Query 013205
Match_columns 447
No_of_seqs 305 out of 485
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 06:10:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6p_A Baculoviral IAP repeat- 99.4 1.5E-13 5.1E-18 139.4 4.9 50 327-389 37-86 (345)
2 2yho_A E3 ubiquitin-protein li 98.6 1.9E-08 6.5E-13 81.1 3.2 43 404-447 7-49 (79)
3 2ea5_A Cell growth regulator w 98.5 1.2E-08 4.2E-13 80.0 -1.3 36 410-445 9-44 (68)
4 3mup_A Baculoviral IAP repeat- 98.3 1.1E-07 3.7E-12 83.3 1.2 55 328-395 52-106 (122)
5 4ic3_A E3 ubiquitin-protein li 98.3 2.8E-07 9.6E-12 72.9 3.3 41 405-446 14-54 (74)
6 3hl5_A Baculoviral IAP repeat- 98.3 2.9E-07 1E-11 77.2 2.7 50 327-389 43-92 (95)
7 2vje_B MDM4 protein; proto-onc 98.2 1.6E-07 5.5E-12 72.3 -0.6 31 416-446 7-39 (63)
8 3d9t_A Baculoviral IAP repeat- 98.1 4.8E-07 1.6E-11 76.1 1.4 49 328-389 46-94 (97)
9 1jd5_A DIAP1, apoptosis 1 inhi 98.1 4.8E-07 1.6E-11 79.4 1.4 50 328-390 58-107 (124)
10 2i3h_A Baculoviral IAP repeat- 98.1 7.9E-07 2.7E-11 78.9 2.3 51 327-390 79-129 (133)
11 2vje_A E3 ubiquitin-protein li 98.1 6.9E-07 2.4E-11 68.9 0.8 30 417-446 9-40 (64)
12 2ecg_A Baculoviral IAP repeat- 98.1 8.5E-07 2.9E-11 70.1 1.1 39 406-445 16-54 (75)
13 1g73_C Inhibitors of apoptosis 97.9 2.5E-06 8.5E-11 74.6 1.9 51 327-390 57-107 (121)
14 2vm5_A Baculoviral IAP repeat- 97.8 3E-06 1E-10 72.4 0.5 46 328-386 54-99 (106)
15 2qfa_A Baculoviral IAP repeat- 97.6 2.4E-05 8.3E-10 69.9 3.6 52 319-383 43-94 (142)
16 2poi_A Baculoviral IAP repeat- 97.1 0.00015 5.2E-09 60.5 2.2 32 328-360 53-84 (94)
17 1se0_A Apoptosis 1 inhibitor; 97.1 0.00012 4.2E-09 63.4 1.6 44 327-383 45-88 (116)
18 3m1d_A Baculoviral IAP repeat- 97.1 0.00011 3.6E-09 60.4 1.0 32 328-360 44-75 (85)
19 2qra_D XIAP, baculoviral IAP r 97.0 0.0002 6.9E-09 61.6 2.2 32 328-360 70-101 (111)
20 3siq_A Apoptosis 1 inhibitor; 96.8 0.00045 1.5E-08 61.4 2.5 43 326-381 66-108 (136)
21 1i4o_C X-linked IAP, baculovir 96.8 0.00037 1.3E-08 62.3 2.0 32 328-360 76-107 (141)
22 4ayc_A E3 ubiquitin-protein li 96.4 0.0013 4.3E-08 57.5 2.5 33 410-444 48-80 (138)
23 2ecn_A Ring finger protein 141 96.1 0.00058 2E-08 52.3 -1.1 27 417-445 16-42 (70)
24 3fl2_A E3 ubiquitin-protein li 96.1 0.0037 1.3E-07 53.3 3.6 34 409-444 46-79 (124)
25 2y1n_A E3 ubiquitin-protein li 95.9 0.0026 8.8E-08 65.4 2.0 27 417-444 333-359 (389)
26 1z6u_A NP95-like ring finger p 95.7 0.0026 8.7E-08 56.8 1.0 34 409-444 72-105 (150)
27 2ysj_A Tripartite motif-contai 95.7 0.0012 4E-08 49.6 -1.1 32 411-444 16-47 (63)
28 2d8t_A Dactylidin, ring finger 95.7 0.003 1E-07 48.6 1.2 29 416-445 15-43 (71)
29 2ysl_A Tripartite motif-contai 95.6 0.0011 3.7E-08 51.0 -1.4 27 417-444 21-47 (73)
30 2ecj_A Tripartite motif-contai 95.6 0.00075 2.6E-08 49.4 -2.3 27 417-444 16-42 (58)
31 1bor_A Transcription factor PM 95.4 0.0025 8.5E-08 47.2 -0.0 30 415-445 5-34 (56)
32 1chc_A Equine herpes virus-1 r 95.2 0.0049 1.7E-07 46.6 1.1 28 416-444 5-33 (68)
33 2yur_A Retinoblastoma-binding 94.9 0.0035 1.2E-07 48.7 -0.6 32 411-444 11-43 (74)
34 2djb_A Polycomb group ring fin 94.9 0.003 1E-07 48.7 -1.1 32 411-444 11-43 (72)
35 1jm7_A BRCA1, breast cancer ty 94.8 0.0067 2.3E-07 50.2 0.8 33 410-444 16-48 (112)
36 2csy_A Zinc finger protein 183 94.7 0.0034 1.2E-07 49.4 -1.1 28 416-444 15-42 (81)
37 2y43_A E3 ubiquitin-protein li 94.7 0.013 4.5E-07 47.8 2.2 35 408-444 15-50 (99)
38 2ecv_A Tripartite motif-contai 94.6 0.0071 2.4E-07 47.2 0.5 27 417-444 20-46 (85)
39 2ecw_A Tripartite motif-contai 94.5 0.01 3.5E-07 46.3 1.1 27 417-444 20-46 (85)
40 2ct2_A Tripartite motif protei 94.4 0.011 3.8E-07 46.6 1.1 27 417-444 16-46 (88)
41 3lrq_A E3 ubiquitin-protein li 94.1 0.018 6E-07 47.5 1.8 36 407-444 14-50 (100)
42 2egp_A Tripartite motif-contai 94.0 0.0075 2.6E-07 46.8 -0.5 28 417-445 13-40 (79)
43 2ecm_A Ring finger and CHY zin 94.0 0.018 6.3E-07 41.4 1.6 27 417-444 6-36 (55)
44 2ckl_A Polycomb group ring fin 94.0 0.016 5.4E-07 48.1 1.3 33 410-444 10-43 (108)
45 2kiz_A E3 ubiquitin-protein li 93.8 0.0092 3.1E-07 45.3 -0.4 27 417-444 15-44 (69)
46 1jm7_B BARD1, BRCA1-associated 93.8 0.021 7.3E-07 48.1 1.8 37 407-445 14-51 (117)
47 2ea6_A Ring finger protein 4; 93.4 0.014 4.8E-07 43.8 -0.1 28 416-444 15-49 (69)
48 2ect_A Ring finger protein 126 93.0 0.019 6.4E-07 44.6 0.1 28 417-445 16-46 (78)
49 2ecy_A TNF receptor-associated 92.9 0.013 4.5E-07 44.2 -0.9 28 416-444 15-42 (66)
50 2xeu_A Ring finger protein 4; 92.8 0.02 6.8E-07 42.3 0.0 27 417-444 4-37 (64)
51 3l11_A E3 ubiquitin-protein li 92.8 0.027 9.3E-07 47.1 0.8 28 417-445 16-43 (115)
52 3ng2_A RNF4, snurf, ring finge 92.7 0.02 6.8E-07 43.4 -0.1 27 417-444 11-44 (71)
53 2ep4_A Ring finger protein 24; 92.6 0.014 5E-07 44.8 -1.0 27 417-444 16-45 (74)
54 1iym_A EL5; ring-H2 finger, ub 92.4 0.04 1.4E-06 39.7 1.3 27 417-444 6-36 (55)
55 1g25_A CDK-activating kinase a 92.4 0.023 7.8E-07 42.7 -0.2 27 417-444 4-35 (65)
56 1x4j_A Ring finger protein 38; 92.2 0.047 1.6E-06 42.1 1.5 28 416-444 23-53 (75)
57 3ztg_A E3 ubiquitin-protein li 91.8 0.035 1.2E-06 44.4 0.3 27 417-444 14-41 (92)
58 2ckl_B Ubiquitin ligase protei 91.7 0.055 1.9E-06 48.1 1.5 33 410-444 49-82 (165)
59 1rmd_A RAG1; V(D)J recombinati 91.3 0.071 2.4E-06 44.6 1.8 32 411-444 19-50 (116)
60 2l0b_A E3 ubiquitin-protein li 90.7 0.058 2E-06 43.5 0.6 27 417-444 41-70 (91)
61 1e4u_A Transcriptional repress 90.6 0.02 6.7E-07 45.7 -2.3 27 417-444 12-42 (78)
62 1t1h_A Gspef-atpub14, armadill 90.4 0.086 2.9E-06 40.8 1.3 28 416-444 8-35 (78)
63 3hct_A TNF receptor-associated 89.9 0.097 3.3E-06 44.1 1.3 27 417-444 19-45 (118)
64 1wim_A KIAA0161 protein; ring 86.5 0.13 4.3E-06 41.6 -0.2 28 416-444 5-35 (94)
65 3knv_A TNF receptor-associated 85.1 0.28 9.6E-06 43.0 1.4 32 411-444 27-58 (141)
66 1v87_A Deltex protein 2; ring- 79.2 0.48 1.7E-05 39.1 0.6 26 418-444 27-70 (114)
67 4ap4_A E3 ubiquitin ligase RNF 74.7 0.63 2.2E-05 38.8 0.1 28 416-444 72-106 (133)
68 2kr4_A Ubiquitin conjugation f 74.3 0.49 1.7E-05 37.8 -0.7 30 412-443 11-40 (85)
69 2kre_A Ubiquitin conjugation f 72.1 0.6 2.1E-05 38.6 -0.7 26 417-443 30-55 (100)
70 2c2l_A CHIP, carboxy terminus 70.3 1.5 5.2E-05 41.1 1.6 27 416-443 208-234 (281)
71 2ecl_A Ring-box protein 2; RNF 70.3 1.3 4.5E-05 34.7 1.0 25 418-443 17-56 (81)
72 2yu4_A E3 SUMO-protein ligase 64.0 2.6 8.7E-05 34.0 1.5 27 416-443 7-34 (94)
73 1wgm_A Ubiquitin conjugation f 62.7 2.5 8.6E-05 34.6 1.3 26 417-443 23-49 (98)
74 3dpl_R Ring-box protein 1; ubi 55.0 4.6 0.00016 33.7 1.6 25 418-443 39-81 (106)
75 2d8s_A Cellular modulator of i 50.5 5.9 0.0002 31.3 1.5 22 417-438 16-44 (80)
76 2jun_A Midline-1; B-BOX, TRIM, 48.3 3.9 0.00013 32.9 0.1 27 417-444 4-33 (101)
77 2f42_A STIP1 homology and U-bo 48.0 6.2 0.00021 36.1 1.4 27 416-443 106-132 (179)
78 1vyx_A ORF K3, K3RING; zinc-bi 44.6 3.9 0.00013 30.6 -0.4 20 417-436 7-26 (60)
79 2zet_C Melanophilin; complex, 31.8 23 0.00077 31.6 2.4 29 416-445 68-101 (153)
