BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013207
(447 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XGM2|MRE11_ARATH Double-strand break repair protein MRE11 OS=Arabidopsis thaliana
GN=MRE11 PE=2 SV=1
Length = 720
Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/435 (89%), Positives = 420/435 (96%)
Query: 6 REDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHEN 65
RED ++T+R+LVATDCHLGYMEKDEIRRHDSF+AFEEICSIAE+K+VDF+LLGGDLFHEN
Sbjct: 3 REDFSDTLRVLVATDCHLGYMEKDEIRRHDSFKAFEEICSIAEEKQVDFLLLGGDLFHEN 62
Query: 66 KPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIH 125
KPSR+TLVKAIEILRRHCLND+PVQFQVVSDQ VNFQN FG VNYEDPHFNVGLPVFSIH
Sbjct: 63 KPSRTTLVKAIEILRRHCLNDKPVQFQVVSDQTVNFQNAFGQVNYEDPHFNVGLPVFSIH 122
Query: 126 GNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLG 185
GNHDDPAGVDNLSA+DILSACNLVNYFGKMVLGGSGVG+IT+YPIL++KGST VALYGLG
Sbjct: 123 GNHDDPAGVDNLSAIDILSACNLVNYFGKMVLGGSGVGQITLYPILMKKGSTTVALYGLG 182
Query: 186 NIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRF 245
NIRDERLNRMFQTPHAVQWMRPE QE C VSDWFNILVLHQNRVK+NPKNAI+EHFLPRF
Sbjct: 183 NIRDERLNRMFQTPHAVQWMRPEVQEGCDVSDWFNILVLHQNRVKSNPKNAISEHFLPRF 242
Query: 246 LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPT 305
LDF+VWGHEHECLIDPQEV GMGFH+TQPGSSVATSLI+GESKPKHVLLLEIK NQYRPT
Sbjct: 243 LDFIVWGHEHECLIDPQEVSGMGFHITQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPT 302
Query: 306 KIPLTSVRPFEYTEIILKDEADIDPDDQNSILEHLDKVVRNLIERSSKKTVNRSELKLPL 365
KIPLTSVRPFEYTEI+LKDE+DIDP+DQNSILEHLDKVVRNLIE++SKK VNRSE+KLPL
Sbjct: 303 KIPLTSVRPFEYTEIVLKDESDIDPNDQNSILEHLDKVVRNLIEKASKKAVNRSEIKLPL 362
Query: 366 VRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKSSKKSKAEAKIDDFERLRPEELN 425
VRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSK+SKK ++EA IDD ERLRPEELN
Sbjct: 363 VRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKASKKGRSEANIDDSERLRPEELN 422
Query: 426 QQNIEALVAENNLVL 440
QQNIEALVAE+NL +
Sbjct: 423 QQNIEALVAESNLKM 437
>sp|P49959|MRE11_HUMAN Double-strand break repair protein MRE11A OS=Homo sapiens GN=MRE11A
PE=1 SV=3
Length = 708
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 209/440 (47%), Positives = 290/440 (65%), Gaps = 24/440 (5%)
Query: 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP 67
D NT +ILVATD HLG+MEKD +R +D+F +EI +A++ EVDF+LLGGDLFHENKP
Sbjct: 8 DDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGDLFHENKP 67
Query: 68 SRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQ-NKFGHVNYEDPHFNVGLPVFSIHG 126
SR TL +E+LR++C+ DRPVQF+++SDQ+VNF +KF VNY+D + N+ +PVFSIHG
Sbjct: 68 SRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHG 127
Query: 127 NHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGN 186
NHDDP G D L A+DILS VN+FG+ + V +I + P+L++KGST +ALYGLG+
Sbjct: 128 NHDDPTGADALCALDILSCAGFVNHFGRSM----SVEKIDISPVLLQKGSTKIALYGLGS 183
Query: 187 IRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFL 246
I DERL RMF V +RP+ E + WFN+ V+HQNR K N I E FL F+
Sbjct: 184 IPDERLYRMF-VNKKVTMLRPKEDE----NSWFNLFVIHQNRSKHGSTNFIPEQFLDDFI 238
Query: 247 DFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTK 306
D V+WGHEHEC I P + F+++QPGSSV TSL GE+ KHV LL IK + K
Sbjct: 239 DLVIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHK 298
Query: 307 IPLTSVRPFEYTEIILKDEADI-DPDD-------QNSILEHLDKVVRNLIERSSKKTVNR 358
IPL +VR F +I+L + DI +PD+ Q+ LE +++++ N ER ++ N
Sbjct: 299 IPLHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLEN-AER--ERLGNS 355
Query: 359 SELKLPLVRIKVDYS-GFMTINPQRFGQKYVGKVANPQDILIFSKSSKKSKAEAKIDDFE 417
+ + PLVR++VDYS GF + RF QK+V +VANP+DI+ F + ++ + + +F
Sbjct: 356 HQPEKPLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFG 415
Query: 418 RL--RPEELNQQNIEALVAE 435
+L +P E +E LV +
Sbjct: 416 KLITKPSEGTTLRVEDLVKQ 435
>sp|Q60HE6|MRE11_MACFA Double-strand break repair protein MRE11A OS=Macaca fascicularis
GN=MRE11A PE=2 SV=1
Length = 707
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 209/440 (47%), Positives = 288/440 (65%), Gaps = 24/440 (5%)
Query: 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP 67
D NT +ILVATD HLG+MEKD +R +D+F +EI +A EVDF+LLGGDLFHENKP
Sbjct: 8 DDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLARGNEVDFILLGGDLFHENKP 67
Query: 68 SRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQ-NKFGHVNYEDPHFNVGLPVFSIHG 126
SR TL +E+LR++C+ DRPVQF+++SDQ+VNF +KF VNY+D + N+ +PVFSIHG
Sbjct: 68 SRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHG 127
Query: 127 NHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGN 186
NHDDP G D L A+DILS VN+FG+ + V +I + P+L++KGST +ALYGLG+
Sbjct: 128 NHDDPTGADALCALDILSCAGFVNHFGRSM----SVEKIDISPVLLQKGSTKIALYGLGS 183
Query: 187 IRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFL 246
I DERL RMF V +RP+ E + WFN+ V+HQNR K N I E FL F+
Sbjct: 184 IPDERLYRMF-VNKKVTMLRPKEDE----NSWFNLFVIHQNRSKHGSTNFIPEQFLDDFI 238
Query: 247 DFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTK 306
D V+WGHEHEC I P + F+++QPGSSV TSL GE+ KHV LL IK + K
Sbjct: 239 DLVIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMQK 298
Query: 307 IPLTSVRPFEYTEIILKDEADI-DPDD-------QNSILEHLDKVVRNLIERSSKKTVNR 358
IPL +VR F +I+L + DI +PD+ Q+ LE +++++ N ER ++ N
Sbjct: 299 IPLHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLEN-AER--ERLGNS 355
Query: 359 SELKLPLVRIKVDYS-GFMTINPQRFGQKYVGKVANPQDILIFSKSSKKSKAEAKIDDFE 417
+ + PLVR++VDYS GF + RF QK+V +VANP+DI+ F + ++ + + +F
Sbjct: 356 RQPEKPLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFG 415
Query: 418 RL--RPEELNQQNIEALVAE 435
+L +P E +E LV +
Sbjct: 416 KLITKPSEGTTLRVEDLVKQ 435
>sp|Q9W6K1|MRE11_XENLA Double-strand break repair protein MRE11 OS=Xenopus laevis GN=mre11
PE=2 SV=1
Length = 711
Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust.
