Query 013207
Match_columns 447
No_of_seqs 365 out of 2213
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 01:29:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2310 DNA repair exonuclease 100.0 2E-110 4E-115 843.9 33.0 426 7-441 8-444 (646)
2 TIGR00583 mre11 DNA repair pro 100.0 5.2E-91 1.1E-95 713.1 37.8 387 10-405 1-405 (405)
3 PRK10966 exonuclease subunit S 100.0 8.7E-37 1.9E-41 315.0 22.7 261 13-322 1-292 (407)
4 COG0420 SbcD DNA repair exonuc 100.0 1.7E-35 3.6E-40 305.2 22.8 262 13-324 1-273 (390)
5 PHA02546 47 endonuclease subun 100.0 3.2E-32 6.9E-37 275.7 24.9 234 13-322 1-244 (340)
6 TIGR00619 sbcd exonuclease Sbc 100.0 1.6E-31 3.6E-36 260.0 18.8 227 13-291 1-253 (253)
7 cd00840 MPP_Mre11_N Mre11 nucl 100.0 5.1E-27 1.1E-31 222.3 21.0 215 14-283 1-223 (223)
8 PF04152 Mre11_DNA_bind: Mre11 99.9 4.1E-28 8.8E-33 223.1 10.4 134 302-435 1-153 (175)
9 cd07385 MPP_YkuE_C Bacillus su 99.8 3.3E-19 7.2E-24 169.4 17.2 170 12-261 1-170 (223)
10 PRK11340 phosphodiesterase Yae 99.8 8.4E-18 1.8E-22 165.4 18.1 171 9-260 46-217 (271)
11 PRK11148 cyclic 3',5'-adenosin 99.7 2.3E-16 5.1E-21 155.3 18.3 233 7-311 9-263 (275)
12 cd07402 MPP_GpdQ Enterobacter 99.7 3.4E-16 7.4E-21 150.3 10.9 199 14-279 1-212 (240)
13 cd07395 MPP_CSTP1 Homo sapiens 99.6 7.8E-15 1.7E-19 143.3 19.0 238 10-308 2-261 (262)
14 PF12850 Metallophos_2: Calcin 99.6 6.5E-16 1.4E-20 137.9 7.7 76 217-300 80-156 (156)
15 cd07400 MPP_YydB Bacillus subt 99.6 5.6E-15 1.2E-19 130.9 11.2 80 15-130 1-80 (144)
16 cd07388 MPP_Tt1561 Thermus the 99.6 1.6E-14 3.4E-19 137.9 14.5 201 11-301 3-220 (224)
17 PRK09453 phosphodiesterase; Pr 99.6 9.5E-14 2.1E-18 128.5 17.4 172 13-315 1-176 (182)
18 cd07394 MPP_Vps29 Homo sapiens 99.6 1.7E-13 3.6E-18 126.7 17.6 69 244-318 105-174 (178)
19 TIGR00040 yfcE phosphoesterase 99.6 5.9E-14 1.3E-18 126.8 14.0 52 244-303 105-156 (158)
20 cd07396 MPP_Nbla03831 Homo sap 99.6 1.8E-13 3.9E-18 134.3 18.1 87 13-134 1-89 (267)
21 cd00841 MPP_YfcE Escherichia c 99.5 1.5E-13 3.3E-18 123.3 14.4 79 219-306 76-154 (155)
22 cd07383 MPP_Dcr2 Saccharomyces 99.5 1.6E-13 3.6E-18 128.6 13.6 88 11-130 1-88 (199)
23 cd07392 MPP_PAE1087 Pyrobaculu 99.5 7.2E-14 1.6E-18 128.5 10.8 176 15-275 1-188 (188)
24 cd07393 MPP_DR1119 Deinococcus 99.5 4.2E-13 9.1E-18 129.1 16.2 187 15-259 1-207 (232)
25 COG2129 Predicted phosphoester 99.5 1.3E-12 2.9E-17 122.3 18.6 203 11-306 2-223 (226)
26 cd07401 MPP_TMEM62_N Homo sapi 99.5 1.2E-12 2.7E-17 127.7 16.3 47 15-67 2-49 (256)
27 PF00149 Metallophos: Calcineu 99.5 4.4E-14 9.6E-19 124.2 5.3 80 13-133 1-80 (200)
28 cd07399 MPP_YvnB Bacillus subt 99.5 2.7E-12 5.8E-17 122.0 17.1 80 13-129 1-80 (214)
29 TIGR03729 acc_ester putative p 99.4 1.8E-12 3.9E-17 125.1 12.5 74 14-131 1-74 (239)
30 PRK05340 UDP-2,3-diacylglucosa 99.4 4.2E-12 9.2E-17 122.8 15.1 81 13-132 1-84 (241)
31 COG1408 Predicted phosphohydro 99.4 2.6E-12 5.6E-17 126.9 13.8 93 9-147 41-134 (284)
32 COG0622 Predicted phosphoester 99.4 1.1E-11 2.4E-16 113.5 14.3 85 217-309 80-165 (172)
33 TIGR01854 lipid_A_lpxH UDP-2,3 99.3 1.5E-11 3.3E-16 118.1 11.3 78 15-132 1-82 (231)
34 cd00839 MPP_PAPs purple acid p 99.3 1.7E-10 3.7E-15 114.2 18.4 82 10-134 2-84 (294)
35 PF14582 Metallophos_3: Metall 99.3 3.9E-11 8.4E-16 112.4 12.7 228 12-305 5-253 (255)
36 cd07397 MPP_DevT Myxococcus xa 99.3 8E-11 1.7E-15 113.0 15.0 66 13-134 1-66 (238)
37 COG1409 Icc Predicted phosphoh 99.3 7.6E-11 1.6E-15 115.7 13.8 81 13-134 1-81 (301)
38 cd07378 MPP_ACP5 Homo sapiens 99.3 4.5E-10 9.7E-15 110.4 19.2 105 200-309 152-275 (277)
39 cd07404 MPP_MS158 Microscilla 99.2 9.8E-11 2.1E-15 106.4 8.9 68 15-131 1-68 (166)
40 cd00845 MPP_UshA_N_like Escher 99.1 9.7E-10 2.1E-14 106.6 15.0 212 13-276 1-223 (252)
41 cd07391 MPP_PF1019 Pyrococcus 99.1 1.4E-10 3.1E-15 106.3 7.8 84 16-132 1-89 (172)
42 cd07379 MPP_239FB Homo sapiens 99.1 4.5E-10 9.8E-15 98.7 10.1 47 14-81 1-47 (135)
43 cd07386 MPP_DNA_pol_II_small_a 99.1 1.3E-09 2.9E-14 105.4 12.8 43 16-65 2-49 (243)
44 PRK04036 DNA polymerase II sma 99.1 9.1E-09 2E-13 109.7 19.6 83 10-132 241-344 (504)
45 TIGR00024 SbcD_rel_arch putati 99.0 6.5E-10 1.4E-14 106.5 7.7 83 13-131 15-102 (225)
46 cd07410 MPP_CpdB_N Escherichia 99.0 1.2E-08 2.6E-13 100.6 16.9 216 13-276 1-246 (277)
47 KOG1432 Predicted DNA repair e 99.0 2.9E-08 6.4E-13 98.0 19.1 99 5-136 46-152 (379)
48 cd07406 MPP_CG11883_N Drosophi 99.0 1.3E-08 2.9E-13 99.4 16.5 211 13-276 1-222 (257)
49 cd07390 MPP_AQ1575 Aquifex aeo 99.0 4.3E-09 9.4E-14 96.2 12.2 77 16-132 2-83 (168)
50 cd07411 MPP_SoxB_N Thermus the 98.9 4.7E-08 1E-12 95.9 16.7 215 13-276 1-237 (264)
51 cd00842 MPP_ASMase acid sphing 98.9 1.7E-08 3.6E-13 100.4 12.9 66 34-132 49-123 (296)
52 PTZ00422 glideosome-associated 98.9 3E-07 6.5E-12 94.2 20.7 104 217-324 213-331 (394)
53 cd07408 MPP_SA0022_N Staphyloc 98.8 1.3E-07 2.7E-12 92.4 16.6 217 13-276 1-231 (257)
54 cd08165 MPP_MPPE1 human MPPE1 98.8 8.5E-09 1.9E-13 93.3 6.6 86 16-131 1-89 (156)
55 PLN02533 probable purple acid 98.8 5.1E-08 1.1E-12 102.0 13.3 75 10-131 137-211 (427)
56 cd07412 MPP_YhcR_N Bacillus su 98.8 2.6E-07 5.7E-12 91.8 17.5 52 13-65 1-56 (288)
57 cd08163 MPP_Cdc1 Saccharomyces 98.8 4.4E-08 9.5E-13 95.8 11.4 56 49-133 43-99 (257)
58 COG2908 Uncharacterized protei 98.7 2.5E-08 5.3E-13 94.7 7.0 80 16-134 1-83 (237)
59 cd07384 MPP_Cdc1_like Saccharo 98.7 3.4E-08 7.4E-13 90.7 7.5 91 16-132 1-101 (171)
60 cd07409 MPP_CD73_N CD73 ecto-5 98.7 4.2E-07 9E-12 90.0 14.4 199 13-258 1-219 (281)
61 cd07403 MPP_TTHA0053 Thermus t 98.6 7.6E-08 1.7E-12 84.2 7.7 33 16-62 1-33 (129)
62 cd08164 MPP_Ted1 Saccharomyces 98.5 3.6E-06 7.7E-11 78.6 15.2 42 40-81 32-74 (193)
63 KOG2679 Purple (tartrate-resis 98.5 3.5E-06 7.7E-11 81.0 15.2 255 9-310 40-318 (336)
64 COG1407 Predicted ICC-like pho 98.5 3.1E-07 6.8E-12 87.6 7.2 56 13-68 20-80 (235)
65 cd07398 MPP_YbbF-LpxH Escheric 98.5 2.8E-07 6.1E-12 87.0 7.0 44 16-65 1-44 (217)
66 PRK09419 bifunctional 2',3'-cy 98.5 2.1E-06 4.5E-11 100.4 15.0 47 10-65 658-705 (1163)
67 PHA02239 putative protein phos 98.5 5.1E-07 1.1E-11 87.1 8.4 53 13-77 1-55 (235)
68 cd07405 MPP_UshA_N Escherichia 98.4 1E-05 2.2E-10 80.4 17.4 51 13-65 1-56 (285)
69 cd00838 MPP_superfamily metall 98.4 8E-07 1.7E-11 75.3 7.0 69 16-129 1-69 (131)
70 PRK00166 apaH diadenosine tetr 98.2 2.7E-06 5.9E-11 83.9 7.2 67 13-130 1-68 (275)
71 cd08166 MPP_Cdc1_like_1 unchar 98.2 4.7E-06 1E-10 77.9 7.1 56 47-131 38-93 (195)
72 cd07425 MPP_Shelphs Shewanella 98.2 5.1E-06 1.1E-10 78.7 7.5 72 16-131 1-80 (208)
73 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.1 2.1E-05 4.5E-10 77.1 11.6 39 15-65 1-42 (262)
74 COG1311 HYS2 Archaeal DNA poly 98.1 1.1E-05 2.3E-10 83.7 9.4 51 7-64 220-275 (481)
75 COG0737 UshA 5'-nucleotidase/2 98.1 0.00035 7.5E-09 75.1 20.8 237 7-300 21-280 (517)
76 COG4186 Predicted phosphoester 98.1 4.4E-05 9.5E-10 67.9 11.2 67 11-82 2-72 (186)
77 COG1768 Predicted phosphohydro 98.1 2.8E-05 6E-10 70.7 10.0 41 217-257 158-199 (230)
78 cd07387 MPP_PolD2_C PolD2 (DNA 98.1 0.00023 5.1E-09 69.4 16.9 46 14-66 1-57 (257)
79 KOG3662 Cell division control 98.0 2.4E-05 5.1E-10 80.3 10.2 94 10-135 46-148 (410)
80 PRK09418 bifunctional 2',3'-cy 98.0 0.00018 3.9E-09 80.4 18.0 56 10-65 37-97 (780)
81 PRK09419 bifunctional 2',3'-cy 98.0 9.9E-05 2.1E-09 86.6 16.7 55 11-65 40-99 (1163)
82 PRK09420 cpdB bifunctional 2', 98.0 0.00036 7.7E-09 76.9 20.1 56 10-65 23-83 (649)
83 cd07423 MPP_PrpE Bacillus subt 98.0 1.6E-05 3.4E-10 76.7 7.1 54 13-82 1-64 (234)
84 cd07424 MPP_PrpA_PrpB PrpA and 98.0 1.6E-05 3.4E-10 75.1 6.8 44 13-68 1-45 (207)
85 TIGR01390 CycNucDiestase 2',3' 97.9 0.00033 7.2E-09 76.9 17.4 54 12-65 2-60 (626)
86 cd08162 MPP_PhoA_N Synechococc 97.9 0.00023 5E-09 71.7 14.6 47 13-65 1-52 (313)
87 cd07407 MPP_YHR202W_N Saccharo 97.9 0.00014 3E-09 72.2 12.6 56 217-276 188-247 (282)
88 PRK09558 ushA bifunctional UDP 97.9 0.00014 2.9E-09 78.9 13.5 55 9-65 31-90 (551)
89 PRK11907 bifunctional 2',3'-cy 97.9 0.00051 1.1E-08 77.0 18.2 55 11-65 114-173 (814)
90 TIGR01530 nadN NAD pyrophospha 97.9 0.00029 6.2E-09 76.4 15.5 53 13-65 1-63 (550)
91 cd00144 MPP_PPP_family phospho 97.8 3.3E-05 7.2E-10 73.3 6.3 68 17-132 2-69 (225)
92 cd07422 MPP_ApaH Escherichia c 97.8 5E-05 1.1E-09 74.3 6.7 65 16-131 2-67 (257)
93 PRK13625 bis(5'-nucleosyl)-tet 97.8 5.5E-05 1.2E-09 73.5 6.9 52 13-76 1-61 (245)
94 PRK11439 pphA serine/threonine 97.8 4.4E-05 9.6E-10 72.8 6.0 52 13-80 17-69 (218)
95 PRK09968 serine/threonine-spec 97.7 7.1E-05 1.5E-09 71.4 6.3 45 14-70 16-61 (218)
96 KOG1378 Purple acid phosphatas 97.7 0.00029 6.3E-09 73.0 11.0 80 9-133 144-223 (452)
97 TIGR00668 apaH bis(5'-nucleosy 97.6 0.00013 2.8E-09 71.8 6.8 53 13-81 1-54 (279)
98 cd07382 MPP_DR1281 Deinococcus 97.6 0.0086 1.9E-07 58.6 19.4 190 14-276 1-197 (255)
99 TIGR03767 P_acnes_RR metalloph 97.5 0.0011 2.4E-08 69.7 12.7 68 10-79 32-121 (496)
100 cd07413 MPP_PA3087 Pseudomonas 97.4 0.0003 6.5E-09 67.3 6.7 51 16-82 2-60 (222)
101 cd07421 MPP_Rhilphs Rhilph pho 97.3 0.00071 1.5E-08 67.0 8.3 52 14-81 3-60 (304)
102 TIGR00282 metallophosphoestera 97.1 0.033 7.2E-07 54.7 17.2 188 13-272 1-196 (266)
103 smart00156 PP2Ac Protein phosp 97.1 0.0013 2.8E-08 64.9 7.4 51 13-75 28-78 (271)
104 KOG3325 Membrane coat complex 97.1 0.0012 2.7E-08 58.3 5.9 80 217-302 78-161 (183)
105 cd07416 MPP_PP2B PP2B, metallo 96.8 0.0033 7.2E-08 63.1 7.7 49 13-73 43-91 (305)
106 PF04042 DNA_pol_E_B: DNA poly 96.7 0.00099 2.2E-08 62.7 2.9 47 15-68 1-48 (209)
107 cd07415 MPP_PP2A_PP4_PP6 PP2A, 96.5 0.0054 1.2E-07 61.0 6.5 48 14-73 43-90 (285)
108 cd07414 MPP_PP1_PPKL PP1, PPKL 96.5 0.0064 1.4E-07 60.7 6.8 48 14-73 51-98 (293)
109 PF09587 PGA_cap: Bacterial ca 96.5 0.048 1E-06 53.0 12.8 216 14-283 1-244 (250)
110 KOG3770 Acid sphingomyelinase 96.4 0.014 2.9E-07 62.4 9.4 87 11-131 137-263 (577)
111 PTZ00480 serine/threonine-prot 96.4 0.0069 1.5E-07 61.0 6.4 47 14-72 60-106 (320)
112 cd07381 MPP_CapA CapA and rela 96.3 0.037 7.9E-07 53.3 10.6 143 117-283 76-235 (239)
113 PTZ00239 serine/threonine prot 96.1 0.012 2.7E-07 58.9 6.5 48 14-73 44-91 (303)
114 PTZ00244 serine/threonine-prot 96.0 0.012 2.7E-07 58.7 5.9 46 15-72 54-99 (294)
115 smart00854 PGA_cap Bacterial c 95.9 0.068 1.5E-06 51.5 10.6 143 117-283 72-233 (239)
116 cd07418 MPP_PP7 PP7, metalloph 95.9 0.021 4.5E-07 58.8 7.1 48 14-73 67-115 (377)
117 cd07420 MPP_RdgC Drosophila me 95.9 0.022 4.8E-07 57.5 7.1 49 13-73 51-100 (321)
118 cd07417 MPP_PP5_C PP5, C-termi 95.8 0.02 4.3E-07 57.7 6.5 51 13-75 60-111 (316)
119 cd07419 MPP_Bsu1_C Arabidopsis 95.6 0.031 6.7E-07 56.3 7.2 48 14-73 49-104 (311)
120 cd07380 MPP_CWF19_N Schizosacc 95.1 0.053 1.2E-06 48.7 6.2 46 48-129 23-68 (150)
121 TIGR03768 RPA4764 metallophosp 94.4 0.21 4.6E-06 52.5 9.4 111 6-132 30-171 (492)
122 KOG2863 RNA lariat debranching 93.9 0.22 4.7E-06 50.4 7.9 38 13-62 1-41 (456)
123 KOG0373 Serine/threonine speci 85.9 1.9 4E-05 41.0 5.9 55 15-81 48-102 (306)
124 PTZ00235 DNA polymerase epsilo 83.8 4.6 0.0001 40.2 7.9 48 10-65 25-77 (291)
125 KOG0372 Serine/threonine speci 83.7 2.4 5.1E-05 41.1 5.6 47 15-73 45-91 (303)
126 PF06874 FBPase_2: Firmicute f 81.3 1.8 3.8E-05 47.1 4.2 38 41-82 174-211 (640)
127 KOG3947 Phosphoesterases [Gene 80.3 19 0.00042 35.5 10.6 40 9-66 58-97 (305)
128 KOG2476 Uncharacterized conser 78.9 11 0.00024 39.7 8.9 45 13-68 6-51 (528)
129 TIGR01769 GGGP geranylgeranylg 76.9 10 0.00022 35.9 7.5 58 38-133 11-68 (205)
130 PF09423 PhoD: PhoD-like phosp 70.5 5.5 0.00012 42.1 4.5 44 10-65 103-146 (453)
131 KOG0374 Serine/threonine speci 69.8 6.2 0.00014 40.1 4.5 74 14-134 60-134 (331)
132 cd07398 MPP_YbbF-LpxH Escheric 68.4 3.7 8.1E-05 38.2 2.5 30 243-276 187-216 (217)
133 COG1646 Predicted phosphate-bi 66.3 23 0.00049 34.2 7.1 56 40-133 30-85 (240)
134 TIGR01768 GGGP-family geranylg 64.7 21 0.00045 34.3 6.7 55 40-133 16-70 (223)
135 COG3855 Fbp Uncharacterized pr 62.0 11 0.00023 39.7 4.4 34 45-82 184-217 (648)
136 PF01884 PcrB: PcrB family; I 61.0 20 0.00044 34.5 5.9 53 41-133 22-74 (230)
137 PRK09982 universal stress prot 57.2 26 0.00055 30.4 5.6 19 40-58 92-110 (142)
138 PRK15005 universal stress prot 53.9 31 0.00068 29.5 5.6 19 40-58 96-114 (144)
139 KOG4419 5' nucleotidase [Nucle 53.8 25 0.00054 38.2 5.6 58 10-67 40-103 (602)
140 KOG0371 Serine/threonine prote 51.3 27 0.00058 34.3 4.9 45 15-72 62-107 (319)
141 cd00838 MPP_superfamily metall 48.1 19 0.00042 29.4 3.2 39 221-259 70-117 (131)
142 TIGR03768 RPA4764 metallophosp 47.7 78 0.0017 33.8 8.0 16 245-260 399-414 (492)
143 PF00072 Response_reg: Respons 47.5 73 0.0016 25.4 6.5 52 40-130 32-83 (112)
144 PF10686 DUF2493: Protein of u 47.3 57 0.0012 25.3 5.4 39 11-60 2-40 (71)
145 TIGR02667 moaB_proteo molybden 47.3 82 0.0018 28.5 7.3 31 34-64 45-76 (163)
146 TIGR01501 MthylAspMutase methy 47.2 80 0.0017 27.8 6.9 40 39-82 40-79 (134)
147 PRK04169 geranylgeranylglycery 47.1 54 0.0012 31.7 6.3 49 45-133 26-75 (232)
148 cd02812 PcrB_like PcrB_like pr 46.4 60 0.0013 31.1 6.5 56 40-133 14-69 (219)
149 cd02072 Glm_B12_BD B12 binding 45.2 1.5E+02 0.0032 25.9 8.2 40 39-82 38-77 (128)
150 cd02067 B12-binding B12 bindin 44.2 92 0.002 26.0 6.8 39 39-81 38-76 (119)
151 TIGR00640 acid_CoA_mut_C methy 42.1 86 0.0019 27.4 6.4 40 38-81 40-79 (132)
152 cd00886 MogA_MoaB MogA_MoaB fa 41.1 1.8E+02 0.0039 25.7 8.5 40 35-74 44-85 (152)
153 PF00582 Usp: Universal stress 41.0 87 0.0019 25.5 6.2 23 39-61 90-112 (140)
154 cd02071 MM_CoA_mut_B12_BD meth 39.7 1E+02 0.0022 26.2 6.4 39 39-81 38-76 (122)
155 COG1692 Calcineurin-like phosp 39.0 3.9E+02 0.0084 26.2 17.8 44 13-66 1-45 (266)
156 PRK10116 universal stress prot 38.6 88 0.0019 26.6 6.0 20 40-59 91-110 (142)
157 PRK09968 serine/threonine-spec 37.0 29 0.00062 32.9 2.8 30 245-278 179-208 (218)
158 cd03770 SR_TndX_transposase Se 36.7 1.4E+02 0.0031 25.9 7.0 60 37-132 54-113 (140)
159 COG2248 Predicted hydrolase (m 36.4 48 0.001 32.5 4.1 59 11-83 175-235 (304)
160 TIGR02855 spore_yabG sporulati 36.2 39 0.00084 33.4 3.5 69 41-109 143-230 (283)
161 PF07355 GRDB: Glycine/sarcosi 36.2 1.3E+02 0.0028 30.8 7.4 53 9-71 47-99 (349)
162 KOG3818 DNA polymerase epsilon 35.9 1.4E+02 0.003 31.6 7.5 90 13-134 283-372 (525)
163 PF07451 SpoVAD: Stage V sporu 35.7 31 0.00067 34.7 2.8 21 49-70 70-90 (329)
164 KOG0375 Serine-threonine phosp 34.9 68 0.0015 32.9 5.0 46 15-72 90-135 (517)
165 TIGR03568 NeuC_NnaA UDP-N-acet 33.9 58 0.0013 33.3 4.7 26 38-63 80-105 (365)
166 TIGR01319 glmL_fam conserved h 33.6 88 0.0019 33.3 5.9 64 47-152 116-179 (463)
167 cd07424 MPP_PrpA_PrpB PrpA and 32.6 36 0.00078 31.7 2.6 30 245-278 168-197 (207)
168 PRK11475 DNA-binding transcrip 32.3 1.1E+02 0.0023 28.8 5.8 33 38-72 24-56 (207)
169 PF05582 Peptidase_U57: YabG p 29.6 60 0.0013 32.2 3.6 68 41-108 144-230 (287)
170 cd03786 GT1_UDP-GlcNAc_2-Epime 29.2 1E+02 0.0022 30.7 5.4 26 37-62 74-99 (363)
171 cd07389 MPP_PhoD Bacillus subt 28.4 1.3E+02 0.0028 28.1 5.8 19 117-135 88-106 (228)
172 PRK02261 methylaspartate mutas 27.7 2.4E+02 0.0053 24.6 6.9 39 39-81 42-80 (137)
173 TIGR01917 gly_red_sel_B glycin 27.5 1.6E+02 0.0036 30.9 6.5 53 8-70 42-94 (431)
174 PF03465 eRF1_3: eRF1 domain 3 27.3 44 0.00096 28.3 2.1 28 40-67 26-53 (113)
175 PF14639 YqgF: Holliday-juncti 25.3 3.6E+02 0.0078 24.0 7.6 21 39-59 51-71 (150)
176 PRK01018 50S ribosomal protein 24.2 1.6E+02 0.0036 24.2 4.9 22 40-61 21-42 (99)
177 PF13727 CoA_binding_3: CoA-bi 24.1 1.3E+02 0.0029 26.2 4.8 39 37-80 127-165 (175)
178 TIGR01918 various_sel_PB selen 23.9 2.7E+02 0.0058 29.4 7.3 52 9-70 43-94 (431)
179 PF02350 Epimerase_2: UDP-N-ac 23.6 2E+02 0.0043 29.3 6.4 26 38-63 54-79 (346)
