccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCce
Q 013204 286 LVS-PEVSEVIHSQSNTL-------GSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPII 357 (447)
Q Consensus 286 ~~~-~~~~~~~~~~~~~~-------~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~ 357 (447)
+.+ +++.+.+....... .....+..+..+++.++.++..++.+ ++..++.+++.+++++.|+++ +..+.
T Consensus 217 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~ 293 (391)
T 3dr4_A 217 TTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERV--DEHLAARERVVGWYEQKLARL-GNRVT 293 (391)
T ss_dssp EESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHGGG-TTSEE
T ss_pred EECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-Ccccc
Confidence 765 45665554221100 00011223455666666555544433 446677888888888888876 33332
Q ss_pred ee-----EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-------------------------C
Q 013204 358 GE-----IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------------------------D 407 (447)
Q Consensus 358 ~~-----~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-------------------------~ 407 (447)
.. ....+.++.+.+...... ....+.+.|.++||.++++. .
T Consensus 294 ~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 364 (391)
T 3dr4_A 294 KPHVALTGRHVFWMYTVRLGEGLST---------TRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVD 364 (391)
T ss_dssp CCCCCTTSCCCCSSEEEEECSSCSS---------CHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHH
T ss_pred CcCCCCCCcceeEEEEEEECCccch---------hHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhC
Confidence 22 112222344555431110 14568899999999988652 3
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 408 ~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
.+|++++..+|++||++++++|++++
T Consensus 365 ~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 365 GLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred eEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 58999999999999999999998754
No 177
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.85 E-value=3.2e-19 Score=175.37 Aligned_cols=321 Identities=15% Similarity=0.109 Sum_probs=182.2
Q ss_pred CCHHHHHHHHHHHhc-CCcccc--cCcCCChHHHHHH----HHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhc
Q 013204 50 SEPRLVAAATAQLNT-LPFYHS--FWNRTTKPSLDLA----KELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL 122 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~-~~~~~~--~~~~~~~~~~~l~----~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~ 122 (447)
.+|++++++.+++.+ ....+. ..........+++ +++++.+. .+.+++ ++++|++|++.+++.+.
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g-~~~~~i-~~~sGt~a~~~~~~~~~------ 108 (417)
T 3n0l_A 37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFN-CKFANV-QPNSGSQANQGVYAALI------ 108 (417)
T ss_dssp CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT-CSEEEC-CCSSHHHHHHHHHHHHS------
T ss_pred CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhC-CCCcce-EeccHHHHHHHHHHHhc------
Confidence 489999999988843 211111 1111223333333 36666653 333344 55677999999999773
Q ss_pred CCCCcceEEEEcCCCccchhh--hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh
Q 013204 123 GRPNKKKFIARQKSYHGSTLI--AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 200 (447)
Q Consensus 123 ~~~~~~~vi~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 200 (447)
..++.|++.+++|++.... .....+... ....++....+. .++++|++.+...
T Consensus 109 --~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~----------~~~~~~~~~~~~-------------~d~~~l~~~i~~~ 163 (417)
T 3n0l_A 109 --NPGDKILGMDLSHGGHLTHGAKVSSSGKMY----------ESCFYGVELDGR-------------IDYEKVREIAKKE 163 (417)
T ss_dssp --CTTCEEEEECC----------------CCS----------EEEEECCCTTSS-------------CCHHHHHHHHHHH
T ss_pred --CCCCEEEecccccccccchhhhhhhhccee----------eeEeccCCCCCC-------------cCHHHHHHHHHhc
Confidence 3457899999999875321 111111100 011111111100 1147788887642
Q ss_pred CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCeeeec--ccCCC
Q 013204 201 GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDLVSFA--KALSS 277 (447)
Q Consensus 201 ~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~v~~s--K~l~g 277 (447)
++++|++.+.+ .|...+ +++|.++|++||+++|+||+|. |+...|... .... ..|++++| |+++|
T Consensus 164 ---~~~~v~~~~~~--~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~--~~~~-~~di~~~s~sK~l~g 231 (417)
T 3n0l_A 164 ---KPKLIVCGASA--YARVID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHP--SPFP-YAHVVSSTTHKTLRG 231 (417)
T ss_dssp ---CCSEEEECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC--CCTT-TCSEEEEESSTTTCS
T ss_pred ---CCeEEEECCcc--cCccCC----HHHHHHHHHHcCCEEEEECccchhhhhcccCC--Cccc-cceEEEeeCccccCC
Confidence 23455654433 365555 9999999999999999999974 321112110 0001 35888765 99965
Q ss_pred cccceeEEEeC-hhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccC
Q 013204 278 AYMPIGAILVS-PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSD 353 (447)
Q Consensus 278 g~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~ 353 (447)
+++|+++++ +++++.+... ..++.+.++++..+++..+++..... ++..+++.++.+++.+.|++. +
T Consensus 232 --~~~G~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 302 (417)
T 3n0l_A 232 --PRGGIIMTNDEELAKKINSA------IFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR-K 302 (417)
T ss_dssp --CSCEEEEESCHHHHHHHHHH------HTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred --CCeeEEEECCHHHHHHHhhh------hCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 568999998 7888877532 12222334456666666666655322 345667777778888888763 2
Q ss_pred CCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-----------CEEEEecCCC----CC
Q 013204 354 SPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-----------DNIMMSPPFI----MS 418 (447)
Q Consensus 354 ~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-----------~~iR~~~~~~----~t 418 (447)
..+.. ....+.++.+.+..... ....+.+.|.++||.+.+.. +.+|++++.. ++
T Consensus 303 ~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 371 (417)
T 3n0l_A 303 FKLVS-DGTDNHLVLMSFLDREF----------SGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFK 371 (417)
T ss_dssp CEEGG-GSCSSSEEEEECTTSSS----------CHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCC
T ss_pred ceecc-CCCCceEEEEEcccCCC----------CHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCC
Confidence 22111 01223355555543211 14457788889999987431 4599986532 67
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013204 419 PEEVDELISKYGKALKA 435 (447)
Q Consensus 419 ~e~i~~~~~~l~~~l~~ 435 (447)
+++|++++++|++++++
T Consensus 372 ~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 372 EKEMEIVSNYIADILDD 388 (417)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999864
No 178
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.85 E-value=7.3e-20 Score=174.32 Aligned_cols=274 Identities=14% Similarity=0.067 Sum_probs=176.9
Q ss_pred HHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhc---ccCCccccCCC
Q 013204 81 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAAS---LSGLPALHQKF 157 (447)
Q Consensus 81 ~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~---~~~~~~~~~~~ 157 (447)
++++++++++. .++.++++||++|+..+++.+. .++++|++.++.||+....... ..|...
T Consensus 2 ~l~~~la~~~g---~~~~i~~~sG~~a~~~~~~~~~--------~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~----- 65 (331)
T 1pff_A 2 ALEGKIAKLEH---AEACAATASGMGAIAASVWTFL--------KAGDHLISDDCLYGCTHALFEHQLRKFGVEV----- 65 (331)
T ss_dssp HHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHHHTHHHHTTCEE-----
T ss_pred hHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhc--------CCCCEEEEcCCCcchHHHHHHHHHHhcCCEE-----
Confidence 46778888763 2367788889999999999653 2347899999999887433321 112111
Q ss_pred CCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHh-
Q 013204 158 DLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKK- 236 (447)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~- 236 (447)
..++..+ ++++++.+. +++++|+++++++++|.+.+ +++|.++|++
T Consensus 66 -------~~~~~~d------------------~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~ 112 (331)
T 1pff_A 66 -------DFIDMAV------------------PGNIEKHLK----PNTRIVYFETPANPTLKVID----IEDAVKQARKQ 112 (331)
T ss_dssp -------EEECTTS------------------TTHHHHTCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTS
T ss_pred -------EEeCCCC------------------HHHHHHhhc----CCCeEEEEECCCCCcCcccC----HHHHHHHHhhh
Confidence 1111111 255666553 35788889999888888876 9999999999
Q ss_pred cCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccc-eeEEEeCh-hHHHHhhhccCCCCccCcC-CCC
Q 013204 237 YDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMP-IGAILVSP-EVSEVIHSQSNTLGSFSHG-FTY 311 (447)
Q Consensus 237 ~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~-~g~~~~~~-~~~~~~~~~~~~~~~~~~~-~t~ 311 (447)
||+++|+||+|+. |..... . .+ ..|++ +++|.+++++.+ +|++++++ ++++.+.. .... .+.
T Consensus 113 ~~~~li~D~a~~~-~~~~~~--~-~~--~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~-------~~~~~~~~ 179 (331)
T 1pff_A 113 KDILVIVDNTFAS-PILTNP--L-DL--GVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQ-------GIKDITGA 179 (331)
T ss_dssp SSCEEEEECTTTH-HHHCCG--G-GG--TCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHT-------CCCCCCCC
T ss_pred cCCEEEEECCCcc-cccCCh--h-hc--CCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHH-------HHHhhcCC
Confidence 9999999999973 222111 1 12 35665 578999876567 78999998 88888863 2233 345
Q ss_pred CCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc-----------cCCCcee----eEeeeeeEEEEEeecCCC
Q 013204 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-----------SDSPIIG----EIRGTGLILGTEFADNKS 376 (447)
Q Consensus 312 ~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l-----------~~~~~~~----~~~~~g~~~~i~~~~~~~ 376 (447)
..+++++.++.++++.+.. ..+...++.+.+.+.+++. .+.+.+. ..++.+.++.+.+.+
T Consensus 180 ~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--- 254 (331)
T 1pff_A 180 IISPHDAWLITRGTLTLDM--RVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG--- 254 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS---
T ss_pred CCCHHHHHHHHcCcchHHH--HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC---
Confidence 6778887776667764321 1222333333333333221 1111110 113456777776641
Q ss_pred CCCCCCCCcchHHHHHHHHHHcCceEEee-------------------------------CCEEEEecCCCCCHHHHHHH
Q 013204 377 PNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------------------------------GDNIMMSPPFIMSPEEVDEL 425 (447)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------------------------------g~~iR~~~~~~~t~e~i~~~ 425 (447)
...+.+.|.++||++... .+.+|++++..+++++|+.+
T Consensus 255 -----------~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l 323 (331)
T 1pff_A 255 -----------LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDL 323 (331)
T ss_dssp -----------HHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHH
T ss_pred -----------HHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHH
Confidence 234677888899976432 25799999999999999999
Q ss_pred HHHHHHH
Q 013204 426 ISKYGKA 432 (447)
Q Consensus 426 ~~~l~~~ 432 (447)
++.|++.
T Consensus 324 ~~~l~~~ 330 (331)
T 1pff_A 324 KQALDLV 330 (331)
T ss_dssp HHHHHTC
T ss_pred HHHHHHh
Confidence 9998754
No 179
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.85 E-value=1e-20 Score=182.36 Aligned_cols=315 Identities=12% Similarity=0.030 Sum_probs=186.1
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcce
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~ 129 (447)
.+|++.+++.+.+.... .++.+...++++++++.+ +.+..++++||++|+..+++.+... +++.
T Consensus 27 ~~p~v~~ai~~~~~~~~------~~~~~~~~~l~~~la~~~---~~~~~i~~~~g~~a~~~a~~~~~~~-------g~~~ 90 (359)
T 3pj0_A 27 VLTEALQNIDDNLESDI------YGNGAVIEDFETKIAKIL---GKQSAVFFPSGTMAQQIALRIWADR-------KENR 90 (359)
T ss_dssp HHHHHTTTSCTTCBCCB------TTBSHHHHHHHHHHHHHH---TCSEEEEESCHHHHHHHHHHHHHHH-------HTCC
T ss_pred CCHHHHHHHHhhcccCc------ccCCHHHHHHHHHHHHHh---CCCcEEEeCCHHHHHHHHHHHHHhc-------CCCc
Confidence 36777777766333211 224567889999999987 3345677799999999999987533 2334
Q ss_pred EEEEcCCCccchh--hhh-cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEE
Q 013204 130 FIARQKSYHGSTL--IAA-SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIA 206 (447)
Q Consensus 130 vi~~~~~yhg~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a 206 (447)
+|+.++.+|.+.. ... ...|... ..++.++ +. . +++++++. .++++
T Consensus 91 vvi~~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~-~~-----~--------d~~~l~~~-----~~~~~ 139 (359)
T 3pj0_A 91 RVAYHPLSHLEIHEQDGLKELQQITP------------LLLGTAN-QL-----L--------TIDDIKSL-----REPVS 139 (359)
T ss_dssp EEEECTTCHHHHSSTTHHHHHHCCEE------------EECSCTT-SC-----C--------CHHHHHTC-----SSCCS
T ss_pred EEEEeccceeeehhcchHHHhcCceE------------EecCCcC-CC-----c--------CHHHHHhc-----cCCce
Confidence 6666777765432 111 1122211 1111100 00 0 13566654 23567
Q ss_pred EEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC--ccccccccccCCCCCCee--eecccCCCcccce
Q 013204 207 AFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG--RLGTMFGCDKYSIKPDLV--SFAKALSSAYMPI 282 (447)
Q Consensus 207 ~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g--~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~ 282 (447)
+|++++.++..|..+++.+++++|.++|++||++||+||+|..+. ..+.. ...+....|++ ++||+++++ .+
T Consensus 140 ~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~~~~~-~g- 215 (359)
T 3pj0_A 140 SVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKS--AEEICALFDSVYVSFYKGIGGI-AG- 215 (359)
T ss_dssp EEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCC--HHHHHTTCSEEEEESSSTTCCS-SC-
T ss_pred EEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCC--HHHhhccCCEEEEeccccCCCc-ce-
Confidence 777777654443366788999999999999999999999875221 11111 10111234665 688998875 34
Q ss_pred eEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEee
Q 013204 283 GAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG 362 (447)
Q Consensus 283 g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~ 362 (447)
|++++++++++.+.... ....+.++..++.+ +++.++++.. .+..++..++.+++.+.|+++.+..+. ....
T Consensus 216 g~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~-~a~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~ 287 (359)
T 3pj0_A 216 AILAGNDDFVQEAKIWK----RRYGGDLISLYPYI-LSADYYFEKR--IGKMAEYFEAAKGLAERFNSCSGVKTV-PEVP 287 (359)
T ss_dssp EEEEECHHHHHHHHHHH----HHTTCCCSCCHHHH-HHHHHHHHHH--GGGHHHHHHHHHHHHHHHHTSTTEEEE-SSSC
T ss_pred EEEECCHHHHHHHHHHH----HHhCCCcchhHHHH-HHHHHHHHHH--HHHhHHHHHHHHHHHHHHhhCCCceee-ccCC
Confidence 78889999988875311 11122233334444 3344556543 233455677778888888775221110 0123
Q ss_pred eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-------CEEEEecC---CCCCHHHHHHHHHHHHHH
Q 013204 363 TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------DNIMMSPP---FIMSPEEVDELISKYGKA 432 (447)
Q Consensus 363 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-------~~iR~~~~---~~~t~e~i~~~~~~l~~~ 432 (447)
.+.++.+.+..... .....+.+.|.++||++.++. ..+|++.. ...+.+++++++++|.+.
T Consensus 288 ~~~~~~~~~~~~~~---------~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 288 VSNMFHVYFENSAD---------EIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp SSSEEEEEESSCHH---------HHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred cceEEEEEecCccc---------hhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 45555666643210 013567888999999988652 35888643 346899999999998765
No 180
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.85 E-value=4.9e-19 Score=172.43 Aligned_cols=318 Identities=11% Similarity=0.093 Sum_probs=196.2
Q ss_pred CHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceE
Q 013204 51 EPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKF 130 (447)
Q Consensus 51 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~v 130 (447)
+|++++++.+++...... ..+.+...++++.+++++. .++.++++||++|++.+++.+. . .++++|
T Consensus 16 ~~~~~~a~~~~l~~~~~~----~~~~~~~~~l~~~la~~~~---~~~~i~~~sGt~al~~~l~~l~------~-~~gd~V 81 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQWW----RMGGDEVNSFEREFAAHHG---AAHALAVTNGTHALELALQVMG------V-GPGTEV 81 (388)
T ss_dssp CHHHHHHHHHHHHTSCCB----TTTCSHHHHHHHHHHHHTT---CSEEEEESCHHHHHHHHHHHTT------C-CTTCEE
T ss_pred CHHHHHHHHHHHHcCCee----ecCCHHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHcC------C-CCcCEE
Confidence 389999999998764221 2245678899999999973 2356677778999999999761 1 234789
Q ss_pred EEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc-ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 013204 131 IARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY-WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFI 209 (447)
Q Consensus 131 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi 209 (447)
++..+.||+........ |... ..++.... +. .++++|++.+. +++++|+
T Consensus 82 i~~~~~~~~~~~~~~~~-g~~~------------~~v~~~~~~~~-------------~d~~~l~~~i~----~~~~~v~ 131 (388)
T 1b9h_A 82 IVPAFTFISSSQAAQRL-GAVT------------VPVDVDAATYN-------------LDPEAVAAAVT----PRTKVIM 131 (388)
T ss_dssp EEESSSCTHHHHHHHHT-TCEE------------EEECBCTTTCC-------------BCHHHHHHHCC----TTEEEEC
T ss_pred EECCCccHHHHHHHHHc-CCEE------------EEEecCCCcCC-------------CCHHHHHHhcC----cCceEEE
Confidence 99999999986544332 2211 11111100 00 01367777664 3466666
Q ss_pred EccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCeeeec--ccCCCcccceeEEE
Q 013204 210 AEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGAIL 286 (447)
Q Consensus 210 ~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~~ 286 (447)
|++++ |.+.+ +++|.++|++||+++|+||+|+ |....|.. ...++ ..++.+|| |.++|| ++|+++
T Consensus 132 --~~n~t-G~~~~----l~~i~~la~~~~~~li~D~a~~~g~~~~~~~--~~~~~-~i~~~S~s~~K~l~g~--~~G~~~ 199 (388)
T 1b9h_A 132 --PVHMA-GLMAD----MDALAKISADTGVPLLQDAAHAHGARWQGKR--VGELD-SIATFSFQNGKLMTAG--EGGAVV 199 (388)
T ss_dssp --CBCGG-GCCCC----HHHHHHHHHHHTCCBCEECTTCTTCEETTEE--GGGSS-SCEEEECCTTSSSCSS--SCEEEE
T ss_pred --EeCCc-cCcCC----HHHHHHHHHHcCCEEEEecchhcCCccCCee--ccccc-ceEEEEccCCCcccCC--CeEEEE
Confidence 66654 55554 8999999999999999999998 23222221 12222 13344555 677664 689999
Q ss_pred eChh-H--HHHhhhccCC-----CCcc---CcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCC
Q 013204 287 VSPE-V--SEVIHSQSNT-----LGSF---SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSP 355 (447)
Q Consensus 287 ~~~~-~--~~~~~~~~~~-----~~~~---~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~ 355 (447)
++++ + ++.+...... ...+ ..+.++..+++.++++.+.++.++ +..++.+++.+++.+.|+++++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~--~~~~~~~~~~~~l~~~L~~~~~~~ 277 (388)
T 1b9h_A 200 FPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLD--EQIAVRDERWTLLSRLLGAIDGVV 277 (388)
T ss_dssp ECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTSTTCE
T ss_pred ECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCCCcc
Confidence 8875 6 5555321100 0001 112233456777666655555443 355677777888888887763222
Q ss_pred ceee----EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-------------------------
Q 013204 356 IIGE----IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG------------------------- 406 (447)
Q Consensus 356 ~~~~----~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g------------------------- 406 (447)
.... .+..+.++.+.+..... .....+.+.|.++||.++++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (388)
T 1b9h_A 278 PQGGDVRADRNSHYMAMFRIPGLTE---------ERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARR 348 (388)
T ss_dssp ECCCCTTCCBCCCSEEEEECTTCCH---------HHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHT
T ss_pred ccCCCcCCCccceEEEEEEeCCcCc---------ccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccC
Confidence 1111 01224566666643100 014568889999999987531
Q ss_pred ---------CEEEEecCCCC-CHHHHHHHHHHHHHHHHH
Q 013204 407 ---------DNIMMSPPFIM-SPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 ---------~~iR~~~~~~~-t~e~i~~~~~~l~~~l~~ 435 (447)
+.+|++....+ |++||+++++.|++++++
T Consensus 349 ~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 349 CPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp CHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 14899988888 999999999999988754
No 181
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.85 E-value=3.2e-19 Score=173.81 Aligned_cols=253 Identities=11% Similarity=0.016 Sum_probs=162.4
Q ss_pred CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCC
Q 013204 74 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGL 150 (447)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~ 150 (447)
.+.+...++++++++++. .+++++++||++|+..+++.+. .++++|++.++.||+..... ....|.
T Consensus 56 ~~~~~~~~l~~~la~~~g---~~~~i~~~sG~~ai~~~~~~~~--------~~gd~vl~~~~~y~~~~~~~~~~~~~~g~ 124 (389)
T 3acz_A 56 LGNPTVEQFEEMVCSIEG---AAGSAAFGSGMGAISSSTLAFL--------QKGDHLIAGDTLYGCTVSLFTHWLPRFGI 124 (389)
T ss_dssp TCCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHTTTC--------CTTCEEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHHHHHHcCC
Confidence 356778899999999873 3478889999999999998652 33578999999999864332 111221
Q ss_pred ccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHH
Q 013204 151 PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKV 230 (447)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l 230 (447)
. +..++.. +++++++.+. +++++|++|++++.+|.+.+ +++|
T Consensus 125 ~------------~~~v~~~------------------d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i 166 (389)
T 3acz_A 125 E------------VDLIDTS------------------DVEKVKAAWK----PNTKMVYLESPANPTCKVSD----IKGI 166 (389)
T ss_dssp E------------EEEECTT------------------CHHHHHHTCC----TTEEEEEEESSCTTTCCCCC----HHHH
T ss_pred E------------EEEECCC------------------CHHHHHHhcC----CCCeEEEEECCCCCCCeecC----HHHH
Confidence 1 1112211 1366666554 36789999999888888876 9999
Q ss_pred HHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccce-eEEEeCh-hHHHHhhhccCCCCccC
Q 013204 231 QAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPI-GAILVSP-EVSEVIHSQSNTLGSFS 306 (447)
Q Consensus 231 ~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~-g~~~~~~-~~~~~~~~~~~~~~~~~ 306 (447)
.++|++||+++|+||+|+++ ..+.+ .+..+|++ +++|.+++++.++ |++++++ ++++.+... .
T Consensus 167 ~~~~~~~~~~livD~~~~~~-~~~~~-----~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~-------~ 233 (389)
T 3acz_A 167 AVVCHERGARLVVDATFTSP-CFLKP-----LELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFY-------R 233 (389)
T ss_dssp HHHHHHHTCEEEEECTTTCT-TTCCG-----GGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHH-------H
T ss_pred HHHHHHcCCEEEEECCCccc-cccCc-----cccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHH-------H
Confidence 99999999999999999854 22222 12457888 5789999866787 9999998 888777532 1
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhcc-----------CCCcee----eEeeeeeEEEEEe
Q 013204 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS-----------DSPIIG----EIRGTGLILGTEF 371 (447)
Q Consensus 307 ~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~-----------~~~~~~----~~~~~g~~~~i~~ 371 (447)
.......++..+.++++.++.+. ...++..++.+.+.+.|++.. .++... ..++.|.++.+.+
T Consensus 234 ~~~g~~~~~~~~~~~~~~l~~l~--~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l 311 (389)
T 3acz_A 234 KDAGSLMAPMDAFLCARGMKTLP--IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEM 311 (389)
T ss_dssp HHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEE
T ss_pred HhcCCCCCHHHHHHHHcCccHHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEE
Confidence 11123357777777777775432 123344444555555554421 111110 0134577777777
Q ss_pred ecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe
Q 013204 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV 404 (447)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~ 404 (447)
.. .....+.+.+.|+++..
T Consensus 312 ~~--------------~~~~~~~l~~~~i~~~~ 330 (389)
T 3acz_A 312 KS--------------FEAAKKLMEHLKVCTLA 330 (389)
T ss_dssp SS--------------HHHHHHHHTTCSSSEEB
T ss_pred CC--------------HHHHHHHHHhCCCcEEC
Confidence 53 12345566677877654
No 182
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.85 E-value=2.1e-19 Score=180.42 Aligned_cols=344 Identities=13% Similarity=0.034 Sum_probs=200.8
Q ss_pred CHHHHHHHHHHHhcCC----cccccCcCCChHHHHHHHHHHHhcC--cCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCC
Q 013204 51 EPRLVAAATAQLNTLP----FYHSFWNRTTKPSLDLAKELLEMFT--ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 51 ~p~v~~a~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
+.++.+++.+.+.+.. ..++...+..+....+++.+.+... +..++++++++|+++|+..+++++. .
T Consensus 103 P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~-------~ 175 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV-------S 175 (498)
T ss_dssp CHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC-------C
T ss_pred CHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc-------C
Confidence 4455577776666522 1222223344556666666665531 2357899999999999999999763 1
Q ss_pred CC---cceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC
Q 013204 125 PN---KKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 201 (447)
Q Consensus 125 ~~---~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 201 (447)
++ ++.|++..+.|+.+.......+.... .+++.....|. .++++|++.+....
T Consensus 176 ~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~~v-------------~~~~~~~~~~~-----------~d~~~le~~l~~~~ 231 (498)
T 3ihj_A 176 GGGKSRTGVMIPIPQYPLYSAVISELDAIQV-------------NYYLDEENCWA-----------LNVNELRRAVQEAK 231 (498)
T ss_dssp CCGGGSEEEEEEESCCTHHHHHHHHTTCEEE-------------EEECBGGGTTB-----------CCHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCchhHHHHHHHcCCEEE-------------EeeccccccCC-----------CCHHHHHHHHHhhh
Confidence 22 35899999999887654443222111 11111000000 01478888887532
Q ss_pred CC-cEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc-cc-cccc----CC----CCCCe--
Q 013204 202 PE-TIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT-MF-GCDK----YS----IKPDL-- 268 (447)
Q Consensus 202 ~~-~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~-~~-~~~~----~~----~~~d~-- 268 (447)
.. ++++|++...++.+| .+.+.+.+++|.++|++||+++|+||+|..+...+. .+ .+.. .+ -...+
T Consensus 232 ~~~~~k~i~l~np~NPTG-~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 310 (498)
T 3ihj_A 232 DHCDPKVLCIINPGNPTG-QVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELAS 310 (498)
T ss_dssp TTSEEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEE
T ss_pred ccCCCeEEEEECCCCCCC-CcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEE
Confidence 22 344444444444455 456788899999999999999999999987644332 11 1111 00 01122
Q ss_pred -eeecccCCC-cccceeEEE---eChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHH-----------HHh-hh
Q 013204 269 -VSFAKALSS-AYMPIGAIL---VSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK-----------IYK-ER 331 (447)
Q Consensus 269 -v~~sK~l~g-g~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~-----------~~~-~~ 331 (447)
-+|||.+.| .++++|+++ .++++++.+... . ....+.+.+++.++.++++ .++ ..
T Consensus 311 ~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~-------~-~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~ 382 (498)
T 3ihj_A 311 FHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKL-------L-SVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKE 382 (498)
T ss_dssp EEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHH-------H-HHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHH
T ss_pred EeccccccccCcccceEEEEEecCCHHHHHHHHHH-------H-hccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHH
Confidence 268999942 238999998 588888887642 1 1234456667666555542 121 13
Q ss_pred cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEE-EEEeecCCCCCC--CCCCCcchHHH-HHHHHHHcCceEEeeC-
Q 013204 332 NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLIL-GTEFADNKSPNE--PFPPEWGIGAY-FGAQCEKHGMLVRVSG- 406 (447)
Q Consensus 332 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~-~i~~~~~~~~~~--~~~~~~~~~~~-~~~~l~~~Gi~~~~~g- 406 (447)
...+.++++.+.+.+.|+++ +.+......|.++ .+.+..+..... .... ...... +.+.|.++||++.++.
T Consensus 383 ~~~~~l~~~~~~l~~~L~~~---~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g-~~~~~~~~~~ll~~~gI~v~pG~~ 458 (498)
T 3ihj_A 383 SVLGNLAKKAKLTEDLFNQV---PGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQ-MAPDMFYCMKLLEETGICVVPGSG 458 (498)
T ss_dssp HHHHHHHHHHHHHHHHHHTS---TTEECCCCCBSSEECCEECCCHHHHHHHHHTT-SCHHHHHHHHHHHHHCBCCEEGGG
T ss_pred HHHHHHHHHHHHHHHHHhcC---CCcEecCCCeEEEEEEeccCchhhhHHHHhcC-CCcHHHHHHHHHHHCCEEEEeCcc
Confidence 45567777788888888765 3344444455443 334431100000 0000 001122 3455667899998741
Q ss_pred -------CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013204 407 -------DNIMMSPPFIMSPEEVDELISKYGKALKATEERV 440 (447)
Q Consensus 407 -------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 440 (447)
..+|++. .++++++++++++|.+++++++++.
T Consensus 459 f~~~~~~~~~Ris~--~~~~e~l~~~i~~L~~~~~~~~~~~ 497 (498)
T 3ihj_A 459 FGQREGTYHFRMTI--LPPVEKLKTVLQKVKDFHINFLEKY 497 (498)
T ss_dssp TCCCTTCCBEEEEC--CSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCCEEEEEe--CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3699994 6899999999999999999887653
No 183
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.84 E-value=1.8e-19 Score=176.41 Aligned_cols=281 Identities=16% Similarity=0.122 Sum_probs=182.4
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhh---hhcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLI---AASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~---~~~~~~~~ 151 (447)
..+...++++.+++++. .+++++++||++|+..+++.+. .+++.|++.++.|++.... .....|..
T Consensus 60 ~~~~~~~l~~~ia~~~g---~~~~i~~~~g~~ai~~~~~~l~--------~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~ 128 (404)
T 1e5e_A 60 GNPTVSNLEGKIAFLEK---TEACVATSSGMGAIAATVLTIL--------KAGDHLISDECLYGCTHALFEHALTKFGIQ 128 (404)
T ss_dssp CCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHHHTHHHHTTCE
T ss_pred cChHHHHHHHHHHHHhC---CCcEEEeCChHHHHHHHHHHHh--------CCCCEEEEeCCCchhHHHHHHHHHHHcCCE
Confidence 45667789999999873 3478999999999999998653 3347899999999876431 12112211
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++..+ ++++++.+. +++++|+++++++.+|.+.+ +++|.
T Consensus 129 ------------~~~v~~~d------------------~~~l~~~i~----~~t~~v~l~~p~NptG~v~~----l~~i~ 170 (404)
T 1e5e_A 129 ------------VDFINTAI------------------PGEVKKHMK----PNTKIVYFETPANPTLKIID----MERVC 170 (404)
T ss_dssp ------------EEEECTTS------------------TTHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHH
T ss_pred ------------EEEECCCC------------------HHHHHHhcC----CCCcEEEEECCCCCCCcccC----HHHHH
Confidence 11122111 266776664 35778888888888887775 99999
Q ss_pred HHHHh-cCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccce-eEEEeChhHHH-HhhhccCCCCccC
Q 013204 232 AVVKK-YDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPI-GAILVSPEVSE-VIHSQSNTLGSFS 306 (447)
Q Consensus 232 ~l~~~-~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~-g~~~~~~~~~~-~~~~~~~~~~~~~ 306 (447)
++|++ ||+++|+||+|+.+... .+. + + ..|++ ++||.++++++++ |++++++++++ .+... .
T Consensus 171 ~la~~~~~~~li~De~~~~~~~~-~~~--~-~--~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~-------~ 237 (404)
T 1e5e_A 171 KDAHSQEGVLVIADNTFCSPMIT-NPV--D-F--GVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVG-------I 237 (404)
T ss_dssp HHHHTSTTCEEEEECTTTCTTTC-CGG--G-G--TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTC-------C
T ss_pred HHHHhhcCCEEEEECCCchhhhC-Ccc--c-c--CCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHH-------H
Confidence 99999 99999999999865321 121 1 2 35666 5789999866787 99999999877 77531 2
Q ss_pred cCC-CCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhcc-----------CCCcee----eEeeeeeEEEEE
Q 013204 307 HGF-TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS-----------DSPIIG----EIRGTGLILGTE 370 (447)
Q Consensus 307 ~~~-t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~-----------~~~~~~----~~~~~g~~~~i~ 370 (447)
... ....+++++.++.++++.+ +...++..++.+.+.+.|++.. ..+.+. ..++.|.++.++
T Consensus 238 ~~~~g~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~ 315 (404)
T 1e5e_A 238 KDITGSVISPHDAWLITRGLSTL--NIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFI 315 (404)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEE
T ss_pred HhCCCCCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEE
Confidence 222 3456788888887777643 1223333444444444444321 111110 023457888777
Q ss_pred eecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------------------------------CCEEEEecCCCCCH
Q 013204 371 FADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------------------------------GDNIMMSPPFIMSP 419 (447)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------------------------------g~~iR~~~~~~~t~ 419 (447)
+... .....+.+.+.||+.... .+.+|+++..
T Consensus 316 ~~~~-------------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~---- 378 (404)
T 1e5e_A 316 LKSG-------------FEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI---- 378 (404)
T ss_dssp ETTH-------------HHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----
T ss_pred eCCC-------------HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----
Confidence 6431 123455666778754421 2569999665
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKALKAT 436 (447)
Q Consensus 420 e~i~~~~~~l~~~l~~~ 436 (447)
|+++++++.|+++++.+
T Consensus 379 e~~~~li~~l~~al~~~ 395 (404)
T 1e5e_A 379 EDADELIADFKQGLDAL 395 (404)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 89999999999988754
No 184
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.84 E-value=3.2e-19 Score=171.74 Aligned_cols=317 Identities=14% Similarity=0.060 Sum_probs=196.9
Q ss_pred CCHHHHHHHHHHHhcCC--cccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCc
Q 013204 50 SEPRLVAAATAQLNTLP--FYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNK 127 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~ 127 (447)
.+|++.+++.+.+.+.. ..+.. ....+...++.+++++.+...+.+++++++||++|+..+++.+. ..
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~---------~~ 84 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRS-KKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV---------EK 84 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTS-HHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC---------SS
T ss_pred CCHHHHHHHHHHhcCCccCcCCCC-HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc---------CC
Confidence 57899999988876533 11110 01124456777888888643345789999999999999999762 22
Q ss_pred ceEEEEcCCCccchhh-hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEE
Q 013204 128 KKFIARQKSYHGSTLI-AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIA 206 (447)
Q Consensus 128 ~~vi~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a 206 (447)
++++..+.+++.... .....|... ..++.+..+. .+ +++++ . .++++
T Consensus 85 -~~i~~~~~~~~~~~~~~~~~~g~~~------------~~v~~~~~~~-----~d--------~~~l~-----~-~~~~~ 132 (362)
T 3ffr_A 85 -KSFHCVNGSFSKRFYEFAGELGREA------------YKEEAAFGKG-----FY--------PADIT-----V-PADAE 132 (362)
T ss_dssp -EEEEEECSHHHHHHHHHHHHTTCEE------------EEEECCTTCC-----CC--------GGGCC-----C-CTTCC
T ss_pred -cEEEEcCcHHHHHHHHHHHHhCCCe------------EEEecCCCCC-----CC--------HHHHh-----c-cCCcc
Confidence 666666666553221 111112111 1112111110 00 13444 1 23566
Q ss_pred EEEEccccCCCCCccCChhHHHHHHHHHHhc-CCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCccccee
Q 013204 207 AFIAEPVIGAGGVIPPPATYFEKVQAVVKKY-DILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSAYMPIG 283 (447)
Q Consensus 207 ~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~-g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~~~g 283 (447)
+|+++++++.+|.+.+ +++|.++|++| |+++|+||+|+ ++... . ... ..|++++ +|.++++ .++|
T Consensus 133 ~v~~~~~~nptG~~~~----l~~i~~la~~~p~~~li~D~a~~-~~~~~--~--~~~--~~d~~~~s~~K~~~~~-~G~g 200 (362)
T 3ffr_A 133 IICLTHNETSSGVSMP----VEDINTFRDKNKDALIFVDAVSS-LPYPK--F--DWT--KIDSVFFSVQKCFGLP-AGLG 200 (362)
T ss_dssp EEEEESEETTTTEECC----HHHHTTSGGGSTTSEEEEECTTT-TTSSC--C--CTT--SCSEEEEETTSTTCCC-SCCE
T ss_pred EEEEEcCCCCcceeCC----HHHHHHHHHhCCCCEEEEecccc-cCCcc--c--Chh--HCcEEEEecccccCCC-CceE
Confidence 7777777778887776 99999999999 99999999987 32211 1 111 1677754 5999855 4678
Q ss_pred EEEeChhHHHHhhhccC--CCCcc-----------C-cCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHH
Q 013204 284 AILVSPEVSEVIHSQSN--TLGSF-----------S-HGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQD 346 (447)
Q Consensus 284 ~~~~~~~~~~~~~~~~~--~~~~~-----------~-~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~ 346 (447)
++++++++++.+..... ....+ . ....++.+..++.++.++++.+.. ++..++.+++.+++.+
T Consensus 201 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~ 280 (362)
T 3ffr_A 201 VWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINT 280 (362)
T ss_dssp EEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 89999988776653210 00000 0 011345567777777777876554 3456777778888888
Q ss_pred hHhhccCCCcee--eEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----CCEEEEecCCCCCH
Q 013204 347 GVKAFSDSPIIG--EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----GDNIMMSPPFIMSP 419 (447)
Q Consensus 347 ~L~~l~~~~~~~--~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----g~~iR~~~~~~~t~ 419 (447)
.|++++...... .....+.++.+.+.. . ...+.+.|.++||.+.++ ++.+|+++...+++
T Consensus 281 ~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~ 347 (362)
T 3ffr_A 281 YIESSKVFSFGVEDAKLRSMTTIVANTTM-L------------PGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSL 347 (362)
T ss_dssp HHHHCSSEEESSSCGGGBCSSEEEEEESS-C------------HHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCH
T ss_pred HHHHccCceeccCChhhcCCceEEEecCC-C------------HHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCH
Confidence 887763221111 001123445555543 1 456889999999999864 36799999988999
Q ss_pred HHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKAL 433 (447)
Q Consensus 420 e~i~~~~~~l~~~l 433 (447)
+++++++++|++.+
T Consensus 348 e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 348 EQVHKLVQTLKEKI 361 (362)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
No 185
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.84 E-value=2e-19 Score=175.93 Aligned_cols=337 Identities=12% Similarity=0.026 Sum_probs=189.8
Q ss_pred EEEecCCccccccCCCC--CHHHHHHHHHHHhc-CCcccccCcCCChHHHHHHHHHHHhcCc-----CCCCeEEE--eCC
Q 013204 34 KYLDSLAGLWCTALGGS--EPRLVAAATAQLNT-LPFYHSFWNRTTKPSLDLAKELLEMFTA-----SKMAKVFF--TNS 103 (447)
Q Consensus 34 ~~lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~v~~--~~s 103 (447)
..+||+.+......++. .|.+.+++.+.... ....+.. .....++.+.+++++.. .+++++++ ++|
T Consensus 29 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~----~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G 104 (401)
T 7aat_A 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLP----IAGLADFTRASAELALGENSEAFKSGRYVTVQGIS 104 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCC----TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCC----CCCCHHHHHHHHHHhcCCCccccccCceEEEecCc
Confidence 47888777532222321 24678877776653 2122221 12234455555555421 12678877 999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC--cccCCCCCCC
Q 013204 104 GSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH--YWRYAHPGET 181 (447)
Q Consensus 104 GseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 181 (447)
|++|+..+++.+... . .+++.|++.+|+|+++.......+. .. ..++..+ .+.