80 4a0k_B E3 ubiquitin-protein li 30.6 11 0.00037 32.2 0.0 16 428-444 78-93 (117)
81 1zbd_B Rabphilin-3A; G protein 24.6 28 0.00097 30.3 1.6 30 415-445 54-88 (134)
No 1
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.39 E-value=1.5e-13 Score=139.40 Aligned_cols=50 Identities=18% Similarity=0.357 Sum_probs=45.3
Q ss_pred ccccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhHHHH
Q 013205 327 AHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVW 389 (447)
Q Consensus 327 ~~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~~~~~p~~v~~~~~~e~~qe~~ 389 (447)
..|-+.=.+||+.|.+ |+++||||+||+||+|+ | .+|+.+||+||+++++
T Consensus 37 ~~D~v~Cf~C~~~l~~-We~~DdP~~eH~~~~p~--------C----~f~~~~kg~~~i~~~~ 86 (345)
T 3t6p_A 37 RNDDVKCFSCDGGLRC-WESGDDPWVEHAKWFPR--------C----EFLIRMKGQEFVDEIQ 86 (345)
T ss_dssp STTCEEETTTCCEECC-CCTTCCHHHHHHHHCTT--------C----HHHHHHHCHHHHHHHH
T ss_pred CCCeEEecCCCCCccC-CCCCCCHHHHHHHhCCC--------C----ccHHHhccHHHHHHHH
Confidence 3788888999999999 99999999999999999 9 8888999999987655
No 2
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.59 E-value=1.9e-08 Score=81.06 Aligned_cols=43 Identities=28% Similarity=0.647 Sum_probs=37.0
Q ss_pred ccHHHHHHhhhhcccccccccCcceEEEecCCcccccccccCCC
Q 013205 404 YSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHLTL 447 (447)
Q Consensus 404 ~~~~~~~~l~~e~~~C~iC~~~~~~vv~lPC~H~~~C~~Ca~~l 447 (447)
..+++.++++++. .|+||+++..++|++||||.+.|.+|+.++
T Consensus 7 ~l~~~~~~l~~~~-~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~ 49 (79)
T 2yho_A 7 VLQEKLRKLKEAM-LCMVCCEEEINSTFCPCGHTVCCESCAAQL 49 (79)
T ss_dssp THHHHHHHHHHHT-BCTTTSSSBCCEEEETTCBCCBCHHHHTTC
T ss_pred HHHHHHHcCCCCC-EeEEeCcccCcEEEECCCCHHHHHHHHHhc
Confidence 3556777888775 999999999999999999999999998753
No 3
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=1.2e-08 Score=80.00 Aligned_cols=36 Identities=39% Similarity=0.676 Sum_probs=30.9
Q ss_pred HHhhhhcccccccccCcceEEEecCCcccccccccC
Q 013205 410 ERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHL 445 (447)
Q Consensus 410 ~~l~~e~~~C~iC~~~~~~vv~lPC~H~~~C~~Ca~ 445 (447)
+.++++...|+||+++.+++|++||||.+.|.+|+.
T Consensus 9 e~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~ 44 (68)
T 2ea5_A 9 EPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVK 44 (68)
T ss_dssp CCSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHH
T ss_pred cccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHh
Confidence 344455568999999999999999999999999975
No 4
>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A*
Probab=98.32 E-value=1.1e-07 Score=83.30 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=49.0
Q ss_pred cccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhHHHHHHHHhh
Q 013205 328 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAAL 395 (447)
Q Consensus 328 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~~~~~p~~v~~~~~~e~~qe~~~~~~~~ 395 (447)
.|-+.=.+||+.|.+ |+++||||+||+|++|+ | .+|+.+||+||+++++...+.+
T Consensus 52 ~D~V~Cf~C~~~L~~-We~~DdP~~EH~r~~P~--------C----~Fv~~~kg~~fi~~i~~~~~~~ 106 (122)
T 3mup_A 52 NDDVKCFCCDGGLRC-WESGDDPWVEHAKWFPR--------C----EFLIRMKGQEFVDEIQGRYPHL 106 (122)
T ss_dssp TTCEEETTTCCEECC-CCTTCCHHHHHHHHCTT--------C----HHHHHHHCHHHHHHHHHHCTTH
T ss_pred CCeEEecCcCCEecC-CCCCCCHHHHHHHHCcC--------C----cchhhcCcHHHHHHHHHhchhh
Confidence 577777899999999 99999999999999999 9 8999999999999888654444
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.31 E-value=2.8e-07 Score=72.88 Aligned_cols=41 Identities=34% Similarity=0.898 Sum_probs=34.8
Q ss_pred cHHHHHHhhhhcccccccccCcceEEEecCCcccccccccCC
Q 013205 405 SRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHLT 446 (447)
Q Consensus 405 ~~~~~~~l~~e~~~C~iC~~~~~~vv~lPC~H~~~C~~Ca~~ 446 (447)
.+++.++++++. .|.||++...+.|++||||.+.|..|+.+
T Consensus 14 ~~~~~~~~~~~~-~C~iC~~~~~~~~~~pCgH~~~C~~C~~~ 54 (74)
T 4ic3_A 14 TEEQLRRLQEEK-LCKICMDRNIAIVFVPCGHLVTCKQCAEA 54 (74)
T ss_dssp HHHHHHHHHHHT-BCTTTSSSBCCEEEETTCCBCCCHHHHTT
T ss_pred HHHHHhcCccCC-CCCCCCCCCCCEEEcCCCChhHHHHhhhc
Confidence 445566777665 99999999999999999999999999865
No 6
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A
Probab=98.27 E-value=2.9e-07 Score=77.16 Aligned_cols=50 Identities=20% Similarity=0.357 Sum_probs=46.0
Q ss_pred ccccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhHHHH
Q 013205 327 AHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVW 389 (447)
Q Consensus 327 ~~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~~~~~p~~v~~~~~~e~~qe~~ 389 (447)
..|-+.=.+|+..|.+ |+++||||+||+|++|+ | .+|+.+||+||+++++
T Consensus 43 ~~D~v~Cf~C~~~l~~-We~~DdP~~eH~r~~p~--------C----~f~~~~kg~~fv~~i~ 92 (95)
T 3hl5_A 43 EGDKVKCFHCGGGLTD-WKPSEDPWEQHAKWYPG--------C----KYLLEQKGQEYINNIH 92 (95)
T ss_dssp STTCEEETTTCCEECC-CCTTCCHHHHHHHHCTT--------C----HHHHHHTCHHHHHHHT
T ss_pred CCCeEEecCCCCCccC-cCCCCCHHHHHHHHCcC--------C----cchHhhccHHHHHHHH
Confidence 4688888899999999 99999999999999999 9 8999999999998764
No 7
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.19 E-value=1.6e-07 Score=72.28 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=27.6
Q ss_pred cccccccccCcceEEEe--cCCcccccccccCC
Q 013205 416 KVLCRVCFEGDISVVLL--PCRHRILCRYDHLT 446 (447)
Q Consensus 416 ~~~C~iC~~~~~~vv~l--PC~H~~~C~~Ca~~ 446 (447)
...|+||+|+.+|.+++ ||||.+.|.+|+.+
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~ 39 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARR 39 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHH
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHH
Confidence 34799999999999888 99999999999853
No 8
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A
Probab=98.14 E-value=4.8e-07 Score=76.09 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=44.3
Q ss_pred cccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhHHHH
Q 013205 328 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVW 389 (447)
Q Consensus 328 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~~~~~p~~v~~~~~~e~~qe~~ 389 (447)
.|-+.=.+||..|.+ |+++||||+||+|++|+ | .+|+.+|+++++++++
T Consensus 46 ~D~v~Cf~C~~~l~~-We~~Ddp~~eH~r~~p~--------C----~f~~~~kg~~~v~~~~ 94 (97)
T 3d9t_A 46 NDDVKCFCCDGGLRC-WESGDDPWVEHAKWFPR--------C----EFLIRMKGQEFVDEIQ 94 (97)
T ss_dssp TTCEEETTTCCEEEC-CCTTCCHHHHHHHHCTT--------B----HHHHHHHCHHHHHHHT
T ss_pred CCEEEecCcCCEecC-CCCCCCHHHHHHHhCcc--------C----hhhHhhccHHHHHHHH
Confidence 566777789999999 99999999999999999 9 8999999999988764
No 9
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A
Probab=98.14 E-value=4.8e-07 Score=79.40 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=46.2
Q ss_pred cccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhHHHHH
Q 013205 328 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWR 390 (447)
Q Consensus 328 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~~~~~p~~v~~~~~~e~~qe~~~ 390 (447)
.|-+.=.+||..|.+ |+++||||+||+||+|+ | .+|+.+|++++++++..