180 PRK14039 ADP-dependent glucoki 23.3 2.3E+02 0.0049 30.3 6.8 58 14-82 182-246 (453)
181 cd03413 CbiK_C Anaerobic cobal 23.2 45 0.00097 27.8 1.3 30 118-148 61-93 (103)
182 PF13481 AAA_25: AAA domain; P 22.9 1.5E+02 0.0032 26.7 4.9 46 38-83 127-175 (193)
183 PF01248 Ribosomal_L7Ae: Ribos 21.3 1.5E+02 0.0032 23.8 4.0 25 40-64 20-44 (95)
184 cd04502 SGNH_hydrolase_like_7 21.1 4.3E+02 0.0092 23.1 7.4 50 15-64 2-66 (171)
185 PF05902 4_1_CTD: 4.1 protein 21.0 1.8E+02 0.0038 24.9 4.4 33 13-56 71-103 (114)
186 cd00019 AP2Ec AP endonuclease 20.9 3.6E+02 0.0077 26.0 7.4 70 12-83 59-129 (279)
187 TIGR03395 sphingomy sphingomye 20.5 1.1E+02 0.0023 30.4 3.5 51 14-64 133-189 (283)
188 PRK06512 thiamine-phosphate py 20.5 1.4E+02 0.0029 28.5 4.2 21 46-67 126-146 (221)
189 TIGR00236 wecB UDP-N-acetylglu 20.4 3.2E+02 0.0068 27.4 7.1 26 37-62 72-97 (365)
No 1
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=100.00 E-value=1.9e-110 Score=843.92 Aligned_cols=426 Identities=59% Similarity=0.975 Sum_probs=401.2
Q ss_pred CCCCCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCC
Q 013207 7 EDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLND 86 (447)
Q Consensus 7 ~~~~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~ 86 (447)
++-+++||||++||+||||.++++.|++|+|.+|+||+.+|++++||+||++|||||.++||+.++++|+++||+||+||
T Consensus 8 ~D~entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgd 87 (646)
T KOG2310|consen 8 DDFENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGD 87 (646)
T ss_pred cccccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCC
Confidence 33478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeechhhhcccc-cccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCccee
Q 013207 87 RPVQFQVVSDQAVNFQN-KFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEI 165 (447)
Q Consensus 87 ~~~~~~~lsd~~~~f~~-~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i 165 (447)
+||+||+||||+++|.+ .|+.|||+|||++++||||.||||||+|++.+.+|++|+|+.+|+|||||+. ..+++|
T Consensus 88 kP~~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG~~~lsalDIL~~~GLVNyFGk~----~~id~I 163 (646)
T KOG2310|consen 88 KPVQLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSGDGRLSALDILSAAGLVNYFGKV----SEIDKI 163 (646)
T ss_pred CceeeEEecccceeccccccceecccCCCcceeeeeEEeecCCCCCccccccchHHHHHhcchhhhhccc----cCcceE
Confidence 99999999999999986 5999999999999999999999999999999999999999999999999997 678899
Q ss_pred EEEEEEEecCCeeEEEEecCCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCCCcccccccccC
Q 013207 166 TVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRF 245 (447)
Q Consensus 166 ~~~Pi~l~~g~~~vaiyGl~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~i~~~~~~~~ 245 (447)
.+.||+++||.+++||||+|+++|+||.++|.+ .+|.|++|...+ ++|||+|++|||+..+++.+++|++++|.+
T Consensus 164 ~vsPiLlqKG~tklALYGLg~irDeRL~R~Fk~-~~V~f~rPe~~e----~dWFNllvlHQNr~~h~~tn~lpE~flp~F 238 (646)
T KOG2310|consen 164 DVSPILLQKGSTKLALYGLGSIRDERLYRMFKN-GKVTFLRPEEYE----DDWFNLLVLHQNRSKHRPTNFLPEQFLPDF 238 (646)
T ss_pred EEEeeeeccCceeEEEeeccccchHHHHHHHHh-CceEEecCcccc----ccceeeEEEeecccCCCCcccCcHhHhhhh
Confidence 999999999999999999999999999999998 899999998643 489999999999999999999999999999
Q ss_pred CcEEEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEEEEeCCeeEEEEEECCCCCcEEEEEEEeccc
Q 013207 246 LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIILKDE 325 (447)
Q Consensus 246 ~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~~~~~~~~~i~L~~~Rpf~~~~i~l~~~ 325 (447)
+|+|+|||+|+|.+.|+..+.++|+|.||||+++||++++|+.+|+|+|++|.|++++.++|||.++|||.+.++.|++.
T Consensus 239 ~DlviWGHEHEC~i~p~~n~~~~F~i~QPGSsVaTSL~~gEa~~Khv~lL~Ikg~~~~l~~IpL~TVRpf~~~~ivL~d~ 318 (646)
T KOG2310|consen 239 LDLVIWGHEHECKIDPQYNAIQGFYILQPGSSVATSLSPGEAKPKHVGLLRIKGRKFKLEKIPLRTVRPFVMDDIVLADH 318 (646)
T ss_pred hhheeeccccccccCcccccccceeeecCCCccccccCcccccCceEEEEEecCCcccccccccceecceeeeeeEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC----CCCCCHhHHHHHHHHHHHHHHHHhhhccccCC-CccCceeEEEEeecC-CcccCccchhhhhhhccCCCcceEE
Q 013207 326 AD----IDPDDQNSILEHLDKVVRNLIERSSKKTVNRS-ELKLPLVRIKVDYSG-FMTINPQRFGQKYVGKVANPQDILI 399 (447)
Q Consensus 326 ~~----~~~~~~~~~~~~l~~~v~~~i~~~~~~~~~~~-~~~~pl~rlrv~~~~-~~~~~~~~~~~~~~~~vanp~d~~~ 399 (447)
++ +.|...+.+.+++.++|++||+++..+..+++ +|++|||||||+|+| ++++||+|||++|+||||||+||++
T Consensus 319 ~~~~~~i~p~~~~~i~~~~~e~veemI~~A~~q~~~~~~~p~lPLIRLrVdYsg~~~~~n~~RFs~rfvgrVAN~~Dvv~ 398 (646)
T KOG2310|consen 319 PDILNPIRPKVTDGILSFLIEKVEEMIETAEAQRLGRSGQPELPLIRLRVDYSGDFEPFNPQRFSQRFVGRVANPQDVVQ 398 (646)
T ss_pred CccccCCCcchhhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEecCCccccCHHHHhHhhhhcccChhheEE
Confidence 77 78888889999999999999999987766665 699999999999997 8999999999999999999999999
Q ss_pred EeeeccccccccccCcccccCccccccccHHHHHhc----CCcccc
Q 013207 400 FSKSSKKSKAEAKIDDFERLRPEELNQQNIEALVAE----NNLVLH 441 (447)
Q Consensus 400 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 441 (447)
|+|++++.+.+......+..++++..+.+||+||.+ +|..|.
T Consensus 399 f~k~~kk~rte~~~~~t~~~~~~e~~~~~ve~Lvn~y~~~~n~ql~ 444 (646)
T KOG2310|consen 399 FSKKRKKTRTEEVNNGTEALRPEEGNQLRVETLVNQYTAESNVQLS 444 (646)
T ss_pred EeecccccccccccccchhccccccchhhHHHHHhhhhhcccccee
Confidence 999988555555566667778999999999999954 565543
No 2
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=100.00 E-value=5.2e-91 Score=713.07 Aligned_cols=387 Identities=49% Similarity=0.891 Sum_probs=354.8
Q ss_pred CCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCc
Q 013207 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPV 89 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~ 89 (447)
+++|||||+||||||+.+.++.|++|++.+|++++++|++++||+||++|||||.+.||.+++.+++++|++||+||+||
T Consensus 1 ~~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~ 80 (405)
T TIGR00583 1 EDTIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPC 80 (405)
T ss_pred CCceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCcc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeechhhhcccc-cccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcceeEEE
Q 013207 90 QFQVVSDQAVNFQN-KFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVY 168 (447)
Q Consensus 90 ~~~~lsd~~~~f~~-~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~~ 168 (447)
+|++|||++.+|.. .|+++||+|+|++.++|||+|+||||+|.+.+.++++++|+.+|++++||+. ...+++.+.
T Consensus 81 ~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~~~~~~~~l~lL~~~Glvnifgk~----~~~~~i~~~ 156 (405)
T TIGR00583 81 ELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPSGDGLLCALDLLHATGLVNYFGKV----PEIDNIIVS 156 (405)
T ss_pred chhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCccccccccHHHHHHhCCCEEEeccc----cccccceee
Confidence 99999999999984 8999999999999999999999999999987767899999999999999986 345678889
Q ss_pred EEEEecCCeeEEEEecCCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCCCcccccccccCCcE
Q 013207 169 PILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDF 248 (447)
Q Consensus 169 Pi~l~~g~~~vaiyGl~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~i~~~~~~~~~D~ 248 (447)
|+++++|++++++||+||++++++.++|.+ +++.+++|... ..+||||+++||++.+++..+++++++++.++||
T Consensus 157 Pvll~kg~~~valyGl~~~~d~rl~~~f~~-~~v~~~~p~~~----~~~~fnIlv~Hq~~~~~~~~~~ipe~llp~~fDY 231 (405)
T TIGR00583 157 PILLQKGETKLALYGISNVRDERLVRTFKD-NKVSFLRPNAG----AEDWFNLLVLHQNHAAHTSTSFLPESFIPDFFDL 231 (405)
T ss_pred eEEEecCCeeEEEecCCCCCHHHHHHHhhc-cchhhhccccC----CCCceEEEEeCceecCCCCcccCchhhhhccCcE
Confidence 999999999999999999999999999987 67888877532 2479999999999988777788999999999999
Q ss_pred EEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEEEEeCCeeEEEEEECCCCCcEEEEEEEecccCCC
Q 013207 249 VVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIILKDEADI 328 (447)
Q Consensus 249 v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~~~~~~~~~i~L~~~Rpf~~~~i~l~~~~~~ 328 (447)
|||||+|+|++.|+..+.++++|+|||||+++||+|+|..+|||++|+|+++++++++|||+++|||++.+++|++..++
T Consensus 232 ValGHiH~~~~~p~~~~~~~~~V~ypGS~v~tSf~e~E~~~Kgv~lVeI~~~~~~~~~IpL~~vRpf~~~~i~l~~~~~~ 311 (405)
T TIGR00583 232 VIWGHEHECLPDPVYNPSDGFYVLQPGSTVATSLTPGEALPKHVFILNIKGRKFASKPIPLQTVRPFVMKEILLDKVPGS 311 (405)
T ss_pred EEecccccccccccccCCCCceEEECCCcccccccccccCCCEEEEEEEcCCeeEEEEeeCCCcccEEEEEEEhhhcccc
Confidence 99999999999887766667899999999999999988999999999999988999999999999999999999998555
Q ss_pred CC----CCHhHHHHHHHHHHHHHHHHhhhcccc---------CCCccCceeEEEEeecC----CcccCccchhhhhhhcc
Q 013207 329 DP----DDQNSILEHLDKVVRNLIERSSKKTVN---------RSELKLPLVRIKVDYSG----FMTINPQRFGQKYVGKV 391 (447)
Q Consensus 329 ~~----~~~~~~~~~l~~~v~~~i~~~~~~~~~---------~~~~~~pl~rlrv~~~~----~~~~~~~~~~~~~~~~v 391 (447)
.+ ++.+++.++|.+.|++||++++.++.. ..++++||+||||+|+| ++++||+|||++|+|||
T Consensus 312 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~plirl~v~~~~~~~~~~~~n~~rf~~~~~~~v 391 (405)
T TIGR00583 312 RPILKTDNKKETDKRLIDEVEEMINEANAEWKAKRADGEGDEPREPPLPLIRLKVDYTGPWLNYQVENPKRFSNRFVGRV 391 (405)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCceEEEEEEecCCCCCccccChhHHhhhhcccc
Confidence 43 557789999999999999998765422 24789999999999985 89999999999999999
Q ss_pred CCCcceEEEeeecc
Q 013207 392 ANPQDILIFSKSSK 405 (447)
Q Consensus 392 anp~d~~~f~~~~~ 405 (447)
|||+||++|+|||+
T Consensus 392 an~~d~~~~~~~~~ 405 (405)
T TIGR00583 392 ANANDVVQFYKNNK 405 (405)
T ss_pred cChhHeEEEEecCC
Confidence 99999999999875
No 3
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=100.00 E-value=8.7e-37 Score=315.01 Aligned_cols=261 Identities=20% Similarity=0.270 Sum_probs=188.0
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCccee
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~ 92 (447)
|||+|+||||||....+..+..+....++++++.+.+++||+||++||+||...|+..+.....+++.++.
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~--------- 71 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQ--------- 71 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHH---------
Confidence 89999999999988777777777778889999999999999999999999999888765433334445432
Q ss_pred eechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcceeEEEEEEE
Q 013207 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILI 172 (447)
Q Consensus 93 ~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~~Pi~l 172 (447)
..++|||+|+||||.+.+.. ...++|...|+ .+++... ......|+.+
T Consensus 72 -----------------------~~~~~v~~I~GNHD~~~~l~--~~~~~l~~~gi-~vl~~~~------~~~~~~~v~l 119 (407)
T PRK10966 72 -----------------------QTGCQLVVLAGNHDSVATLN--ESRDLLAFLNT-TVIASAS------DDLGHQVIIL 119 (407)
T ss_pred -----------------------hcCCcEEEEcCCCCChhhhh--hHHHHHHHCCc-EEEeccc------ccCCcceEEE
Confidence 34789999999999987754 45678888775 4555421 1123346777
Q ss_pred ec--CCeeEEEEecCCCChHHHHhhhcCh----------hHHhh-ccch------hhhhccccCceeEEEeecccccC--
Q 013207 173 RK--GSTAVALYGLGNIRDERLNRMFQTP----------HAVQW-MRPE------AQEECQVSDWFNILVLHQNRVKT-- 231 (447)
Q Consensus 173 ~~--g~~~vaiyGl~~~~~~~l~~~~~~~----------~~v~~-l~p~------~~~~~~~~~~~~Ill~H~~~~~~-- 231 (447)
.. |...+.+|++||.++..+...+... ..+.. .... ..... .++.++|+|+|+.+.|.
T Consensus 120 ~~~~g~~~~~i~~lPy~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~I~~aH~~v~g~~~ 198 (407)
T PRK10966 120 PRRDGTPGAVLCAIPFLRPRDVITSQAGQSGIEKQQALQAAIADHYQQLYQLACELRDEL-GQPLPIIATGHLTTVGASK 198 (407)
T ss_pred ecCCCCeeeEEEECCCCCHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCcEEEEEeEEEcCCcc
Confidence 54 3345679999999987765443110 01110 0000 00000 12578999999988653
Q ss_pred ---------CCCCcccccccccCCcEEEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEEEEeCCe-
Q 013207 232 ---------NPKNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQ- 301 (447)
Q Consensus 232 ---------~~~~~i~~~~~~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~~~~- 301 (447)
|+...++.+.++. +||||+||+|++| .+. +...++|||||+++||+|. ..+|||++|+++.++
T Consensus 199 ~~sEr~~~vGg~~~v~~~~f~~-~dYvALGHlH~~Q----~v~-~~~~vrYsGSpl~~sFsE~-~~~K~v~lVel~~~~~ 271 (407)
T PRK10966 199 SDSVRDIYIGTLDAFPAQAFPP-ADYIALGHIHRAQ----KVG-GTEHIRYSGSPIPLSFDEL-GKSKSVHLVEFDQGKL 271 (407)
T ss_pred cCCeeEeeecCCceecHHHCCc-cCeeeccccccCc----CCC-CCCcEEEcCCCCCCCcccc-CCCCeEEEEEEcCCcc
Confidence 2223455667775 8999999999964 453 3467999999999999985 678999999998765
Q ss_pred eEEEEEECCCCCcEEEEEEEe
Q 013207 302 YRPTKIPLTSVRPFEYTEIIL 322 (447)
Q Consensus 302 ~~~~~i~L~~~Rpf~~~~i~l 322 (447)
..+++|||++.||+..+++++
T Consensus 272 ~~v~~i~l~~~~~l~~~~g~~ 292 (407)
T PRK10966 272 QSVTPLPVPVFQPMAVLKGDL 292 (407)
T ss_pred ceEEEEECCCCceeEEecCCH
Confidence 789999999999988766544
No 4
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.7e-35 Score=305.20 Aligned_cols=262 Identities=31% Similarity=0.454 Sum_probs=185.5
Q ss_pred eEEEEEcCCCCC-CCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcce
Q 013207 13 VRILVATDCHLG-YMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (447)
Q Consensus 13 mrILh~SD~HLG-~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~ 91 (447)
|||||+|||||| +..+++.|.+|++.+|+++++.|++++||+||+||||||+++|+.+++.++++.|+++|
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~-------- 72 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLK-------- 72 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhc--------
Confidence 899999999999 67788999999999999999999999999999999999999999999999999999986
Q ss_pred eeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcceeEEEEEE
Q 013207 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (447)
Q Consensus 92 ~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~~Pi~ 171 (447)
..+||||+|+||||.+.+.+..+.+.++...+++...+. .........+...|.+
T Consensus 73 ------------------------~~~Ipv~~I~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l 127 (390)
T COG0420 73 ------------------------DAGIPVVVIAGNHDSPSRLSEASPLLLLNNLGLHGVVGR-LVHEIRPPEIVAAPWL 127 (390)
T ss_pred ------------------------cCCCcEEEecCCCCchhccccccchHHHHcCCceeeccc-ceecccccchhcceee
Confidence 468999999999999999875555555677776655552 0000000011134566
Q ss_pred EecCCeeEE-EEecCCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeeccccc--CCCCC--cc-c--ccccc
Q 013207 172 IRKGSTAVA-LYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVK--TNPKN--AI-N--EHFLP 243 (447)
Q Consensus 172 l~~g~~~va-iyGl~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~--~~~~~--~i-~--~~~~~ 243 (447)
+......+. ++|..+............ .....+. ..+.++|+++|+.... .+... .+ . -+.++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (390)
T COG0420 128 IPGPDPDVVFFLGLNGLEKEQFELLLHK-GLLSALD--------PDDDPSILVLHQSIDALTSGAERDLALGTVDLSLLP 198 (390)
T ss_pred eccCCCcceeeeccCCchHHHHHHHHhH-hHHhhcC--------CccCceeeehhhhhcccccCCccceEEccccccccc
Confidence 654344444 888887766544322200 0011111 1146899999997541 11111 11 1 24566
Q ss_pred cC-CcEEEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEEEEeCCe-eEEEEEECCCCCcEEEEEEE
Q 013207 244 RF-LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQ-YRPTKIPLTSVRPFEYTEII 321 (447)
Q Consensus 244 ~~-~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~~~~-~~~~~i~L~~~Rpf~~~~i~ 321 (447)
.+ +||||+||+|.++.. ......|+||||+.+++|+|. +..|++.+|+++++. +.++.+++ +++....+.
T Consensus 199 ~~~~~YvALGHiH~~~~~----~~~~~~i~y~GS~~~~~f~E~-~~~k~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~ 270 (390)
T COG0420 199 KGGFDYVALGHIHKRQVI----PKEDPPIVYPGSPERYSFGEE-GERKGVVLVEFSGGKLWRFEELFV---PLFERLEVD 270 (390)
T ss_pred CCCcceEEcCCccccccc----CCCCCceecCCCceecchhHc-CCcccEEEEEecCCceeeeccccc---cccCceEEE
Confidence 66 999999999997654 332246889999999999985 788999999999885 44555544 445555555
Q ss_pred ecc
Q 013207 322 LKD 324 (447)
Q Consensus 322 l~~ 324 (447)
...
