RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013204
(447 letters)
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 676 bits (1747), Expect = 0.0
Identities = 176/442 (39%), Positives = 267/442 (60%), Gaps = 2/442 (0%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
L FT +V+ EG Y+ DVNG++YLD+ +GLW G L+ AA A
Sbjct: 29 SLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKA 88
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
Q P YH+F+ R + ++ L+++L+E+ + +VF+TNSGSEANDT VK++W+ +
Sbjct: 89 QYERFPGYHAFFGRMSDQTVMLSEKLVEV-SPFDSGRVFYTNSGSEANDTMVKMLWFLHA 147
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
A G+P K+K + R +YHG T ++AS++G P + F LP P +H CPHYWRY GE
Sbjct: 148 AEGKPQKRKILTRWNAYHGVTAVSASMTGKPY-NSVFGLPLPGFVHLTCPHYWRYGEEGE 206
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
TEE++ RLA LE+ I +EG +TIA F AEPV+GAGGVIPP YF+ + +++KYDI
Sbjct: 207 TEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIP 266
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
I+DEVIC FGR G +GC Y PD + +K L++ + P+GA+++ PE+S+ + +
Sbjct: 267 VISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIE 326
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
+ F HGFT SGHPV CA+A++A+ + + E V ++AP+F++ +K ++ P IGE
Sbjct: 327 AIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEY 386
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
RG G + E +K+ PF + C G++ R G ++++ PPFI++
Sbjct: 387 RGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEA 446
Query: 421 EVDELISKYGKALKATEERVKE 442
++DE+ K KAL V
Sbjct: 447 QMDEMFDKLEKALDKVFAEVAA 468
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 652 bits (1685), Expect = 0.0
Identities = 179/445 (40%), Positives = 265/445 (59%), Gaps = 6/445 (1%)
Query: 1 MLAPFT--AGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAA 58
P T + ++ EG V+D NG+K +D+ AGL+C +G ++ A
Sbjct: 17 FFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAI 76
Query: 59 TAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYY 118
Q L +YH++ T+ S+ LAK +++ M++V+F SGS+AN+T +KL+WYY
Sbjct: 77 ATQAKNLAYYHAYVGHGTEASITLAKMIIDR-APKGMSRVYFGLSGSDANETNIKLIWYY 135
Query: 119 NNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHP 178
NN LGRP KKK I+R + YHGS ++ SL+GL H FDLP VLHT+ P+Y+R
Sbjct: 136 NNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDR 195
Query: 179 GETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD 238
+EE++S A+ LE++IL EGPETIAAFI EP++G GG++PPPA Y+EK+QAV+KKYD
Sbjct: 196 SMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYD 255
Query: 239 ILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQ 298
+L +ADEV+ FGRLGTMFG D Y IKPDL++ AK L+SAY P+ ++V+ V +V+
Sbjct: 256 VLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQG 315
Query: 299 SNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDG-VKAFSDSPII 357
S+ LGS HG+TYS HP+ A + L++ E ++V + F+ KA +
Sbjct: 316 SDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNV 375
Query: 358 GEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV--SGDNIMMSPPF 415
GE+RG G++ EF +K F IG G++ R GD + +PP
Sbjct: 376 GEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQGDILGFAPPL 435
Query: 416 IMSPEEVDELISKYGKALKATEERV 440
++ E+ D ++SK A+K+ +
Sbjct: 436 CLTREQADIVVSKTADAVKSVFANL 460
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 651 bits (1683), Expect = 0.0
Identities = 168/444 (37%), Positives = 258/444 (58%), Gaps = 8/444 (1%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
L PFT V+ + EG Y++D G K +D +AGLWC +G AA
Sbjct: 18 HLHPFTDTASLNQAGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARR 77
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
Q+ LPFY++F+ T ++L+ L E+ T + +VF+TNSGSE+ DT +++V Y +
Sbjct: 78 QMEELPFYNTFFKTTHPAVVELSSLLAEV-TPAGFDRVFYTNSGSESVDTMIRMVRRYWD 136
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
G+P KK I R YHGST+ ASL G+ +H++ DLP P + H + P ++++
Sbjct: 137 VQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHG-KDM 195
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
T +E+ A LE+ IL+ G + +AAF+ EP+ GAGGVI PPATY+ +++ + +KYD+L
Sbjct: 196 TPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVL 255
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
+ADEVIC FGR G FG + +PDL + AK LSS Y+PIGA+ V V+E + +
Sbjct: 256 LVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAG-- 313
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQV-NKIAPKFQDGVK-AFSDSPIIG 358
G F+HGFTYSGHPV AVA + ++ IV++V + I P Q + FS +
Sbjct: 314 --GDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVD 371
Query: 359 EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMS 418
++RG G++ NK+ E FP IG ++ +++R GD+I+ +PP +M+
Sbjct: 372 DVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACGDHIVSAPPLVMT 431
Query: 419 PEEVDELISKYGKALKATEERVKE 442
EVDE+++ + L+ E+ +K
Sbjct: 432 RAEVDEMLAVAERCLEEFEQTLKA 455
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 650 bits (1679), Expect = 0.0
Identities = 137/442 (30%), Positives = 235/442 (53%), Gaps = 5/442 (1%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
+L P + V+ +EG YV+ +G++ +D AG+WC +G +V A
Sbjct: 22 ILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAH 81
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
Q LP+ + T P+ LA+++ + T + ++FFT GS A D+ ++ +YNN
Sbjct: 82 QAMVLPYASPW-YMATSPAARLAEKIATL-TPGDLNRIFFTTGGSTAVDSALRFSEFYNN 139
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
LGRP KK+ I R YHGST + A+ +G FD+ + P+
Sbjct: 140 VLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRH--AGNR 197
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
++E + L ED I GP+TIAAF+AEP++ +GGVI PPA Y + +A+ +K+DIL
Sbjct: 198 SQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDIL 257
Query: 241 FIADEVICAFGRLGTMFGCDK-YSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQS 299
+I+DEV+ FGR G F +K + + PD+++FAK ++S Y+P+G + +S V I ++
Sbjct: 258 YISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGEN 317
Query: 300 NTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGE 359
F++G+TYS PV+CA A+ +++ + IV+Q ++A F + + D P + E
Sbjct: 318 AKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLRDLPGVAE 377
Query: 360 IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSP 419
R GL+ + + + + + +C + G++VR GD ++SPP I+S
Sbjct: 378 TRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPLGDLCVISPPLIISR 437
Query: 420 EEVDELISKYGKALKATEERVK 441
++DE+++ +A+
Sbjct: 438 AQIDEMVAIMRQAITEVSAAHG 459
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 644 bits (1664), Expect = 0.0
Identities = 168/444 (37%), Positives = 261/444 (58%), Gaps = 10/444 (2%)
Query: 1 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
L PF+A + VI ++ G ++ D G++ LD++AGLWC +G L A
Sbjct: 23 HLHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAAR 82
Query: 61 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 120
Q+ LP+Y++F+ T P++ LA++L E+ + VFF GSEANDT +++V Y
Sbjct: 83 QMRELPYYNTFFKTTHVPAIALAQKLAEL-APGDLNHVFFAGGGSEANDTNIRMVRTYWQ 141
Query: 121 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 180
G+P K I+R+ +YHGST+ +++L G+ +H + L P V H + P++W +
Sbjct: 142 NKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLI-PDVHHINQPNWWAEGGDMD 200
Query: 181 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 240
EE+ A LE+ IL+ G +AAFIAEPV GAGGVI P +Y+ ++Q + KYDIL
Sbjct: 201 -PEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDIL 259
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
IADEVIC FGR G FG I+P +++ AK LSS Y PIG +V EV+ VI
Sbjct: 260 LIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGK--- 316
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKI-APKFQDGVKAFSDSPIIGE 359
F+HG+TYSGHPV+ AVA+E L+I +E NI++ V + AP ++ +A +D P++GE
Sbjct: 317 --DEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGE 374
Query: 360 IRGTGLILGTEFADNKSPNEPFPPEWG-IGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMS 418
+ G++ NK+ F E G IG +C + +++R GD +++SPP +++
Sbjct: 375 AKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVGDRMIISPPLVIT 434
Query: 419 PEEVDELISKYGKALKATEERVKE 442
P E+DE+ + K+L + +++
Sbjct: 435 PAEIDEMFVRIRKSLDEAQAEIEK 458
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 628 bits (1623), Expect = 0.0
Identities = 139/437 (31%), Positives = 215/437 (49%), Gaps = 11/437 (2%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 63
P+TA P +I +EGS++ D G+K DSL+GLW G + + A QL+
Sbjct: 22 PYTANRNFLR-DPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLS 80
Query: 64 TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 123
TL + F S LA+++ ++ T + VFFT+SGSE T VK+V Y G
Sbjct: 81 TLDYSPGF-QYGHPLSFQLAEKITDL-TPGNLNHVFFTDSGSECALTAVKMVRAYWRLKG 138
Query: 124 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 183
+ K K I R + YHG + SL G+ + F P V H A+ +
Sbjct: 139 QATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPK 198
Query: 184 EYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA 243
E LA+ L LI IAA EP+ G+ GV+ PP Y ++ + + +++IL +
Sbjct: 199 EGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVF 258
Query: 244 DEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNT-- 301
DEVI FGR G+MFG D + + PDL+ AK +++ +P+GA++ S E+ + +Q
Sbjct: 259 DEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEY 318
Query: 302 LGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR 361
F HG+TYS HPV+CA + AL + ++ N+V+ V ++AP F+ + + + +IR
Sbjct: 319 AVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIR 378
Query: 362 GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEE 421
GL + A P E G+ + K G VR GD + P F P++
Sbjct: 379 NFGLAGAIQIAPRDGDAIVRPFEAGMALW------KAGFYVRFGGDTLQFGPTFNSKPQD 432
Query: 422 VDELISKYGKALKATEE 438
+D L G+ L +
Sbjct: 433 LDRLFDAVGEVLNKLLD 449
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 608 bits (1570), Expect = 0.0
Identities = 136/430 (31%), Positives = 228/430 (53%), Gaps = 12/430 (2%)