T Consensus 105 ~~~al~~~~~~l~~~----~-~~gd~Vlv~~p~~~~~~~~~~~~g~-~~------------~~~~~~~~~~~~------- 159 (401)
T 7aat_A 105 GTGSLRVGANFLQRF----F-KFSRDVYLPKPSWGNHTPIFRDAGL-QL------------QAYRYYDPKTCS------- 159 (401)
T ss_dssp HHHHHHHHHHHHHHH----C-TTCCEEEEEESCCTTHHHHHHHTTC-EE------------EEEECEETTTTE-------
T ss_pred chHHHHHHHHHHHHh----c-cCCCEEEEcCCCchhHHHHHHHcCC-ee------------EeeeeeccccCc-------
Confidence 999999999876432 1 2247899999999887644433221 11 1111100 000
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc---ccc
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT---MFG 258 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~---~~~ 258 (447)
.+++++++.+.+.. +.++++++...++.+| ...+.+.+++|.++|++||+++|+||+|.+++..+. ...
T Consensus 160 ------~d~~~l~~~l~~~~-~~~~~v~i~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~ 231 (401)
T 7aat_A 160 ------LDFTGAMEDISKIP-EKSIILLHACAHNPTG-VDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWA 231 (401)
T ss_dssp ------ECHHHHHHHHTTSC-TTCEEEEESSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHH
T ss_pred ------cCHHHHHHHHHhCC-CCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHH
Confidence 01355666665433 3455666666666666 456888999999999999999999999998866442 111
Q ss_pred ccc-CCCCCCe---eeecccCCCcccceeEEEe---ChhH----HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH
Q 013204 259 CDK-YSIKPDL---VSFAKALSSAYMPIGAILV---SPEV----SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI 327 (447)
Q Consensus 259 ~~~-~~~~~d~---v~~sK~l~gg~~~~g~~~~---~~~~----~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~ 327 (447)
... .+..+++ .++||.++..++++|++++ +++. ...+.. .....+.+.+..++.++.+.++.
T Consensus 232 ~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~ 304 (401)
T 7aat_A 232 LRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKI-------LIRPMYSNPPMNGARIASLILNT 304 (401)
T ss_dssp HHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHH-------HHHHHHSSCCHHHHHHHHHHHHC
T ss_pred HHHHHhcCCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHH-------HHHhccCCCChHHHHHHHHHhCC
Confidence 111 1222333 3689999854489999886 5553 333321 11111233344555544444421
Q ss_pred -------Hh-hhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeee-EEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc
Q 013204 328 -------YK-ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH 398 (447)
Q Consensus 328 -------~~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (447)
.+ -++..++++++++++.+.|+++...+.+......+. +..+.+. ...+...+.++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ll~~~ 369 (401)
T 7aat_A 305 PELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK---------------PEQVERLTKEF 369 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC---------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCCC---------------HHHHHHHHHhC
Confidence 01 133456777777888888877521111111223333 3222221 22343444678
Q ss_pred CceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 399 GMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 399 Gi~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
||.+.+. +|++... .++++|++++++|++++
T Consensus 370 gi~v~~~---~Ris~~~-~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 370 SIYMTKD---GRISVAG-VASSNVGYLAHAIHQVT 400 (401)
T ss_dssp CEECCTT---CEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred CEeccCC---CeEEecc-CChhhHHHHHHHHHHHh
Confidence 9988743 6888653 55666999999998875
No 186
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.84 E-value=3.7e-19 Score=172.01 Aligned_cols=305 Identities=14% Similarity=0.130 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEE
Q 013204 52 PRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 131 (447)
Q Consensus 52 p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi 131 (447)
|++.+++.+.+.... ..+.+...++++.+++++ +.+++++++||++|++.|++.+. -.++++|+
T Consensus 16 ~~v~~a~~~~~~~~~------~~~~~~~~~l~~~la~~~---~~~~~~~~~sGt~al~~al~~~~-------~~~gd~Vi 79 (367)
T 3nyt_A 16 DKIDAGIQRVLRHGQ------YILGPEVTELEDRLADFV---GAKYCISCANGTDALQIVQMALG-------VGPGDEVI 79 (367)
T ss_dssp HHHHHHHHHHHHHCC------CSSCHHHHHHHHHHHHHH---TCSEEEEESCHHHHHHHHHHHTT-------CCTTCEEE
T ss_pred HHHHHHHHHHHhcCC------ccCChHHHHHHHHHHHHh---CCCcEEEeCCHHHHHHHHHHHhC-------CCCcCEEE
Confidence 455555555554432 125567889999999997 34589999999999999999762 13357899
Q ss_pred EEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc-ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEE
Q 013204 132 ARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY-WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIA 210 (447)
Q Consensus 132 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~ 210 (447)
+..+.|++........+..+. .++.... +. .+ ++++++.+. +++++|++
T Consensus 80 ~~~~~~~~~~~~~~~~G~~~~-------------~~~~~~~~~~-----~d--------~~~l~~~i~----~~~~~v~~ 129 (367)
T 3nyt_A 80 TPGFTYVATAETVALLGAKPV-------------YVDIDPRTYN-----LD--------PQLLEAAIT----PRTKAIIP 129 (367)
T ss_dssp EESSSCTHHHHHHHHTTCEEE-------------EECBCTTTCS-----BC--------GGGTGGGCC----TTEEEECC
T ss_pred ECCCccHHHHHHHHHcCCEEE-------------EEecCCccCC-----cC--------HHHHHHhcC----cCCcEEEe
Confidence 999999887655443322111 1111100 00 00 255555553 36777774
Q ss_pred ccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCeeeec----ccCCC-cccceeE
Q 013204 211 EPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDLVSFA----KALSS-AYMPIGA 284 (447)
Q Consensus 211 epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~v~~s----K~l~g-g~~~~g~ 284 (447)
+ +. .|...+ +++|.++|++||+++|+||+|+ |....|. ..+...|++++| |.+++ | . .|+
T Consensus 130 ~--~~-~G~~~~----~~~i~~la~~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~Sf~~~K~l~~~g-~-gg~ 195 (367)
T 3nyt_A 130 V--SL-YGQCAD----FDAINAIASKYGIPVIEDAAQSFGASYKGK-----RSCNLSTVACTSFFPSAPLGCYG-D-GGA 195 (367)
T ss_dssp B--CG-GGCCCC----HHHHHHHHHHTTCCBEEECTTTTTCEETTE-----ETTSSSSEEEEECCTTSSSCCSS-C-CEE
T ss_pred e--CC-ccChhh----HHHHHHHHHHcCCEEEEECccccCCeECCe-----eccCCCCEEEEECCCCCcCCCcC-c-eeE
Confidence 3 33 344444 9999999999999999999997 2222222 122223888876 99987 5 3 677
Q ss_pred EEe-ChhHHHHhhhccCCC-----CccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhcc-CCCce
Q 013204 285 ILV-SPEVSEVIHSQSNTL-----GSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS-DSPII 357 (447)
Q Consensus 285 ~~~-~~~~~~~~~~~~~~~-----~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~~ 357 (447)
++. ++++++.+....... .....+.++..+++.++++++.++.+ ++..++.+++.+++++.|+++. ..+..
T Consensus 196 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 273 (367)
T 3nyt_A 196 IFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFI 273 (367)
T ss_dssp EEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred EEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCC
Confidence 777 467777665321100 00112346777888888888877754 3456777888888888888761 11111
Q ss_pred ee-EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-------------------------CEEEE
Q 013204 358 GE-IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------------------------DNIMM 411 (447)
Q Consensus 358 ~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-------------------------~~iR~ 411 (447)
.. ......++.+.+. . ...+.+.|.++||.++... ..+|+
T Consensus 274 ~~~~~~~~~~~~~~~~--~------------~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 339 (367)
T 3nyt_A 274 EVNNISVYAQYTVRMD--N------------RESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSL 339 (367)
T ss_dssp CTTEECCCSSEEEECS--S------------HHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEE
T ss_pred CCCCceeeEEEEEEeC--C------------HHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEc
Confidence 00 0111111222222 1 4568889999999876321 35899
Q ss_pred ecCCCCCHHHHHHHHHHHHHH
Q 013204 412 SPPFIMSPEEVDELISKYGKA 432 (447)
Q Consensus 412 ~~~~~~t~e~i~~~~~~l~~~ 432 (447)
......|++||+++++.+++.
T Consensus 340 p~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 340 PMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp CCCTTCCHHHHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHHHHHHHH
Confidence 988899999999999998754
No 187
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.83 E-value=1.7e-19 Score=177.43 Aligned_cols=319 Identities=16% Similarity=0.118 Sum_probs=178.8
Q ss_pred CCHHHHHHHHHHHhc-CCcccc---c--CcCCChHHHHHH-HHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhc
Q 013204 50 SEPRLVAAATAQLNT-LPFYHS---F--WNRTTKPSLDLA-KELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL 122 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~-~~~~~~---~--~~~~~~~~~~l~-~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~ 122 (447)
.||+|++++.+++.+ ....+. . .....+...+++ +++++.+. .+.+.+ ++++|++|++.+++.+.
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~v-~~~sGs~a~~~a~~~~~------ 113 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG-ADYANV-QPHSGSQANFAVYTALL------ 113 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHT-CSEEEC-CCSSHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhC-CCCcee-EecCcHHHHHHHHHHhc------
Confidence 699999999998844 211111 0 011223444444 56666652 333333 46778999999998763
Q ss_pred CCCCcceEEEEcCCCccchh-hh-hcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh
Q 013204 123 GRPNKKKFIARQKSYHGSTL-IA-ASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 200 (447)
Q Consensus 123 ~~~~~~~vi~~~~~yhg~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 200 (447)
.+++.|++.++.|++... +. ....+.... ....+....+. .++++|++.+...
T Consensus 114 --~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~----------~~~~~~~~~~~-------------~d~~~l~~~i~~~ 168 (420)
T 3gbx_A 114 --QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYN----------IVPYGIDESGK-------------IDYDEMAKLAKEH 168 (420)
T ss_dssp --CTTCEEEEEEEC------------CHHHHSE----------EEEEEECTTCS-------------CCHHHHHHHHHHH
T ss_pred --CCCCEEEecchhhcceeccchhhhhccccee----------EEeccCCccCC-------------cCHHHHHHHHHhc
Confidence 345778887777755321 11 111110000 00001100000 1147788888642
Q ss_pred CCCcEEEEEEc-cccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCeee--ecccCC
Q 013204 201 GPETIAAFIAE-PVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDLVS--FAKALS 276 (447)
Q Consensus 201 ~~~~~a~vi~e-pv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~v~--~sK~l~ 276 (447)
++++|+++ |.++ ...+ +++|+++|++||+++|+||+|. |+.+.|.... ... .+|+++ +||+++
T Consensus 169 ---~~~~v~~~~~~~~---~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~--~~~-~~di~~~s~sK~~~ 235 (420)
T 3gbx_A 169 ---KPKMIIGGFSAYS---GVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPN--PVP-HAHVVTTTTHKTLA 235 (420)
T ss_dssp ---CCSEEEECCTTCC---SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCC--STT-TSSEEEEESSGGGC
T ss_pred ---CCeEEEEecCccC---CccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCc--ccc-cCCEEEeecccCCC
Confidence 24566664 4443 3443 9999999999999999999975 4433332111 111 278887 669997
Q ss_pred CcccceeEEEeCh---hHHHHhhhccCCCCccCcCCCC-CCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHh
Q 013204 277 SAYMPIGAILVSP---EVSEVIHSQSNTLGSFSHGFTY-SGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVK 349 (447)
Q Consensus 277 gg~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~ 349 (447)
| .+.|++++++ ++++.+... ...+++ ..+...++++.+++..... +++.+++.++.+++++.|+
T Consensus 236 g--~~gg~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 306 (420)
T 3gbx_A 236 G--PRGGLILAKGGDEELYKKLNSA-------VFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFL 306 (420)
T ss_dssp S--CSCEEEEESSCCHHHHHHHHHH-------HC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CCceEEEEcCCcHHHHHHhhhh-------cCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 5 4568899987 777776531 111122 2233333333334433211 3456778888888888887
Q ss_pred hccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe-------e----CCEEEEecCCC--
Q 013204 350 AFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV-------S----GDNIMMSPPFI-- 416 (447)
Q Consensus 350 ~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~-------~----g~~iR~~~~~~-- 416 (447)
+. +..++. -...+.++.+.+..... ....+.+.|.++||++.+ + .+.+|++++..
T Consensus 307 ~~-g~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~ 374 (420)
T 3gbx_A 307 NR-GYKVVS-GGTENHLFLLDLVDKNL----------TGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTR 374 (420)
T ss_dssp HT-TCEEGG-GSCSSSEEEEECGGGTC----------CHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHH
T ss_pred hc-CCeecc-CCCCCeEEEEEcCCCCC----------CHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcc
Confidence 64 221111 01235566666653221 144577788889999987 2 14599998755
Q ss_pred --CCHHHHHHHHHHHHHHHHH
Q 013204 417 --MSPEEVDELISKYGKALKA 435 (447)
Q Consensus 417 --~t~e~i~~~~~~l~~~l~~ 435 (447)
.++++|++++++|++++++
T Consensus 375 ~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 375 RGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp TTCCHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHhC
Confidence 5689999999999998854
No 188
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.83 E-value=1.9e-19 Score=176.30 Aligned_cols=239 Identities=13% Similarity=0.085 Sum_probs=152.8
Q ss_pred cCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhc---ccC
Q 013204 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAAS---LSG 149 (447)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~---~~~ 149 (447)
....+...++++++++++ +.+++++++||++|++.+++.+. ..+++||+.++.||+....... ..|
T Consensus 77 r~~~p~~~~l~~~la~~~---g~~~~~~~~sG~~Ai~~al~~l~--------~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g 145 (414)
T 3ndn_A 77 RYGNPTVSVFEERLRLIE---GAPAAFATASGMAAVFTSLGALL--------GAGDRLVAARSLFGSCFVVCSEILPRWG 145 (414)
T ss_dssp TTCCHHHHHHHHHHHHHH---TCSEEEEESSHHHHHHHHHHTTC--------CTTCEEEEESCCCHHHHHHHHTHHHHTT
T ss_pred CCCChHHHHHHHHHHHHH---CCCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCccchHHHHHHHHHHHcC
Confidence 346778889999999986 34689999999999999998653 3357899999999986433211 011
Q ss_pred CccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHH
Q 013204 150 LPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEK 229 (447)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~ 229 (447)
.. +..++.. +++++++.+. +++++|++|++++.+|.+.+ +++
T Consensus 146 ~~------------~~~v~~~------------------d~~~l~~ai~----~~t~~v~le~p~NptG~~~~----l~~ 187 (414)
T 3ndn_A 146 VQ------------TVFVDGD------------------DLSQWERALS----VPTQAVFFETPSNPMQSLVD----IAA 187 (414)
T ss_dssp CE------------EEEECTT------------------CHHHHHHHTS----SCCSEEEEESSCTTTCCCCC----HHH
T ss_pred cE------------EEEeCCC------------------CHHHHHHhcC----CCCeEEEEECCCCCCCcccc----HHH
Confidence 11 1222221 1367777664 35678888999888887766 999
Q ss_pred HHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeecccCCCcc-cceeEEEeChhHHH-HhhhccCCCCccCc
Q 013204 230 VQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAY-MPIGAILVSPEVSE-VIHSQSNTLGSFSH 307 (447)
Q Consensus 230 l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK~l~gg~-~~~g~~~~~~~~~~-~~~~~~~~~~~~~~ 307 (447)
|+++|++||+++|+||+|+ .+.. +....++....+.+++|.+++++ +++|+++++++.+. .+.... ...
T Consensus 188 i~~la~~~g~~livDe~~~-~~~~---~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~-----~~~ 258 (414)
T 3ndn_A 188 VTELAHAAGAKVVLDNVFA-TPLL---QQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLM-----RHT 258 (414)
T ss_dssp HHHHHHHTTCEEEEECTTT-HHHH---CCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHH-----HHH
T ss_pred HHHHHHHcCCEEEEECCCc-cccc---CCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHH-----HHc
Confidence 9999999999999999987 2211 11123343333335789998844 68899999988665 443210 011
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CCce----------eeEeeeeeEEEEEee
Q 013204 308 GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SPII----------GEIRGTGLILGTEFA 372 (447)
Q Consensus 308 ~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~~----------~~~~~~g~~~~i~~~ 372 (447)
....++..++.++..++.+. ...++..++.+++.+.|++.+. +|.+ ...+|.|.++++.+.
T Consensus 259 --g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~ 334 (414)
T 3ndn_A 259 --GPAMSAFNAWVLLKGLETLA--IRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALD 334 (414)
T ss_dssp --CCCCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEEC
T ss_pred --CCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEc
Confidence 12236666665555555332 2345555666667666665411 1110 112456889999986
Q ss_pred c
Q 013204 373 D 373 (447)
Q Consensus 373 ~ 373 (447)
.
T Consensus 335 ~ 335 (414)
T 3ndn_A 335 C 335 (414)
T ss_dssp S
T ss_pred C
Confidence 4
No 189
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.83 E-value=1.2e-19 Score=175.92 Aligned_cols=323 Identities=14% Similarity=0.080 Sum_probs=186.3
Q ss_pred CCC-EEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHH
Q 013204 31 NGK-KYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEAND 109 (447)
Q Consensus 31 dg~-~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~ 109 (447)
.|+ .++|+..+.+.. .-+|++++++. .. ..+.....++++.+++.+...+.+++++++||++|+.
T Consensus 25 ~g~~~v~~~~~~~~~~---~~~~~v~~a~~----~~-------~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~ 90 (374)
T 2aeu_A 25 KGRDALYDLSGLSGGF---LIDEKDKALLN----TY-------IGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAIL 90 (374)
T ss_dssp TCGGGCEECSSCCCCC---CCCHHHHHHHT----ST-------THHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred cCccceeeecccCCCC---CCCHHHHHHHH----Hh-------cCchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHH
Confidence 354 466876542211 25678887775 21 1122234566666666653212378999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhh--hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLI--AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
.+++.+ + +++|++.++.||++... .....|... ..+ .+
T Consensus 91 ~~~~~~---------~-gd~Vl~~~~~y~~~~~~~~~~~~~g~~~------------~~v--~d---------------- 130 (374)
T 2aeu_A 91 ATILAL---------K-PKKVIHYLPELPGHPSIERSCKIVNAKY------------FES--DK---------------- 130 (374)
T ss_dssp HHHHHH---------C-CSEEEEECSSSSCCTHHHHHHHHTTCEE------------EEE--SC----------------
T ss_pred HHHHhC---------C-CCEEEEecCCCCccHHHHHHHHHcCcEE------------EEe--CC----------------
Confidence 999865 2 36899999999986421 111122111 011 00
Q ss_pred HHHHHHHHHHHhhCCCcEEE-EEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCC
Q 013204 188 RLANNLEDLILKEGPETIAA-FIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKP 266 (447)
Q Consensus 188 ~~~~~le~~l~~~~~~~~a~-vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~ 266 (447)
++++++. . +++++ |+++++++.+|. +...+++|.++|++||+++|+||+|..+ ..+...........+
T Consensus 131 --~~~l~~~-~----~~~~~~v~~~~p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~ 199 (374)
T 2aeu_A 131 --VGEILNK-I----DKDTLVIITGSTMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGAR-VRLLFNQPPALKLGA 199 (374)
T ss_dssp --HHHHHTT-C----CTTEEEEEECBCTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHH-HHHHTTCCCHHHHTC
T ss_pred --HHHHHhc-C----CCccEEEEEccCCCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccc-cccccccCCccccCC
Confidence 3666654 2 34567 888888777773 4566999999999999999999998643 211110000111246
Q ss_pred Ceee--ecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 013204 267 DLVS--FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKF 344 (447)
Q Consensus 267 d~v~--~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l 344 (447)
|+++ +||.++| +++|++++++++++.+... ......+.+++.++++.++++.+.. +..++..++.+.+
T Consensus 200 di~~~S~sK~l~g--~~~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~ 269 (374)
T 2aeu_A 200 DLVVTSTDKLMEG--PRGGLLAGKKELVDKIYIE-------GTKFGLEAQPPLLAGIYRALKNFNL-ERIRKAFERAKNF 269 (374)
T ss_dssp SEEEEETTSSSSS--CSCEEEEEEHHHHHHHHHH-------HHTTTCBCCHHHHHHHHHHHHHCCH-HHHHHHHHHHHHC
T ss_pred cEEEecCcccccC--cceEEEEECHHHHHHHHHh-------hccccCCCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHH
Confidence 7774 7899875 6999999999998887642 1112335678888888888876432 1223333333333
Q ss_pred ----HHhHhh-ccCC----CceeeEeeeeeEEEEE-eecCCCCCCCCCCCcchHHHHH-HHHHHcCceEEeeC------C
Q 013204 345 ----QDGVKA-FSDS----PIIGEIRGTGLILGTE-FADNKSPNEPFPPEWGIGAYFG-AQCEKHGMLVRVSG------D 407 (447)
Q Consensus 345 ----~~~L~~-l~~~----~~~~~~~~~g~~~~i~-~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gi~~~~~g------~ 407 (447)
++.|.+ +... ++.....+.|.++... +..... ......+. +.+.++||++.++. +
T Consensus 270 ~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~ 341 (374)
T 2aeu_A 270 DLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTIN--------IKKLIEIGFNLLKNYGIITITVAGMPGASK 341 (374)
T ss_dssp CCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHH--------HHHHHHHHHHHHHHHCEECSTTSSSCSSCC
T ss_pred HHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeeccccccc--------ccchHHHHHHHHHhCCEEEecCCCCCCCCC
Confidence 344432 2221 1222234555554332 111000 00011144 34457899987642 3
Q ss_pred EEEEecCC-CCCHHHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPF-IMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 408 ~iR~~~~~-~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.+||+++. ..++++++++.+.|+++++++
T Consensus 342 ~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~ 371 (374)
T 2aeu_A 342 SLRIDLTSRDAERIDDNYIIKAIVESIKMA 371 (374)
T ss_dssp SEEEETTSGGGGGSCHHHHHHHHHHHHHHH
T ss_pred eEEEEcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 69999653 223334788888888777665
No 190
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.83 E-value=2.5e-18 Score=169.21 Aligned_cols=324 Identities=12% Similarity=0.108 Sum_probs=193.9
Q ss_pred CCHHHHHHHHHHHhcCCcc-cccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 013204 50 SEPRLVAAATAQLNTLPFY-HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~ 128 (447)
-+|++++++.+.+++.... +....+..+...++++.+++++ +.+++++++||++|++.+++.+. . ..++
T Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~---g~~~~i~~~~gt~al~~~~~~~~------~-~~gd 83 (418)
T 2c81_A 14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFN---GVPYCVPTTSGSTALMLALEALG------I-GEGD 83 (418)
T ss_dssp CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHH---TCSEEEEESCHHHHHHHHHHHTT------C-CTTC
T ss_pred CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHh---CCCcEEEeCCHHHHHHHHHHHcC------C-CCcC
Confidence 3689999999998764322 2222334556888999999887 33478899999999999999762 0 2347
Q ss_pred eEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEE
Q 013204 129 KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAA 207 (447)
Q Consensus 129 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~ 207 (447)
+|++..++|++........ |... ..++... .+. .+++++++.+. +++++
T Consensus 84 ~Vl~~~~~~~~~~~~~~~~-g~~~------------~~~~~~~~~~~-------------~d~~~l~~~i~----~~~~~ 133 (418)
T 2c81_A 84 EVIVPSLTWIATATAVLNV-NALP------------VFVDVEADTYC-------------IDPQLIKSAIT----DKTKA 133 (418)
T ss_dssp EEEEESSSCTHHHHHHHHT-TCEE------------EEECBCTTTCS-------------BCHHHHGGGCC----TTEEE
T ss_pred EEEECCCccHhHHHHHHHc-CCEE------------EEEecCCCCCC-------------cCHHHHHHhhC----CCCeE
Confidence 8999999999886554432 2211 1111110 000 01366665553 35667
Q ss_pred EEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCC-ccccccccccCCCCCCee--ee--cccCCCcccce
Q 013204 208 FIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG-RLGTMFGCDKYSIKPDLV--SF--AKALSSAYMPI 282 (447)
Q Consensus 208 vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g-~~g~~~~~~~~~~~~d~v--~~--sK~l~gg~~~~ 282 (447)
|++++ ..|...+ +++|.++|++||+++|+||+|+.+. ..+.. .+..+|++ +| +|.+++ + ++
T Consensus 134 v~~~~---~~G~~~~----~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~-----~~~~~~~~~~s~s~~K~~~~-g-~~ 199 (418)
T 2c81_A 134 IIPVH---LFGSMAN----MDEINEIAQEHNLFVIEDCAQSHGSVWNNQR-----AGTIGDIGAFSCQQGKVLTA-G-EG 199 (418)
T ss_dssp ECCBC---CTTCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCS-S-SC
T ss_pred EEEeC---CcCCccc----HHHHHHHHHHCCCEEEEECcccccCccCCEe-----cccccceEEEeccCCcccCC-C-Ce
Confidence 77654 3455544 9999999999999999999998654 22221 11123554 45 899987 3 88
Q ss_pred eEEEeC-hhHHHHhhhccCCCC-----------ccCc--------CCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 013204 283 GAILVS-PEVSEVIHSQSNTLG-----------SFSH--------GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAP 342 (447)
Q Consensus 283 g~~~~~-~~~~~~~~~~~~~~~-----------~~~~--------~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~ 342 (447)
|+++.+ +++++.+........ .+.+ +.....+++.++.+...++.+ ++..++.+++.+
T Consensus 200 g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~ 277 (418)
T 2c81_A 200 GIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL--DDKNAIREKNAM 277 (418)
T ss_dssp EEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 999985 777766643211100 0110 011113344433333333322 345566666777
Q ss_pred HHHHhHhhccCCCceeeEee--eee--EEEEEeecCCCCCCCCCCCcchHHHHHHHHHHc-Cce---EEee---------
Q 013204 343 KFQDGVKAFSDSPIIGEIRG--TGL--ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKH-GML---VRVS--------- 405 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~--~g~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~---~~~~--------- 405 (447)
++++.|+++++..+.....+ ... ++.+.+.+..... .....+.+.|.++ ||. +.++
T Consensus 278 ~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~ 350 (418)
T 2c81_A 278 FLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGG-------LNADQFCEILREKLNMGTFYLHPPYLPVHKNPL 350 (418)
T ss_dssp HHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTTT-------CCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTT
T ss_pred HHHHHhccCCCcccCCCCCCCcccccEEEEEEEccccccc-------cCHHHHHHHHHHcCCCCcccccccccccccCch
Confidence 77777766522111111111 111 3335554310000 0145688899998 999 7642
Q ss_pred ----------------------C----------CEEEEecCCCC-CHHHHHHHHHHHHHHHHHH
Q 013204 406 ----------------------G----------DNIMMSPPFIM-SPEEVDELISKYGKALKAT 436 (447)
Q Consensus 406 ----------------------g----------~~iR~~~~~~~-t~e~i~~~~~~l~~~l~~~ 436 (447)
+ +.+|++++..+ |++||++++++|+++++++
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 351 FCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp CCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred hcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 1 36999999999 9999999999999987653
No 191
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.82 E-value=3.5e-18 Score=166.81 Aligned_cols=326 Identities=13% Similarity=0.116 Sum_probs=196.3
Q ss_pred CHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceE
Q 013204 51 EPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKF 130 (447)
Q Consensus 51 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~v 130 (447)
+|++.+++.+.+... ++ . ...+...++++.+++++ +.+++++++||++|++.+++.+. ..++++|
T Consensus 11 ~~~v~~a~~~~~~~~-~~-~---~~g~~~~~l~~~la~~~---~~~~v~~~~ggt~al~~~~~~l~-------~~~gd~V 75 (394)
T 1o69_A 11 GGNELKYIEEVFKSN-YI-A---PLGEFVNRFEQSVKDYS---KSENALALNSATAALHLALRVAG-------VKQDDIV 75 (394)
T ss_dssp -CCHHHHHHHHHHHT-TT-S---CTTHHHHHHHHHHHHHH---CCSEEEEESCHHHHHHHHHHHTT-------CCTTCEE
T ss_pred CHHHHHHHHHHHHcC-Cc-c---CCChHHHHHHHHHHHHh---CCCcEEEeCCHHHHHHHHHHHcC-------CCCCCEE
Confidence 477888888888653 11 1 01245788999999997 34789999999999999999761 1335789
Q ss_pred EEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEE
Q 013204 131 IARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIA 210 (447)
Q Consensus 131 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~ 210 (447)
++..+.|++........ |... ..++..+.+. .+++++++.+.... +++++|++
T Consensus 76 l~~~~~~~~~~~~~~~~-g~~~------------~~v~~~~~~~-------------~d~~~l~~~i~~~~-~~~~~v~~ 128 (394)
T 1o69_A 76 LASSFTFIASVAPICYL-KAKP------------VFIDCDETYN-------------IDVDLLKLAIKECE-KKPKALIL 128 (394)
T ss_dssp EEESSSCGGGTHHHHHT-TCEE------------EEECBCTTSS-------------BCHHHHHHHHHHCS-SCCCEEEE
T ss_pred EECCCccHHHHHHHHHc-CCEE------------EEEEeCCCCC-------------cCHHHHHHHHhccc-CCceEEEE
Confidence 99999999986554432 2111 1111111110 01477888776421 24567777
Q ss_pred ccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCeeee--cccCCCcccceeEEEe
Q 013204 211 EPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDLVSF--AKALSSAYMPIGAILV 287 (447)
Q Consensus 211 epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~~~g~~~~ 287 (447)
++. .|...+ +++|.++|++||+++|+||+|+ |+...|.... . + ...|+.++ +|.+++ .++|++++
T Consensus 129 ~~~---~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~-~-~-~~~~~~s~s~~K~l~~--~~~G~~~~ 196 (394)
T 1o69_A 129 THL---YGNAAK----MDEIVEICKENDIVLIEDAAEALGSFYKNKALG-T-F-GEFGVYSYNGNKIITT--SGGGMLIG 196 (394)
T ss_dssp ECG---GGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEETT-S-S-SSEEEEECCTTSSSCC--SSCEEEEE
T ss_pred ECC---CCChhh----HHHHHHHHHHcCCEEEEECcCcccceeCCcccc-c-c-cCcEEEEEeCCccCCC--CCceEEEE
Confidence 763 344443 9999999999999999999998 6544442211 1 1 13677788 477765 47999999
Q ss_pred C-hhHHHHhhhccCCCC----cc---CcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceee
Q 013204 288 S-PEVSEVIHSQSNTLG----SF---SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGE 359 (447)
Q Consensus 288 ~-~~~~~~~~~~~~~~~----~~---~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~ 359 (447)
+ +++++.+........ .+ ..+..+..+++.++.+++.++.++ +..++.+++.+++++.|+++ ..+...
T Consensus 197 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~--~~~~~~ 272 (394)
T 1o69_A 197 KNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLE--QRVLKKREIYEWYKEFLGEY--FSFLDE 272 (394)
T ss_dssp SCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTT--EECCCC
T ss_pred CCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccc--ccccCC
Confidence 5 788877754211100 00 011122245666666665555443 35677788888888888764 111111
Q ss_pred Ee-eeee--EEEEEeecCC---CC-----CCCCCCC--cchHHHHHHHHHHcCceEEeeC--------------------
Q 013204 360 IR-GTGL--ILGTEFADNK---SP-----NEPFPPE--WGIGAYFGAQCEKHGMLVRVSG-------------------- 406 (447)
Q Consensus 360 ~~-~~g~--~~~i~~~~~~---~~-----~~~~~~~--~~~~~~~~~~l~~~Gi~~~~~g-------------------- 406 (447)
.. ..+. ++.+.+.... .. ...+... ......+.+.|.++||.++++.
T Consensus 273 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~ 352 (394)
T 1o69_A 273 LENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNS 352 (394)
T ss_dssp CTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHH
T ss_pred CCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHH
Confidence 10 0112 2344544210 00 0000000 0024568889999999987541
Q ss_pred -----CEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 407 -----DNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 407 -----~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
..+++.....+|++|+++++++|+++++
T Consensus 353 ~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~ 385 (394)
T 1o69_A 353 ELFFQKGICLPSGTAMSKDDVYEISKLILKSIK 385 (394)
T ss_dssp HHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence 2355555677999999999999998764
No 192
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.81 E-value=1.1e-17 Score=165.43 Aligned_cols=333 Identities=14% Similarity=0.095 Sum_probs=197.1
Q ss_pred CCCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHH
Q 013204 31 NGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDT 110 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~ 110 (447)
+|+.+|.+... .-+|++.+++.+++....++ +.+...++++.+++++. .+++++++||++|++.
T Consensus 29 ~~~~~i~~~~~-------~~~~~~~~a~~~~~~~~~~~------~~~~~~~l~~~la~~~g---~~~~i~~~sGt~a~~~ 92 (437)
T 3bb8_A 29 AGKSVVPPSGK-------VIGTKELQLMVEASLDGWLT------TGRFNDAFEKKLGEYLG---VPYVLTTTSGSSANLL 92 (437)
T ss_dssp TTTSCBCSCCC-------CCCHHHHHHHHHHHHHCCCB------SCHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHH
T ss_pred CCCccccCCCC-------CCCHHHHHHHHHHHHcCCcC------CChHHHHHHHHHHHHHC---CCcEEEeCCHHHHHHH
Confidence 45556665322 13589999999988764322 45678899999999973 3478999999999999
Q ss_pred HHHHHHHHHHhc-CCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhHHHHH
Q 013204 111 QVKLVWYYNNAL-GRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEEYSTR 188 (447)
Q Consensus 111 Al~~~~~~~~~~-~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 188 (447)
+++.+..+...+ ....+++|++..+.|++....... .|... ..++... .+. .