T Consensus 271 ~~~ 273 (390)
T COG0420 271 VLN 273 (390)
T ss_pred Eee
Confidence 544
No 5
>PHA02546 47 endonuclease subunit; Provisional
Probab=100.00 E-value=3.2e-32 Score=275.74 Aligned_cols=234 Identities=15% Similarity=0.161 Sum_probs=166.0
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC-CCHHHHHHHHH-HHHHhhcCCCCcc
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENK-PSRSTLVKAIE-ILRRHCLNDRPVQ 90 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~-ps~~~l~~~~~-~L~~l~~~~~~~~ 90 (447)
|||+|+||||||....++.+.++...+|++++++|++++||+||++||+||... ++..++..+.+ +++++.
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~------- 73 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLK------- 73 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHH-------
Confidence 899999999999887777777778899999999999999999999999999974 44444333333 344331
Q ss_pred eeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCC--cchhhhhhhcCCceEEecceeccCCCcceeEEE
Q 013207 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVD--NLSAVDILSACNLVNYFGKMVLGGSGVGEITVY 168 (447)
Q Consensus 91 ~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~--~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~~ 168 (447)
+.++||++|+||||...... ..++..++...+.+.+++.. .
T Consensus 74 -------------------------~~gi~v~~I~GNHD~~~~~~~~~~~~~~ll~~~~~v~v~~~~------------~ 116 (340)
T PHA02546 74 -------------------------EAGITLHVLVGNHDMYYKNTIRPNAPTELLGQYDNITVIDEP------------T 116 (340)
T ss_pred -------------------------HCCCeEEEEccCCCcccccccccCchHHHHhhCCCEEEeCCc------------e
Confidence 35899999999999853221 11345667765666666532 1
Q ss_pred EEEEecCCeeEEEEecCCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccC----C--CCCccccccc
Q 013207 169 PILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKT----N--PKNAINEHFL 242 (447)
Q Consensus 169 Pi~l~~g~~~vaiyGl~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~----~--~~~~i~~~~~ 242 (447)
++.+ ..+.++++||..++.+..++ +++. .+..+|+++|+.+.|. | ....++...+
T Consensus 117 ~v~i----~g~~i~~lP~~~~~~~~~~~------~~l~---------~~~~~ill~H~~v~g~~~~~g~~~~~~~~~~~~ 177 (340)
T PHA02546 117 TVDF----DGCSIDLIPWICKENTEEIL------EFIK---------NSKSEYCVGHWELNGFYFYKGMKSDHGLDPDFL 177 (340)
T ss_pred EEEE----CCEEEEECCCCCHHHHHHHH------HHhc---------cCCCcEEEEeeEEecCcccCCCccccCCChhHh
Confidence 2223 23678889999876554322 2332 1456899999876542 1 1122334445
Q ss_pred ccCCcEEEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEEEEeCCeeEEEEEECCCCCcEEEEEEEe
Q 013207 243 PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIIL 322 (447)
Q Consensus 243 ~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~~~~~~~~~i~L~~~Rpf~~~~i~l 322 (447)
..|||||+||+|+++ .. ..++|||||+++||+|. ..+|||++++++.. +++++|++ .|+|.++....
T Consensus 178 -~~fdyvALGHiH~~~----~~----~~i~Y~GSp~~~sf~E~-~~~KG~~~vd~~~~--~~efip~~-~~~~~~i~~~~ 244 (340)
T PHA02546 178 -KKYKQVWSGHFHTIS----EK----GNVTYIGTPYTLTAGDE-NDPRGFWVFDTETH--KLEFIANP-TTWHRRITYPD 244 (340)
T ss_pred -ccCCEEeecccccCc----cc----CCEEEeCCceeeCcccc-CCCCeEEEEECCCC--ceEEEeCC-CceEEEEEecc
Confidence 459999999999964 22 36999999999999983 67999999998765 47899997 58898766543
No 6
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.98 E-value=1.6e-31 Score=259.97 Aligned_cols=227 Identities=21% Similarity=0.236 Sum_probs=150.9
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCccee
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~ 92 (447)
|||+|+||||||....+..|..++..+|+++++.+++++||+|+++||+||...|+..+...+.+.|+++.
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~--------- 71 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLS--------- 71 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHH---------
Confidence 89999999999998877778888889999999999999999999999999999998876655566666653
Q ss_pred eechhhhcccccccccccCCCCCCCC-CcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcceeEEEEEE
Q 013207 93 VVSDQAVNFQNKFGHVNYEDPHFNVG-LPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (447)
Q Consensus 93 ~lsd~~~~f~~~~~~~n~~d~~~~~~-ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~~Pi~ 171 (447)
..+ +||++|+||||.+.+.. ....++...| +++++... ....++.
T Consensus 72 -----------------------~~~~i~v~~i~GNHD~~~~~~--~~~~l~~~~~-v~i~~~~~--------~~~~~~~ 117 (253)
T TIGR00619 72 -----------------------DANPIPIVVISGNHDSAQRLS--AAKKLLIELG-VFVVGFPV--------GDPQILL 117 (253)
T ss_pred -----------------------hcCCceEEEEccCCCChhhcc--cchhHHHhCC-eEEEEecc--------cCceEEE
Confidence 234 89999999999987754 2345566555 45666531 1123555
Q ss_pred EecC--CeeEEEEecCCCChHHHHhhhcCh-----------hHHh-hccchhhhhccccCceeEEEeecccccC------
Q 013207 172 IRKG--STAVALYGLGNIRDERLNRMFQTP-----------HAVQ-WMRPEAQEECQVSDWFNILVLHQNRVKT------ 231 (447)
Q Consensus 172 l~~g--~~~vaiyGl~~~~~~~l~~~~~~~-----------~~v~-~l~p~~~~~~~~~~~~~Ill~H~~~~~~------ 231 (447)
+.++ +..+.+...++..+.+..+.+.+. ..+. .+..... .. .++.++|+|+|+.+.|.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~Il~~H~~v~g~~~~~se 195 (253)
T TIGR00619 118 LKDTANGELLIVGLPLLPREALLTRAGLDGFGLELLLLHLDVKLRQALEGLIR-RL-DPDLPKILLAHLFTAGATKSATE 195 (253)
T ss_pred eccCCCCceEEEEeccCCHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHH-hc-CCCCCEEEEEcceeccCCCcCce
Confidence 6532 222333333333332222111110 0011 1111100 11 23578999999998653
Q ss_pred -----CCCCcccccccccCCcEEEeccccCcccCCcccCCCCceEeccCCccccccccCccCCce
Q 013207 232 -----NPKNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKH 291 (447)
Q Consensus 232 -----~~~~~i~~~~~~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg 291 (447)
|+...++.+.++. +||||+||+|++|. .. .+..++|||||.++||+|. ...||
T Consensus 196 ~~~~~g~~~~v~~~~~~~-~dYvALGHiH~~q~----~~-~~~~i~YsGSp~~~sf~E~-~~~K~ 253 (253)
T TIGR00619 196 RRIYIGFTYAVPLINFPE-ADYVALGHHHIHKI----SK-GRERVRYSGSPFPLSFDEA-GEDKG 253 (253)
T ss_pred EEeeECCccccCHHHCCc-cchhhccccccccc----cC-CCCCEEECCCCccCCcCcc-cCCCC
Confidence 1223344555665 79999999999653 32 3468999999999999984 55564
No 7
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.95 E-value=5.1e-27 Score=222.32 Aligned_cols=215 Identities=41% Similarity=0.610 Sum_probs=149.7
Q ss_pred EEEEEcCCCCCCCCCccc---ccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcc
Q 013207 14 RILVATDCHLGYMEKDEI---RRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (447)
Q Consensus 14 rILh~SD~HLG~~~~~~~---r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~ 90 (447)
||+|+||+|||....... |..+.+.+|+++++.+.+.++|+||++||+||...++...+..+.+.|+++.
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~------- 73 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLK------- 73 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHH-------
Confidence 799999999998765433 4788899999999999999999999999999999888877777778887752
Q ss_pred eeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcceeEEEEE
Q 013207 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPI 170 (447)
Q Consensus 91 ~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~~Pi 170 (447)
..++|+++++||||.+..... ....+...+ +..++.. .....+.
T Consensus 74 -------------------------~~~~~v~~~~GNHD~~~~~~~--~~~~~~~~~-~~~~~~~--------~~~~~~~ 117 (223)
T cd00840 74 -------------------------EAGIPVFIIAGNHDSPSRLGA--LSPLLALSG-LHLVGVE--------EDVLTPL 117 (223)
T ss_pred -------------------------HCCCCEEEecCCCCCcccccc--ccchHhhCc-EEEEccc--------CcceeEE
Confidence 247899999999999876542 112222222 2222100 1122334
Q ss_pred EEecCCeeEEEEecCCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCCC-----cccccccccC
Q 013207 171 LIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKN-----AINEHFLPRF 245 (447)
Q Consensus 171 ~l~~g~~~vaiyGl~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~-----~i~~~~~~~~ 245 (447)
.+..+..++.|+|++|.........+.. ....... ...+.++|+++|+++.+..... .....+...+
T Consensus 118 ~~~~~~~~v~i~g~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (223)
T cd00840 118 LLPKGGTGVAIYGLPYLRRSRLRDLLAD--AELRPRP------LDPDDFNILLLHGGVAGAGPSDSERAPFVPEALLPAG 189 (223)
T ss_pred EeccCCeEEEEEECCCCCHHHHHHHHHH--HHHHhhc------cCCCCcEEEEEeeeeecCCCCcccccccCcHhhcCcC
Confidence 4445667899999999877654332210 0001111 1236789999999987654332 1223456778
Q ss_pred CcEEEeccccCcccCCcccCCCCceEeccCCccccccc
Q 013207 246 LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLI 283 (447)
Q Consensus 246 ~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~ 283 (447)
+|||++||+|.+++. ...+..++|||||.++||+
T Consensus 190 ~d~v~~GH~H~~~~~----~~~~~~~~ypGS~~~~~f~ 223 (223)
T cd00840 190 FDYVALGHIHRPQII----LGGGPPIVYPGSPEGLSFS 223 (223)
T ss_pred CCEEECCCcccCeee----cCCCceEEeCCCccccCCC
Confidence 999999999998753 2235789999999999984
No 8
>PF04152 Mre11_DNA_bind: Mre11 DNA-binding presumed domain ; InterPro: IPR007281 The Mre11 complex is a multi-subunit nuclease that is composed of Mre11, Rad50 and Nbs1/Xrs2, and is involved in checkpoint signalling and DNA replication []. Mre11 has an intrinsic DNA-binding activity that is stimulated by Rad50 on its own or in combination with Nbs1 [].; GO: 0004519 endonuclease activity, 0030145 manganese ion binding, 0006302 double-strand break repair, 0005634 nucleus; PDB: 4FBW_B 4FBK_A 4FCX_B 4FBQ_B 3T1I_B.
Probab=99.95 E-value=4.1e-28 Score=223.13 Aligned_cols=134 Identities=46% Similarity=0.810 Sum_probs=79.3
Q ss_pred eEEEEEECCCCCcEEEEEEEecccC-CCCCCCHhHHHHHHHHHHHHHHHHhhhcc----------ccC-CCccCceeEEE
Q 013207 302 YRPTKIPLTSVRPFEYTEIILKDEA-DIDPDDQNSILEHLDKVVRNLIERSSKKT----------VNR-SELKLPLVRIK 369 (447)
Q Consensus 302 ~~~~~i~L~~~Rpf~~~~i~l~~~~-~~~~~~~~~~~~~l~~~v~~~i~~~~~~~----------~~~-~~~~~pl~rlr 369 (447)
|++++|||+|+|||++.+++|++.. ..++++.+++.++|.+.|++||++++.++ .+. ..+++||||||
T Consensus 1 f~~~pIpLkTVRPFv~~~i~L~~~~~~~~~~~~~~v~~~l~~~Ve~mI~~A~~~~~~~~~~~~~~~~~~~~~~lPLIRLR 80 (175)
T PF04152_consen 1 FRLEPIPLKTVRPFVFDDIVLSDEPLPLDPDNKEDVEKFLREKVEEMIEEAKEEWEELQREPDDQTGHPKQPPLPLIRLR 80 (175)
T ss_dssp EEEEEEE-SSS--EEEEEEEGGG-TSSSSTTHHHHHHHHHHHHHHHHHHHHHHHC--HHHHT--STTTSSS-SS-EEEEE
T ss_pred CCcccccCCCCCCEEEEEEEeCCcCCCCCcchHHHHHHHHHHHHHHHHHHhHhhhccccccccccccCcccCCCCEEEEE
Confidence 5789999999999999999999985 46777889999999999999999998876 333 38999999999
Q ss_pred EeecC-CcccCccchhhhhhhccCCCcceEEEeeeccccccc------cccCcccccCccccccccHHHHHhc
Q 013207 370 VDYSG-FMTINPQRFGQKYVGKVANPQDILIFSKSSKKSKAE------AKIDDFERLRPEELNQQNIEALVAE 435 (447)
Q Consensus 370 v~~~~-~~~~~~~~~~~~~~~~vanp~d~~~f~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (447)
|+|+| ++++||+||||+|+||||||+||++|+|||+.+.+. ....+.....++.+++.+|++||++
T Consensus 81 Vdys~~~~~~N~~RFgq~FvgrVANP~Dil~f~rkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~lV~~ 153 (175)
T PF04152_consen 81 VDYSGGFEVFNPQRFGQRFVGRVANPNDILQFYRKKKKKKKKKKKKDEDDPDEEEPLAPEELDQVRVEDLVKE 153 (175)
T ss_dssp EE-TTT-----CHHHHHCCTTTBS-SSSSEEEE----------------------------------------
T ss_pred EEecCCCcccCHHHHHHHhccccCChHHeEEEEecccccccccccccccccchhhhccccccccccHHHHHHH
Confidence 99998 999999999999999999999999999999877641 1223344566888999999999998
No 9
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.82 E-value=3.3e-19 Score=169.35 Aligned_cols=170 Identities=24% Similarity=0.308 Sum_probs=114.7
Q ss_pred ceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcce
Q 013207 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (447)
Q Consensus 12 ~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~ 91 (447)
.|||+|+||+|++.... ...++++++.+.++++|+|+++||+++...+.. ..+.++++++
T Consensus 1 ~~~i~~~sDlH~~~~~~--------~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~---~~~~~~l~~l--------- 60 (223)
T cd07385 1 GLRIAHLSDLHLGPFVS--------RERLERLVEKINALKPDLVVLTGDLVDGSVDVL---ELLLELLKKL--------- 60 (223)
T ss_pred CCEEEEEeecCCCccCC--------HHHHHHHHHHHhccCCCEEEEcCcccCCcchhh---HHHHHHHhcc---------
Confidence 48999999999997542 256899999999999999999999999876544 2345566653
Q ss_pred eeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcceeEEEEEE
Q 013207 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (447)
Q Consensus 92 ~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~~Pi~ 171 (447)
...+|+++++||||....... .....+...|+..+... .+.
T Consensus 61 ------------------------~~~~~v~~v~GNHD~~~~~~~-~~~~~l~~~~v~~L~~~--------------~~~ 101 (223)
T cd07385 61 ------------------------KAPLGVYAVLGNHDYYSGDEE-NWIEALESAGITVLRNE--------------SVE 101 (223)
T ss_pred ------------------------CCCCCEEEECCCcccccCchH-HHHHHHHHcCCEEeecC--------------cEE
Confidence 346899999999999766432 11566777665322221 234
Q ss_pred EecCCeeEEEEecCCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCCCcccccccccCCcEEEe
Q 013207 172 IRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFVVW 251 (447)
Q Consensus 172 l~~g~~~vaiyGl~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~i~~~~~~~~~D~v~~ 251 (447)
+..++..+.++|+++..... . .....+.. ..++.++|+++|++... +.+...++||+++
T Consensus 102 ~~~~~~~i~i~G~~~~~~~~-----~--~~~~~~~~------~~~~~~~I~l~H~P~~~--------~~~~~~~~dl~l~ 160 (223)
T cd07385 102 ISVGGATIGIAGVDDGLGRR-----P--DLEKALKG------LDEDDPNILLAHQPDTA--------EEAAAWGVDLQLS 160 (223)
T ss_pred eccCCeEEEEEeccCccccC-----C--CHHHHHhC------CCCCCCEEEEecCCChh--------HHhcccCccEEEe
Confidence 56667889999976532210 0 00011111 12367999999985421 2234567999999
Q ss_pred ccccCcccCC
Q 013207 252 GHEHECLIDP 261 (447)
Q Consensus 252 GH~H~~~i~p 261 (447)
||+|++|+.+
T Consensus 161 GHtHggqi~~ 170 (223)
T cd07385 161 GHTHGGQIRL 170 (223)
T ss_pred ccCCCCEEec
Confidence 9999998753
No 10
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.78 E-value=8.4e-18 Score=165.38 Aligned_cols=171 Identities=19% Similarity=0.298 Sum_probs=111.3
Q ss_pred CCCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCC
Q 013207 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRP 88 (447)
Q Consensus 9 ~~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~ 88 (447)
..+.|||+|+||+|+|.... ...++++++.+++++||+|+++||+++...+. ....+.+.|+++.
T Consensus 46 ~~~~~rI~~lSDlH~~~~~~--------~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~~--~~~~~~~~L~~L~----- 110 (271)
T PRK11340 46 NAAPFKILFLADLHYSRFVP--------LSLISDAIALGIEQKPDLILLGGDYVLFDMPL--NFSAFSDVLSPLA----- 110 (271)
T ss_pred CCCCcEEEEEcccCCCCcCC--------HHHHHHHHHHHHhcCCCEEEEccCcCCCCccc--cHHHHHHHHHHHh-----
Confidence 34569999999999985321 34578899999999999999999999843222 1233556677652
Q ss_pred cceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcc-hhhhhhhcCCceEEecceeccCCCcceeEE
Q 013207 89 VQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNL-SAVDILSACNLVNYFGKMVLGGSGVGEITV 167 (447)
Q Consensus 89 ~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~-~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~ 167 (447)
...|||+|.||||...+.... ...+.++..|+. ++...
T Consensus 111 ----------------------------~~~pv~~V~GNHD~~~~~~~~~~~~~~l~~~gi~-lL~n~------------ 149 (271)
T PRK11340 111 ----------------------------ECAPTFACFGNHDRPVGTEKNHLIGETLKSAGIT-VLFNQ------------ 149 (271)
T ss_pred ----------------------------hcCCEEEecCCCCcccCccchHHHHHHHHhcCcE-EeeCC------------
Confidence 246999999999986543211 234567777753 33221
Q ss_pred EEEEEecCCeeEEEEecCCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCCCcccccccccCCc
Q 013207 168 YPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLD 247 (447)
Q Consensus 168 ~Pi~l~~g~~~vaiyGl~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~i~~~~~~~~~D 247 (447)
.+.+..++..+.|+|++...... . .....+ .++.++|+++|++.. + +.+...++|
T Consensus 150 -~~~i~~~~~~i~i~G~~d~~~~~----~---~~~~~~---------~~~~~~IlL~H~P~~-------~-~~~~~~~~d 204 (271)
T PRK11340 150 -ATVIATPNRQFELVGTGDLWAGQ----C---KPPPAS---------EANLPRLVLAHNPDS-------K-EVMRDEPWD 204 (271)
T ss_pred -eEEEeeCCcEEEEEEecchhccC----C---ChhHhc---------CCCCCeEEEEcCCCh-------h-HhhccCCCC
Confidence 23444556789999996432110 0 000111 125689999998752 1 223345799
Q ss_pred EEEeccccCcccC
Q 013207 248 FVVWGHEHECLID 260 (447)
Q Consensus 248 ~v~~GH~H~~~i~ 260 (447)
++++||+|++|+.
T Consensus 205 L~lsGHTHGGQi~ 217 (271)
T PRK11340 205 LMLCGHTHGGQLR 217 (271)
T ss_pred EEEeccccCCeEE
Confidence 9999999999874
No 11
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.72 E-value=2.3e-16 Score=155.35 Aligned_cols=233 Identities=19% Similarity=0.299 Sum_probs=128.2
Q ss_pred CCCCCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013207 7 EDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCL 84 (447)
Q Consensus 7 ~~~~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~--~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~ 84 (447)
+...+.|||+|+||+||.........+.+..+.|+.+++.+++. ++|+||++|||.+.. +.+....+.+.|.+
T Consensus 9 ~~~~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~--~~~~~~~~~~~l~~--- 83 (275)
T PRK11148 9 LAGEARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDH--SSEAYQHFAEGIAP--- 83 (275)
T ss_pred cCCCCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCC--CHHHHHHHHHHHhh---
Confidence 34457799999999999654444444567788999999998765 699999999999965 34455555555554
Q ss_pred CCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcce
Q 013207 85 NDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGE 164 (447)
Q Consensus 85 ~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~ 164 (447)
.++|+++|+||||..... .+.+...++-. ....+.+. .
T Consensus 84 --------------------------------l~~Pv~~v~GNHD~~~~~-----~~~~~~~~~~~--~~~~~~~~---~ 121 (275)
T PRK11148 84 --------------------------------LRKPCVWLPGNHDFQPAM-----YSALQDAGISP--AKHVLIGE---H 121 (275)
T ss_pred --------------------------------cCCcEEEeCCCCCChHHH-----HHHHhhcCCCc--cceEEecC---C
Confidence 368999999999984321 12222211100 00000000 0
Q ss_pred eEEEEEEEecCCeeEEEEec--CCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCC----Cccc
Q 013207 165 ITVYPILIRKGSTAVALYGL--GNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPK----NAIN 238 (447)
Q Consensus 165 i~~~Pi~l~~g~~~vaiyGl--~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~----~~i~ 238 (447)
+ .-+.+.. .++|. |++.+ ++++|++....+. ++...|+++|++....+.. ..+.
T Consensus 122 ~--~~i~Lds-----~~~g~~~G~l~~----------~ql~wL~~~L~~~---~~~~~vv~~hH~P~~~~~~~~d~~~l~ 181 (275)
T PRK11148 122 W--QILLLDS-----QVFGVPHGELSE----------YQLEWLERKLADA---PERHTLVLLHHHPLPAGCAWLDQHSLR 181 (275)
T ss_pred E--EEEEecC-----CCCCCcCCEeCH----------HHHHHHHHHHhhC---CCCCeEEEEcCCCCCCCcchhhccCCC
Confidence 1 1122221 12232 22333 3456666554321 2345566677644322110 0110
Q ss_pred -----cccc-c-cCCcEEEeccccCcccCCcccCCCCceEeccCCccc-c-----ccccCccCCceEEEEEEeCCe-eEE
Q 013207 239 -----EHFL-P-RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVA-T-----SLIEGESKPKHVLLLEIKENQ-YRP 304 (447)
Q Consensus 239 -----~~~~-~-~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~-~-----s~~e~E~~~Kg~~lvei~~~~-~~~ 304 (447)
.+++ . .++++|++||+|..... .. .+..++..+|+.. . .+.- +..+.|+.++++.+++ +..