Query: 12 TDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSF 71
+ V K+EG +V D+ GK+YLD ++GLWC G L AA QL TL ++
Sbjct: 28 SPNSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFP-- 85
Query: 72 WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 131
+++ +P++ LA++L E +FF+NSGSEAN+T K+ Y G P++ KF+
Sbjct: 86 MSQSHEPAIKLAEKLNEW--LGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFM 143
Query: 132 ARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191
+R + YHG+T+ + +G +++ A LH P +R E E Y
Sbjct: 144 SRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPG-IERENIYDVECVK 202
Query: 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251
++ ++ E ETIAAFI EP+I GG++ P Y + V +K+ L I+DEVIC FG
Sbjct: 203 EVDRVMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFG 262
Query: 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 311
R G FG Y +KPD+++ AK ++SAY+P+ A V E+ E + F H T+
Sbjct: 263 RTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKG-EYEFFRHINTF 321
Query: 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTGLILGTE 370
G+P +CA+A++ L+I + N++E+ ++ + +K + P++G+IRG GL++G E
Sbjct: 322 GGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIE 381
Query: 371 FADNKSPNEPFPPEWGIGAYFGAQ-----CEKHGMLVRVSGDNIMMSPPFIMSPEEVDEL 425
++K EP + + ++GM + + ++PP ++S EE+ +
Sbjct: 382 LVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFV 441
Query: 426 ISKYGKALKA 435
I A++
Sbjct: 442 IGTLKTAMER 451
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 574 bits (1483), Expect = 0.0
Identities = 129/432 (29%), Positives = 209/432 (48%), Gaps = 26/432 (6%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 75
V + EG ++YD G++YLD +G +G + AQ LPF H +
Sbjct: 12 YPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGS-QFS 70
Query: 76 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 135
+ + A L + + + GSEA ++ VKL Y+ G P + K I R
Sbjct: 71 SDVLEEYAGRLARF-VGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVP 129
Query: 136 SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLED 195
SYHG++L + + SG+ A + + P + P P A L
Sbjct: 130 SYHGASLGSLAASGMGARRELYT---PLMRPEAWPKL-----PKPDPARNGAEDAEGLRA 181
Query: 196 LILKEGPETIAAFIAEPVIGA-GGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 254
L+ +EGPET+AAF+AEPV+GA + P Y+E+V+ + + I+FIADEV+ GR G
Sbjct: 182 LLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCG 241
Query: 255 TMFGCDKYS-IKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSG 313
+ ++S + PD+ K L++ Y P+ +L +P+V E + S G+F HGFTY+G
Sbjct: 242 SPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGS---GAFMHGFTYAG 298
Query: 314 HPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTGLILGTEFA 372
HPVS A + L I + ++ + + G++A + P + ++RGTGL+LG
Sbjct: 299 HPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLG 358
Query: 373 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR--------VSGDNIMMSPPFIMSPEEVDE 424
D + + F GI + GA K G++ GD++++ PP ++ EVD
Sbjct: 359 D-LATGQAFETP-GIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDG 416
Query: 425 LISKYGKALKAT 436
L++ AL+
Sbjct: 417 LLALLAGALEDV 428
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 482 bits (1242), Expect = e-169
Identities = 135/434 (31%), Positives = 223/434 (51%), Gaps = 7/434 (1%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 63
PFT + D +PL+IE G V D+NGK+Y D + +W G + L A QL
Sbjct: 16 PFTQ-MKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLG 74
Query: 64 TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 123
+ + + T P+ LA+ L+++ + K+ +VF+++SG+EA + +K+ + Y +G
Sbjct: 75 KIA-HSTLLGMTNVPATQLAETLIDI-SPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIG 132
Query: 124 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 183
+P K+KFIA + YHG T+ A S+ + H + P+ +R +
Sbjct: 133 KPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYR--SESGDPD 190
Query: 184 EYSTRLANNLEDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKYDILFI 242
E + L L L+E E IAA E ++ GA G+I P Y V+ + YD+L I
Sbjct: 191 ECRDQCLRELAQL-LEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMI 249
Query: 243 ADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTL 302
DEV FGR G MF C+ +++PDL++ K ++ Y+PI + ++ + + L
Sbjct: 250 VDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENL 309
Query: 303 GSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG 362
+F HG +Y+G+ + CAVA+E L +++ NIVEQV + + K ++ P +G+IR
Sbjct: 310 KTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQ 369
Query: 363 TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEV 422
G + G E +K EP+P + IG + + GML R GD I PP + EE+
Sbjct: 370 LGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLPPLASTAEEL 429
Query: 423 DELISKYGKALKAT 436
E+++ +A+
Sbjct: 430 SEMVAIMKQAIHEV 443
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 366 bits (942), Expect = e-124
Identities = 108/427 (25%), Positives = 196/427 (45%), Gaps = 26/427 (6%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 74
P++IE+++GS+VYD +G+ LD +G LG P +V+ L H F
Sbjct: 25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLD--HLFSEM 82
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
++P +DLA L + T + + ++G+E+N+ +++ G+ + +
Sbjct: 83 LSRPVVDLATRLANI-TPPGLDRALLLSTGAESNEAAIRMAKLVT---GKY---EIVGFA 135
Query: 135 KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLE 194
+S+HG T AAS + + A P +R +Y +
Sbjct: 136 QSWHGMTGAAASATYSAG-RKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYL-AELDYAF 193
Query: 195 DLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 254
DLI ++ +AAFIAEP++ +GG+I P Y ++ + +L I DE GR G
Sbjct: 194 DLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG 253
Query: 255 TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGH 314
TMF C + + PD+++ +K L + +P+ AI+ S + E H + T+
Sbjct: 254 TMFACQRDGVTPDILTLSKTLGA-GLPLAAIVTSAAIEERAHE-----LGYLFYTTHVSD 307
Query: 315 PVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFAD 373
P+ AV + L + + +V + N + + + G+ + IG++RG GL+LG E
Sbjct: 308 PLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVK 367
Query: 374 NKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----GDNIMMSPPFIMSPEEVDELISK 428
++ EP GA +C G+ + + G ++PP +S +E+D +S
Sbjct: 368 DRRTKEPADGL---GAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSL 424
Query: 429 YGKALKA 435
G+A++
Sbjct: 425 LGQAIER 431
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 349 bits (898), Expect = e-113
Identities = 96/487 (19%), Positives = 164/487 (33%), Gaps = 61/487 (12%)
Query: 4 PFTA--GWQSTDVHPLVIEKSEGSYVYDVNG----KKYLDSLAGLWCTALG-GSEPRLVA 56
PFT V + E +Y + + D+ A W + L
Sbjct: 345 PFTQHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAR 404
Query: 57 AATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVW 116
+ F +P+L A+ LL+ ++V+F+++GS A + +K+ +
Sbjct: 405 EMGYTAARFG-HVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAF 463
Query: 117 YY---------NNALGRPNKKKFIARQKSYHGSTLIAASLSG------------------ 149
+ K IA + SYHG TL A
Sbjct: 464 RKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGL 523
Query: 150 ------LPALHQKFDLPAPFVLHTDCPHYWRYAHPGET----------EEEYSTRLANNL 193
+ + +++ P P Y + E YS L+ +L
Sbjct: 524 FLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHL 583
Query: 194 EDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252
++ + A I EPVI GAGG+ + + + I I DEV F R
Sbjct: 584 QEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWR 643
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
LG + KPD+ FAK L+ +P+ L + V + S + HG +YS
Sbjct: 644 LGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKL-KALLHGHSYS 702
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKF-----QDGVKAFSDSPIIGEIRGTGLIL 367
H + CA A +A++ +K+ + ++ V+ S + + G +
Sbjct: 703 AHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLF 762
Query: 368 GTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELIS 427
E + S + + G+ R G+ I + SPE L++
Sbjct: 763 ALELKADASNS---GYASLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLT 819
Query: 428 KYGKALK 434
K K L
Sbjct: 820 KLYKRLG 826
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 334 bits (860), Expect = e-111
Identities = 102/438 (23%), Positives = 195/438 (44%), Gaps = 35/438 (7%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVY---DVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 60
P+++ V P+V + G+++ D + LD+++ W G P L A T
Sbjct: 44 PYSS-IGREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTT 102
Query: 61 QLNTLPFYHS-FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYN 119
QL + H F T +P+ LAK L+++ T + + VFF++SGS + + K+ Y
Sbjct: 103 QLRVMN--HVMFGGLTHEPAARLAKLLVDI-TPAGLDTVFFSDSGSVSVEVAAKMALQYW 159
Query: 120 NALGRPNKKKFIARQKSYHGSTLIAASLSGLPAL-HQKFDLPAPFVLHTDCPHYWRYAHP 178
G P K++ + + YHG T +A S+ H + + P
Sbjct: 160 RGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQV-------P 212
Query: 179 GETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKY 237
+ + Y + E L + +AA + EPV+ GAGG+ Y ++ + ++Y
Sbjct: 213 RDYDPAY----SAAFEAQ-LAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRY 267
Query: 238 DILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHS 297
++L I DE+ FGR G +F D + PD++ KAL+ Y+ + A L + +V+ I +
Sbjct: 268 EVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISA 327
Query: 298 QSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPII 357
+ G+ HG T+ +P++CAV++ ++++ ++ ++ ++A G+ P +
Sbjct: 328 GAA--GALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAV 385
Query: 358 GEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIM 417
++R G I E P G+ +R + + PP+I
Sbjct: 386 TDVRVCGAIGVIECDRPVDLAVATP-----------AALDRGVWLRPFRNLVYAMPPYIC 434
Query: 418 SPEEVDELISKYGKALKA 435
+P E+ ++ S + +
Sbjct: 435 TPAEITQITSAMVEVARL 452
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 332 bits (854), Expect = e-111