T Consensus 58 ~D~V~Cf~C~~~L~~-We~~DdP~~EH~r~~P~--------C----~Fv~~~kg~~fv~~v~~ 107 (124)
T 1jd5_A 58 GDRVRCFSCGGGLMD-WNDNDEPWEQHALWLSQ--------C----RFVKLMKGQLYIDTVAA 107 (124)
T ss_dssp TTCEEETTTCCEEEC-CCTTCCHHHHHHHHCTT--------C----HHHHHHHCHHHHHHHHH
T ss_pred CCEEEecCCCCEecC-CCCCCCHHHHHHHHCcC--------C----ceeecccchHHHHHHHh
Confidence 688888899999999 99999999999999999 9 89999999999987765
No 10
>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A*
Probab=98.12 E-value=7.9e-07 Score=78.85 Aligned_cols=51 Identities=12% Similarity=0.246 Sum_probs=45.7
Q ss_pred ccccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhHHHHH
Q 013205 327 AHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWR 390 (447)
Q Consensus 327 ~~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~~~~~p~~v~~~~~~e~~qe~~~ 390 (447)
..|-+.=.+||..|.+ |+++||||+||+||+|+ | .+|+.+||+||+++++.
T Consensus 79 ~~D~V~Cf~C~~~L~~-We~~DDP~~EH~r~~P~--------C----~Fv~~~Kg~~fv~~v~~ 129 (133)
T 2i3h_A 79 HQDKVRCFFCYGGLQS-WKRGDDPWTEHAKWFPG--------C----QFLLRSKGQEYINNIHL 129 (133)
T ss_dssp STTCEEETTTCCEEEC-CCTTCCHHHHHHHHCTT--------C----HHHHHHHCHHHHHHHC-
T ss_pred CCCEEEecccCCEeCC-CCCCCCHHHHHHHHCcC--------C----ceehhcccHHHHHHHhh
Confidence 3677888889999999 99999999999999999 9 89999999999987753
No 11
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.07 E-value=6.9e-07 Score=68.90 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=27.4
Q ss_pred ccccccccCcceEEEe--cCCcccccccccCC
Q 013205 417 VLCRVCFEGDISVVLL--PCRHRILCRYDHLT 446 (447)
Q Consensus 417 ~~C~iC~~~~~~vv~l--PC~H~~~C~~Ca~~ 446 (447)
..|+||+|+.+|++++ ||||.+.|.+|+.+
T Consensus 9 ~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~ 40 (64)
T 2vje_A 9 EPCVICQGRPKNGCIVHGKTGHLMACFTCAKK 40 (64)
T ss_dssp SCCTTTSSSCSCEEEEETTEEEEEECHHHHHH
T ss_pred CCCCcCCCCCCCEEEECCCCCChhhHHHHHHH
Confidence 4799999999999999 99999999999753
No 12
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=8.5e-07 Score=70.06 Aligned_cols=39 Identities=36% Similarity=0.926 Sum_probs=32.5
Q ss_pred HHHHHHhhhhcccccccccCcceEEEecCCcccccccccC
Q 013205 406 RQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHL 445 (447)
Q Consensus 406 ~~~~~~l~~e~~~C~iC~~~~~~vv~lPC~H~~~C~~Ca~ 445 (447)
+++.++++++. .|.||++...+.|++||||.+.|.+|..
T Consensus 16 ~~~~~~~~~~~-~C~IC~~~~~~~~~~pCgH~~~C~~C~~ 54 (75)
T 2ecg_A 16 EEQLRRLQEEK-LCKICMDRNIAIVFVPCGHLVTCKQCAE 54 (75)
T ss_dssp HHHHHHHHHHH-SCSSSCSSCCCBCCSSSCCCCBCHHHHH
T ss_pred HHHHHcCCCCC-CCCcCCCCCCCEEEecCCCHHHHHHHhh
Confidence 44556666554 8999999999999999999988999964
No 13
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A
Probab=97.93 E-value=2.5e-06 Score=74.56 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=45.3
Q ss_pred ccccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhHHHHH
Q 013205 327 AHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWR 390 (447)
Q Consensus 327 ~~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~~~~~p~~v~~~~~~e~~qe~~~ 390 (447)
..|-+.=.+||..|.+ |+.+||||+||+||+|+ | .+|+.+||.++++++..
T Consensus 57 ~~D~V~Cf~C~~~L~~-We~~DdP~~eH~r~~P~--------C----~Fv~~~kg~~~v~~v~~ 107 (121)
T 1g73_C 57 EGDKVKCFHCGGGLTD-WKPSEDPWEQHAKWYPG--------C----KYLLEQKGQEYINNIHL 107 (121)
T ss_dssp STTCEEETTTCCEEES-CCTTCCHHHHHHHHCTT--------C----HHHHHHHHHHHHHHHTC
T ss_pred CCCEEEcCcCCCCcCC-CCCCCCHHHHHHHHCcC--------C----cchhhccchhhhccccc
Confidence 4677777789999999 99999999999999999 9 88999999999887653
No 14
>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens}
Probab=97.82 E-value=3e-06 Score=72.39 Aligned_cols=46 Identities=17% Similarity=0.357 Sum_probs=41.3
Q ss_pred cccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhH
Q 013205 328 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAE 386 (447)
Q Consensus 328 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~~~~~p~~v~~~~~~e~~q 386 (447)
.|-+.=.+||..|.+ |+++||||+||+||+|+ | .+|+.+||.|+++
T Consensus 54 ~D~V~Cf~C~~~L~~-We~~DdP~~eH~r~~p~--------C----~Fv~~~Kg~~~i~ 99 (106)
T 2vm5_A 54 QDTVQCFSCGGCLGN-WEEGDDPWKEHAKWFPK--------C----EFLRSKKSSEEIT 99 (106)
T ss_dssp TTCEEETTTCCEEES-CCTTCCHHHHHHHHCTT--------C----HHHHHHHCCTTSC
T ss_pred CCEEEccccCCEecC-CCCCCCHHHHHHHHCcC--------C----cchhhccCHHHHH
Confidence 677888889999999 99999999999999999 9 8888889988653
No 15
>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ...
Probab=97.64 E-value=2.4e-05 Score=69.94 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=43.3
Q ss_pred ceEEeeccccccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchh
Q 013205 319 IYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKE 383 (447)
Q Consensus 319 ~~~~~~s~~~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~~~~~p~~v~~~~~~e 383 (447)
-|+.=.....|-+.=.+||+.|.| |+.+||||+||+|++|+ | .+|+..|+.+
T Consensus 43 Fyy~g~~~~~D~V~Cf~C~~~L~~-We~~DdP~~EH~r~~p~--------C----~F~~~~k~~~ 94 (142)
T 2qfa_A 43 FIHCPTENEPDLAQCFFCFKELEG-WEPDDDPIEEHKKHSSG--------C----AFLSVKKQFE 94 (142)
T ss_dssp EEECCBTTBTTCEEETTTCCEECC-CCTTCCHHHHHHHHCTT--------C----GGGGCCSCGG
T ss_pred CCcCCCCCCCCEEEcCCCCCEecc-cCCCCCHHHHHHHHCcC--------C----cceecccccc
Confidence 344444455788888899999999 99999999999999999 9 7888888865
No 16
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B
Probab=97.13 E-value=0.00015 Score=60.52 Aligned_cols=32 Identities=6% Similarity=0.162 Sum_probs=29.9
Q ss_pred cccccccccCccccccccCCCCChHHHhhhhhc
Q 013205 328 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 360 (447)
Q Consensus 328 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~ 360 (447)
.|-+.=.+||..|.+ |+.+||||+||+|++|+
T Consensus 53 ~D~V~Cf~C~~~l~~-We~~DdP~~eH~r~~P~ 84 (94)
T 2poi_A 53 GDTVRCFSCHAAVDR-WQYGDSAVGRHRKVSPN 84 (94)
T ss_dssp TTCEEETTTCCEECC-CCTTCCHHHHHHHHCTT
T ss_pred CCEEEcccCCCEeCC-CCCCCCHHHHHHHHCcc
Confidence 577888889999999 99999999999999999
No 17
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E
Probab=97.12 E-value=0.00012 Score=63.39 Aligned_cols=44 Identities=14% Similarity=0.358 Sum_probs=37.0
Q ss_pred ccccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchh
Q 013205 327 AHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKE 383 (447)
Q Consensus 327 ~~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~~~~~p~~v~~~~~~e 383 (447)
..|-+.=.+||..|.+ |+.+||||+||+|++|+ | .+|+..+...
T Consensus 45 ~~D~V~Cf~C~~~L~~-We~~DdP~~eH~r~~p~--------C----~Fv~~~~~~n 88 (116)
T 1se0_A 45 AGDKVKCFFCGVEIGS-WEQEDQPVPEHQRWSPN--------C----PLLRRRTTNN 88 (116)
T ss_dssp STTCEEETTTCCEEES-CCTTCCHHHHHHHHCTT--------C----TTTTTCCCCC
T ss_pred CCCEEEecCcCCEecC-CCCCCCHHHHHHHHCcc--------C----cceeeeccCc
Confidence 4677778899999999 99999999999999999 9 6776655443
No 18
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Probab=97.12 E-value=0.00011 Score=60.36 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=30.0
Q ss_pred cccccccccCccccccccCCCCChHHHhhhhhc
Q 013205 328 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 360 (447)
Q Consensus 328 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~ 360 (447)
.|-+.=.+||..|.+ |+.+||||+||+|++|+
T Consensus 44 ~D~v~Cf~C~~~l~~-We~~DdP~~eH~~~~p~ 75 (85)
T 3m1d_A 44 NDKVKCFCCGLMLDN-WKLGDSPIQKHKQLYPS 75 (85)
T ss_dssp TTCEEETTTCCEECS-CCTTCCHHHHHHHHCTT
T ss_pred CCEEEeCCcCCEecC-CCCCCCHHHHHHHHCcc
Confidence 677888899999999 99999999999999999
No 19
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}
Probab=97.05 E-value=0.0002 Score=61.61 Aligned_cols=32 Identities=6% Similarity=0.162 Sum_probs=30.0
Q ss_pred cccccccccCccccccccCCCCChHHHhhhhhc
Q 013205 328 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 360 (447)
Q Consensus 328 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~ 360 (447)
.|-+.=.+||..|.+ |+.+||||+||+|++|+
T Consensus 70 ~D~V~Cf~C~~~L~~-We~~DdP~~eH~r~sP~ 101 (111)
T 2qra_D 70 GDTVRCFSCHAAVDR-WQYGDSAVGRHRKVSPN 101 (111)
T ss_dssp TTCEEETTTCCEECC-CCTTCCHHHHHHHHCTT
T ss_pred CCEEEcccCCCEeCC-CCCCCCHHHHHHHHCcc
Confidence 577888889999999 99999999999999999
No 20
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster}
Probab=96.83 E-value=0.00045 Score=61.40 Aligned_cols=43 Identities=14% Similarity=0.358 Sum_probs=36.3
Q ss_pred cccccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCc
Q 013205 326 RAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPK 381 (447)
Q Consensus 326 ~~~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~~~~~p~~v~~~~~ 381 (447)
-..|-+.=.+||..|.+ |+.+||||+||+|++|+ | .+|+..+.