T Consensus 182 n~~~l~~ll~~~~~v~~vl~GH~H~~~~~--~~--~gi~~~~~ps~~~q~~~~~~~~~~-~~~~~g~~~~~l~~~g~~~~ 256 (275)
T PRK11148 182 NAHELAEVLAKFPNVKAILCGHIHQELDL--DW--NGRRLLATPSTCVQFKPHCTNFTL-DTVAPGWRELELHADGSLET 256 (275)
T ss_pred CHHHHHHHHhcCCCceEEEecccChHHhc--eE--CCEEEEEcCCCcCCcCCCCCcccc-ccCCCcEEEEEEcCCCcEEE
Confidence 1223 2 26899999999986532 12 2333334444331 1 1111 1345689999997654 666
Q ss_pred EEEECCC
Q 013207 305 TKIPLTS 311 (447)
Q Consensus 305 ~~i~L~~ 311 (447)
+.+.+..
T Consensus 257 ~~~~~~~ 263 (275)
T PRK11148 257 EVHRLAD 263 (275)
T ss_pred EEEEcCC
Confidence 6677765
No 12
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.66 E-value=3.4e-16 Score=150.29 Aligned_cols=199 Identities=20% Similarity=0.279 Sum_probs=114.0
Q ss_pred EEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcce
Q 013207 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (447)
Q Consensus 14 rILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~--~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~ 91 (447)
||+|+||+|+|.......+..+...+|+.+++.+++. ++|+|+++|||++...+ .....+.+.|++
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~l~~---------- 68 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSP--ESYERLRELLAA---------- 68 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCH--HHHHHHHHHHhh----------
Confidence 7999999999965322234556778899999999998 99999999999998643 334445555553
Q ss_pred eeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcceeEEEEEE
Q 013207 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (447)
Q Consensus 92 ~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~~Pi~ 171 (447)
.++|+++|+||||..... ...+..... ..+.. ...
T Consensus 69 -------------------------~~~p~~~v~GNHD~~~~~-----~~~~~~~~~--~~~~~-------------~~~ 103 (240)
T cd07402 69 -------------------------LPIPVYLLPGNHDDRAAM-----RAVFPELPP--APGFV-------------QYV 103 (240)
T ss_pred -------------------------cCCCEEEeCCCCCCHHHH-----HHhhccccc--ccccc-------------cee
Confidence 368999999999984321 112221100 00000 011
Q ss_pred EecCCeeEEEEecCCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCC--Cc--c--c---cccc
Q 013207 172 IRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPK--NA--I--N---EHFL 242 (447)
Q Consensus 172 l~~g~~~vaiyGl~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~--~~--i--~---~~~~ 242 (447)
+..+ .+.++++...........+.+ +.++|++...... .+.+.|+++|++....+.. +. . . .+++
T Consensus 104 ~~~~--~~~~i~lds~~~~~~~~~~~~-~ql~wL~~~L~~~---~~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l 177 (240)
T cd07402 104 VDLG--GWRLILLDSSVPGQHGGELCA-AQLDWLEAALAEA---PDKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVL 177 (240)
T ss_pred EecC--CEEEEEEeCCCCCCcCCEECH-HHHHHHHHHHHhC---CCCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHH
Confidence 2222 355555543221100000111 3456665554332 2567899999987543210 00 0 0 1122
Q ss_pred c-c-CCcEEEeccccCcccCCcccCCCCceEeccCCccc
Q 013207 243 P-R-FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVA 279 (447)
Q Consensus 243 ~-~-~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~ 279 (447)
. . +++++++||+|..... .. .+..+++.||...
T Consensus 178 ~~~~~v~~v~~GH~H~~~~~--~~--~g~~~~~~gs~~~ 212 (240)
T cd07402 178 ARHPNVRAILCGHVHRPIDG--SW--GGIPLLTAPSTCH 212 (240)
T ss_pred hcCCCeeEEEECCcCchHHe--EE--CCEEEEEcCccee
Confidence 2 2 6899999999996542 22 3456666666443
No 13
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.65 E-value=7.8e-15 Score=143.27 Aligned_cols=238 Identities=14% Similarity=0.178 Sum_probs=128.4
Q ss_pred CCceEEEEEcCCCCCCCCCc----ccccccHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCCCHH---HHHHHHHHHH
Q 013207 10 ANTVRILVATDCHLGYMEKD----EIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRS---TLVKAIEILR 80 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~----~~r~~d~~~~feeil~~a~~~--~vD~VliaGDLfd~~~ps~~---~l~~~~~~L~ 80 (447)
.+.++|+|+||.|+|..... ..+..+....++.+++.+.+. ++|+|+++|||++....... ....+.++++
T Consensus 2 ~~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T cd07395 2 SGPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLS 81 (262)
T ss_pred CCCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHh
Confidence 35699999999999964322 123344456789999999887 99999999999998754321 1222333333
Q ss_pred HhhcCCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCC
Q 013207 81 RHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGS 160 (447)
Q Consensus 81 ~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~ 160 (447)
++ ..++|++.++||||....... ..+..+. ..||..-.. .
T Consensus 82 ~~---------------------------------~~~vp~~~i~GNHD~~~~~~~-~~~~~f~-----~~~g~~~y~-~ 121 (262)
T cd07395 82 LL---------------------------------DPDIPLVCVCGNHDVGNTPTE-ESIKDYR-----DVFGDDYFS-F 121 (262)
T ss_pred hc---------------------------------cCCCcEEEeCCCCCCCCCCCh-hHHHHHH-----HHhCCcceE-E
Confidence 32 347899999999998432111 1111111 012210000 0
Q ss_pred CcceeEEEEEEEecCCeeEEEEecCCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCC---Cc-
Q 013207 161 GVGEITVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPK---NA- 236 (447)
Q Consensus 161 ~~~~i~~~Pi~l~~g~~~vaiyGl~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~---~~- 236 (447)
..+.+. -|.+... ....-.+.+++.. +.++|++..............|++.|.+....+.. .+
T Consensus 122 ~~~~~~--~i~lds~-~~~~~~~~~~~~~----------~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~ 188 (262)
T cd07395 122 WVGGVF--FIVLNSQ-LFFDPSEVPELAQ----------AQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYF 188 (262)
T ss_pred EECCEE--EEEeccc-cccCccccccchH----------HHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccC
Confidence 000111 1222110 0000001122222 44566665543321012457899999988532211 11
Q ss_pred -cc-------cccc-ccCCcEEEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEEEEeCCeeEEEEE
Q 013207 237 -IN-------EHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKI 307 (447)
Q Consensus 237 -i~-------~~~~-~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~~~~~~~~~i 307 (447)
+. ..++ ..+++++++||.|..... .. .+...+.+|++. ..+. ..+.|+.++++++++++.|..
T Consensus 189 ~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~~--~~--~g~~~~~~~~~~-~~~~---~~~~g~~~~~v~~~~~~~~~~ 260 (262)
T cd07395 189 NIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAGG--RY--GGLEMVVTSAIG-AQLG---NDKSGLRIVKVTEDKIVHEYY 260 (262)
T ss_pred CcCHHHHHHHHHHHHhcCceEEEECccccCCce--EE--CCEEEEEcCcee-cccC---CCCCCcEEEEECCCceeeeee
Confidence 11 1122 357999999999986542 22 233344444443 3443 357899999999888877654
Q ss_pred E
Q 013207 308 P 308 (447)
Q Consensus 308 ~ 308 (447)
.
T Consensus 261 ~ 261 (262)
T cd07395 261 S 261 (262)
T ss_pred e
Confidence 3
No 14
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.62 E-value=6.5e-16 Score=137.90 Aligned_cols=76 Identities=24% Similarity=0.305 Sum_probs=50.5
Q ss_pred CceeEEEeecccccCCC-CCcccccccccCCcEEEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEE
Q 013207 217 DWFNILVLHQNRVKTNP-KNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLL 295 (447)
Q Consensus 217 ~~~~Ill~H~~~~~~~~-~~~i~~~~~~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lv 295 (447)
+..+|+++|........ ...+...+....++++++||+|..+.. ..++..+++|||....+.. .+++++++
T Consensus 80 ~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~----~~~~~~~~~~Gs~~~~~~~----~~~~~~i~ 151 (156)
T PF12850_consen 80 DGFKILLSHGHPYDVQWDPAELREILSRENVDLVLHGHTHRPQVF----KIGGIHVINPGSIGGPRHG----DQSGYAIL 151 (156)
T ss_dssp TTEEEEEESSTSSSSTTTHHHHHHHHHHTTSSEEEESSSSSEEEE----EETTEEEEEE-GSSS-SSS----SSEEEEEE
T ss_pred cCCeEEEECCCCcccccChhhhhhhhcccCCCEEEcCCcccceEE----EECCEEEEECCcCCCCCCC----CCCEEEEE
Confidence 35689999987643211 112223344577999999999997653 2235789999998877643 28899999
Q ss_pred EEeCC
Q 013207 296 EIKEN 300 (447)
Q Consensus 296 ei~~~ 300 (447)
+++.+
T Consensus 152 ~~~~~ 156 (156)
T PF12850_consen 152 DIEDK 156 (156)
T ss_dssp EETTT
T ss_pred EEecC
Confidence 98753
No 15
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.60 E-value=5.6e-15 Score=130.94 Aligned_cols=80 Identities=28% Similarity=0.375 Sum_probs=58.9
Q ss_pred EEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcceeee
Q 013207 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVV 94 (447)
Q Consensus 15 ILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~l 94 (447)
|+|+||+|+|.......... ...|+++++.+.+.++|+|+++||+++...+ .....+.++|+++.
T Consensus 1 il~isD~Hl~~~~~~~~~~~--~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~~~~l~----------- 65 (144)
T cd07400 1 ILHLSDLHFGPERKPELLAL--LSLLDRLLAEIKALDPDLVVITGDLTQRGLP--EEFEEAREFLDALP----------- 65 (144)
T ss_pred CeEeCccCCCCCcchhHHHH--HHHHHHHHHHHhccCCCEEEECCCCCCCCCH--HHHHHHHHHHHHcc-----------
Confidence 68999999997644322211 1227788999999999999999999997643 44555667777652
Q ss_pred chhhhcccccccccccCCCCCCCCCcEEEECCCCCC
Q 013207 95 SDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDD 130 (447)
Q Consensus 95 sd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~ 130 (447)
...+|+++|+||||.
T Consensus 66 ---------------------~~~~~~~~v~GNHD~ 80 (144)
T cd07400 66 ---------------------APLEPVLVVPGNHDV 80 (144)
T ss_pred ---------------------ccCCcEEEeCCCCeE
Confidence 112699999999997
No 16
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.60 E-value=1.6e-14 Score=137.90 Aligned_cols=201 Identities=18% Similarity=0.296 Sum_probs=115.3
Q ss_pred CceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcc
Q 013207 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (447)
Q Consensus 11 ~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~ 90 (447)
..|||+.+||+|-. +.+++.+++.+++.++|+|+++||+.+... ..+.+..+++.|.+
T Consensus 3 ~~~kIl~iSDiHgn------------~~~le~l~~~~~~~~~D~vv~~GDl~~~g~-~~~~~~~~l~~l~~--------- 60 (224)
T cd07388 3 TVRYVLATSNPKGD------------LEALEKLVGLAPETGADAIVLIGNLLPKAA-KSEDYAAFFRILGE--------- 60 (224)
T ss_pred ceeEEEEEEecCCC------------HHHHHHHHHHHhhcCCCEEEECCCCCCCCC-CHHHHHHHHHHHHh---------
Confidence 46899999999932 678999999999999999999999999752 23333334444432
Q ss_pred eeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhh-hhh----cCCceEEecceeccCCCccee
Q 013207 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVD-ILS----ACNLVNYFGKMVLGGSGVGEI 165 (447)
Q Consensus 91 ~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d-~L~----~~g~v~~fg~~~l~~~~~~~i 165 (447)
.+.|+++|+||||.+. . ..+. .+. .++.+++.++.
T Consensus 61 --------------------------l~~pv~~V~GNhD~~v-~---~~l~~~~~~~~~~p~~~~lh~~~---------- 100 (224)
T cd07388 61 --------------------------AHLPTFYVPGPQDAPL-W---EYLREAYNAELVHPEIRNVHETF---------- 100 (224)
T ss_pred --------------------------cCCceEEEcCCCChHH-H---HHHHHHhcccccCccceecCCCe----------
Confidence 3689999999999851 1 1111 111 01223333321
Q ss_pred EEEEEEEecCCeeEEEEecCCCChHHHHhhhcChhH---Hhhccc----hhhhhccccCceeEEEeecccccCCCC----
Q 013207 166 TVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHA---VQWMRP----EAQEECQVSDWFNILVLHQNRVKTNPK---- 234 (447)
Q Consensus 166 ~~~Pi~l~~g~~~vaiyGl~~~~~~~l~~~~~~~~~---v~~l~p----~~~~~~~~~~~~~Ill~H~~~~~~~~~---- 234 (447)
+.+. ..+.++|+|...... ..+.+.+. ..|+.. .... ......||++|++..+.+..
T Consensus 101 ----~~~~---g~~~~~GlGGs~~~~--~e~sE~e~~~~~~~~~~~~l~~~~~---~~~~~~VLv~H~PP~g~g~~h~GS 168 (224)
T cd07388 101 ----AFWR---GPYLVAGVGGEIADE--GEPEEHEALRYPAWVAEYRLKALWE---LKDYRKVFLFHTPPYHKGLNEQGS 168 (224)
T ss_pred ----EEec---CCeEEEEecCCcCCC--CCcCHHHHhhhhhhHHHHHHHHHHh---CCCCCeEEEECCCCCCCCCCccCH
Confidence 1221 236677776443211 00111000 011100 0000 12457899999999765311
Q ss_pred Cccccccc-ccCCcEEEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEEEEeCCe
Q 013207 235 NAINEHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQ 301 (447)
Q Consensus 235 ~~i~~~~~-~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~~~~ 301 (447)
..+ ..++ .....++++||+|... .++ ++..|++||+ ++++ +++++++++..
T Consensus 169 ~al-r~~I~~~~P~l~i~GHih~~~---~~~--g~t~vvNpg~-----~~~g-----~~a~i~~~~~~ 220 (224)
T cd07388 169 HEV-AHLIKTHNPLVVLVGGKGQKH---ELL--GASWVVVPGD-----LSEG-----RYALLDLRARK 220 (224)
T ss_pred HHH-HHHHHHhCCCEEEEcCCceeE---EEe--CCEEEECCCc-----ccCC-----cEEEEEecCcc
Confidence 111 1222 2346799999999432 233 3578999997 3332 57899987544
No 17
>PRK09453 phosphodiesterase; Provisional
Probab=99.58 E-value=9.5e-14 Score=128.51 Aligned_cols=172 Identities=21% Similarity=0.291 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCC----CHHHHHHHHHHHHHhhcCCCC
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP----SRSTLVKAIEILRRHCLNDRP 88 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~p----s~~~l~~~~~~L~~l~~~~~~ 88 (447)
|||+++||+|.. +.+++++++.+++.++|.|+++||+++.... ......++.+.|++
T Consensus 1 mri~viSD~Hg~------------~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~------- 61 (182)
T PRK09453 1 MKLMFASDTHGS------------LPATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNA------- 61 (182)
T ss_pred CeEEEEEeccCC------------HHHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHh-------
Confidence 899999999954 3568899999999999999999999985421 11112234455554
Q ss_pred cceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcceeEEE
Q 013207 89 VQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVY 168 (447)
Q Consensus 89 ~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~~ 168 (447)
.+.++++|+||||..... .+. ++
T Consensus 62 ----------------------------~~~~v~~V~GNhD~~~~~-------~~~--~~-------------------- 84 (182)
T PRK09453 62 ----------------------------YADKIIAVRGNCDSEVDQ-------MLL--HF-------------------- 84 (182)
T ss_pred ----------------------------cCCceEEEccCCcchhhh-------hcc--CC--------------------
Confidence 256899999999964211 000 00
Q ss_pred EEEEecCCeeEEEEecCCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCCCcccccccccCCcE
Q 013207 169 PILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDF 248 (447)
Q Consensus 169 Pi~l~~g~~~vaiyGl~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~i~~~~~~~~~D~ 248 (447)
|.. .+ + .++. -+..+|+++|+.... +. .+ ......|+
T Consensus 85 ~~~----------------~~------~------~~~~---------l~g~~i~l~HG~~~~--~~-~~---~~~~~~d~ 121 (182)
T PRK09453 85 PIM----------------AP------Y------QQVL---------LEGKRLFLTHGHLYG--PE-NL---PALHDGDV 121 (182)
T ss_pred ccc----------------Cc------e------EEEE---------ECCeEEEEECCCCCC--hh-hc---ccccCCCE
Confidence 000 00 0 0000 023578999975422 11 11 11235899
Q ss_pred EEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEEEEeCCeeEEEEEECCCCCcE
Q 013207 249 VVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPF 315 (447)
Q Consensus 249 v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~~~~~~~~~i~L~~~Rpf 315 (447)
+++||+|.+... .. .+..+++|||..... + ..+.+|++++++ +++.+.+..-++.
T Consensus 122 vi~GHtH~p~~~--~~--~~~~~iNpGs~~~p~---~-~~~~s~~il~~~----~~~~~~~~~~~~~ 176 (182)
T PRK09453 122 LVYGHTHIPVAE--KQ--GGIILFNPGSVSLPK---G-GYPASYGILDDN----VLSVIDLEGGEVI 176 (182)
T ss_pred EEECCCCCCcce--EE--CCEEEEECCCccccC---C-CCCCeEEEEECC----cEEEEECCCCeEE
Confidence 999999996543 22 357899999966433 2 234588898873 3456666655543
No 18
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.56 E-value=1.7e-13 Score=126.68 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=47.2
Q ss_pred cCCcEEEeccccCcccCCcccCCCCceEeccCCcccc-ccccCccCCceEEEEEEeCCeeEEEEEECCCCCcEEEE
Q 013207 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVAT-SLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYT 318 (447)
Q Consensus 244 ~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~-s~~e~E~~~Kg~~lvei~~~~~~~~~i~L~~~Rpf~~~ 318 (447)
..+|++++||+|.+... .. .+..+++|||.... +-..+ ....+|++++++.+.+.++.+.|..-| +...
T Consensus 105 ~~~dvii~GHTH~p~~~--~~--~g~~viNPGSv~~~~~~~~~-~~~~syail~~~~~~~~~~~~~l~~~~-~~~~ 174 (178)
T cd07394 105 LDVDILISGHTHKFEAF--EH--EGKFFINPGSATGAFSPLDP-NVIPSFVLMDIQGSKVVTYVYQLIDGE-VKVE 174 (178)
T ss_pred cCCCEEEECCCCcceEE--EE--CCEEEEECCCCCCCCCCCCC-CCCCeEEEEEecCCeEEEEEEEEECCc-EEEE
Confidence 45799999999997542 22 35789999997532 11111 234599999999888888888875433 4443
No 19
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.56 E-value=5.9e-14 Score=126.82 Aligned_cols=52 Identities=21% Similarity=0.381 Sum_probs=38.3
Q ss_pred cCCcEEEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEEEEeCCeeE
Q 013207 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYR 303 (447)
Q Consensus 244 ~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~~~~~~ 303 (447)
...|+|++||+|..... .. .+..+++|||....... .+.+|++++++++.++
T Consensus 105 ~~~d~vi~GHtH~~~~~--~~--~~~~~iNpGs~~~~~~~----~~~~~~il~~~~~~~~ 156 (158)
T TIGR00040 105 LGVDVLIFGHTHIPVAE--EL--RGILLINPGSLTGPRNG----NTPSYAILDVDKDKVT 156 (158)
T ss_pred cCCCEEEECCCCCCccE--EE--CCEEEEECCccccccCC----CCCeEEEEEecCCeEE
Confidence 46899999999997542 22 34688999998765432 2669999999877654
No 20
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.55 E-value=1.8e-13 Score=134.30 Aligned_cols=87 Identities=24% Similarity=0.323 Sum_probs=65.6
Q ss_pred eEEEEEcCCCCCCCCCc-ccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCH-HHHHHHHHHHHHhhcCCCCcc
Q 013207 13 VRILVATDCHLGYMEKD-EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSR-STLVKAIEILRRHCLNDRPVQ 90 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~-~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~-~~l~~~~~~L~~l~~~~~~~~ 90 (447)
+||+++||+|++....+ .....++...|+.+++.+++.++|+|+++|||++...+.. +.+..+.+.+.+
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~--------- 71 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDR--------- 71 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHh---------
Confidence 69999999998875432 2234567789999999999999999999999998776532 333344444443
Q ss_pred eeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCC
Q 013207 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGV 134 (447)
Q Consensus 91 ~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~ 134 (447)
.++|+++++||||.....
T Consensus 72 --------------------------l~~p~~~v~GNHD~~~~~ 89 (267)
T cd07396 72 --------------------------LKGPVHHVLGNHDLYNPS 89 (267)
T ss_pred --------------------------cCCCEEEecCcccccccc
Confidence 368999999999986543
No 21
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.53 E-value=1.5e-13 Score=123.31 Aligned_cols=79 Identities=22% Similarity=0.194 Sum_probs=49.4
Q ss_pred eeEEEeecccccCCCCCcccccccccCCcEEEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEEEEe
Q 013207 219 FNILVLHQNRVKTNPKNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIK 298 (447)
Q Consensus 219 ~~Ill~H~~~~~~~~~~~i~~~~~~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~ 298 (447)
.+|+++|+..............+...++||+++||+|.+... .. ++..+++|||...... ..+.+|++++++
T Consensus 76 ~~i~v~Hg~~~~~~~~~~~~~~~~~~~~d~vi~GHtH~~~~~--~~--~~~~~inpGs~~~~~~----~~~~~~~i~~~~ 147 (155)
T cd00841 76 KRIFLTHGHLYGVKNGLDRLYLAKEGGADVVLYGHTHIPVIE--KI--GGVLLLNPGSLSLPRG----GGPPTYAILEID 147 (155)
T ss_pred EEEEEECCcccccccchhhhhhhhhcCCCEEEECcccCCccE--EE--CCEEEEeCCCccCcCC----CCCCeEEEEEec
Confidence 467777766532211000001122346899999999997642 22 3578999999776543 357899999998
Q ss_pred CCeeEEEE
Q 013207 299 ENQYRPTK 306 (447)
Q Consensus 299 ~~~~~~~~ 306 (447)
+ +.+++.