Identities = 209/439 (47%), Positives = 283/439 (64%), Gaps = 20/439 (4%)
Query: 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP 67
D +T +ILVATD HLG+MEKD +R +DSF AF+EI +A+ EVDF+LLGGDLFH+NKP
Sbjct: 9 DDEDTFKILVATDIHLGFMEKDAVRGNDSFVAFDEILRLAQDNEVDFLLLGGDLFHDNKP 68
Query: 68 SRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNF-QNKFGHVNYEDPHFNVGLPVFSIHG 126
SR TL +E LR++C+ DRP++F+V+SDQ+VNF +KF VNY+D + N+ LPVFS+HG
Sbjct: 69 SRRTLHICLEQLRKYCMGDRPIEFEVLSDQSVNFGYSKFPWVNYQDNNLNISLPVFSVHG 128
Query: 127 NHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGN 186
NHDDP G D L A+DILS+ LVN+FG+ + V +I + P+L++KG + +ALYGLG+
Sbjct: 129 NHDDPTGADALCALDILSSAGLVNHFGR----ATSVEKIDISPVLLQKGHSKIALYGLGS 184
Query: 187 IRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFL 246
I DERL RMF V +RP E S WFN+ V+HQNR K P N I E FL FL
Sbjct: 185 IPDERLYRMFVNKQ-VMMLRPREDE----SSWFNLFVIHQNRSKHGPTNYIPEQFLDEFL 239
Query: 247 DFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTK 306
D V+WGHEHEC I P F+++QPGSSVATSL GE++ KHV LL IK + K
Sbjct: 240 DLVIWGHEHECKIAPTRNEQQLFYVSQPGSSVATSLSPGEAEKKHVGLLRIKGKKMNMQK 299
Query: 307 IPLTSVRPFEYTEIILKDEADI-DPDDQNSILE----HLDKVVRNLIERSSKKTVNRSEL 361
IPL +VR F +++L D DI +PD+ E ++KV L ++ N +
Sbjct: 300 IPLQTVRQFFIEDLVLSDYPDIFNPDNPRVTQEIETFCIEKVEAMLDTAERERLGNPRQP 359
Query: 362 KLPLVRIKVDYS-GFMTINPQRFGQKYVGKVANPQDIL-IFSKSSKKSKAEAKIDDFERL 419
PL+R++VDY+ GF N RF QK+V + ANP+DI+ F +K K ++ +F ++
Sbjct: 360 DKPLIRLRVDYTGGFEPFNTLRFSQKFVDRTANPKDIIHFFRHKEQKDKKDSITINFGKI 419
Query: 420 RPEEL---NQQNIEALVAE 435
+ L +E LV E
Sbjct: 420 DSKPLLEGTTLRVEDLVKE 438
>sp|Q9UVN9|MRE11_COPC7 Double-strand break repair protein MRE11 OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
GN=MRE11 PE=3 SV=1
Length = 731
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 201/464 (43%), Positives = 290/464 (62%), Gaps = 44/464 (9%)
Query: 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP 67
D +T++IL+ATD H+GY+E+D IR DS F EI +A + EVDF+LL GDLFHENKP
Sbjct: 18 DPEDTIKILLATDNHIGYLERDPIRGQDSINTFREILQLAVKNEVDFILLAGDLFHENKP 77
Query: 68 SRSTLVKAIEILRRHCLNDRPVQFQVVSD----QAVNFQNKFGHVNYEDPHFNVGLPVFS 123
SR L + + +LR + L D+P+Q +++SD +A F F +NYEDP+FN+ +PVFS
Sbjct: 78 SRDCLYQTLALLREYTLGDKPIQVELLSDPDEGKAAGFS--FPAINYEDPNFNISIPVFS 135
Query: 124 IHGNHDDPAGVD---NLSAVDILSACNLVNYFGKMVL----GGSGVGEITVYPILIRKGS 176
IHGNHDDP G L A+D+LS L+NY GK L + I V P+L+RKGS
Sbjct: 136 IHGNHDDPQGPGVNGALCALDVLSVSGLLNYMGKFDLPTSDADAATTGIAVRPVLLRKGS 195
Query: 177 TAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNA 236
T + +YG+GN++D+R++ ++ +M P+ ++E WFNIL++HQNRVK P+
Sbjct: 196 TKLGMYGVGNVKDQRMHFELRSNRVRMYM-PKDKDE-----WFNILLVHQNRVKHGPQEY 249
Query: 237 INEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLE 296
+ E +D VVWGHEH+C I P+ V G +++TQPGSSVATSL +GE+ KHV LLE
Sbjct: 250 VPEGMFDDSVDLVVWGHEHDCRIIPEPVAGKNYYITQPGSSVATSLADGEAIEKHVALLE 309
Query: 297 IKENQYRPTKIPLTSVRPFEYTEIILKDEAD---IDPDDQNSILEHLDKVVRNLIERSSK 353
IK +++ T IPL +VRPF +E++L+D A+ +D +DQ I ++L + V +LI+++
Sbjct: 310 IKGKEFQLTPIPLRTVRPFVISEVVLEDAAEEEGLDVNDQMEITKYLKQKVNDLIDQAQA 369
Query: 354 KTVNRSELK-----------LPLVRIKVDYSGFM-TINPQRFGQKYVGKVANPQDILIFS 401
R+ LPLVR+KVD + T NP RFGQ++ G+VANP+D+L+F
Sbjct: 370 LWEERNARSIEAGDEEIPPMLPLVRLKVDTTNVTQTSNPIRFGQEFQGRVANPRDLLVFH 429
Query: 402 KSSKKSK----------AEAKIDDFERLRPEELNQQNIEALVAE 435
+S K K E IDD + E+L + ++ LV E
Sbjct: 430 RSKKAGKRGAGKVDIDQPELSIDDPDLTVSEKLAKVRVKTLVRE 473
>sp|Q61216|MRE11_MOUSE Double-strand break repair protein MRE11A OS=Mus musculus GN=Mre11a
PE=2 SV=1
Length = 706
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 198/418 (47%), Positives = 278/418 (66%), Gaps = 23/418 (5%)
Query: 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP 67
D +T +ILVATD HLG+MEKD +R +D+F F+EI +A + EVDF+LLGGDLFHENKP
Sbjct: 8 DDEDTFKILVATDIHLGFMEKDAVRGNDTFVTFDEILRLALENEVDFILLGGDLFHENKP 67
Query: 68 SRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQ-NKFGHVNYEDPHFNVGLPVFSIHG 126
SR TL +E+LR++C+ DRPVQF+V+SDQ+VNF +KF VNY+D + N+ +PVFSIHG
Sbjct: 68 SRKTLHSCLELLRKYCMGDRPVQFEVISDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHG 127
Query: 127 NHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGN 186
NHDDP G D L A+D+LS VN+FG+ + V ++ + P+L++KGST +ALYGLG+
Sbjct: 128 NHDDPTGADALCALDVLSCAGFVNHFGRSM----SVEKVDISPVLLQKGSTKLALYGLGS 183
Query: 187 IRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFL 246
I DERL RMF V +RP+ E + WFN+ V+HQNR K N I E FL F+
Sbjct: 184 IPDERLYRMF-VNKKVTMLRPKEDE----NSWFNLFVIHQNRSKHGNTNFIPEQFLDDFI 238
Query: 247 DFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTK 306
D V+WGHEHEC I P + F+++QPGSSV TSL GE+ KHV LL IK + K
Sbjct: 239 DLVIWGHEHECKIGPIKNEQQLFYVSQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMQK 298
Query: 307 IPLTSVRPFEYTEIILKDEADI-DPDD-------QNSILEHLDKVVRNLIERSSKKTVNR 358
+PL +VR F +++L + ++ +PD+ Q+ LE +++++ + ER ++ N
Sbjct: 299 LPLRTVRRFFIEDVVLANHPNLFNPDNPKVTQAIQSFCLEKIEEML-DSAER--ERLGNP 355
Query: 359 SELKLPLVRIKVDYS-GFMTINPQRFGQKYVGKVANPQDIL-IFSKSSKKSKAEAKID 414
+ PL+R++VDYS GF N RF QK+V +VANP+D++ F +K K +I+
Sbjct: 356 QQPGKPLIRLRVDYSGGFEPFNVLRFSQKFVDRVANPKDVIHFFRHREQKGKTGEEIN 413
>sp|Q9JIM0|MRE11_RAT Double-strand break repair protein MRE11A OS=Rattus norvegicus
GN=Mre11a PE=2 SV=1
Length = 706
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/418 (46%), Positives = 276/418 (66%), Gaps = 23/418 (5%)
Query: 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP 67
D +T +ILVATD HLG+MEKD +R +D+F F+EI +A + EVDF+LLGGDLFHENKP
Sbjct: 8 DDEDTFKILVATDIHLGFMEKDAVRGNDTFVTFDEILRLALENEVDFILLGGDLFHENKP 67
Query: 68 SRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQ-NKFGHVNYEDPHFNVGLPVFSIHG 126