T Consensus 93 al~~l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~~~-~g~~~------------~~v~~~~~~~~-------------~ 146 (437)
T 3bb8_A 93 ALTALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQ-NGLIP------------VFVDVDIPTYN-------------V 146 (437)
T ss_dssp HHHHTTCGGGGGGSCCTTCEEEECSSSCHHHHHHHHH-TTCEE------------EECCEETTTTE-------------E
T ss_pred HHHHhhhcccccccCCCcCEEEECCCCcHHHHHHHHH-cCCEE------------EEEeccCccCC-------------c
Confidence 998762110000 012347899999999887655443 22211 1111100 000 0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCe
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDL 268 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~ 268 (447)
+++++++.+. +++++|++... .|...+ +++|.++|++||+++|+||+|+ +|... ....++..+|+
T Consensus 147 d~~~l~~~i~----~~~~~v~~~~~---~g~~~~----~~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~~~~d~ 211 (437)
T 3bb8_A 147 NASLIEAAVS----DKTKAIMIAHT---LGNLFD----LAEVRRVADKYNLWLIEDCCDA-LGSTY---DGKMAGTFGDI 211 (437)
T ss_dssp CGGGHHHHCC----TTEEEEEEECG---GGCCCC----HHHHHHHHHHHTCEEEEECTTC-TTCEE---TTEETTSSSSE
T ss_pred CHHHHHHhcC----CCCeEEEEeCC---CCChhc----HHHHHHHHHHcCCEEEEECccc-cCceE---CCeecccccCE
Confidence 0256666553 24566666431 233333 9999999999999999999998 22221 11233444788
Q ss_pred eeec----ccCCCcccceeEEEeChhHHH-Hhhh---ccCC----------------------CCcc-------CcCCCC
Q 013204 269 VSFA----KALSSAYMPIGAILVSPEVSE-VIHS---QSNT----------------------LGSF-------SHGFTY 311 (447)
Q Consensus 269 v~~s----K~l~gg~~~~g~~~~~~~~~~-~~~~---~~~~----------------------~~~~-------~~~~t~ 311 (447)
+++| |++++| .+|+++++++.+. .+.. .... ...+ ..+.++
T Consensus 212 ~~~s~~~~k~l~~g--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 289 (437)
T 3bb8_A 212 GTVSFYPAKHITMG--EGGAVFTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNL 289 (437)
T ss_dssp EEEECSTTSSSCCS--SCEEEEESCHHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBC
T ss_pred EEEECcCCcCCCCC--CeEEEEeCCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCccc
Confidence 6543 677653 6788888865433 3221 0000 0000 011223
Q ss_pred CCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceee-----EeeeeeEEEEEeecCCCCCCCCCCCcc
Q 013204 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGE-----IRGTGLILGTEFADNKSPNEPFPPEWG 386 (447)
Q Consensus 312 ~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~-----~~~~g~~~~i~~~~~~~~~~~~~~~~~ 386 (447)
..+++.++++++.|+.+ ++..++.+++.+++++.|+++.+...... ..+...+ .+.+..+...
T Consensus 290 ~~~~~~aa~~l~~l~~~--~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------- 357 (437)
T 3bb8_A 290 KITDMQAACGLAQLERI--EEFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGF-PITLKEDSGV--------- 357 (437)
T ss_dssp CCBHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSE-EEEECGGGSS---------
T ss_pred CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCceeeEEE-EEEECCcCcC---------
Confidence 34678888888887654 34556667888888888887632111110 1111111 2223321000
Q ss_pred hHHHHHHHHHHcCceEEeeC-----------------------------CEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 387 IGAYFGAQCEKHGMLVRVSG-----------------------------DNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 387 ~~~~~~~~l~~~Gi~~~~~g-----------------------------~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
....+.+.|.++||.++.+. +.+|++.+..+|++||++++++|+++++
T Consensus 358 ~~~~l~~~L~~~GI~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 358 SRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp CHHHHHHHHHHTTBCCBCCTTSSGGGSGGGSSCCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHCCCceeccCCcccccCchhhccCccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 14568899999999887431 1389999999999999999999988753
No 193
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.81 E-value=1.9e-17 Score=161.33 Aligned_cols=315 Identities=16% Similarity=0.155 Sum_probs=194.1
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcce
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~ 129 (447)
-+|++.+++.+++++..+ .+.+...++++.+++++. .+++++++||++|++.+++.++.. ...+..++++
T Consensus 13 ~~~~~~~a~~~~~~~~~~------~~~~~~~~l~~~la~~~~---~~~~i~~~sGt~a~~~al~~~~~~-~~~~~~~g~~ 82 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDSKMF------TMGEYVKQYETQFAKTFG---SKYAVMVSSGSTANLLMIAALFFT-KKPRLKKGDE 82 (390)
T ss_dssp CCHHHHHHHHHHHHHTCC------SSCHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHTTSS-SSCSCCTTCE
T ss_pred CCHHHHHHHHHHHHcCCC------CCChHHHHHHHHHHHHHC---CCcEEEECCHHHHHHHHHHHHHhh-hhcCCCCcCE
Confidence 478999999998876422 246678899999999973 347899999999999999876210 0001133478
Q ss_pred EEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc-ccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEE
Q 013204 130 FIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY-WRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAF 208 (447)
Q Consensus 130 vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~v 208 (447)
|++..+.||+....... .|... ..++.... +. .++++|++.+. +++++|
T Consensus 83 Vi~~~~~~~~~~~~~~~-~g~~~------------~~~~~~~~~~~-------------~d~~~l~~~i~----~~~~~v 132 (390)
T 3b8x_A 83 IIVPAVSWSTTYYPLQQ-YGLRV------------KFVDIDINTLN-------------IDIESLKEAVT----DSTKAI 132 (390)
T ss_dssp EEEESSSCHHHHHHHHH-TTCEE------------EEECBCTTTCS-------------BCHHHHHHHCC----TTEEEE
T ss_pred EEECCCCcHHHHHHHHH-cCCEE------------EEEecCccccC-------------cCHHHHHHHhC----cCCeEE
Confidence 99999999988655443 22211 11111100 00 01367777664 245666
Q ss_pred EEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeecc----cCCCcccceeE
Q 013204 209 IAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAK----ALSSAYMPIGA 284 (447)
Q Consensus 209 i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~sK----~l~gg~~~~g~ 284 (447)
++.+. .|...+ +++|.++|++||+++|+||+|+ +|... ....++..+|+.++|| .+++| ..|+
T Consensus 133 ~~~~~---~g~~~~----~~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~g~~~~~~~~s~~~~k~~~~g--~gG~ 199 (390)
T 3b8x_A 133 LTVNL---LGNPNN----FDEINKIIGGRDIILLEDNCES-MGATF---NNKCAGTFGLMGTFSSFYSNHIATM--EGGC 199 (390)
T ss_dssp EEECG---GGCCCC----HHHHHHHHTTSCCEEEEECTTC-TTCEE---TTEETTSSSSEEEEECCTTSSSCSS--SCEE
T ss_pred EEECC---ccChhh----HHHHHHHHHHcCCEEEEECcCc-ccCEE---CCcccccccceEEEEccCCCCCccC--CceE
Confidence 66432 233333 9999999999999999999998 32221 1234566788888775 44332 3478
Q ss_pred EEeCh-hHHHHhhhccCCC--C-------------------cc---CcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHH
Q 013204 285 ILVSP-EVSEVIHSQSNTL--G-------------------SF---SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNK 339 (447)
Q Consensus 285 ~~~~~-~~~~~~~~~~~~~--~-------------------~~---~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~ 339 (447)
+++++ ++.+.+....... + .+ ..+.++..+++.++++++.++.++ +..++.++
T Consensus 200 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~ 277 (390)
T 3b8x_A 200 IVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP--RFISVRRK 277 (390)
T ss_dssp EEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 88775 6655443211000 0 00 012233467888888877776553 45677788
Q ss_pred HHHHHHHhHhhccCCCceeeEeeeee--EEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------C----
Q 013204 340 IAPKFQDGVKAFSDSPIIGEIRGTGL--ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------G---- 406 (447)
Q Consensus 340 ~~~~l~~~L~~l~~~~~~~~~~~~g~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------g---- 406 (447)
+.+++++.|+++++..+... ..... .+.+.+...... ....+.+.|.++||.+++. .
T Consensus 278 ~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~---------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~ 347 (390)
T 3b8x_A 278 NAEYFLDKFKDHPYLDVQQE-TGESSWFGFSFIIKKDSGV---------IRKQLVENLNSAGIECRPIVTGNFLKNTDVL 347 (390)
T ss_dssp HHHHHHHHHTTCSSEEECCC-CSBCCCCEEEEEECTTSCC---------CHHHHHHHHHHTTBCCBCSTTSSGGGCHHHH
T ss_pred HHHHHHHHhcCCCCcccCCC-CCCcccEEEEEEecCcCcc---------cHHHHHHHHHHCCCCeeeecCCchhhcchhh
Confidence 88888888876522111111 01122 233444321000 1456888899999987741 0
Q ss_pred -------------------CEEEEecCCCCCHHHHHHHHHHH
Q 013204 407 -------------------DNIMMSPPFIMSPEEVDELISKY 429 (447)
Q Consensus 407 -------------------~~iR~~~~~~~t~e~i~~~~~~l 429 (447)
+.+|++.+..+|++||+++++.|
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 348 KYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp TTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred hcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 14899999999999999999876
No 194
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.81 E-value=3.2e-17 Score=165.49 Aligned_cols=326 Identities=14% Similarity=0.075 Sum_probs=185.7
Q ss_pred HHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHH----HhcCCC--CcceEEEEcCCCccchhhhhcccCCcc
Q 013204 79 SLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYN----NALGRP--NKKKFIARQKSYHGSTLIAASLSGLPA 152 (447)
Q Consensus 79 ~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~----~~~~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~ 152 (447)
..++.+++++++. .+.+.++|++|||+||..|++.++.+. ...|.. ++..|++ ....|.+...+....+...
T Consensus 150 e~~~~~~la~l~g-~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~-s~~~h~s~~~~~~~~g~g~ 227 (515)
T 2jis_A 150 EEEVLRKLRALVG-WSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFT-SKECHYSIQKGAAFLGLGT 227 (515)
T ss_dssp HHHHHHHHHHHHT-CSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEE-ETTSCTHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHhC-CCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEE-CCCccHHHHHHHHHcCCCC
Confidence 4556677888774 335689999999999999999886432 111211 1124444 4455666544443322200
Q ss_pred ccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEEEccccCCCCCccCChhHHHHH
Q 013204 153 LHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKV 230 (447)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~~~l~~l 230 (447)
..+..++....++ . ++++|++.+... ....+++|+++..++..|.+.+ +++|
T Consensus 228 ---------~~v~~v~~~~~~~-----~--------d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I 281 (515)
T 2jis_A 228 ---------DSVRVVKADERGK-----M--------VPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAI 281 (515)
T ss_dssp ---------GGEEEECBCTTSC-----B--------CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHH
T ss_pred ---------CcEEEEecCCCCc-----C--------CHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHH
Confidence 0122233221111 0 137778777542 1225778888888777887776 9999
Q ss_pred HHHHHhcCCEEEEehhhcCCCccccccccccCCC-CCCeeee--cccCCCcccceeEEEeChh--HHHHhhhc-cCCC-C
Q 013204 231 QAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI-KPDLVSF--AKALSSAYMPIGAILVSPE--VSEVIHSQ-SNTL-G 303 (447)
Q Consensus 231 ~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~-~~d~v~~--sK~l~gg~~~~g~~~~~~~--~~~~~~~~-~~~~-~ 303 (447)
.++|++||+++|+|++|+++......+.....++ .+|++++ +|.++++ .++|+++.+++ +++..... .... +
T Consensus 282 ~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p-~g~G~l~~~~~~~~~~~~~~~~~~yl~~ 360 (515)
T 2jis_A 282 ADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAG-LQCSALLLQDTSNLLKRCHGSQASYLFQ 360 (515)
T ss_dssp HHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESCCSCHHHHHHCC-------
T ss_pred HHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCC-CCeeEEEEeChHHHHHHHhcCCchhccC
Confidence 9999999999999999987655433333334455 6899887 6998877 58999998876 65542110 0000 0
Q ss_pred c-c-----CcCCC------CCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEe
Q 013204 304 S-F-----SHGFT------YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEF 371 (447)
Q Consensus 304 ~-~-----~~~~t------~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~ 371 (447)
. . ....+ .....+.+.+++.++....-++..++..++++++.+.|+++++..++.. .....+.+.+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~--~~~~~v~f~~ 438 (515)
T 2jis_A 361 QDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVME--PEFVNVCFWF 438 (515)
T ss_dssp --CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSC--CSSSEEEEEE
T ss_pred CcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC--CCeeEEEEEE
Confidence 0 0 00000 0112344444444443222234567777788888888877633222221 1122233333
Q ss_pred ecCC--C--CCCCCCC-CcchHHHHHHHHHHcCceEEe----eC--CEEEEec-CCCCCHHHHHHHHHHHHHHHHH
Q 013204 372 ADNK--S--PNEPFPP-EWGIGAYFGAQCEKHGMLVRV----SG--DNIMMSP-PFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 372 ~~~~--~--~~~~~~~-~~~~~~~~~~~l~~~Gi~~~~----~g--~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.... . ....+.. .......+.+.+.+.|+++.. .+ +.+|+++ +..+|++||++++++|++++++
T Consensus 439 ~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 439 VPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp CCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred eCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 2110 0 0000000 000112366778889976532 12 4699999 8889999999999999887653
No 195
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.81 E-value=1.9e-18 Score=170.10 Aligned_cols=240 Identities=15% Similarity=0.086 Sum_probs=154.3
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh---cccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA---SLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~---~~~~~~ 151 (447)
..+...++++++++++. .+..++++||++|++.+++.+. .++++||+..+.||+...... ...|..
T Consensus 56 ~~~~~~~l~~~la~~~g---~~~~v~~~sGt~A~~~~l~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~ 124 (421)
T 2ctz_A 56 MNPTVDVLEKRLAALEG---GKAALATASGHAAQFLALTTLA--------QAGDNIVSTPNLYGGTFNQFKVTLKRLGIE 124 (421)
T ss_dssp BCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHC--------CTTCEEEECSCCCHHHHHHHHTHHHHTTCE
T ss_pred CChHHHHHHHHHHHHhC---CCceEEecCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHHHHHHcCCE
Confidence 45677899999999973 3367788889999999999763 345789999999998754431 112211
Q ss_pred cccCCCCCCCCcceec-CCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHH
Q 013204 152 ALHQKFDLPAPFVLHT-DCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKV 230 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l 230 (447)
+..+ +.. +++++++.+. +++++|+++++++.+|.+.+ +++|
T Consensus 125 ------------~~~~~~~~------------------d~~~l~~~i~----~~~~~v~~~~~~n~~G~~~~----l~~i 166 (421)
T 2ctz_A 125 ------------VRFTSREE------------------RPEEFLALTD----EKTRAWWVESIGNPALNIPD----LEAL 166 (421)
T ss_dssp ------------EEECCTTC------------------CHHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHH
T ss_pred ------------EEEECCCC------------------CHHHHHHhhc----cCCeEEEEECCCCCCCcccC----HHHH
Confidence 1112 211 1367777664 36789999999999998877 9999
Q ss_pred HHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccceeEEEeC---hhH----HHHhhhccCC
Q 013204 231 QAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPIGAILVS---PEV----SEVIHSQSNT 301 (447)
Q Consensus 231 ~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~g~~~~~---~~~----~~~~~~~~~~ 301 (447)
.++|++||+++|+||+|+++|..+..+ +..+|++ +++|.+++++.++|+++.. +++ .+.+......
T Consensus 167 ~~~a~~~g~~livD~~~~~~g~~~~~~-----~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g 241 (421)
T 2ctz_A 167 AQAAREKGVALIVDNTFGMGGYLLRPL-----AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPG 241 (421)
T ss_dssp HHHHHHHTCEEEEECGGGGGGTSCCGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGG
T ss_pred HHHHHHcCCEEEEECCcccccccCCcc-----ccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccch
Confidence 999999999999999995566544332 3458988 5789999855688877764 222 2222210000
Q ss_pred CCc-----------------c--CcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeE--
Q 013204 302 LGS-----------------F--SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI-- 360 (447)
Q Consensus 302 ~~~-----------------~--~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-- 360 (447)
... + ........+++.+++++..++.+. ...++..++.+++.+.|++. +.+..+
T Consensus 242 ~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~~---p~v~~v~~ 316 (421)
T 2ctz_A 242 YHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLS--LRAERHVENTLHLAHWLLEQ---PQVAWVNY 316 (421)
T ss_dssp GTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTC---TTEEEEEC
T ss_pred hhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHH--HHHHHHHHhHHHHHHHHHhC---CCeeEEEC
Confidence 000 0 000123557777777777666442 22344456777777777664 222222
Q ss_pred -----------------eeeeeEEEEEeec
Q 013204 361 -----------------RGTGLILGTEFAD 373 (447)
Q Consensus 361 -----------------~~~g~~~~i~~~~ 373 (447)
++.|.++.+.+..
T Consensus 317 p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~ 346 (421)
T 2ctz_A 317 PGLPHHPHHDRAQKYFKGKPGAVLTFGLKG 346 (421)
T ss_dssp TTSTTCTTHHHHHHHHTTCCCSEEEEEETT
T ss_pred CCCCCCCCHHHHHHhccCCCceEEEEEeCC
Confidence 4678888888864
No 196
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.80 E-value=1.4e-18 Score=169.65 Aligned_cols=356 Identities=10% Similarity=0.042 Sum_probs=192.9
Q ss_pred CCCEEEecCCccccccCCCC--CHHHHHHHHHHHhcCCc-ccccCcCCChHHHHHHHHHHHhcCc--C--CCCeEEEeCC
Q 013204 31 NGKKYLDSLAGLWCTALGGS--EPRLVAAATAQLNTLPF-YHSFWNRTTKPSLDLAKELLEMFTA--S--KMAKVFFTNS 103 (447)
Q Consensus 31 dg~~~lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~--~--~~~~v~~~~s 103 (447)
|++..+|+.-|..-..-|.. .|.|.+|....++.... .|. +.....+|.+.+.+++.. . +.....-+.+
T Consensus 42 d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~----p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~g 117 (420)
T 4h51_A 42 AKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYL----PISGYQPFIDEAVKIIYGNTVELENLVAVQTLS 117 (420)
T ss_dssp CCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCC----CTTCCHHHHHHHHHHHHC---CGGGEEEEEEEH
T ss_pred CCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCC----CcCChHHHHHHHHHHhcCCCccccccceeeecC
Confidence 44446787666444444532 36788887766654322 122 233344555555554311 1 2223445789
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChh
Q 013204 104 GSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 183 (447)
Q Consensus 104 GseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (447)
||.|...++.++... ...+.+.|++.+|+|..+.......++.+...... + +. +
T Consensus 118 gtga~~~a~~~l~~~----~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~-----------~-~~----------~ 171 (420)
T 4h51_A 118 GTGAVSLGAKLLTRV----FDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAY-----------Y-DP----------K 171 (420)
T ss_dssp HHHHHHHHHHHHTTT----SCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEEC-----------E-EG----------G
T ss_pred chHHHHHHHHHHHHh----cCCCCCEEEEecCCchhHHHHHHHcCCeEEEeecc-----------c-cc----------c
Confidence 999998888865321 11245789999999977755544444332211000 0 00 0
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc---ccccc
Q 013204 184 EYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT---MFGCD 260 (447)
Q Consensus 184 ~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~---~~~~~ 260 (447)
....+++.+.+.+....++.+.+++..|.|++| ..++.+.+++|.++|+++++++|+||+|.+|...+. .+...
T Consensus 172 -~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG--~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~ 248 (420)
T 4h51_A 172 -TVSLNFEGMKKDILAAPDGSVFILHQCAHNPTG--VDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAAR 248 (420)
T ss_dssp -GTEECHHHHHHHHHHSCSSCEEEEESSSCTTTC--CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHH
T ss_pred -ccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCC--CCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHH
Confidence 000012455555555444445444444555555 677999999999999999999999999999854332 11111
Q ss_pred c-CCCCCCee---eecccCCCcccceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH--H----h-
Q 013204 261 K-YSIKPDLV---SFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI--Y----K- 329 (447)
Q Consensus 261 ~-~~~~~d~v---~~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~--~----~- 329 (447)
. ....+.++ +|||.++..++|+|++++..+..+.......+...........++..++.++...+.. + +
T Consensus 249 ~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~ 328 (420)
T 4h51_A 249 LFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEA 328 (420)
T ss_dssp HHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHH
T ss_pred hHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHH
Confidence 1 11122232 6899887655999999876543332211000000011112223344455444444431 0 0
Q ss_pred -hhcHHHHHHHHHHHHHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeCC
Q 013204 330 -ERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGD 407 (447)
Q Consensus 330 -~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g~ 407 (447)
-+...++++++++.+.+.|+++........+ ...|.|..+.+ .....+.|.++||++.++|
T Consensus 329 ~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gl----------------s~e~v~~L~e~~Vy~~~~g- 391 (420)
T 4h51_A 329 ELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGL----------------SKAQCEYCQNHNIFITVSG- 391 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCC----------------CHHHHHHHHHTTEECCTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEecCc----------------CHHHHHHHHhCCEEEcCCC-
Confidence 1234456666777777777765111111111 22344432211 1224577889999887765
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013204 408 NIMMSPPFIMSPEEVDELISKYGKALKATEER 439 (447)
Q Consensus 408 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 439 (447)
||+.. ..+++.|+++.++|.++++++.++
T Consensus 392 --Ris~A-gl~~~ni~~~a~aI~~vvr~i~re 420 (420)
T 4h51_A 392 --RANMA-GLTHETALMLAQTINDAVRNVNRE 420 (420)
T ss_dssp --EEEGG-GCCHHHHHHHHHHHHHHHC-----
T ss_pred --EEEec-cCCHHHHHHHHHHHHHHHHHhhcC
Confidence 88843 469999999999999999887654
No 197
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.80 E-value=4.1e-17 Score=162.12 Aligned_cols=346 Identities=11% Similarity=0.012 Sum_probs=191.7
Q ss_pred CCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCC-----eEEEeCChhhHHHHHHHHHHHHHH---
Q 013204 49 GSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMA-----KVFFTNSGSEANDTQVKLVWYYNN--- 120 (447)
Q Consensus 49 ~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~v~~~~sGseA~~~Al~~~~~~~~--- 120 (447)
+.+|.+.+++.+++......+...........++.+++++++. .+.+ .+++++||++|+..++..++....
T Consensus 53 ~~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g-~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~ 131 (452)
T 2dgk_A 53 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWH-APAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRM 131 (452)
T ss_dssp CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTT-CCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhC-CCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 3578999998888764322211111122334556666777763 2332 489999999999999987754221
Q ss_pred -hcCCC-CcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhHHHHHHHHHHHHHH
Q 013204 121 -ALGRP-NKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEEYSTRLANNLEDLI 197 (447)
Q Consensus 121 -~~~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~le~~l 197 (447)
..|.+ .++.||+.+ +|.....+....|... ..++... .++ . ++++|++.+
T Consensus 132 ~~~G~~~~~~~vi~~~--~h~~~~~~~~~~G~~v------------~~v~~~~~~~~-----~--------d~~~l~~~i 184 (452)
T 2dgk_A 132 EAAGKPTDKPNLVCGP--VQICWHKFARYWDVEL------------REIPMRPGQLF-----M--------DPKRMIEAC 184 (452)
T ss_dssp HHTTCCCSCCEEEESS--CCHHHHHHHHHTTCEE------------EECCCBTTBCS-----C--------CHHHHHHHC
T ss_pred HhcCCCCCCcEEEECC--CcHHHHHHHHHcCceE------------EEEecCCCCCe-----E--------CHHHHHHHH
Confidence 12211 124666644 7766544443333221 1222211 111 0 137777766
Q ss_pred HhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhc------CCEEEEehhhcCCCc--cccccccccCCCCCCee
Q 013204 198 LKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKY------DILFIADEVICAFGR--LGTMFGCDKYSIKPDLV 269 (447)
Q Consensus 198 ~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~------g~~li~DEv~~g~g~--~g~~~~~~~~~~~~d~v 269 (447)
. +.+++|++...++..|.+.+ +++|.++|++| |+++++|++|.++.. .........--...|.+
T Consensus 185 ~----~~t~~v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~ 256 (452)
T 2dgk_A 185 D----ENTIGVVPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSI 256 (452)
T ss_dssp C----TTEEEEECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEE
T ss_pred h----hCCEEEEEEcCCcCCcccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEE
Confidence 4 24566666666556777766 99999999996 999999999986532 11111111101135666
Q ss_pred eec--ccCCCcccceeEEEeChh-HH-HHhhhccCCCCccC-c-CCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHH
Q 013204 270 SFA--KALSSAYMPIGAILVSPE-VS-EVIHSQSNTLGSFS-H-GFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKI 340 (447)
Q Consensus 270 ~~s--K~l~gg~~~~g~~~~~~~-~~-~~~~~~~~~~~~~~-~-~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~ 340 (447)
+++ |.+.+| +++|+++.+++ .+ +.+.......+... . ....+.......+..++++.+.. ++..++..++
T Consensus 257 ~~~~hK~~~~~-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~ 335 (452)
T 2dgk_A 257 SASGHKFGLAP-LGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQV 335 (452)
T ss_dssp EEETTTTTCCC-SSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECcccccCCC-CCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 654 855455 79999999653 33 44321111111000 0 00111111122233334443332 3345666777
Q ss_pred HHHHHHhHhhccCCCceeeEe--eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEe----e----CCEEE
Q 013204 341 APKFQDGVKAFSDSPIIGEIR--GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV----S----GDNIM 410 (447)
Q Consensus 341 ~~~l~~~L~~l~~~~~~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~----~----g~~iR 410 (447)
.+++.+.|+++....++.... ....++.+.+....... .....+.+.|.++|+.+.. . ...+|
T Consensus 336 a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~-------~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lR 408 (452)
T 2dgk_A 336 AAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPG-------YTLYDLSERLRLRGWQVPAFTLGGEATDIVVMR 408 (452)
T ss_dssp HHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCCCS-------CCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEE
T ss_pred HHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCccccc-------CCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEE
Confidence 778888777653222221100 23455566654321000 0135688899999996432 1 13699
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 411 MSPPFIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 411 ~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
++....+|+++++++++.|+++++++++
T Consensus 409 is~~~~~t~e~id~li~~l~~~~~~~~~ 436 (452)
T 2dgk_A 409 IMCRRGFEMDFAELLLEDYKASLKYLSD 436 (452)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9988888999999999999999987765
No 198
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.80 E-value=1.1e-18 Score=170.28 Aligned_cols=232 Identities=16% Similarity=0.170 Sum_probs=153.6
Q ss_pred CCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcc----cC
Q 013204 74 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASL----SG 149 (447)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~----~~ 149 (447)
...+...+++++++++. +.+++++++||++|++.+++++ ..+++|++.++.||+........ .+
T Consensus 64 ~~~p~~~~l~~~la~l~---g~~~~~~~~sG~~Ai~~~~~l~---------~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g 131 (400)
T 3nmy_A 64 THNPTRFAYERCVAALE---GGTRAFAFASGMAATSTVMELL---------DAGSHVVAMDDLYGGTFRLFERVRRRTAG 131 (400)
T ss_dssp TCCHHHHHHHHHHHHHH---TCSEEEEESSHHHHHHHHHTTS---------CTTCEEEEESSCCHHHHHHHHHTHHHHHC
T ss_pred CCCHHHHHHHHHHHHHh---CCCCEEEecCHHHHHHHHHHHc---------CCCCEEEEeCCCchHHHHHHHHhhHhhcC
Confidence 46778889999999986 3447899999999999854433 33578999999998765333221 12
Q ss_pred CccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHH
Q 013204 150 LPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEK 229 (447)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~ 229 (447)
.. +..++.. +++++++.+. +++++|++|++++.+|.+.+ +++
T Consensus 132 ~~------------~~~v~~~------------------d~~~l~~~i~----~~~~~v~~e~~~np~G~~~~----l~~ 173 (400)
T 3nmy_A 132 LD------------FSFVDLT------------------DPAAFKAAIR----ADTKMVWIETPTNPMLKLVD----IAA 173 (400)
T ss_dssp CE------------EEEECTT------------------SHHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHH
T ss_pred eE------------EEEECCC------------------CHHHHHHHhc----cCCCEEEEECCCCCCCeeec----HHH
Confidence 11 1122221 1367777664 46789999999999998876 999
Q ss_pred HHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccceeE--EE-eChhHHHHhhhccCCCCc
Q 013204 230 VQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPIGA--IL-VSPEVSEVIHSQSNTLGS 304 (447)
Q Consensus 230 l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~g~--~~-~~~~~~~~~~~~~~~~~~ 304 (447)
|+++|++||+++|+||+|+.. ....+ ..++ +|++ +++|.++|++.++|. ++ .++++.+.+...
T Consensus 174 i~~la~~~g~~livDe~~~~~-~~~~~---~~~g--~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~------ 241 (400)
T 3nmy_A 174 IAVIARKHGLLTVVDNTFASP-MLQRP---LSLG--ADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFL------ 241 (400)
T ss_dssp HHHHHHHTTCEEEEECTTTHH-HHCCG---GGGT--CSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHH------
T ss_pred HHHHHHHcCCEEEEECCCccc-ccCCh---hhcC--CcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHH------
Confidence 999999999999999998621 11111 1123 5655 488999986556655 44 366777776532
Q ss_pred cCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeE------------------eeeeeE
Q 013204 305 FSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI------------------RGTGLI 366 (447)
Q Consensus 305 ~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------~~~g~~ 366 (447)
....+...+|+.++.++..++.+. ...++..++.+.+.+.|++. +.+..+ +|.|.+
T Consensus 242 -~~~~g~~~~~~~a~~~l~~l~~l~--~r~~~~~~~a~~l~~~L~~~---p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~ 315 (400)
T 3nmy_A 242 -QNSIGGVQGPFDSFLALRGLKTLP--LRMRAHCENALALAQWLETH---PAIEKVIYPGLASHPQHVLAKRQMSGFGGI 315 (400)
T ss_dssp -HHHHCCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTC---TTEEEEECTTSTTSTTHHHHHHHCSSCCSE
T ss_pred -HHhcCCCCCHHHHHHHHHhHhHHH--HHHHHHHHHHHHHHHHHHcC---CCEeEEECCCCCCCcCHHHHHHhCCCCCce
Confidence 222345567888777776665432 23455566666666666543 444444 677899
Q ss_pred EEEEeec
Q 013204 367 LGTEFAD 373 (447)
Q Consensus 367 ~~i~~~~ 373 (447)
+++++..
T Consensus 316 ~~~~l~~ 322 (400)
T 3nmy_A 316 VSIVLKG 322 (400)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
Confidence 9999864
No 199
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.80 E-value=3.7e-17 Score=164.72 Aligned_cols=328 Identities=14% Similarity=0.072 Sum_probs=182.5
Q ss_pred HHHHHHHHHhcCcC-CCCeEEEeCChhhHHHHHHHHHHHHHH----hcCCC-Ccc-eEEEEcCCCccchhhhhcccCCcc
Q 013204 80 LDLAKELLEMFTAS-KMAKVFFTNSGSEANDTQVKLVWYYNN----ALGRP-NKK-KFIARQKSYHGSTLIAASLSGLPA 152 (447)
Q Consensus 80 ~~l~~~l~~~~~~~-~~~~v~~~~sGseA~~~Al~~~~~~~~----~~~~~-~~~-~vi~~~~~yhg~~~~~~~~~~~~~ 152 (447)
.++.+++++++... +.+.++|++|||+||..|++.++.... ..|.. .++ .|++ ....|.+...+....+...
T Consensus 135 ~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~-s~~~h~s~~~~~~~~g~g~ 213 (504)
T 2okj_A 135 QITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFT-SEQSHYSIKKAGAALGFGT 213 (504)
T ss_dssp HHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEE-ETTSCTHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEE-CCcchHHHHHHHHHcCCCc
Confidence 34446667776422 156899999999999999998874320 11210 013 4444 4455555433332222100
Q ss_pred ccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEEEccccCCCCCccCChhHHHHH
Q 013204 153 LHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKV 230 (447)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~~~l~~l 230 (447)
..+..++....++ . ++++|++.+... ....+++|++...++..|.+.+ +++|
T Consensus 214 ---------~~v~~v~~~~~~~-----~--------d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I 267 (504)
T 2okj_A 214 ---------DNVILIKCNERGK-----I--------IPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEI 267 (504)
T ss_dssp ---------GGEEEECBCTTSC-----B--------CHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHH
T ss_pred ---------ccEEEEecCCCCC-----C--------CHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHH
Confidence 0112233221111 0 137788777542 1225778888877777787766 9999
Q ss_pred HHHHHhcCCEEEEehhhcCCCccccccccccCCC-CCCeeeec--ccCCCcccceeEEEeCh-hHHHHhhh-ccCCCCcc
Q 013204 231 QAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI-KPDLVSFA--KALSSAYMPIGAILVSP-EVSEVIHS-QSNTLGSF 305 (447)
Q Consensus 231 ~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~-~~d~v~~s--K~l~gg~~~~g~~~~~~-~~~~~~~~-~~~~~~~~ 305 (447)
.++|++||+++++|++|.++......+.....++ .+|+++++ |.++++ .++|+++.++ ++++.... ........
T Consensus 268 ~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~~~~~~~~l~~~ 346 (504)
T 2okj_A 268 ADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMCAGYLFQP 346 (504)
T ss_dssp HHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCSSSCCS
T ss_pred HHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCC-cceEEEEEECHHHHHHHhcCCCccccCC
Confidence 9999999999999999987643322222233344 58988875 988877 6899999876 46554321 11111000
Q ss_pred Cc-------------CCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEee
Q 013204 306 SH-------------GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFA 372 (447)
Q Consensus 306 ~~-------------~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~ 372 (447)
.. ..+.....+.+.++++++..-.-++..++..++++++.+.|+++++..++........++.+.+.
T Consensus 347 ~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~ 426 (504)
T 2okj_A 347 DKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYI 426 (504)
T ss_dssp CCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEEC
T ss_pred cccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEe
Confidence 00 00011235555555555542112335566777788888888765322222110123333344332
Q ss_pred cCCCCC-CCCCC----CcchHHHHHHHHHHcCce-EE--ee-C--CEEEEecC-CCCCHHHHHHHHHHHHHHHHH
Q 013204 373 DNKSPN-EPFPP----EWGIGAYFGAQCEKHGML-VR--VS-G--DNIMMSPP-FIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 373 ~~~~~~-~~~~~----~~~~~~~~~~~l~~~Gi~-~~--~~-g--~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~ 435 (447)
...... ..-.. .......+.+.|.++|++ +. +. + +.+|+++. ..+|++||++++++|++++++
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 427 PQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp CGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred CccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 110000 00000 001234678889999964 33 22 2 36999985 789999999999999988754
No 200
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.80 E-value=4.6e-18 Score=172.20 Aligned_cols=364 Identities=11% Similarity=0.089 Sum_probs=195.7
Q ss_pred EEecCCccccccCCCCCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHh-cCc----CCCCeEEEeCChhhHHH
Q 013204 35 YLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEM-FTA----SKMAKVFFTNSGSEAND 109 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~----~~~~~v~~~~sGseA~~ 109 (447)
++||+.+ ..++.+|.+++++.+.+... . |+...+..+...++++.+.+. +.. .+.++|++++|+++|+.
T Consensus 106 ~i~l~~g----~~~~~~~~~~~al~~~~~~~-~-Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~ 179 (546)
T 2zy4_A 106 SLSYVRD----QLGLDPAAFLHEMVDGILGC-N-YPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMA 179 (546)
T ss_dssp HHHHHHH----TSCCCHHHHHHHHHHHHHTC-S-CCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHH
T ss_pred hhecccC----CCCCCChHHHHHHHHhhhcC-C-CCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHH
Confidence 4555444 34567788888888877431 2 222223445555655554332 111 13579999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhccc-CCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHH
Q 013204 110 TQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLS-GLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 188 (447)
Q Consensus 110 ~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (447)
.+++.+.... -. .+++.|++.+|.|+++...+.... +... ..+++.....+. .
T Consensus 180 ~~~~~l~~~~--l~-~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~------------~~v~~~~~~~~~-----------~ 233 (546)
T 2zy4_A 180 YIFESLKLNG--LL-KAGDKVAIGMPVFTPYIEIPELAQYALEE------------VAINADPSLNWQ-----------Y 233 (546)
T ss_dssp HHHHHHHHTT--SS-CTTCEEEEEESCCHHHHHHHHSTTSCCEE------------EEEECBGGGTTB-----------C
T ss_pred HHHHHhhhhh--cC-CCCCEEEEeCCCCccHHHHHHHcCCCcEE------------EEEecCcccCCC-----------C
Confidence 9998631100 01 234789999999999875543221 1111 111111000000 0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH--HhcCCEEEEehhhcCCCccccccccccC-CCC
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV--KKYDILFIADEVICAFGRLGTMFGCDKY-SIK 265 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~--~~~g~~li~DEv~~g~g~~g~~~~~~~~-~~~ 265 (447)
++++|++.+. .++++|+++..++.+| .+.+.+.+++|.++| ++||+++|+||+|++|....... .... +..
T Consensus 234 d~~~l~~~~~----~~~k~v~l~~p~NPtG-~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~-~~~~~~~~ 307 (546)
T 2zy4_A 234 PDSELDKLKD----PAIKIFFCVNPSNPPS-VKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSL-FAICPENT 307 (546)
T ss_dssp CHHHHGGGGS----TTEEEEEEESSCSSSC-BCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCH-HHHCGGGE
T ss_pred CHHHHHHhhC----CCCeEEEEECCCCCCC-ccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCH-HHhCCCCE
Confidence 1355655432 2455554444455555 456788899999999 88999999999999875422111 1111 111
Q ss_pred CCeeeecccCCCcccceeEEEeChh-HHHHhhhcc------------CC----C-------------CccCcCCCCCCcH
Q 013204 266 PDLVSFAKALSSAYMPIGAILVSPE-VSEVIHSQS------------NT----L-------------GSFSHGFTYSGHP 315 (447)
Q Consensus 266 ~d~v~~sK~l~gg~~~~g~~~~~~~-~~~~~~~~~------------~~----~-------------~~~~~~~t~~~~~ 315 (447)
..+.+|||.++.+++|+|+++++++ +++.+...- .. + +.+....+.+.+.