T Consensus 148 ~-~~~~~~ 154 (155)
T cd00841 148 D-KGEVEI 154 (155)
T ss_pred C-CCcEEE
Confidence 7 555543
No 22
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.52 E-value=1.6e-13 Score=128.61 Aligned_cols=88 Identities=20% Similarity=0.273 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcc
Q 013207 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (447)
Q Consensus 11 ~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~ 90 (447)
+.|||+|+||+|+|..............+++.+.+.+.+.++|+||++||+++...+.........++++.+.
T Consensus 1 ~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~------- 73 (199)
T cd07383 1 GKFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMI------- 73 (199)
T ss_pred CceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHH-------
Confidence 3599999999999986432111112234555566666678999999999999988765322222223333221
Q ss_pred eeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCC
Q 013207 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDD 130 (447)
Q Consensus 91 ~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~ 130 (447)
..++|+++++||||.
T Consensus 74 -------------------------~~~~p~~~~~GNHD~ 88 (199)
T cd07383 74 -------------------------DRKIPWAATFGNHDG 88 (199)
T ss_pred -------------------------HcCCCEEEECccCCC
Confidence 247999999999993
No 23
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.51 E-value=7.2e-14 Score=128.52 Aligned_cols=176 Identities=23% Similarity=0.333 Sum_probs=94.5
Q ss_pred EEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcceeee
Q 013207 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVV 94 (447)
Q Consensus 15 ILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~l 94 (447)
|+++||+|.+. ..++. ..+++.++|+||++||+++...+... . ..+.|++
T Consensus 1 i~~~sD~H~~~------------~~~~~--~~~~~~~~D~vv~~GDl~~~~~~~~~--~-~~~~l~~------------- 50 (188)
T cd07392 1 ILAISDIHGDV------------EKLEA--IILKAEEADAVIVAGDITNFGGKEAA--V-EINLLLA------------- 50 (188)
T ss_pred CEEEEecCCCH------------HHHHH--HHhhccCCCEEEECCCccCcCCHHHH--H-HHHHHHh-------------
Confidence 68999999874 22333 45567899999999999998755322 1 1244442
Q ss_pred chhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcceeEEEEEEEec
Q 013207 95 SDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRK 174 (447)
Q Consensus 95 sd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~~Pi~l~~ 174 (447)
.++|+++|+||||...... .+. .+..+.-+. .+.+
T Consensus 51 ----------------------~~~p~~~v~GNHD~~~~~~------~~~-~~~~~~~~~--------------~~~~-- 85 (188)
T cd07392 51 ----------------------IGVPVLAVPGNCDTPEILG------LLT-SAGLNLHGK--------------VVEV-- 85 (188)
T ss_pred ----------------------cCCCEEEEcCCCCCHHHHH------hhh-cCcEecCCC--------------EEEE--
Confidence 4789999999999854321 111 121111111 1122
Q ss_pred CCeeEEEEecCCCChH--HHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccC-CCC--Cc--cc----cccc-
Q 013207 175 GSTAVALYGLGNIRDE--RLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKT-NPK--NA--IN----EHFL- 242 (447)
Q Consensus 175 g~~~vaiyGl~~~~~~--~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~-~~~--~~--i~----~~~~- 242 (447)
..+.++|++...+. .-...+.. ..+.++ .... ...+.+.|+++|++..+. ... .. .. ..++
T Consensus 86 --~~~~~~g~~~~~~~~~~~~~~~~~-~~l~~~-~~l~---~~~~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~li~ 158 (188)
T cd07392 86 --GGYTFVGIGGSNPTPFNTPIELSE-EEIVSD-GRLN---NLLAKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFIE 158 (188)
T ss_pred --CCEEEEEeCCCCCCCCCCccccCH-HHHHHh-hhhh---ccCCCCeEEEECCCCcCCcccccCCCCccCCHHHHHHHH
Confidence 13667776432110 00001111 233443 0111 113568999999998542 100 00 00 1122
Q ss_pred ccCCcEEEeccccCcccCCcccCCCCceEeccC
Q 013207 243 PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPG 275 (447)
Q Consensus 243 ~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypG 275 (447)
....+++++||+|..... ..+ ++..+++||
T Consensus 159 ~~~~~~~l~GH~H~~~~~-~~~--~~~~~~n~G 188 (188)
T cd07392 159 ERQPLLCICGHIHESRGV-DKI--GNTLVVNPG 188 (188)
T ss_pred HhCCcEEEEeccccccce-eee--CCeEEecCC
Confidence 235789999999997521 122 346788887
No 24
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.51 E-value=4.2e-13 Score=129.11 Aligned_cols=187 Identities=19% Similarity=0.182 Sum_probs=95.0
Q ss_pred EEEEcCCCCCCCCCc--ccccccHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcc
Q 013207 15 ILVATDCHLGYMEKD--EIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (447)
Q Consensus 15 ILh~SD~HLG~~~~~--~~r~~d~~~~feeil~~a~~~--~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~ 90 (447)
|.++||+|++..... ...++...+..+++.+.+... ++|+||++|||++...+. .....++.|+++
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~--~~~~~l~~l~~l-------- 70 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKLE--EAKLDLAWIDAL-------- 70 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCChH--HHHHHHHHHHhC--------
Confidence 568999999964321 123333334444555544444 899999999999654322 333444555532
Q ss_pred eeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcceeEEEEE
Q 013207 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPI 170 (447)
Q Consensus 91 ~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~~Pi 170 (447)
..|+|+|+||||..... .-...+.+...+..-.+... +
T Consensus 71 ---------------------------~~~v~~V~GNHD~~~~~-~~~~~~~l~~~~~~~~~n~~--------------~ 108 (232)
T cd07393 71 ---------------------------PGTKVLLKGNHDYWWGS-ASKLRKALEESRLALLFNNA--------------Y 108 (232)
T ss_pred ---------------------------CCCeEEEeCCccccCCC-HHHHHHHHHhcCeEEeccCc--------------E
Confidence 34899999999984221 11223345444432111111 1
Q ss_pred EEecCCeeEEEEecC-----CCCh---------HHHHhhhcChhHHhhccchhhhhcc-ccCceeEEEeecccccCCCC-
Q 013207 171 LIRKGSTAVALYGLG-----NIRD---------ERLNRMFQTPHAVQWMRPEAQEECQ-VSDWFNILVLHQNRVKTNPK- 234 (447)
Q Consensus 171 ~l~~g~~~vaiyGl~-----~~~~---------~~l~~~~~~~~~v~~l~p~~~~~~~-~~~~~~Ill~H~~~~~~~~~- 234 (447)
.+ ..+.|+|+. +... ..-..... ..+.|++........ ..+.++|+++|++....+..
T Consensus 109 ~~----~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~~~ 182 (232)
T cd07393 109 ID----DDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFE--RELERLELSLKAAKKREKEKIKIVMLHYPPANENGDD 182 (232)
T ss_pred EE----CCEEEEEEEeeCCCCCccccccccccchhHHHHHH--HHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCCCCH
Confidence 11 135566642 1110 00011111 233444433322110 11236999999987543211
Q ss_pred CcccccccccCCcEEEeccccCccc
Q 013207 235 NAINEHFLPRFLDFVVWGHEHECLI 259 (447)
Q Consensus 235 ~~i~~~~~~~~~D~v~~GH~H~~~i 259 (447)
..+.+.+-..++|+|++||+|..+.
T Consensus 183 ~~~~~~~~~~~v~~vl~GH~H~~~~ 207 (232)
T cd07393 183 SPISKLIEEYGVDICVYGHLHGVGR 207 (232)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcc
Confidence 1111112234689999999999765
No 25
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.51 E-value=1.3e-12 Score=122.33 Aligned_cols=203 Identities=22% Similarity=0.361 Sum_probs=118.6
Q ss_pred CceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCC--CCCCCCHHHHHHH-HHHHHHhhcCCC
Q 013207 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLF--HENKPSRSTLVKA-IEILRRHCLNDR 87 (447)
Q Consensus 11 ~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLf--d~~~ps~~~l~~~-~~~L~~l~~~~~ 87 (447)
.+||||.+||+|-. ...|.+++..+...++|+++++|||. +...+-. +.... .+.++
T Consensus 2 ~~mkil~vtDlHg~------------~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~-~~~~~~~e~l~------- 61 (226)
T COG2129 2 KKMKILAVTDLHGS------------EDSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEV-AEELNKLEALK------- 61 (226)
T ss_pred CcceEEEEeccccc------------hHHHHHHHHHHhhccCCEEEEecceehhhcCchHH-HHhhhHHHHHH-------
Confidence 47999999999965 46689999999999999999999998 6653322 21110 22232
Q ss_pred CcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcceeEE
Q 013207 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITV 167 (447)
Q Consensus 88 ~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~ 167 (447)
..++||++++||.|.+.-. +.+..++ ++..++. +++
T Consensus 62 ----------------------------~~~~~v~avpGNcD~~~v~------~~l~~~~-~~v~~~v---------~~i 97 (226)
T COG2129 62 ----------------------------ELGIPVLAVPGNCDPPEVI------DVLKNAG-VNVHGRV---------VEI 97 (226)
T ss_pred ----------------------------hcCCeEEEEcCCCChHHHH------HHHHhcc-cccccce---------EEe
Confidence 2489999999999987543 4555544 3444432 111
Q ss_pred EEEEEecCCeeEEEEecCCCCh--HHHHhhhcCh---hHHhhccchhhhhccccCceeEEEeecccccCCCC---Cccc-
Q 013207 168 YPILIRKGSTAVALYGLGNIRD--ERLNRMFQTP---HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPK---NAIN- 238 (447)
Q Consensus 168 ~Pi~l~~g~~~vaiyGl~~~~~--~~l~~~~~~~---~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~---~~i~- 238 (447)
+ .+.+.|+|+... -...+.|.+. ..++++-... ....+|++.|.+..+..-. .+..
T Consensus 98 -------~--~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~------~~~~~Il~~HaPP~gt~~d~~~g~~hv 162 (226)
T COG2129 98 -------G--GYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKA------DNPVNILLTHAPPYGTLLDTPSGYVHV 162 (226)
T ss_pred -------c--CcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhcc------cCcceEEEecCCCCCccccCCCCcccc
Confidence 1 233444433211 0000111110 1222222111 1223499999998654211 1111
Q ss_pred -----ccccccCCc--EEEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEEEEeCCeeEEEE
Q 013207 239 -----EHFLPRFLD--FVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTK 306 (447)
Q Consensus 239 -----~~~~~~~~D--~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~~~~~~~~~ 306 (447)
..++ ..++ +.++||+|+.+.. . ..+++.+++||+ + +..+++++++.+..++.+.
T Consensus 163 GS~~vr~~i-eefqP~l~i~GHIHEs~G~-d--~iG~TivVNPG~-----~-----~~g~yA~i~l~~~~Vk~~~ 223 (226)
T COG2129 163 GSKAVRKLI-EEFQPLLGLHGHIHESRGI-D--KIGNTIVVNPGP-----L-----GEGRYALIELEKEVVKLEQ 223 (226)
T ss_pred chHHHHHHH-HHhCCceEEEeeecccccc-c--ccCCeEEECCCC-----c-----cCceEEEEEecCcEEEEEE
Confidence 0111 1244 9999999986542 2 234678999998 2 3457999999988665544
No 26
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.47 E-value=1.2e-12 Score=127.74 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=36.3
Q ss_pred EEEEcCCCCCCCCCcccccccHHHH-HHHHHHHHHHcCCCEEEEcCCCCCCCCC
Q 013207 15 ILVATDCHLGYMEKDEIRRHDSFEA-FEEICSIAEQKEVDFVLLGGDLFHENKP 67 (447)
Q Consensus 15 ILh~SD~HLG~~~~~~~r~~d~~~~-feeil~~a~~~~vD~VliaGDLfd~~~p 67 (447)
|+|+||+|+|..... .... .+.+++.+++.++|+|+++||++|....
T Consensus 2 ~~~iSDlH~g~~~~~------~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~ 49 (256)
T cd07401 2 FVHISDIHVSSFHPP------NRAQDETFCSNFIDVIKPALVLATGDLTDNKTG 49 (256)
T ss_pred EEEecccccCCcCch------hhhhHHHHHHHHHHhhCCCEEEEcccccccccc
Confidence 799999999965321 1122 3678888889999999999999997753
No 27
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.47 E-value=4.4e-14 Score=124.21 Aligned_cols=80 Identities=36% Similarity=0.538 Sum_probs=58.5
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCccee
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~ 92 (447)
|||+++||+|++..... . .+..+...+.+.++|+||++||+++....+..............
T Consensus 1 ~ri~~isD~H~~~~~~~-------~-~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~---------- 62 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDS-------D-AFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLL---------- 62 (200)
T ss_dssp EEEEEEEBBTTTHHHHC-------H-HHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHH----------
T ss_pred CeEEEEcCCCCCCcchh-------H-HHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhh----------
Confidence 89999999999864321 3 56788888999999999999999999876655433221011111
Q ss_pred eechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCC
Q 013207 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (447)
Q Consensus 93 ~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~ 133 (447)
...+|+++++||||....
T Consensus 63 -----------------------~~~~~~~~~~GNHD~~~~ 80 (200)
T PF00149_consen 63 -----------------------NPKIPVYFILGNHDYYSG 80 (200)
T ss_dssp -----------------------HTTTTEEEEE-TTSSHHH
T ss_pred -----------------------hcccccccccccccccee
Confidence 357899999999999754
No 28
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.46 E-value=2.7e-12 Score=122.04 Aligned_cols=80 Identities=23% Similarity=0.223 Sum_probs=60.0
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCccee
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~ 92 (447)
+||+++||+|.+.... .......++++++.+.+.++|+|+++||+++.... ......+.++++++.
T Consensus 1 f~~~~~~D~q~~~~~~----~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~-~~~~~~~~~~~~~l~--------- 66 (214)
T cd07399 1 FTLAVLPDTQYYTESY----PEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDN-DAEWEAADKAFARLD--------- 66 (214)
T ss_pred CEEEEecCCCcCCcCC----HHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCC-HHHHHHHHHHHHHHH---------
Confidence 6899999999975521 12223467889999999999999999999997752 333444556666641
Q ss_pred eechhhhcccccccccccCCCCCCCCCcEEEECCCCC
Q 013207 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHD 129 (447)
Q Consensus 93 ~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD 129 (447)
+.++|+++++||||
T Consensus 67 -----------------------~~~~p~~~~~GNHD 80 (214)
T cd07399 67 -----------------------KAGIPYSVLAGNHD 80 (214)
T ss_pred -----------------------HcCCcEEEECCCCc
Confidence 24799999999999
No 29
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.41 E-value=1.8e-12 Score=125.10 Aligned_cols=74 Identities=24% Similarity=0.367 Sum_probs=53.9
Q ss_pred EEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcceee
Q 013207 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQV 93 (447)
Q Consensus 14 rILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~ 93 (447)
||+++||+|++.... +....++.+++.+.+.++|+|+++||+++... .....++.|++.
T Consensus 1 ki~~iSDlH~~~~~~------~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~~----~~~~~~~~l~~~----------- 59 (239)
T TIGR03729 1 KIAFSSDLHIDLNHF------DTEEMLETLAQYLKKQKIDHLHIAGDISNDFQ----RSLPFIEKLQEL----------- 59 (239)
T ss_pred CEEEEEeecCCCCCC------CHHHHHHHHHHHHHhcCCCEEEECCccccchh----hHHHHHHHHHHh-----------
Confidence 799999999974321 22346888999998999999999999998641 112233333331
Q ss_pred echhhhcccccccccccCCCCCCCCCcEEEECCCCCCC
Q 013207 94 VSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (447)
Q Consensus 94 lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~ 131 (447)
.++||++|+||||..
T Consensus 60 -----------------------~~~pv~~v~GNHD~~ 74 (239)
T TIGR03729 60 -----------------------KGIKVTFNAGNHDML 74 (239)
T ss_pred -----------------------cCCcEEEECCCCCCC
Confidence 358999999999986
No 30
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.41 E-value=4.2e-12 Score=122.77 Aligned_cols=81 Identities=23% Similarity=0.292 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCC---CHHHHHHHHHHHHHhhcCCCCc
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP---SRSTLVKAIEILRRHCLNDRPV 89 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~p---s~~~l~~~~~~L~~l~~~~~~~ 89 (447)
|||+|+||+|+|.... +..++|.+.++. .+.+||+|+++||+||.... .......+.++|+++.
T Consensus 1 M~i~~iSDlHl~~~~~------~~~~~~~~~l~~-~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~------ 67 (241)
T PRK05340 1 MPTLFISDLHLSPERP------AITAAFLRFLRG-EARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALS------ 67 (241)
T ss_pred CcEEEEeecCCCCCCh------hHHHHHHHHHHh-hhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHH------
Confidence 8999999999996421 223445555533 45689999999999985321 1122334456666652
Q ss_pred ceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCC
Q 013207 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (447)
Q Consensus 90 ~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~ 132 (447)
..++||++|+||||...
T Consensus 68 --------------------------~~g~~v~~v~GNHD~~~ 84 (241)
T PRK05340 68 --------------------------DSGVPCYFMHGNRDFLL 84 (241)
T ss_pred --------------------------HcCCeEEEEeCCCchhh
Confidence 34689999999999754
No 31
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.41 E-value=2.6e-12 Score=126.91 Aligned_cols=93 Identities=22% Similarity=0.264 Sum_probs=63.8
Q ss_pred CCCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCC-CCCCHHHHHHHHHHHHHhhcCCC
Q 013207 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHE-NKPSRSTLVKAIEILRRHCLNDR 87 (447)
Q Consensus 9 ~~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~-~~ps~~~l~~~~~~L~~l~~~~~ 87 (447)
.....||+|+||+|..... ....+.+.....+.+|+|+++||+++. ..+.... .++.|+++
T Consensus 41 ~~~~~~iv~lSDlH~~~~~----------~~~~~~~~~i~~~~~DlivltGD~~~~~~~~~~~~---~~~~L~~L----- 102 (284)
T COG1408 41 SLQGLKIVQLSDLHSLPFR----------EEKLALLIAIANELPDLIVLTGDYVDGDRPPGVAA---LALFLAKL----- 102 (284)
T ss_pred ccCCeEEEEeehhhhchhh----------HHHHHHHHHHHhcCCCEEEEEeeeecCCCCCCHHH---HHHHHHhh-----
Confidence 3467899999999987532 223334444445566999999999996 4444433 56667765
Q ss_pred CcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCC
Q 013207 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACN 147 (447)
Q Consensus 88 ~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g 147 (447)
....+||+|.||||..........-++++..+
T Consensus 103 ----------------------------~~~~gv~av~GNHd~~~~~~~~~~~~l~~~~~ 134 (284)
T COG1408 103 ----------------------------KAPLGVFAVLGNHDYGVDRSNVYIGDLLEELG 134 (284)
T ss_pred ----------------------------hccCCEEEEecccccccccccchhhhhhhhcc
Confidence 45789999999999987764333335666555
No 32
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=99.37 E-value=1.1e-11 Score=113.55 Aligned_cols=85 Identities=18% Similarity=0.227 Sum_probs=54.9
Q ss_pred CceeEEEeecccccCCCCCccccc-ccccCCcEEEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEE
Q 013207 217 DWFNILVLHQNRVKTNPKNAINEH-FLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLL 295 (447)
Q Consensus 217 ~~~~Ill~H~~~~~~~~~~~i~~~-~~~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lv 295 (447)
+..+|++.|+............+. ....++|.+++||+|.+... +. ++..+++|||+..... ..+++++++
T Consensus 80 ~g~ki~l~HGh~~~~~~~~~~l~~la~~~~~Dvli~GHTH~p~~~--~~--~~i~~vNPGS~s~pr~----~~~~sy~il 151 (172)
T COG0622 80 GGVKIFLTHGHLYFVKTDLSLLEYLAKELGADVLIFGHTHKPVAE--KV--GGILLVNPGSVSGPRG----GNPASYAIL 151 (172)
T ss_pred CCEEEEEECCCccccccCHHHHHHHHHhcCCCEEEECCCCcccEE--EE--CCEEEEcCCCcCCCCC----CCCcEEEEE
Confidence 456788888754321100001011 11246999999999997653 33 3478999999876653 246799999
Q ss_pred EEeCCeeEEEEEEC
Q 013207 296 EIKENQYRPTKIPL 309 (447)
Q Consensus 296 ei~~~~~~~~~i~L 309 (447)
++++.+++...+..
T Consensus 152 ~~~~~~~~~~~~~~ 165 (172)
T COG0622 152 DVDNLEVEVLFLER 165 (172)
T ss_pred EcCCCEEEEEEeec
Confidence 99988876665544
No 33
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.30 E-value=1.5e-11 Score=118.15 Aligned_cols=78 Identities=23% Similarity=0.313 Sum_probs=49.0
Q ss_pred EEEEcCCCCCCCCCcccccccHHH-HHHHHHHHHHHcCCCEEEEcCCCCCCCC---CCHHHHHHHHHHHHHhhcCCCCcc
Q 013207 15 ILVATDCHLGYMEKDEIRRHDSFE-AFEEICSIAEQKEVDFVLLGGDLFHENK---PSRSTLVKAIEILRRHCLNDRPVQ 90 (447)
Q Consensus 15 ILh~SD~HLG~~~~~~~r~~d~~~-~feeil~~a~~~~vD~VliaGDLfd~~~---ps~~~l~~~~~~L~~l~~~~~~~~ 90 (447)
.+++||+|+|.... +..+ .++.+.+.+. +||+|+++||+||... ........+.+.|+++.
T Consensus 1 ~~~iSDlHl~~~~~------~~~~~~l~~l~~~~~--~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~------- 65 (231)
T TIGR01854 1 TLFISDLHLSPERP------DITALFLDFLREEAR--KADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVS------- 65 (231)
T ss_pred CeEEEecCCCCCCh------hHHHHHHHHHHhhhc--cCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHH-------
Confidence 37999999996421 1122 2333333332 8999999999999532 11222234455566542
Q ss_pred eeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCC
Q 013207 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (447)
Q Consensus 91 ~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~ 132 (447)
..++||++|+||||...