SR TL +E+LR++C+ DRPVQF+++SDQ+VNF +KF VNY D + N+ +PVFSIHG
Sbjct: 68 SRKTLHSCLELLRKYCMGDRPVQFEIISDQSVNFGFSKFPWVNYRDGNLNISIPVFSIHG 127
Query: 127 NHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGN 186
NHDDP G D L A+D+LS VN+FG+ + V ++ + P+L++KGST +ALYGLG+
Sbjct: 128 NHDDPTGADALCALDVLSCAGFVNHFGRSM----SVEKVDISPVLLQKGSTKLALYGLGS 183
Query: 187 IRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFL 246
I DERL RMF V +RP+ E + WFN+ V+HQNR K N I E FL F+
Sbjct: 184 IPDERLYRMF-VNKKVTMLRPKEDE----NSWFNLFVIHQNRSKHGSTNFIPEQFLDDFI 238
Query: 247 DFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTK 306
D V+WGHEHEC I P F+++QPGSSV T+L GE+ KHV LL +K + K
Sbjct: 239 DLVIWGHEHECKIGPTRNEQQLFYVSQPGSSVVTALSPGETVKKHVGLLRVKGRKMNMQK 298
Query: 307 IPLTSVRPFEYTEIILKDEADI-DPDD-------QNSILEHLDKVVRNLIERSSKKTVNR 358
+PL +VR F +++L + + +PD+ Q+ LE +++++ + ER ++ N
Sbjct: 299 LPLRTVRQFFMEDVVLANHPSLFNPDNPKVTQAIQSFCLEKIEEML-DSAER--ERLGNP 355
Query: 359 SELKLPLVRIKVDYS-GFMTINPQRFGQKYVGKVANPQDIL-IFSKSSKKSKAEAKID 414
+ + PL+R++VDYS GF N RF QK+V +VANP+D++ F +K K +I+
Sbjct: 356 QQPEKPLIRLRVDYSGGFEPFNVLRFSQKFVDRVANPKDVIHFFRHREQKGKTGEEIN 413
>sp|Q9C291|MRE11_NEUCR Double-strand break repair protein mus-23 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=mus-23 PE=3 SV=3
Length = 739
Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/423 (45%), Positives = 269/423 (63%), Gaps = 29/423 (6%)
Query: 5 PREDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHE 64
PR + A+T+RILV+TD H+GY E+ +R+ DS+ F+EI IA++++VD VLLGGDLFHE
Sbjct: 2 PRSE-ADTIRILVSTDNHVGYAERHPVRKDDSWRTFDEIMQIAKKQDVDMVLLGGDLFHE 60
Query: 65 NKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSI 124
NKPSR ++ + + LR+HCL +P + + +SD A F+ F VNYEDP NV +PVFSI
Sbjct: 61 NKPSRKSMYQVMRSLRKHCLGMKPCELEFLSDAAEVFEGAFPFVNYEDPDINVAIPVFSI 120
Query: 125 HGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGL 184
HGNHDDP+G + ++D+L A LVNYFG++ I V PIL++KG T +ALYGL
Sbjct: 121 HGNHDDPSGDGHYCSLDLLQAAGLVNYFGRV----PEADNIHVKPILLQKGRTKMALYGL 176
Query: 185 GNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPR 244
N+RDER++R F+ + V++ RP Q+ +DWFN+L LHQN + + E+ LP
Sbjct: 177 SNVRDERMHRTFRD-NKVRFYRPNQQK----NDWFNLLALHQNHYAHTRTSYVAENMLPD 231
Query: 245 FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRP 304
F+D V+WGHEHECLIDP P GFH+ QPGSSVATSL+ GE+ PKHV +L I ++
Sbjct: 232 FMDLVIWGHEHECLIDPVRNPETGFHVMQPGSSVATSLVPGEAVPKHVAILNITGRKFEV 291
Query: 305 TKIPLTSVRPFEYTEIILKDEADIDP-DDQNS---ILEHLDKVVRNLIERSSKK------ 354
KIPL +VRPF EI+L + D QN+ I + L +V +IE ++ +
Sbjct: 292 DKIPLKTVRPFVTREIVLASDKRFKGLDKQNNRHEITKRLMVIVNEMIEEANAEWRAVHA 351
Query: 355 ----TVNRSELKLPLVRIKVDYSG-----FMTINPQRFGQKYVGKVANPQDILIFSKSSK 405
E LPLVR+KVDY+ + NP RF ++ GKVAN D++ F ++K
Sbjct: 352 EDDDMDEDMEPPLPLVRLKVDYTAPDGARYEVENPHRFSNRFTGKVANHNDVVRFHCNTK 411
Query: 406 KSK 408
K
Sbjct: 412 GKK 414
>sp|Q9IAM7|MRE11_CHICK Double-strand break repair protein MRE11 OS=Gallus gallus GN=MRE11
PE=2 SV=1
Length = 700
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/404 (47%), Positives = 267/404 (66%), Gaps = 22/404 (5%)
Query: 7 EDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENK 66
+D +T +IL+ATD HLGY+EKD +R +D+F F EI A++ EVDF+LLGGDLFHENK
Sbjct: 7 QDDEDTFKILIATDIHLGYLEKDAVRGNDTFVTFNEILEHAQKNEVDFILLGGDLFHENK 66
Query: 67 PSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQ-NKFGHVNYEDPHFNVGLPVFSIH 125
PSR T+ +E LR++C+ DRPV F+V+SDQAVNFQ +KF VNY+D + N+ +P+FSIH
Sbjct: 67 PSRKTIHTCLESLRKYCMGDRPVSFEVLSDQAVNFQLSKFPWVNYQDENLNIFMPIFSIH 126
Query: 126 GNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLG 185
GNHDDP GVD L A+DILS L+N+FG+ + V +I + PIL+RKG T +ALYGLG
Sbjct: 127 GNHDDPTGVDALCALDILSCAGLLNHFGR----STSVEKIDISPILLRKGRTKIALYGLG 182
Query: 186 NIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRF 245
I DERL RMF V +RP+ E+ WFN+ V+HQNR K N I E FL F
Sbjct: 183 AIPDERLYRMFVNKQ-VTMLRPKEDEDS----WFNMFVIHQNRSKHGATNYIPEQFLDDF 237
Query: 246 LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPT 305
++ VWGHEHEC I P + F++TQPGSSV TSL GE+ KH+ LL +K + +
Sbjct: 238 INLAVWGHEHECKITPAQNEQQHFYVTQPGSSVVTSLSPGEAVKKHIGLLRVKGKKMKMQ 297
Query: 306 KIPLTSVRPFEYTEIILKDEADI-DPDD-------QNSILEHLDKVVRNLIERSSKKTVN 357
+I L +VR F +++L D ++ +PD+ Q +E ++ ++ N ER ++ N
Sbjct: 298 RIALETVRTFYMEDVVLADHPELFNPDNPKVTQAIQAFCMEKVEMMLDN-AER--ERLGN 354
Query: 358 RSELKLPLVRIKVDYS-GFMTINPQRFGQKYVGKVANPQDILIF 400
+ + PL+ ++VDY+ GF RF QKY+ +VANP+DI+ F
Sbjct: 355 PRQPQKPLIILRVDYTGGFEPFIVHRFSQKYMDRVANPKDIIHF 398
>sp|Q09683|RAD32_SCHPO DNA repair protein rad32 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad32 PE=1 SV=1
Length = 649
Score = 343 bits (881), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 183/445 (41%), Positives = 275/445 (61%), Gaps = 35/445 (7%)
Query: 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRS 70
NT+RIL+++D H+GY EKD +R +DSF +F EI IA +++VD +LLGGD+FH+NKPSR
Sbjct: 16 NTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRK 75
Query: 71 TLVKAIEILRRHCLNDRPVQFQVVSDQAVNF-QNKFGHVNYEDPHFNVGLPVFSIHGNHD 129
L +A+ LR +CL D+P + +++SD ++ ++NY DP+ NV +PVFSIHGNHD
Sbjct: 76 ALYQALRSLRLNCLGDKPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHD 135
Query: 130 DPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRD 189
DP+G SA+DIL LVNYFG++ + I V PIL++KG T +ALYG+ N+RD
Sbjct: 136 DPSGDGRYSALDILQVTGLVNYFGRVPENDN----IVVSPILLQKGFTKLALYGISNVRD 191
Query: 190 ERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFV 249
ERL F+ + V+++RP+ + +WFN+L +HQN P + + E F+ F DFV
Sbjct: 192 ERLYHSFRE-NKVKFLRPDLYRD----EWFNLLTVHQNHSAHTPTSYLPESFIQDFYDFV 246
Query: 250 VWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPL 309