T Consensus 308 i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~ 387 (546)
T 2zy4_A 308 LLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLST 387 (546)
T ss_dssp EEEEESTTTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCH
T ss_pred EEEEeCccccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCc
Confidence 2234789999754489999999875 766653100 00 0 0000111223444
Q ss_pred HHHHHH-HH-HHHHHhh-h----cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCC--CCCCCCC----
Q 013204 316 VSCAVA-IE-ALKIYKE-R----NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNK--SPNEPFP---- 382 (447)
Q Consensus 316 ~~~~aa-~a-~l~~~~~-~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~--~~~~~~~---- 382 (447)
+.+.++ +. ....+++ + ...+.++++.+.+.+.|. + ++......-|.++.+++..-. .....+.
T Consensus 388 ~~Q~a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~ 463 (546)
T 2zy4_A 388 PQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELG-M---PPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAV 463 (546)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-S---SCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC-C---CcccCCCCeeEEEEEEHHHhhcccccHHHHHHhh
Confidence 444432 11 1122221 2 233444444444444443 2 211111223445566654200 0000000
Q ss_pred CCcchHHHHHHHHHHcCceEEeeC------CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 013204 383 PEWGIGAYFGAQCEKHGMLVRVSG------DNIMMSPPFIMSPEEVDELISKYGKALKATEERVK 441 (447)
Q Consensus 383 ~~~~~~~~~~~~l~~~Gi~~~~~g------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~ 441 (447)
........+.+.+.++||.+.|+. +.+|++.. ..+++++++++++|+++++++.++.+
T Consensus 464 ~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~~~~~ 527 (546)
T 2zy4_A 464 KQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMADELYAEYS 527 (546)
T ss_dssp HHCCHHHHHHHHHHHHSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHCCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000012346677889999999862 46999964 35899999999999999988876654
No 201
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.80 E-value=9e-18 Score=165.41 Aligned_cols=284 Identities=16% Similarity=0.134 Sum_probs=177.2
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhh---hhcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLI---AASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~---~~~~~~~~ 151 (447)
..+...++++++++++. .++.++++||++|+..+++.+. ..+++||+.++.|++.... .+...|..
T Consensus 112 ~~~~~~~l~~~lA~l~g---~~~~v~~~sG~~Ai~~al~~l~--------~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~ 180 (445)
T 1qgn_A 112 GNPTTVVLEEKISALEG---AESTLLMASGMCASTVMLLALV--------PAGGHIVTTTDCYRKTRIFIETILPKMGIT 180 (445)
T ss_dssp CCHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHHS--------CSSCEEEEETTSCHHHHHHHHHTGGGGTCE
T ss_pred CChHHHHHHHHHHHHhC---CCcEEEeCCHHHHHHHHHHHHh--------CCCCEEEEcCCCchhHHHHHHHHHHHcCCE
Confidence 56778899999999873 2367788889999999999653 2347899999888875422 11111111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++.. +++++++.+.. +++++|++|++++.+|.+.+ +++|.
T Consensus 181 ------------v~~v~~~------------------d~~~l~~ai~~---~tv~lV~le~p~NptG~v~d----l~~I~ 223 (445)
T 1qgn_A 181 ------------ATVIDPA------------------DVGALELALNQ---KKVNLFFTESPTNPFLRCVD----IELVS 223 (445)
T ss_dssp ------------EEEECSS------------------CHHHHHHHHHH---SCEEEEEEESSCTTTCCCCC----HHHHH
T ss_pred ------------EEEeCCC------------------CHHHHHHHhcc---CCCCEEEEeCCCCCCCcccC----HHHHH
Confidence 1122221 14778888763 34488999999888888876 99999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCcc-cceeEEEeChhHHHHhhhccCCCCccCcC
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAY-MPIGAILVSPEVSEVIHSQSNTLGSFSHG 308 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (447)
++|++||+++|+||+|+.. .. .......+|+++ ++|.+++++ .++|++++++++++.+.... ..
T Consensus 224 ~la~~~g~~livD~a~~~~-~~-----~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~-------~~ 290 (445)
T 1qgn_A 224 KLCHEKGALVCIDGTFATP-LN-----QKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLH-------HI 290 (445)
T ss_dssp HHHHHTTCEEEEECTTTCT-TT-----CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHH-------HH
T ss_pred HHHHHcCCEEEEECCCccc-cc-----CCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHH-------HH
Confidence 9999999999999999732 21 122344578886 679998742 35899999999888775321 11
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCC-----Cce----------eeEeeeeeEEEEEeec
Q 013204 309 FTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-----PII----------GEIRGTGLILGTEFAD 373 (447)
Q Consensus 309 ~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~-----~~~----------~~~~~~g~~~~i~~~~ 373 (447)
.....+++.+..++..++.+. ...++..++.+++.+.|++.+.. |.. ...++.|.++.+.+..
T Consensus 291 ~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~ 368 (445)
T 1qgn_A 291 LGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDG 368 (445)
T ss_dssp HCCCCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESS
T ss_pred hCCCCCHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECC
Confidence 112346666665555555432 22344445566677777654211 100 0113467888888864
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHcCceEEe----------------------------eCCEEEEecCCCCCHHHHHHH
Q 013204 374 NKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV----------------------------SGDNIMMSPPFIMSPEEVDEL 425 (447)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~----------------------------~g~~iR~~~~~~~t~e~i~~~ 425 (447)
... ....+.+.|...++.++. ..+.||++.. .|+++.+
T Consensus 369 ~~~----------~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~l 434 (445)
T 1qgn_A 369 DLL----------TTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDL 434 (445)
T ss_dssp CHH----------HHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHH
T ss_pred CHH----------HHHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHH
Confidence 210 122333333211221110 0257999943 5689999
Q ss_pred HHHHHHHHHH
Q 013204 426 ISKYGKALKA 435 (447)
Q Consensus 426 ~~~l~~~l~~ 435 (447)
++.|+++++.
T Consensus 435 i~~L~~al~~ 444 (445)
T 1qgn_A 435 KADILQALDS 444 (445)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998864
No 202
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.79 E-value=9.3e-19 Score=173.72 Aligned_cols=307 Identities=18% Similarity=0.218 Sum_probs=184.3
Q ss_pred CCCHHHHHHHHHH----HhcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCC
Q 013204 49 GSEPRLVAAATAQ----LNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 49 ~~~p~v~~a~~~~----~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
..+|.|.++.... .+...+.++ ....+...++++++++++ +.+++++++||++|+..+++++
T Consensus 103 ~~~~~i~~a~~~~~~~~~~~~~~~Y~--~~g~~~~~~l~~~la~~~---g~~~~i~~~sGt~al~~~l~~~--------- 168 (464)
T 1ibj_A 103 AMSTPLYQTATFKQPSAIENGPYDYT--RSGNPTRDALESLLAKLD---KADRAFCFTSGMAALSAVTHLI--------- 168 (464)
T ss_dssp CSSCCCCCCSBCCCSSSSCCCSCSBT--TTCCHHHHHHHHHHHHHH---TCSEEEEESSHHHHHHHHHTTS---------
T ss_pred CCCccHHhhhhhhhhcccccCCcccc--CCCCHHHHHHHHHHHHHh---CCCeEEEECCHHHHHHHHHHHh---------
Confidence 3456666665432 122222222 224557888999999887 3458899999999998877632
Q ss_pred CCcceEEEEcCCCccchhhh---hcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC
Q 013204 125 PNKKKFIARQKSYHGSTLIA---ASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 201 (447)
Q Consensus 125 ~~~~~vi~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 201 (447)
.++++||+.++.||+..... ....|.. +..++.. +++++++.+.
T Consensus 169 ~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~------------v~~v~~~------------------d~~~l~~~i~--- 215 (464)
T 1ibj_A 169 KNGEEIVAGDDVYGGSDRLLSQVVPRSGVV------------VKRVNTT------------------KLDEVAAAIG--- 215 (464)
T ss_dssp CTTCEEEEESSCCHHHHHHHHHTSGGGTCE------------EEEECTT------------------SHHHHHHHCC---
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHHcCCE------------EEEeCCC------------------CHHHHHHHhc---
Confidence 33578999999998864221 1111111 1122221 1367777664
Q ss_pred CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCc-
Q 013204 202 PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSA- 278 (447)
Q Consensus 202 ~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg- 278 (447)
+++++|+++++++.+|.+.+ +++|.++|++||+++|+||+|.. |..... .+ ...|++ +++|.++++
T Consensus 216 -~~tk~v~l~~p~NptG~v~~----l~~i~~la~~~gi~livDea~~~-g~~~~~--~~---~~~div~~S~sK~~~g~~ 284 (464)
T 1ibj_A 216 -PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIMS-PVLSRP--LE---LGADIVMHSATKFIAGHS 284 (464)
T ss_dssp -SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC-TTTCCG--GG---TTCSEEEEETTTTTTCSS
T ss_pred -cCceEEEEeCCCCCCCEeec----HHHHHHHHHHcCCEEEEECCCcc-cccCCh--hh---cCCEEEEECCcccccCCC
Confidence 46789999999888887775 99999999999999999999973 221111 12 246777 478999872
Q ss_pred ccceeEEEeCh-hHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHh-------H
Q 013204 279 YMPIGAILVSP-EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE--RNIVEQVNKIAPKFQDG-------V 348 (447)
Q Consensus 279 ~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~--~~~~~~~~~~~~~l~~~-------L 348 (447)
++++|++++++ ++++.+... .....+..+++++.++.++++.+.. +...+....+.+++++. .
T Consensus 285 Gl~~G~l~~~~~~l~~~l~~~-------~~~~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~ 357 (464)
T 1ibj_A 285 DVMAGVLAVKGEKLAKEVYFL-------QNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYY 357 (464)
T ss_dssp CCCCEEEEECSHHHHHHHHHH-------HHHTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEEC
T ss_pred CCcEEEEEEChHHHHHHHHHH-------HHhcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEEC
Confidence 36889999985 777776531 1112234567887777777653211 11122333333444321 0
Q ss_pred hhccCCCcee----eEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------------------
Q 013204 349 KAFSDSPIIG----EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------------------- 405 (447)
Q Consensus 349 ~~l~~~~~~~----~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------------------- 405 (447)
..|..++.+. ..++.|.++.+.+.... ....+.+.|...|+.++.+
T Consensus 358 ~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~~-----------~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~ 426 (464)
T 1ibj_A 358 AGLPDHPGHHLHFSQAKGAGSVFSFITGSVA-----------LSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPA 426 (464)
T ss_dssp TTSTTSTTHHHHTTTCSCCCSEEEEECSCHH-----------HHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCS
T ss_pred CCCCCCcchHHHhccCCCCceEEEEEECCHH-----------HHHHHHHhcCcceEeecCCCCceeeecccccccccCCH
Confidence 1122222111 12345677787763210 1234566665556554432
Q ss_pred ---------CCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 406 ---------GDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 406 ---------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+.+|+++.+ |++++++++|++++++
T Consensus 427 ~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 427 EVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKT 461 (464)
T ss_dssp SSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred HHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhh
Confidence 1469999765 8999999999998753
No 203
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.79 E-value=1e-17 Score=163.24 Aligned_cols=282 Identities=16% Similarity=0.166 Sum_probs=174.5
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~ 151 (447)
..+...++++++++++. .+++++++||++|++.+++ .. ..+++||+..+.||+..... +...|.
T Consensus 53 ~~~~~~~lr~~la~~~g---~~~~i~~~sGt~a~~~al~-~~--------~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~- 119 (393)
T 1n8p_A 53 QNPNRENLERAVAALEN---AQYGLAFSSGSATTATILQ-SL--------PQGSHAVSIGDVYGGTHRYFTKVANAHGV- 119 (393)
T ss_dssp CCHHHHHHHHHHHHHTT---CSEEEEESCHHHHHHHHHH-TS--------CSSCEEEEESSCCHHHHHHHHHTSTTTCS-
T ss_pred CChhHHHHHHHHHHHhC---CCcEEEECChHHHHHHHHH-Hc--------CCCCEEEEeCCCchHHHHHHHHHHHHcCc-
Confidence 55677889999999873 3378888889999999999 42 23478999999998753221 111111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
.+..++. + + +++++.+. +++++|+++++++++|.+.+ +++|.
T Consensus 120 -----------~v~~v~~-------------~-----d-~~l~~~i~----~~t~lv~~~~~~nptG~~~~----l~~i~ 161 (393)
T 1n8p_A 120 -----------ETSFTND-------------L-----L-NDLPQLIK----ENTKLVWIETPTNPTLKVTD----IQKVA 161 (393)
T ss_dssp -----------CCEEESS-------------H-----H-HHHHHHSC----SSEEEEEECSSCTTTCCCCC----HHHHH
T ss_pred -----------EEEEeCC-------------C-----h-HHHHHhcc----cCceEEEEECCCCCcceecC----HHHHH
Confidence 1111221 1 2 45555553 36789999999999998876 99999
Q ss_pred HHHHhc----CCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccce-eEEEeC-hhHHHHhhhccCCCC
Q 013204 232 AVVKKY----DILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPI-GAILVS-PEVSEVIHSQSNTLG 303 (447)
Q Consensus 232 ~l~~~~----g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~-g~~~~~-~~~~~~~~~~~~~~~ 303 (447)
++|++| |+++|+||+|+.+.. .... ...+|++ +++|.++++++++ |+++++ +++++.+....
T Consensus 162 ~la~~~~~~~~~~livD~a~~~~~~-~~~~-----~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~---- 231 (393)
T 1n8p_A 162 DLIKKHAAGQDVILVVDNTFLSPYI-SNPL-----NFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQ---- 231 (393)
T ss_dssp HHHHHHTTTTTCEEEEECTTTHHHH-CCGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHH----
T ss_pred HHHHHhCCCCCCEEEEeCCcccccc-CCHH-----HcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHH----
Confidence 999999 999999999985533 2221 1236777 5789999755788 888885 78877775321
Q ss_pred ccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC------CCcee----------eEee-e-ee
Q 013204 304 SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD------SPIIG----------EIRG-T-GL 365 (447)
Q Consensus 304 ~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~------~~~~~----------~~~~-~-g~ 365 (447)
.......++..++++..+++.+. ...++..++.+.+.+.|++... ++.+. ..++ . |.
T Consensus 232 ---~~~g~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~ 306 (393)
T 1n8p_A 232 ---NAIGAIPSPFDAWLTHRGLKTLH--LRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGG 306 (393)
T ss_dssp ---HHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCS
T ss_pred ---HhcCCCCCHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCcc
Confidence 10112335666666666665332 2234444555556665554311 11100 0123 4 77
Q ss_pred EEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee----------------------------CCEEEEecCCCC
Q 013204 366 ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS----------------------------GDNIMMSPPFIM 417 (447)
Q Consensus 366 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------------------------g~~iR~~~~~~~ 417 (447)
++.+.+.... .....+...+...++.++.+ .+.||++.....
T Consensus 307 i~~~~l~~~~----------~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~ 376 (393)
T 1n8p_A 307 MISFRIKGGA----------EAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIED 376 (393)
T ss_dssp EEEEEESSCH----------HHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSC
T ss_pred EEEEEeCCcH----------HHHHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCC
Confidence 8888875321 01233444432222221100 256999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 013204 418 SPEEVDELISKYGKA 432 (447)
Q Consensus 418 t~e~i~~~~~~l~~~ 432 (447)
++++|+.+.++|++.
T Consensus 377 ~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 377 TDDLLEDIKQALKQA 391 (393)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888764
No 204
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.79 E-value=5.4e-18 Score=165.74 Aligned_cols=281 Identities=14% Similarity=0.115 Sum_probs=175.4
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh---cccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA---SLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~---~~~~~~ 151 (447)
+.+...++++.+++++. .++.++++||++|+..+++ +. ..+++|++.++.|++...... ...|..
T Consensus 65 ~~p~~~~l~~~la~~~g---~~~~i~~~sG~~ai~~~~~-l~--------~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~ 132 (403)
T 3cog_A 65 GNPTRNCLEKAVAALDG---AKYCLAFASGLAATVTITH-LL--------KAGDQIICMDDVYGGTNRYFRQVASEFGLK 132 (403)
T ss_dssp -CHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHT-TS--------CTTCEEEEESSCCHHHHHHHHHTGGGGTCE
T ss_pred CCchHHHHHHHHHHHhC---CCcEEEECCHHHHHHHHHH-Hh--------CCCCEEEEeCCCcchHHHHHHHHHHHcCCE
Confidence 45677899999999873 2366777789999999988 42 334789999999988542211 111111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++.. +++++++.+. +++++|+++++++..|.+.+ +++|.
T Consensus 133 ------------v~~v~~~------------------d~~~l~~~i~----~~t~~v~~~~p~nptG~~~~----l~~i~ 174 (403)
T 3cog_A 133 ------------ISFVDCS------------------KIKLLEAAIT----PETKLVWIETPTNPTQKVID----IEGCA 174 (403)
T ss_dssp ------------EEEECTT------------------SHHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHH
T ss_pred ------------EEEECCC------------------CHHHHHHhcC----cCCeEEEEECCCCCCCeeeC----HHHHH
Confidence 1122211 1366776664 36788888988888888776 99999
Q ss_pred HHHHhcC-CEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCc-ccceeEEEeC-hhHHHHhhhccCCCCccC
Q 013204 232 AVVKKYD-ILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSA-YMPIGAILVS-PEVSEVIHSQSNTLGSFS 306 (447)
Q Consensus 232 ~l~~~~g-~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg-~~~~g~~~~~-~~~~~~~~~~~~~~~~~~ 306 (447)
++|++|| +++|+||+|+++. ...+ .+..+|++ +++|.++|+ ..++|+++++ +++++.+... .
T Consensus 175 ~la~~~g~~~livD~~~~~~~-~~~~-----~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~-------~ 241 (403)
T 3cog_A 175 HIVHKHGDIILVVDNTFMSPY-FQRP-----LALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFL-------Q 241 (403)
T ss_dssp HHHTSSSCCEEEEECTTTCTT-TCCT-----TTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHH-------H
T ss_pred HHHHHcCCCEEEEECCCcccc-cCCc-----cccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHH-------H
Confidence 9999999 9999999998542 2222 22457877 578999873 2468999985 7887776531 1
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhh-----------ccCCCcee----eEeeeeeEEEEEe
Q 013204 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA-----------FSDSPIIG----EIRGTGLILGTEF 371 (447)
Q Consensus 307 ~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~-----------l~~~~~~~----~~~~~g~~~~i~~ 371 (447)
.......+++.+.++..+++.+. ...++..++...+.+.|++ |..++.+. ..++.|.++.+.+
T Consensus 242 ~~~g~~~~~~~~~~~~~~l~~l~--~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l 319 (403)
T 3cog_A 242 NSLGAVPSPIDCYLCNRGLKTLH--VRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYI 319 (403)
T ss_dssp HHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEE
T ss_pred HhcCCCCCHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEe
Confidence 22234567888777777776432 1223333333333333332 11222111 1234577888776
Q ss_pred ecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------------------------------CCEEEEecCCCCCHH
Q 013204 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------------------------------GDNIMMSPPFIMSPE 420 (447)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------------------------------g~~iR~~~~~~~t~e 420 (447)
... .....+.+.+.|++.... .+.||+++.+..+++
T Consensus 320 ~~~-------------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d 386 (403)
T 3cog_A 320 KGT-------------LQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEED 386 (403)
T ss_dssp SSC-------------HHHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHH
T ss_pred cCC-------------HHHHHHHHHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHH
Confidence 431 123455666777754310 257999988877777
Q ss_pred HHHHHHHHHHHHH
Q 013204 421 EVDELISKYGKAL 433 (447)
Q Consensus 421 ~i~~~~~~l~~~l 433 (447)
+|+.+.++|++++
T Consensus 387 ~i~~l~~al~~~~ 399 (403)
T 3cog_A 387 LLEDLDQALKAAH 399 (403)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 7777777766543
No 205
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.78 E-value=1.3e-17 Score=162.76 Aligned_cols=342 Identities=11% Similarity=0.042 Sum_probs=192.4
Q ss_pred CEEEecCCccccccCCC--CCHHHHHHHHHHH-hc-CCcccccCcCCChHHHHHHHHHHHhcCc-CCCC--eEEEeCChh
Q 013204 33 KKYLDSLAGLWCTALGG--SEPRLVAAATAQL-NT-LPFYHSFWNRTTKPSLDLAKELLEMFTA-SKMA--KVFFTNSGS 105 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~-~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~--~v~~~~sGs 105 (447)
...+||..|....+=|. .++.|.+++. .+ +. ....|+...+..+....+++++...... ...+ .++.++||+
T Consensus 29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~ 107 (405)
T 3k7y_A 29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGT 107 (405)
T ss_dssp SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHH
T ss_pred cCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchH
Confidence 35688876642222221 3577777766 43 22 2222222233444444444444332211 1234 468999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC--cccCCCCCCChh
Q 013204 106 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH--YWRYAHPGETEE 183 (447)
Q Consensus 106 eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 183 (447)
+|+..+++++... .+ +.|++.+|+|.++.......+.... .+++.+ .+.
T Consensus 108 ~al~~~~~~l~~~------~~-d~Vlv~~P~y~~~~~~~~~~g~~~~-------------~v~~~~~~~~~--------- 158 (405)
T 3k7y_A 108 GAIFVLLEFLKML------NV-ETLYVTNPPYINHVNMIESRGFNLK-------------YINFFDYNLID--------- 158 (405)
T ss_dssp HHHHHHHHHHHTT------TC-CEEEEESSCCHHHHHHHHTTTCEEE-------------EECCEETTTTE---------
T ss_pred HHHHHHHHHHHhc------CC-CEEEEeCCCCHhHHHHHHHcCCeEE-------------EEeccccccCC---------
Confidence 9999999876511 15 8999999999888655554333221 111100 000
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEEc-cccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccc---cccc
Q 013204 184 EYSTRLANNLEDLILKEGPETIAAFIAE-PVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT---MFGC 259 (447)
Q Consensus 184 ~~~~~~~~~le~~l~~~~~~~~a~vi~e-pv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~---~~~~ 259 (447)
.+++++++.+.... ..+++++. |.++.+| ..++.+.+++|.++|++|++++|.||+|.+|...+. ....
T Consensus 159 ----~d~~~l~~~l~~~~--~~~~i~l~~~~~NPTG-~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~ 231 (405)
T 3k7y_A 159 ----INYDLFLNDLRNIP--NGSSVILQISCYNPCS-VNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLI 231 (405)
T ss_dssp ----ECHHHHHHHHHHSC--SSCEEEECCSSCTTTC-CCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHH
T ss_pred ----cCHHHHHHHHHhCC--CCeEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHH
Confidence 01377777776422 23455554 4445555 567899999999999999999999999998854321 1111
Q ss_pred cc-CCCCCCee---eecccCCCcccceeEEEe---ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHH----
Q 013204 260 DK-YSIKPDLV---SFAKALSSAYMPIGAILV---SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIY---- 328 (447)
Q Consensus 260 ~~-~~~~~d~v---~~sK~l~gg~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~---- 328 (447)
.. ......++ +|||.++-.++|+|++++ ++++++.+...- ...........+.+++.++.++++.-
T Consensus 232 ~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~ 308 (405)
T 3k7y_A 232 RKFEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNL---CFIVRKFYSSPVIHTNRILCQLLNNQNLKL 308 (405)
T ss_dssp HHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHH---HHHHHTTTSSCCHHHHHHHHHHHHCHHHHH
T ss_pred HHHHhcCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHH---HHHHhcccCCCcHHHHHHHHHHhCCHHHHH
Confidence 11 11223333 689998843399999853 566655443100 00001112234556666665555421
Q ss_pred ---h-hhcHHHHHHHHHHHHHHhHh----hccCCCceeeEeeeee-EEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 329 ---K-ERNIVEQVNKIAPKFQDGVK----AFSDSPIIGEIRGTGL-ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 329 ---~-~~~~~~~~~~~~~~l~~~L~----~l~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
+ -....++++++++.+.+.|+ ++..-.........|. ++.+.+.. .+..+|.++|
T Consensus 309 ~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~----------------~~~~~L~~~g 372 (405)
T 3k7y_A 309 NWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA----------------KIAEHLKTHH 372 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG----------------GGTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH----------------HHHHHHHHCC
Confidence 0 02234556777777888887 6511011122234444 33333221 1234457889
Q ss_pred ceEEeeCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 400 MLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 400 i~~~~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
|++.|++ ||+.. ..++++|++++++|+++++
T Consensus 373 V~v~p~~---Ris~a-~~~~~~i~~~~~~i~~~~~ 403 (405)
T 3k7y_A 373 IYIINNG---RINVS-GITKNNVDYIADKICLSLS 403 (405)
T ss_dssp EECCTTS---EEEGG-GCCTTHHHHHHHHHHHHHH
T ss_pred EeecCCC---eEEEe-ccCHHHHHHHHHHHHHHHh
Confidence 9999865 88832 3688999999999999875
No 206
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.77 E-value=5.4e-18 Score=167.92 Aligned_cols=289 Identities=12% Similarity=0.032 Sum_probs=174.3
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
+.....++.+.+++ +. .+ +.+++++|+++|+..+++.+. .++++|++..++|++........+..+.+.
T Consensus 55 ~~~~~~~~~~~la~-~g-~~-~~v~~~~G~t~a~~~~~~a~~--------~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v 123 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HS-DY-DGYFLVNGTTSGILSVIQSFS--------QKKGDILMARNVHKSVLHALDISQQEGHFI 123 (446)
T ss_dssp CSSHHHHHHHHHCS-CT-TE-EEEEESSHHHHHHHHHHHTTT--------TSSSCEEECTTCCHHHHHHHHHHTCCEEEC
T ss_pred cchHHHHHHHHHHh-cC-CC-ceEEEeCCHHHHHHHHHHHhc--------CCCCEEEEecCccHHHHHHHHHcCCeEEEE
Confidence 45567788888888 73 22 578889999999999999763 345788888888877655444322222211
Q ss_pred CC-CCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHH
Q 013204 155 QK-FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAV 233 (447)
Q Consensus 155 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l 233 (447)
.. .+........++ ++.+ + .+ ++++|++++.++ .|.+.+ +++|.++
T Consensus 124 ~~~~~~~~~~~~~~d---------------------~~~l---~---~~-~~~~v~~~~~n~-~G~~~~----l~~I~~l 170 (446)
T 2x3l_A 124 ETHQSPLTNHYNKVN---------------------LSRL---N---ND-GHKLVVLTYPNY-YGETFN----VEEVIKS 170 (446)
T ss_dssp EEEECTTTSSEEEEE---------------------C--------------CCEEEEESSCT-TSCCCC----HHHHHHH
T ss_pred eCeeccccCcCCCCC---------------------HHHH---c---CC-CceEEEEECCCC-CeEecC----HHHHHHH
Confidence 10 000000000000 1223 1 12 345666666444 676666 9999999
Q ss_pred HHhcCCEEEEehhhcC-CCccccccccccCCCCCCeeeec--ccCCCcccceeEEEeChhHHH--HhhhccCCCCccCcC
Q 013204 234 VKKYDILFIADEVICA-FGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMPIGAILVSPEVSE--VIHSQSNTLGSFSHG 308 (447)
Q Consensus 234 ~~~~g~~li~DEv~~g-~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~ 308 (447)
|++||+++|+||+|++ +...+...... ...+|++++| |.++++ .++|++++++++++ .+... ....
T Consensus 171 ~~~~~~~livDea~~~~~~f~~~~~~~~--~~g~Di~~~S~~K~l~~~-~g~g~l~~~~~~i~~~~~~~~------~~~~ 241 (446)
T 2x3l_A 171 LHQLNIPVLIDEAHGAHFGLQGFPDSTL--NYQADYVVQSFHKTLPAL-TMGSVLYIHKNAPYRENIIEY------LSYF 241 (446)
T ss_dssp HHHTTCCEEEECTTCTTTTSTTSCCCGG--GGTCSEEEECHHHHSSSC-TTCEEEEEETTCTTHHHHHHH------HHHH
T ss_pred HHhcCCeEEEcchhhhhhccCCCCCChH--HcCCCEEEECCccccccc-cccEEEEEcCCcCCHHHHHHH------HHHH
Confidence 9999999999999985 22222211122 2237888765 988776 57899999877643 33211 0111
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCc
Q 013204 309 FTYSGHPVSCAVAIEALKIYKERN---IVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEW 385 (447)
Q Consensus 309 ~t~~~~~~~~~aa~a~l~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~ 385 (447)
.+.+.+...+++..++++.++... +.++.+++.+++++. .+ .+... ..+..+.+.+...
T Consensus 242 ~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~--g~---~~~~~--~~~~~l~i~~~~~----------- 303 (446)
T 2x3l_A 242 QTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK--GF---EMLQV--DDPLKLLIKYEGF----------- 303 (446)
T ss_dssp SCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--TC---EEEEC--SSTTEEEEECTTS-----------
T ss_pred cCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc--CC---EECcC--CCCeEEEEEeCCc-----------
Confidence 234456666666666677665422 566666666666665 22 11111 0122344444311
Q ss_pred chHHHHHHHHHHcCceEE-eeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 013204 386 GIGAYFGAQCEKHGMLVR-VSGDNIMMSPPFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 386 ~~~~~~~~~l~~~Gi~~~-~~g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
....+.+.|.++||.+. ++.+.+|++++..+|++++ +++++|+++++++
T Consensus 304 -~~~~l~~~L~~~GI~v~~~g~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 304 -TGHDIQNWFMNAHIYLELADDYQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp -CHHHHHHHHHHTTEEESEECSSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred -CHHHHHHHHHHCCCEEEecCCCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 14568888999999997 4446799999988899999 9999999887644
No 207
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.76 E-value=1e-15 Score=154.09 Aligned_cols=330 Identities=14% Similarity=0.073 Sum_probs=179.1
Q ss_pred HHHHHHHHHhcCcC-CCCeEEEeCChhhHHHHHHHHHHHHH----HhcCCC-CcceEEEEcCCCccchhhhhcccCCccc
Q 013204 80 LDLAKELLEMFTAS-KMAKVFFTNSGSEANDTQVKLVWYYN----NALGRP-NKKKFIARQKSYHGSTLIAASLSGLPAL 153 (447)
Q Consensus 80 ~~l~~~l~~~~~~~-~~~~v~~~~sGseA~~~Al~~~~~~~----~~~~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 153 (447)
.++.+++++++... +.+.++|++|||+||..|+..++... ...|.. ..+.+|+.+...|.+...+....|...
T Consensus 138 ~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~- 216 (511)
T 3vp6_A 138 QITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGT- 216 (511)
T ss_dssp HHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcCCCC-
Confidence 34445556665322 24689999999999999999887532 122211 123344445556665544443333210
Q ss_pred cCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 154 HQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
..+..++....++ .++++|++.+... ....+.+|+++..++..|.+.+ |++|.
T Consensus 217 --------~~~~~v~~d~~~~-------------~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~----l~~I~ 271 (511)
T 3vp6_A 217 --------DNVILIKCNERGK-------------IIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIA 271 (511)
T ss_dssp --------GGEEEECBCTTSC-------------BCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC----HHHHH
T ss_pred --------CcEEEeecCCCCc-------------cCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc----HHHHH
Confidence 0011222211111 1147888888642 2233678888888888887766 99999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCC-CCCeeee--cccCCCcccceeEEEeCh-hHHHHhhhc-cCCCCccC
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSI-KPDLVSF--AKALSSAYMPIGAILVSP-EVSEVIHSQ-SNTLGSFS 306 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~-~~d~v~~--sK~l~gg~~~~g~~~~~~-~~~~~~~~~-~~~~~~~~ 306 (447)
++|++||+++++|++|.+.......+.....|+ ..|++++ .|.++++ ...|+++.+. +++...... ........
T Consensus 272 ~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~ 350 (511)
T 3vp6_A 272 DICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMHASYLFQQD 350 (511)
T ss_dssp HHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCTTTCCSS
T ss_pred HHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhccCCccccCcc
Confidence 999999999999999985432222222222233 4688765 5888876 5778888755 445443211 10000000
Q ss_pred ----------cC---CCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeec
Q 013204 307 ----------HG---FTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFAD 373 (447)
Q Consensus 307 ----------~~---~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~ 373 (447)
.. .+.....+.+.+++..+....-+++.++..++.+++++.|+++++..++........++.+.+..
T Consensus 351 ~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p 430 (511)
T 3vp6_A 351 KHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIP 430 (511)
T ss_dssp CSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECC
T ss_pred cccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeC
Confidence 00 00012234444444333221124456777778888888887653322221101233333444322
Q ss_pred CCCCCCCCCC-----CcchHHHHHHHHHHcCceEEe---e-C--CEEEEec-CCCCCHHHHHHHHHHHHHHHHHH
Q 013204 374 NKSPNEPFPP-----EWGIGAYFGAQCEKHGMLVRV---S-G--DNIMMSP-PFIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 374 ~~~~~~~~~~-----~~~~~~~~~~~l~~~Gi~~~~---~-g--~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
.......... .......+.++|+++|+++.. . + +.+|+++ +..++++||+.+++.|++.-+.+
T Consensus 431 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 431 QSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 505 (511)
T ss_dssp GGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 1100000000 000133578889999975442 1 2 3599998 67899999999999998876543
No 208
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.75 E-value=6.6e-16 Score=155.16 Aligned_cols=344 Identities=14% Similarity=0.033 Sum_probs=188.6
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHHHHhcCcC-CCC---eEEEeCChhhHHHHHHHHHHHHHH----h
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTAS-KMA---KVFFTNSGSEANDTQVKLVWYYNN----A 121 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~---~v~~~~sGseA~~~Al~~~~~~~~----~ 121 (447)
.+|.+.+++.+.+..............+...++.+++++++.-. ..+ ..++++||++|+..++..++.... .
T Consensus 68 ~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~ 147 (502)
T 3hbx_A 68 MEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (502)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHh
Confidence 58899999988776532211110111223334556677776321 022 345699999999999887653321 1
Q ss_pred cCCC-CcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCc-ccCCCCCCChhHHHHHHHHHHHHHHHh
Q 013204 122 LGRP-NKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHY-WRYAHPGETEEEYSTRLANNLEDLILK 199 (447)
Q Consensus 122 ~~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~le~~l~~ 199 (447)
.|.. .+..|++-++. |.+........|... ..++.... +. . ++++|++.+.
T Consensus 148 ~G~~~~~~~vi~~~~~-h~s~~~~~~~~G~~~------------~~v~~~~~~~~-----~--------d~~~l~~~i~- 200 (502)
T 3hbx_A 148 EGKPVDKPNIVTGANV-QVCWEKFARYFEVEL------------KEVKLSEGYYV-----M--------DPQQAVDMVD- 200 (502)
T ss_dssp TTCCCSCCEEEEETTC-CHHHHHHHHHTTCEE------------EEECCBTTBCS-----C--------CHHHHHHHCC-
T ss_pred cCCCCCCcEEEEcCCc-hHHHHHHHHHcCcee------------EEEecCCCcCc-----C--------CHHHHHHHHh-
Confidence 1322 22356665544 454433333333221 12222110 11 0 1366776664
Q ss_pred hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhc------CCEEEEehhhcCCCc--cccccccccCCCCCCeeee
Q 013204 200 EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKY------DILFIADEVICAFGR--LGTMFGCDKYSIKPDLVSF 271 (447)
Q Consensus 200 ~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~------g~~li~DEv~~g~g~--~g~~~~~~~~~~~~d~v~~ 271 (447)
+ .+.+|+++..++..|.+.+ +++|.++|++| |+++++|++|.++.. ..............|.+++
T Consensus 201 --~-~t~~v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~ 273 (502)
T 3hbx_A 201 --E-NTICVAAILGSTLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINV 273 (502)
T ss_dssp --T-TEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEE
T ss_pred --h-CCEEEEEecCCCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEE
Confidence 3 4556665555555577766 99999999999 999999999986531 0111111111113566654
Q ss_pred --cccCCCcccceeEEEeC-hhHH-HHhhhccCCCCccCcC--CCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHH
Q 013204 272 --AKALSSAYMPIGAILVS-PEVS-EVIHSQSNTLGSFSHG--FTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAP 342 (447)
Q Consensus 272 --sK~l~gg~~~~g~~~~~-~~~~-~~~~~~~~~~~~~~~~--~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~ 342 (447)
.|.+.++ .++|+++.+ ++.+ +.+.......+..... ..++.....+.+..++++.+.. .+..++..++.+
T Consensus 274 s~hK~l~~p-~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~ 352 (502)
T 3hbx_A 274 SGHKYGLVY-AGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMI 352 (502)
T ss_dssp ETTTTTCCC-SSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCC-CCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666555 688887775 4443 2221111111110000 1122222233444445554433 334566677778
Q ss_pred HHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-------C-CEEEEecC
Q 013204 343 KFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-------G-DNIMMSPP 414 (447)
Q Consensus 343 ~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------g-~~iR~~~~ 414 (447)
++++.|+++....++.. .....++.+.+...... ....+.+.|.++|+++... + ..+|++..
T Consensus 353 ~l~~~L~~~~~~~~~~~-~~~~~~v~f~~~~~~~~---------~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~ 422 (502)
T 3hbx_A 353 VLREGLEKTERFNIVSK-DEGVPLVAFSLKDSSCH---------TEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIR 422 (502)
T ss_dssp HHHHHHHTTTCEEECSC-SSSSSEEEEEESSCSSC---------CHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECC
T ss_pred HHHHHHHhCCCEEEEeC-CCCceEEEEEecCCCcC---------CHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeC
Confidence 88888877632222111 02344556666532111 1346889999999986422 1 36999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 013204 415 FIMSPEEVDELISKYGKALKATEE 438 (447)
Q Consensus 415 ~~~t~e~i~~~~~~l~~~l~~~~~ 438 (447)
..+|+++++.+++.|+++++++++
T Consensus 423 ~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 423 EDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 209
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.75 E-value=1.9e-16 Score=157.40 Aligned_cols=289 Identities=12% Similarity=0.054 Sum_probs=169.4
Q ss_pred HHHHHHHHHHhcCcCCCCeEEEeCChh-hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCC
Q 013204 79 SLDLAKELLEMFTASKMAKVFFTNSGS-EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF 157 (447)
Q Consensus 79 ~~~l~~~l~~~~~~~~~~~v~~~~sGs-eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 157 (447)
..++.+++++++. .+.+ ++|++||+ .++..++..++... +++.||+.++ .|.+....+...|....