T Consensus 66 G~~D~V~Cf~C~~~L~~-We~~DdP~~EH~r~sP~--------C----~Fv~~~~~ 108 (136)
T 3siq_A 66 HAGDKVKCFFCGVEIGS-WEQEDQPVPEHQRWSPN--------C----PLLRRRTT 108 (136)
T ss_dssp SSTTCEEETTTCCEEEC-CCTTCCHHHHHHHHCTT--------C----TTTTTCCC
T ss_pred CCCCeEEEeccCCEecC-CCCCCCHHHHHHHHCcC--------C----cceecccC
Confidence 35677888889999999 99999999999999999 9 66655444
No 21
>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A
Probab=96.82 E-value=0.00037 Score=62.28 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=29.9
Q ss_pred cccccccccCccccccccCCCCChHHHhhhhhc
Q 013205 328 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 360 (447)
Q Consensus 328 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~ 360 (447)
.|-+.=.+||+.|.+ |+.+||||+||+||+|+
T Consensus 76 ~D~V~Cf~C~~~L~~-We~~DdP~~EH~r~~P~ 107 (141)
T 1i4o_C 76 GDQVQCFCCGGKLKN-WEPCDRAWSEHRRHFPN 107 (141)
T ss_pred CCEEEeccCCCEecC-CCCCCCHHHHHHHHCcC
Confidence 577888889999999 99999999999999999
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.40 E-value=0.0013 Score=57.50 Aligned_cols=33 Identities=39% Similarity=0.726 Sum_probs=26.8
Q ss_pred HHhhhhcccccccccCcceEEEecCCccccccccc
Q 013205 410 ERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDH 444 (447)
Q Consensus 410 ~~l~~e~~~C~iC~~~~~~vv~lPC~H~~~C~~Ca 444 (447)
+.++++ ..|.||++.-.+.|.+||||. .|..|.
T Consensus 48 ~~~~~~-~~C~iC~~~~~~~~~~~CgH~-fc~~Ci 80 (138)
T 4ayc_A 48 DVLENE-LQCIICSEYFIEAVTLNCAHS-FCSYCI 80 (138)
T ss_dssp HHHHHH-SBCTTTCSBCSSEEEETTSCE-EEHHHH
T ss_pred Hhcccc-CCCcccCcccCCceECCCCCC-ccHHHH
Confidence 334444 489999999999999999995 588885
No 23
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.12 E-value=0.00058 Score=52.29 Aligned_cols=27 Identities=30% Similarity=0.813 Sum_probs=23.6
Q ss_pred ccccccccCcceEEEecCCcccccccccC
Q 013205 417 VLCRVCFEGDISVVLLPCRHRILCRYDHL 445 (447)
Q Consensus 417 ~~C~iC~~~~~~vv~lPC~H~~~C~~Ca~ 445 (447)
..|.||++...+ +.+||||. .|.+|..
T Consensus 16 ~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~ 42 (70)
T 2ecn_A 16 EECCICMDGRAD-LILPCAHS-FCQKCID 42 (70)
T ss_dssp CCCSSSCCSCCS-EEETTTEE-ECHHHHH
T ss_pred CCCeeCCcCccC-cccCCCCc-ccHHHHH
Confidence 489999999999 99999999 5888853
No 24
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.07 E-value=0.0037 Score=53.28 Aligned_cols=34 Identities=18% Similarity=0.475 Sum_probs=27.6
Q ss_pred HHHhhhhcccccccccCcceEEEecCCccccccccc
Q 013205 409 FERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDH 444 (447)
Q Consensus 409 ~~~l~~e~~~C~iC~~~~~~vv~lPC~H~~~C~~Ca 444 (447)
.+.++++ ..|.||++.-.+-|.+||||.. |..|-
T Consensus 46 ~~~~~~~-~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 79 (124)
T 3fl2_A 46 LSKVEET-FQCICCQELVFRPITTVCQHNV-CKDCL 79 (124)
T ss_dssp HHHHHHH-TBCTTTSSBCSSEEECTTSCEE-EHHHH
T ss_pred HHhCccC-CCCCcCChHHcCcEEeeCCCcc-cHHHH
Confidence 3555555 4899999999999999999986 77774
No 25
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.88 E-value=0.0026 Score=65.44 Aligned_cols=27 Identities=37% Similarity=0.821 Sum_probs=25.1
Q ss_pred ccccccccCcceEEEecCCccccccccc
Q 013205 417 VLCRVCFEGDISVVLLPCRHRILCRYDH 444 (447)
Q Consensus 417 ~~C~iC~~~~~~vv~lPC~H~~~C~~Ca 444 (447)
..|.||++...+.+.+||||.. |..|.
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~F-C~~Ci 359 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLM-CTSCL 359 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEE-CHHHH
T ss_pred CCCCccCcCCCCeEEeCCCChh-hHHHH
Confidence 4899999999999999999997 99985
No 26
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=95.69 E-value=0.0026 Score=56.77 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=27.4
Q ss_pred HHHhhhhcccccccccCcceEEEecCCccccccccc
Q 013205 409 FERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDH 444 (447)
Q Consensus 409 ~~~l~~e~~~C~iC~~~~~~vv~lPC~H~~~C~~Ca 444 (447)
.++++++ ..|.||++.-.+-|.+||||.. |..|.
T Consensus 72 ~~~l~~~-~~C~IC~~~~~~pv~~~CgH~f-C~~Ci 105 (150)
T 1z6u_A 72 LKKLEQS-FMCVCCQELVYQPVTTECFHNV-CKDCL 105 (150)
T ss_dssp HHHHHHH-TBCTTTSSBCSSEEECTTSCEE-EHHHH
T ss_pred HHhCccC-CEeecCChhhcCCEEcCCCCch-hHHHH
Confidence 3455554 4899999999999999999975 77774
No 27
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.68 E-value=0.0012 Score=49.60 Aligned_cols=32 Identities=31% Similarity=0.643 Sum_probs=26.4
Q ss_pred HhhhhcccccccccCcceEEEecCCccccccccc
Q 013205 411 RLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDH 444 (447)
Q Consensus 411 ~l~~e~~~C~iC~~~~~~vv~lPC~H~~~C~~Ca 444 (447)
+++++ ..|.||++.-.+.+.+||||.. |.+|.
T Consensus 16 ~~~~~-~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 47 (63)
T 2ysj_A 16 KLQEE-VICPICLDILQKPVTIDCGHNF-CLKCI 47 (63)
T ss_dssp CCCCC-CBCTTTCSBCSSCEECTTSSEE-CHHHH
T ss_pred hCccC-CCCCcCCchhCCeEEeCCCCcc-hHHHH
Confidence 34444 4899999999999999999995 88885
No 28
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.68 E-value=0.003 Score=48.63 Aligned_cols=29 Identities=28% Similarity=0.635 Sum_probs=25.0
Q ss_pred cccccccccCcceEEEecCCcccccccccC
Q 013205 416 KVLCRVCFEGDISVVLLPCRHRILCRYDHL 445 (447)
Q Consensus 416 ~~~C~iC~~~~~~vv~lPC~H~~~C~~Ca~ 445 (447)
...|.||++.-.+.+.+||||. .|.+|..
T Consensus 15 ~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~ 43 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSLPCKHV-FCYLCVK 43 (71)
T ss_dssp CCBCSSSSSBCSSEEEETTTEE-EEHHHHH
T ss_pred CCCCccCCcccCCCEEccCCCH-HHHHHHH
Confidence 3479999999999999999999 4888853
No 29
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.65 E-value=0.0011 Score=50.97 Aligned_cols=27 Identities=26% Similarity=0.591 Sum_probs=24.1
Q ss_pred ccccccccCcceEEEecCCccccccccc
Q 013205 417 VLCRVCFEGDISVVLLPCRHRILCRYDH 444 (447)
Q Consensus 417 ~~C~iC~~~~~~vv~lPC~H~~~C~~Ca 444 (447)
..|.||++.-.+.+.+||||.. |.+|.
T Consensus 21 ~~C~IC~~~~~~~~~~~CgH~f-C~~Ci 47 (73)
T 2ysl_A 21 VICPICLDILQKPVTIDCGHNF-CLKCI 47 (73)
T ss_dssp CBCTTTCSBCSSEEECTTCCEE-EHHHH
T ss_pred CEeccCCcccCCeEEcCCCChh-hHHHH
Confidence 4899999999999999999995 88875
No 30
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.62 E-value=0.00075 Score=49.44 Aligned_cols=27 Identities=30% Similarity=0.630 Sum_probs=24.2
Q ss_pred ccccccccCcceEEEecCCccccccccc
Q 013205 417 VLCRVCFEGDISVVLLPCRHRILCRYDH 444 (447)
Q Consensus 417 ~~C~iC~~~~~~vv~lPC~H~~~C~~Ca 444 (447)
..|.||++.-.+.+.+||||.. |.+|.