Identities = 111/435 (25%), Positives = 202/435 (46%), Gaps = 30/435 (6%)
Query: 4 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 63
PFT+ ++ + + +EG + +G++ +D ++ W G + P+L AA +Q++
Sbjct: 16 PFTS--MTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQID 73
Query: 64 TLPFYHS-FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL 122
+ H F T P+++L ++L+ M T + VF +SGS A + +K+ Y A
Sbjct: 74 AMS--HVMFGGITHAPAIELCRKLVAM-TPQPLECVFLADSGSVAVEVAMKMALQYWQAK 130
Query: 123 GRPNKKKFIARQKSYHGSTLIAASLSGLPAL-HQKFDLPAPFVLHTDCPHYWRYAHPGET 181
G +++F+ + YHG T A S+ H + P L P
Sbjct: 131 GEA-RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRM------- 182
Query: 182 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKYDIL 240
+ E+ R L + IAA I EP++ GAGG+ + ++++ + + IL
Sbjct: 183 DGEWDERDMVGFARL-MAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGIL 241
Query: 241 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 300
IADE+ FGR G +F C+ I PD++ KAL+ M + A L + EV+E I +
Sbjct: 242 LIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETIS--NG 299
Query: 301 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 360
G F HG T+ G+P++CA A +L I + + +QV I + ++ + D+ ++ ++
Sbjct: 300 EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADV 359
Query: 361 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 420
R G I E + + G+ +R G I + PP+I+ P+
Sbjct: 360 RVLGAIGVVETTHPVNMAALQ-----------KFFVEQGVWIRPFGKLIYLMPPYIILPQ 408
Query: 421 EVDELISKYGKALKA 435
++ L + +A++
Sbjct: 409 QLQRLTAAVNRAVQD 423
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 327 bits (840), Expect = e-108
Identities = 102/427 (23%), Positives = 189/427 (44%), Gaps = 25/427 (5%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 74
P+ ++ G V DV+G + +D +G+ T +G S P++V A +Q+ F
Sbjct: 43 MPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHT-CFMVT 101
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
+ + + ++L + + NSGSEA + VK+ + +P +A
Sbjct: 102 PYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHT---HKPA---VVAFD 155
Query: 135 KSYHGSTLIAASLSGLPALHQK-FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193
+YHG T + +L+ ++ F AP + + +R A G+ A
Sbjct: 156 HAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRA 215
Query: 194 EDLILKE-GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252
+I K+ G + +AA + EP+ G GG I P + + +K D++FIADEV F R
Sbjct: 216 ITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFAR 275
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
G MF C+ I PDL+ AK ++ +P+ A+ E+ + H G TY
Sbjct: 276 TGAMFACEHEGIDPDLIVTAKGIAGG-LPLSAVTGRAEIMDSPHVS-------GLGGTYG 327
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEF 371
G+P++CA A+ ++ + +V + +I +D + ++ IG++RG G ++ E
Sbjct: 328 GNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMEL 387
Query: 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIM-MSPPFIMSPEEVDELISK 428
+ P+ + A G++V G N++ PP + + ++E +
Sbjct: 388 VKAGTT----EPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDV 443
Query: 429 YGKALKA 435
+ L+
Sbjct: 444 LEEVLRG 450
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 325 bits (836), Expect = e-108
Identities = 108/430 (25%), Positives = 200/430 (46%), Gaps = 32/430 (7%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 74
HP+ +++E V+DV G++YLD G+ G P++VAA AQL L F
Sbjct: 23 HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHT-CFQVL 81
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
+P L+L + + + K +GSEA + VK+ R IA
Sbjct: 82 AYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT---KRSG---TIAFS 135
Query: 135 KSYHGSTLIAASLSGLPALHQK-FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193
+YHG T +L+G + L V P G +E++ ++
Sbjct: 136 GAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLH----GISEDDA----IASI 187
Query: 194 EDLILKE-GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252
+ + PE IAA + EPV G GG + ++++A+ ++ I+ IADEV GR
Sbjct: 188 HRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGR 247
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
GT+F ++ + PDL +FAK+++ P+ + EV + + G TY+
Sbjct: 248 TGTLFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPG-------GLGGTYA 299
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEF 371
G+P++C A+E LK++++ N++++ N + K +DG+ A ++ P IG++RG G ++ E
Sbjct: 300 GNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIEL 359
Query: 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIM-MSPPFIMSPEEVDELISK 428
++ N+P + A A+ G+++ G N++ + P + ++ + +
Sbjct: 360 FEDGDHNKPDA---KLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEI 416
Query: 429 YGKALKATEE 438
+ ++
Sbjct: 417 ISQCFDEAKQ 426
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 323 bits (830), Expect = e-107
Identities = 121/433 (27%), Positives = 204/433 (47%), Gaps = 45/433 (10%)
Query: 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPFYH-SF 71
+ PLVI+ EG ++YDV+G KYLD +G+ LG S P ++ Q+ H +
Sbjct: 23 LFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQK--LAHAAA 80
Query: 72 WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 131
+ P L+LAK+L+ + KVFF+NSG+EA + +K+V GR I
Sbjct: 81 NDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNT----GRKY---II 133
Query: 132 ARQKSYHGSTLIAASLSGLPALHQK-FDLPAPFVLHT---DCPHYWRYAHPGETEEEYST 187
A +HG T + SL+ A+ + P V+H + + + E E
Sbjct: 134 AFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVN 193
Query: 188 RLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADE 245
R+ +ED I PE +A EP+ G GG + PP +F ++Q + KKY IL + DE
Sbjct: 194 RVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDE 253
Query: 246 VICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSF 305
V GR G +F + ++ PD+++ AKAL MPIGA + ++
Sbjct: 254 VQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD---------FKPG 304
Query: 306 SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGL 365
H T+ G+ ++CA+ + + I K+ ++ VN+I F + ++ + ++RG GL
Sbjct: 305 MHSNTFGGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQG-----LADDVRGIGL 357
Query: 366 ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDE 424
G E+ + K + + K G+L+ +G + + + PP ++S EE +
Sbjct: 358 AWGLEYNEKKVRDR-----------IIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQ 406
Query: 425 LISKYGKALKATE 437
+ K +K +
Sbjct: 407 GLDILKKVIKVVK 419
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 322 bits (829), Expect = e-107
Identities = 98/446 (21%), Positives = 178/446 (39%), Gaps = 29/446 (6%)
Query: 5 FTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNT 64
Q PL I G+ + + NG++ +D +LG P +VAA +A
Sbjct: 15 AIGNLQKLRFFPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAAN 74
Query: 65 LPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR 124
+ + P++ LA+ LL F K++F +SGS+AN+ + + GR
Sbjct: 75 PAGAT-ILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKAT---GR 130
Query: 125 PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 184
IA +YHG T+ + + SG Q A ++ P +R +
Sbjct: 131 SG---VIAFAGAYHGCTVGSMAFSGHSV--QADAAKADGLILLPYPDPYR----PYRNDP 181
Query: 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIAD 244
+ L + + +I A EP+ GG+I PP + K + + + IL + D
Sbjct: 182 TGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCD 241
Query: 245 EVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGS 304
EV R G + + PD++ K L +P+ A++ E+ + +
Sbjct: 242 EVKVGLARSGRLHCFEHEGFVPDILVLGKGLGGG-LPLSAVIAPAEILDCASA------- 293
Query: 305 FSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGT 363
T G+P+S A + L+ ++ + +DG+ + P+IG+IRG
Sbjct: 294 -FAMQTLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGR 352
Query: 364 GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIM-MSPPFIMSPE 420
GL G E ++ EP E A + + G++V G N++ +PP ++
Sbjct: 353 GLACGMELVCDRQSREPARAE---TAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITET 409
Query: 421 EVDELISKYGKALKATEERVKELKSQ 446
++ + + +A E +Q
Sbjct: 410 DIHKALDLLDRAFSELSAVSNEEIAQ 435
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 318 bits (817), Expect = e-105
Identities = 112/430 (26%), Positives = 193/430 (44%), Gaps = 28/430 (6%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 74
P+ ++G + D +G ++D AG+ T +G S P + AA Q F
Sbjct: 46 APVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHT-CFMVT 104
Query: 75 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 134
+ + +A+ L + + NSG+EA + +K+ GRP +A
Sbjct: 105 PYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLAT---GRPA---VVAFD 158
Query: 135 KSYHGSTLIAASLSGLPALHQK-FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 193
+YHG T + +L+ ++ F AP V + R PG T EE + R + +
Sbjct: 159 NAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDE-PGLTGEEAARRAISRI 217
Query: 194 EDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 253
E I G +++AA I EP+ G GG I P + + A + ++FIADEV F R
Sbjct: 218 ETQI---GAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFART 274
Query: 254 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSG 313
G F + I PD+V+ AK ++ MP+ A+ E+ + +++ G TY G
Sbjct: 275 GAWFASEHEGIVPDIVTMAKGIAGG-MPLSAVTGRAELMDAVYAG-------GLGGTYGG 326
Query: 314 HPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFA 372
+PV+CA A+ AL + +E ++ + I + A ++ IIGE+RG G +L E
Sbjct: 327 NPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIV 386
Query: 373 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIM-MSPPFIMSPEEVDELISKY 429
+ P+ + A+ G+L+ G N++ + PP ++ + +DE I+
Sbjct: 387 KPGTL----EPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITAL 442
Query: 430 GKALKATEER 439
++A
Sbjct: 443 SDIIRAKASH 452
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 306 bits (786), Expect = e-100
Identities = 121/432 (28%), Positives = 195/432 (45%), Gaps = 53/432 (12%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 72
P+V+++++G +VYDVN K+Y D L+ G P ++ A Q L F+