T Consensus 135 ~~~~~~~la~~~g-~~~~-~~~t~g~te~a~~~al~~~~~~~------~~~~vi~~~~-~h~s~~~~~~~~G~~~~---- 201 (456)
T 2z67_A 135 TNKILESFFKQLG-LNVH-AIATPISTGMSISLCLSAARKKY------GSNVVIYPYA-SHKSPIKAVSFVGMNMR---- 201 (456)
T ss_dssp HHHHHHHHHHHTT-CCCE-EEEESSCHHHHHHHHHHHHHHHH------CCCEEEEECC-CCHHHHHHHHHTTCEEE----
T ss_pred HHHHHHHHHHHcC-CCCC-EEEeCcHHHHHHHHHHHHHHHhc------CCCEEEEECC-CcHHHHHHHHHcCCCce----
Confidence 3457777887763 3333 99999999 57776777654321 2355666666 55554433333332211
Q ss_pred CCCCCcceecCC---CCcccCCCCCCChhHHHHHHHHHHHHHH-HhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHH
Q 013204 158 DLPAPFVLHTDC---PHYWRYAHPGETEEEYSTRLANNLEDLI-LKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAV 233 (447)
Q Consensus 158 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~le~~l-~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l 233 (447)
.++. .+.+. .++++|++.+ ......++.+|++...++..|.+.+ +++|.++
T Consensus 202 --------~v~~~~~~~~~~-------------~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~l 256 (456)
T 2z67_A 202 --------LVETVLDGDRVY-------------VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKI 256 (456)
T ss_dssp --------EECCEEETTEEE-------------CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHH
T ss_pred --------EEEEeccCCCCC-------------cCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHH
Confidence 1111 01111 1147788887 3211124555655555556677766 9999999
Q ss_pred HHhcCCEEEEehhhcCCCcccc-ccccc-cCCCCCCeeee--cccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcC
Q 013204 234 VKKYDILFIADEVICAFGRLGT-MFGCD-KYSIKPDLVSF--AKALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHG 308 (447)
Q Consensus 234 ~~~~g~~li~DEv~~g~g~~g~-~~~~~-~~~~~~d~v~~--sK~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 308 (447)
|++||+++++||+|.++. .|. ..... ..+ .+|++++ +|.+.++ +++|++++ ++++++.+... ..+
T Consensus 257 a~~~g~~v~vD~A~~~~~-~g~~~~~~~~~~~-~~D~~~~s~hK~~~~p-~g~G~l~~~~~~~~~~l~~~-------~~g 326 (456)
T 2z67_A 257 CENYDIPHIINGAYAIQN-NYYLEKLKKAFKY-RVDAVVSSSDKNLLTP-IGGGLVYSTDAEFIKEISLS-------YPG 326 (456)
T ss_dssp HHHHTCCEEEECTTTTTC-HHHHHHHHHHHTS-CCSEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHTT-------SCS
T ss_pred HHHcCCcEEEECcchHHH-HHhhHHHHHhhCC-CCCEEEEcCCCCcCCC-CCeEEEEEcCHHHHhhcCcC-------CCC
Confidence 999999999999987552 221 11111 112 5788876 5876666 78999999 57777777421 111
Q ss_pred CCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhcc---CCCceeeEeeeeeEEEEEeecCCCCCCCCC
Q 013204 309 FTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFS---DSPIIGEIRGTGLILGTEFADNKSPNEPFP 382 (447)
Q Consensus 309 ~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~---~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~ 382 (447)
.. ..++ ..+..+++..+.. ++..++..++.+++++.|+++. +..+.. .. .++.+.+..+.
T Consensus 327 ~~-~~~~--~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~---~~-~~v~~~~~~~~------- 392 (456)
T 2z67_A 327 RA-SATP--VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLD---VE-SPIASCISVNS------- 392 (456)
T ss_dssp CB-CSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCC---CC-CSSEEEEECSS-------
T ss_pred CC-CCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecC---CC-CeEEEEEeccc-------
Confidence 11 1222 2233334443322 3456778888889988888773 322221 11 23334442111
Q ss_pred CCcchHHHHHHHHHHcCc---eEE------------e-eCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 383 PEWGIGAYFGAQCEKHGM---LVR------------V-SGDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 383 ~~~~~~~~~~~~l~~~Gi---~~~------------~-~g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
....+.++|.++|+ -+. . ..+.+|++.++.+|+++|++++++|++++
T Consensus 393 ----~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 393 ----DPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp ----CHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred ----HHHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 02357888888885 232 1 13579999988899999999999998754
No 210
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.75 E-value=1e-16 Score=160.29 Aligned_cols=338 Identities=13% Similarity=0.061 Sum_probs=187.9
Q ss_pred EEecCCccccccCCCCCHHHHHHHHHHHhcCCc-cccc--CcCCChHHHH----HHHHHHHhcCcCCCC---eEEEeCCh
Q 013204 35 YLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF-YHSF--WNRTTKPSLD----LAKELLEMFTASKMA---KVFFTNSG 104 (447)
Q Consensus 35 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~--~~~~~~~~~~----l~~~l~~~~~~~~~~---~v~~~~sG 104 (447)
.|++.++. ...+|.|++++.+.+.+... +++. .....+...+ ..+++++++. .+.+ ..+..+||
T Consensus 46 ~i~L~a~e-----~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g-~~~~~~~~~V~~~sG 119 (483)
T 1rv3_A 46 GLELIASE-----NFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYG-LDPQCWGVNVQPYSG 119 (483)
T ss_dssp SEECCTTC-----CCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTT-CCTTTEEEECCCSSH
T ss_pred CeEEEcCC-----CCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhC-CCcccCceEEEECCc
Confidence 46665442 13689999999988865320 1110 1112223333 3377777764 2332 22455667
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhH
Q 013204 105 SEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184 (447)
Q Consensus 105 seA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (447)
++||..++..+. .++++|++.++.|.++...... .+..........+..++++.. ....
T Consensus 120 s~an~~~~~all--------~pGD~Vl~~~~~~~~~~~~~~~-----~~~~~v~~~G~~~~~v~~~~~----~~~~---- 178 (483)
T 1rv3_A 120 SPANFAVYTALV--------EPHGRIMGLDLPDGGHLTHGFM-----TDKKKISATSIFFESMAYKVN----PDTG---- 178 (483)
T ss_dssp HHHHHHHHHHHT--------CTTCEEEEECGGGTCCGGGCCB-----CSSCBCSHHHHHSEEEEECBC----TTTC----
T ss_pred HHHHHHHHHHhc--------CCCCEEEEecCccCcCcchhhh-----hcccCcccccceEEEEECccc----cCCC----
Confidence 799988887653 3457899988877665321100 000000000000111111000 0000
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccc-cccccC
Q 013204 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTM-FGCDKY 262 (447)
Q Consensus 185 ~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~-~~~~~~ 262 (447)
..++++|++.+... ++++|++ ...+.+ .+.+ +++|+++|++||++||+|++|. |+...|.. ..+.
T Consensus 179 --~iD~d~le~~i~~~---~tklIi~-~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~-- 245 (483)
T 1rv3_A 179 --YIDYDRLEENARLF---HPKLIIA-GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE-- 245 (483)
T ss_dssp --SBCHHHHHHHHHHH---CCSEEEE-CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG--
T ss_pred --cCCHHHHHHHHhhc---CCcEEEE-eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC--
Confidence 01147888888632 2456666 433333 3444 9999999999999999999986 32111210 1111
Q ss_pred CCCCCeeee--cccCCCcccceeEEEeChh---------------HHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHH
Q 013204 263 SIKPDLVSF--AKALSSAYMPIGAILVSPE---------------VSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEAL 325 (447)
Q Consensus 263 ~~~~d~v~~--sK~l~gg~~~~g~~~~~~~---------------~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l 325 (447)
..|++++ +|.|+| ++.|+++++++ +.+.+... ...+...+++...+++..+++
T Consensus 246 --~~div~~s~~K~l~G--prgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~------~~~~~~g~~~~~~iaal~~Al 315 (483)
T 1rv3_A 246 --HCHVVTTTTHKTLRG--CRAGMIFYRRGVRSVDPKTGKEILYNLESLINSA------VFPGLQGGPHNHAIAGVAVAL 315 (483)
T ss_dssp --TCSEEEEESSGGGCC--CSCEEEEEECSBCC-------CCBCCHHHHHHHH------HTTTTCCSCCHHHHHHHHHHH
T ss_pred --CCcEEEecCcccCCC--CCceEEEEcchhhhhccccCcchhhHHHHHhhhh------cCCcccCCccHHHHHHHHHHH
Confidence 3577764 599976 57799998874 33333211 011112233444455555567
Q ss_pred HHHhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeEeee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCce
Q 013204 326 KIYKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGML 401 (447)
Q Consensus 326 ~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 401 (447)
+.+.. ++..+++.++.+++.+.|+++ +..++. .+. ..+..+++..... ....+.+.|.+.||.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~~~~~~~v~~~~~g~----------~~~~~~~~L~~~gI~ 382 (483)
T 1rv3_A 316 KQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVT--GGSDNHLILVDLRSKGT----------DGGRAEKVLEACSIA 382 (483)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGG--GSCSSSEEEEEGGGGTC----------CHHHHHHHHHHTTEE
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHHHHhc-CCEecc--CCCCCceEEEeccCCCC----------CHHHHHHHHHhCCcE
Confidence 65543 345677788888888888775 322221 111 1344556543211 134577788899999
Q ss_pred EE----eeC------CEEEEecCCCCC----HHHHHHHHHHHHHHHHH
Q 013204 402 VR----VSG------DNIMMSPPFIMS----PEEVDELISKYGKALKA 435 (447)
Q Consensus 402 ~~----~~g------~~iR~~~~~~~t----~e~i~~~~~~l~~~l~~ 435 (447)
+. ++. +.+||+++..+| ++|+++++++|+++++.
T Consensus 383 v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 383 CNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp CEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 88 532 479999886556 99999999999988865
No 211
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.73 E-value=6e-17 Score=155.82 Aligned_cols=316 Identities=10% Similarity=0.011 Sum_probs=183.2
Q ss_pred CCHHHHHHHHHHHhcCC----ccccc---CcCCChHHHHHHHHHHHhcCcCCCCeEEEeCCh-hhHHHHHHHHHHHHHHh
Q 013204 50 SEPRLVAAATAQLNTLP----FYHSF---WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSG-SEANDTQVKLVWYYNNA 121 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~----~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~~sG-seA~~~Al~~~~~~~~~ 121 (447)
.+|.+++++.+.+.+.. ..+.. .....+...++++++++.+.....+++++++|+ ++|+..++..+...
T Consensus 14 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~--- 90 (360)
T 1w23_A 14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTK--- 90 (360)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCT---
T ss_pred CCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCC---
Confidence 68999999999886420 00111 011223466788888888743234689999988 99999998765310
Q ss_pred cCCCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCC-cccCCCCCCChhHHHHHHHHHHHH-HHHh
Q 013204 122 LGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH-YWRYAHPGETEEEYSTRLANNLED-LILK 199 (447)
Q Consensus 122 ~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~le~-~l~~ 199 (447)
+ ++..+++.....|.....+.. .| .. ..++... .... +++++++ .+.
T Consensus 91 -~--~~g~~vi~~~~~~~~~~~~~~-~g-~~------------~~v~~~~~~~~~-------------d~~~l~~~~i~- 139 (360)
T 1w23_A 91 -G--TIGNYVLTGSWSEKALKEAKL-LG-ET------------HIAASTKANSYQ-------------SIPDFSEFQLN- 139 (360)
T ss_dssp -T--CEEEEEECSHHHHHHHHHHHT-TS-EE------------EEEEECGGGTSC-------------SCCCGGGCCCC-
T ss_pred -C--CcccEEEecchhHHHHHHHHH-hC-Ce------------EEeecccccCcC-------------CccchHhhccC-
Confidence 1 112223322222222111111 12 11 1111110 0000 0134444 332
Q ss_pred hCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCC
Q 013204 200 EGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSS 277 (447)
Q Consensus 200 ~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~g 277 (447)
+++++|+++++++.+|.+.+ +++++||+++|+||+|+.+... ..... . |+++ ++|.++.
T Consensus 140 ---~~~k~v~~~~~~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~---~~~~~--~--di~~~s~sK~~~~ 200 (360)
T 1w23_A 140 ---ENDAYLHITSNNTIYGTQYQ---------NFPEINHAPLIADMSSDILSRP---LKVNQ--F--GMIYAGAQKNLGP 200 (360)
T ss_dssp ---TTEEEEEEESEETTTTEECS---------SCCCCCSSCEEEECTTTTTSSC---CCGGG--C--SEEEEETTTTTSC
T ss_pred ---CCCCEEEEeCCCCCcceecc---------cccccCCceEEEechhhcCCCC---cCccc--C--CEEEEEcccccCC
Confidence 35677777777777776644 2334899999999999844221 11111 1 6765 4698864
Q ss_pred cccceeEEEeChhHHHHhhhccCCCCccC------cCCC-CCCcHHHHHHHHHHHHHHhh----hcHHHHHHHHHHHHHH
Q 013204 278 AYMPIGAILVSPEVSEVIHSQSNTLGSFS------HGFT-YSGHPVSCAVAIEALKIYKE----RNIVEQVNKIAPKFQD 346 (447)
Q Consensus 278 g~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~t-~~~~~~~~~aa~a~l~~~~~----~~~~~~~~~~~~~l~~ 346 (447)
.++|++++++++++.+.... ...+. ...+ .+.+..++.++.++++.+.+ ++..++.+++.+++.+
T Consensus 201 --~G~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~ 276 (360)
T 1w23_A 201 --SGVTVVIVKKDLLNTKVEQV--PTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYD 276 (360)
T ss_dssp --TTCEEEEEEHHHHCSCCTTC--CGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred --CCcEEEEEcHHHHhhcccCC--cchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 36899999998876654210 00000 1122 24466677777777876543 3356777778888888
Q ss_pred hHhhccCCCceeeE--e-ee-eeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---CEEEEecCCCCCH
Q 013204 347 GVKAFSDSPIIGEI--R-GT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---DNIMMSPPFIMSP 419 (447)
Q Consensus 347 ~L~~l~~~~~~~~~--~-~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~~iR~~~~~~~t~ 419 (447)
.|+++.. +.... . .. +.++.+.+.... ....+.+.|.++||.+.++. +.+|++++..+++
T Consensus 277 ~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~ 343 (360)
T 1w23_A 277 TIDESNG--FYVGHAEKGSRSLMNVTFNLRNEE-----------LNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPI 343 (360)
T ss_dssp HHHTTTT--SSEESSCGGGBCSSEEEEECSSHH-----------HHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCH
T ss_pred HHHHccC--cccccCCchhccCcEEEEEcCCCc-----------cHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCH
Confidence 8877632 21111 1 12 336666654310 13457788899999987653 5699999888899
Q ss_pred HHHHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKALKA 435 (447)
Q Consensus 420 e~i~~~~~~l~~~l~~ 435 (447)
+++++++++|++++++
T Consensus 344 ~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 344 DACIALRELMIQFKEN 359 (360)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999988754
No 212
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.73 E-value=1.5e-16 Score=155.74 Aligned_cols=285 Identities=12% Similarity=0.076 Sum_probs=171.0
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~ 151 (447)
..+...++++++++++. .+.+++++||++|+..+++.+. ..+++||+..+.|++..... +...|..
T Consensus 80 ~~p~~~~le~~lA~l~g---~~~~i~~ssGt~Ai~~al~~l~--------~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~ 148 (415)
T 2fq6_A 80 GTLTHFSLQQAMCELEG---GAGCVLFPCGAAAVANSILAFI--------EQGDHVLMTNTAYEPSQDFCSKILSKLGVT 148 (415)
T ss_dssp CCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHTTC--------CTTCEEEEETTSCHHHHHHHHHTGGGGTCE
T ss_pred CCchHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHHHHHHcCcE
Confidence 56678889999999863 3467888999999999998542 23478999999998764221 1111111
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++..+ ++++++.+. +++++|++|.+++..|.+.+ +++|.
T Consensus 149 ------------v~~v~~~d------------------~~~le~ai~----~~tklV~~e~~~NptG~v~d----l~~I~ 190 (415)
T 2fq6_A 149 ------------TSWFDPLI------------------GADIVKHLQ----PNTKIVFLESPGSITMEVHD----VPAIV 190 (415)
T ss_dssp ------------EEEECTTC------------------GGGGGGGCC----TTEEEEEEESSCTTTCCCCC----HHHHH
T ss_pred ------------EEEECCCC------------------HHHHHHhhc----cCCcEEEEECCCCCCCEeec----HHHHH
Confidence 11112111 255666554 35788999998888888876 99999
Q ss_pred HHHHh--cCCEEEEehhhcCCCccccccccccCCCCCCeee--ecccCCCccc-ceeEEEeChhHHHHhhhccCCCCccC
Q 013204 232 AVVKK--YDILFIADEVICAFGRLGTMFGCDKYSIKPDLVS--FAKALSSAYM-PIGAILVSPEVSEVIHSQSNTLGSFS 306 (447)
Q Consensus 232 ~l~~~--~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~--~sK~l~gg~~-~~g~~~~~~~~~~~~~~~~~~~~~~~ 306 (447)
++|++ ||+++|+|++|... ....+. ....|+++ ++|.+++++. .+|++++++++++.+.... .
T Consensus 191 ~la~~~~~g~~livD~a~a~~-~~~~p~-----~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~------~ 258 (415)
T 2fq6_A 191 AAVRSVVPDAIIMIDNTWAAG-VLFKAL-----DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA------Y 258 (415)
T ss_dssp HHHHHHCTTCEEEEECTTTTT-TSSCGG-----GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH------H
T ss_pred HHHHhhcCCCEEEEECCCccc-ccCCcc-----ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHH------H
Confidence 99999 99999999999732 222221 23468774 6799987532 3688889888877765321 0
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC-----CCcee----------eEeeeeeEEEEEe
Q 013204 307 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD-----SPIIG----------EIRGTGLILGTEF 371 (447)
Q Consensus 307 ~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~~~----------~~~~~g~~~~i~~ 371 (447)
.. ....++..+..++..++.+. ...++..++.+.+++.|++.+. ++.+. ...+.|.++.+.+
T Consensus 259 ~~-G~~~~~~~a~~~~~~l~~l~--~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l 335 (415)
T 2fq6_A 259 LM-GQMVDADTAYITSRGLRTLG--VRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVL 335 (415)
T ss_dssp HT-TCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEE
T ss_pred hc-CCCCCHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEE
Confidence 11 12335665555555555432 2234445556666666655311 11100 0124577888887
Q ss_pred ecCCCCCCCCCCCcchHHHHHHHHHHcCce----------EE--e--------------eCCEEEEecCCCCCHHHHHHH
Q 013204 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGML----------VR--V--------------SGDNIMMSPPFIMSPEEVDEL 425 (447)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~----------~~--~--------------~g~~iR~~~~~~~t~e~i~~~ 425 (447)
...... .....+...+.-.++. .. | .++.||++..+..++++|+.+
T Consensus 336 ~g~~~~--------~~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l 407 (415)
T 2fq6_A 336 KKKLNN--------EELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADL 407 (415)
T ss_dssp SSCCCH--------HHHHHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHH
T ss_pred CCCCCH--------HHHHHHHHhCCcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHH
Confidence 641000 0011122221111110 00 0 135799999999999999998
Q ss_pred HHHHHH
Q 013204 426 ISKYGK 431 (447)
Q Consensus 426 ~~~l~~ 431 (447)
.++|++
T Consensus 408 ~~al~~ 413 (415)
T 2fq6_A 408 DAGFAR 413 (415)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 888864
No 213
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.73 E-value=5.6e-16 Score=153.88 Aligned_cols=320 Identities=14% Similarity=0.078 Sum_probs=173.4
Q ss_pred CCHHHHHHHHHHHhc-CCcccc---cCcCC--ChHHH-HHHHHHHHhcCcCCCC---eEEEeCChhhHHHHHHHHHHHHH
Q 013204 50 SEPRLVAAATAQLNT-LPFYHS---FWNRT--TKPSL-DLAKELLEMFTASKMA---KVFFTNSGSEANDTQVKLVWYYN 119 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~-~~~~~~---~~~~~--~~~~~-~l~~~l~~~~~~~~~~---~v~~~~sGseA~~~Al~~~~~~~ 119 (447)
.+|+|++|+...+.+ +..+++ ..++. .+... ...+++++++. .+.+ ..++++||++||..++..+.
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g-~~~~~~~~~v~~~sGt~An~~al~al~--- 141 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFD-LDPAQWGVNVQPYSGSPANLAVYTALL--- 141 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTT-CCTTTEEEECCCSSHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcC-CCcccCceEEeCCchHHHHHHHHHHHc---
Confidence 589999999887754 221211 11111 12222 22377788773 2322 24566799999999998763
Q ss_pred HhcCCCCcceEEEEcCCCccchh-h------hhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHH
Q 013204 120 NALGRPNKKKFIARQKSYHGSTL-I------AASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192 (447)
Q Consensus 120 ~~~~~~~~~~vi~~~~~yhg~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (447)
.++++||+.++.|.|+.. + .+..++.. + ..++++- +... ...++++
T Consensus 142 -----~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~-----~-------~~~~~~v----d~~~------~~iD~d~ 194 (490)
T 2a7v_A 142 -----QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIF-----F-------ESMPYKL----NPKT------GLIDYNQ 194 (490)
T ss_dssp -----CSCEECCC-------------------------------------------CCB----CTTT------CSBCHHH
T ss_pred -----CCCCEecccCccccccccchhhhcchhHHHcCCe-----E-------EEEeccc----cccc------CCcCHHH
Confidence 345788887776644321 1 11112210 0 0011100 0000 0112488
Q ss_pred HHHHHHhhCCCcEEEEEEc-cccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCcccc-ccccccCCCCCCee
Q 013204 193 LEDLILKEGPETIAAFIAE-PVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGT-MFGCDKYSIKPDLV 269 (447)
Q Consensus 193 le~~l~~~~~~~~a~vi~e-pv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~-~~~~~~~~~~~d~v 269 (447)
|++.+....+ ++|++. +.++. ..+ +++|+++|++||++|++|++|. |+...|. ...+. ..|++
T Consensus 195 le~~l~~~~~---klIi~~~s~~~~---~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~----~aDiv 260 (490)
T 2a7v_A 195 LALTARLFRP---RLIIAGTSAYAR---LID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIV 260 (490)
T ss_dssp HHHHHHHHCC---SEEEECCSSCCS---CCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----TCSEE
T ss_pred HHHHHhhcCC---cEEEEcCCCCCC---ccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC----CCCEE
Confidence 8888764332 355554 44432 333 8999999999999999999985 3211221 11111 25776
Q ss_pred e--ecccCCCcccceeEEEeChh---------------HHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--
Q 013204 270 S--FAKALSSAYMPIGAILVSPE---------------VSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-- 330 (447)
Q Consensus 270 ~--~sK~l~gg~~~~g~~~~~~~---------------~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-- 330 (447)
+ ++|+|+| ++.|+++++++ +.+.++.. ...+...++++..+++..++++.+..
T Consensus 261 ~~S~hK~l~G--p~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~------~~~g~qggp~~~~iaAla~Al~~~~~~~ 332 (490)
T 2a7v_A 261 TTTTHKTLRG--ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFA------VFPSLQGGPHNHAIAAVAVALKQACTPM 332 (490)
T ss_dssp EEESSGGGCS--CSCEEEEEECSEEEEETTTEEEEECCCHHHHHHH------HTTTTCCSCCHHHHHHHHHHHHHHHSHH
T ss_pred EECCcccCcc--ccchheeeccchhcccccccchhhHHHHHHHHHH------hcccCCCCchHHHHHHHHHHHHHHhhhh
Confidence 5 5799976 46788888764 44444421 11111122344445544455655432
Q ss_pred -hcHHHHHHHHHHHHHHhHhhccCCCceeeEee-eeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee---
Q 013204 331 -RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG-TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS--- 405 (447)
Q Consensus 331 -~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--- 405 (447)
+++.+++.++.+++++.|+++ +..++. .+ ...++.+++..... ....+.+.|.+.||.+...
T Consensus 333 ~~~~~~~~~~na~~L~~~L~~~-G~~v~~--~~t~t~lv~vdl~~~g~----------~~~~~~~~L~~~GI~v~~~~~p 399 (490)
T 2a7v_A 333 FREYSLQVLKNARAMADALLER-GYSLVS--GGTDNHLVLVDLRPKGL----------DGARAERVLELVSITANKNTCP 399 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCEEGG--GSCSSSEEEEECTTTTC----------CHHHHHHHHHHTTEECEEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CcEEec--CCCCCeEEEEEeCCCCC----------CHHHHHHHHHhCCeEEecCccC
Confidence 446678888899999999875 322211 11 12345566543221 1445778888999998742
Q ss_pred -------CCEEEEecC----CCCCHHHHHHHHHHHHHHHHH
Q 013204 406 -------GDNIMMSPP----FIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 406 -------g~~iR~~~~----~~~t~e~i~~~~~~l~~~l~~ 435 (447)
.+.||++.+ ..++++|++++++.|.++++.
T Consensus 400 ~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 400 GDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp TCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 257999654 357999999999999888864
No 214
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.73 E-value=2.2e-15 Score=150.63 Aligned_cols=298 Identities=11% Similarity=-0.003 Sum_probs=170.0
Q ss_pred eEEEeCChhhHHHHHHHHHHHHHHhc----CCC------CcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCccee
Q 013204 97 KVFFTNSGSEANDTQVKLVWYYNNAL----GRP------NKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 166 (447)
Q Consensus 97 ~v~~~~sGseA~~~Al~~~~~~~~~~----~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (447)
..+|++|||+||..|+.+++.....+ +.. ..+.+++.+...|.+...+....+... ..
T Consensus 147 ~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~------------~~ 214 (481)
T 4e1o_A 147 GGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKM------------KF 214 (481)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEE------------EE
T ss_pred ceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCce------------EE
Confidence 67999999999999999887542210 110 013355556667776544444333221 12
Q ss_pred cCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh--CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEe
Q 013204 167 TDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIAD 244 (447)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~D 244 (447)
++....++ . ++++|++.+... ....+.+|++....+..|.+.+ +++|.++|++||+++++|
T Consensus 215 v~~~~~~~-----~--------d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~----l~~I~~la~~~~~~lhvD 277 (481)
T 4e1o_A 215 LPVDDNFS-----L--------RGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC----LSELGPICAREGLWLHID 277 (481)
T ss_dssp ECCCTTSC-----C--------CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEE
T ss_pred EEcCCCCc-----C--------CHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC----HHHHHHHHHHcCCeEEee
Confidence 22211111 1 147888887642 1122555666666666777766 999999999999999999
Q ss_pred hhhcCCCccccccccccCCC-CCCeeee--cccCCCcccceeEEEeChh-HHH-HhhhccCCCCc--------c---CcC
Q 013204 245 EVICAFGRLGTMFGCDKYSI-KPDLVSF--AKALSSAYMPIGAILVSPE-VSE-VIHSQSNTLGS--------F---SHG 308 (447)
Q Consensus 245 Ev~~g~g~~g~~~~~~~~~~-~~d~v~~--sK~l~gg~~~~g~~~~~~~-~~~-~~~~~~~~~~~--------~---~~~ 308 (447)
++|.+....+..+.....++ ..|.+++ .|.++++ ...|+++.++. ... .+......... + ...
T Consensus 278 aA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p-~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 356 (481)
T 4e1o_A 278 AAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVH-FDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIP 356 (481)
T ss_dssp CTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSS
T ss_pred hhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCC-CceEEEEEeCHHHHHHHhcCCchhccCcccCCCCCccccccc
Confidence 99976433322222222344 3688876 5988877 57788877654 332 22110000000 0 000
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchH
Q 013204 309 FTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIG 388 (447)
Q Consensus 309 ~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 388 (447)
.+.....+.+.+++..+..-.-++..++..++.+++++.|+++++..++. .....++.+.+.... ...
T Consensus 357 ~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~--~~~~~~v~f~~~~~~----------~~~ 424 (481)
T 4e1o_A 357 LSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPA--KRHLGLVVFRLKGPN----------SLT 424 (481)
T ss_dssp SCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCS--CCCSSEEEEEESSCH----------HHH
T ss_pred CCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec--CCceeEEEEEeCCch----------HHH
Confidence 01112334444444433221123456777778888888887763332221 122344455553211 134
Q ss_pred HHHHHHHHHcCce-EEee---C-CEEEEecC-CCCCHHHHHHHHHHHHHHHHHH
Q 013204 389 AYFGAQCEKHGML-VRVS---G-DNIMMSPP-FIMSPEEVDELISKYGKALKAT 436 (447)
Q Consensus 389 ~~~~~~l~~~Gi~-~~~~---g-~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~~ 436 (447)
..+.++|.++|++ +.+. | ..+|++.. ...|+++|++++++|++.++++
T Consensus 425 ~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l 478 (481)
T 4e1o_A 425 ENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLI 478 (481)
T ss_dssp HHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5688888888844 3332 2 35999965 3458999999999999988764
No 215
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.72 E-value=1.4e-16 Score=155.58 Aligned_cols=317 Identities=12% Similarity=0.045 Sum_probs=183.1
Q ss_pred CCHHHHHHHHHHHhcCCc-ccccCcCCChHHHHHHHHHHHhcCcCCCCeEEE-eCChhhHHHHHHHHHHHHHHhcCCCCc
Q 013204 50 SEPRLVAAATAQLNTLPF-YHSFWNRTTKPSLDLAKELLEMFTASKMAKVFF-TNSGSEANDTQVKLVWYYNNALGRPNK 127 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~-~~sGseA~~~Al~~~~~~~~~~~~~~~ 127 (447)
.+|++++++.+....... .+.. ....+...++.+++++.+.....++++| ++||++|++.+++.+. .+
T Consensus 51 ~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~--------~~- 120 (398)
T 2fyf_A 51 VRLEQLQTLTTTAAALFGTSHRQ-APVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI--------DK- 120 (398)
T ss_dssp CCHHHHHGGGTTTTTTTTSCTTS-HHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC--------SS-
T ss_pred CCHHHHHHHhhcCCCccCcCcCC-HHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc--------CC-
Confidence 578999888763111100 0110 0012345678888888874322358999 9999999999999763 11
Q ss_pred ceEEEEcCCCccchhhhh-cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEE
Q 013204 128 KKFIARQKSYHGSTLIAA-SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIA 206 (447)
Q Consensus 128 ~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a 206 (447)
.++.+...+|+...... ...+ ++. .+..++.++.+. . + .+ + . .+++
T Consensus 121 -gv~~v~~~~~~~~~~~~~~~~~-------~g~---~~~~v~~~~g~~---~----~-------~~----i---~-~~~~ 167 (398)
T 2fyf_A 121 -RSLHLTYGEFSAKFASAVSKNP-------FVG---EPIIITSDPGSA---P----E-------PQ----T---D-PSVD 167 (398)
T ss_dssp -CEEEEECSHHHHHHHHHHHHCT-------TSC---CCEEEECCTTCC---C----C-------CC----C---C-TTCS
T ss_pred -CeEEEeCCHHHHHHHHHHHHhC-------CCC---ceEEEecCCCCC---C----C-------cc----c---c-CCCC
Confidence 23334667776432211 1110 000 011222211000 0 0 00 1 1 2455
Q ss_pred EEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeee--cccCCCcccceeE
Q 013204 207 AFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF--AKALSSAYMPIGA 284 (447)
Q Consensus 207 ~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~--sK~l~gg~~~~g~ 284 (447)
+|++...++.+|.+.+ +++|.++ ||+++|+||+|+.+.. ..... .+|++++ +|.++.++ ++|+
T Consensus 168 ~v~~~~~~nptG~~~~----~~~i~~~---~~~~vivD~a~~~~~~---~~~~~----~~di~~~s~sK~~~~~g-g~g~ 232 (398)
T 2fyf_A 168 VIAWAHNETSTGVAVA----VRRPEGS---DDALVVIDATSGAGGL---PVDIA----ETDAYYFAPQKNFASDG-GLWL 232 (398)
T ss_dssp EEEEESEETTTTEECC----CCCCTTC---C-CEEEEECTTTTTTS---CCCGG----GCSEEEECTTSTTCSCS-SEEE
T ss_pred EEEEeCcCCCcceecc----hHHhhhh---cCCeEEEEeccccCCc---ccCcc----cCcEEEEecCcccCCCC-ceEE
Confidence 6766667777777766 3344443 8999999999984422 11111 2687765 59988763 6899
Q ss_pred EEeChhHHHHhhhcc---CCCCccC----------cCCC-CCCcHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHH
Q 013204 285 ILVSPEVSEVIHSQS---NTLGSFS----------HGFT-YSGHPVSCAVAIEALKIYKER----NIVEQVNKIAPKFQD 346 (447)
Q Consensus 285 ~~~~~~~~~~~~~~~---~~~~~~~----------~~~t-~~~~~~~~~aa~a~l~~~~~~----~~~~~~~~~~~~l~~ 346 (447)
+++++++++.+.... .....+. ...+ ++.+..+++++.++++.+.+. +..++.+++.+++.+
T Consensus 233 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~ 312 (398)
T 2fyf_A 233 AIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYS 312 (398)
T ss_dssp EEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 999999887763210 0000000 0122 345666777777788765433 356777778888888
Q ss_pred hHhhccCCCceeeEe-eeee-EEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee-----CCEEEEecCCCCCH
Q 013204 347 GVKAFSDSPIIGEIR-GTGL-ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----GDNIMMSPPFIMSP 419 (447)
Q Consensus 347 ~L~~l~~~~~~~~~~-~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----g~~iR~~~~~~~t~ 419 (447)
.|+++.+..+..... +.+. ++.+.++... ....+.+.|.++||.+.++ ++.+|+++...+++
T Consensus 313 ~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~ 381 (398)
T 2fyf_A 313 WAQERPYTTPFVTDPGLRSQVVGTIDFVDDV-----------DAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEP 381 (398)
T ss_dssp HHHHSTTEEESCCSGGGBCSSEEEEEECTTS-----------CHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCH
T ss_pred HHHHcCCceeccCChhhcCCcEEEEECCCCC-----------CHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCH
Confidence 887763211111001 1233 6667664311 1456888999999998753 25799999888899
Q ss_pred HHHHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKALKA 435 (447)
Q Consensus 420 e~i~~~~~~l~~~l~~ 435 (447)
+++++++++|++++++
T Consensus 382 e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 382 DDVSALTECVDWVVER 397 (398)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988754
No 216
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.72 E-value=5.3e-15 Score=148.30 Aligned_cols=316 Identities=11% Similarity=0.005 Sum_probs=169.9
Q ss_pred HHHHHHHHhcCcCC--------CCeEEEeCChhhHHHHHHHHHHHHHHh----c-CCC-----Ccce-EEEEcCCCccch
Q 013204 81 DLAKELLEMFTASK--------MAKVFFTNSGSEANDTQVKLVWYYNNA----L-GRP-----NKKK-FIARQKSYHGST 141 (447)
Q Consensus 81 ~l~~~l~~~~~~~~--------~~~v~~~~sGseA~~~Al~~~~~~~~~----~-~~~-----~~~~-vi~~~~~yhg~~ 141 (447)
++.+++++++.... ...++|++|||+||..|+..++..... . |+- .++. |++.++. |.+.
T Consensus 117 ~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~-h~s~ 195 (486)
T 1js3_A 117 VMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQA-HSSV 195 (486)
T ss_dssp HHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTC-CHHH
T ss_pred HHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCC-cHHH
Confidence 44455666653211 246899999999999999887642111 0 100 0122 4444444 4444
Q ss_pred hhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC--CCcEEEEEEccccCCCCC
Q 013204 142 LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG--PETIAAFIAEPVIGAGGV 219 (447)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~~a~vi~epv~~~~G~ 219 (447)
..+....|.. +..++....++ . ++++|++.+.... ...+.+|++...++..|.
T Consensus 196 ~~~~~~~G~~------------v~~v~~d~~~~-----~--------d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~ 250 (486)
T 1js3_A 196 ERAGLIGGVK------------LKAIPSDGKFA-----M--------RASALQEALERDKAAGLIPFFVVATLGTTSCCS 250 (486)
T ss_dssp HHHHHHHTCE------------EEEECCCTTSC-----C--------CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCC
T ss_pred HHHHHhCCCc------------eEEeecCCCCC-----C--------CHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCC
Confidence 3333323322 12222211111 1 1478888876421 112335555555555666
Q ss_pred ccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCC-CCCeeee--cccCCCcccceeEEEeChh-H-HHH
Q 013204 220 IPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSI-KPDLVSF--AKALSSAYMPIGAILVSPE-V-SEV 294 (447)
Q Consensus 220 ~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~-~~d~v~~--sK~l~gg~~~~g~~~~~~~-~-~~~ 294 (447)
+.+ +++|.++|++||+++++|++|.++......+.....++ ..|.+++ +|.++.+ +++|+++.+++ . .+.