+WGHEHECLID P F + QPGS++ATSL GE+ PKH +L I + KI L
Sbjct: 247 LWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRL 306
Query: 310 TSVRPFEYTEIILKDEADIDP--DDQNSILEHLDKVVRNLIERSSKK---------TVNR 358
+VRPF +IIL + + I P +++ +L +L V I ++ + V
Sbjct: 307 RTVRPFIMKDIILSEVSSIPPMVENKKEVLTYLISKVEEAITEANAQWYEAQGTVPVVEN 366
Query: 359 SELKLPLVRIKVDYS-GFMTINPQRFGQKYVGKVANPQDILIFSKSSKKSKAE------- 410
+ LPL+R++VDY+ G+ T NPQRF ++VG+VAN D++ F K ++++
Sbjct: 367 EKPPLPLIRLRVDYTGGYQTENPQRFSNRFVGRVANATDVVQFYLKKKYTRSKRNDGLYT 426
Query: 411 AKIDDFERLRPEELNQQNIEALVAE 435
+ ++D ++N +E+LV E
Sbjct: 427 SAVEDI------KINSLRVESLVNE 445
>sp|P32829|MRE11_YEAST Double-strand break repair protein MRE11 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRE11 PE=1
SV=2
Length = 692
Score = 313 bits (803), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 176/453 (38%), Positives = 269/453 (59%), Gaps = 39/453 (8%)
Query: 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRS 70
+T+RIL+ TD H+GY E D I DS++ F E+ +A+ VD V+ GDLFH NKPS+
Sbjct: 7 DTIRILITTDNHVGYNENDPITGDDSWKTFHEVMMLAKNNNVDMVVQSGDLFHVNKPSKK 66
Query: 71 TLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQ-NKFGHVNYEDPHFNVGLPVFSIHGNHD 129
+L + ++ LR C+ D+P + +++SD + F ++F +VNYEDP+FN+ +PVF I GNHD
Sbjct: 67 SLYQVLKTLRLCCMGDKPCELELLSDPSQVFHYDEFTNVNYEDPNFNISIPVFGISGNHD 126
Query: 130 DPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRD 189
D +G L +DIL A L+N+FGK++ +I V P+L +KGST +ALYGL +RD
Sbjct: 127 DASGDSLLCPMDILHATGLINHFGKVIESD----KIKVVPLLFQKGSTKLALYGLAAVRD 182
Query: 190 ERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFV 249
ERL R F+ V + P +E +WFN++ +HQN + E FLP FLD V
Sbjct: 183 ERLFRTFKD-GGVTFEVPTMRE----GEWFNLMCVHQNHTGHTNTAFLPEQFLPDFLDMV 237
Query: 250 VWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQY-RPTKIP 308
+WGHEHEC+ + P F + QPGSSVATSL E E++PK+V +L+IK + + T IP
Sbjct: 238 IWGHEHECIPNLVHNPIKNFDVLQPGSSVATSLCEAEAQPKYVFILDIKYGEAPKMTPIP 297
Query: 309 LTSVRPFEYTEIILKDEADIDPDDQNS----ILEHLDKVVRNLIERSSKKTVNR------ 358
L ++R F+ I L+D + P D+++ ++E +++++R+ E + +K +
Sbjct: 298 LETIRTFKMKSISLQDVPHLRPHDKDATSKYLIEQVEEMIRDANEETKQKLADDGEGDMV 357
Query: 359 SELKLPLVRIKVDYSG---------FMTINPQRFGQKYVGKVANPQDILIFSKS------ 403
+EL PL+R++VDYS + NP+RF ++VG+VAN +++ F K
Sbjct: 358 AELPKPLIRLRVDYSAPSNTQSPIDYQVENPRRFSNRFVGRVANGNNVVQFYKKRSPVTR 417
Query: 404 SKKSKAEAKI---DDFERLRPEELNQQNIEALV 433
SKKS D E+L E + ++ LV
Sbjct: 418 SKKSGINGTSISDRDVEKLFSESGGELEVQTLV 450
>sp|Q23255|MRE11_CAEEL Double-strand break repair protein mre-11 OS=Caenorhabditis elegans
GN=mre-11 PE=1 SV=2
Length = 728
Score = 310 bits (795), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 189/481 (39%), Positives = 280/481 (58%), Gaps = 63/481 (13%)
Query: 2 GQQPREDIA-NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGD 60
G +P D + + ++ILVATD H GY E D+ FEE+ IA +++VD +LLGGD
Sbjct: 54 GDEPAHDESEDIIKILVATDIHCGYGENKANIHMDAVNTFEEVLQIATEQKVDMILLGGD 113
Query: 61 LFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNF-QNKFGHVNYEDPHFNVGL 119
LFHEN PSR + ++LR++CLN P+ + +SD +VNF Q+ FGHVNY D + NVGL
Sbjct: 114 LFHENNPSREVQHRVTQLLRQYCLNGNPIALEFLSDASVNFNQSVFGHVNYYDQNLNVGL 173
Query: 120 PVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAV 179
P+F+IHGNHDD +G L+A+D+L LVN FGK S + E V PIL+RKG T +
Sbjct: 174 PIFTIHGNHDDLSG-KGLTALDLLHESGLVNLFGKH----SNIQEFIVSPILLRKGETRL 228
Query: 180 ALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNR----VKTNPKN 235
ALYG+G+ RD+RL R F+ +++ ++RP A E DWFN+ VLHQNR + + N
Sbjct: 229 ALYGIGSQRDDRLVRAFKN-NSISFLRPNAGAE----DWFNLFVLHQNRPRRAMHRSTGN 283
Query: 236 AINEHFLPRFLDFVVWGHEHECLIDPQ-----EVPGMGFHLTQPGSSVATSLIEGESKPK 290
+ E +P+F D ++WGHEHEC DPQ E G GF++ QPGS+VATSL E+ K
Sbjct: 284 FLPESLIPQFFDLLIWGHEHECKPDPQYVASSEAVGDGFYILQPGSTVATSLTPEEALQK 343
Query: 291 HVLLLEIKENQYRPTKIPLTSVRPFEYTEIILKDEADIDPDDQNSILE----------HL 340
+ L++IK ++ IPL +VRP E++L D P IL+ ++
Sbjct: 344 NAFLIKIKGRKFASKPIPLQTVRPMVCDELLL----DKIPPGSRPILKTDRPKHTDGRYI 399
Query: 341 DKV-----VRNLIERSSKKTVNRSELKLPLVRIKVDYSG-FMTINP---QRFGQKYVGKV 391
D++ + +I + K R + +LPL+R+KV Y G ++ I P +R G +Y V
Sbjct: 400 DEIAIEAKINEMITTAKAKRRPR-QPELPLIRLKVIYDGDWLNITPANAKRIGLRYENVV 458
Query: 392 ANPQDILIFSKSSKKSKAEAKIDDFERLRPEELNQQNIEAL------VAENNL--VLHDY 443
AN D++ K++K + + + + N++NI + V+ NL +++DY
Sbjct: 459 ANAVDMVFIKKNNKPKEGKLQTE----------NEKNITEMADEMGQVSATNLQTIINDY 508
Query: 444 F 444
F
Sbjct: 509 F 509
>sp|Q8SRV0|MRE11_ENCCU Double-strand break repair protein MRE11 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=MRE11 PE=3 SV=1
Length = 567
Score = 243 bits (620), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 150/422 (35%), Positives = 228/422 (54%), Gaps = 57/422 (13%)
Query: 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72
++IL+ +D HLGY E D + DS++ FEEI IA+++ VD VL GGDLFHEN+PSRS L
Sbjct: 1 MKILITSDNHLGYRESDPVLLDDSYDTFEEILGIAQRERVDLVLQGGDLFHENRPSRSCL 60
Query: 73 VKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132
+ I + RR+C+ + + S+ A+NF D + + +PV SIHGNHDDP+
Sbjct: 61 NRTIGLFRRYCIGNERSGLR--SNLALNFH---------DQNIGISIPVVSIHGNHDDPS 109
Query: 133 GVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERL 192
G+ +S +DIL + LVNY GK L + I VYP+L+ K VA+YGLG+I+D RL
Sbjct: 110 GISMVSPIDILQSAGLVNYIGKYNL----IDRIDVYPLLLEK-EYRVAIYGLGHIKDRRL 164
Query: 193 NRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFVVWG 252
RMF V + RPE W+N+L+LHQNR+ K + + F D +V+G
Sbjct: 165 YRMFCEGRIV-FHRPE-----DYDSWYNVLILHQNRI-PREKEHFSSDLVEGFFDLIVYG 217
Query: 253 HEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSV 312
HEHE ++ V G L QPGS+V TSL EGE K+ +L I E + + L SV
Sbjct: 218 HEHESMV----VKGDCLIL-QPGSTVRTSLCEGERHDKYAYILRIGE-ECTLEHVKLRSV 271