Sbjct: 48 PVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNL--TICSRAFF 105
Query: 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRPNKKKF 130
+ P + L + KV N+G+EAN+T KL W Y N K
Sbjct: 106 S---VPLGICERYLTNLL---GYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKI 159
Query: 131 IARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190
+ + ++ G TL S S F PF P ++ Y
Sbjct: 160 VVCKNNFSGRTLGCISASTTKKCTSNFG---PFA-------------PQFSKVPY----- 198
Query: 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250
++LE L + + AFI EP+ G GVI P Y + V + KKY++LF+ADEV
Sbjct: 199 DDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGL 258
Query: 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT 310
GR G + Y++KPD++ KALS + PI A+L + ++ VI G HG T
Sbjct: 259 GRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKP-----G--EHGST 311
Query: 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGT 369
Y G+P++ ++ +EAL + + E K+ F + +K DS I+ ++RG GL+
Sbjct: 312 YGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAI 371
Query: 370 EFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISK 428
EF I + +++G++ R D + ++PP ++ E++DE
Sbjct: 372 EF------KNELVNVLDI----CLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEI 421
Query: 429 YGKALKATEERV 440
K +K +ER
Sbjct: 422 IVKTVKFFDERF 433
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 301 bits (774), Expect = 1e-98
Identities = 111/426 (26%), Positives = 188/426 (44%), Gaps = 52/426 (12%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 72
P+ +E+ +G Y++DV G+KY D L+ G P++V A +Q++ L + F+
Sbjct: 59 PVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKL--TLTSRAFY 116
Query: 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRPNKKKF 130
N + + + ++F KV N+G EA +T KL W Y + K K
Sbjct: 117 N---NVLGEYEEYITKLF---NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKI 170
Query: 131 IARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190
+ ++ G TL A S S P + F PF+ PG Y
Sbjct: 171 VFAAGNFWGRTLSAISSSTDPTSYDGF---GPFM-------------PGFDIIPY----- 209
Query: 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250
N+L L +AAF+ EP+ G GV+ P Y V+ + ++ +LFIADE+
Sbjct: 210 NDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGL 269
Query: 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT 310
R G D +++PD+V KALS P+ A+L ++ I G HG T
Sbjct: 270 ARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKP-----G--EHGST 322
Query: 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTE 370
Y G+P+ C VAI AL++ +E N+ E +K+ ++ + S ++ +RG GL+
Sbjct: 323 YGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIV 381
Query: 371 FADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKY 429
+ + +G+L + + +I+ +PP ++ +E+ E I
Sbjct: 382 IK---------ETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEII 432
Query: 430 GKALKA 435
K + +
Sbjct: 433 NKTILS 438
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 296 bits (760), Expect = 3e-97
Identities = 116/424 (27%), Positives = 195/424 (45%), Gaps = 57/424 (13%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 72
P+VI K+EG +V D G +Y+D L+ G P+++ A Q N + + F
Sbjct: 19 PIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRV--TLTSRAFH 76
Query: 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRPNKKKF 130
+ +++ ++ V N+G+EA +T +K W Y+ N+ +
Sbjct: 77 S---DQLGPWYEKVAKLT---NKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEI 130
Query: 131 IARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 190
I + ++HG T+ A S+S + F P + PG Y
Sbjct: 131 IVCEDNFHGRTMGAVSMSSNEEYKRGFG---PML-------------PGIIVIPY----- 169
Query: 191 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 250
+LE L P T AAFI EP+ G G+ PPA + ++ V KK ++LF+ADE+
Sbjct: 170 GDLEALKAAITPNT-AAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGL 228
Query: 251 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT 310
GR G +F CD ++ PD+ KAL PI + ++ V G SHG T
Sbjct: 229 GRTGKVFACDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEP-----G--SHGST 281
Query: 311 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTE 370
+ G+P++CAV+I AL++ +E + E+ ++ K +K D+P+I E+RG GL +G E
Sbjct: 282 FGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEI-DNPMITEVRGKGLFIGIE 340
Query: 371 FADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKY 429
P Q + G+L + + +N++ ++PP ++S E+++ K
Sbjct: 341 LN---------EPARPY----CEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKI 387
Query: 430 GKAL 433
L
Sbjct: 388 KAVL 391
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 293 bits (752), Expect = 5e-96
Identities = 105/422 (24%), Positives = 185/422 (43%), Gaps = 59/422 (13%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 72
L+I + +G+ V+D G +Y+D + G LG P +V A Q TL
Sbjct: 28 DLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETL--MAMPQTLP 85
Query: 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 132
+ + L + ++ +VF NSG+EAN+ +K + +KKF+A
Sbjct: 86 T---PMRGEFYRTLTAI-LPPELNRVFPVNSGTEANEAALKFARAH------TGRKKFVA 135
Query: 133 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192
+ + G T+ + S++ P + F P V Y N+
Sbjct: 136 AMRGFSGRTMGSLSVTWEPKYREPF---LPLV-------------EPVEFIPY-----ND 174
Query: 193 LEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252
+E L ET AA I EPV G GGV P + + + ++ L I DE+ GR
Sbjct: 175 VEALKRAVDEET-AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGR 233
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
G F + + I PD+++ AKAL +P+G ++ EV+ + G HG T+
Sbjct: 234 TGKRFAFEHFGIVPDILTLAKALGGG-VPLGVAVMREEVARSM-----PKG--GHGTTFG 285
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFA 372
G+P++ A + A++ + + E+ ++ P F + ++A SP I E+RG GL++G E
Sbjct: 286 GNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLELK 344
Query: 373 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYGK 431
+ +P Y ++H +L +G ++ PP ++ E+++ ++
Sbjct: 345 EKAAP------------YIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRA 392
Query: 432 AL 433
L
Sbjct: 393 VL 394
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 289 bits (741), Expect = 1e-93
Identities = 78/435 (17%), Positives = 152/435 (34%), Gaps = 38/435 (8%)
Query: 16 PLVIEKSEGSYVYD-VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTL---PFYHSF 71
L + +S GSY+ D + G++YLD + +ALG + P LV + S
Sbjct: 36 VLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSN 95
Query: 72 WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPN----- 126
+ + + + + +FF G+ A + +K + + + + +
Sbjct: 96 SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 127 -KKKFIARQKSYHGSTLIAASLSGLPALHQKFD--LPAPFVLHTDCPHYWRYAHPGETEE 183
+ + + ++HG + SL+ P + D P Y R
Sbjct: 156 LGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRI---DAP-YMRPGLDEPAMA 211
Query: 184 EYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA 243
+ P IA F+AEP+ G GG +F ++ + ++D L I
Sbjct: 212 ALEAEALRQARAAF-ETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIF 270
Query: 244 DEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLG 303
DEV G GT + + + PD+V+F K + G + +
Sbjct: 271 DEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVF-------AV 323
Query: 304 SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD--SPIIGEIR 361
T+ G+ A L++ + + E+ + + + + ++ + R
Sbjct: 324 PSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPR 383
Query: 362 GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPE 420
G GL+ +E Q + ++V +G + + PP +S
Sbjct: 384 GRGLMCAFSLPTTADRDE-----------LIRQLWQRAVIVLPAGADTVRFRPPLTVSTA 432
Query: 421 EVDELISKYGKALKA 435
E+D I+ AL
Sbjct: 433 EIDAAIAAVRSALPV 447
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 287 bits (736), Expect = 2e-93
Identities = 118/425 (27%), Positives = 197/425 (46%), Gaps = 52/425 (12%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 72
+ K +GS V+D GK+Y+D G+ TALG P LV A +Q TL +H+ F
Sbjct: 40 DFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETL--WHTSNVFT 97
Query: 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 132
N +P+L L ++L++ A+ +V F NSG+EAN+T KL +Y P K K IA
Sbjct: 98 N---EPALRLGRKLID---ATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIA 151
Query: 133 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192
++HG +L S+ G P F P + N+
Sbjct: 152 FHNAFHGRSLFTVSVGGQPKYSDGF---GPKP-------------ADIIHVPF-----ND 190
Query: 193 LEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252
L + T A + EP+ G GGV + + ++ + ++ L + DEV C GR
Sbjct: 191 LHAVKAVMDDHT-CAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGR 249
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
G +F Y + PD+++ AKAL P+ A+L + E++ +G SHG TY
Sbjct: 250 TGDLFAYMHYGVTPDILTSAKALGGG-FPVSAMLTTQEIASAF-----HVG--SHGSTYG 301
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEF 371
G+P++CAVA A I +++ ++ +F ++A + I +IRG GL++G E
Sbjct: 302 GNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAEL 361
Query: 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYG 430
P G F + G++V +G ++M +P ++ ++ E + ++
Sbjct: 362 K---------PKYKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFA 412
Query: 431 KALKA 435
+A+
Sbjct: 413 QAVGK 417
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 285 bits (732), Expect = 6e-93
Identities = 122/425 (28%), Positives = 203/425 (47%), Gaps = 54/425 (12%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 72
+V+EK +G Y++D KKYLD +G+ ALG + + A AQ++ L H+ ++
Sbjct: 19 DIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKL--LHTSNLYY 76
Query: 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 132
N + AK L + AS + +VFFTNSG+E+ + +K Y G +FIA
Sbjct: 77 N---ENIAAAAKNLAK---ASALERVFFTNSGTESIEGAMKTARKYAFNKG-VKGGQFIA 129
Query: 133 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192
+ S+HG TL A SL+ + F P + G +Y N+
Sbjct: 130 FKHSFHGRTLGALSLTANEKYQKPF---KPLI-------------SGVKFAKY-----ND 168
Query: 193 LEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252