T Consensus 251 ~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-~~~G~l~~~~~~~l~~~ 325 (486)
T 1js3_A 251 FDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FDCSAMWVKRRTDLTGA 325 (486)
T ss_dssp BCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESCHHHHHGG
T ss_pred CCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-cceEEEEEeCHHHHHHH
Confidence 655 99999999999999999999986432221111111232 3687775 5988776 68899998754 2 344
Q ss_pred hhhccCCCCc----------cCc---CCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEe
Q 013204 295 IHSQSNTLGS----------FSH---GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR 361 (447)
Q Consensus 295 ~~~~~~~~~~----------~~~---~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~ 361 (447)
+......... +.. ..+.....+++.+++..+..-.-++..++..++.+++.+.|+++++..++. .
T Consensus 326 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~--~ 403 (486)
T 1js3_A 326 FKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCA--E 403 (486)
T ss_dssp GC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECS--C
T ss_pred hcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeC--C
Confidence 3211000000 000 001112234444444333211123445666777888888887753222211 1
Q ss_pred eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE-ee---C-CEEEEec-CCCCCHHHHHHHHHHHHHHHHH
Q 013204 362 GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VS---G-DNIMMSP-PFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 362 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~-~~---g-~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
....++.+.+.... .....+.++|.++|+++. +. + ..+|++. ....|+++|++++++|++.+++
T Consensus 404 ~~~~~v~f~~~~~~----------~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 404 VTLGLVCFRLKGSD----------GLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp CCSSEEEEEESSCH----------HHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CceeEEEEEecChH----------HHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 23444455443210 124568888888886533 21 2 4699995 4457999999999999999988
Q ss_pred HHHH
Q 013204 436 TEER 439 (447)
Q Consensus 436 ~~~~ 439 (447)
+.++
T Consensus 474 ~~~~ 477 (486)
T 1js3_A 474 LLAA 477 (486)
T ss_dssp HHC-
T ss_pred HHhh
Confidence 7654
No 217
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.70 E-value=3.4e-15 Score=148.90 Aligned_cols=298 Identities=11% Similarity=-0.005 Sum_probs=167.4
Q ss_pred eEEEeCChhhHHHHHHHHHHHHHHhc----CCC------CcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCccee
Q 013204 97 KVFFTNSGSEANDTQVKLVWYYNNAL----GRP------NKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 166 (447)
Q Consensus 97 ~v~~~~sGseA~~~Al~~~~~~~~~~----~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (447)
..+|++|||+||..|+..++.....+ +.. ..+.+|+.+...|.+...+....|... ..
T Consensus 141 ~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~------------~~ 208 (475)
T 3k40_A 141 GGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKL------------RS 208 (475)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEE------------EE
T ss_pred CeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCce------------EE
Confidence 68999999999999999887543111 110 012355566677776555444333221 12
Q ss_pred cCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhC--CCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEe
Q 013204 167 TDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG--PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIAD 244 (447)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~D 244 (447)
++.... . .++++|++.+.... ...+.+|++....+..|.+.+ +++|.++|++||+++++|
T Consensus 209 v~~d~~-------------~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~----l~~I~~la~~~~~~lhvD 270 (475)
T 3k40_A 209 VQSENH-------------R-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY----LDECGPVGNKHNLWIHVD 270 (475)
T ss_dssp ECCBTT-------------B-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEE
T ss_pred EECCCC-------------C-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC----HHHHHHHHHHhCCeEEEe
Confidence 222110 0 12488888876431 122455665555666677766 999999999999999999
Q ss_pred hhhcCCCccccccccccCCC-CCCeeeec--ccCCCcccceeEEEeChh-H-HHHhhhccCCCCc--------cCcCCCC
Q 013204 245 EVICAFGRLGTMFGCDKYSI-KPDLVSFA--KALSSAYMPIGAILVSPE-V-SEVIHSQSNTLGS--------FSHGFTY 311 (447)
Q Consensus 245 Ev~~g~g~~g~~~~~~~~~~-~~d~v~~s--K~l~gg~~~~g~~~~~~~-~-~~~~~~~~~~~~~--------~~~~~t~ 311 (447)
++|.+.......+.....++ ..|.++++ |.++++ .++|+++.++. . .+.+......... +...+..
T Consensus 271 ~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p-~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 349 (475)
T 3k40_A 271 AAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVN-FDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIP 349 (475)
T ss_dssp CTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESSGGGC---------------------------C
T ss_pred HHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCC-CceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCccccccc
Confidence 99975322222211112233 36888764 888876 57788887654 3 2222211000000 0000000
Q ss_pred CCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchH
Q 013204 312 SGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIG 388 (447)
Q Consensus 312 ~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 388 (447)
.+-+......+++++.+.. ++..++..++.+++++.|+++++..++. .....++.+.+.... ...
T Consensus 350 ~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~--~~~~~iv~f~~~~~~----------~~~ 417 (475)
T 3k40_A 350 LGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAA--EINMGLVCFRLKGSN----------ERN 417 (475)
T ss_dssp CCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESS--CCBTTEEEEEESSCH----------HHH
T ss_pred CCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEec--CCceEEEEEEeCCch----------HHH
Confidence 1111222333444444333 4456777788888888888763322221 123344455553211 134
Q ss_pred HHHHHHHHHcCceE-Eee---C-CEEEEecC-CCCCHHHHHHHHHHHHHHHHHHH
Q 013204 389 AYFGAQCEKHGMLV-RVS---G-DNIMMSPP-FIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 389 ~~~~~~l~~~Gi~~-~~~---g-~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
..+.++|.++|.+. .+. | ..+|++.. ..+|+++|++++++|++.++++.
T Consensus 418 ~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~ 472 (475)
T 3k40_A 418 EALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEME 472 (475)
T ss_dssp HHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 56888888888653 321 3 45999965 34599999999999999887653
No 218
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.70 E-value=8.5e-16 Score=150.84 Aligned_cols=232 Identities=16% Similarity=0.134 Sum_probs=142.2
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhh---hcccCCc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA---ASLSGLP 151 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~---~~~~~~~ 151 (447)
..+...++++++++++ +.+.+++++||++|+..+++.+. .+++.||+.++.|++..... ....|..
T Consensus 80 ~~p~~~~le~~lA~l~---g~~~~v~~~sG~~Ai~~al~al~--------~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~ 148 (430)
T 3ri6_A 80 SNPTVEDLEQRLKNLT---GALGVLALGSGMAAISTAILTLA--------RAGDSVVTTDRLFGHTLSLFQKTLPSFGIE 148 (430)
T ss_dssp CCHHHHHHHHHHHHHH---TCSEEEEESCHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHTHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHH---CCCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCCchhHHHHHHHHHHHcCCE
Confidence 5677889999999987 34568888999999999998763 34578999999998865321 1111211
Q ss_pred cccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH
Q 013204 152 ALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 231 (447)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~ 231 (447)
+..++.. +++++++.+. +++++|++|..++..|.+.+ +++|.
T Consensus 149 ------------~~~v~~~------------------d~~~l~~ai~----~~t~~v~~e~p~NptG~~~d----l~~i~ 190 (430)
T 3ri6_A 149 ------------VRFVDVM------------------DSLAVEHACD----ETTKLLFLETISNPQLQVAD----LEALS 190 (430)
T ss_dssp ------------EEEECTT------------------CHHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHH
T ss_pred ------------EEEeCCC------------------CHHHHHHhhC----CCCeEEEEECCCCCCCeecC----HHHHH
Confidence 1122221 1366777664 36788899988888887776 99999
Q ss_pred HHHHhcCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccceeEEEe--Ch-hH---------------
Q 013204 232 AVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPIGAILV--SP-EV--------------- 291 (447)
Q Consensus 232 ~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~g~~~~--~~-~~--------------- 291 (447)
++|++||+++|+||+++ .+.. .....+| .|++ +++|.++|++..+|.++. .+ .+
T Consensus 191 ~la~~~g~~livD~a~~-~~~~---~~~~~~g--~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~ 264 (430)
T 3ri6_A 191 KVVHAKGIPLVVDTTMT-PPYL---LEAKRLG--VDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGP 264 (430)
T ss_dssp HHHHTTTCCEEEECTTS-CTTT---CCGGGGT--CSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGG
T ss_pred HHHHHcCCEEEEECCCc-cccc---CChHHcC--CEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhch
Confidence 99999999999999987 2221 1112234 4655 567999874334444443 22 12
Q ss_pred ---HHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCceeeEe-------
Q 013204 292 ---SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR------- 361 (447)
Q Consensus 292 ---~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~------- 361 (447)
++..... .........+++.+..++..++.+. ...++..++.+++.+.|++. |.+..+.
T Consensus 265 ~~~i~~~~~~------~~~~~g~~~~~~~a~l~l~~l~~l~--~r~~~~~~na~~la~~L~~~---p~v~~V~~P~l~~~ 333 (430)
T 3ri6_A 265 MAFLYKARKE------VFQNLGPSLSPHNAYLQSLGLETMA--LRIERSCQNAQELAHWLLSI---PQVKCVNHPSLPDS 333 (430)
T ss_dssp GHHHHHHHHT------HHHHHCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTC---TTCEEEECTTSTTS
T ss_pred hhHHHHHHHH------HHHhcCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHhCC---CCccEEECCCCCCC
Confidence 1111100 0000122345666665555565442 23455566667777777654 3333222
Q ss_pred ----------eeee-EEEEEee
Q 013204 362 ----------GTGL-ILGTEFA 372 (447)
Q Consensus 362 ----------~~g~-~~~i~~~ 372 (447)
|.|. ++++.+.
T Consensus 334 p~~~~~~~~~g~Gg~~lsf~l~ 355 (430)
T 3ri6_A 334 PFYAIAKRQFRYAGSILTFELE 355 (430)
T ss_dssp TTHHHHHHHCSSCCSEEEEECS
T ss_pred ccHHHHHHhCCCCceEEEEEEC
Confidence 3477 8888886
No 219
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.69 E-value=3.7e-15 Score=144.28 Aligned_cols=318 Identities=13% Similarity=0.090 Sum_probs=190.4
Q ss_pred CCHHHHHHHHHHHhcCCcccccCcCCChHHHHHHHHH-HHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 013204 50 SEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKEL-LEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~ 128 (447)
.+|++.+++.+.++...+. ...+...++++++ ++++. ..+++++++||++|+..+++.+. -..++
T Consensus 14 ~~~~i~~a~~~~~~~~~~~-----~~~~~~~~l~~~~~a~~~g--~~~~~v~~~sgt~al~~al~~l~-------~~~Gd 79 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHIYT-----NYGPINQRFEQTIMSGFFQ--NRGAVTTVANATLGLMAAIQLKK-------RKKGK 79 (377)
T ss_dssp CGGGGHHHHHHHHHHTCCS-----SSCHHHHHHHHHHHHHTST--TCSEEEEESCHHHHHHHHHHHHS-------CTTCC
T ss_pred CcHHHHHHHHHHHHcCCcc-----cCCHHHHHHHHHHHHHHhC--CCCeEEEeCCHHHHHHHHHHHcC-------CCCcC
Confidence 4578899999988765322 1245677899999 88863 25689999999999999998751 13457
Q ss_pred eEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCC-CcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEE
Q 013204 129 KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCP-HYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAA 207 (447)
Q Consensus 129 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~ 207 (447)
+||+..+.|.+........+..+. .++.. +.+. .+++++++.+.... ..+++
T Consensus 80 ~Vi~~~~~~~~~~~~~~~~G~~~~-------------~v~~~~~~~~-------------~d~~~l~~~i~~~~-~~tk~ 132 (377)
T 3ju7_A 80 YALMPSFTFPATPLAAIWCGLEPY-------------FIDISIDDWY-------------MDKTVLWDKIEELK-EEVAI 132 (377)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEE-------------EECBCTTTCS-------------BCHHHHHHHHHHHG-GGEEE
T ss_pred EEEECCCCcHHHHHHHHHcCCEEE-------------EEecCCccCC-------------cCHHHHHHHHhcCC-CCceE
Confidence 899999999876544433222111 11111 0000 01377887773211 12666
Q ss_pred EEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccC-CCCCCeeeec----ccCCCcccce
Q 013204 208 FIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKY-SIKPDLVSFA----KALSSAYMPI 282 (447)
Q Consensus 208 vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~-~~~~d~v~~s----K~l~gg~~~~ 282 (447)
|+ |++. .|...+ +++|.++|+ ||+++|.|++|+ +|.. +..... +...|+.++| |.+++| ..
T Consensus 133 v~--~~~~-~G~~~~----~~~i~~la~-~~~~vi~D~a~a-~g~~---~~~~~~g~~~~d~~~~S~~~~K~l~~g--~g 198 (377)
T 3ju7_A 133 VV--PYAT-FGSWMN----LEEYEELEK-KGVPVVVDAAPG-FGLM---NGGMHYGQDFSGMIIYSFHATKPFGIG--EG 198 (377)
T ss_dssp EC--CBCG-GGBCCC----CHHHHHHHH-TTCCBEEECTTC-TTCE---ETTEETTTTCSSEEEEECBTTSSSCCB--SC
T ss_pred EE--EECC-CCCccC----HHHHHHHHh-cCCEEEEECCCc-cCCe---ECCEeccCCCCcEEEEECCCCCcCCCC--Cc
Confidence 66 3333 355554 899999999 999999999997 4422 111122 1225666654 888874 45
Q ss_pred eEEEe-ChhHHHHhhhccCCC-----CccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCC--
Q 013204 283 GAILV-SPEVSEVIHSQSNTL-----GSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-- 354 (447)
Q Consensus 283 g~~~~-~~~~~~~~~~~~~~~-----~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~-- 354 (447)
|+++. ++++.+.+......- .....+..+..+++.++.+++.++.+ +...++.+++.+++.+.|+++...
T Consensus 199 G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~~~~~~~~~~~L~~~~~~~~ 276 (377)
T 3ju7_A 199 GLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKW--DDKLKERTRISEWYKQLLQSNGLMKK 276 (377)
T ss_dssp EEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred EEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 66665 566766655321100 01112234556677777666666543 345677777888888888776321
Q ss_pred CceeeE--eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee--------------------------C
Q 013204 355 PIIGEI--RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS--------------------------G 406 (447)
Q Consensus 355 ~~~~~~--~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------------------------g 406 (447)
+..... .....++.+.+.+.. ....+.+.|.++||.++.. .
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 345 (377)
T 3ju7_A 277 GWQLQKTEAVIQQFMPILCPEEV-----------RNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAK 345 (377)
T ss_dssp TCBCCCCSCBCCSSEEEECCTTS-----------CHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHH
T ss_pred cccCCCCCcceEEEEEEEeCChh-----------hHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHh
Confidence 111110 011112233332211 1456889999999987631 0
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 407 DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+|+......|++|++++++.|++++..
T Consensus 346 ~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 346 RIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp HEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 35899988899999999999999887765
No 220
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.69 E-value=3e-16 Score=151.15 Aligned_cols=330 Identities=12% Similarity=0.067 Sum_probs=188.7
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc-cc---cCc---CCChHHHHHHHHHHHhcCcCCCC-eE-EEeC
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HS---FWN---RTTKPSLDLAKELLEMFTASKMA-KV-FFTN 102 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~---~~~---~~~~~~~~l~~~l~~~~~~~~~~-~v-~~~~ 102 (447)
++.|+|..+. ...+|++++++.+.+.+.... .+ ... ...+...++++++++.+. .+.+ ++ ++++
T Consensus 3 ~~~~l~~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g-~~~~~~~i~~t~ 75 (362)
T 2c0r_A 3 ERAYNFNAGP------AALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLG-NPTGYKVLFIQG 75 (362)
T ss_dssp CCCEECCSSS------CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTT-CCSSEEEEEESS
T ss_pred cceeeccCCC------CCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhC-CCCCcEEEEECC
Confidence 4566665432 236899999999987542110 00 000 012245677788887763 3332 64 6779
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccch-hhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCC
Q 013204 103 SGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGST-LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 181 (447)
Q Consensus 103 sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (447)
||++|+..+++.+. .++++|++.++.+++.. .......|... .++.+....+.. ..+
T Consensus 76 g~t~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~-------------~v~~~~~~~~~~-~~~ 133 (362)
T 2c0r_A 76 GASTQFAMIPMNFL--------KEGQTANYVMTGSWASKALKEAKLIGDTH-------------VAASSEASNYMT-LPK 133 (362)
T ss_dssp HHHHHHHHHHHHHC--------CTTCEEEEEECSHHHHHHHHHHHHHSCEE-------------EEEECGGGTTCS-CCC
T ss_pred CchHHHHHHHHhcC--------CCCCeEEEEecCcHhHHHHHHHHHhCCeE-------------EEeccccccccc-CCC
Confidence 99999999998763 23467877776655542 11111112111 111110000000 000
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccccc
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDK 261 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~ 261 (447)
.++++ + . +++++|++.++++.+|....+ +++| ||+++|+||+|+ +|.. .....
T Consensus 134 --------~~~~~--i---~-~~t~~v~~~~~~n~tG~~~~~---l~~i------~~~~vivD~a~~-~~~~--~~~~~- 186 (362)
T 2c0r_A 134 --------LQEIQ--L---Q-DNAAYLHLTSNETIEGAQFKA---FPDT------GSVPLIGDMSSD-ILSR--PFDLN- 186 (362)
T ss_dssp --------GGGCC--C---C-TTEEEEEEESEETTTTEECSS---CCCC------TTSCEEEECTTT-TTSS--CCCGG-
T ss_pred --------HHHcc--c---C-CCcCEEEEeCCcCccceeccc---cccc------CCCEEEEEChhh-ccCC--ccchh-
Confidence 01111 1 2 356667766666667764222 4444 899999999997 4322 11111
Q ss_pred CCCCCCeee--ecccCCCcccceeEEEeChhHHHHhhhccCCCCcc-------CcCCCCCCcHHHHHHHHHHHHHHhh--
Q 013204 262 YSIKPDLVS--FAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSF-------SHGFTYSGHPVSCAVAIEALKIYKE-- 330 (447)
Q Consensus 262 ~~~~~d~v~--~sK~l~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~t~~~~~~~~~aa~a~l~~~~~-- 330 (447)
.. |+++ ++|.++. .++|++++++++++.+..... ..+ .....++.++.++.++.++++.+.+
T Consensus 187 -~~--d~~~~s~~K~~g~--~G~G~l~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~ 259 (362)
T 2c0r_A 187 -QF--GLVYAGAQKNLGP--SGVTVVIVREDLVAESPKHLP--TMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERG 259 (362)
T ss_dssp -GC--SEEEEETTTTTCC--SSCEEEEEEGGGSSSCCTTSC--GGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTT
T ss_pred -HC--cEEEEeccccccC--cCcEEEEEcHHHHhhccccCc--hHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhC
Confidence 12 7664 6798863 458999999988766542100 000 0122346677788888888887654
Q ss_pred --hcHHHHHHHHHHHHHHhHhhccCC-CceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC
Q 013204 331 --RNIVEQVNKIAPKFQDGVKAFSDS-PIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG 406 (447)
Q Consensus 331 --~~~~~~~~~~~~~l~~~L~~l~~~-~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g 406 (447)
++..++.+++++++++.|+++... ...... ...+.++.+.+.... ....+.+.|.++||.+.++.
T Consensus 260 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~L~~~gi~~~~g~ 328 (362)
T 2c0r_A 260 GLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEE-----------LEKEFVKASEQEGFVGLKGH 328 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHH-----------HHHHHHHHHHHTTEESCBCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCCcc-----------hHHHHHHHHHHCCCeeccCC
Confidence 345677777888888888776211 111100 112334445443210 24568888999999876542
Q ss_pred ---CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 407 ---DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 ---~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+|+++...+++++++++++.|++.+++
T Consensus 329 ~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 329 RSVGGLRASIYNAVPYESCEALVQFMEHFKRS 360 (362)
T ss_dssp TTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 46999988888999999999999988764
No 221
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.69 E-value=3.4e-16 Score=152.49 Aligned_cols=277 Identities=12% Similarity=0.087 Sum_probs=158.8
Q ss_pred HHHHHHHHHhcC----cCCC-CeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcccc
Q 013204 80 LDLAKELLEMFT----ASKM-AKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154 (447)
Q Consensus 80 ~~l~~~l~~~~~----~~~~-~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 154 (447)
.++.+.+++++. .... +++++++|+++|+..+++.+... |+.+...|++.+|.|.++.......+.... .
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~----Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~-~ 145 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSL----ARSQPVSVVAAAPFYSTYVEETTYVRSGMY-K 145 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHT----SSSSSEEEEECSSCCTHHHHHHHTTCBTTE-E
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcCC----CCCCcceEEEcCCCchhHHHHHHHcCCeEE-E
Confidence 556666666542 1123 58999999999999999876421 111112899999999887544433221110 0
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVV 234 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~ 234 (447)
...+. +.++ .++...++++.|.|++ |.+.. +|++
T Consensus 146 ----------~~~d~---------------------~~l~------~~~~k~v~l~~p~NPt-G~~~~------~l~~-- 179 (391)
T 3bwn_A 146 ----------WEGDA---------------------WGFD------KKGPYIELVTSPNNPD-GTIRE------TVVN-- 179 (391)
T ss_dssp ----------EEEES---------------------TTCC------CCSCEEEEEESSCTTT-CCCCC------CCC---
T ss_pred ----------ecCCH---------------------HHcC------CCCCEEEEECCCCCCC-chhHH------HHHH--
Confidence 00110 1111 1223334455555555 44442 2333
Q ss_pred HhcC--CEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcCC
Q 013204 235 KKYD--ILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHGF 309 (447)
Q Consensus 235 ~~~g--~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 309 (447)
++|+ +++|.||+|.. + ....... ....+++ +|||.++..++++|++++ ++++++.+... ....
T Consensus 180 ~~~~~~~~ii~De~y~~-~---~~~~l~~-~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~-------~~~~ 247 (391)
T 3bwn_A 180 RPDDDEAKVIHDFAYYW-P---HYTPITR-RQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEY-------IIVN 247 (391)
T ss_dssp ----CCCEEEEECTTCS-T---TTSCCCC-CBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHH-------HHHH
T ss_pred HhhcCCCEEEEeCCCCC-C---CCCcccc-CCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHH-------hccc
Confidence 2255 99999999962 2 1111111 1112333 689988754499999997 88888877632 1112
Q ss_pred CCCCcHHHHHHHHHHHHHHh------------hhcHHHHHHHHHHHHHHhHhhccCCCcee---e--------EeeeeeE
Q 013204 310 TYSGHPVSCAVAIEALKIYK------------ERNIVEQVNKIAPKFQDGVKAFSDSPIIG---E--------IRGTGLI 366 (447)
Q Consensus 310 t~~~~~~~~~aa~a~l~~~~------------~~~~~~~~~~~~~~l~~~L~~l~~~~~~~---~--------~~~~g~~ 366 (447)
+++.+.+++.++.++|+... -++..+.++++.+.+.+.|+++....+.. . ....|.+
T Consensus 248 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~ 327 (391)
T 3bwn_A 248 SIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAF 327 (391)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSE
T ss_pred ccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceE
Confidence 35567888888888886432 12345566667777777776652111100 0 1122445
Q ss_pred EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee------CCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 367 LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS------GDNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 367 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+.+.+.. .+.+.+.++||.+.++ .+.+|++ +..++++|++++++|++++++
T Consensus 328 ~~~~~~~~~--------------~~~~~l~~~gV~v~pg~~fg~~~~~iRis--~~~~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 328 AWLGTKEET--------------DLVSELRRHKVMSRAGERCGSDKKHVRVS--MLSREDVFNVFLERLANMKLI 386 (391)
T ss_dssp EEEEESSSC--------------CHHHHHHHTTEECEEGGGGTCCTTEEEEE--SCSCHHHHHHHHHHHHSCC--
T ss_pred EEecCCcHH--------------HHHHHHHHCCEEEccCCCCCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHHh
Confidence 666665311 1556778899999985 3579999 446999999999999988754
No 222
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.67 E-value=2.1e-15 Score=148.14 Aligned_cols=297 Identities=12% Similarity=-0.019 Sum_probs=167.0
Q ss_pred CCHHHHHHHHHHHhc-CC-cccccCcCCChHHHHHHHHHHHhcCcCCCCeEEE---eCChhhHHHHHHHHHHHHHHhcCC
Q 013204 50 SEPRLVAAATAQLNT-LP-FYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFF---TNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~---~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
+++++++++.+.... .. ........+.....++++.+++.+. .+...+ ++||++|++.+++.+.
T Consensus 36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g---~~~~~~~i~~~sGt~Ai~~al~al~-------- 104 (431)
T 3ht4_A 36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFG---AEAGLVRPQIISGTHAISTALFGIL-------- 104 (431)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTT---CSEECCBTTSCSHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhC---CCcccccceeeCHHHHHHHHHHHhC--------
Confidence 467888887775321 11 1111122345667789999998873 333333 5699999999998553
Q ss_pred CCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCc
Q 013204 125 PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPET 204 (447)
Q Consensus 125 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~ 204 (447)
..++.|++.++..|+.+...+..++. +...+......+..++....+. .+++++++.+. ++
T Consensus 105 ~~Gd~Vl~~~~~~y~~~~~~~~l~g~--~~~~~~~~G~~~~~v~~~~~~~-------------~d~e~l~~~l~----~~ 165 (431)
T 3ht4_A 105 RPGDELLYITGKPYDTLEEIVGVRGK--GVGSFKEYNIGYNAVPLTEGGL-------------VDFEAVAAAIH----SN 165 (431)
T ss_dssp CTTCEEEECSSSCCTTHHHHTTSSSC--SSSCSGGGTCEEEECCBCTTSS-------------BCHHHHHHHCC----TT
T ss_pred CCCCEEEEeCCCCchhHHHHHhhccc--ccchHHHcCCEEEEeCCCCCCC-------------cCHHHHHhhcC----CC
Confidence 33478888873444555444433322 1111111111122223211110 11367777664 36
Q ss_pred EEEEEEcc-ccCCCCCccCChhHHHHHHHHHHh--cCCEEEEehhhcCCCccccccccccCCCCCCee--eecccCCCcc
Q 013204 205 IAAFIAEP-VIGAGGVIPPPATYFEKVQAVVKK--YDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSSAY 279 (447)
Q Consensus 205 ~a~vi~ep-v~~~~G~~~~~~~~l~~l~~l~~~--~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l~gg~ 279 (447)
+++|++++ .++.+| ...+.+.+++|+++|++ ||+++|+||+|+.+.....+. .++ .|++ +++|.++|++
T Consensus 166 tk~V~i~~sp~np~~-~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~---~~g--~Di~~~S~sK~lgg~~ 239 (431)
T 3ht4_A 166 TKMIGIQRSKGYATR-PSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC---HVG--ADLMAGSLIKNPGGGI 239 (431)
T ss_dssp EEEEEEECSCTTSSS-CCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG---GTT--CSEEEEETTSGGGTTT
T ss_pred CeEEEEECCCCCCCC-CcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc---ccC--CeEEEcCccccCCCCC
Confidence 78888885 333333 34567789999999999 999999999998764333222 123 4665 5789998732
Q ss_pred -cceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccCCCce-
Q 013204 280 -MPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPII- 357 (447)
Q Consensus 280 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~- 357 (447)
.+.|++++++++++.+.......+ .+.+..+++..+.+++..++.+ +...++..++.+++++.|+++. ..+.
T Consensus 240 ~~~GG~v~~~~~li~~l~~~~~~~~---~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g-~~v~p 313 (431)
T 3ht4_A 240 VKTGGYIVGKEQYVEACAYRLTSPG---IGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLG-MNTSP 313 (431)
T ss_dssp CSSCEEEEECHHHHHHHHHHHSCTT---TTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHT-CCEES
T ss_pred CCceEEEEecHHHHHHHHHHhccCC---cccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCc-CEecC
Confidence 456889999999888764211111 1112222121122344445433 3456777788888888888762 1111
Q ss_pred -eeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 358 -GEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 358 -~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
...++.+.++.+.+.+.. ....+.+.|.+..
T Consensus 314 ~~~~~~~~li~~i~l~~~~-----------~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 314 AWNAPRTDLIQSVQFDDKD-----------RMIAFCQAIQYAS 345 (431)
T ss_dssp CTTSCCSSSCCEEECCCHH-----------HHHHHHHHHHHTS
T ss_pred CCCCCCccEEEEEEeCCHH-----------HHHHHHHHHHhcC
Confidence 112234446667665321 2456777777753
No 223
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.66 E-value=9.8e-15 Score=151.35 Aligned_cols=321 Identities=13% Similarity=0.066 Sum_probs=170.5
Q ss_pred hHHHHHHHHHHHhcCcCCCCeEE-EeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc-ccc
Q 013204 77 KPSLDLAKELLEMFTASKMAKVF-FTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALH 154 (447)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~~v~-~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~ 154 (447)
....++++.+++++. .+..+ +++|+++||..++.... ..++.||+..+.|+....+.+..+|.. .+.
T Consensus 173 ~~i~e~e~~lA~~~g---ae~~i~v~nGtt~an~~ai~al~--------~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v 241 (730)
T 1c4k_A 173 GPAVAAEKHAARVYN---ADKTYFVLGGSSNANNTVTSALV--------SNGDLVLFDRNNHKSVYNSALAMAGGRPVYL 241 (730)
T ss_dssp THHHHHHHHHHHHTT---CSEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHTTTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHC---CCcEEEECCHHHHHHHHHHHHhc--------CCCCEEEEcCCchHHHHHHHHHHCCCEEEEE
Confidence 456788888888873 33444 44555599999998763 234678887776655444323334432 111
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh------CCCc-EEEEEEccccCCCCCccCChhHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE------GPET-IAAFIAEPVIGAGGVIPPPATYF 227 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~------~~~~-~a~vi~epv~~~~G~~~~~~~~l 227 (447)
............++. +.+. .+.+++.+... .+.. ..+++++| +. .|.+.+ +
T Consensus 242 ~~~~~~~~i~g~id~-------------e~L~---~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~-~G~v~d----l 299 (730)
T 1c4k_A 242 QTNRNPYGFIGGIYD-------------SDFD---EKKIRELAAKVDPERAKWKRPFRLAVIQLG-TY-DGTIYN----A 299 (730)
T ss_dssp CEEECTTCCEEEECG-------------GGSC---HHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CT-TSEEEC----H
T ss_pred eCCccccCccCCCCH-------------HHHh---hhHHHHHhhcCCcccccccCCCeEEEEECC-CC-CCeecC----H
Confidence 100000000000110 1000 13336666532 1111 23445555 33 566665 9
Q ss_pred HHHHHHHHhcCCEEEEehhhcCC-Cccc--c-cccc--ccCCCC-CC-eee--ecccCCCcccceeEEEeChhHH-----
Q 013204 228 EKVQAVVKKYDILFIADEVICAF-GRLG--T-MFGC--DKYSIK-PD-LVS--FAKALSSAYMPIGAILVSPEVS----- 292 (447)
Q Consensus 228 ~~l~~l~~~~g~~li~DEv~~g~-g~~g--~-~~~~--~~~~~~-~d-~v~--~sK~l~gg~~~~g~~~~~~~~~----- 292 (447)
++|.++|++||+++|+||+|.+. +..+ . .... +.++.. ++ +++ ++|.++|. ...|+++.+++.+
T Consensus 300 ~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~-~~gg~I~v~~~~l~g~~~ 378 (730)
T 1c4k_A 300 HEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGF-SQTSQIHKKDSHIKGQLR 378 (730)
T ss_dssp HHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCC-TTCEEEEEECGGGTTSTT
T ss_pred HHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCC-CCEEEEEecchhhcCccc
Confidence 99999999999999999999632 1111 1 0111 122332 11 554 57998762 1234554433321
Q ss_pred ----HHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhh-ccCCCceee-E---
Q 013204 293 ----EVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKA-FSDSPIIGE-I--- 360 (447)
Q Consensus 293 ----~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~-~--- 360 (447)
..+.. .+....+.++++..+++..++++.+.. .++.++..++.+++++.|++ +.+..+... .
T Consensus 379 ~i~~~~~~~------~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~ 452 (730)
T 1c4k_A 379 YCDHKHFNN------SFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNG 452 (730)
T ss_dssp CCCHHHHHH------HHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETT
T ss_pred ccCHHHHHH------HHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEcccccccc
Confidence 11111 001112344566666666666665543 44667888888889998877 432221110 0
Q ss_pred -----------------------------ee--eee-E-----EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEE
Q 013204 361 -----------------------------RG--TGL-I-----LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR 403 (447)
Q Consensus 361 -----------------------------~~--~g~-~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~ 403 (447)
.+ .+. + +.+..+........+......+..+.+.|.++||++.
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~ 532 (730)
T 1c4k_A 453 KKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPE 532 (730)
T ss_dssp EEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCS
T ss_pred ccccccccccccccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEE
Confidence 00 010 1 2232211000000000000124568889999999988
Q ss_pred eeC-CEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 404 VSG-DNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 404 ~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
..+ ..+|++++..+|++++++++++|.+..+++.
T Consensus 533 ~~~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 533 KSDLNSILFLMTPAETPAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp EECSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 765 5699999999999999999999999887664
No 224
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.62 E-value=5.9e-15 Score=141.58 Aligned_cols=327 Identities=10% Similarity=-0.014 Sum_probs=187.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCccc-ccC--cC----CChHHHHHHHHHHHhcCcCCCCeEEEe-CChhhHHHHHHHHHHHH
Q 013204 47 LGGSEPRLVAAATAQLNTLPFYH-SFW--NR----TTKPSLDLAKELLEMFTASKMAKVFFT-NSGSEANDTQVKLVWYY 118 (447)
Q Consensus 47 lG~~~p~v~~a~~~~~~~~~~~~-~~~--~~----~~~~~~~l~~~l~~~~~~~~~~~v~~~-~sGseA~~~Al~~~~~~ 118 (447)
.+.-+|+|+++|.+.+.+..... +.. .. ..+...+..+.+++++.-.+..+|+|+ .|||++++.+++.+...
T Consensus 21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~ 100 (377)
T 3e77_A 21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGL 100 (377)
T ss_dssp SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGG
T ss_pred cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCC
Confidence 34578999999999886422111 100 11 123345566677777743233578884 79999999999865311
Q ss_pred HHhcCCCCcceEEEEcCCCccchhhhh-cccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHH
Q 013204 119 NNALGRPNKKKFIARQKSYHGSTLIAA-SLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLI 197 (447)
Q Consensus 119 ~~~~~~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l 197 (447)
.+++++++...+.++...... ...|... ..++++..+.. .+ ++++..+
T Consensus 101 ------~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~------------~~~~~~~~~~~-~~------------~~~~~~i 149 (377)
T 3e77_A 101 ------KAGRCADYVVTGAWSAKAAEEAKKFGTIN------------IVHPKLGSYTK-IP------------DPSTWNL 149 (377)
T ss_dssp ------STTCEEEECCCSHHHHHHHHHHTTTSEEE------------ECSCCCSSSCS-CC------------CGGGCCC
T ss_pred ------CCCCeEEEEECCHHHHHHHHHHHHhCCce------------EEeccCCCcCC-CC------------ChHHhcc
Confidence 113567666666655432211 1111110 11111110000 00 1122111
Q ss_pred HhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccC
Q 013204 198 LKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KAL 275 (447)
Q Consensus 198 ~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l 275 (447)
. +++++|.+..+.+..|.+.| + +|+++|+++++|-+|+ +|.. ++..+.++ ++++| |.+
T Consensus 150 ---~-~~t~lV~~~h~et~tG~~~p----i-----i~~~~~~~~~vD~~q~-~g~~--~id~~~~~----~~~~s~~K~~ 209 (377)
T 3e77_A 150 ---N-PDASYVYYCANETVHGVEFD----F-----IPDVKGAVLVCDMSSN-FLSK--PVDVSKFG----VIFAGAQKNV 209 (377)
T ss_dssp ---C-TTCSCEEEESEETTTTEECS----S-----CCCCTTCCEEEECTTT-TTSS--CCCGGGCS----EEEEEGGGTT
T ss_pred ---C-CCccEEEEeCccCchheEch----h-----hhccCCCEEEEEcccc-cCCC--CCchhhcC----EEEEeccccc
Confidence 2 34556666666666788877 3 5889999999999997 5433 33344444 34454 888
Q ss_pred CCcccceeEEEeChhHHHHhhhccCCCCcc------CcCCC-CCCcHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHH
Q 013204 276 SSAYMPIGAILVSPEVSEVIHSQSNTLGSF------SHGFT-YSGHPVSCAVAIEALKIYKER----NIVEQVNKIAPKF 344 (447)
Q Consensus 276 ~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~t-~~~~~~~~~aa~a~l~~~~~~----~~~~~~~~~~~~l 344 (447)
|+ .++|+++.++++.+.+... .+..+ ....+ .+++..++.+..++++.+.+. ...++.+++.+++
T Consensus 210 -gp-~G~g~l~~~~~~l~~~~~~--~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l 285 (377)
T 3e77_A 210 -GS-AGVTVVIVRDDLLGFALRE--CPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTI 285 (377)
T ss_dssp -SC-TTCEEEEEETTSCSCCCTT--SCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred -CC-CccEEEEEcHHHHhhccCC--CCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 55 7899999988875443211 00000 01112 345566666677888877654 3556777788888
Q ss_pred HHhHhhccCCCc-eeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---CEEEEecCCCCCH
Q 013204 345 QDGVKAFSDSPI-IGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---DNIMMSPPFIMSP 419 (447)
Q Consensus 345 ~~~L~~l~~~~~-~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~~iR~~~~~~~t~ 419 (447)
++.|+++++..+ .... ...+.++.+.++..... ..+...+...+.++||.+.++. +.+|+++...+|+
T Consensus 286 ~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~-------~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~ 358 (377)
T 3e77_A 286 YEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKGD-------DALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTI 358 (377)
T ss_dssp HHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTCC-------HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCH
T ss_pred HHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCCc-------hhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCH
Confidence 888877632211 1011 11233456666542110 0122346777888999886652 4599999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013204 420 EEVDELISKYGKALKA 435 (447)
Q Consensus 420 e~i~~~~~~l~~~l~~ 435 (447)
+||+++++.|++++++
T Consensus 359 edId~l~~al~~~~~~ 374 (377)
T 3e77_A 359 EDVQKLAAFMKKFLEM 374 (377)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 225
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.60 E-value=5e-15 Score=142.91 Aligned_cols=331 Identities=11% Similarity=0.008 Sum_probs=181.0
Q ss_pred CEEEecCCccccccCCCCCHHHHHHHHHHHhcCCcc-cc------cCcCCChHHHHHHHHHHHhcCcCCCCeEEE-eCCh
Q 013204 33 KKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HS------FWNRTTKPSLDLAKELLEMFTASKMAKVFF-TNSG 104 (447)
Q Consensus 33 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~------~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~-~~sG 104 (447)
+.|+|..+.. .-+|+|+++|.+.+.+.... .+ ......+...+..+.+++++.-.+..+|+| ++||
T Consensus 27 ~~yl~~agpt------~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~ 100 (386)
T 3qm2_A 27 QVFNFSSGPA------MLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGG 100 (386)
T ss_dssp CCEECCSSSC------CCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCT
T ss_pred cCccccCCCC------CCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCc
Confidence 4688865442 26899999998776542111 00 000112344566677888774323357888 6899
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhc-ccCCccccCCCCCCCCcceecCCC--CcccCCCCCCC
Q 013204 105 SEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAAS-LSGLPALHQKFDLPAPFVLHTDCP--HYWRYAHPGET 181 (447)
Q Consensus 105 seA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 181 (447)
|++++.+++.+. ..++++++...+.++....... ..| . +..++++ .......