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 42 (58)
T 2ecj_A 16 ASCSVCLEYLKEPVIIECGHNF-CKACI 42 (58)
T ss_dssp CBCSSSCCBCSSCCCCSSCCCC-CHHHH
T ss_pred CCCccCCcccCccEeCCCCCcc-CHHHH
Confidence 4899999999999999999985 88884
No 31
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.43 E-value=0.0025 Score=47.24 Aligned_cols=30 Identities=27% Similarity=0.497 Sum_probs=25.5
Q ss_pred hcccccccccCcceEEEecCCcccccccccC
Q 013205 415 EKVLCRVCFEGDISVVLLPCRHRILCRYDHL 445 (447)
Q Consensus 415 e~~~C~iC~~~~~~vv~lPC~H~~~C~~Ca~ 445 (447)
+...|.||++.-.+-+.+||||.. |..|..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~ 34 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTL-CSGCLE 34 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCS-BTTTCS
T ss_pred cCCCceEeCCccCCeEEcCCCCcc-cHHHHc
Confidence 345799999999999999999975 888864
No 32
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=95.23 E-value=0.0049 Score=46.63 Aligned_cols=28 Identities=29% Similarity=0.663 Sum_probs=24.0
Q ss_pred cccccccccCcce-EEEecCCccccccccc
Q 013205 416 KVLCRVCFEGDIS-VVLLPCRHRILCRYDH 444 (447)
Q Consensus 416 ~~~C~iC~~~~~~-vv~lPC~H~~~C~~Ca 444 (447)
...|.||++.-.+ ++.+||||. .|.+|.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci 33 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHA-FCYVCI 33 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEE-ESTTHH
T ss_pred CCCCeeCCccccCCcEecCCCCe-eHHHHH
Confidence 3479999999888 799999999 588885
No 33
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=94.91 E-value=0.0035 Score=48.73 Aligned_cols=32 Identities=25% Similarity=0.611 Sum_probs=25.9
Q ss_pred HhhhhcccccccccCcceEEEec-CCccccccccc
Q 013205 411 RLQNEKVLCRVCFEGDISVVLLP-CRHRILCRYDH 444 (447)
Q Consensus 411 ~l~~e~~~C~iC~~~~~~vv~lP-C~H~~~C~~Ca 444 (447)
.++++ ..|.||++.-.+-|.+| |||.. |..|-
T Consensus 11 ~~~~~-~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci 43 (74)
T 2yur_A 11 PIPDE-LLCLICKDIMTDAVVIPCCGNSY-CDECI 43 (74)
T ss_dssp CSCGG-GSCSSSCCCCTTCEECSSSCCEE-CTTHH
T ss_pred cCCCC-CCCcCCChHHhCCeEcCCCCCHH-HHHHH
Confidence 34444 48999999999999999 99975 88774
No 34
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.88 E-value=0.003 Score=48.74 Aligned_cols=32 Identities=25% Similarity=0.525 Sum_probs=25.3
Q ss_pred HhhhhcccccccccCcceEEEe-cCCccccccccc
Q 013205 411 RLQNEKVLCRVCFEGDISVVLL-PCRHRILCRYDH 444 (447)
Q Consensus 411 ~l~~e~~~C~iC~~~~~~vv~l-PC~H~~~C~~Ca 444 (447)
+++++ ..|.||++.-.+.+.+ ||||.. |.+|.
T Consensus 11 ~~~~~-~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci 43 (72)
T 2djb_A 11 ELTPY-ILCSICKGYLIDATTITECLHTF-CKSCI 43 (72)
T ss_dssp CCCGG-GSCTTTSSCCSSCEECSSSCCEE-CHHHH
T ss_pred hcCCC-CCCCCCChHHHCcCEECCCCCHH-HHHHH
Confidence 34444 4899999999988887 999986 87774
No 35
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.82 E-value=0.0067 Score=50.20 Aligned_cols=33 Identities=24% Similarity=0.524 Sum_probs=26.5
Q ss_pred HHhhhhcccccccccCcceEEEecCCccccccccc
Q 013205 410 ERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDH 444 (447)
Q Consensus 410 ~~l~~e~~~C~iC~~~~~~vv~lPC~H~~~C~~Ca 444 (447)
+.++++ ..|.||++.-.+.+.+||||.. |..|.
T Consensus 16 ~~~~~~-~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 48 (112)
T 1jm7_A 16 NAMQKI-LECPICLELIKEPVSTKCDHIF-CKFCM 48 (112)
T ss_dssp HHHHHH-TSCSSSCCCCSSCCBCTTSCCC-CSHHH
T ss_pred HhccCC-CCCcccChhhcCeEECCCCCHH-HHHHH
Confidence 344444 4899999999999999999976 88874
No 36
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.74 E-value=0.0034 Score=49.44 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=24.6
Q ss_pred cccccccccCcceEEEecCCccccccccc
Q 013205 416 KVLCRVCFEGDISVVLLPCRHRILCRYDH 444 (447)
Q Consensus 416 ~~~C~iC~~~~~~vv~lPC~H~~~C~~Ca 444 (447)
...|.||++.-.+.+.+||||.. |..|.
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 42 (81)
T 2csy_A 15 PFRCFICRQAFQNPVVTKCRHYF-CESCA 42 (81)
T ss_dssp CSBCSSSCSBCCSEEECTTSCEE-EHHHH
T ss_pred CCCCcCCCchhcCeeEccCCCHh-HHHHH
Confidence 45899999999999999999986 88775
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=94.65 E-value=0.013 Score=47.77 Aligned_cols=35 Identities=20% Similarity=0.533 Sum_probs=27.1
Q ss_pred HHHHhhhhcccccccccCcceEEEe-cCCccccccccc
Q 013205 408 EFERLQNEKVLCRVCFEGDISVVLL-PCRHRILCRYDH 444 (447)
Q Consensus 408 ~~~~l~~e~~~C~iC~~~~~~vv~l-PC~H~~~C~~Ca 444 (447)
..+.++++ ..|.||++.-.+-+.+ ||||.. |..|-
T Consensus 15 ~~~~~~~~-~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci 50 (99)
T 2y43_A 15 VMKTIDDL-LRCGICFEYFNIAMIIPQCSHNY-CSLCI 50 (99)
T ss_dssp GGHHHHHH-TBCTTTCSBCSSEEECTTTCCEE-EHHHH
T ss_pred HHHhCCCC-CCcccCChhhCCcCEECCCCCHh-hHHHH
Confidence 34555555 4899999999999888 999976 77764
No 38
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.61 E-value=0.0071 Score=47.18 Aligned_cols=27 Identities=30% Similarity=0.597 Sum_probs=24.0
Q ss_pred ccccccccCcceEEEecCCccccccccc
Q 013205 417 VLCRVCFEGDISVVLLPCRHRILCRYDH 444 (447)
Q Consensus 417 ~~C~iC~~~~~~vv~lPC~H~~~C~~Ca 444 (447)
..|.||++.-.+.+.+||||.. |.+|.
T Consensus 20 ~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 46 (85)
T 2ecv_A 20 VTCPICLELLTQPLSLDCGHSF-CQACL 46 (85)
T ss_dssp CCCTTTCSCCSSCBCCSSSCCB-CTTHH
T ss_pred CCCCCCCcccCCceeCCCCCHH-HHHHH
Confidence 4899999999999999999975 88885
No 39
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.50 E-value=0.01 Score=46.28 Aligned_cols=27 Identities=33% Similarity=0.586 Sum_probs=23.9
Q ss_pred ccccccccCcceEEEecCCccccccccc
Q 013205 417 VLCRVCFEGDISVVLLPCRHRILCRYDH 444 (447)
Q Consensus 417 ~~C~iC~~~~~~vv~lPC~H~~~C~~Ca 444 (447)
..|.||++.-.+-+.+||||.. |.+|.
T Consensus 20 ~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 46 (85)
T 2ecw_A 20 VTCPICLELLKEPVSADCNHSF-CRACI 46 (85)
T ss_dssp TSCTTTCSCCSSCEECTTSCCB-CHHHH
T ss_pred CCCcCCChhhCcceeCCCCCHH-HHHHH
Confidence 4899999999999999999975 88885
No 40
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.38 E-value=0.011 Score=46.62 Aligned_cols=27 Identities=37% Similarity=0.716 Sum_probs=23.5
Q ss_pred ccccccccCcce----EEEecCCccccccccc
Q 013205 417 VLCRVCFEGDIS----VVLLPCRHRILCRYDH 444 (447)
Q Consensus 417 ~~C~iC~~~~~~----vv~lPC~H~~~C~~Ca 444 (447)
..|.||++.-.+ .+.+||||.. |.+|.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci 46 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTI-CRQCL 46 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEE-EHHHH
T ss_pred CCCccCCccccccCCCeEECCCCChh-hHHHH
Confidence 489999999888 9999999976 88875
No 41
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=94.10 E-value=0.018 Score=47.46 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=28.8
Q ss_pred HHHHHhhhhcccccccccCcceEEE-ecCCccccccccc
Q 013205 407 QEFERLQNEKVLCRVCFEGDISVVL-LPCRHRILCRYDH 444 (447)
Q Consensus 407 ~~~~~l~~e~~~C~iC~~~~~~vv~-lPC~H~~~C~~Ca 444 (447)
...+.++++. .|.||++.-.+-|. +||||.. |..|-
T Consensus 14 ~~~~~l~~~~-~C~IC~~~~~~p~~~~~CgH~F-C~~Ci 50 (100)
T 3lrq_A 14 QSVESIAEVF-RCFICMEKLRDARLCPHCSKLC-CFSCI 50 (100)
T ss_dssp HHHHHHHHHT-BCTTTCSBCSSEEECTTTCCEE-EHHHH
T ss_pred cccccCCCCC-CCccCCccccCccccCCCCChh-hHHHH
Confidence 3446666664 89999999999999 9999986 76663
No 42
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=94.05 E-value=0.0075 Score=46.75 Aligned_cols=28 Identities=32% Similarity=0.616 Sum_probs=24.6
Q ss_pred ccccccccCcceEEEecCCcccccccccC
Q 013205 417 VLCRVCFEGDISVVLLPCRHRILCRYDHL 445 (447)
Q Consensus 417 ~~C~iC~~~~~~vv~lPC~H~~~C~~Ca~ 445 (447)
..|.||++.-.+.+.+||||.. |.+|..