+ + +T A I E V G GG+ P +++ ++ + + DIL IADE+ C GR
Sbjct: 169 ISSVEKLVNEKT-CAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGR 227
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
G F + I PD+++ AKAL + +GA +++ +V+ SN+L + HG TY
Sbjct: 228 SGKFFAYEHAQILPDIMTSAKALGCG-LSVGAFVINQKVA------SNSLEAGDHGSTYG 280
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEF 371
G+P+ CA +I+KE I+E VNK+ P + + + + +G G + G
Sbjct: 281 GNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSL 340
Query: 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYG 430
+ + +C+++ +L+ G+N + PP I+ E +DE+ K
Sbjct: 341 DKSVKVAK-----------VIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLR 389
Query: 431 KALKA 435
KALK+
Sbjct: 390 KALKS 394
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 282 bits (723), Expect = 1e-91
Identities = 118/425 (27%), Positives = 196/425 (46%), Gaps = 56/425 (13%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 72
P +GS++YD G YLD +G+ LG S PRLV A Q L H FW
Sbjct: 23 PATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKL--IHCSNLFW 80
Query: 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 132
N +P ++LA+ L + + KVFF N+G+EAN+ +K+ Y K + ++
Sbjct: 81 N---RPQMELAELLSK---NTFGGKVFFANTGTEANEAAIKIARKYGKKKS-EKKYRILS 133
Query: 133 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192
S+HG TL + + +G P + F P V PG E+ NN
Sbjct: 134 AHNSFHGRTLGSLTATGQPKYQKPF---EPLV-------------PGFEYFEF-----NN 172
Query: 193 LEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 252
+EDL K + A EP+ G G++P + E+ + + +YD L + DEV C GR
Sbjct: 173 VEDLRRKMSEDV-CAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGR 231
Query: 253 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 312
G +F KY + PD+++ AK L +PIGA++V+ + L HG T+
Sbjct: 232 TGKLFAYQKYGVVPDVLTTAKGLGGG-VPIGAVIVNERAN--------VLEPGDHGTTFG 282
Query: 313 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEF 371
G+P++C + +K + +E+V + ++ + ++ ++RG GL++G +F
Sbjct: 283 GNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQF 342
Query: 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYG 430
+ S E +C ++ +LV +G+N + PP + E+D +
Sbjct: 343 REEVSNRE-----------VATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLK 391
Query: 431 KALKA 435
K L+
Sbjct: 392 KVLQG 396
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 278 bits (713), Expect = 3e-89
Identities = 81/454 (17%), Positives = 160/454 (35%), Gaps = 57/454 (12%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYH--SFW 72
E+S G+Y+ DV+G + LD + + +G S P LV N F + +
Sbjct: 45 FFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALG 104
Query: 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYY-------------- 118
+ ++ +E L M+++ GS +N+ K ++ +
Sbjct: 105 ILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKE 164
Query: 119 -------NNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 171
N A G P ++ ++HG T+ + + A+H K D+P+ P
Sbjct: 165 ELETCMINQAPGCP-DYSILSFMGAFHGRTMGCLATTHSKAIH-KIDIPSFDWPIAPFPR 222
Query: 172 Y-WRYAHPGETEEEYSTRLANNLEDLILK--EGPETIAAFIAEPVIGAGGVIPPPATYFE 228
+ + ++ R +EDLI+K + +T+A I EP+ GG +F
Sbjct: 223 LKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFR 282
Query: 229 KVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIK--PDLVSFAKALSSAYMPIGAIL 286
K++ + +K+ F+ DEV G G + + + + D+++F+K + +
Sbjct: 283 KLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTG-GFFHKEE 341
Query: 287 VSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQD 346
P + T+ G P + E + I K +++
Sbjct: 342 FRPNA------------PYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLT 389
Query: 347 GVKAFSD--SPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV 404
G+ I +RG G + D N+ + G+++
Sbjct: 390 GLLDLQARYPQFISRVRGRGTFCSFDTPDESIRNK-----------LISIARNKGVMLGG 438
Query: 405 SGDN-IMMSPPFIMSPEEVDELISKYGKALKATE 437
GD I P + ++ + L +
Sbjct: 439 CGDKSIRFRPTLVFRDHHAHLFLNIFSDILADFK 472
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 271 bits (695), Expect = 9e-88
Identities = 117/423 (27%), Positives = 195/423 (46%), Gaps = 63/423 (14%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 72
P+ + +G Y+YD GK+YLD ++G+ +LG + P+L A Q+ L H +
Sbjct: 11 PVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKL--LHVSNLYE 68
Query: 73 NRTTKPSLDLAKELLEMFTASKM-AKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 131
N +LA +L++ KVFF NSG+E+ + +KL Y G NK KFI
Sbjct: 69 N---PWQEELAHKLVK---HFWTEGKVFFANSGTESVEAAIKLARKYWRDKG-KNKWKFI 121
Query: 132 ARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 191
+ + S+HG T + S +G P H+ F P V PG + + N
Sbjct: 122 SFENSFHGRTYGSLSATGQPKFHKGF---EPLV-------------PGFSYAKL-----N 160
Query: 192 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 251
+++ + ET A I E + G GGV + K+Q + K+ D+L I DEV G
Sbjct: 161 DIDSVYKLLDEET-AGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIG 219
Query: 252 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 311
R G + +++KPD+++ AK L +PIGAIL EV++ T G SHG T+
Sbjct: 220 RTGEFYAYQHFNLKPDVIALAKGLGGG-VPIGAILAREEVAQSF-----TPG--SHGSTF 271
Query: 312 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEF 371
G+P++C + ++ ++ V ++ F++ +K +++G GL+LG E
Sbjct: 272 GGNPLACRAGTVVVDEVEK--LLPHVREVGNYFKEKLKELGKG----KVKGRGLMLGLEL 325
Query: 372 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYG 430
+ + + G+L+ + ++ PP I+ E +D IS
Sbjct: 326 ERECKD-------------YVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLR 372
Query: 431 KAL 433
+ L
Sbjct: 373 EIL 375
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 136 bits (344), Expect = 1e-35
Identities = 92/459 (20%), Positives = 161/459 (35%), Gaps = 101/459 (22%)
Query: 15 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNT-----LPFY 68
H L I ++G + DV+G YLD G LG PR+ AA L+
Sbjct: 39 HGLFISDAQGVHKTDVDGNVYLD-FFGGHGALVLGHGHPRVNAAIAEALSHGVQYAAS-- 95
Query: 69 HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 128
+ A+ ++ F + + K+ FT SG+E +++ A ++
Sbjct: 96 -------HPLEVRWAERIVAAFPS--IRKLRFTGSGTETTLLALRV------ARAFTGRR 140
Query: 129 KFIARQKSYHG-STLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 187
+ + YHG A+ PAP V ET T
Sbjct: 141 MILRFEGHYHGWHDFSASG-YNSHF----DGQPAPGV-------------LPETTAN--T 180
Query: 188 RLA--NNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA 243
L +++E + + IAAFIAEPV GV P ++ + + ++Y LFI
Sbjct: 181 LLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFIL 240
Query: 244 DEVICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVSPEVSE 293
DEVI F R+G ++PDL AKA + +P G + ++S
Sbjct: 241 DEVISGF-RVG--NHGMQALLDVQPDLTCLAKASAGG-LPGGILGGREDVMGVLSRGSDR 296
Query: 294 VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK-AFS 352
+ T +G+P++ A AI A+ E ++ ++N + ++ + F+
Sbjct: 297 KVL-HQGTF---------TGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFA 346
Query: 353 DSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWG---------IGAYFGAQCEKHGMLVR 403
+ G + + I A +++
Sbjct: 347 RKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMR------MALILE 400
Query: 404 VSGDNIMMSPP----FI---MSPEEVDELISKYGKALKA 435
G +I F+ E V+ L++ + + L
Sbjct: 401 --GVDI---GGRGSVFLSAQHEREHVEHLVTTFDRVLDR 434
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 129 bits (327), Expect = 3e-33
Identities = 75/353 (21%), Positives = 124/353 (35%), Gaps = 79/353 (22%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNT-----LPFYH 69
PLVI + GS DV+G Y++ G + G S P + AA L
Sbjct: 83 PLVIAQGTGSRFQDVDGHAYVN-FLGEYTAGLFGHSHPVIRAAVERALAVGLNLSTQ--- 138
Query: 70 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129
T+ A+ + + F + + V FTNSG+EAN + A +K
Sbjct: 139 ------TENEALFAEAVCDRFPS--IDLVRFTNSGTEANLMALAT------ATAITGRKT 184
Query: 130 FIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 189
+A YHG L+ + P + +
Sbjct: 185 VLAFDGGYHGG-LLNFASGHAPTNAPYHVVLGVY-------------------------- 217
Query: 190 ANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVI 247
N++E +LK AA + EP++GAGG +P + + ++A + L I DEV+
Sbjct: 218 -NDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVM 276
Query: 248 CAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVSPEVSEVIHS 297
RL G + I DL + K + M GA P
Sbjct: 277 T--SRLS--GGGAQEMLGISADLTTLGKYIGGG-MSFGAFGGRRDLMERFDPARD----- 326
Query: 298 QSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 350
G+F+H T++ + ++ + AL R ++ +F+ +
Sbjct: 327 -----GAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLNR 374
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 119 bits (302), Expect = 6e-30
Identities = 96/466 (20%), Positives = 164/466 (35%), Gaps = 120/466 (25%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNT-----LPFYH 69
P +++ EG+Y+Y V+G + +D L + LG PR++ A L P
Sbjct: 39 PFYVKRGEGAYLYTVDGARIVD-LVLAYGPLILGHKHPRVLEAVEEALARGWLYGAP--- 94
Query: 70 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129
+ + LA+++L + F NSG+EA T ++L A G +
Sbjct: 95 ------GEAEVLLAEKILGYVKR--GGMIRFVNSGTEATMTAIRL------ARGYTGRDL 140
Query: 130 FIARQKSYHG---STLIAASLSGLPALHQKFDLP------APFVLHTDCPHYWRYAHPGE 180
+ YHG + L+AA S A H + +P T Y
Sbjct: 141 ILKFDGCYHGSHDAVLVAAG-SA--AAH--YGVPTSAGVPEAVARLTLVTPY-------- 187
Query: 181 TEEEYSTRLANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD 238
N++E L + E + IA I EPVI GVIPP + +Q + ++
Sbjct: 188 ----------NDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESG 237
Query: 239 ILFIADEVICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVS 288
L I DEV+ F RLG ++I+ D++ K + P+GA+ L++
Sbjct: 238 ALLILDEVVTGF-RLG--LEGAQGYFNIEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLT 293
Query: 289 PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV 348
P G + T++ HP++ A + LK +E + + A ++
Sbjct: 294 P------------QGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAA 341
Query: 349 K-AFSDSPIIGEIRGTGLILGTEFADN---------KSPNEPFPPEWGIGAYFGAQCEKH 398