T Consensus 66 -------------------------~~~~~v~~v~GNHD~~~ 82 (231)
T TIGR01854 66 -------------------------DQGVPCYFMHGNRDFLI 82 (231)
T ss_pred -------------------------HCCCeEEEEcCCCchhh
Confidence 24689999999999853
No 34
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.28 E-value=1.7e-10 Score=114.22 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=55.6
Q ss_pred CCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCC-HHHHHHHHHHHHHhhcCCCC
Q 013207 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPS-RSTLVKAIEILRRHCLNDRP 88 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps-~~~l~~~~~~L~~l~~~~~~ 88 (447)
...+||++++|+|.+.. .+..+++.+.+. ..++|+||++||+.+..... .......++.++.+
T Consensus 2 ~~~~~f~v~gD~~~~~~--------~~~~~~~~l~~~--~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~------ 65 (294)
T cd00839 2 DTPFKFAVFGDMGQNTN--------NSTNTLDHLEKE--LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPL------ 65 (294)
T ss_pred CCcEEEEEEEECCCCCC--------CcHHHHHHHHhc--cCCccEEEEcCchhhhcCCccchhHHHHHHHHHHH------
Confidence 35699999999998621 234555555544 47999999999998654322 12233344555543
Q ss_pred cceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCC
Q 013207 89 VQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGV 134 (447)
Q Consensus 89 ~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~ 134 (447)
...+|+++++||||.....
T Consensus 66 ---------------------------~~~~P~~~~~GNHD~~~~~ 84 (294)
T cd00839 66 ---------------------------ASYVPYMVTPGNHEADYNF 84 (294)
T ss_pred ---------------------------HhcCCcEEcCcccccccCC
Confidence 2368999999999986543
No 35
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.28 E-value=3.9e-11 Score=112.35 Aligned_cols=228 Identities=21% Similarity=0.366 Sum_probs=101.0
Q ss_pred ceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcce
Q 013207 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (447)
Q Consensus 12 ~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~ 91 (447)
+=|||.+||.|-. +..++.++..+.+.++|+|+++|||.-....+.+ ..+....+..|-+=
T Consensus 5 ~~kilA~s~~~g~------------~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e-------~~~a~~~~r~p~k~ 65 (255)
T PF14582_consen 5 VRKILAISNFRGD------------FELLERLVEVIPEKGPDAVVFVGDLLKAEARSDE-------YERAQEEQREPDKS 65 (255)
T ss_dssp --EEEEEE--TT-------------HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHH-------HHHHHHTT----TH
T ss_pred chhheeecCcchH------------HHHHHHHHhhccccCCCEEEEeccccccchhhhH-------HHHHhhhccCcchh
Confidence 4589999999943 6789999999999999999999999765422221 11111011001000
Q ss_pred eeechh---hhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhh----cCCceEEecceeccCCCcce
Q 013207 92 QVVSDQ---AVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILS----ACNLVNYFGKMVLGGSGVGE 164 (447)
Q Consensus 92 ~~lsd~---~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~----~~g~v~~fg~~~l~~~~~~~ 164 (447)
+++-+- .....+-|..++ ..++|+++||||||.|... ...+.+. .+++.++....
T Consensus 66 ~i~~e~~~~~e~~~~ff~~L~------~~~~p~~~vPG~~Dap~~~---~lr~a~~~e~v~p~~~~vH~sf--------- 127 (255)
T PF14582_consen 66 EINEEECYDSEALDKFFRILG------ELGVPVFVVPGNMDAPERF---FLREAYNAEIVTPHIHNVHESF--------- 127 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------CC-SEEEEE--TTS-SHHH---HHHHHHHCCCC-TTEEE-CTCE---------
T ss_pred hhhhhhhhhHHHHHHHHHHHH------hcCCcEEEecCCCCchHHH---HHHHHhccceeccceeeeeeee---------
Confidence 000000 000000011122 4689999999999998764 2222222 22222222211
Q ss_pred eEEEEEEEecCCeeEEEEecCCC-----C--hHHHH-hhhcChhHHhhccchhhhhccccCceeEEEeeccc-ccCC---
Q 013207 165 ITVYPILIRKGSTAVALYGLGNI-----R--DERLN-RMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNR-VKTN--- 232 (447)
Q Consensus 165 i~~~Pi~l~~g~~~vaiyGl~~~-----~--~~~l~-~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~-~~~~--- 232 (447)
...+ +...+.|+|-. + ...+. ..|...-.+++++. ..+...|+++|.+. .+-+
T Consensus 128 ------~~~~--g~y~v~G~GGeI~~~~~~~~~~LrYP~weaey~lk~l~e-------lk~~r~IlLfhtpPd~~kg~~h 192 (255)
T PF14582_consen 128 ------FFWK--GEYLVAGMGGEITDDQREEEFKLRYPAWEAEYSLKFLRE-------LKDYRKILLFHTPPDLHKGLIH 192 (255)
T ss_dssp ------EEET--TTEEEEEE-SEEESSS-BCSSS-EEEHHHHHHHHGGGGG-------CTSSEEEEEESS-BTBCTCTBT
T ss_pred ------cccC--CcEEEEecCccccCCCccccccccchHHHHHHHHHHHHh-------cccccEEEEEecCCccCCCccc
Confidence 1112 23444555421 1 11110 00000011233322 12568999999988 3222
Q ss_pred -CCCccccccc-ccCCcEEEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEEEEeCCeeEEE
Q 013207 233 -PKNAINEHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPT 305 (447)
Q Consensus 233 -~~~~i~~~~~-~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~~~~~~~~ 305 (447)
+...+ .+++ .-..++|++||.|+.... ..+ +...|++||| |++| .+++|++.+.++...
T Consensus 193 ~GS~~V-~dlIk~~~P~ivl~Ghihe~~~~-e~l--G~TlVVNPGs-----L~~G-----~yAvI~l~~~~v~~g 253 (255)
T PF14582_consen 193 VGSAAV-RDLIKTYNPDIVLCGHIHESHGK-ESL--GKTLVVNPGS-----LAEG-----DYAVIDLEQDKVEFG 253 (255)
T ss_dssp TSBHHH-HHHHHHH--SEEEE-SSS-EE---EEE--TTEEEEE--B-----GGGT-----EEEEEETTTTEEEEE
T ss_pred ccHHHH-HHHHHhcCCcEEEecccccchhh-HHh--CCEEEecCcc-----cccC-----ceeEEEecccccccC
Confidence 11111 1222 245789999999997642 222 4579999996 4433 689999988876543
No 36
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.28 E-value=8e-11 Score=113.05 Aligned_cols=66 Identities=27% Similarity=0.310 Sum_probs=46.2
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCccee
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~ 92 (447)
+||+++||+|..... ...+.+++.++|+|+++||+.+.. . +.++.|++
T Consensus 1 ~rIa~isDiHg~~~~--------------~~~~~l~~~~pD~Vl~~GDi~~~~---~----~~~~~l~~----------- 48 (238)
T cd07397 1 LRIAIVGDVHGQWDL--------------EDIKALHLLQPDLVLFVGDFGNES---V----QLVRAISS----------- 48 (238)
T ss_pred CEEEEEecCCCCchH--------------HHHHHHhccCCCEEEECCCCCcCh---H----HHHHHHHh-----------
Confidence 589999999965311 112455667899999999998643 1 23344443
Q ss_pred eechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCC
Q 013207 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGV 134 (447)
Q Consensus 93 ~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~ 134 (447)
...|+++|.||||.....
T Consensus 49 ------------------------l~~p~~~V~GNHD~~~~~ 66 (238)
T cd07397 49 ------------------------LPLPKAVILGNHDAWYDA 66 (238)
T ss_pred ------------------------CCCCeEEEcCCCcccccc
Confidence 246899999999986643
No 37
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.25 E-value=7.6e-11 Score=115.67 Aligned_cols=81 Identities=31% Similarity=0.416 Sum_probs=63.5
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCccee
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~ 92 (447)
|||+|+||+|++. ...+....++.+++.++..++|+|+++|||.+.. .......+.++|++.
T Consensus 1 ~~i~~isD~H~~~------~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~--~~~~~~~~~~~l~~~---------- 62 (301)
T COG1409 1 MRIAHISDLHLGA------LGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDG--EPEEYRRLKELLARL---------- 62 (301)
T ss_pred CeEEEEecCcccc------cccchHHHHHHHHHHHhcCCCCEEEEccCcCCCC--CHHHHHHHHHHHhhc----------
Confidence 7999999999995 2335567888999999999999999999999985 344445555666532
Q ss_pred eechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCC
Q 013207 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGV 134 (447)
Q Consensus 93 ~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~ 134 (447)
....|++++|||||.....
T Consensus 63 -----------------------~~~~~~~~vpGNHD~~~~~ 81 (301)
T COG1409 63 -----------------------ELPAPVIVVPGNHDARVVN 81 (301)
T ss_pred -----------------------cCCCceEeeCCCCcCCchH
Confidence 3478999999999997654
No 38
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.25 E-value=4.5e-10 Score=110.38 Aligned_cols=105 Identities=15% Similarity=0.180 Sum_probs=60.8
Q ss_pred hHHhhccchhhhhccccCceeEEEeecccccCCCCCc---cc---cccc-ccCCcEEEeccccCcccCCcccCCCCceEe
Q 013207 200 HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNA---IN---EHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLT 272 (447)
Q Consensus 200 ~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~---i~---~~~~-~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ 272 (447)
++++|++...... .....|++.|++....+.... .. ..++ ..++++|++||.|..+.... ...+...+
T Consensus 152 ~Q~~wL~~~L~~~---~~~~~iv~~H~P~~~~~~~~~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~~--~~~~~~~i 226 (277)
T cd07378 152 EQLAWLEKTLAAS---TADWKIVVGHHPIYSSGEHGPTSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIKD--DGSGTSFV 226 (277)
T ss_pred HHHHHHHHHHHhc---CCCeEEEEeCccceeCCCCCCcHHHHHHHHHHHHHcCCCEEEeCCcccceeeec--CCCCcEEE
Confidence 5677877665432 235789999998854322111 11 1122 34689999999998654311 11134444
Q ss_pred ccCCcccc--ccc----------cCccCCceEEEEEEeCCeeEEEEEEC
Q 013207 273 QPGSSVAT--SLI----------EGESKPKHVLLLEIKENQYRPTKIPL 309 (447)
Q Consensus 273 ypGS~~~~--s~~----------e~E~~~Kg~~lvei~~~~~~~~~i~L 309 (447)
-+|+.... ... .......|+..++|.++.+.++++..
T Consensus 227 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~i~v~~~~l~~~~~~~ 275 (277)
T cd07378 227 VSGAGSKARPSVKHIDKVPQFFSGFTSSGGGFAYLELTKEELTVRFYDA 275 (277)
T ss_pred EeCCCcccCCCCCccCcccccccccccCCCCEEEEEEecCEEEEEEECC
Confidence 55543321 110 01124579999999999888887754
No 39
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.16 E-value=9.8e-11 Score=106.41 Aligned_cols=68 Identities=22% Similarity=0.289 Sum_probs=45.8
Q ss_pred EEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcceeee
Q 013207 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVV 94 (447)
Q Consensus 15 ILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~l 94 (447)
|+++||+|++...... .+.+.+.+.++|+|+++||+++........ .+++..
T Consensus 1 ~~~iSDlH~~~~~~~~-----------~~~~~~~~~~~d~li~~GDi~~~~~~~~~~-----~~~~~~------------ 52 (166)
T cd07404 1 IQYLSDLHLEFEDNLA-----------DLLNFPIAPDADILVLAGDIGYLTDAPRFA-----PLLLAL------------ 52 (166)
T ss_pred CceEccccccCccccc-----------cccccCCCCCCCEEEECCCCCCCcchHHHH-----HHHHhh------------
Confidence 5789999998643211 011445678999999999999976443221 122211
Q ss_pred chhhhcccccccccccCCCCCCCCCcEEEECCCCCCC
Q 013207 95 SDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (447)
Q Consensus 95 sd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~ 131 (447)
....||++|+||||..
T Consensus 53 ---------------------~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 53 ---------------------KGFEPVIYVPGNHEFY 68 (166)
T ss_pred ---------------------cCCccEEEeCCCcceE
Confidence 3468999999999986
No 40
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=99.14 E-value=9.7e-10 Score=106.57 Aligned_cols=212 Identities=19% Similarity=0.259 Sum_probs=110.5
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCCCCCHH-HHHHHHHHHHHhhcCCCCcc
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHENKPSRS-TLVKAIEILRRHCLNDRPVQ 90 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD-~VliaGDLfd~~~ps~~-~l~~~~~~L~~l~~~~~~~~ 90 (447)
++|+|+||+| |....- -....+..+..+++..+++++| +++.+||+++....+.. .....++.|+.
T Consensus 1 l~i~~~sD~h-g~~~~~--~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~--------- 68 (252)
T cd00845 1 LTILHTNDLH-GHFEPA--GGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNA--------- 68 (252)
T ss_pred CEEEEecccc-cCcccc--CCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHh---------
Confidence 5899999999 543210 1112356788899999988999 77899999998765431 11122334432
Q ss_pred eeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEeccee-ccCCCcceeEEEE
Q 013207 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMV-LGGSGVGEITVYP 169 (447)
Q Consensus 91 ~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~-l~~~~~~~i~~~P 169 (447)
.+. .+++.||||...+.. ...+.+...+.. +++... ..+.....-...|
T Consensus 69 --------------------------~g~-d~~~~GNHe~d~g~~--~l~~~~~~~~~~-~l~aNv~~~~~~~~~~~~~~ 118 (252)
T cd00845 69 --------------------------LGY-DAVTIGNHEFDYGLD--ALAELYKDANFP-VLSANLYDKDTGTGPPWAKP 118 (252)
T ss_pred --------------------------cCC-CEEeeccccccccHH--HHHHHHHhCCCC-EEEEeeeccCCCCCCCCcCC
Confidence 233 345569999865543 233445554431 111100 0000000001223
Q ss_pred -EEEecCCeeEEEEecCCCChHHHH-------hhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCCCcccccc
Q 013207 170 -ILIRKGSTAVALYGLGNIRDERLN-------RMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHF 241 (447)
Q Consensus 170 -i~l~~g~~~vaiyGl~~~~~~~l~-------~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~i~~~~ 241 (447)
..++.++.+|++.|+......... -.+.. ..+.++.... .......+.|++.|...... ..+.+.
T Consensus 119 ~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~D~vIvl~H~g~~~~---~~la~~- 191 (252)
T cd00845 119 YKIIEVDGVKIGVIGLTTPDTPTYTPLGWIIGLPFED--LAEAVAVAEE-LLAEGADVIILLSHLGLDDD---EELAEE- 191 (252)
T ss_pred eEEEEECCEEEEEEEeccccceeecCCCcccCceecC--HHHHHHHHHH-HHhCCCCEEEEEeccCccch---HHHHhc-
Confidence 244567789999998533211100 00000 0111100000 00123578999999876321 011111
Q ss_pred cccCCcEEEeccccCcccCCcccCCCCceEeccCC
Q 013207 242 LPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (447)
Q Consensus 242 ~~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS 276 (447)
+ .++|+|+.||.|..+..+.. ..+..++|+|+
T Consensus 192 ~-~giDlvlggH~H~~~~~~~~--~~~~~v~~~g~ 223 (252)
T cd00845 192 V-PGIDVILGGHTHHLLEEPEV--VNGTLIVQAGK 223 (252)
T ss_pred C-CCccEEEcCCcCcccCCCcc--cCCEEEEeCCh
Confidence 2 57999999999997643322 23567788875
No 41
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=99.12 E-value=1.4e-10 Score=106.34 Aligned_cols=84 Identities=26% Similarity=0.339 Sum_probs=59.5
Q ss_pred EEEcCCCCCCCCC----c-ccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcc
Q 013207 16 LVATDCHLGYMEK----D-EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (447)
Q Consensus 16 Lh~SD~HLG~~~~----~-~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~ 90 (447)
|++||+|||+... + .....+..++++.+.+.+.+.++|.|+++||+||...+...........+...
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~-------- 72 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEVAFLRLL-------- 72 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHHHHHHhc--------
Confidence 5899999998642 2 12333445789999999999999999999999998765443322222222211
Q ss_pred eeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCC
Q 013207 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (447)
Q Consensus 91 ~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~ 132 (447)
..++||++|.||||...
T Consensus 73 -------------------------~~~~~v~~i~GNHD~~~ 89 (172)
T cd07391 73 -------------------------AKDVDVILIRGNHDGGL 89 (172)
T ss_pred -------------------------cCCCeEEEEcccCccch
Confidence 35789999999999853
No 42
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.11 E-value=4.5e-10 Score=98.73 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=33.3
Q ss_pred EEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHH
Q 013207 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (447)
Q Consensus 14 rILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~ 81 (447)
||+++||+|.... .....++|+|+++||+++...+ ..+..+.++|++
T Consensus 1 ~i~~isD~H~~~~-------------------~~~~~~~D~vi~~GD~~~~~~~--~~~~~~~~~l~~ 47 (135)
T cd07379 1 RFVCISDTHSRHR-------------------TISIPDGDVLIHAGDLTERGTL--EELQKFLDWLKS 47 (135)
T ss_pred CEEEEeCCCCCCC-------------------cCcCCCCCEEEECCCCCCCCCH--HHHHHHHHHHHh
Confidence 6899999997632 1234689999999999987643 334445566664
No 43
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=99.07 E-value=1.3e-09 Score=105.40 Aligned_cols=43 Identities=26% Similarity=0.448 Sum_probs=29.2
Q ss_pred EEEcCCCCCCCCCcccccccHHHHHHHHHHHHHH-----cCCCEEEEcCCCCCCC
Q 013207 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ-----KEVDFVLLGGDLFHEN 65 (447)
Q Consensus 16 Lh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~-----~~vD~VliaGDLfd~~ 65 (447)
+++||+|+|....+ .+ .++.+++.... .++|.|+++||+||..
T Consensus 2 ~~iSDlHl~~~~~~----~~---~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~ 49 (243)
T cd07386 2 VFISDVHVGSKTFL----ED---AFEKFVRWLNGEDDSASRVKYLIIAGDLVDGI 49 (243)
T ss_pred EEecccCCCchhhh----HH---HHHHHHHHHcCCcccccCccEEEEeCCccccc
Confidence 68999999875421 12 23444444333 3679999999999984
No 44
>PRK04036 DNA polymerase II small subunit; Validated
Probab=99.06 E-value=9.1e-09 Score=109.72 Aligned_cols=83 Identities=24% Similarity=0.374 Sum_probs=57.0
Q ss_pred CCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHH---------HcCCCEEEEcCCCCCCCC--CCH---------
Q 013207 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE---------QKEVDFVLLGGDLFHENK--PSR--------- 69 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~---------~~~vD~VliaGDLfd~~~--ps~--------- 69 (447)
...++|+++||+|+|.... ....|+.+++... +.++|.|+++||+++... |..
T Consensus 241 ~~~~~i~~ISDlHlgs~~~-------~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~ 313 (504)
T PRK04036 241 DEKVYAVFISDVHVGSKEF-------LEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDI 313 (504)
T ss_pred CCccEEEEEcccCCCCcch-------hHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhh
Confidence 4558999999999997532 1234555555555 778999999999999632 211
Q ss_pred -HHHHHHHHHHHHhhcCCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCC
Q 013207 70 -STLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (447)
Q Consensus 70 -~~l~~~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~ 132 (447)
..+..+.++|+++ ...+||++++||||...
T Consensus 314 ~~~~~~l~~~L~~L---------------------------------~~~i~V~~ipGNHD~~~ 344 (504)
T PRK04036 314 YEQYEAAAEYLKQI---------------------------------PEDIKIIISPGNHDAVR 344 (504)
T ss_pred HHHHHHHHHHHHhh---------------------------------hcCCeEEEecCCCcchh
Confidence 1123345556554 24789999999999754
No 45
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=99.01 E-value=6.5e-10 Score=106.50 Aligned_cols=83 Identities=27% Similarity=0.292 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCCCCCC----cc-cccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCC
Q 013207 13 VRILVATDCHLGYMEK----DE-IRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDR 87 (447)
Q Consensus 13 mrILh~SD~HLG~~~~----~~-~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~ 87 (447)
-+.|++||+|||+... +. ....+..++++.+.+++.+.++|.|+++||++|...+. .+...+.++|+++
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~-~~~~~~~~~l~~~----- 88 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKG-LEWRFIREFIEVT----- 88 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCCh-HHHHHHHHHHHhc-----
Confidence 4689999999998542 21 12224457889999999999999999999999987654 4444455566642
Q ss_pred CcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCC
Q 013207 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (447)
Q Consensus 88 ~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~ 131 (447)
..++++|+||||..
T Consensus 89 ------------------------------~~~v~~V~GNHD~~ 102 (225)
T TIGR00024 89 ------------------------------FRDLILIRGNHDAL 102 (225)
T ss_pred ------------------------------CCcEEEECCCCCCc
Confidence 35899999999974
No 46
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=99.01 E-value=1.2e-08 Score=100.64 Aligned_cols=216 Identities=18% Similarity=0.284 Sum_probs=109.3
Q ss_pred eEEEEEcCCCCCCCCC-cc----cccccHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCCCCCHHH-------HHHHHHHH
Q 013207 13 VRILVATDCHLGYMEK-DE----IRRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRST-------LVKAIEIL 79 (447)
Q Consensus 13 mrILh~SD~HLG~~~~-~~----~r~~d~~~~feeil~~a~~~~vD~Vli-aGDLfd~~~ps~~~-------l~~~~~~L 79 (447)
++|+|++|+| |+... +. ....-.+..+..+++..+++++|.|++ +||+|+....+... -...++.|
T Consensus 1 l~il~t~D~H-g~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~l 79 (277)
T cd07410 1 LRILATSDLH-GNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAM 79 (277)
T ss_pred CeEEEEeccc-cceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHH
Confidence 5899999999 65431 10 001123566788999999889999998 99999965211110 01133444
Q ss_pred HHhhcCCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceec-c
Q 013207 80 RRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVL-G 158 (447)
Q Consensus 80 ~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l-~ 158 (447)
+. .+.. ++..||||.-.+.. ...+.+..+++- +++.... .
T Consensus 80 n~-----------------------------------~g~d-~~~lGNHe~d~g~~--~l~~~~~~~~~~-~l~aNv~~~ 120 (277)
T cd07410 80 NA-----------------------------------LGYD-AGTLGNHEFNYGLD--YLDKVIKQANFP-VLSANVIDA 120 (277)
T ss_pred Hh-----------------------------------cCCC-EEeecccCcccCHH--HHHHHHHhCCCC-EEEEEEEeC
Confidence 43 2444 45569999765443 233445544431 1111100 0
Q ss_pred CCCcceeEEEEE-EEecC-CeeEEEEecCCCC------hHHHH-hhhcCh-hHHhhccchhhhhccccCceeEEEeeccc
Q 013207 159 GSGVGEITVYPI-LIRKG-STAVALYGLGNIR------DERLN-RMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNR 228 (447)
Q Consensus 159 ~~~~~~i~~~Pi-~l~~g-~~~vaiyGl~~~~------~~~l~-~~~~~~-~~v~~l~p~~~~~~~~~~~~~Ill~H~~~ 228 (447)
... .-.+.|. +++.+ +.+|++.|+-... +.... -.+.+. +.++...+...+ ....+-|++.|...