T Consensus 101 T~a~n~ai~~l~--------~~gd~v~~~~~~~~~~~~~~~a~~~G-~------------v~~v~~~~~~~G~~~~---- 155 (386)
T 3qm2_A 101 RGQFAGVPLNLL--------GDKTTADYVDAGYWAASAIKEAKKYC-A------------PQIIDAKITVDGKRAV---- 155 (386)
T ss_dssp THHHHHHHHHHC--------TTCCEEEEEESSHHHHHHHHHHTTTS-E------------EEEEECEEEETTEEEE----
T ss_pred hHHHHHHHHhcc--------CCCCeEEEEeCCHHHHHHHHHHHHhC-C------------eEEEecCcccCCCCCC----
Confidence 999999998653 2235666555555554222111 111 1 1122221 0000000
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCc-cCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccc
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVI-PPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD 260 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~-~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~ 260 (447)
++++++.+. +++++|++..+.+..|.+ .| +++|. +|+++++|-+|+ +|.. +...+
T Consensus 156 --------~~~~~~~l~----~~t~lV~~~h~et~tG~~i~p----i~~i~-----~g~~~~vDa~qs-~g~~--pidv~ 211 (386)
T 3qm2_A 156 --------KPMREWQLS----DNAAYLHYCPNETIDGIAIDE----TPDFG-----PEVVVTADFSST-ILSA--PLDVS 211 (386)
T ss_dssp --------CCGGGCCCC----TTCSCEEECSEETTTTEECCC----CCCCC-----TTCCEEEECTTT-TTSS--CCCGG
T ss_pred --------chHHHhhcC----CCCcEEEEECCcCCcCEecCc----hhhhc-----CCCEEEEEcccc-cCCC--CCCcc
Confidence 022332222 345667777777777875 55 44443 799999999997 5433 33344
Q ss_pred cCCCCCCeeeec--ccCCCcccceeEEEeChhHHHHhhhccCCC---Ccc-CcCC-CCCCcHHHHHHHHHHHHHHhhh--
Q 013204 261 KYSIKPDLVSFA--KALSSAYMPIGAILVSPEVSEVIHSQSNTL---GSF-SHGF-TYSGHPVSCAVAIEALKIYKER-- 331 (447)
Q Consensus 261 ~~~~~~d~v~~s--K~l~gg~~~~g~~~~~~~~~~~~~~~~~~~---~~~-~~~~-t~~~~~~~~~aa~a~l~~~~~~-- 331 (447)
.++ ++++| |.+ |+ .++|+++.++++.+.+....... +.. .... ..+++..++.+..++++.+.+.
T Consensus 212 ~~~----~~~~s~hK~l-GP-~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG 285 (386)
T 3qm2_A 212 RYG----VIYAGAQKNI-GP-AGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGG 285 (386)
T ss_dssp GCS----EEEEETTTTT-CC-TTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTH
T ss_pred ccC----EEEEeccccc-CC-CccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 443 44444 888 45 68999999988754332110000 000 0011 1133444555566677766543
Q ss_pred --cHHHHHHHHHHHHHHhHhhccCCCceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC--
Q 013204 332 --NIVEQVNKIAPKFQDGVKAFSDSPIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-- 406 (447)
Q Consensus 332 --~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-- 406 (447)
+..++.+++.+++++.|+++.-+...... .....++.+.+++.. ....+...|.++||.+..+.
T Consensus 286 ~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~f~~~~~~-----------~~~~~~~~L~~~gI~~~~g~~~ 354 (386)
T 3qm2_A 286 VAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVPFQLADNT-----------LDKVFLEESFAAGLHALKGHRV 354 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEEEEESSGG-----------GHHHHHHHHHHTTEECCBCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEEEECCCcc-----------ccHHHHHHHHHCCCEEeCCCCC
Confidence 35567777888888888776110111111 112235566665311 12356677889999876542
Q ss_pred -CEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 013204 407 -DNIMMSPPFIMSPEEVDELISKYGKALKA 435 (447)
Q Consensus 407 -~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 435 (447)
+.+|+++...+|++|||++++.|++..++
T Consensus 355 ~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 355 VGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 45999999999999999999999988754
No 226
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.59 E-value=1.1e-13 Score=134.70 Aligned_cols=256 Identities=12% Similarity=0.057 Sum_probs=149.1
Q ss_pred CCHHHHHHHHHHHh-cCCc-ccccCcCCChHHHHHHHHHHHhcCcCCCCeEEE---eCChhhHHHHHHHHHHHHHHhcCC
Q 013204 50 SEPRLVAAATAQLN-TLPF-YHSFWNRTTKPSLDLAKELLEMFTASKMAKVFF---TNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 50 ~~p~v~~a~~~~~~-~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~---~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
+++++++++.+... ...+ .++..........+|++.+++++ +.+..++ ++||++|+..++....
T Consensus 30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~---g~e~alv~p~~~sGt~Ai~~al~all-------- 98 (409)
T 3jzl_A 30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVF---KTEAALVRPQIISGTHAISTVLFGIL-------- 98 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHH---TCSEEEEETTSCSHHHHHHHHHHHHC--------
T ss_pred hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHh---CCCcEEEECCCccHHHHHHHHHHHhc--------
Confidence 45778888877541 1111 11112234455778899999887 3445666 8999999999998653
Q ss_pred CCcceEEEEc-CCCccchhhhhcccCC-ccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCC
Q 013204 125 PNKKKFIARQ-KSYHGSTLIAASLSGL-PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGP 202 (447)
Q Consensus 125 ~~~~~vi~~~-~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~ 202 (447)
..++.||+.+ +.|.+..... ...+. .......+ ..+..++....+. .+++++++.+.
T Consensus 99 ~~GD~Vl~~~~~~y~~~~~~~-~~~g~~~~~l~~~G---~~~~~v~~~~~g~-------------~d~e~l~~ai~---- 157 (409)
T 3jzl_A 99 RPDDELLYITGQPYDTLEEIV-GIRKQGQGSLKDFH---IGYSSVPLLENGD-------------VDFPRIAKKMT---- 157 (409)
T ss_dssp CTTCEEEECSSSCCTTHHHHH-TSSSSSSSCTGGGT---CEEEECCCCTTSC-------------CCHHHHHHHCC----
T ss_pred CCCCEEEEeCCCCcHhHHHHH-hcccchhhHHHHcC---CEEEEeCCCCCCC-------------cCHHHHHHhcc----
Confidence 3357888887 7776654221 11110 00000001 1112233211110 01366776654
Q ss_pred CcEEEEEEcc----ccCCCCCccCChhHHHHHHHHHHh--cCCEEEEehhhcCCCccccccccccCCCCCCee--eeccc
Q 013204 203 ETIAAFIAEP----VIGAGGVIPPPATYFEKVQAVVKK--YDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKA 274 (447)
Q Consensus 203 ~~~a~vi~ep----v~~~~G~~~~~~~~l~~l~~l~~~--~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~ 274 (447)
+++++|++++ +++..|.+.+ +++|.++|++ ||+++|+||+|..+.....+ .....|++ +++|.
T Consensus 158 ~~tklV~i~~s~g~p~nptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~~~~~p-----~~~g~Div~~S~sK~ 228 (409)
T 3jzl_A 158 PKTKMIGIQRSRGYADRPSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFVEYQEP-----PEVGADIIAGSLIKN 228 (409)
T ss_dssp TTEEEEEEECSCTTSSSCCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTTSSCCS-----GGGTCSEEEEETTSG
T ss_pred CCCeEEEEECCCCCCCCCcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccccccCCc-----cccCCeEEEECcccc
Confidence 3578899998 7777776654 9999999999 99999999998743211111 12235777 47899
Q ss_pred CCCcccc-eeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc
Q 013204 275 LSSAYMP-IGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 275 l~gg~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l 351 (447)
++|++.+ .|++++++++++.+........ + +.+..+.+..+.+++..++.+ +...++..++..++++.|+++
T Consensus 229 lgg~~~~~GG~v~~~~~li~~l~~~~~~~~-~--g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~ 301 (409)
T 3jzl_A 229 PGGGLAKTGGYIAGKEALVDLCGYRLTTPG-I--GREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEF 301 (409)
T ss_dssp GGTTTCSSCEEEEECHHHHHHHHHHHSCTT-T--GGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT
T ss_pred CCccCCceEEEEEeCHHHHHHHHHHhcccc-c--cccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhC
Confidence 9876433 5889999999888864211111 0 011122221123344444432 345677778888888888887
No 227
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.59 E-value=1.5e-13 Score=143.64 Aligned_cols=321 Identities=12% Similarity=0.046 Sum_probs=174.4
Q ss_pred ChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCc-ccc
Q 013204 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALH 154 (447)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~ 154 (447)
.....+..+.+++.+.. ...+++++|+++||..++..+. .++++||+..+.|+..... +...|.. .+.
T Consensus 204 ~g~v~~~ee~la~l~G~--d~~i~~~~Gtt~a~~~~i~al~--------~~GD~Vlv~~~~h~s~~~~-~~~~G~~~v~v 272 (755)
T 2vyc_A 204 TGAFGESEKYAARVFGA--DRSWSVVVGTSGSNRTIMQACM--------TDNDVVVVDRNCHKSIEQG-LMLTGAKPVYM 272 (755)
T ss_dssp CHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHH-HHHHCCEEEEE
T ss_pred ccHHHHHHHHHHHHhCC--CceEEECCcHHHHHHHHHHHhc--------CCCCEEEECCCchHHHHHH-HHHcCCEEEEE
Confidence 34556677777777631 2345555555788999998763 3357888887776554433 3333322 111
Q ss_pred CCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCC------CcE-EEEEEccccCCCCCccCChhHH
Q 013204 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGP------ETI-AAFIAEPVIGAGGVIPPPATYF 227 (447)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~------~~~-a~vi~epv~~~~G~~~~~~~~l 227 (447)
... . +.+.. ......+. .++++|++.+..... ..+ .+++++| + ..|.+.+ +
T Consensus 273 ~~~-~-----------~~~g~-~g~i~~~~---~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n-~~G~v~d----l 330 (755)
T 2vyc_A 273 VPS-R-----------NRYGI-IGPIYPQE---MQPETLQKKISESPLTKDKAGQKPSYCVVTNC-T-YDGVCYN----A 330 (755)
T ss_dssp CCC-B-----------CTTSC-BCCCCGGG---GSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-C-TTSEEEC----H
T ss_pred eCC-C-----------Ccccc-ccccCcCC---CCHHHHHHHHHhCccccccccCCCeEEEEECC-C-CCceecC----H
Confidence 100 0 00000 00000000 013778888764211 112 3555555 4 3566665 9
Q ss_pred HHHHHHHHhcCCEEEEehhhcCCCcccccc--ccccCCCCCCe------e--eecccCCCcccceeEEEeChh---H-HH
Q 013204 228 EKVQAVVKKYDILFIADEVICAFGRLGTMF--GCDKYSIKPDL------V--SFAKALSSAYMPIGAILVSPE---V-SE 293 (447)
Q Consensus 228 ~~l~~l~~~~g~~li~DEv~~g~g~~g~~~--~~~~~~~~~d~------v--~~sK~l~gg~~~~g~~~~~~~---~-~~ 293 (447)
++|.++|++||+++++||+|.+.-..+..+ .....+...|+ + +++|.++|. ...|+++.+++ + ..
T Consensus 331 ~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~-~~g~~i~~~~~~~~i~~~ 409 (755)
T 2vyc_A 331 KEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNAL-SQASYIHVREGRGAINFS 409 (755)
T ss_dssp HHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCC-TTCEEEEEECCBTCCCHH
T ss_pred HHHHHHHHHcCCEEEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccCc-CCeeeeeecCcccccCHH
Confidence 999999999999999999997431122111 01112200233 3 467998763 23566666543 2 12
Q ss_pred HhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccC---------CCcee--e
Q 013204 294 VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSD---------SPIIG--E 359 (447)
Q Consensus 294 ~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~---------~~~~~--~ 359 (447)
.+.. .+....+.+++...+++..++++.+.. +++.++..++.+++++.|+++.+ ..+.. .
T Consensus 410 ~~~~------~~~~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~ 483 (755)
T 2vyc_A 410 RFNQ------AYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEV 483 (755)
T ss_dssp HHHH------HHHHTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSE
T ss_pred HHHH------HHHHhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchh
Confidence 2221 111122445667777776777776654 34678888888999998887632 11110 0
Q ss_pred Eee---------------------------------------ee------eEEEEEeecCCCCCCCCCCCcchHHHHHHH
Q 013204 360 IRG---------------------------------------TG------LILGTEFADNKSPNEPFPPEWGIGAYFGAQ 394 (447)
Q Consensus 360 ~~~---------------------------------------~g------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (447)
+.+ .| ..+.+.......+ ..+.....-+..+.+.
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~-G~~~~~g~~~~~l~~~ 562 (755)
T 2vyc_A 484 VTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGED-GELEETGVPAALVTAW 562 (755)
T ss_dssp EECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTT-SSBCSSCCCHHHHHHH
T ss_pred ccccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCC-CCccccCCcHHHHHHH
Confidence 100 01 1222322211100 0000000113467788
Q ss_pred HHHcCceEEeeC-CEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 013204 395 CEKHGMLVRVSG-DNIMMSPPFIMSPEEVDELISKYGKALKATE 437 (447)
Q Consensus 395 l~~~Gi~~~~~g-~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 437 (447)
|.++||.+...+ +.+|+.+++..|++++++++++|.+..+...
T Consensus 563 L~~~gI~~e~~~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~~ 606 (755)
T 2vyc_A 563 LGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYD 606 (755)
T ss_dssp HHTTTCCCSEECSSEEEEECCTTCCTTTTHHHHHHHHHHHHHHH
T ss_pred HHHCCCEEeecCCCeEEEEECCCCCHHHHHHHHHHHHHHHHhhh
Confidence 888999886554 6699999999999999999999998876653
No 228
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.59 E-value=4.7e-14 Score=134.83 Aligned_cols=317 Identities=10% Similarity=0.005 Sum_probs=180.9
Q ss_pred CCHHHHHHHHHHHhcCCcc-cccC--cC----CChHHHHHHHHHHHhcCcCCCCeEEE-eCChhhHHHHHHHHHHHHHHh
Q 013204 50 SEPRLVAAATAQLNTLPFY-HSFW--NR----TTKPSLDLAKELLEMFTASKMAKVFF-TNSGSEANDTQVKLVWYYNNA 121 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~~~-~~~~--~~----~~~~~~~l~~~l~~~~~~~~~~~v~~-~~sGseA~~~Al~~~~~~~~~ 121 (447)
-+|+|+++|.+.+.+.... .+.. .. ..+...+..+.+++++...+..+|+| ++|||++++.+++.+.
T Consensus 16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~----- 90 (361)
T 3m5u_A 16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA----- 90 (361)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-----
T ss_pred CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-----
Confidence 5899999999987542111 0000 00 12344556677777774323458888 9999999999998653
Q ss_pred cCCCCcceEEEEcCCCccchhhhhc-ccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhh
Q 013204 122 LGRPNKKKFIARQKSYHGSTLIAAS-LSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 200 (447)
Q Consensus 122 ~~~~~~~~vi~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 200 (447)
++ ++++.+..+.+++...... ..|.. +..++++....+. .. .++ + +.
T Consensus 91 ---~~-~~~~~i~~~~~~~~~~~~a~~~G~~------------v~~~~~~~~g~~~---~~--------~~~-~--l~-- 138 (361)
T 3m5u_A 91 ---LN-GVCEYANTGVWTKKAIKEAQILGVN------------VKTVASSEESNFD---HI--------PRV-E--FS-- 138 (361)
T ss_dssp ---CS-SCEEEEECSHHHHHHHHHHHHTTCC------------EEEEEECTTTTSC---SC--------CCC-C--CC--
T ss_pred ---CC-CeEEEEeCCHHHHHHHHHHHHcCCc------------eEEEecccCcCCC---cC--------Chh-h--cC--
Confidence 22 3333222333344211111 11111 1112211110000 00 011 1 21
Q ss_pred CCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCccccccccccCCCCCCeeeec--ccCCCc
Q 013204 201 GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSA 278 (447)
Q Consensus 201 ~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v~~s--K~l~gg 278 (447)
+ ++++|.+..+.+..|.+.+. +++ +|+++++|-+|+ +|.. ++..+ ..|++++| |.+ |+
T Consensus 139 -~-~t~lv~~~~~e~~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~~--~id~~----~~d~~~~s~~K~~-gp 198 (361)
T 3m5u_A 139 -D-NADYAYICSNNTIYGTQYQN---------YPK-TKTPLIVDASSD-FFSR--KVDFS----NIALFYGGVQKNA-GI 198 (361)
T ss_dssp -T-TSSEEEEESEETTTTEECSS---------CCC-CSSCEEEECGGG-TTSS--CCCCT----TEEEEEEETTTTS-SC
T ss_pred -C-CCCEEEEeCCCCCcceeCCc---------ccc-cCCEEEEEcccc-cCCC--CCCcc----cCCEEEEechhcc-CC
Confidence 2 34556665555556776552 344 499999999998 5433 22222 24788776 888 45
Q ss_pred ccceeEEEeChhHHHHhhhccCCCCcc------CcCCC-CCCcHHHHHHHHHHHHHHhhh-c---HHHHHHHHHHHHHHh
Q 013204 279 YMPIGAILVSPEVSEVIHSQSNTLGSF------SHGFT-YSGHPVSCAVAIEALKIYKER-N---IVEQVNKIAPKFQDG 347 (447)
Q Consensus 279 ~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~t-~~~~~~~~~aa~a~l~~~~~~-~---~~~~~~~~~~~l~~~ 347 (447)
.++|+++.++++.+.+.... .+..+ ....+ .+++..++.+..++++.+.+. + ..++.+++.+++++.
T Consensus 199 -~G~g~l~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~ 276 (361)
T 3m5u_A 199 -SGLSCIFIRKDMLERSKNKQ-IPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYEC 276 (361)
T ss_dssp -TTCEEEEEEHHHHHHHHTCC-CCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred -CccEEEEEcHHHHhhhcCCC-CCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 68999999999887765310 00000 01122 345666777777888887654 3 456777788888888
Q ss_pred HhhccCC-CceeeE-eeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC---CEEEEecCCCCCHHHH
Q 013204 348 VKAFSDS-PIIGEI-RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG---DNIMMSPPFIMSPEEV 422 (447)
Q Consensus 348 L~~l~~~-~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g---~~iR~~~~~~~t~e~i 422 (447)
|+++.+. ...... .....++.+.+++... ....+...|.++||.+..+. +.+|+++...+|++||
T Consensus 277 L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~----------~~~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edI 346 (361)
T 3m5u_A 277 IDLSNGFYKGHADKKDRSLMNVSFNIAKNKD----------LEPLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQV 346 (361)
T ss_dssp HHTSTTSEEESSCGGGBCSSEEEEEESSCTT----------HHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHH
T ss_pred HHHCCCeeeccCCHHHcCCeEEEEECCCchh----------hhHHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHH
Confidence 8776321 111111 1112345566553110 12357788889999987552 4599999999999999
Q ss_pred HHHHHHHHHHHHH
Q 013204 423 DELISKYGKALKA 435 (447)
Q Consensus 423 ~~~~~~l~~~l~~ 435 (447)
+++++.|++..++
T Consensus 347 d~l~~al~~~~~~ 359 (361)
T 3m5u_A 347 KTLCEFMKEFQGK 359 (361)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988765
No 229
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.57 E-value=3.2e-14 Score=140.03 Aligned_cols=324 Identities=13% Similarity=0.007 Sum_probs=178.8
Q ss_pred CCEEEecCCccccccCCCCCHHHHHHHHHHHhc-CCcc--cccCc-CCChHHHHHHHHHHHhcC-----cCCCCeEEEeC
Q 013204 32 GKKYLDSLAGLWCTALGGSEPRLVAAATAQLNT-LPFY--HSFWN-RTTKPSLDLAKELLEMFT-----ASKMAKVFFTN 102 (447)
Q Consensus 32 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~~--~~~~~-~~~~~~~~l~~~l~~~~~-----~~~~~~v~~~~ 102 (447)
.+..+||..+.. .++ .++.+.+++.+.+.. .... +.... + .....+|.+.+++++. ..+.+++++++
T Consensus 55 ~~~~i~l~~g~~--~~~-~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G-~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~ 130 (427)
T 2hox_A 55 QGCSADVASGDG--LFL-EEYWKQHKEASAVLVSPWHRMSYFFNPVS-NFISFELEKTIKELHEVVGNAAAKDRYIVFGV 130 (427)
T ss_dssp TTCCEECCSCCC--GGG-HHHHTTSHHHHCEEECTTTTCSSSCSSCC-TTCCHHHHHHHHHHHHHHTCBCCTTCEEEEES
T ss_pred CCceEEecCcCC--CCC-CCHHHHHhHHhhhhcCCcccccCCCCCCC-ccchHHHHHHHHHHHHHhCCcCCCCCEEEEeC
Confidence 445677765532 232 345666777766632 1111 21111 1 0113455556655542 13567999999
Q ss_pred ChhhHHHHHHHHHHHHHHhcC-CCCcceEEEEcCCCccchhhhhcccCCccccCCCCCCCCcceecCCCCcccCCCCCCC
Q 013204 103 SGSEANDTQVKLVWYYNNALG-RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 181 (447)
Q Consensus 103 sGseA~~~Al~~~~~~~~~~~-~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (447)
|+++|+..+++.+.... ..+ -..++.|++.+|.|.++.......+.... . ..++
T Consensus 131 G~~~al~~~~~~l~~~~-~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~-~----------~~~d------------- 185 (427)
T 2hox_A 131 GVTQLIHGLVISLSPNM-TATPDAPESKVVAHAPFYPVFREQTKYFDKKGY-V----------WAGN------------- 185 (427)
T ss_dssp HHHHHHHHHHHHHSCCT-TTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTE-E----------EEEE-------------
T ss_pred CHHHHHHHHHHHHhhcc-ccccCCCCCEEEEeCCCcccHHHHHHHcCCeee-e----------ecCC-------------
Confidence 99999999998761000 000 03457899999999877554443322211 0 0011
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcccccccccc
Q 013204 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDK 261 (447)
Q Consensus 182 ~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~g~~~~~~~ 261 (447)
+++|++.+. ++...++++.|.|++| .+.+ +.+ + ++..|.||.+-+ . ......
T Consensus 186 --------~~~l~~~~~---~~~k~v~l~~p~NPtG-~~~~--~~l-------~--~~~~i~d~~~~~----~-~~s~~~ 237 (427)
T 2hox_A 186 --------AANYVNVSN---PEQYIEMVTSPNNPEG-LLRH--AVI-------K--GCKSIYDMVYYW----P-HYTPIK 237 (427)
T ss_dssp --------GGGGTTCSC---GGGEEEEEESSCTTTC-CCCC--CSS-------T--TCEEEEECTTCS----T-TTSCCC
T ss_pred --------HHHHHHhhc---CCceEEEEcCCCCCcc-cccH--HHH-------c--CCCEEEeecccC----C-CCCccc
Confidence 144444332 2233445555655554 4443 322 2 456778877632 1 111111
Q ss_pred CCCCCCee--eecccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhh--------
Q 013204 262 YSIKPDLV--SFAKALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE-------- 330 (447)
Q Consensus 262 ~~~~~d~v--~~sK~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-------- 330 (447)
.....+++ +|||.++..++++|++++ ++++++.+... ....+++.+.+++.++.++|+...+
T Consensus 238 ~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~ 310 (427)
T 2hox_A 238 YKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNY-------MTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGT 310 (427)
T ss_dssp SCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHH-------HHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cCCCceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHH-------HHhcCCCCCHHHHHHHHHHhhcchhhhccccch
Confidence 11123444 578988754489999999 58888887632 1222445677777777777764211
Q ss_pred -hc----HHHHHHHHHHHHHHhHhhccCCCc-----ee------e-EeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHH
Q 013204 331 -RN----IVEQVNKIAPKFQDGVKAFSDSPI-----IG------E-IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGA 393 (447)
Q Consensus 331 -~~----~~~~~~~~~~~l~~~L~~l~~~~~-----~~------~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 393 (447)
++ ..+.++++.+++.+.|+++.+..+ .. . ...-|.++.+.+..+. ..+.+
T Consensus 311 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~-------------~~~~~ 377 (427)
T 2hox_A 311 MRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEE-------------DKDCY 377 (427)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGG-------------GCSHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCcH-------------HHHHH
Confidence 12 345666666777777765422111 00 1 1222566677775311 12455
Q ss_pred HHH-HcCceEEee------CCEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 013204 394 QCE-KHGMLVRVS------GDNIMMSPPFIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 394 ~l~-~~Gi~~~~~------g~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 434 (447)
.++ ++||.+.++ .+.+|++. ..++++|++++++|.++++
T Consensus 378 ~ll~~~gI~v~pg~~f~~~~~~~Ris~--~~~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 378 QTFQNGRINTQNGVGFEASSRYVRLSL--IKTQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp HHHHHTTEECEEGGGGTSCTTEEEEEC--SSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCEEEcCCCccCCCCCEEEEEe--cCCHHHHHHHHHHHHHHHh
Confidence 554 789999875 25799994 5699999999999988874
No 230
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.55 E-value=2e-13 Score=134.91 Aligned_cols=291 Identities=11% Similarity=0.084 Sum_probs=158.5
Q ss_pred ChHHHHHHHHHHHhcCcCCCCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhh---cccCCcc
Q 013204 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAA---SLSGLPA 152 (447)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~---~~~~~~~ 152 (447)
.+...++.+++++++. .+.+++++++|++.+++.++..++ . .++++||+.++.|+....... ...|...
T Consensus 107 ~~~~~~~~~~la~~~g-~~~~~i~~~~g~taa~ea~~~a~~-~------~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v 178 (438)
T 1wyu_A 107 LQATFEYQTMIAELAG-LEIANASMYDGATALAEGVLLALR-E------TGRMGVLVSQGVHPEYRAVLRAYLEAVGAKL 178 (438)
T ss_dssp HHHHHHHHHHHHHHHT-SSEECSCBSSHHHHHHHHHHHHHH-H------HTCCEEEEETTSCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhC-CCccceEEeCcHHHHHHHHHHHHh-c------CCCCEEEEcCccCHhHHHHHHHHHHHCCCEE
Confidence 3456788888888873 344456788988855555544332 1 124678887766654432211 1122111
Q ss_pred ccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHH
Q 013204 153 LHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQA 232 (447)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~ 232 (447)
..++. +.+..+ +++ + . +++++|+++.. +..|.+.+ +++|.+
T Consensus 179 ------------~~v~~-~~~~~d----------------~~~-i---~-~~t~~v~i~~p-n~tG~~~~----l~~i~~ 219 (438)
T 1wyu_A 179 ------------LTLPL-EGGRTP----------------LPE-V---G-EEVGAVVVQNP-NFLGALED----LGPFAE 219 (438)
T ss_dssp ------------EEECC-BTTBCC----------------CCC-C---C-TTEEEEEEESS-CTTSBCCC----HHHHHH
T ss_pred ------------EEEcC-cCCccC----------------HHH-h---C-CCeEEEEEECC-CCCeEEec----HHHHHH
Confidence 11121 111100 111 1 1 24666666665 66677765 999999
Q ss_pred HHHhcCCEEEEehh-hcCCCccccccccccCCCCCCeeeec-ccCC----CcccceeEEEeChhHHHHhhhcc-----CC
Q 013204 233 VVKKYDILFIADEV-ICAFGRLGTMFGCDKYSIKPDLVSFA-KALS----SAYMPIGAILVSPEVSEVIHSQS-----NT 301 (447)
Q Consensus 233 l~~~~g~~li~DEv-~~g~g~~g~~~~~~~~~~~~d~v~~s-K~l~----gg~~~~g~~~~~~~~~~~~~~~~-----~~ 301 (447)
+|++||+++|+|-- ++ +|..... .. ..+|++++| |.++ .+++++|++++++++++.+.... ..
T Consensus 220 la~~~g~~vivd~d~~a-~g~~~~~---~~--~g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~ 293 (438)
T 1wyu_A 220 AAHGAGALFVAVADPLS-LGVLKPP---GA--YGADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDV 293 (438)
T ss_dssp HHHHTTCEEEEECCTTG-GGTBCCH---HH--HTCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBT
T ss_pred HHHHcCCEEEEEechhh-ccCcCCC---cc--CCCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceecccccc
Confidence 99999999995522 22 3222111 11 237888774 6533 22258899999998776652100 00
Q ss_pred CC--cc------------CcCCCCCC---cHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccCCCceeeEe
Q 013204 302 LG--SF------------SHGFTYSG---HPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR 361 (447)
Q Consensus 302 ~~--~~------------~~~~t~~~---~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~ 361 (447)
.+ .+ ....+... +.+...++...+..+.. ++..++..++.+++.+.|+++.+..+...
T Consensus 294 ~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-- 371 (438)
T 1wyu_A 294 EGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTP-- 371 (438)
T ss_dssp TSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSC--
T ss_pred CCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCC--
Confidence 00 00 00112221 22322222222443332 33556677778888888877633222111
Q ss_pred eeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceE--Eee----CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 013204 362 GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLV--RVS----GDNIMMSPPFIMSPEEVDELISKYGKAL 433 (447)
Q Consensus 362 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~--~~~----g~~iR~~~~~~~t~e~i~~~~~~l~~~l 433 (447)
...+..+.+.... ....+.++|.++||.+ .++ .+.+|+++...+|++++++++++|++++
T Consensus 372 -~~~~~~~~~~~~~-----------~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 372 -KPFFNEFALALPK-----------DPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp -SSBCSEEEEECSS-----------CHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred -CCeEEEEEEeCCC-----------CHHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 1122122222111 1456889999999998 433 3679999988899999999999998764
No 231
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.55 E-value=1.3e-12 Score=127.63 Aligned_cols=290 Identities=12% Similarity=0.052 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHH--hcCCcccccCcCCChHHHHHHHHHHHhcCcCCCCeEEE---eCChhhHHHHHHHHHHHHHHhcCCC
Q 013204 51 EPRLVAAATAQL--NTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFF---TNSGSEANDTQVKLVWYYNNALGRP 125 (447)
Q Consensus 51 ~p~v~~a~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~---~~sGseA~~~Al~~~~~~~~~~~~~ 125 (447)
.++|++++.+.. +.................++++.+++++ +.+..++ ++||++|+..++.... .
T Consensus 45 ~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~---g~e~alv~p~~~sGt~Ai~~al~all--------~ 113 (427)
T 3i16_A 45 QLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVF---NTESALVRPHFVNGTHALGAALFGNL--------R 113 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHH---TCSEEEEETTCCSHHHHHHHHHHHHC--------C
T ss_pred HHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHh---CCcceEEeCCCccHHHHHHHHHHHHh--------C
Confidence 367777777643 1111111112234445778889999987 3345566 8999999999988653 3
Q ss_pred CcceEEEEc-CCCccchhhh-hcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCC
Q 013204 126 NKKKFIARQ-KSYHGSTLIA-ASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPE 203 (447)
Q Consensus 126 ~~~~vi~~~-~~yhg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~ 203 (447)
+++.||+.+ +.|++..... ...+.........+ ..+..++....+. .+++++++.+.. ..
T Consensus 114 pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G---~~~~~v~~~~~g~-------------~D~e~l~~~l~~--~~ 175 (427)
T 3i16_A 114 PGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFG---INYKQVDLKEDGK-------------PNLEEIEKVLKE--DE 175 (427)
T ss_dssp TTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGT---CEEEECCCCTTSS-------------CCHHHHHHHHHT--CT
T ss_pred CCCEEEEeCCCccHHHHHHHhccccchHHHHHHcC---CEEEEecCccCCC-------------cCHHHHHHHhhC--CC
Confidence 357888887 7777654221 10000000000011 1112222211100 114778877763 13
Q ss_pred cEEEEEEcc----ccCCCCCccCChhHHHHHHHHHHh--cCCEEEEehhhcCCCccccccccccCCCCCCee--eecccC
Q 013204 204 TIAAFIAEP----VIGAGGVIPPPATYFEKVQAVVKK--YDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKAL 275 (447)
Q Consensus 204 ~~a~vi~ep----v~~~~G~~~~~~~~l~~l~~l~~~--~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~l 275 (447)
++++|++++ +++..|.+.+ +++|+++|++ ||+++|+||+|..+.....+. ....|++ +++|.+
T Consensus 176 ~tklV~i~~s~~~p~nptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~~p~-----~~gaDiv~~S~sK~l 246 (427)
T 3i16_A 176 SITLVHIQRSTGYGWRRALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT-----DVGADLIAGSLIKNI 246 (427)
T ss_dssp TEEEEEEECSCCSSSSCCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGG-----GGTCSEEEEETTSGG
T ss_pred CCEEEEEEcCCCCCCCCcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccCCcc-----ccCCeEEEecCcccC
Confidence 578888988 6777776644 9999999999 999999999997442121111 1235766 468999
Q ss_pred CCcc-cceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHH-HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhccC
Q 013204 276 SSAY-MPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVS-CAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD 353 (447)
Q Consensus 276 ~gg~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~ 353 (447)
+|++ ...|++++++++++.+........ .+....+. +. +..++..++.+ +...++..++..++.+.|+++..
T Consensus 247 gg~g~~~gG~i~~~~~li~~l~~~~~~~~---~g~~~~~~-~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~ 320 (427)
T 3i16_A 247 GGGIAPTGGYLAGTKDCIEKTSYRLTVPG---IGGECGST-FGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELAGF 320 (427)
T ss_dssp GTTTCCSCEEEEECHHHHHHHHHHHSCTT---TGGGCCCC-TTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCceEEEEEECHHHHHHHHHhcccCc---cCccCCcc-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhCCC
Confidence 8754 346889999999988864211100 00111110 11 22233333322 34567777888888888887621
Q ss_pred CCceeeEeeee-----eEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcC
Q 013204 354 SPIIGEIRGTG-----LILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHG 399 (447)
Q Consensus 354 ~~~~~~~~~~g-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 399 (447)
.+ .++.+ .++.+.+.+.. ....|++.|....
T Consensus 321 -~V---~p~~~~~~~~~i~~i~l~~~~-----------~~~~f~~~l~~~~ 356 (427)
T 3i16_A 321 -EV---MPKYDEKRSDIIQSIKFNDKD-----------KLIEFCKGIQTGS 356 (427)
T ss_dssp -EE---ESCTTSCCSSSCEEEECSSHH-----------HHHHHHHHHHHTC
T ss_pred -ee---cCCCCCCCccEEEEEEECCHH-----------HHHHHHHHHhhcC
Confidence 11 11122 25566664321 3456777887753
No 232
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.53 E-value=1.5e-12 Score=127.20 Aligned_cols=258 Identities=11% Similarity=0.030 Sum_probs=147.9
Q ss_pred CCHHHHHHHHHHHhcCC--cccccCcCCChHHHHHHHHHHHhcCcCCCCeEEE---eCChhhHHHHHHHHHHHHHHhcCC
Q 013204 50 SEPRLVAAATAQLNTLP--FYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFF---TNSGSEANDTQVKLVWYYNNALGR 124 (447)
Q Consensus 50 ~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~---~~sGseA~~~Al~~~~~~~~~~~~ 124 (447)
++++|++++.+...... ..............++++.+++++ +.+..++ ++||++|+..++....