T Consensus 13 ~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~ 40 (79)
T 2egp_A 13 VTCPICLELLTEPLSLDCGHSL-CRACIT 40 (79)
T ss_dssp CEETTTTEECSSCCCCSSSCCC-CHHHHS
T ss_pred CCCcCCCcccCCeeECCCCCHH-HHHHHH
Confidence 4899999999998999999975 888865
No 43
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=94.02 E-value=0.018 Score=41.44 Aligned_cols=27 Identities=30% Similarity=0.565 Sum_probs=21.9
Q ss_pred ccccccccCcce----EEEecCCccccccccc
Q 013205 417 VLCRVCFEGDIS----VVLLPCRHRILCRYDH 444 (447)
Q Consensus 417 ~~C~iC~~~~~~----vv~lPC~H~~~C~~Ca 444 (447)
..|.||++.-.+ ++.+||||.. |.+|.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci 36 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLL-HRTCY 36 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEE-ETTHH
T ss_pred CcCcccChhhcCCCcCeEecCCCCcc-cHHHH
Confidence 479999997645 9999999964 88775
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=93.96 E-value=0.016 Score=48.09 Aligned_cols=33 Identities=21% Similarity=0.465 Sum_probs=26.6
Q ss_pred HHhhhhcccccccccCcceEEEe-cCCccccccccc
Q 013205 410 ERLQNEKVLCRVCFEGDISVVLL-PCRHRILCRYDH 444 (447)
Q Consensus 410 ~~l~~e~~~C~iC~~~~~~vv~l-PC~H~~~C~~Ca 444 (447)
+.++++ ..|.||++.-.+-+.+ ||||.. |..|-
T Consensus 10 ~~~~~~-~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci 43 (108)
T 2ckl_A 10 TELNPH-LMCVLCGGYFIDATTIIECLHSF-CKTCI 43 (108)
T ss_dssp HHHGGG-TBCTTTSSBCSSEEEETTTCCEE-EHHHH
T ss_pred hccCCc-CCCccCChHHhCcCEeCCCCChh-hHHHH
Confidence 455555 4899999999999998 999976 77774
No 45
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=93.82 E-value=0.0092 Score=45.30 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=21.2
Q ss_pred cccccccc---CcceEEEecCCccccccccc
Q 013205 417 VLCRVCFE---GDISVVLLPCRHRILCRYDH 444 (447)
Q Consensus 417 ~~C~iC~~---~~~~vv~lPC~H~~~C~~Ca 444 (447)
..|.||++ ...+++.+||||.. |..|.
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci 44 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLF-HQVCV 44 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEE-EHHHH
T ss_pred CCCeeCCccccCCCcEEEeCCCCHH-HHHHH
Confidence 47999965 44678999999985 77774
No 46
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.80 E-value=0.021 Score=48.13 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=29.7
Q ss_pred HHHHHhhhhcccccccccCcceEEEe-cCCcccccccccC
Q 013205 407 QEFERLQNEKVLCRVCFEGDISVVLL-PCRHRILCRYDHL 445 (447)
Q Consensus 407 ~~~~~l~~e~~~C~iC~~~~~~vv~l-PC~H~~~C~~Ca~ 445 (447)
+..+.++++ ..|.||++.-.+-|.+ ||||.. |..|..
T Consensus 14 ~~~~~l~~~-~~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~ 51 (117)
T 1jm7_B 14 AALDRLEKL-LRCSRCTNILREPVCLGGCEHIF-CSNCVS 51 (117)
T ss_dssp HHHHHHHHT-TSCSSSCSCCSSCBCCCSSSCCB-CTTTGG
T ss_pred HHHHhchhC-CCCCCCChHhhCccEeCCCCCHH-HHHHHH
Confidence 344566655 4899999999999999 999987 888854
No 47
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.36 E-value=0.014 Score=43.82 Aligned_cols=28 Identities=29% Similarity=0.663 Sum_probs=22.3
Q ss_pred cccccccccCcceE-------EEecCCccccccccc
Q 013205 416 KVLCRVCFEGDISV-------VLLPCRHRILCRYDH 444 (447)
Q Consensus 416 ~~~C~iC~~~~~~v-------v~lPC~H~~~C~~Ca 444 (447)
...|.||++.-.+. +.+||||.. |.+|.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci 49 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCL 49 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHH
T ss_pred CCCCcccCccccccccccCCeEeCCCCChh-cHHHH
Confidence 34899999986664 999999964 77775
No 48
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=92.96 E-value=0.019 Score=44.62 Aligned_cols=28 Identities=36% Similarity=0.541 Sum_probs=21.4
Q ss_pred ccccccccC---cceEEEecCCcccccccccC
Q 013205 417 VLCRVCFEG---DISVVLLPCRHRILCRYDHL 445 (447)
Q Consensus 417 ~~C~iC~~~---~~~vv~lPC~H~~~C~~Ca~ 445 (447)
..|.||++. +..++.+||||.. |.+|..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~ 46 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLF-HDSCIV 46 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEE-ETTTTH
T ss_pred CCCeeCCccccCCCCEEEeCCCCee-cHHHHH
Confidence 489999554 4667888999974 888853
No 49
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.88 E-value=0.013 Score=44.17 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.2
Q ss_pred cccccccccCcceEEEecCCccccccccc
Q 013205 416 KVLCRVCFEGDISVVLLPCRHRILCRYDH 444 (447)
Q Consensus 416 ~~~C~iC~~~~~~vv~lPC~H~~~C~~Ca 444 (447)
...|.||++.-.+-+.+||||.. |.+|.
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 42 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQTECGHRF-CESCM 42 (66)
T ss_dssp CEECTTTCCEESSCCCCSSSCCC-CHHHH
T ss_pred CCCCCCCChHhcCeeECCCCCHH-HHHHH
Confidence 34899999999999999999986 88874
No 50
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=92.79 E-value=0.02 Score=42.31 Aligned_cols=27 Identities=30% Similarity=0.687 Sum_probs=21.7
Q ss_pred ccccccccCcce-------EEEecCCccccccccc
Q 013205 417 VLCRVCFEGDIS-------VVLLPCRHRILCRYDH 444 (447)
Q Consensus 417 ~~C~iC~~~~~~-------vv~lPC~H~~~C~~Ca 444 (447)
..|.||++.-.+ ++.+||||.. |.+|.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci 37 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCL 37 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHH
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCch-hHHHH
Confidence 479999997655 4899999985 77774
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=92.76 E-value=0.027 Score=47.09 Aligned_cols=28 Identities=32% Similarity=0.738 Sum_probs=24.5
Q ss_pred ccccccccCcceEEEecCCcccccccccC
Q 013205 417 VLCRVCFEGDISVVLLPCRHRILCRYDHL 445 (447)
Q Consensus 417 ~~C~iC~~~~~~vv~lPC~H~~~C~~Ca~ 445 (447)
..|.||++.-.+-|.+||||.. |..|..
T Consensus 16 ~~C~iC~~~~~~p~~~~CgH~f-C~~Ci~ 43 (115)
T 3l11_A 16 CQCGICMEILVEPVTLPCNHTL-CKPCFQ 43 (115)
T ss_dssp HBCTTTCSBCSSCEECTTSCEE-CHHHHC
T ss_pred CCCccCCcccCceeEcCCCCHH-hHHHHH
Confidence 4799999999999999999986 888854
No 52
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=92.74 E-value=0.02 Score=43.40 Aligned_cols=27 Identities=30% Similarity=0.687 Sum_probs=21.9
Q ss_pred ccccccccCcceE-------EEecCCccccccccc
Q 013205 417 VLCRVCFEGDISV-------VLLPCRHRILCRYDH 444 (447)
Q Consensus 417 ~~C~iC~~~~~~v-------v~lPC~H~~~C~~Ca 444 (447)
..|.||++.-.+- +.+||||.. |.+|.
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci 44 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCL 44 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHH
T ss_pred CCCcccChhhhccccccCCeEeCCCCChH-hHHHH
Confidence 4799999986654 999999975 77774
No 53
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.61 E-value=0.014 Score=44.79 Aligned_cols=27 Identities=33% Similarity=0.666 Sum_probs=20.8
Q ss_pred ccccccccC---cceEEEecCCccccccccc
Q 013205 417 VLCRVCFEG---DISVVLLPCRHRILCRYDH 444 (447)
Q Consensus 417 ~~C~iC~~~---~~~vv~lPC~H~~~C~~Ca 444 (447)
..|.||++. +..++.+||||.. |.+|.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci 45 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAF-HRKCL 45 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEE-EHHHH
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEe-cHHHH
Confidence 379999987 3557778999984 77664
No 54
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=92.41 E-value=0.04 Score=39.67 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=21.7
Q ss_pred ccccccccCcce---EEEec-CCccccccccc
Q 013205 417 VLCRVCFEGDIS---VVLLP-CRHRILCRYDH 444 (447)
Q Consensus 417 ~~C~iC~~~~~~---vv~lP-C~H~~~C~~Ca 444 (447)
..|.||++.-.+ ++.+| |||.. |.+|.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci 36 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGF-HAECV 36 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEE-CTTHH
T ss_pred CcCccCCccccCCCceEECCCCCCcc-cHHHH
Confidence 479999988666 78888 99974 77774
No 55
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.37 E-value=0.023 Score=42.72 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=19.8
Q ss_pred cccccccc-Ccc----eEEEecCCccccccccc
Q 013205 417 VLCRVCFE-GDI----SVVLLPCRHRILCRYDH 444 (447)
Q Consensus 417 ~~C~iC~~-~~~----~vv~lPC~H~~~C~~Ca 444 (447)
..|.||++ .-. -++.+||||.. |.+|.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci 35 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCV 35 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHH
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHh-HHHHH
Confidence 47999999 222 23678999986 88774
No 56
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.24 E-value=0.047 Score=42.11 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=21.4
Q ss_pred cccccccccC---cceEEEecCCccccccccc
Q 013205 416 KVLCRVCFEG---DISVVLLPCRHRILCRYDH 444 (447)
Q Consensus 416 ~~~C~iC~~~---~~~vv~lPC~H~~~C~~Ca 444 (447)
...|.||++. +..++.+||||.. |.+|.