T Consensus 121 ~~~--~~~~~~~~i~~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~IIvl~H~g~ 195 (277)
T cd07410 121 DTG--EPFLKPYVILERDVGVKVGIIGLTTPQIPNWEKPNLIGGLKFTDPVETAKKYVPKLRA---EGADVVVVLAHGGF 195 (277)
T ss_pred CCC--CcccCCEEEEEecCCCEEEEEecCCcccccccCcccCCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEecCCc
Confidence 000 0113453 44667 8899999974221 10000 001110 111111111111 12458899999866
Q ss_pred ccCCCCCccc----ccccc--cCCcEEEeccccCcccCCcccCCCCceEeccCC
Q 013207 229 VKTNPKNAIN----EHFLP--RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (447)
Q Consensus 229 ~~~~~~~~i~----~~~~~--~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS 276 (447)
.......... ..+.. .++|+|+.||.|.....+ ...+..++++|+
T Consensus 196 ~~~~~~~~~~~~~~~~la~~~~~vD~IlgGHsH~~~~~~---~~~~~~v~q~g~ 246 (277)
T cd07410 196 ERDLEESLTGENAAYELAEEVPGIDAILTGHQHRRFPGP---TVNGVPVVQPGN 246 (277)
T ss_pred CCCcccccCCccHHHHHHhcCCCCcEEEeCCCccccccC---CcCCEEEEcCCh
Confidence 4321000000 11211 469999999999865321 123467777774
No 47
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.01 E-value=2.9e-08 Score=97.95 Aligned_cols=99 Identities=18% Similarity=0.346 Sum_probs=63.8
Q ss_pred CCCCCCCceEEEEEcCCCCCCCCC----cccccc----cHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHH
Q 013207 5 PREDIANTVRILVATDCHLGYMEK----DEIRRH----DSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAI 76 (447)
Q Consensus 5 ~~~~~~~~mrILh~SD~HLG~~~~----~~~r~~----d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~ 76 (447)
.+..+.+++||+.+||+|+|.... +..-.+ .-.+|-..+-+....|+||+|+++||+.... ....+..-.|
T Consensus 46 lr~~~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~-~t~Da~~sl~ 124 (379)
T KOG1432|consen 46 LRFREDGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGH-STQDAATSLM 124 (379)
T ss_pred eeecCCCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCccccc-ccHhHHHHHH
Confidence 455677889999999999997622 111111 0123334445556679999999999998873 2222222222
Q ss_pred HHHHHhhcCCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCc
Q 013207 77 EILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDN 136 (447)
Q Consensus 77 ~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~ 136 (447)
+.+.-. .+.+||+.++-||||+.+....
T Consensus 125 kAvaP~--------------------------------I~~~IPwA~~lGNHDdes~ltr 152 (379)
T KOG1432|consen 125 KAVAPA--------------------------------IDRKIPWAAVLGNHDDESDLTR 152 (379)
T ss_pred HHhhhH--------------------------------hhcCCCeEEEecccccccccCH
Confidence 222221 2569999999999999887653
No 48
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=99.00 E-value=1.3e-08 Score=99.40 Aligned_cols=211 Identities=18% Similarity=0.217 Sum_probs=107.6
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCCCCCHHH-HHHHHHHHHHhhcCCCCcc
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHENKPSRST-LVKAIEILRRHCLNDRPVQ 90 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD-~VliaGDLfd~~~ps~~~-l~~~~~~L~~l~~~~~~~~ 90 (447)
++|||++|+| +..... ....-.+..+..+++..+++++| ++|.+||+|+.+..+... -...++.|+.+
T Consensus 1 ~~il~~nd~~-~~~~~~-~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l-------- 70 (257)
T cd07406 1 FTILHFNDVY-EIAPLD-GGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNAL-------- 70 (257)
T ss_pred CeEEEEccce-eecccC-CCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhc--------
Confidence 5899999999 432210 01111356678888888888888 999999999865322110 01233444432
Q ss_pred eeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecce-eccC--CCcceeEE
Q 013207 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKM-VLGG--SGVGEITV 167 (447)
Q Consensus 91 ~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~-~l~~--~~~~~i~~ 167 (447)
+. -+++.||||...+.. ....++..+++- +++.. .... ..+..+ -
T Consensus 71 ---------------------------~~-d~~~~GNHefd~g~~--~l~~~~~~~~~~-~L~aNi~~~~~~~~~~~~-~ 118 (257)
T cd07406 71 ---------------------------GV-DLACFGNHEFDFGED--QLQKRLGESKFP-WLSSNVFDATGGGPLPNG-K 118 (257)
T ss_pred ---------------------------CC-cEEeecccccccCHH--HHHHHHhhCCCC-EEEEEEEECCCCcccCCC-C
Confidence 32 366789999865543 233445544431 12111 0000 000001 0
Q ss_pred EEEEEecCCeeEEEEecCCCChH-HHH-----hhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCCCcccccc
Q 013207 168 YPILIRKGSTAVALYGLGNIRDE-RLN-----RMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHF 241 (447)
Q Consensus 168 ~Pi~l~~g~~~vaiyGl~~~~~~-~l~-----~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~i~~~~ 241 (447)
....++.++.+|++.|+-..... .+. -.|.+ .++.++.............-|++.|..... ...+-+.
T Consensus 119 ~~~i~~~~g~kIgviG~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~v~~~~~~~~D~iVvl~H~g~~~---d~~la~~- 192 (257)
T cd07406 119 ESAIIERAGVKIGLLGLVEEEWLETLTIDPEYVRYRD--YVETARELVDELREQGADLIIALTHMRLPN---DKRLARE- 192 (257)
T ss_pred CeEEEEECCeEEEEEEEecccccccccCCCCcceEcC--HHHHHHHHHHHHHhCCCCEEEEEeccCchh---hHHHHHh-
Confidence 12445667889999998432110 000 00111 111111100000011246789999986421 1112122
Q ss_pred cccCCcEEEeccccCcccCCcccCCCCceEeccCC
Q 013207 242 LPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (447)
Q Consensus 242 ~~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS 276 (447)
+ .++|+|+.||.|..+. ... .+..++++|+
T Consensus 193 ~-~~iD~IlgGH~H~~~~--~~~--~~t~vv~~g~ 222 (257)
T cd07406 193 V-PEIDLILGGHDHEYIL--VQV--GGTPIVKSGS 222 (257)
T ss_pred C-CCCceEEecccceeEe--eeE--CCEEEEeCCc
Confidence 2 4699999999999763 222 3467777774
No 49
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=99.00 E-value=4.3e-09 Score=96.21 Aligned_cols=77 Identities=26% Similarity=0.249 Sum_probs=48.8
Q ss_pred EEEcCCCCCCCCCc--cccc-ccHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcc
Q 013207 16 LVATDCHLGYMEKD--EIRR-HDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (447)
Q Consensus 16 Lh~SD~HLG~~~~~--~~r~-~d~~~~feeil~~a~~~--~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~ 90 (447)
.++||+|+|....- +.+. ...-...+.+++...+. ++|.|+++||+++...+... .+.|++
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~~~-----~~~l~~--------- 67 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAGTE-----LELLSR--------- 67 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChHHH-----HHHHHh---------
Confidence 46899999985310 0111 11112235556555553 79999999999998754321 344543
Q ss_pred eeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCC
Q 013207 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (447)
Q Consensus 91 ~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~ 132 (447)
.+.|+++|+||||...
T Consensus 68 --------------------------~~~~~~~v~GNHD~~~ 83 (168)
T cd07390 68 --------------------------LNGRKHLIKGNHDSSL 83 (168)
T ss_pred --------------------------CCCCeEEEeCCCCchh
Confidence 2468999999999754
No 50
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.91 E-value=4.7e-08 Score=95.86 Aligned_cols=215 Identities=17% Similarity=0.183 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCCCCCCccc----------ccccHHHHHHHHHHHHHHc-CCCEEE-EcCCCCCCCCCCHHH-HHHHHHHH
Q 013207 13 VRILVATDCHLGYMEKDEI----------RRHDSFEAFEEICSIAEQK-EVDFVL-LGGDLFHENKPSRST-LVKAIEIL 79 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~----------r~~d~~~~feeil~~a~~~-~vD~Vl-iaGDLfd~~~ps~~~-l~~~~~~L 79 (447)
++|||++|+|--....... ...--+..+..+++.+++. ++|.++ .+||+|+.+..+... -...++.|
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~l 80 (264)
T cd07411 1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAERNPNTLLLDGGDTWQGSGEALYTRGQAMVDAL 80 (264)
T ss_pred CEEEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhcCCCeEEEeCCCccCCChHHhhcCChhHHHHH
Confidence 4799999999765432111 0111356788899998888 999885 599999876332110 01122333
Q ss_pred HHhhcCCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccC
Q 013207 80 RRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGG 159 (447)
Q Consensus 80 ~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~ 159 (447)
+. +++.++.||||.-.+.. ....+++..+. .+++.....
T Consensus 81 ~~-------------------------------------~g~da~~GNHefd~g~~--~l~~~~~~~~~-~~l~aN~~~- 119 (264)
T cd07411 81 NA-------------------------------------LGVDAMVGHWEFTYGPE--RVRELFGRLNW-PFLAANVYD- 119 (264)
T ss_pred Hh-------------------------------------hCCeEEecccccccCHH--HHHHHHhhCCC-CEEEEEEEe-
Confidence 32 33444449999765543 23345555553 122111000
Q ss_pred CCcceeEEEEEE-EecCCeeEEEEecCCCChHHHH-------hhhcChhHHhhccchhhhh-ccccCceeEEEeeccccc
Q 013207 160 SGVGEITVYPIL-IRKGSTAVALYGLGNIRDERLN-------RMFQTPHAVQWMRPEAQEE-CQVSDWFNILVLHQNRVK 230 (447)
Q Consensus 160 ~~~~~i~~~Pi~-l~~g~~~vaiyGl~~~~~~~l~-------~~~~~~~~v~~l~p~~~~~-~~~~~~~~Ill~H~~~~~ 230 (447)
.......+.|.. ++.++.+|++.|+......... -.|.. .++.++....+. ......+.|++.|.....
T Consensus 120 ~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~iI~l~H~g~~~ 197 (264)
T cd07411 120 DEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGI--REEELQEVVVKLRREEGVDVVVLLSHNGLPV 197 (264)
T ss_pred CCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECC--HHHHHHHHHHHHHHhCCCCEEEEEecCCchh
Confidence 000001133433 4678899999998543110000 00110 011111100000 001256889999986521
Q ss_pred CCCCCcccccccccCCcEEEeccccCcccCCcccCCCCceEeccCC
Q 013207 231 TNPKNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (447)
Q Consensus 231 ~~~~~~i~~~~~~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS 276 (447)
...+-+ .+ .++|+|+.||.|.....|.. ...+..++++|+
T Consensus 198 ---~~~la~-~~-~~iDlilgGH~H~~~~~~~~-~~~~t~v~~~g~ 237 (264)
T cd07411 198 ---DVELAE-RV-PGIDVILSGHTHERTPKPII-AGGGTLVVEAGS 237 (264)
T ss_pred ---hHHHHh-cC-CCCcEEEeCcccccccCccc-ccCCEEEEEcCc
Confidence 111111 12 46999999999986543311 123467778774
No 51
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=98.89 E-value=1.7e-08 Score=100.43 Aligned_cols=66 Identities=21% Similarity=0.418 Sum_probs=48.4
Q ss_pred ccHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCCCHHH-------HHHHHHHHHHhhcCCCCcceeeechhhhccccc
Q 013207 34 HDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRST-------LVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNK 104 (447)
Q Consensus 34 ~d~~~~feeil~~a~~~--~vD~VliaGDLfd~~~ps~~~-------l~~~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~ 104 (447)
+..+..++.+++.+++. ++|+||++||+.+........ ...+.+.+++.
T Consensus 49 D~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~---------------------- 106 (296)
T cd00842 49 DSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKA---------------------- 106 (296)
T ss_pred CCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHh----------------------
Confidence 44478999999999998 999999999999877543321 22233344432
Q ss_pred ccccccCCCCCCCCCcEEEECCCCCCCC
Q 013207 105 FGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (447)
Q Consensus 105 ~~~~n~~d~~~~~~ipV~~I~GNHD~~~ 132 (447)
..++||+.+.||||...
T Consensus 107 -----------~~~~pv~~~~GNHD~~p 123 (296)
T cd00842 107 -----------FPDTPVYPALGNHDSYP 123 (296)
T ss_pred -----------CCCCCEEEcCCCCCCCc
Confidence 24789999999999854
No 52
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=98.85 E-value=3e-07 Score=94.25 Aligned_cols=104 Identities=11% Similarity=-0.024 Sum_probs=61.2
Q ss_pred CceeEEEeecccccCCC---CCcccccc----cccCCcEEEeccccCcccCCcccCCCCceEeccCCccc-cc-------
Q 013207 217 DWFNILVLHQNRVKTNP---KNAINEHF----LPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVA-TS------- 281 (447)
Q Consensus 217 ~~~~Ill~H~~~~~~~~---~~~i~~~~----~~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~-~s------- 281 (447)
....|++.|+++...|. ..++...+ ...++|++++||.|.-|.. ...+...+-+|+--. ..
T Consensus 213 a~WkIVvGHhPIySsG~hg~~~~L~~~L~PLL~ky~VdlYisGHDH~lq~i----~~~gt~yIvSGaGs~~~~~~~~~~~ 288 (394)
T PTZ00422 213 ADYIIVVGDKPIYSSGSSKGDSYLSYYLLPLLKDAQVDLYISGYDRNMEVL----TDEGTAHINCGSGGNSGRKSIMKNS 288 (394)
T ss_pred CCeEEEEecCceeecCCCCCCHHHHHHHHHHHHHcCcCEEEEccccceEEe----cCCCceEEEeCccccccCCCCCCCC
Confidence 34799999999965432 22222122 2357999999999986543 222333444444211 00
Q ss_pred cccCccCCceEEEEEEeCCeeEEEEEECCCCCcEEEEEEEecc
Q 013207 282 LIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIILKD 324 (447)
Q Consensus 282 ~~e~E~~~Kg~~lvei~~~~~~~~~i~L~~~Rpf~~~~i~l~~ 324 (447)
.+.-.....|+..++++.+++.++++.-..-..+....+.+..
T Consensus 289 ~s~F~~~~~GF~~~~l~~~~l~~~fid~~~GkvL~~~~~~~~~ 331 (394)
T PTZ00422 289 KSLFYSEDIGFCIHELNAEGMVTKFVSGNTGEVLYTHKQPLKK 331 (394)
T ss_pred CcceecCCCCEEEEEEecCEEEEEEEeCCCCcEEEEeeecccc
Confidence 0001134578999999999999999963234545555554433
No 53
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.83 E-value=1.3e-07 Score=92.45 Aligned_cols=217 Identities=18% Similarity=0.238 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHH-HHHHHHHHHHhhcCCCCcce
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST-LVKAIEILRRHCLNDRPVQF 91 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~-l~~~~~~L~~l~~~~~~~~~ 91 (447)
++|||++|+|--....+. ..-.+..+..+++.++++..+++|.+||+|+....+... -...+++|..
T Consensus 1 i~il~~~D~H~~~~~~~~--~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~---------- 68 (257)
T cd07408 1 ITILHTNDIHGRIDEDDN--NGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPISDLDKGETIIKIMNA---------- 68 (257)
T ss_pred CEEEEeccCcccccCCCC--ccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhhhhcCCcHHHHHHHh----------
Confidence 589999999943322111 111245567777777766778999999999875322110 0112233332
Q ss_pred eeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcceeEEEEEE
Q 013207 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (447)
Q Consensus 92 ~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~~Pi~ 171 (447)
.+.-++ ..||||.-.+.. ...++++..++- +++..... ...+.-.+.|..
T Consensus 69 -------------------------~g~d~~-~~GNHefd~G~~--~l~~~~~~~~~~-~l~aNv~~-~~~~~~~~~py~ 118 (257)
T cd07408 69 -------------------------VGYDAV-TPGNHEFDYGLD--RLKELSKEADFP-FLSANVYD-NDTGKRVFKPYK 118 (257)
T ss_pred -------------------------cCCcEE-ccccccccCCHH--HHHHHHhhCCCC-EEEEEEEE-cCCCCcccCCEE
Confidence 355564 469999765543 233344444431 22111000 000011134443
Q ss_pred E-ecC-CeeEEEEecCCCC------hHHHHh-hhcCh-hHHhhc-cchhhhhccccCceeEEEeecccccCCCCCccccc
Q 013207 172 I-RKG-STAVALYGLGNIR------DERLNR-MFQTP-HAVQWM-RPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEH 240 (447)
Q Consensus 172 l-~~g-~~~vaiyGl~~~~------~~~l~~-~~~~~-~~v~~l-~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~i~~~ 240 (447)
+ +.+ +.+|++.|+-... +..... .|.++ +.++.. .....+ .....-|++.|........ .+....
T Consensus 119 i~~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~---~~~D~iIvl~H~G~~~~~~-~~~~~~ 194 (257)
T cd07408 119 IKELGNGVKVGVIGLTTPETATKTHPKNVKDVTFEDPIEEAKKVIVAALKA---KGADVIVALGHLGVDRTSS-PWTSTE 194 (257)
T ss_pred EEEcCCCCEEEEEeecCcCcccccCccccCCcEEecHHHHHHHHHHHHHHh---CCCCEEEEEeCcCcCCCCC-CccHHH
Confidence 3 556 7899999974211 110000 01110 111110 011111 1246789999987643211 011111
Q ss_pred cc--ccCCcEEEeccccCcccCCcccCCCCceEeccCC
Q 013207 241 FL--PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (447)
Q Consensus 241 ~~--~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS 276 (447)
+. -.++|+|+.||.|.....+. ....+..++++|+
T Consensus 195 la~~~~giDvIigGH~H~~~~~~~-~~~~~~~ivq~g~ 231 (257)
T cd07408 195 LAANVTGIDLIIDGHSHTTIEIGK-KDGNNVLLTQTGA 231 (257)
T ss_pred HHHhCCCceEEEeCCCcccccCcc-cccCCeEEEcCCh
Confidence 11 24699999999999764321 1123466777774
No 54
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.80 E-value=8.5e-09 Score=93.27 Aligned_cols=86 Identities=22% Similarity=0.210 Sum_probs=50.2
Q ss_pred EEEcCCCCCCCCCccc--ccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCH-HHHHHHHHHHHHhhcCCCCccee
Q 013207 16 LVATDCHLGYMEKDEI--RRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSR-STLVKAIEILRRHCLNDRPVQFQ 92 (447)
Q Consensus 16 Lh~SD~HLG~~~~~~~--r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~-~~l~~~~~~L~~l~~~~~~~~~~ 92 (447)
+.+||+||+....+.. +-..-....+.+.+.+.+.+||+|+++||+||...+.. .........+.+.+.
T Consensus 1 ~~isD~HL~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~-------- 72 (156)
T cd08165 1 MFLADTHLLGSILGHWLDKLRREWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFG-------- 72 (156)
T ss_pred CccccchhcCCcccHHHHHHhhhHHHHHHHHHHHHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhc--------
Confidence 4689999965433221 00011112233444556779999999999999876533 222233333333210
Q ss_pred eechhhhcccccccccccCCCCCCCCCcEEEECCCCCCC
Q 013207 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (447)
Q Consensus 93 ~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~ 131 (447)
...++|+++|+||||..
T Consensus 73 ----------------------~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 73 ----------------------HPPDLPLHVVVGNHDIG 89 (156)
T ss_pred ----------------------cCCCCeEEEEcCCCCcC
Confidence 01368999999999984
No 55
>PLN02533 probable purple acid phosphatase
Probab=98.80 E-value=5.1e-08 Score=101.97 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=49.4
Q ss_pred CCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCc
Q 013207 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPV 89 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~ 89 (447)
...+||++++|+|.+.. . ...++.+.+.++|+||++||+.....- .......++++..+
T Consensus 137 ~~~~~f~v~GDlG~~~~---------~----~~tl~~i~~~~pD~vl~~GDl~y~~~~-~~~wd~f~~~i~~l------- 195 (427)
T PLN02533 137 KFPIKFAVSGDLGTSEW---------T----KSTLEHVSKWDYDVFILPGDLSYANFY-QPLWDTFGRLVQPL------- 195 (427)
T ss_pred CCCeEEEEEEeCCCCcc---------c----HHHHHHHHhcCCCEEEEcCccccccch-HHHHHHHHHHhhhH-------
Confidence 45799999999874321 1 134445567899999999999875421 11122234444433
Q ss_pred ceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCC
Q 013207 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (447)
Q Consensus 90 ~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~ 131 (447)
...+|+++++||||..
T Consensus 196 --------------------------~s~~P~m~~~GNHE~~ 211 (427)
T PLN02533 196 --------------------------ASQRPWMVTHGNHELE 211 (427)
T ss_pred --------------------------hhcCceEEeCcccccc
Confidence 2468999999999985
No 56
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.79 E-value=2.6e-07 Score=91.82 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCCCCCC-cc--cccccHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCC
Q 013207 13 VRILVATDCHLGYMEK-DE--IRRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHEN 65 (447)
Q Consensus 13 mrILh~SD~HLG~~~~-~~--~r~~d~~~~feeil~~a~~~~vD-~VliaGDLfd~~ 65 (447)
++|||++|+| |.... +. ....-.+..+..+++..++++++ ++|.+||+|..+
T Consensus 1 i~il~tnD~H-g~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs 56 (288)
T cd07412 1 VQILAINDFH-GRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGAS 56 (288)
T ss_pred CeEEEEeccc-cCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccc
Confidence 5899999999 54332 11 00111356678888888877776 888999999654
No 57
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=98.78 E-value=4.4e-08 Score=95.77 Aligned_cols=56 Identities=27% Similarity=0.213 Sum_probs=35.7
Q ss_pred HcCCCEEEEcCCCCCCCCCCHHH-HHHHHHHHHHhhcCCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCC
Q 013207 49 QKEVDFVLLGGDLFHENKPSRST-LVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGN 127 (447)
Q Consensus 49 ~~~vD~VliaGDLfd~~~ps~~~-l~~~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GN 127 (447)
..+||+|+++|||||..+..... ..+..+.+++.+ ..+ ...+|+++|+||
T Consensus 43 ~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~----------------------~~~-------~~~~pv~~VpGN 93 (257)
T cd08163 43 QLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIF----------------------DPS-------PGRKMVESLPGN 93 (257)
T ss_pred hcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHh----------------------cCC-------CccceEEEeCCC
Confidence 46899999999999988764322 112222333221 100 125799999999
Q ss_pred CCCCCC
Q 013207 128 HDDPAG 133 (447)
Q Consensus 128 HD~~~~ 133 (447)
||.+..