+ + I ++ K+ + +
Sbjct: 342 SEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFY------VKLH------E 389
Query: 399 GMLVRVSGDNIMMSPP------FI---MSPEEVDELISKYGKALKA 435
ML R G I P F E ++ + +LK
Sbjct: 390 EMLRR--GVFI---APSNLEAVFTGLPHQGEALEIAVEGLRSSLKT 430
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 119 bits (301), Expect = 7e-30
Identities = 108/466 (23%), Positives = 171/466 (36%), Gaps = 120/466 (25%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNT-----LPFYH 69
P+ +E+ +G+Y +DV+G KY+D + G + P + A T P
Sbjct: 38 PIAMERGKGAYFWDVDGNKYID-YLAAYGPIITGHAHPHITKAITTAAENGVLYGTP--- 93
Query: 70 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129
T + AK L E A + KV F NSG+EA T +++ A + K
Sbjct: 94 ------TALEVKFAKMLKEAMPA--LDKVRFVNSGTEAVMTTIRV------ARAYTGRTK 139
Query: 130 FIARQKSYHG---STLIAASLSGLPALHQKFDLP------APFVLHTDCPHYWRYAHPGE 180
+ YHG L+AA SG P +
Sbjct: 140 IMKFAGCYHGHSDLVLVAAG-SGPST----LGTPDSAGVPQSIAQEVITVPF-------- 186
Query: 181 TEEEYSTRLANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD 238
NN+E L L + +AA + EP++G G++ P + EKV +V +
Sbjct: 187 ----------NNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAG 236
Query: 239 ILFIADEVICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVS 288
L I DEVI AF R +G D + PDL + K + +PIGA V+
Sbjct: 237 ALVIYDEVITAF-RFM--YGGAQDLLGVTPDLTALGKVIGGG-LPIGAYGGKKEIMEQVA 292
Query: 289 PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV 348
P LG T +G+P S A I L++ ++ + E+++++ + G+
Sbjct: 293 P------------LGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGI 340
Query: 349 K-AFSDSPIIGEIRGTGLILGTEFADN---------KSPNEPFPPEWGIGAYFGAQCEKH 398
+ I + L F N + E F G +F
Sbjct: 341 LEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMF------GKFF------K 388
Query: 399 GMLVRVSGDNIMMSPP------FI---MSPEEVDELISKYGKALKA 435
ML G N+ P F+ + E+++ I G+A A
Sbjct: 389 LMLQE--GVNL---APSKYEAWFLTTEHTKEDIEYTIEAVGRAFAA 429
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 118 bits (298), Expect = 2e-29
Identities = 88/357 (24%), Positives = 151/357 (42%), Gaps = 74/357 (20%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNT-----LPFYH 69
P+V ++ + +Y +DV+G +Y+D G W A G + P ++ A + P
Sbjct: 35 PIVFDRVKDAYAWDVDGNRYID-YVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAP--- 90
Query: 70 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129
LA+ + + + + V F NSG+EA +++ + K
Sbjct: 91 ------CALENVLAEMVNDAVPS--IEMVRFVNSGTEACMAVLRI------MRAYTGRDK 136
Query: 130 FIARQKSYHG---STLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRYAHPGETEEEY 185
I + YHG L+ A SG+ LP +P V P +T
Sbjct: 137 IIKFEGCYHGHADMFLVKAG-SGVAT----LGLPSSPGV-------------PKKTTANT 178
Query: 186 STRLANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA 243
T N+LE + + E P IA I EP++G G I P A + E ++ + ++D L +
Sbjct: 179 LTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVF 238
Query: 244 DEVICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVSPEVSE 293
DEVI F R+ +G +K+ + PDL + K + +P+GA LV+P
Sbjct: 239 DEVITGF-RIA--YGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAP---- 290
Query: 294 VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 350
G T SG+P++ I+ L++ ++ E +++I + DG+ A
Sbjct: 291 --------AGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLA 339
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 117 bits (295), Expect = 5e-29
Identities = 85/357 (23%), Positives = 142/357 (39%), Gaps = 74/357 (20%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNT-----LPFYH 69
PL IE+++G+Y++DV+GK Y+D G W LG + P + A + P
Sbjct: 36 PLFIERADGAYLFDVDGKAYID-YVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAP--- 91
Query: 70 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129
T+ + +A+ + ++ M V NSG+EA + ++L A G + K
Sbjct: 92 ------TEMEVKMAQLVTDLVPT--MDMVRMVNSGTEATMSAIRL------ARGYTGRDK 137
Query: 130 FIARQKSYHG---STLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRYAHPGETEEEY 185
I + YHG L+ A SG P +P V P + +
Sbjct: 138 IIKFEGCYHGHADCLLVKAG-SGALT----LGQPNSPGV-------------PTDFAKHT 179
Query: 186 STRLANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA 243
T N+L + ++ P+ +A I EPV G IPP + ++A+ ++ L I
Sbjct: 180 LTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLII 239
Query: 244 DEVICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVSPEVSE 293
DEV+ F R+ D Y + PDL K + MP+GA ++P
Sbjct: 240 DEVMTGF-RVA--LAGAQDYYHVIPDLTCLGKIIGGG-MPVGAFGGRREVMNALAP---- 291
Query: 294 VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 350
G T SG+P++ A L + + E + ++ G++
Sbjct: 292 --------TGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRH 340
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 113 bits (285), Expect = 9e-28
Identities = 95/354 (26%), Positives = 146/354 (41%), Gaps = 69/354 (19%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAA--ATAQLNTLPFYHSFW 72
PL +E+ +GS VYD++G +Y+D W G + R+V A A A+ T SF
Sbjct: 36 PLFMERGKGSKVYDIDGNEYID-YVLSWGPLIHGHANDRVVEALKAVAERGT-----SF- 88
Query: 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 132
T+ LAK ++E + + V NSG+EA + ++L A G + K +
Sbjct: 89 GAPTEIENKLAKLVIERVPS--IEIVRMVNSGTEATMSALRL------ARGYTGRNKILK 140
Query: 133 RQKSYHG---STLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRYAHPGETEEEYSTR 188
YHG S LI A SG+ LP +P V P + T
Sbjct: 141 FIGCYHGHGDSLLIKAG-SGVAT----LGLPDSPGV-------------PEGVAKNTITV 182
Query: 189 LANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEV 246
N+LE + ++ + IA I EPV G GV+PP + E ++ V ++ L I DEV
Sbjct: 183 AYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEV 242
Query: 247 ICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVSPEVSEVIH 296
+ F R+ + C Y + PDL K + +P+GA V+P
Sbjct: 243 MTGF-RVA--YNCGQGYYGVTPDLTCLGKVIGGG-LPVGAYGGKAEIMRQVAP------- 291
Query: 297 SQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 350
G T SG+P++ A E L + + A + G++
Sbjct: 292 -----SGPIYQAGTLSGNPLAMAAGYETLVQLTP-ESYVEFERKAEMLEAGLRK 339
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 107 bits (270), Expect = 9e-26
Identities = 92/363 (25%), Positives = 145/363 (39%), Gaps = 86/363 (23%)
Query: 16 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNT-----LPFYH 69
P + + EG+YV+D +G +YLD W LG + P+++A L P
Sbjct: 35 PPFLVRGEGAYVWDADGNRYLD-YVMSWGPLILGHAHPKVLARVRETLERGLTFGAP--- 90
Query: 70 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 129
+ + LAK++ + + V F NSG+EA + ++L A G +
Sbjct: 91 ------SPLEVALAKKVKRAYPF--VDLVRFVNSGTEATMSALRL------ARGYTGRPY 136
Query: 130 FIARQKSYHG---STLIAASLSGLPALHQKFDLP------APFVLHTDCPHYWRYAHPGE 180
+ + +YHG L+ A SG +P + T Y
Sbjct: 137 IVKFRGNYHGHADGLLVEAG-SGALT----LGVPSSAGVPEEYAKLTLVLEY-------- 183
Query: 181 TEEEYSTRLANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD 238
N+ E L +LK E IAA I EPV+G GV+ P + + + K Y
Sbjct: 184 ----------NDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYG 232
Query: 239 ILFIADEVICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVS 288
+L IADEV+ F RL FG + +KPDLV+ K L +P A V+
Sbjct: 233 VLLIADEVMTGF-RLA--FGGATELLGLKPDLVTLGKILGGG-LPAAAYAGRREIMEKVA 288
Query: 289 PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIV-EQVNKIAPKFQDG 347
P LG T SG+P++ A + L++ +E + + + + G
Sbjct: 289 P------------LGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAG 336
Query: 348 VKA 350
+K
Sbjct: 337 LKE 339
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 57.9 bits (139), Expect = 3e-09
Identities = 33/256 (12%), Positives = 72/256 (28%), Gaps = 31/256 (12%)
Query: 95 MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154
+ + G A + K + + +T L+G A+
Sbjct: 91 YDYIIPAHQGRGAE--NILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAI- 147
Query: 155 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVI 214
++ ++ W+ L++ I + G + I A ++
Sbjct: 148 ---NIVTEKAFDSETYDDWK-----------GDFDIKKLKENIAQHGADNIVAIVSTVTC 193
Query: 215 GAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF------GRLGTMFGCDKYSIKPDL 268
+ G P + ++V + K++ I + D R + D+
Sbjct: 194 NSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDM 253
Query: 269 VSFAKALS-----SAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIE 323
+A AL+ + IG ++ + E+ TY G +
Sbjct: 254 YKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLA---GRDMA 310
Query: 324 ALKIYKERNIVEQVNK 339
A+ E E+
Sbjct: 311 AMVQGLEEGTEEEYLH 326
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 2e-06
Identities = 50/298 (16%), Positives = 85/298 (28%), Gaps = 94/298 (31%)
Query: 34 KYLD-SLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFW--------NRTTKPSLDL-- 82
KYLD L L + PR ++ + W + SL++
Sbjct: 309 KYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 83 AKELLEMFTASKMAKVFFTNSGSEANDTQV-----KLVWYYN---------NALGRPNKK 128
E +MF VF + L+W+ N L +K
Sbjct: 368 PAEYRKMF---DRLSVF-------PPSAHIPTILLSLIWFDVIKSDVMVVVNKL---HKY 414
Query: 129 KFIARQK-----SYHGSTL-IAASLSGLPALHQK----------FDLPAPFVLHTDCPHY 172
+ +Q S L + L ALH+ FD + D Y
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--QY 472
Query: 173 WRYAHPG------ETEEEYS--TRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPA 224
+ Y+H G E E + + + F+ + +
Sbjct: 473 F-YSHIGHHLKNIEHPERMTLFRMVFLDFR-------------FLEQKIRHDSTAWNASG 518
Query: 225 TYFEKVQAVVKKYDILFIAD------EVICAFG----RLGTMFGCDKYSIKPDLVSFA 272
+ +Q +K Y +I D ++ A ++ C KY+ DL+ A
Sbjct: 519 SILNTLQ-QLKFYK-PYICDNDPKYERLVNAILDFLPKIEENLICSKYT---DLLRIA 571
Score = 39.1 bits (90), Expect = 0.003
Identities = 48/365 (13%), Positives = 96/365 (26%), Gaps = 133/365 (36%)
Query: 150 LPALHQKF----------DLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILK 199
L F D+P + + H + T L +L
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII-----MSKDAVSGTLR---LFWTLLS 73
Query: 200 EGPETIAAFIAEPV----------IGAGGVIPPPAT--YFEKVQ------AVVKKYDI-- 239
+ E + F+ E + I P T Y E+ V KY++