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci 53 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEF-HAKCV 53 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEE-ETTHH
T ss_pred CCCCeECCcccCCCCeEEEECCCCHh-HHHHH
Confidence 3479999955 4457889999984 77774
No 57
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=91.76 E-value=0.035 Score=44.38 Aligned_cols=27 Identities=26% Similarity=0.631 Sum_probs=23.5
Q ss_pred ccccccccCcceEEEec-CCccccccccc
Q 013205 417 VLCRVCFEGDISVVLLP-CRHRILCRYDH 444 (447)
Q Consensus 417 ~~C~iC~~~~~~vv~lP-C~H~~~C~~Ca 444 (447)
..|.||++.-.+-|.+| |||.. |..|-
T Consensus 14 ~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci 41 (92)
T 3ztg_A 14 LLCLICKDIMTDAVVIPCCGNSY-CDECI 41 (92)
T ss_dssp TEETTTTEECSSCEECTTTCCEE-CHHHH
T ss_pred CCCCCCChhhcCceECCCCCCHH-HHHHH
Confidence 48999999999999999 99986 77764
No 58
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=91.67 E-value=0.055 Score=48.15 Aligned_cols=33 Identities=24% Similarity=0.585 Sum_probs=25.4
Q ss_pred HHhhhhcccccccccCcceEEEe-cCCccccccccc
Q 013205 410 ERLQNEKVLCRVCFEGDISVVLL-PCRHRILCRYDH 444 (447)
Q Consensus 410 ~~l~~e~~~C~iC~~~~~~vv~l-PC~H~~~C~~Ca 444 (447)
+.+.++ ..|.||++.-.+.|.+ ||||.. |..|-
T Consensus 49 ~~~~~~-~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci 82 (165)
T 2ckl_B 49 RSLHSE-LMCPICLDMLKNTMTTKECLHRF-CADCI 82 (165)
T ss_dssp -CCHHH-HBCTTTSSBCSSEEEETTTCCEE-EHHHH
T ss_pred hhCCCC-CCCcccChHhhCcCEeCCCCChh-HHHHH
Confidence 334444 4899999999999888 999976 77774
No 59
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=91.34 E-value=0.071 Score=44.58 Aligned_cols=32 Identities=22% Similarity=0.474 Sum_probs=25.9
Q ss_pred HhhhhcccccccccCcceEEEecCCccccccccc
Q 013205 411 RLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDH 444 (447)
Q Consensus 411 ~l~~e~~~C~iC~~~~~~vv~lPC~H~~~C~~Ca 444 (447)
+++++ ..|.||++.-.+-+.+||||.. |..|-
T Consensus 19 ~~~~~-~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 50 (116)
T 1rmd_A 19 HFVKS-ISCQICEHILADPVETSCKHLF-CRICI 50 (116)
T ss_dssp HHHHH-TBCTTTCSBCSSEEECTTSCEE-EHHHH
T ss_pred hccCC-CCCCCCCcHhcCcEEcCCCCcc-cHHHH
Confidence 34444 4899999999999999999986 77774
No 60
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=90.74 E-value=0.058 Score=43.53 Aligned_cols=27 Identities=22% Similarity=0.539 Sum_probs=20.9
Q ss_pred ccccccccCcce---EEEecCCccccccccc
Q 013205 417 VLCRVCFEGDIS---VVLLPCRHRILCRYDH 444 (447)
Q Consensus 417 ~~C~iC~~~~~~---vv~lPC~H~~~C~~Ca 444 (447)
..|.||++.-.+ ++.+||||.. |..|.
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci 70 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYF-HKPCV 70 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEE-EHHHH
T ss_pred CCCcccChhhcCCCcEEecCCCChH-HHHHH
Confidence 479999876554 8899999964 77664
No 61
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=90.57 E-value=0.02 Score=45.69 Aligned_cols=27 Identities=33% Similarity=0.795 Sum_probs=21.0
Q ss_pred ccccccccCc--ceEEEec--CCccccccccc
Q 013205 417 VLCRVCFEGD--ISVVLLP--CRHRILCRYDH 444 (447)
Q Consensus 417 ~~C~iC~~~~--~~vv~lP--C~H~~~C~~Ca 444 (447)
..|.||+|.- .+.++.| |||.. |..|-
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl 42 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQI-CRFCW 42 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHH
T ss_pred CcCCccCccCccccccccccCCCCCc-CHHHH
Confidence 4899999965 4567777 99975 87774
No 62
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=90.39 E-value=0.086 Score=40.76 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=23.8
Q ss_pred cccccccccCcceEEEecCCccccccccc
Q 013205 416 KVLCRVCFEGDISVVLLPCRHRILCRYDH 444 (447)
Q Consensus 416 ~~~C~iC~~~~~~vv~lPC~H~~~C~~Ca 444 (447)
...|.||++--.+-|.+||||.. |..|-
T Consensus 8 ~~~C~IC~~~~~~Pv~~~CgH~f-c~~Ci 35 (78)
T 1t1h_A 8 YFRCPISLELMKDPVIVSTGQTY-ERSSI 35 (78)
T ss_dssp SSSCTTTSCCCSSEEEETTTEEE-EHHHH
T ss_pred cCCCCCccccccCCEEcCCCCee-cHHHH
Confidence 34899999999999999999986 77663
No 63
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=89.90 E-value=0.097 Score=44.07 Aligned_cols=27 Identities=30% Similarity=0.650 Sum_probs=23.7
Q ss_pred ccccccccCcceEEEecCCccccccccc
Q 013205 417 VLCRVCFEGDISVVLLPCRHRILCRYDH 444 (447)
Q Consensus 417 ~~C~iC~~~~~~vv~lPC~H~~~C~~Ca 444 (447)
..|.||++.-.+-|.+||||.. |..|.
T Consensus 19 ~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 45 (118)
T 3hct_A 19 YECPICLMALREAVQTPCGHRF-CKACI 45 (118)
T ss_dssp GBCTTTCSBCSSEEECTTSCEE-EHHHH
T ss_pred CCCCcCChhhcCeEECCcCChh-hHHHH
Confidence 4899999999999999999986 77774
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.49 E-value=0.13 Score=41.62 Aligned_cols=28 Identities=14% Similarity=0.377 Sum_probs=19.8
Q ss_pred cccccccccCcce--EEE-ecCCccccccccc
Q 013205 416 KVLCRVCFEGDIS--VVL-LPCRHRILCRYDH 444 (447)
Q Consensus 416 ~~~C~iC~~~~~~--vv~-lPC~H~~~C~~Ca 444 (447)
...|.||++.-.+ ++- .||||.. |.+|-
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl 35 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCL 35 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEE-EHHHH
T ss_pred CcCCcccCcccccccceEcCCCCCcc-cHHHH
Confidence 3479999987433 333 4899986 88874
No 65
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=85.14 E-value=0.28 Score=43.01 Aligned_cols=32 Identities=25% Similarity=0.522 Sum_probs=25.6
Q ss_pred HhhhhcccccccccCcceEEEecCCccccccccc
Q 013205 411 RLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDH 444 (447)
Q Consensus 411 ~l~~e~~~C~iC~~~~~~vv~lPC~H~~~C~~Ca 444 (447)
+++++ ..|.||++--.+-|..||||.. |..|-
T Consensus 27 ~l~~~-~~C~IC~~~~~~pv~~~CgH~F-C~~Ci 58 (141)
T 3knv_A 27 KLEAK-YLCSACRNVLRRPFQAQCGHRY-CSFCL 58 (141)
T ss_dssp GCCGG-GBCTTTCSBCSSEEECTTSCEE-EHHHH
T ss_pred cCCcC-cCCCCCChhhcCcEECCCCCcc-CHHHH
Confidence 34433 5899999998888999999986 87774
No 66
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=79.25 E-value=0.48 Score=39.10 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=19.8
Q ss_pred cccccccCc------------------ceEEEecCCccccccccc
Q 013205 418 LCRVCFEGD------------------ISVVLLPCRHRILCRYDH 444 (447)
Q Consensus 418 ~C~iC~~~~------------------~~vv~lPC~H~~~C~~Ca 444 (447)
.|.||++.- ..++++||||.. |.+|-
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci 70 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCL 70 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHH
T ss_pred cCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHH
Confidence 699998874 345589999975 77773
No 67
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=74.71 E-value=0.63 Score=38.76 Aligned_cols=28 Identities=29% Similarity=0.663 Sum_probs=21.8
Q ss_pred cccccccccCcceE-------EEecCCccccccccc
Q 013205 416 KVLCRVCFEGDISV-------VLLPCRHRILCRYDH 444 (447)
Q Consensus 416 ~~~C~iC~~~~~~v-------v~lPC~H~~~C~~Ca 444 (447)
...|.||++.-.+. +.+||||.. |..|-
T Consensus 72 ~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci 106 (133)
T 4ap4_A 72 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCL 106 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHH
T ss_pred CCCCCCCCCccccccccCcceEeCCCCChh-hHHHH
Confidence 45799999876553 899999986 77664
No 68
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=74.27 E-value=0.49 Score=37.76 Aligned_cols=30 Identities=17% Similarity=-0.074 Sum_probs=24.5
Q ss_pred hhhhcccccccccCcceEEEecCCcccccccc
Q 013205 412 LQNEKVLCRVCFEGDISVVLLPCRHRILCRYD 443 (447)
Q Consensus 412 l~~e~~~C~iC~~~~~~vv~lPC~H~~~C~~C 443 (447)
+.++ ..|-||++-=.|=|.+||||.. |..|
T Consensus 11 ~p~~-~~CpI~~~~m~dPV~~~cGhtf-~r~~ 40 (85)
T 2kr4_A 11 APDE-FRDPLMDTLMTDPVRLPSGTVM-DRSI 40 (85)
T ss_dssp CCTT-TBCTTTCSBCSSEEECTTSCEE-EHHH
T ss_pred Cchh-eECcccCchhcCCeECCCCCEE-CHHH