Query: 313 RPFEYTEIILKDEADIDPDDQNSILEHLDKVVR---------NLIERSSKKTVNRSE--- 360
RP + +++ +++ +N I +D + I+ +K+ R +
Sbjct: 272 RPLLLDTLRIEERDNVEEKVENKIRGMIDLGRKKESLFNKEITAIDVDTKRFKCRGDSNE 331
Query: 361 ----------------LKLPLVRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKSS 404
++PLV++K++ G ++ RF ++ G VANP D+L S+ +
Sbjct: 332 ACGAGPVCKGYQLEEKTRIPLVKLKIELCGDEVLDKHRFSAQFKGLVANPSDMLTISRKT 391
Query: 405 KK 406
++
Sbjct: 392 RR 393
>sp|O26641|MRE11_METTH DNA double-strand break repair protein Mre11 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=mre11 PE=3 SV=1
Length = 587
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 161/388 (41%), Gaps = 86/388 (22%)
Query: 19 TDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEI 78
+DCHLG + ++R + FEAF A QK+VDF+++ GDLFH N P+ +E
Sbjct: 177 SDCHLGAQKHPDLRELE-FEAFRMALDDALQKDVDFMIIAGDLFHSNIPN-------MET 228
Query: 79 LRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHD-DPAGVDNL 137
++R L R V+ G+P++ +G+HD P+ +
Sbjct: 229 VKRATLELRRVR-------------------------EAGVPIYVNYGSHDYSPS---ST 260
Query: 138 SAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERLNRMFQ 197
S +DIL + +++ + + G E TV + G+ L G +
Sbjct: 261 SMIDILESAGVIDKVVRPIPGKKLGLEFTVDE---KTGAKITGLSGRS-----------R 306
Query: 198 TPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKN-----AINEHFLPRFLDFVVWG 252
T A +M+ + +E + D F I + H + P + +++ + PR ++ G
Sbjct: 307 TLEAEYFMKLD-REALEAEDGFRIFLFHSAITQFKPVDLADMESVDLNLFPRGFEYYAGG 365
Query: 253 HEHE--CLIDPQEVPGMGFHLTQPGS---SVATSLIE---GESKPKHVLLLEIKENQYRP 304
H H C I+ P + PG+ S A L E GE++ + L+E + P
Sbjct: 366 HVHRKGCYIEEGYGP-----IVYPGTLFGSYAGDLEENARGETRGYY--LVEFTDRAREP 418
Query: 305 TKIPLTSVRP--FEYTE--IILKDEADIDPDDQNSILEH--LDKVVRNLI--ERSSKKTV 356
+RP FEY E + K+ D I H KVV I E SS +T
Sbjct: 419 ---EFREIRPAEFEYIECDVTGKNSQDAYHQIGREIAGHDVTGKVVMLKIRGELSSGRT- 474
Query: 357 NRSELKLPLVRIKVDYSGFMTINPQRFG 384
S++ +R K++ G + R+G
Sbjct: 475 --SDIDSASIREKLESMGARVVQINRYG 500
>sp|O29231|MRE11_ARCFU DNA double-strand break repair protein Mre11 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=mre11 PE=3 SV=1
Length = 443
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 83/353 (23%), Positives = 155/353 (43%), Gaps = 66/353 (18%)
Query: 19 TDCHLGYMEKDEIRRHDSF-EAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIE 77
D HLGY + ++ R + F +AF+ I A + DFV++ GDLFH + PS T+ +A+E
Sbjct: 7 ADVHLGYEQYNQPWRAEDFAKAFKVIAEKAVESNADFVVIAGDLFHRSLPSPRTIKEAVE 66
Query: 78 ILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNL 137
L F+ + +PVF++ GNHD + ++
Sbjct: 67 TL-------------------WMFRKE-------------NIPVFAVEGNHDKTS--RDI 92
Query: 138 SAVDILSACNLVNYFG--KMVLGGSGVGEITVYPILIRKGST-AVALYGLGNIRDERLNR 194
SA +L + L+N G + + G V + + + + KG V + G +R
Sbjct: 93 SAYHLLESLGLLNVLGLRRNPVRGENVESLRIQNVYLVKGVVDDVEILG------DRHRS 146
Query: 195 MFQTPHAVQWMRPEAQEECQVSDWFNILVLHQN-----RVKTNPKNAINEHFLPRFLDFV 249
+Q + ++P++ + ++LVLHQ + + + + LP +
Sbjct: 147 KWQLEKVLPLLKPQSDK--------SVLVLHQAVKEVVDIDLDMAYELTINDLPE-ASYY 197
Query: 250 VWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPL 309
+GH H P+ G + PGS L E ++ L +K+ R I +
Sbjct: 198 AFGHIHL----PKIYEFDGKAIAYPGSVERYDLREASKIVRYRDELVLKDG-IRKGFILV 252
Query: 310 TSVRPFEYTEIILKDEADIDPDDQNSILEHLDKVVRNLIERSSKKTVNRSELK 362
+ RP E+ EI ++ D++ +D++ +E L+K ++ R+ K+ + ++LK
Sbjct: 253 KNFRP-EFVEIETRELYDVEIEDES--VEGLEKKFLEVLGRADKEGIMVAKLK 302
>sp|Q8U1N9|MRE11_PYRFU DNA double-strand break repair protein Mre11 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=mre11
PE=1 SV=2
Length = 426
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 63/136 (46%), Gaps = 35/136 (25%)
Query: 19 TDCHLGYMEKDEIRRHDSF-EAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIE 77
D HLGY + + +R + F EAF+ IA Q+ VDF+L+ GDLFH ++PS TL KAI
Sbjct: 7 ADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIA 66
Query: 78 ILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNL 137
+L Q+ + ++ PVF+I GNHD
Sbjct: 67 LL------------QIPKEHSI--------------------PVFAIEGNHDRTQ--RGP 92
Query: 138 SAVDILSACNLVNYFG 153
S +++L LV G
Sbjct: 93 SVLNLLEDFGLVYVIG 108
>sp|Q8TRL2|MRE11_METAC DNA double-strand break repair protein Mre11 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=mre11 PE=3 SV=1
Length = 614
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 62/159 (38%), Gaps = 39/159 (24%)
Query: 13 VRILVATDCHLGYME-KDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST 71
+RIL D HLGY + E+RR D F+AFE + A +VD V+ GDLF P+
Sbjct: 5 IRILHTADTHLGYRQYHSEVRRQDFFKAFETVIQDAVDMQVDAVVHAGDLFDSRNPTLED 64
Query: 72 LVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131
L++ + IL R V +P F I GNH+
Sbjct: 65 LLETMNILSRLKA--------------------------------VDIPFFGIVGNHE-- 90
Query: 132 AGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPI 170
N +D+ L GK VG T+Y I
Sbjct: 91 -SKQNTQWLDLFEEMGLAERLGKT---PKLVGNTTIYGI 125
>sp|Q97WG9|MRE11_SULSO DNA double-strand break repair protein Mre11 OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=mre11 PE=3 SV=1
Length = 381
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 102/250 (40%), Gaps = 69/250 (27%)
Query: 13 VRILVATDCHLGYMEKDEIRRH-DSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST 71
V+IL +D HLG + + R D ++ F ++ IA ++ VD ++ GDLF + P+ +
Sbjct: 2 VQILHISDTHLGKRQYSLVEREKDIYDIFSQLVDIAIKEHVDVIIHSGDLFDVSSPTTNA 61
Query: 72 LVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131
LV AI+IL+R L D V +P SI G+HD P
Sbjct: 62 LVMAIKILKR--LKD------------------------------VNIPFLSIPGDHDTP 89
Query: 132 AGVDNLSAVDILSACNLV---NYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIR 188
L +ILS +L+ NY ++ G + +YG+ +I