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 240 --LFIA----------DEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSA--------- 278
++ + + G + G K + + S
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDG----VLGSGK-TW---VA--LDVCLSYKVQCKMDFK 183
Query: 279 --YMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT-YSGHPVSCAVAIEALKIYKERNIVE 335
++ + SPE V+ L +T S H + + I +++ R +
Sbjct: 184 IFWLNLKNCN-SPE--TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 336 QVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADN-KSPNEPFPPEWGIGAYFGAQ 394
+ + L+L N ++ F
Sbjct: 241 KPYENCL----------------------LVL-----LNVQNAK--------AWNAFNLS 265
Query: 395 CEKHGMLV---------RVSGDN----IMMSPPFIMSPEEVDELISKYGKALKATEERVK 441
C+ +L+ +S + ++P+EV L+ KY + R +
Sbjct: 266 CK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY------LDCRPQ 316
Query: 442 ELKSQ 446
+L +
Sbjct: 317 DLPRE 321
Score = 33.7 bits (76), Expect = 0.16
Identities = 26/172 (15%), Positives = 50/172 (29%), Gaps = 44/172 (25%)
Query: 290 EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK----------IYKERNIVEQVNK 339
E E + + L F F + C + K I ++ V +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDN---FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 340 I----APKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC 395
+ K ++ V+ F L + +F + E P Y
Sbjct: 67 LFWTLLSKQEEMVQKFV---------EEVLRINYKFLMSPIKTEQRQPSMMTRMYI---- 113
Query: 396 EKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATEERVKELKSQQ 447
E+ R+ DN + + + + +L +AL EL+ +
Sbjct: 114 EQRD---RLYNDNQVFAKYNVSRLQPYLKLR----QAL-------LELRPAK 151
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 4e-06
Identities = 65/443 (14%), Positives = 123/443 (27%), Gaps = 158/443 (35%)
Query: 31 NGKKYLDSLAGLWCTALGGSEP---RLVAAATAQLNTLP---------FYHSF----W-- 72
N Y + L L+ T L+ + L+ L F W
Sbjct: 165 NTDDYFEELRDLYQT----YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 73 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYN--NALG-RPNKKK 129
N + P D + S + G Q L Y LG P + +
Sbjct: 221 NPSNTPDKD--------YLLS--IPISCPLIGV----IQ--LAHYVVTAKLLGFTPGELR 264
Query: 130 FIARQKSYHGSTLIAA---------------SLSGLPAL-------HQKF---DLPAPFV 164
+ + H L+ A + L ++ + LP P +
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP-PSI 323
Query: 165 LHTDCPHYWRYAHP-----GETEEEYSTRLANNLEDLILK---EGPETIAAFIA---EP- 212
L + P T+E+ ++D + K P I+
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQ--------VQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 213 --VIGAGGVIPPPATY-----FEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIK 265
V+ +G PP + Y K +A G D+ I
Sbjct: 376 NLVV-SG---PPQSLYGLNLTLRKAKAPS-----------------------GLDQSRIP 408
Query: 266 PDLVSFAK---ALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGH----PVSC 318
F++ S+ ++P+ + S + + L + +++ PV
Sbjct: 409 -----FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV--KNNVSFNAKDIQIPVYD 461
Query: 319 AVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSDSPII----GEI----------- 360
L++ IV+ + + P + F + I+ G
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIR-LPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK 520
Query: 361 RGTG--LILGTEFADNKSPNEPF 381
GTG +I+ + +P++ +
Sbjct: 521 DGTGVRVIVAGTL--DINPDDDY 541
Score = 45.4 bits (107), Expect = 4e-05
Identities = 64/403 (15%), Positives = 117/403 (29%), Gaps = 130/403 (32%)
Query: 1 MLAPFTAGW-QSTDVHPLV--IEKSEGSYVYDVNG--KKYLDSLAGLWCTALGGSEPRLV 55
L F + + D+H L + + + + K Y+ + S L
Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 56 AAATA-----------QLNTLPF----------YHSFWNRTTKPSLDLAKELLEMFTASK 94
A Q NT + YH + + E L +
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL----VGDLIKFSAETLSELIRTT 202
Query: 95 M-AKVFFTNSGSEANDTQVKLV-WYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPA 152
+ A+ FT + ++ W L P+ K Y L++ +S
Sbjct: 203 LDAEKVFTQG--------LNILEW-----LENPSN----TPDKDY----LLSIPISC--- 238
Query: 153 LHQKFDLPAPFVLHTDCPHYWRYA-----HPGETEEEYSTRLANNLEDLILKEGPETIAA 207
P + HY A PGE + + L+ A
Sbjct: 239 ---------PLIGVIQLAHYVVTAKLLGFTPGELRSYLKG-ATGHSQGLV-------TAV 281
Query: 208 FIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILF-IADEVICAFGRLGTMFGCDKYSIKP 266
IAE ++F +V K +LF I A+ S+ P
Sbjct: 282 AIAE----TDSW----ESFFV---SVRKAITVLFFIGVRCYEAYPNT---------SLPP 321
Query: 267 DLVSFAKAL---SSAYMPIGAILVS----PEVSEVIHSQSNT-LGSFSH-------G--- 308
++ + + M + +S +V + + +++N+ L + G
Sbjct: 322 SILEDSLENNEGVPSPM----LSISNLTQEQVQDYV-NKTNSHLPAGKQVEISLVNGAKN 376
Query: 309 FTYSGHPVS-CAVAIEALKIYKERNIVEQVNKI-----APKFQ 345
SG P S + + K K + ++Q ++I KF
Sbjct: 377 LVVSGPPQSLYGLNLTLRKA-KAPSGLDQ-SRIPFSERKLKFS 417
Score = 44.7 bits (105), Expect = 7e-05
Identities = 56/295 (18%), Positives = 84/295 (28%), Gaps = 121/295 (41%)
Query: 14 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-FYHS-- 70
H +V K G + L G A G S+ + A A A+ ++ F+ S
Sbjct: 247 AHYVVTAKLLG-----FTPGELRSYLKG----ATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 71 ------FW--NRTTK--PSLDLAKELLEMF------TASKMAKVFFTNSGSEANDTQV-K 113
F+ R + P+ L +LE S M + S QV
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI----SN--LTQEQVQD 351
Query: 114 LVWYYNNALGRPNKKKFIARQKSYHGSTLI-----------AASLSGL------------ 150
V N+ L K+ I+ L+ SL GL
Sbjct: 352 YVNKTNSHLP-AGKQVEIS---------LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG 401
Query: 151 ------------PALHQKFDLP--APFVLHTDCPHYWRYAHPGETEEE------------ 184
+F LP +PF H+ H A ++
Sbjct: 402 LDQSRIPFSERKLKFSNRF-LPVASPF--HS---HLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 185 ----YSTRLANNLE-----------DLILKEGP---ETIAAFIAEPVI--GAGGV 219
Y T ++L D I++ P ET F A ++ G GG
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDCIIRL-PVKWETTTQFKATHILDFGPGGA 509
Score = 42.3 bits (99), Expect = 3e-04
Identities = 44/298 (14%), Positives = 70/298 (23%), Gaps = 110/298 (36%)
Query: 95 MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 154
M + S + + VW N A ++ T G L
Sbjct: 1631 MGMDLYKTSKA------AQDVW--NRA-------------DNHFKDTY------GFSILD 1663
Query: 155 QKFDLPAPFVLHTDCPH----YWRY-AHPGETEEEYSTRLANNLEDL------ILKEGPE 203
+ P +H Y A ET + + +++ +
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Query: 204 -----T-----------IAAFIAEPVIGAGGVIPPPATYF------EKVQAVVKKY---- 237
T AAF E + + G+IP A F E Y
Sbjct: 1724 GLLSATQFTQPALTLMEKAAF--E-DLKSKGLIPADA-TFAGHSLGE--------YAALA 1771
Query: 238 ---DILFIAD--EVICAFGRL------GTMFGCDKYSIKPDLVSFAKALSSAYMP--IGA 284
D++ I EV+ G G Y + A P + A
Sbjct: 1772 SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM------------IAINPGRVAA 1819
Query: 285 ILVSPEVSEVIHSQSNTLGSF-------SHGFTY--SGHPVSCAVAIEALKIYKERNI 333
+ V+ G Y +G + L K + I
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Score = 37.0 bits (85), Expect = 0.015
Identities = 46/314 (14%), Positives = 92/314 (29%), Gaps = 122/314 (38%)
Query: 173 WRYA--HPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGG-VIP---PPATY 226
W A H ++ Y + + I+ P + G G I +
Sbjct: 1646 WNRADNH---FKDTYGFSILD-----IVINNPVNLTIHFG----GEKGKRIRENYSAMIF 1693
Query: 227 FEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAIL 286
V +K I +E ++ F +K + F + P A+
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSY-----TFRSEKGLL--SATQFTQ-------P--ALT 1737
Query: 287 -VSPEVSEVIHSQSNTLGSFSHGFTYSGHPV---S--CAVA----IE-ALKIYKER---- 331
+ E + S+ G T++GH + + ++A IE +++ R
Sbjct: 1738 LMEKAAFEDLKSK----GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTM 1793
Query: 332 -NIVEQ------------VN--KIAPKF-QDGVKAFSDSPIIGEI-RGTGLILGTEFA-D 373
V + +N ++A F Q+ ++ ++ + + TG ++ E
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY-----VVERVGKRTGWLV--EIVNY 1846
Query: 374 NKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKAL 433
N N+ Q V +GD +AL
Sbjct: 1847 N-VENQ--------------Q------YV-AAGDL----------------------RAL 1862
Query: 434 KATEERVKELKSQQ 447
+ +K Q+
Sbjct: 1863 DTVTNVLNFIKLQK 1876
Score = 28.1 bits (62), Expect = 8.4
Identities = 39/197 (19%), Positives = 61/197 (30%), Gaps = 69/197 (35%)
Query: 288 SPEVSEV-----IHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAP 342
S +V H + +T G FS +PV+ + K + I E N A
Sbjct: 1639 SKAAQDVWNRADNHFK-DTYG-FSILDIVINNPVNLTIHFGG---EKGKRIRE--NYSAM 1691
Query: 343 KFQDGVKAFSDS-PIIGEI---------RG-TGLILGTEFADNKSPNEPFPP-------- 383
F+ V + I EI R GL+ T+F P
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ---------PALTLMEKA 1742
Query: 384 ------EWGI---GAYF-GAQCEKH--G---MLVRVSGDNIMMSPPFIMSPEEVDELISK 428
G+ A F G H G L ++ +MS E + E++
Sbjct: 1743 AFEDLKSKGLIPADATFAG-----HSLGEYAALASLAD---------VMSIESLVEVVFY 1788
Query: 429 YGKALKATEERVKELKS 445
G ++ R + +S
Sbjct: 1789 RGMTMQVAVPRDELGRS 1805
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 31.8 bits (73), Expect = 0.42
Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 26/141 (18%)
Query: 228 EKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPD-LVSFA-KALSSAYMP--IG 283
+ KK ++ F+ D V AF F ++ D +++ + K L+ P I
Sbjct: 164 MMIGEFCKKNNMFFVCDCV-SAFL--ADPFNMNECGA--DVMITGSQKVLA---CPPGIS 215
Query: 284 AILVSPEVSEVIHSQSNT---------LGSFSHGFTYSGHPVSCAVAI-EALKIYKERNI 333
I+++P E + L + G T V + I E LK K+
Sbjct: 216 VIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGG 275
Query: 334 VEQV----NKIAPKFQDGVKA 350
+ A F+ +K
Sbjct: 276 ADAEVARIASQAADFRAKIKD 296
>2x47_A Macro domain-containing protein 1; signaling protein, signal
transduction, estrogen signaling; 1.70A {Homo sapiens}
Length = 235
Score = 30.0 bits (68), Expect = 1.1
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 14/65 (21%)
Query: 157 FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA----NNLEDLILKEGPETIAAFIAEP 212
+ LPA +V+HT P + + E L ++L+ L+L+ ++ AF P
Sbjct: 126 YRLPAKYVIHTVGPIAYGEPSASQAAE-----LRSCYLSSLD-LLLEHRLRSV-AF---P 175
Query: 213 VIGAG 217
I G
Sbjct: 176 CISTG 180