T Consensus 45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~---g~e~alv~p~~~sGt~A~~~al~all-------- 113 (427)
T 3hvy_A 45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIF---NTESAFVRPHFVNGTHAIGAALFGNL-------- 113 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHH---TCSEEEEETTCCSHHHHHHHHHHHTC--------
T ss_pred hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHh---CCCceEEeCCCCcHHHHHHHHHHHhc--------
Confidence 44777777776532100 011111223445778889999887 4455666 8999999999988653
Q ss_pred CCcceEEEEc-CCCccchhhh-hcccCCccccCCCCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCC
Q 013204 125 PNKKKFIARQ-KSYHGSTLIA-ASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGP 202 (447)
Q Consensus 125 ~~~~~vi~~~-~~yhg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~ 202 (447)
.+++.||+.+ +.|++..... .............+ ..+..++. +.+. .+++++++.+...
T Consensus 114 ~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G---~~~~~v~~-~~~~-------------~d~e~l~~~i~~~-- 174 (427)
T 3hvy_A 114 RPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYG---VKYKMVDL-KDGK-------------VDINTVKEELKKD-- 174 (427)
T ss_dssp CTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGT---CEEEECCC-BTTB-------------CCHHHHHHHHHHC--
T ss_pred CCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcC---CEEEEecC-CCCC-------------cCHHHHHHHhhCC--
Confidence 3457888888 8887764211 00000000000001 11122222 1100 1137788877631
Q ss_pred CcEEEEEEcc----ccCCCCCccCChhHHHHHHHHHHh--cCCEEEEehhhcCCCccccccccccCCCCCCee--eeccc
Q 013204 203 ETIAAFIAEP----VIGAGGVIPPPATYFEKVQAVVKK--YDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKA 274 (447)
Q Consensus 203 ~~~a~vi~ep----v~~~~G~~~~~~~~l~~l~~l~~~--~g~~li~DEv~~g~g~~g~~~~~~~~~~~~d~v--~~sK~ 274 (447)
.++++|++++ +++..|.+.+ +++|+++|++ ||+++++||+|..+.....+. ....|++ +++|.
T Consensus 175 ~~tklV~i~~s~gyp~nptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~-----~~gaDiv~~S~sK~ 245 (427)
T 3hvy_A 175 DSIKLIHIQRSTGYGWRKSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEKEPT-----DVGADIIAGSLIKN 245 (427)
T ss_dssp TTEEEEEEESSCCSSSSCCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGG-----GGTCSEEEEETTSG
T ss_pred CCCEEEEEECCCCCCCCccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCCCCc-----ccCCeEEEECCccc
Confidence 3578889988 6666665544 9999999999 899999999997442121111 1235776 57899
Q ss_pred CCCcc-cceeEEEeChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhHhhc
Q 013204 275 LSSAY-MPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF 351 (447)
Q Consensus 275 l~gg~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l 351 (447)
++|++ ...|++++++++++.+.......+ .+.+.++.+..+..++..++.. +...++..++..++++.|+++
T Consensus 246 lgg~g~~~GG~i~~~~~li~~l~~~~~~~~---~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~ 318 (427)
T 3hvy_A 246 IGGGIATTGGYIAGKEEYVTQATFRVTVPG---IGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELA 318 (427)
T ss_dssp GGTTTCCSCEEEEECHHHHHHHHHHHSCTT---TGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccceEEEEEECHHHHHHHHHHhhcCC---cccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhC
Confidence 98754 345788899999988864211111 0111111111133333444432 345677778888888888876
No 233
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.48 E-value=3.9e-12 Score=130.88 Aligned_cols=316 Identities=14% Similarity=0.129 Sum_probs=177.2
Q ss_pred CChHHHHHHHHHHHhcCcCCCCeEEEeCCh-hhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCC-cc
Q 013204 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSG-SEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGL-PA 152 (447)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~sG-seA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~ 152 (447)
+.....++++++++++ +.++++|.++| +.||..++..+. .+++.||+..++| .+...++..+|. +.
T Consensus 193 ~~g~i~eaE~~lA~~f---Ga~~a~~v~nGts~An~~ai~al~--------~pGD~VLv~r~~H-~S~~~~l~lsGa~pv 260 (715)
T 3n75_A 193 HSGPHKEAEQYIARVF---NADRSYMVTNGTSTANKIVGMYSA--------PAGSTILIDRNCH-KSLTHLMMMSDVTPI 260 (715)
T ss_dssp TBTHHHHHHHHHHHHH---TCSEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEESSCC-HHHHHHHHHSCCEEE
T ss_pred CcHHHHHHHHHHHHHh---CCCCceEECcHHHHHHHHHHHHhC--------CCCCEEEECCCcc-HHHHHHHHHcCCEEE
Confidence 4445678888999987 45677777777 599988888763 3346777765554 554444444443 32
Q ss_pred ccCCCCCCCCcceecCCCCcccCCCCC-CChhHHHHHHHHHHHHHHHhhCC-Cc-EEEEEEccccCCCCCccCChhHHHH
Q 013204 153 LHQKFDLPAPFVLHTDCPHYWRYAHPG-ETEEEYSTRLANNLEDLILKEGP-ET-IAAFIAEPVIGAGGVIPPPATYFEK 229 (447)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~le~~l~~~~~-~~-~a~vi~epv~~~~G~~~~~~~~l~~ 229 (447)
+..... . .+..+. .+.+. .+.++|++.+..... +. .++|+++| +..|.+.+ +++
T Consensus 261 ~v~~~~-~-------------~~gi~~~i~~~~---~d~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d----l~~ 317 (715)
T 3n75_A 261 YFRPTR-N-------------AYGILGGIPQSE---FQHATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDF 317 (715)
T ss_dssp EECCCB-C-------------TTCCBCCCCGGG---GSHHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC----HHH
T ss_pred EEeccc-c-------------ccccccCccccc---CCHHHHHHHHhhCcCccCceEEEEECC--CCCCccCC----HHH
Confidence 221100 0 000000 00000 013788888875321 11 14666677 55677766 899
Q ss_pred HHHHHHhcCCEEEEehhhcCCCccccccc-ccc--CCCCCCee-----eecccCCCcccceeEEEeChhH-HHHhhhccC
Q 013204 230 VQAVVKKYDILFIADEVICAFGRLGTMFG-CDK--YSIKPDLV-----SFAKALSSAYMPIGAILVSPEV-SEVIHSQSN 300 (447)
Q Consensus 230 l~~l~~~~g~~li~DEv~~g~g~~g~~~~-~~~--~~~~~d~v-----~~sK~l~gg~~~~g~~~~~~~~-~~~~~~~~~ 300 (447)
|.++|++++ +++||+|.+....+..+. ... .+..+|++ +++|+++|- -..|++.++.++ .+.+..
T Consensus 318 I~ela~~~~--livDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gl-tqgs~i~v~~~i~~~~~~~--- 391 (715)
T 3n75_A 318 IKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAF-SQASMIHVKGDVNEETFNE--- 391 (715)
T ss_dssp HHHHCCCSE--EEEECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCC-TTCEEEEEESCCCHHHHHH---
T ss_pred HHHHhCcCc--EEEccccccccccCCccccccccccCcCCCEEEEEEecccccccCC-CCeeEEEeCchhhHHHHHH---
Confidence 999998774 799999974311222111 111 12235754 467998862 134677665543 222321
Q ss_pred CCCccCcCCCCCCcHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHhHhhccC------CCcee--eEee-------
Q 013204 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSD------SPIIG--EIRG------- 362 (447)
Q Consensus 301 ~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~------~~~~~--~~~~------- 362 (447)
.+....|.+++++.+++..++++.++. +++.+++.++.+++++.|+++.. ..+.. .+..
T Consensus 392 ---~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (715)
T 3n75_A 392 ---AYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLR 468 (715)
T ss_dssp ---HHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECC
T ss_pred ---HHHhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccC
Confidence 112234667788888888888887753 45778899999999999987731 00000 0000
Q ss_pred ------------eee-E-----EEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEeeC-CEEEEecCCCCCHHHHH
Q 013204 363 ------------TGL-I-----LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-DNIMMSPPFIMSPEEVD 423 (447)
Q Consensus 363 ------------~g~-~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~g-~~iR~~~~~~~t~e~i~ 423 (447)
.+. + +.+....-.. ...+.....-+..+.+.|.++||.+--.+ ..+-+..+...|+++++
T Consensus 469 ~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~-~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~ 547 (715)
T 3n75_A 469 SDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEK-DGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKAL 547 (715)
T ss_dssp TTCCTTCCTTCCSSSEEECTTEEEEECSCBCT-TSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHH
T ss_pred cccccccccccccCcccCCCeEEEEEcCCCCC-CCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHH
Confidence 000 0 1111111000 00000001113457778888999887554 56777777889999999
Q ss_pred HHHHHHHHHHHH
Q 013204 424 ELISKYGKALKA 435 (447)
Q Consensus 424 ~~~~~l~~~l~~ 435 (447)
+++++|.+.-+.
T Consensus 548 ~L~~aL~~~~~~ 559 (715)
T 3n75_A 548 SLLRALTDFKRA 559 (715)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998876543
No 234
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.46 E-value=1.6e-11 Score=117.74 Aligned_cols=295 Identities=15% Similarity=0.127 Sum_probs=170.6
Q ss_pred CCeEEEeCChhhHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCC-ccccCCCCCCCCcceecCCCCcc
Q 013204 95 MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGL-PALHQKFDLPAPFVLHTDCPHYW 173 (447)
Q Consensus 95 ~~~v~~~~sGseA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
....++.+++|-++.+++..+.... +++.+.||+ ....|-+.+.++.+.|. |.+..+.... ....+
T Consensus 134 ~~~~flVnGsTgg~lamilaa~r~~----rpg~d~VIv-pRn~HKSv~kAliL~Gl~Pv~V~p~~d~--~~~~i------ 200 (501)
T 3hl2_A 134 VANCFVVPMATGMSLTLCFLTLRHK----RPKAKYIIW-PRIDQKSCFKSMITAGFEPVVIENVLEG--DELRT------ 200 (501)
T ss_dssp CCEEEEESSCHHHHHHHHHHHHHHH----CTTCCEEEE-ECCCCHHHHHHHHHTTCEEEEECEEEET--TEEEE------
T ss_pred CCcEEEECcHHHHHHHHHHHHcCcc----cCCCCEEEE-ecchHHHHHHHHHHcCCeEEEEeeeecc--cccCC------
Confidence 3456666666656666666554321 123355665 77899998888887775 3332211000 00111
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhcCCCcc
Q 013204 174 RYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~g~g~~ 253 (447)
+++.+++++.+.+++.+++|+..+.+..++...+ +++|+++|++||+++++||+|.+.-..
T Consensus 201 ---------------d~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~ 261 (501)
T 3hl2_A 201 ---------------DLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSK 261 (501)
T ss_dssp ---------------CHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHH
T ss_pred ---------------CHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhh
Confidence 1488999998776577888888776554333333 999999999999999999998643211
Q ss_pred ccccccccCCC-CCCeeeec--ccCCCccccee--EEEe-ChhHHHHhhhccCCCCccCcCCCCCCcHHHHHHHHHHHHH
Q 013204 254 GTMFGCDKYSI-KPDLVSFA--KALSSAYMPIG--AILV-SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI 327 (447)
Q Consensus 254 g~~~~~~~~~~-~~d~v~~s--K~l~gg~~~~g--~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~ 327 (447)
...+..+.+.. ..|+++.| |.+- .|+| .++. ++++++.+... +. ++.++.|.. ..+.++..
T Consensus 262 ~~~lp~sA~~~GrAD~vVqS~HK~ll---vpIGG~ii~~~d~e~l~~~~~~------yP--Gr~S~Spsl--dl~~tLL~ 328 (501)
T 3hl2_A 262 CMHLIQQGARVGRIDAFVQSLDKNFM---VPVGGAIIAGFNDSFIQEISKM------YP--GRASASPSL--DVLITLLS 328 (501)
T ss_dssp HHHHHHHHHHHSCCCEEEEEHHHHHC---CCSSCEEEEESCHHHHHHHHHT------SC--SCBCSHHHH--HHHHHHHH
T ss_pred hhhhHHHHHhcCCCcEEEecccccce---eecCceEEEeCCHHHHHHHHHh------CC--CCCCCcHHH--HHHHHHHH
Confidence 11111111222 48999888 5332 2332 3333 56677776531 11 233334432 23334443
Q ss_pred Hhh---hcHHHHHHHHHHHHHHhHhhc-cCCC-ceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCce-
Q 013204 328 YKE---RNIVEQVNKIAPKFQDGVKAF-SDSP-IIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGML- 401 (447)
Q Consensus 328 ~~~---~~~~~~~~~~~~~l~~~L~~l-~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~- 401 (447)
+.. .++.++..++.++|++.|+++ ..++ .+...+....-+++.+...... .......+...|..++|-
T Consensus 329 lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~------~~~~~t~~gs~Lf~r~vsG 402 (501)
T 3hl2_A 329 LGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEH------RDKAVTQLGSMLFTRQVSG 402 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTT------TSCHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEeccccccc------ccccHHHHHHHHHhcCCCc
Confidence 333 445677778889999999887 3232 2222222223334555432111 011244577888877653
Q ss_pred --EEee--------------C--------CEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013204 402 --VRVS--------------G--------DNIMMSPPFIMSPEEVDELISKYGKALKATEERV 440 (447)
Q Consensus 402 --~~~~--------------g--------~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 440 (447)
+.+. | .++-+.....++++|||.++++|++++.+++++.
T Consensus 403 ~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~~ 465 (501)
T 3hl2_A 403 ARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKER 465 (501)
T ss_dssp CEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred ceeecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 2111 1 4577777788999999999999999999887644
No 235
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.38 E-value=2e-10 Score=111.49 Aligned_cols=311 Identities=12% Similarity=0.089 Sum_probs=167.9
Q ss_pred HHHHHHHHHHhcCcCCCCeEEEeCChh-hHHHHHHHHHHHHHHhcCCCCcceEEEEcCCCccchhhhhcccCCcc-ccCC
Q 013204 79 SLDLAKELLEMFTASKMAKVFFTNSGS-EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPA-LHQK 156 (447)
Q Consensus 79 ~~~l~~~l~~~~~~~~~~~v~~~~sGs-eA~~~Al~~~~~~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~-~~~~ 156 (447)
...+.+++.+++.-......++++++| .++..++..++.. . .+.+.||+. ..-|-+...++...|... +...
T Consensus 100 e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~----~-~~~~~viv~-r~aHkSv~kAl~l~Gl~p~~v~~ 173 (450)
T 3bc8_A 100 TNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK----R-PKAKYIIWP-RIDQKSCFKSMVTAGFEPVVIEN 173 (450)
T ss_dssp HHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHH----C-TTCCEEEEE-CCCCHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchh----h-cCCCEEEEE-CCcHHHHHHHHHHcCCeeEEEEe
Confidence 335566666665323334557888887 5556566566542 1 112455555 559999888888777532 2110
Q ss_pred CCCCCCcceecCCCCcccCCCCCCChhHHHHHHHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHh
Q 013204 157 FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKK 236 (447)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~ 236 (447)
. +.++.+ ..+++.|++++.+..++.+++|+..|.+...|.+.+ +++|+++|++
T Consensus 174 ~----------~~~~~~-------------~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~ 226 (450)
T 3bc8_A 174 V----------LEGDEL-------------RTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICAN 226 (450)
T ss_dssp E----------EETTEE-------------ECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHH
T ss_pred e----------ecCccC-------------CcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHH
Confidence 0 000000 011488999997765457888888887665454544 9999999999
Q ss_pred cCCEEEEehhhcCCCccccccccccCCC-CCCeeeec--ccCCCcccceeEEEe-ChhHHHHhhhccCCCCccCcCCCCC
Q 013204 237 YDILFIADEVICAFGRLGTMFGCDKYSI-KPDLVSFA--KALSSAYMPIGAILV-SPEVSEVIHSQSNTLGSFSHGFTYS 312 (447)
Q Consensus 237 ~g~~li~DEv~~g~g~~g~~~~~~~~~~-~~d~v~~s--K~l~gg~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~ 312 (447)
||++|++||+|.+.-+....+..+.+.. ..|++++| |.+... .+.+++.. +++..+.+... +. + ..+
T Consensus 227 ~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~-~~~~~l~~rd~~~~~~~~~~------~~-g-~~s 297 (450)
T 3bc8_A 227 YDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVP-VGGAIIAGFNEPFIQDISKM------YP-G-RAS 297 (450)
T ss_dssp HTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCC-SSCEEEEESCHHHHHHHHHH------SC-S-CBC
T ss_pred CCCeEEEECCCchhhhhhHhHHHHHhcccCCCEEEECCccCCCch-hccEEEEecCHHHHHHHHHH------hh-c-CCc
Confidence 9999999999865322111111011111 47999887 655543 35566665 55666665421 11 1 111
Q ss_pred CcHHHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHhHhhcc---CCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcc
Q 013204 313 GHPVSCAVAIEALKIYKERN---IVEQVNKIAPKFQDGVKAFS---DSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWG 386 (447)
Q Consensus 313 ~~~~~~~aa~a~l~~~~~~~---~~~~~~~~~~~l~~~L~~l~---~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~ 386 (447)
.+| ++. .+.++..+..+. +.++..++.+++++.|+++. ...+.. ....+.-..+.+..-... ...
T Consensus 298 ~Sp-sL~-l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~-~~~~~~~~~~~l~~~~~~------~~~ 368 (450)
T 3bc8_A 298 ASP-SLD-VLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQ-TPHNPISLAMTLKTIDGH------HDK 368 (450)
T ss_dssp SHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCC-CTTCSSEEEEECTTTSSS------SSC
T ss_pred ccH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecC-CccCCCcceeeccccccc------ccC
Confidence 233 222 222222222222 23344666788888887774 322221 111110112222210000 000
Q ss_pred hHHHHHHHHHHcCc---eEE-------------e--------e-CCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013204 387 IGAYFGAQCEKHGM---LVR-------------V--------S-GDNIMMSPPFIMSPEEVDELISKYGKALKATEERV 440 (447)
Q Consensus 387 ~~~~~~~~l~~~Gi---~~~-------------~--------~-g~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 440 (447)
....+.-.+...|+ -+. . . ...+-+..++..+++++++++++|++..++.+++.
T Consensus 369 D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~~~ 447 (450)
T 3bc8_A 369 AVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQ 447 (450)
T ss_dssp HHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeEEEecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 12234444555442 221 0 0 15677787889999999999999999987776543
No 236
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.09 E-value=7.7e-08 Score=92.04 Aligned_cols=212 Identities=14% Similarity=0.101 Sum_probs=124.8
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc-CCCccccccccccCCCCCCe
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC-AFGRLGTMFGCDKYSIKPDL 268 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~-g~g~~g~~~~~~~~~~~~d~ 268 (447)
.+.++++....+| ++||+-.+.-. +..+ +++++++|++.|++|++|-.|. |+--.| .+. +-+. ..|+
T Consensus 192 yd~~~~~A~~~kP---klIi~G~SaY~---r~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g-~~p-sP~~-~ADv 259 (490)
T 3ou5_A 192 YNQLALTARLFRP---RLIIAGTSAYA---RLID---YARMREVCDEVKAHLLADMAHISGLVAAK-VIP-SPFK-HADI 259 (490)
T ss_dssp HHHHHHHHHHHCC---SEEEECCSSCC---SCCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTT-SSC-CGGG-TCSE
T ss_pred HHHHHHHHhhcCC---CeEEECCccCc---cccC---HHHHHHHHhhcccEEEechhhhhhhhccc-ccC-Cccc-cceE
Confidence 4788888777665 46666553211 1222 8999999999999999998875 442111 111 1111 2699
Q ss_pred eeec--ccCCCcccceeEEEeCh---------------hHHHHhhhccCCCCccCcCCCCCCcHHHHHHHH-HHHHHHhh
Q 013204 269 VSFA--KALSSAYMPIGAILVSP---------------EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAI-EALKIYKE 330 (447)
Q Consensus 269 v~~s--K~l~gg~~~~g~~~~~~---------------~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~-a~l~~~~~ 330 (447)
||.+ |.|.| .+-|.+++++ ++.+.+... ...+ ..+++.+-..||. .++.....
T Consensus 260 VTtTTHKTLrG--PrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~a------VFPg-~qggp~~h~IAAkAVaf~Ea~~ 330 (490)
T 3ou5_A 260 VTTTTHKTLRG--ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFA------VFPS-LQGGPHNHAIAAVAVALKQACT 330 (490)
T ss_dssp EEEESSSTTCS--CSCEEEEEECSEEEECC--CCEEECCCHHHHHHH------HTTT-TCSSCCHHHHHHHHHHHHHHHS
T ss_pred EeccccccccC--CCceEEEeccccccccccccchhHHHHHHHHHhh------cCcc-ccccchHHHHHHHHHHHHHHHh
Confidence 9876 89988 5778888765 344455431 1112 2222222223333 33443333
Q ss_pred h---cHHHHHHHHHHHHHHhHhhccCCCceeeEeeeeeEEEEEeecCCCCCCCCCCCcchHHHHHHHHHHcCceEEee--
Q 013204 331 R---NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-- 405 (447)
Q Consensus 331 ~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-- 405 (447)
+ +...++.++.+.|.+.|.+. ++.++..-+ ...++.+++..... ......+.|.+.||.+--.
T Consensus 331 p~fk~Ya~qVv~NAkaLA~~L~~~-G~~vvsGgT-dnHlvLvDl~~~g~----------tG~~ae~~Le~agItvNkN~i 398 (490)
T 3ou5_A 331 PMFREYSLQVLKNARAMADALLER-GYSLVSGGT-DNHLVLVDLRPKGL----------DGARAERVLELVSITANKNTC 398 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC-SSSEEEEECGGGTC----------CHHHHHHHHHHTTEECEEECC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCC-CceEEEEeccccCC----------CHHHHHHHHHHcCcEECCCCC
Confidence 3 34567777778888888765 444332111 12344566654321 1445666777889887521
Q ss_pred --------CCEEEEecC----CCCCHHHHHHHHHHHHHHHH
Q 013204 406 --------GDNIMMSPP----FIMSPEEVDELISKYGKALK 434 (447)
Q Consensus 406 --------g~~iR~~~~----~~~t~e~i~~~~~~l~~~l~ 434 (447)
.+.|||..| ....++|++++.+.|.+++.
T Consensus 399 P~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 399 PGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp TTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 157999977 34688999988888877663
No 237
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=50.21 E-value=19 Score=30.24 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=29.2
Q ss_pred CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEE
Q 013204 203 ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA 243 (447)
Q Consensus 203 ~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~ 243 (447)
-..++||+|-+.+..|.... +.++.+++++||+.+|.
T Consensus 158 l~Pa~vicEi~~~~dG~mar----~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 158 LQPAGVICELVRDEDGLMMR----LDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp SCSBEEEEEBBCTTTCCBCB----HHHHHHHHHHHTCCEEE
T ss_pred CCceEEEEEEeECCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 35689999988445565655 89999999999998884
No 238
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=49.72 E-value=20 Score=23.21 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013204 416 IMSPEEVDELISKYGKALKATEERVKELKSQ 446 (447)
Q Consensus 416 ~~t~e~i~~~~~~l~~~l~~~~~~~~~~~~~ 446 (447)
.-+++++|.+++.+...+..+.++...++.+
T Consensus 19 GY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~ 49 (57)
T 2wuj_A 19 GYDEDEVNEFLAQVRKDYEIVLRKKTELEAK 49 (57)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999888887777666654
No 239
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.44 E-value=71 Score=24.22 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=30.5
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 013204 408 NIMMSPPFIMSPEEVDELISKYGKALKATEERVKELKSQQ 447 (447)
Q Consensus 408 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~~~~~~~ 447 (447)
.+.++ ..+.+.++.+.+.++..+..++.+....|+|+
T Consensus 75 ~V~I~---a~~~e~i~~A~~~Ie~Ll~~v~~~~~~~~~q~ 111 (119)
T 2yqr_A 75 YIYIS---HPKPEGLAAAKKLCENLLQTVHAEYSRFVNQI 111 (119)
T ss_dssp EEEEE---ESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEE---eCCHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Confidence 45665 57899999999999999999998887776653
No 240
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=46.32 E-value=16 Score=21.84 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013204 418 SPEEVDELISKYGKALKATEERVKELKSQ 446 (447)
Q Consensus 418 t~e~i~~~~~~l~~~l~~~~~~~~~~~~~ 446 (447)
|.+++-.-++++.+-+.+.++++..+|.+
T Consensus 3 tk~~l~qkI~kVdrEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 3 SKEELIQNMDRVDREITMVEQQISKLKKK 31 (42)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666677777788777765
No 241
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=44.43 E-value=35 Score=28.76 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=28.2
Q ss_pred CcEEEEEEccc-cCCCCCccCChhHHHHHHHHHHhcCCEEEE
Q 013204 203 ETIAAFIAEPV-IGAGGVIPPPATYFEKVQAVVKKYDILFIA 243 (447)
Q Consensus 203 ~~~a~vi~epv-~~~~G~~~~~~~~l~~l~~l~~~~g~~li~ 243 (447)
-..++||+|-+ .+..|.... +.++.+++++||+.+|.
T Consensus 157 l~Pa~vicEiv~~~~dG~mar----~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 157 LQPAGAICEIVSQKDEGSMAH----TDELRVFADEHGLALIT 194 (206)
T ss_dssp SCSBEEEEEBBCSSSTTSBCC----HHHHHHHHHHHTCEEEE
T ss_pred CCceEEEEEEeeeCCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 34678999993 334455555 89999999999999884
No 242
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=39.11 E-value=39 Score=28.88 Aligned_cols=39 Identities=13% Similarity=0.203 Sum_probs=30.4
Q ss_pred CcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEE-ehh
Q 013204 203 ETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA-DEV 246 (447)
Q Consensus 203 ~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~-DEv 246 (447)
-..++||+|-++.. |.... +.++.+++++||+.+|. +|.
T Consensus 177 l~Pa~VicEi~~dd-G~mar----~~~l~~fA~~h~l~~iti~dL 216 (227)
T 1snn_A 177 LVPITTICEMMGDD-GNAMS----KNETKRYAEKHNLIYLSGEEI 216 (227)
T ss_dssp SCSEEEEEEEBCTT-SSBCC----HHHHHHHHHHHTCCEEEHHHH
T ss_pred CCceEEEEEEeCCC-CCcCC----HHHHHHHHHHcCCcEEEHHHH
Confidence 45689999998755 55555 89999999999999884 444
No 243
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=37.25 E-value=49 Score=28.22 Aligned_cols=38 Identities=8% Similarity=0.253 Sum_probs=24.6
Q ss_pred EEEEEEccccCC---CCCc-cCChhHHHHHHHHHHhcCCEEE
Q 013204 205 IAAFIAEPVIGA---GGVI-PPPATYFEKVQAVVKKYDILFI 242 (447)
Q Consensus 205 ~a~vi~epv~~~---~G~~-~~~~~~l~~l~~l~~~~g~~li 242 (447)
...|++.|.... .|.+ .....|-+.+.++|+++|+.+|
T Consensus 126 ~~vil~tp~p~~~~~~~~~~~~~~~y~~~~~~vA~~~~v~~i 167 (233)
T 1k7c_A 126 AKVILSSQTPNNPWETGTFVNSPTRFVEYAELAAEVAGVEYV 167 (233)
T ss_dssp CEEEEECCCCCCTTTTSSCCCCCCHHHHHHHHHHHHHTCEEE
T ss_pred CEEEEECCCCccccCCCccccchHHHHHHHHHHHHHhCCeEE
Confidence 346777775321 1321 2334677889999999998877
No 244
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=35.29 E-value=56 Score=27.75 Aligned_cols=35 Identities=11% Similarity=0.176 Sum_probs=27.5
Q ss_pred cEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEE
Q 013204 204 TIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA 243 (447)
Q Consensus 204 ~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~ 243 (447)
..++||+|-++ ..|.... +.++.+++++||+.+|.
T Consensus 167 ~Pa~vicEi~~-~dG~mar----~~~l~~fA~~h~l~~it 201 (217)
T 1g57_A 167 KPAGVLCELTN-DDGTMAR----APECIEFANKHNMALVT 201 (217)
T ss_dssp CSCEEEEEBBC-TTSSBCC----HHHHHHHHHHTTCEEEE
T ss_pred CceEEEEEEeC-CCCCccC----HHHHHHHHHHcCCCEEE
Confidence 45788888774 4455555 89999999999999884
No 245
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A
Probab=33.07 E-value=1e+02 Score=27.88 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=32.5
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCC--hhHHHHHHHHHHhcCCEEEEeh
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPP--ATYFEKVQAVVKKYDILFIADE 245 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~--~~~l~~l~~l~~~~g~~li~DE 245 (447)
++++.+.+..+-..+.+-+... .+|....+ .+.++++.+.|+++|+.+|+|=
T Consensus 72 ~~~~~l~~~~G~N~VRi~~~~~---~~~~~~~~~~~~~ld~~v~~a~~~Gi~VilD~ 125 (327)
T 3pzt_A 72 DSLKWLRDDWGITVFRAAMYTA---DGGYIDNPSVKNKVKEAVEAAKELGIYVIIDW 125 (327)
T ss_dssp HHHHHHHHHTCCSEEEEEEESS---TTSTTTCGGGHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEEeEEC---CCCcccCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4555554555556666655422 22322111 3667889999999999999983
No 246
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=32.54 E-value=61 Score=25.70 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHH-HHHHhcCCEEE-Eehhhc
Q 013204 190 ANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ-AVVKKYDILFI-ADEVIC 248 (447)
Q Consensus 190 ~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~-~l~~~~g~~li-~DEv~~ 248 (447)
.+.|.+++.. .++..|+++-..++.|...+.....+... .+++++++.++ +||-+|
T Consensus 44 ~~~l~~li~~---~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~T 101 (150)
T 1vhx_A 44 LSRLSELIKD---YTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLT 101 (150)
T ss_dssp HHHHHHHHTT---SEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSC
T ss_pred HHHHHHHHHH---cCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCC
Confidence 3777887774 35566666644444454433322223333 34445687555 699876
No 247
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=30.56 E-value=60 Score=27.83 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=28.7
Q ss_pred CcEEEEEEccccCC----------CCCccCChhHHHHHHHHHHhcCCEEEE
Q 013204 203 ETIAAFIAEPVIGA----------GGVIPPPATYFEKVQAVVKKYDILFIA 243 (447)
Q Consensus 203 ~~~a~vi~epv~~~----------~G~~~~~~~~l~~l~~l~~~~g~~li~ 243 (447)
-..++||+|-++-. .|.... +.++.+++++||+.+|.
T Consensus 166 l~PagVicEi~~~~~~~~~~~~~~dG~mar----~~~l~~fA~~h~L~iit 212 (233)
T 1k4i_A 166 KRPVAVISEIVDDGQEVEGRAVRAAPGMLR----GDECVAFARRWGLKVCT 212 (233)
T ss_dssp CCSBEEEEEBEECCEECTTSSCEESCEECC----HHHHHHHHHHTTCEEEE
T ss_pred CCceEEEEEeCCCcccccccccCCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 35678999887651 355555 89999999999999985
No 248
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=27.72 E-value=92 Score=22.45 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013204 415 FIMSPEEVDELISKYGKALKATEERVKELKS 445 (447)
Q Consensus 415 ~~~t~e~i~~~~~~l~~~l~~~~~~~~~~~~ 445 (447)
...+++++..+..-|++....++.+...|..
T Consensus 4 a~~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~ 34 (94)
T 3fx7_A 4 VQMDTEEVREFVGHLERFKELLREEVNSLSN 34 (94)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999988887776666544
No 249
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=25.43 E-value=1.5e+02 Score=20.55 Aligned_cols=47 Identities=6% Similarity=0.016 Sum_probs=30.0
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEehhhc
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC 248 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~DEv~~ 248 (447)
+...+.+. .....+|++-.. . +++....+..+|++++++++.-....
T Consensus 17 ~~v~kai~---~gkaklViiA~D-------~-~~~~~~~i~~lc~~~~Ip~~~v~sk~ 63 (82)
T 3v7e_A 17 KQTVKALK---RGSVKEVVVAKD-------A-DPILTSSVVSLAEDQGISVSMVESMK 63 (82)
T ss_dssp HHHHHHHT---TTCEEEEEEETT-------S-CHHHHHHHHHHHHHHTCCEEEESCHH
T ss_pred HHHHHHHH---cCCeeEEEEeCC-------C-CHHHHHHHHHHHHHcCCCEEEECCHH
Confidence 44445554 345556555432 1 23678999999999999998754433
No 250
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=25.13 E-value=1.7e+02 Score=21.16 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEccccCCCCCccCCh----hHHHHHHHHHHhcCCEEE-Eehhhc
Q 013204 189 LANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPA----TYFEKVQAVVKKYDILFI-ADEVIC 248 (447)
Q Consensus 189 ~~~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~----~~l~~l~~l~~~~g~~li-~DEv~~ 248 (447)
+++.|++++.+... ..+|+=-|.+.. |..-+.. .|.+.|.+ + ++.++ +||-+|
T Consensus 39 ~~~~l~~li~e~~v--~~iVvGlP~~md-Gt~~~~~~~~~~f~~~L~~---~-~lpV~~~DERlT 96 (98)
T 1iv0_A 39 DVEALLDFVRREGL--GKLVVGLPLRTD-LKESAQAGKVLPLVEALRA---R-GVEVELWDERFT 96 (98)
T ss_dssp HHHHHHHHHHHHTC--CEEEEECCCCCC-SSSCCCSSTTHHHHHHHHH---T-TCEEEEECCSCC
T ss_pred HHHHHHHHHHHcCC--CEEEEeeccCCC-CCcCHHHHHHHHHHHHHhc---C-CCCEEEECCCCC
Confidence 35778888876543 234555565433 3333333 44544444 3 77665 698665
No 251
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=23.61 E-value=53 Score=28.51 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCEEEEeh
Q 013204 227 FEKVQAVVKKYDILFIADE 245 (447)
Q Consensus 227 l~~l~~l~~~~g~~li~DE 245 (447)
.+++.++|++||+.||+++
T Consensus 85 a~~l~~l~~~~~~~liInd 103 (243)
T 3o63_A 85 CEILADAAHRYGALFAVND 103 (243)
T ss_dssp HHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHhhCCEEEEeC
Confidence 4779999999999998843
No 252
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=22.65 E-value=1.7e+02 Score=22.04 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=27.8
Q ss_pred HHHHHHHHhhCCCcEEEEEEccccCCCCCccCChhHHHHHHHHHHhcCCEEEEe
Q 013204 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIAD 244 (447)
Q Consensus 191 ~~le~~l~~~~~~~~a~vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~~li~D 244 (447)
+...+.+.+ ....+|++-.. +++.+....+..+|++++++++.-
T Consensus 26 ~~v~kai~~---gkakLViiA~D-------~~~~~~~~~l~~lc~~~~VP~~~v 69 (121)
T 2lbw_A 26 KEVVKALRK---GEKGLVVIAGD-------IWPADVISHIPVLCEDHSVPYIFI 69 (121)
T ss_dssp HHHHHHHHH---SCCCEEEECTT-------CSCTTHHHHHHHHHHHTCCCEEEC
T ss_pred HHHHHHHHc---CCceEEEEeCC-------CCHHHHHHHHHHHHHhcCCcEEEE
Confidence 455555554 33445555432 223345888999999999998754
No 253
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=21.08 E-value=60 Score=26.25 Aligned_cols=19 Identities=11% Similarity=0.366 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHhcCCEEE
Q 013204 224 ATYFEKVQAVVKKYDILFI 242 (447)
Q Consensus 224 ~~~l~~l~~l~~~~g~~li 242 (447)
..+-+.+.++|+++|+.++
T Consensus 119 ~~~n~~~~~~a~~~~v~~i 137 (190)
T 1ivn_A 119 EAFSAIYPKLAKEFDVPLL 137 (190)
T ss_dssp HHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHcCCeEE
Confidence 3455668889999998766
No 254
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=20.57 E-value=59 Score=31.15 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=23.1
Q ss_pred ChhHHHHHHHHHHhcCCEEEEehhhc
Q 013204 223 PATYFEKVQAVVKKYDILFIADEVIC 248 (447)
Q Consensus 223 ~~~~l~~l~~l~~~~g~~li~DEv~~ 248 (447)
+.+.|++|++-|+++|+-||+|=|..
T Consensus 75 t~~df~~lv~~aH~~Gi~VilD~V~N 100 (496)
T 4gqr_A 75 NEDEFRNMVTRCNNVGVRIYVDAVIN 100 (496)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 45789999999999999999998854
No 255
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=20.25 E-value=1.6e+02 Score=20.51 Aligned_cols=31 Identities=16% Similarity=0.481 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013204 415 FIMSPEEVDELISKYGKALKATEERVKELKS 445 (447)
Q Consensus 415 ~~~t~e~i~~~~~~l~~~l~~~~~~~~~~~~ 445 (447)
+..++++++.+...+.....+++.....+++
T Consensus 7 i~v~~e~l~~~A~~~~~~~~~i~~~l~~L~~ 37 (93)
T 4ioe_A 7 IKITPEELERIAGNFKNAAGEAQSQINRLEG 37 (93)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999888888887777666655544
Done!