Confidence 3434 4899999999999999999975 6665
No 69
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=72.07 E-value=0.6 Score=38.57 Aligned_cols=26 Identities=15% Similarity=-0.147 Sum_probs=23.0
Q ss_pred ccccccccCcceEEEecCCcccccccc
Q 013205 417 VLCRVCFEGDISVVLLPCRHRILCRYD 443 (447)
Q Consensus 417 ~~C~iC~~~~~~vv~lPC~H~~~C~~C 443 (447)
..|-||++-=.|=|.+||||.. |..|
T Consensus 30 ~~CpI~~~~m~dPV~~~cGhtf-~r~~ 55 (100)
T 2kre_A 30 FRDPLMDTLMTDPVRLPSGTIM-DRSI 55 (100)
T ss_dssp TBCTTTCSBCSSEEEETTTEEE-EHHH
T ss_pred hCCcCccCcccCCeECCCCCEE-chHH
Confidence 4899999999999999999974 7666
No 70
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=70.31 E-value=1.5 Score=41.05 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=23.7
Q ss_pred cccccccccCcceEEEecCCcccccccc
Q 013205 416 KVLCRVCFEGDISVVLLPCRHRILCRYD 443 (447)
Q Consensus 416 ~~~C~iC~~~~~~vv~lPC~H~~~C~~C 443 (447)
...|.||++--.|=|.+||||.. |..|
T Consensus 208 ~~~c~i~~~~~~dPv~~~~gh~f-~~~~ 234 (281)
T 2c2l_A 208 YLCGKISFELMREPCITPSGITY-DRKD 234 (281)
T ss_dssp TTBCTTTCSBCSSEEECSSCCEE-ETTH
T ss_pred ccCCcCcCCHhcCCeECCCCCEE-CHHH
Confidence 35799999999999999999976 7776
No 71
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.27 E-value=1.3 Score=34.70 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=15.8
Q ss_pred cccccccCcce--------------E-EEecCCcccccccc
Q 013205 418 LCRVCFEGDIS--------------V-VLLPCRHRILCRYD 443 (447)
Q Consensus 418 ~C~iC~~~~~~--------------v-v~lPC~H~~~C~~C 443 (447)
.|.||++.-.+ + ++.+|||.. +.+|
T Consensus 17 ~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~F-H~~C 56 (81)
T 2ecl_A 17 TCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF-HNCC 56 (81)
T ss_dssp CBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEE-EHHH
T ss_pred CCcccChhhhccCcccccccCCCceEEEeCCCCCcc-ChHH
Confidence 57777775533 4 444599985 5555
No 72
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.05 E-value=2.6 Score=34.01 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=22.8
Q ss_pred cccccccccCcceEEEec-CCcccccccc
Q 013205 416 KVLCRVCFEGDISVVLLP-CRHRILCRYD 443 (447)
Q Consensus 416 ~~~C~iC~~~~~~vv~lP-C~H~~~C~~C 443 (447)
...|-||++-=.|=|.+| |||.. |..|
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~f-~r~c 34 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHTY-EEDA 34 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCEE-EHHH
T ss_pred EeECcCcCchhcCCEEcCCCCCee-cHHH
Confidence 358999999999999997 99975 6655
No 73
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=62.73 E-value=2.5 Score=34.63 Aligned_cols=26 Identities=19% Similarity=0.088 Sum_probs=22.5
Q ss_pred ccccccccCcceEEEecCC-cccccccc
Q 013205 417 VLCRVCFEGDISVVLLPCR-HRILCRYD 443 (447)
Q Consensus 417 ~~C~iC~~~~~~vv~lPC~-H~~~C~~C 443 (447)
..|-||++-=.|=|.+||| |.. |..|
T Consensus 23 ~~CpI~~~~m~dPV~~~cG~htf-~r~c 49 (98)
T 1wgm_A 23 FLDPIMSTLMCDPVVLPSSRVTV-DRST 49 (98)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEE-EHHH
T ss_pred cCCcCccccccCCeECCCCCeEE-CHHH
Confidence 4899999999999999999 865 6655
No 74
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=55.01 E-value=4.6 Score=33.69 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=17.8
Q ss_pred cccccccCcc------------------eEEEecCCcccccccc
Q 013205 418 LCRVCFEGDI------------------SVVLLPCRHRILCRYD 443 (447)
Q Consensus 418 ~C~iC~~~~~------------------~vv~lPC~H~~~C~~C 443 (447)
.|-||++.-. .++.+||+|.. +..|
T Consensus 39 ~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~F-H~~C 81 (106)
T 3dpl_R 39 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHC 81 (106)
T ss_dssp CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEE-EHHH
T ss_pred CCccCChhHhCcCchhhccccccCCccceEeecccCcEE-CHHH
Confidence 6888877622 37889999974 4444
No 75
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.52 E-value=5.9 Score=31.30 Aligned_cols=22 Identities=32% Similarity=0.810 Sum_probs=15.8
Q ss_pred ccccccccCc--ceEEEecCC-----ccc
Q 013205 417 VLCRVCFEGD--ISVVLLPCR-----HRI 438 (447)
Q Consensus 417 ~~C~iC~~~~--~~vv~lPC~-----H~~ 438 (447)
..|.||++.. -+.+.+||+ |.+
T Consensus 16 ~~C~IC~~~~~~~~~l~~pC~C~Gs~h~f 44 (80)
T 2d8s_A 16 DICRICHCEGDDESPLITPCHCTGSLHFV 44 (80)
T ss_dssp CCCSSSCCCCCSSSCEECSSSCCSSSCCE
T ss_pred CCCeEcCccccCCCeeEeccccCCcCCee
Confidence 3799999642 345679996 875
No 76
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=48.31 E-value=3.9 Score=32.95 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=20.9
Q ss_pred ccccccccC-cceEEE--ecCCccccccccc
Q 013205 417 VLCRVCFEG-DISVVL--LPCRHRILCRYDH 444 (447)
Q Consensus 417 ~~C~iC~~~-~~~vv~--lPC~H~~~C~~Ca 444 (447)
..|-+|.+. ..+.|. ++|+|.. |..|.
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl 33 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSY-CDECL 33 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEE-CHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChHH-hHHHC
Confidence 589999974 445555 9999986 88885
No 77
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=47.98 E-value=6.2 Score=36.14 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=22.8
Q ss_pred cccccccccCcceEEEecCCcccccccc
Q 013205 416 KVLCRVCFEGDISVVLLPCRHRILCRYD 443 (447)
Q Consensus 416 ~~~C~iC~~~~~~vv~lPC~H~~~C~~C 443 (447)
...|.||++-=.|=|.+||||.. |..|
T Consensus 106 ~f~CPI~~elm~DPV~~~~Ghtf-er~~ 132 (179)
T 2f42_A 106 YLCGKISFELMREPCITPSGITY-DRKD 132 (179)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEE-EHHH
T ss_pred hhcccCccccCCCCeECCCCCEE-CHHH
Confidence 35899999999999999999965 6655
No 78
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=44.61 E-value=3.9 Score=30.63 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=15.5
Q ss_pred ccccccccCcceEEEecCCc
Q 013205 417 VLCRVCFEGDISVVLLPCRH 436 (447)
Q Consensus 417 ~~C~iC~~~~~~vv~lPC~H 436 (447)
..|+||++.+-+-+..||.+
T Consensus 7 ~~CrIC~~~~~~~l~~PC~C 26 (60)
T 1vyx_A 7 PVCWICNEELGNERFRACGC 26 (60)
T ss_dssp CEETTTTEECSCCCCCSCCC
T ss_pred CEeEEeecCCCCceecCcCC
Confidence 47999998766666799763
No 79
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=31.75 E-value=23 Score=31.61 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=24.6
Q ss_pred cccccccccC-----cceEEEecCCcccccccccC
Q 013205 416 KVLCRVCFEG-----DISVVLLPCRHRILCRYDHL 445 (447)
Q Consensus 416 ~~~C~iC~~~-----~~~vv~lPC~H~~~C~~Ca~ 445 (447)
...|.+|... ....+..-|.|.| |..|..
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~V-C~~C~~ 101 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFV-CKSCSH 101 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEE-CGGGEE
T ss_pred CccchhhcCccccccCCCCcCCCCCchh-hccccc
Confidence 3489999986 6788999999999 999973
No 80
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=30.56 E-value=11 Score=32.18 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=0.0
Q ss_pred eEEEecCCccccccccc
Q 013205 428 SVVLLPCRHRILCRYDH 444 (447)
Q Consensus 428 ~vv~lPC~H~~~C~~Ca 444 (447)
.++..||+|.. +..|-
T Consensus 78 ~v~~~~C~H~F-H~~CI 93 (117)
T 4a0k_B 78 TVAWGVCNHAF-HFHCI 93 (117)
T ss_dssp -----------------
T ss_pred ccccCCcCceE-cHHHH
Confidence 35567999985 66664
No 81
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=24.59 E-value=28 Score=30.27 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=23.8
Q ss_pred hcccccccccCc-----ceEEEecCCcccccccccC
Q 013205 415 EKVLCRVCFEGD-----ISVVLLPCRHRILCRYDHL 445 (447)
Q Consensus 415 e~~~C~iC~~~~-----~~vv~lPC~H~~~C~~Ca~ 445 (447)
+...|.+|...- ...+..-|.|.+ |..|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~V-C~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNV-CTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEE-ETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCccc-ccccCC
Confidence 345799997655 677888999998 999974
Done!