Sbjct: 90 KRKGYLIPHNILSELDLIKILNYEKPYIIKG-------------------IEVYGIPHIP 130
Query: 189 DERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNA---INEHFLPRF 245
+ + A+ +RP++ +IL+LHQ + P + + LP+
Sbjct: 131 TVSKSILVS---ALSALRPKSSR--------SILLLHQGVKQILPYDGSWQMELGSLPKG 179
Query: 246 LDFVVWGHEH 255
+ GH H
Sbjct: 180 FGYYALGHIH 189
>sp|Q8PUY5|MRE11_METMA DNA double-strand break repair protein Mre11 OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=mre11 PE=3 SV=1
Length = 617
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 62/159 (38%), Gaps = 39/159 (24%)
Query: 13 VRILVATDCHLGYME-KDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST 71
+RIL D HLGY + E+RR D F+AFE + A +VD V+ GDLF P+
Sbjct: 5 IRILHTADTHLGYRQYHSEVRRQDFFKAFETVIKDAVDMQVDAVVHAGDLFDSRNPTLED 64
Query: 72 LVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131
L++ + +L R + +P F I GNH+
Sbjct: 65 LLETMNVLSRLKV--------------------------------ANIPFFGIVGNHESK 92
Query: 132 AGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPI 170
L D+ L GK VG++ +Y I
Sbjct: 93 QSTQWL---DLFEEMGLAGRLGK---APKMVGDVAIYGI 125
>sp|Q96YR6|MRE11_SULTO DNA double-strand break repair protein Mre11 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=mre11 PE=3 SV=1
Length = 387
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 93/247 (37%), Gaps = 62/247 (25%)
Query: 13 VRILVATDCHLGYMEKD-EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST 71
+IL +D HLG + + + R D ++ F ++ IA ++ VD ++ GDLF N P
Sbjct: 4 TQILHISDTHLGKRQYNLDFREQDVYDTFSQLIDIAIKEHVDGIIHTGDLFDINDPPNKA 63
Query: 72 LVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131
+ AI L+R G+P I G+HD P
Sbjct: 64 EIVAIRELKRLK--------------------------------EAGIPFIVIAGDHDSP 91
Query: 132 AGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDER 191
+ IL +L+ + K +GEIT+Y + + N+ ER
Sbjct: 92 KKFTAIYPQKILEEFDLIKFLSKPD-TPYKLGEITIY-----------GISHVPNVAKER 139
Query: 192 LNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNA---INEHFLPRFLDF 248
L + ++PE ++ +IL+LHQ + P I LP+ +
Sbjct: 140 LKELLSR------LKPENKK--------SILLLHQGLKEVLPYEGAWQIQIDDLPKAFSY 185
Query: 249 VVWGHEH 255
GH H
Sbjct: 186 YALGHFH 192
>sp|Q9UZC9|MRE11_PYRAB DNA double-strand break repair protein Mre11 OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=mre11 PE=3 SV=2
Length = 415
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 33/112 (29%)
Query: 19 TDCHLGYMEKDEIRRHDSF-EAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIE 77
D HLGY + + +R + F +AFE+ I ++VDF+++ GDLF+ ++PS T+ A++
Sbjct: 9 ADVHLGYEQFNRSQRAEEFAKAFEDAIKICVDEKVDFIVIAGDLFNSSRPSPGTIKTAVK 68
Query: 78 ILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHD 129
IL Q+ D +PVF+I GNHD
Sbjct: 69 IL------------QIPRDN--------------------NIPVFAIEGNHD 88
>sp|D4GUK0|MRE11_HALVD DNA double-strand break repair protein Mre11 OS=Haloferax volcanii
(strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 /
NCIMB 2012 / VKM B-1768 / DS2) GN=mre11 PE=1 SV=1
Length = 441
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 121/332 (36%), Gaps = 98/332 (29%)
Query: 13 VRILVATDCHLGYME-KDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST 71
R++ D HLGY + RR D +AFE + + A +VD V+ GDL+H+ +P
Sbjct: 2 TRVIHTGDTHLGYQQYHSPERRQDFLDAFERVVADALDGDVDAVVHAGDLYHDRRPELPD 61
Query: 72 LVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131
L+ + LRR L+D G+P +I GNH+
Sbjct: 62 LLGTLAALRR--LDD------------------------------AGIPFLAIVGNHEST 89
Query: 132 AGVDNLSAVDILSACNLVNYFGK--MVLGGSGVGEITVYPILIRKGSTAVALYGLGNI-- 187
G L D+ L G+ V+GG VA YGL ++
Sbjct: 90 RGGQWL---DLFERLGLATRLGRDPHVVGG-------------------VAFYGLDHVPR 127
Query: 188 --RDE--------RLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAI 237
RDE +R H + P A +DW VL ++ V
Sbjct: 128 SRRDELDYQFDPVDADRAVLVAHGL--FTPFAH-----ADWETETVLAESNVD------- 173
Query: 238 NEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEI 297
D V+ G H + D E+ G +T GS+ S E P+ L+E
Sbjct: 174 --------FDAVLLGDNH--VPDTAELDGT--WVTYCGSTERASA--SERDPRGYNLVEF 219
Query: 298 KENQYRPTKIPLTSVRPFEYTEIILKDEADID 329
+ + L + RPF + E+ L + I+
Sbjct: 220 TPDAVDIRRRTLET-RPFAFVEVDLAGDEGIE 250
>sp|O58686|MRE11_PYRHO DNA double-strand break repair protein Mre11 OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=mre11 PE=3 SV=1
Length = 413
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 19 TDCHLGYMEKDEIRRHDSF-EAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIE 77
D HLGY + ++ +R + F F++ + ++ VDF+++ GDLF+ ++PS T+ AI+
Sbjct: 7 ADVHLGYEQFNKPQRAEEFANTFKKALEMCVKESVDFIIIAGDLFNSSRPSPGTIKTAIK 66
Query: 78 ILRRHCLNDRPV 89
+L+ N+ PV
Sbjct: 67 LLQIPKENNIPV 78
>sp|Q9HRW4|MRE11_HALSA DNA double-strand break repair protein Mre11 OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=mre11 PE=3 SV=1
Length = 387
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 13 VRILVATDCHLGYMEKDE-IRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST 71
R++ D HLGY + RR D +AF+ + + A + VD V+ GDL+H+ +P
Sbjct: 2 ARVIHTGDTHLGYQQYHAPQRRQDFLDAFDAVITDAIDEGVDAVVHAGDLYHDRQPGLRD 61
Query: 72 LVKAIEILRRHCLNDRPVQFQVV 94
++ I +LR L D + F V
Sbjct: 62 ILDTIALLR--PLQDADIPFLAV 82
>sp|Q9HLR7|MRE11_THEAC DNA double-strand break repair protein Mre11 OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=mre11 PE=3 SV=1
Length = 376
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 123/313 (39%), Gaps = 85/313 (27%)
Query: 19 TDCHLGY--MEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAI 76
+D H+GY + DE R D ++AF E IA + VDFV+ GDLF P +AI
Sbjct: 4 SDTHIGYRSLTLDE-REQDFYDAFHEAIDIALENSVDFVIHTGDLFDTWVPGN----RAI 58
Query: 77 EILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDN 136
R + +N +N +P+F I G+HD P