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 30.2 bits (69), Expect = 1.2
Identities = 30/148 (20%), Positives = 48/148 (32%), Gaps = 27/148 (18%)
Query: 218 GVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KAL 275
GV+ P E + A+ K+ LF D V G F + D K L
Sbjct: 138 GVLNP----AEAIGALAKEAGALFFLDAV-TTLG--MLPFSMRAMGV--DYAFTGSQKCL 188
Query: 276 SSAYMP--IGAILVSPEVSEVIHSQ-------SNTLGSFSHGFTYSGHPVSCAVAI-EAL 325
S P + I S E + + + + G + PV A+ EAL
Sbjct: 189 S---APPGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEAL 245
Query: 326 KIYKE---RNIVEQVNKIAPKFQDGVKA 350
+ E + ++ + +KA
Sbjct: 246 DLVLEEGVAARERRAREVYAWVLEELKA 273
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: PLP; 1.70A {Nostoc SP}
SCOP: c.67.1.3
Length = 393
Score = 29.5 bits (67), Expect = 2.5
Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 28/143 (19%)
Query: 228 EKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMP--IG 283
E V + +++ L + D V + G G D + + DL K L
Sbjct: 179 EGVGELCREFGTLLLVDTV-TSLG--GVPIFLDAWGV--DLAYSCSQKGLG---CSPGAS 230
Query: 284 AILVSPEVSEVIHSQSNTLGSF------------SHGFTYSGHPVSCAVAI-EALKIYKE 330
+S E + + + ++ S + P++ A+ EAL++ +
Sbjct: 231 PFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQ 290
Query: 331 R---NIVEQVNKIAPKFQDGVKA 350
N ++ K + ++
Sbjct: 291 EGLANCWQRHQKNVEYLWERLED 313
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A
{Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 29.1 bits (66), Expect = 2.6
Identities = 23/143 (16%), Positives = 40/143 (27%), Gaps = 28/143 (19%)
Query: 228 EKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMP--IG 283
+ + A+V + I D V +FG G + D+ K L P +
Sbjct: 154 DAIGALVSAHGAYLIVDAV-SSFG--GMKTHPEDCKA--DIYVTGPNKCLG---APPGLT 205
Query: 284 AILVSPEVSEVIHSQSNTLGSF------------SHGFTYSGHPVSCAVAI-EALKIYKE 330
+ VS + + + VS + AL +Y
Sbjct: 206 MMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLN 265
Query: 331 R---NIVEQVNKIAPKFQDGVKA 350
+ + A + GV A
Sbjct: 266 EGPEAVWARHALTAKAMRAGVTA 288
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Length = 393
Score = 29.1 bits (66), Expect = 2.8
Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 31/146 (21%)
Query: 228 EKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMP--IG 283
+ + +Y L + D V + G G D+ I D++ + K L+ P I
Sbjct: 168 DGFGELCHRYQCLLLVDSV-ASLG--GVPIYMDQQGI--DIMYSSSQKVLN---APPGIS 219
Query: 284 AILVSPEVSEVIHSQSNTLGSF---------------SHGFTYSGHPVSCAVAI-EALKI 327
I + + ++S+ SF + PV+ + E+L +
Sbjct: 220 LISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLAL 279
Query: 328 YKER---NIVEQVNKIAPKFQDGVKA 350
E+ N + + ++
Sbjct: 280 IAEQGLENCWRRHREATAHLHKHLQE 305
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.9
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 17/43 (39%)
Query: 19 IEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQ 61
++K + S K Y D S P L AT +
Sbjct: 22 LKKLQASL------KLYAD-----------DSAPALAIKATME 47
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 29.2 bits (66), Expect = 3.1
Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 31/146 (21%)
Query: 228 EKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMP--IG 283
E V A+ +++ L I D V + G G D++ I D + K L P I
Sbjct: 164 EGVGALCHQHNCLLIVDTV-ASLG--GAPMFMDRWEI--DAMYTGSQKVLG---APPGIT 215
Query: 284 AILVSPEVSEVIHSQSNTLGSF------------SHGFTYSGH---PVSCAVAI-EALKI 327
+ S E ++ + + G H + + EA+ +
Sbjct: 216 PVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAM 275
Query: 328 YKER---NIVEQVNKIAPKFQDGVKA 350
E ++ + A + G++
Sbjct: 276 ACEEGLPALIARHEDCAKRLYRGLQD 301
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural
genomics consortium, SGC, transferase, PARP14 macro 2;
HET: AR6; 2.20A {Homo sapiens}
Length = 221
Score = 28.5 bits (64), Expect = 3.3
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 157 FDLPAPFVLHTDCPHYWRYAHPGETEEE 184
++L +VLH P + G T
Sbjct: 107 WNLDCRYVLHVVAPEW----RNGSTSSL 130
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat
repeat, VON willebrand factor A, rossmann fold, midas
motif', RNA binding protein; 1.95A {Xenopus laevis}
SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Length = 538
Score = 29.1 bits (64), Expect = 3.7
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 138 HGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192
GST A + + D+ F++ TDC HP ++Y ++
Sbjct: 442 MGSTDCALPMLWAQKTNTAADI---FIVFTDCETNVEDVHPATALKQYREKMGIP 493
>3frm_A Uncharacterized conserved protein; APC61048, staphylococcus
epidermidis ATCC structural genomics, PSI-2, protein
structure initiative; HET: MES; 2.32A {Staphylococcus
epidermidis}
Length = 254
Score = 28.4 bits (63), Expect = 4.1
Identities = 22/156 (14%), Positives = 48/156 (30%), Gaps = 12/156 (7%)
Query: 67 FYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPN 126
+ + W T P+++ + +E+ K N S + + N +
Sbjct: 37 YASNTWIYKTMPTMNQWLKDIEVQ------KKMHLNQSSY----HLSFSFPANEKIDEVL 86
Query: 127 KKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWR--YAHPGETEEE 184
+K L L L +K D+ V + Y A +
Sbjct: 87 LEKIRELGFQIGVLELYVIEAKALKELSRKRDVDIQLVSSNNINDYLHVYDAFARPFGDS 146
Query: 185 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVI 220
Y+ + ++ + E + A++ +G +I
Sbjct: 147 YANMVKQHIYSSYNLDDIERLVAYVNHQPVGIVDII 182
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 28.4 bits (64), Expect = 4.6
Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 31/144 (21%)
Query: 228 EKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMP--IG 283
++ V K++D L D V A G G DK+ + D+V + KA +P +
Sbjct: 166 PELAKVAKEHDKLVFVDAV-SAMG--GADIKFDKWGL--DVVFSSSQKAFG---VPPGLA 217
Query: 284 AILVSPEVSEVIHSQSNTLGSF------------SHGFTYSGHPVSCAVAI-EALKIYKE 330
S E+ + + T S P+ I AL+I ++
Sbjct: 218 IGAFSERFLEIA--EKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEK 275
Query: 331 RNIVEQVNK----IAPKFQDGVKA 350
E+ + A ++GV+
Sbjct: 276 MGGKEKWLEMYEKRAKMVREGVRE 299
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 28.4 bits (64), Expect = 5.6
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
Query: 228 EKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMP--IG 283
+ + + D LFI D V G G D++ I D K LS +P +
Sbjct: 156 KAIGEACRTEDALFIVDAV-ATIG--GCEVKVDEWKI--DAAIGGTQKCLS---VPSGMA 207
Query: 284 AILVSPEVSEVIHS 297
I + V++VI +
Sbjct: 208 PITYNERVADVIAA 221
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON
willebrand factor A domain, beta- RNA binding protein;
1.89A {Deinococcus radiodurans}
Length = 535
Score = 28.3 bits (62), Expect = 5.9
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 134 QKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 192
Q G T A + D FV++TD + HP ++Y+ ++
Sbjct: 434 QSVSFGGTDCAQPILWAAQERLDVDT---FVVYTDNETWAGQVHPTVALDQYAQKMGRA 489
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 27.9 bits (63), Expect = 7.0
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 228 EKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMP-IGA 284
++V A+ +Y +I D + +FG G I D + + K + +P
Sbjct: 151 DEVGALAHRYGKTYIVDAM-SSFG--GIPMDIAALHI--DYLISSANKCIQG--VPGFAF 203
Query: 285 ILVSPEVSEVIHSQSNTL 302
++ + S +L
Sbjct: 204 VIAREQKLAACKGHSRSL 221
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein,
oxidoreductase, thiamine diphosphate, thiamine
pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A
{Escherichia coli} PDB: 2jgd_B*
Length = 933
Score = 28.3 bits (64), Expect = 7.1
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 416 IMSPEEVDELISKYGKALKATEERVKELKSQQ 447
+ + E+ E+++ Y AL A + V E +
Sbjct: 496 VATLEDATEMVNLYRDALDAGDCVVAEWRPMN 527
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 28.0 bits (63), Expect = 7.5
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 228 EKVQAVVKKYDILFIADEV 246
E V ++ +++D++ I DEV
Sbjct: 197 ELVASLCQQHDVVCITDEV 215
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 27.7 bits (62), Expect = 7.9
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 228 EKVQAVVKKYDILFIADEV 246
E V + KK+++L ++DEV
Sbjct: 205 EVVANLCKKWNVLCVSDEV 223
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase,
polymorphism, rotamase, structural genomics, structural
genomics consortium, SGC; 1.80A {Homo sapiens}
Length = 102
Score = 26.4 bits (59), Expect = 8.7
Identities = 8/15 (53%), Positives = 8/15 (53%), Gaps = 1/15 (6%)
Query: 215 GAGGVIPPPAT-YFE 228
GA IP AT FE
Sbjct: 76 GAPPKIPGGATLVFE 90
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 27.7 bits (62), Expect = 8.7
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 228 EKVQAVVKKYDILFIADEV 246
+ + K++++ I+DEV
Sbjct: 224 TTLGNICVKHNVVIISDEV 242
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 27.6 bits (62), Expect = 8.8
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 228 EKVQAVVKKYDILFIADEV 246
+ + + K+D L I+DEV
Sbjct: 190 QVIADLCVKHDTLCISDEV 208
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 27.6 bits (62), Expect = 9.7
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 228 EKVQAVVKKYDILFIADEV 246
+ + +++ I DEV
Sbjct: 183 AAIAEIAVAANLVVITDEV 201
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 27.3 bits (61), Expect = 9.8
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 11/50 (22%)
Query: 408 NIMMSP-----PFIMSPEE----VDEL--ISKYGKALKATEERVKELKSQ 446
N + + S E V E+ + K+ A K E K + ++
Sbjct: 134 NAIYIRQGQIDAILESDEAREKVVREVLNLDKFETAYKKLSELKKTINNR 183
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.403
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,053,085
Number of extensions: 440903
Number of successful extensions: 1524
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1319
Number of HSP's successfully gapped: 94
Length of query: 447
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 350
Effective length of database: 3,993,456
Effective search space: 1397709600
Effective search space used: 1397709600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)