Sbjct: 59 REFRNAVMK-------------LNARN---------------IPIFVIFGDHDRPRRNGE 90
Query: 137 LSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRK-GSTAVALYGLGNIRDERLNRM 195
A + ++ G VLG Y +RK V + G+ N++
Sbjct: 91 -------PAAGIFDFMGVHVLGWDA------YEYAVRKFDGEDVLIGGISNMK------- 130
Query: 196 FQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHF-----------LPR 244
+M+ ++E + S+ NI ++NR+ + + AI+ F LP
Sbjct: 131 -------GYMKTRLKDEYKRSE--NIEEGYRNRILMSHQ-AIDPFFVPDQCEAKMDDLPM 180
Query: 245 FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATS--LIEGESKP-KHVLLLEIKENQ 301
++ GH H+ + +G ++ GS+ S I G K K V +++I +
Sbjct: 181 NFSYIAMGHLHDFM-----ERRIGPLISYAGSTEIKSENEINGYLKQGKGVNIVDISNGE 235
Query: 302 YRPTKIPLTSVRP 314
+I L SVRP
Sbjct: 236 VDLQRIRLKSVRP 248
>sp|Q9YFY8|MRE11_AERPE DNA double-strand break repair protein Mre11 OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=mre11 PE=3 SV=1
Length = 409
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 33/120 (27%)
Query: 14 RILVATDCHLGYMEKD-EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72
++L D HLG E RR D F +FE + A + D VL+ GDLF + K +
Sbjct: 3 KVLHVADVHLGARPYGLEERRDDIFRSFEFVVETALKDRPDAVLIAGDLFDKPKLPLRDV 62
Query: 73 VKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132
+A+E++R L D G+PV + HG HD P+
Sbjct: 63 KQAVELVR--ALTD------------------------------AGIPVLAAHGEHDTPS 90
>sp|Q97C75|MRE11_THEVO DNA double-strand break repair protein Mre11 OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=mre11 PE=3 SV=1
Length = 374
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 40/147 (27%)
Query: 13 VRILVATDCHLGYMEKD-EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST 71
VR L +D H+G E R D ++ F+E IA ++VDF++ GDLF P +
Sbjct: 2 VRFLHMSDTHIGAKSLTIEEREQDYYDTFQEAVEIAIDEKVDFIIHSGDLFDTWIPGNRS 61
Query: 72 LVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131
+ + + + LNDR + PVF + G+HD P
Sbjct: 62 MKVFRDAMMK--LNDRQI------------------------------PVFYVFGDHDRP 89
Query: 132 AGVDNLSAVDILSACNLVNYFGKMVLG 158
SA + ++ G +LG
Sbjct: 90 RRNSE-------SAAGIFDFLGLHILG 109
>sp|Q8NKQ0|MRE11_SULAC DNA double-strand break repair protein Mre11 OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=mre11 PE=3 SV=1
Length = 382
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 91/247 (36%), Gaps = 62/247 (25%)
Query: 13 VRILVATDCHLGYMEKD-EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST 71
+++L +D HLG + + E R D ++ F ++ IA + V V+ GDLF N P
Sbjct: 1 MQLLHISDTHLGKRQYNLESREKDVYDTFTQLIDIAINEHVKAVIHTGDLFDVNNPPNRA 60
Query: 72 LVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131
+ AI+ L+R L D +P I G+HD P
Sbjct: 61 KLHAIKELKR--LKDH------------------------------NIPFICIAGDHDSP 88
Query: 132 AGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDER 191
+ + IL NL+ K I R V +YG+ +I +
Sbjct: 89 KRKEEIYPQRILEEFNLIKILQK---------------IDNRVKLENVEVYGISHISNVS 133
Query: 192 LNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNA---INEHFLPRFLDF 248
+N + + V +PE ++ +IL+LHQ P I LP+
Sbjct: 134 VNDLKEQLSKV---KPETRK--------SILMLHQGIRTYLPYQGAWQIELSDLPKGFSL 182
Query: 249 VVWGHEH 255
GH H
Sbjct: 183 YAVGHLH 189
>sp|P62132|MRE11_NANEQ DNA double-strand break repair protein Mre11 OS=Nanoarchaeum
equitans (strain Kin4-M) GN=mre11 PE=3 SV=1
Length = 361
Score = 38.9 bits (89), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 90/405 (22%), Positives = 153/405 (37%), Gaps = 108/405 (26%)
Query: 15 ILVATDCHLG--YMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72
I +D HLG Y K E H S+ A +I + + D VL+GGD+F +NK S +
Sbjct: 2 IAFISDLHLGNIYANKKETEEH-SYNALAKIEEKLLEYQPDLVLVGGDIFDKNKVSGKEI 60
Query: 73 VKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132
I+ + + N N+G V SI GNHD
Sbjct: 61 GVFIDFINKMNKN------------------------------NIG--VVSISGNHDGKY 88
Query: 133 GVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERL 192
+ S + + Y +L SG+ Y + + +Y L N RD +
Sbjct: 89 WLKE-------SFDHAIPY----ILYKSGINPENGY-----EYYSFAGIY-LKNSRDWKT 131
Query: 193 NRMFQTPHAVQWM---------RPEAQEECQV-----SDWFNILVLHQNRVKTNPKNAIN 238
M + + + + PE E + SD+ IL++HQ+ P++
Sbjct: 132 LSMIEDKYDISIVGFSFYTKDRLPELYEYLSIIDREKSDY--ILLMHQSLKSLLPQDPAA 189
Query: 239 EHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIK 298
+ ++GH H + + +T P S+ SL E ++ L+
Sbjct: 190 IDLTIENYKYALFGHMHMKYYKDKII------VTPPPYSI--SLKEANTEKGFWLI---- 237
Query: 299 ENQYRPTKIPLTSVRPFEYTEIILKDEADIDPDDQNSIL--------EHLDKV------- 343
+P +P+ RPF I L + +I P ++N+IL +DK+
Sbjct: 238 --DKKPVFVPIEDSRPFIKMAIDLDNPIEIKP-NKNAILILDVYYRESQIDKLNLLKKTL 294
Query: 344 --------VRNLIERSSKKTVNRSELKLPLVR--IKVDYSGFMTI 378
+ +++ +SK V +SE K + + +K DY FM +
Sbjct: 295 SENFLYVKINPILKETSKIIVKKSENKEEIFKKYLKEDYDFFMEL 339
>sp|P23479|SBCD_BACSU Nuclease SbcCD subunit D OS=Bacillus subtilis (strain 168) GN=sbcD
PE=3 SV=5
Length = 391
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 34/141 (24%)
Query: 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72
+RIL D HLG + R + + +E+ +I + +++D +++ GD F P L
Sbjct: 1 MRILHTADWHLGKTLEGRSRLSEQADVLDELNTIVKDEQIDAIVMAGDAFDTVNP--PAL 58
Query: 73 VKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132
+ + L+DR + P+ I GNHD+P
Sbjct: 59 AEQLFYESLSALSDRGKR-----------------------------PIVVIAGNHDNP- 88
Query: 133 GVDNLSAVDILSACNLVNYFG 153
D LSA L+ N ++ G
Sbjct: 89 --DRLSAASPLTHENGIHLIG 107
>sp|P62131|MRE11_METMP DNA double-strand break repair protein Mre11 OS=Methanococcus
maripaludis (strain S2 / LL) GN=mre11 PE=3 SV=1
Length = 372
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 33/114 (28%)
Query: 19 TDCHLGYMEKD-EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIE 77
D HLGY + + + R +D +E+F E + DFV+ GDLF +P + + A+E
Sbjct: 7 ADNHLGYRQYNLDERENDIYESFLECIDKIIEIRPDFVIHSGDLFESPQPPVNAIRCAME 66
Query: 78 ILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131
L + L ++ +P++ IHGNHD P
Sbjct: 67 GLLK--LKEK------------------------------NIPIYLIHGNHDIP 88
>sp|Q8TXI3|MRE11_METKA DNA double-strand break repair protein Mre11 OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=mre11 PE=3 SV=1
Length = 451
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 13 VRILVATDCHLGYMEKDEIRRHDS-FEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST 71
+R+ D HLG+ + R ++ E FE + + VD +++ GDLF +P
Sbjct: 1 MRMAHVADVHLGHALMNLRSREEAVMETFERLMEEVRECSVDVLVIAGDLFEHARPKTEA 60
Query: 72 LVKAIEIL 79
L A+E L
Sbjct: 61 LYLAVEKL 68
>sp|Q929A8|ADDB_LISIN ATP-dependent helicase/deoxyribonuclease subunit B OS=Listeria
innocua serovar 6a (strain CLIP 11262) GN=addB PE=3 SV=1
Length = 1157
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 94/221 (42%), Gaps = 35/221 (15%)
Query: 201 AVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFVVWGHEHECLID 260
A++W+ E + + DW N L + + K A+ F+ +HE L+
Sbjct: 826 AMEWISAELKRTNR--DWGN---LTEEECRQMAKLAMT---------FLAPKIQHEILLS 871
Query: 261 PQEVPGMGFHLTQPGSSVATSLIE-GESKPKHVLLLEIK---ENQYRPTKIPLTSVRPFE 316
+ + + + L Q + T L E +S + LE+ + P KIPL S
Sbjct: 872 SKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPIGLEVDFGLKGDIPPLKIPLQSD---- 927
Query: 317 YTEIILKDEAD-IDPDDQNSILEHLDKVVRNLIE-RSSKKTVNRSELKLPLVRIKVDYSG 374
+E++L+ D ID +Q+ D+ +I+ +SS + +E+ L + Y
Sbjct: 928 -SELLLQGRIDRIDAAEQD------DRTFLRIIDYKSSSHDLALTEVYYGLALQMLTYLD 980
Query: 375 FMTINPQRFGQKYVGKVANPQDILIFSKSSKKSKAEAKIDD 415
+ N QK +GK A P +L F ++ +AE ++ D
Sbjct: 981 IVVTN----AQKMIGKTAEPAGVLYFHMHNQYVQAEKELSD 1017
>sp|Q9ZM43|YA44_HELPJ Uncharacterized metallophosphoesterase jhp_0380 OS=Helicobacter
pylori (strain J99) GN=jhp_0380 PE=3 SV=1
Length = 370
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 10/54 (18%)
Query: 13 VRILVATDCHLG-YMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHEN 65
++I++ TD H+G ++KD + I QKEVD VL+GGDL EN
Sbjct: 145 LKIILLTDMHVGSLLQKDFV---------NYIVEEVNQKEVDMVLIGGDLVDEN 189
>sp|Q10573|LIN25_CAEEL Protein lin-25 OS=Caenorhabditis elegans GN=lin-25 PE=1 SV=1
Length = 1139
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 17/123 (13%)
Query: 36 SFEAFEEICSIAEQKEVDFVLLGGDLFHE-NKPSRSTLVKAIEILRRHCLNDRPVQFQVV 94
S AF E I Q E L D F + P +S ++ RH +PV+FQ +
Sbjct: 184 SLLAFSEASEITHQLE-----LCRDSFSKLRSPDKSATTLVEMLIERHIEKCKPVKFQYI 238
Query: 95 SDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGK 154
+ F + ++P + +P+F+ NH+ L A I + ++ ++G
Sbjct: 239 PEGIALF-------DLKNPSIRILIPIFACFKNHES----SKLMAETIQTFAEIMRFYGP 287
Query: 155 MVL 157
V+
Sbjct: 288 DVI 290
>sp|B8DF43|ADDB_LISMH ATP-dependent helicase/deoxyribonuclease subunit B OS=Listeria
monocytogenes serotype 4a (strain HCC23) GN=addB PE=3
SV=1
Length = 1157
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 37/222 (16%)
Query: 201 AVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFVVWGHEHECLID 260
A++W+ E + DW N L + K K A+ F+ +HE L+
Sbjct: 826 AMEWISAELKRNNL--DWGN---LTEEECKQMAKLAMT---------FLAPKIQHEILLS 871
Query: 261 PQEVPGMGFHLTQPGSSVATSLIE-GESKPKHVLLLEIK---ENQYRPTKIPLTSVRPFE 316
+ + + + L Q + T L E +S + LE+ + P KIPL S
Sbjct: 872 SKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLKGDIPPLKIPLQSD---- 927
Query: 317 YTEIILK---DEADIDPDDQNSILEHLDKVVRNLIERSSKKTVNRSELKLPLVRIKVDYS 373
+E++L+ D D+ D + L +D +SS + +E+ L + Y
Sbjct: 928 -SELLLQGRIDRIDMAEQDDRTFLRIIDY-------KSSSHDLALTEVYYGLALQMLTYL 979
Query: 374 GFMTINPQRFGQKYVGKVANPQDILIFSKSSKKSKAEAKIDD 415
+ N QK +GK A P +L F ++ +AE ++ D
Sbjct: 980 DIVVTN----AQKMIGKTAEPAGVLYFHMHNQYVQAEKELSD 1017
>sp|Q8Y510|ADDB_LISMO ATP-dependent helicase/deoxyribonuclease subunit B OS=Listeria
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
GN=addB PE=3 SV=1
Length = 1157
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 37/222 (16%)
Query: 201 AVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFVVWGHEHECLID 260
A++W+ E + DW N L + K K A+ F+ +HE L+
Sbjct: 826 AMEWISAELKRNNL--DWGN---LTEEECKQMAKLAMT---------FLAPKIQHEILLS 871
Query: 261 PQEVPGMGFHLTQPGSSVATSLIE-GESKPKHVLLLEIK---ENQYRPTKIPLTSVRPFE 316
+ + + + L Q + T L E +S + LE+ + P KIPL S
Sbjct: 872 SKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLKGDIPPLKIPLQSD---- 927
Query: 317 YTEIILK---DEADIDPDDQNSILEHLDKVVRNLIERSSKKTVNRSELKLPLVRIKVDYS 373
+E++L+ D D+ D + L +D +SS + +E+ L + Y
Sbjct: 928 -SELLLQGRIDRIDMAEQDDRTFLRIIDY-------KSSSHDLALTEVYYGLALQMLTYL 979
Query: 374 GFMTINPQRFGQKYVGKVANPQDILIFSKSSKKSKAEAKIDD 415
+ N QK +GK A P +L F ++ +AE ++ D
Sbjct: 980 DIVVTN----AQKMIGKTAEPAGVLYFHMHNQYVQAEKELSD 1017
>sp|O25685|Y1044_HELPY Uncharacterized metallophosphoesterase HP_1044 OS=Helicobacter
pylori (strain ATCC 700392 / 26695) GN=HP_1044 PE=3 SV=1
Length = 370
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 10/54 (18%)
Query: 13 VRILVATDCHLG-YMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHEN 65
++I++ TD H+G ++KD + + I QKEVD VL+GGDL E+
Sbjct: 145 LKIILLTDMHVGSLLQKDFV---------DYIVEEVNQKEVDMVLIGGDLVDES 189
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,850,285
Number of Sequences: 539616
Number of extensions: 7508183
Number of successful extensions: 18365
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 18244
Number of HSP's gapped (non-prelim): 84
length of query: 447
length of database: 191,569,459
effective HSP length: 121
effective length of query: 326
effective length of database: 126,275,923
effective search space: 41165950898
effective search space used: 41165950898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)