T Consensus 94 HDig~~ 99 (257)
T cd08163 94 HDIGFG 99 (257)
T ss_pred cccCCC
Confidence 998654
No 58
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.71 E-value=2.5e-08 Score=94.71 Aligned_cols=80 Identities=26% Similarity=0.300 Sum_probs=51.1
Q ss_pred EEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCC---CHHHHHHHHHHHHHhhcCCCCccee
Q 013207 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP---SRSTLVKAIEILRRHCLNDRPVQFQ 92 (447)
Q Consensus 16 Lh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~p---s~~~l~~~~~~L~~l~~~~~~~~~~ 92 (447)
+.+||+|||.... +.-..|-..++.-.. +.|.|.+.||+||...- ..+........|+++.
T Consensus 1 lFISDlHL~~~~p------~~t~~fl~Fl~~~a~-~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a--------- 64 (237)
T COG2908 1 LFISDLHLGPKRP------ALTAFFLDFLREEAA-QADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLA--------- 64 (237)
T ss_pred CeeeccccCCCCc------HHHHHHHHHHHhccc-cCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHH---------
Confidence 4789999995432 233444444433222 66999999999987532 2233344445555432
Q ss_pred eechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCC
Q 013207 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGV 134 (447)
Q Consensus 93 ~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~ 134 (447)
..|.|||.|+||||.-.+.
T Consensus 65 -----------------------~~G~~v~~i~GN~Dfll~~ 83 (237)
T COG2908 65 -----------------------RKGTRVYYIHGNHDFLLGK 83 (237)
T ss_pred -----------------------hcCCeEEEecCchHHHHHH
Confidence 4689999999999965443
No 59
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.71 E-value=3.4e-08 Score=90.72 Aligned_cols=91 Identities=19% Similarity=0.183 Sum_probs=55.3
Q ss_pred EEEcCCCCCCCCCccccc---------ccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHH-HHHHHHHHHHHhhcC
Q 013207 16 LVATDCHLGYMEKDEIRR---------HDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRS-TLVKAIEILRRHCLN 85 (447)
Q Consensus 16 Lh~SD~HLG~~~~~~~r~---------~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~-~l~~~~~~L~~l~~~ 85 (447)
|.+||.||+....-+.++ ......++.+-..+.+.+||+|+++|||||...+... ......+.+++...
T Consensus 1 llvaDpql~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~- 79 (171)
T cd07384 1 LLVADPQILDETSYPPRPKIALRLTRFYTDAYMRRAFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFF- 79 (171)
T ss_pred CcccCccccCCCCCCCCchhhhHHHHHhHHHHHHHHHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhc-
Confidence 468999999865322222 1222234444555567899999999999999876543 33334444444310
Q ss_pred CCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCC
Q 013207 86 DRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (447)
Q Consensus 86 ~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~ 132 (447)
..+ ....++|+++|+||||...
T Consensus 80 ---------------------~~~----~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 80 ---------------------LPS----NGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred ---------------------ccc----cccCCceEEEECCccccCC
Confidence 000 0002689999999999964
No 60
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.66 E-value=4.2e-07 Score=90.05 Aligned_cols=199 Identities=17% Similarity=0.224 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCCCCCCccc---------ccccHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCCCCCHHH-HHHHHHHHHH
Q 013207 13 VRILVATDCHLGYMEKDEI---------RRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRST-LVKAIEILRR 81 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~---------r~~d~~~~feeil~~a~~~~vD~Vli-aGDLfd~~~ps~~~-l~~~~~~L~~ 81 (447)
++|||++|+|--....+.. ...-.+..+..+++.+++++++.|++ +||.|+.+..+... -...+++|+.
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~ 80 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMNL 80 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHHh
Confidence 5899999999543222111 01113566788888888888886555 99999876332211 0112333332
Q ss_pred hhcCCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCC
Q 013207 82 HCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSG 161 (447)
Q Consensus 82 l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~ 161 (447)
.++.+.++ ||||.-.+... ..+.++.+++ .+++.-......
T Consensus 81 -----------------------------------~g~D~~~l-GNHefd~G~~~--l~~~~~~~~~-p~l~aNv~~~~~ 121 (281)
T cd07409 81 -----------------------------------LGYDAMTL-GNHEFDDGVEG--LAPFLNNLKF-PVLSANIDTSNE 121 (281)
T ss_pred -----------------------------------cCCCEEEe-ccccccCCHHH--HHHHHHhCCC-CEEEEeeecCCC
Confidence 35566554 99998776542 2334443332 122211000000
Q ss_pred --cceeEEEE-EEEecCCeeEEEEecCCCChHHHHh-----hhcCh-hHHhhccchhhhhccccCceeEEEeecccccCC
Q 013207 162 --VGEITVYP-ILIRKGSTAVALYGLGNIRDERLNR-----MFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTN 232 (447)
Q Consensus 162 --~~~i~~~P-i~l~~g~~~vaiyGl~~~~~~~l~~-----~~~~~-~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~ 232 (447)
...-.+.| ..+..++.+|++.|+-......... .|.++ +.++...+...+ .....-|++.|.....
T Consensus 122 ~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~II~l~H~G~~~-- 196 (281)
T cd07409 122 PPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPGGKVKFLDEIEAAQKEADKLKA---QGVNKIIALSHSGYEV-- 196 (281)
T ss_pred ccccccccCCeEEEEECCEEEEEEEEecCcccccccCCCceEECCHHHHHHHHHHHHHh---cCCCEEEEEeccCchh--
Confidence 00001344 3456778899999984321100000 01110 011110011111 1245789999986531
Q ss_pred CCCcccccccccCCcEEEeccccCcc
Q 013207 233 PKNAINEHFLPRFLDFVVWGHEHECL 258 (447)
Q Consensus 233 ~~~~i~~~~~~~~~D~v~~GH~H~~~ 258 (447)
...+.+. + .++|+|+.||.|...
T Consensus 197 -d~~la~~-~-~giD~IiggH~H~~~ 219 (281)
T cd07409 197 -DKEIARK-V-PGVDVIVGGHSHTFL 219 (281)
T ss_pred -HHHHHHc-C-CCCcEEEeCCcCccc
Confidence 0111122 2 469999999999965
No 61
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.65 E-value=7.6e-08 Score=84.24 Aligned_cols=33 Identities=33% Similarity=0.287 Sum_probs=23.0
Q ss_pred EEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCC
Q 013207 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLF 62 (447)
Q Consensus 16 Lh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLf 62 (447)
+++||+| |.. ..++++... ..++|+|+++||+.
T Consensus 1 ~viSDtH-~~~-----------~~~~~~~~~--~~~~d~ii~~GD~~ 33 (129)
T cd07403 1 LVISDTE-SPA-----------LYSPEIKVR--LEGVDLILSAGDLP 33 (129)
T ss_pred Ceecccc-Ccc-----------ccchHHHhh--CCCCCEEEECCCCC
Confidence 4789999 531 224444433 58999999999973
No 62
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.51 E-value=3.6e-06 Score=78.57 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=27.2
Q ss_pred HHHHHHHHH-HcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHH
Q 013207 40 FEEICSIAE-QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (447)
Q Consensus 40 feeil~~a~-~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~ 81 (447)
+..+.+.+. ..+||.|++.|||||+.+.+.+...+-.+.+++
T Consensus 32 L~~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~ 74 (193)
T cd08164 32 LGHIVSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRR 74 (193)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHH
Confidence 344444443 358999999999999987666554433333333
No 63
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3.5e-06 Score=81.03 Aligned_cols=255 Identities=18% Similarity=0.272 Sum_probs=119.6
Q ss_pred CCCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCC
Q 013207 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRP 88 (447)
Q Consensus 9 ~~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~ 88 (447)
....++||++.||=.-... .+-+...++-+++.+.++||||-+||-|-.+.+...-
T Consensus 40 ~dgslsflvvGDwGr~g~~-------nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~----------------- 95 (336)
T KOG2679|consen 40 SDGSLSFLVVGDWGRRGSF-------NQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSEN----------------- 95 (336)
T ss_pred CCCceEEEEEcccccCCch-------hHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCC-----------------
Confidence 3467999999999522111 1223345566678889999999999966444322110
Q ss_pred cceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCc-chhhhhhhcCCceEEecceec-cCCCc--ce
Q 013207 89 VQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDN-LSAVDILSACNLVNYFGKMVL-GGSGV--GE 164 (447)
Q Consensus 89 ~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~-~~~~d~L~~~g~v~~fg~~~l-~~~~~--~~ 164 (447)
.-.|...|..+ |.+|.+ ..|+|.|.||||.-..... ++ .+|....--=+|-+.-. ..+-+ -.
T Consensus 96 ---------Dp~Fq~sF~nI-YT~pSL--QkpWy~vlGNHDyrGnV~AQls--~~l~~~d~RW~c~rsf~~~ae~ve~f~ 161 (336)
T KOG2679|consen 96 ---------DPRFQDSFENI-YTAPSL--QKPWYSVLGNHDYRGNVEAQLS--PVLRKIDKRWICPRSFYVDAEIVEMFF 161 (336)
T ss_pred ---------ChhHHhhhhhc-ccCccc--ccchhhhccCccccCchhhhhh--HHHHhhccceecccHHhhcceeeeeec
Confidence 01122222222 455544 4599999999999765432 11 12221111001111000 00000 00
Q ss_pred eEEEEEEEecC-CeeEEEEecCCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeeccccc---CCCCCccccc
Q 013207 165 ITVYPILIRKG-STAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVK---TNPKNAINEH 240 (447)
Q Consensus 165 i~~~Pi~l~~g-~~~vaiyGl~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~---~~~~~~i~~~ 240 (447)
+.+.|..++.= ...=.+|-..-..+. ...++ ....|+.-...+. .....|++.|+++.. +|+..++...
T Consensus 162 v~~~~f~~d~~~~~~~~~ydw~~v~PR--~~~~~--~~l~~le~~L~~S---~a~wkiVvGHh~i~S~~~HG~T~eL~~~ 234 (336)
T KOG2679|consen 162 VDTTPFMDDTFTLCTDDVYDWRGVLPR--VKYLR--ALLSWLEVALKAS---RAKWKIVVGHHPIKSAGHHGPTKELEKQ 234 (336)
T ss_pred cccccchhhheecccccccccccCChH--HHHHH--HHHHHHHHHHHHh---hcceEEEecccceehhhccCChHHHHHH
Confidence 00111110000 000011111111111 01111 2234554444322 356799999999854 4666666555
Q ss_pred ccc----cCCcEEEeccccCcccCCcccCCCCceEeccCCccc--cc------cccCc----cCCceEEEEEEeCCeeEE
Q 013207 241 FLP----RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVA--TS------LIEGE----SKPKHVLLLEIKENQYRP 304 (447)
Q Consensus 241 ~~~----~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~--~s------~~e~E----~~~Kg~~lvei~~~~~~~ 304 (447)
++| .++|+.+.||-|.-|-. +.. ..+...+-+|.--. .+ +..+| -..+|+.-+++...+.++
T Consensus 235 LlPiL~~n~VdlY~nGHDHcLQhi-s~~-e~~iqf~tSGagSkaw~g~~~~~~~~p~~lkF~YdgqGfmsv~is~~e~~v 312 (336)
T KOG2679|consen 235 LLPILEANGVDLYINGHDHCLQHI-SSP-ESGIQFVTSGAGSKAWRGTDHNPEVNPKELKFYYDGQGFMSVEISHSEARV 312 (336)
T ss_pred HHHHHHhcCCcEEEecchhhhhhc-cCC-CCCeeEEeeCCcccccCCCccCCccChhheEEeeCCCceEEEEEecceeEE
Confidence 554 68999999999975432 110 11111222222111 01 11111 134588888888777777
Q ss_pred EEEECC
Q 013207 305 TKIPLT 310 (447)
Q Consensus 305 ~~i~L~ 310 (447)
.++...
T Consensus 313 vfyD~~ 318 (336)
T KOG2679|consen 313 VFYDVS 318 (336)
T ss_pred EEEecc
Confidence 776653
No 64
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=98.48 E-value=3.1e-07 Score=87.56 Aligned_cols=56 Identities=32% Similarity=0.326 Sum_probs=39.8
Q ss_pred eEEEEEcCCCCCCCCCccccccc----HHHHHHHHHH-HHHHcCCCEEEEcCCCCCCCCCC
Q 013207 13 VRILVATDCHLGYMEKDEIRRHD----SFEAFEEICS-IAEQKEVDFVLLGGDLFHENKPS 68 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d----~~~~feeil~-~a~~~~vD~VliaGDLfd~~~ps 68 (447)
-+.|++||+|||+...-..++.. +...+...++ ++..++|+.|++.||++|...++
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~ 80 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKS 80 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCcc
Confidence 57899999999986432111211 2334444444 77889999999999999998774
No 65
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.47 E-value=2.8e-07 Score=86.97 Aligned_cols=44 Identities=25% Similarity=0.181 Sum_probs=29.4
Q ss_pred EEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCC
Q 013207 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHEN 65 (447)
Q Consensus 16 Lh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~ 65 (447)
+++||+|+|..... ....+...+....+.++|.|+++||+||..
T Consensus 1 ~~iSDlHlg~~~~~------~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~ 44 (217)
T cd07398 1 LFISDLHLGDGGPA------ADFLLLFLLAALALGEADALYLLGDIFDLW 44 (217)
T ss_pred CEeeeecCCCCCCC------HHHHHHHHHhhhccCCCCEEEEeccEEEEE
Confidence 47999999975432 122233333332257999999999999864
No 66
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.46 E-value=2.1e-06 Score=100.44 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=37.3
Q ss_pred CCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCC
Q 013207 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHEN 65 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~Vli-aGDLfd~~ 65 (447)
...++|+|++|+| |... .+..+..+++..+++++|.|++ +||+|+..
T Consensus 658 ~~~l~Il~~nD~H-g~l~--------g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs 705 (1163)
T PRK09419 658 NWELTILHTNDFH-GHLD--------GAAKRVTKIKEVKEENPNTILVDAGDVYQGS 705 (1163)
T ss_pred ceEEEEEEEeecc-cCCC--------CHHHHHHHHHHHHhhCCCeEEEecCCCCCCc
Confidence 3459999999999 4321 2456788888888889999888 99999876
No 67
>PHA02239 putative protein phosphatase
Probab=98.46 E-value=5.1e-07 Score=87.14 Aligned_cols=53 Identities=19% Similarity=0.331 Sum_probs=40.7
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCCCHHHHHHHHH
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIE 77 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~--~vD~VliaGDLfd~~~ps~~~l~~~~~ 77 (447)
||++++||+| |. +..|+++++.+... ..|.|+++||+.|....|.+++..+++
T Consensus 1 m~~~~IsDIH-G~-----------~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~ 55 (235)
T PHA02239 1 MAIYVVPDIH-GE-----------YQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFD 55 (235)
T ss_pred CeEEEEECCC-CC-----------HHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHH
Confidence 7999999999 42 46688888888654 369999999999998767665544443
No 68
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.44 E-value=1e-05 Score=80.41 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHc----CC-CEEEEcCCCCCCC
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK----EV-DFVLLGGDLFHEN 65 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~----~v-D~VliaGDLfd~~ 65 (447)
++|||++|+|--....+.. .-.+..+..+++.++++ ++ -++|-+||+|...
T Consensus 1 ltIl~tnD~Hg~l~~~~~~--~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs 56 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTG--EYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGV 56 (285)
T ss_pred CEEEEEcccccccccCCCC--CccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCc
Confidence 5899999999654322111 11244455666666543 33 3788999999654
No 69
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.39 E-value=8e-07 Score=75.29 Aligned_cols=69 Identities=33% Similarity=0.507 Sum_probs=48.2
Q ss_pred EEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcceeeec
Q 013207 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVS 95 (447)
Q Consensus 16 Lh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~ls 95 (447)
+++||+|.+..... .... .....+.++|+|+++||+++...+........ +...
T Consensus 1 ~~~gD~h~~~~~~~---------~~~~-~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~---~~~~------------- 54 (131)
T cd00838 1 AVISDIHGNLEALE---------AVLE-AALAAAEKPDFVLVLGDLVGDGPDPEEVLAAA---LALL------------- 54 (131)
T ss_pred CeeecccCCccchH---------HHHH-HHHhcccCCCEEEECCcccCCCCCchHHHHHH---HHHh-------------
Confidence 57999999864321 0110 45666789999999999999988776643222 1111
Q ss_pred hhhhcccccccccccCCCCCCCCCcEEEECCCCC
Q 013207 96 DQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHD 129 (447)
Q Consensus 96 d~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD 129 (447)
...++|++++.||||
T Consensus 55 -------------------~~~~~~~~~~~GNHD 69 (131)
T cd00838 55 -------------------LLLGIPVYVVPGNHD 69 (131)
T ss_pred -------------------hcCCCCEEEeCCCce
Confidence 146899999999999
No 70
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=98.21 E-value=2.7e-06 Score=83.95 Aligned_cols=67 Identities=18% Similarity=0.296 Sum_probs=52.9
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHH-HcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcce
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~-~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~ 91 (447)
|+++++||+|-. +.+|+.+++.+. ..++|.++++||++|...-|.+ ++++++++
T Consensus 1 M~~~vIGDIHG~------------~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~----vl~~l~~l--------- 55 (275)
T PRK00166 1 MATYAIGDIQGC------------YDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLE----VLRFVKSL--------- 55 (275)
T ss_pred CcEEEEEccCCC------------HHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHH----HHHHHHhc---------
Confidence 789999999954 677898988875 3579999999999998854443 45566542
Q ss_pred eeechhhhcccccccccccCCCCCCCCCcEEEECCCCCC
Q 013207 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDD 130 (447)
Q Consensus 92 ~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~ 130 (447)
+.++++|.||||.
T Consensus 56 --------------------------~~~~~~VlGNHD~ 68 (275)
T PRK00166 56 --------------------------GDSAVTVLGNHDL 68 (275)
T ss_pred --------------------------CCCeEEEecChhH
Confidence 4478999999997
No 71
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.16 E-value=4.7e-06 Score=77.86 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=38.2
Q ss_pred HHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECC
Q 013207 47 AEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHG 126 (447)
Q Consensus 47 a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~G 126 (447)
....+||+|+++|||||....+.. .+..+.++++. +-|.. ..++|+++|+|
T Consensus 38 ~~~l~PD~Vi~lGDL~D~G~~~~~--~e~~e~l~Rf~-------------------~If~~--------~~~~~~~~VpG 88 (195)
T cd08166 38 LNFVQPDIVIFLGDLMDEGSIAND--DEYYSYVQRFI-------------------NIFEV--------PNGTKIIYLPG 88 (195)
T ss_pred HhccCCCEEEEeccccCCCCCCCH--HHHHHHHHHHH-------------------HHhcC--------CCCCcEEEECC
Confidence 345689999999999999865442 23445555542 00110 24799999999
Q ss_pred CCCCC
Q 013207 127 NHDDP 131 (447)
Q Consensus 127 NHD~~ 131 (447)
|||-.
T Consensus 89 NHDIG 93 (195)
T cd08166 89 DNDIG 93 (195)
T ss_pred CCCcC
Confidence 99975
No 72
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=98.15 E-value=5.1e-06 Score=78.71 Aligned_cols=72 Identities=24% Similarity=0.224 Sum_probs=51.8
Q ss_pred EEEcCCCCCCCCCcccccccHHHHHHHHHHHHH--------HcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCC
Q 013207 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE--------QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDR 87 (447)
Q Consensus 16 Lh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~--------~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~ 87 (447)
+++||+|-. +.+|+++++.+. ..+.|.++++||++|...-+.+++ ++|+++...
T Consensus 1 ~vi~DIHG~------------~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl----~~l~~l~~~-- 62 (208)
T cd07425 1 VAIGDLHGD------------LDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEIL----WLLYKLEQE-- 62 (208)
T ss_pred CEEeCccCC------------HHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHH----HHHHHHHHH--
Confidence 368999965 678999998775 457999999999999885555544 444443100
Q ss_pred CcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCC
Q 013207 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (447)
Q Consensus 88 ~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~ 131 (447)
....+.+|++|.||||..
T Consensus 63 --------------------------~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 63 --------------------------AAKAGGKVHFLLGNHELM 80 (208)
T ss_pred --------------------------HHhcCCeEEEeeCCCcHH
Confidence 002467899999999975
No 73
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.14 E-value=2.1e-05 Score=77.14 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=24.6
Q ss_pred EEEEcCCCCCCCCCcccccccHHHHHHHHHHHH-H--HcCCCEEEEcCCCCCCC
Q 013207 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIA-E--QKEVDFVLLGGDLFHEN 65 (447)
Q Consensus 15 ILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a-~--~~~vD~VliaGDLfd~~ 65 (447)
|.++.|.|-. +..+-+.++.. + ..++|+||++||++...
T Consensus 1 i~v~Gd~HG~------------~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~ 42 (262)
T cd00844 1 IAVEGCCHGE------------LDKIYETLEKIEKKEGTKVDLLICCGDFQAVR 42 (262)
T ss_pred CEEEecCCcc------------HHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcC
Confidence 5789999953 22232222222 2 24699999999997654
No 74
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=98.12 E-value=1.1e-05 Score=83.66 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=35.2
Q ss_pred CCCCCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHH-----HHcCCCEEEEcCCCCCC
Q 013207 7 EDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIA-----EQKEVDFVLLGGDLFHE 64 (447)
Q Consensus 7 ~~~~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a-----~~~~vD~VliaGDLfd~ 64 (447)
....+.++.+.+||.|.|..+. ..+. |...++.. .+.+|..++++||+.|.
T Consensus 220 ~~~~e~v~v~~isDih~GSk~F----~~~~---f~~fi~wl~g~~~~a~~vkyliiagd~VDG 275 (481)
T COG1311 220 NTGDERVYVALISDIHRGSKEF----LEDE---FEKFIDWLNGPGDLASRVKYLIIAGDVVDG 275 (481)
T ss_pred CCCCcceEEEEEeeeecccHHH----HHHH---HHHHHHHhcCCcccccceEEEEEecccccc
Confidence 3345668999999999998764 2233 33333333 34568899999999994
No 75
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.08 E-value=0.00035 Score=75.15 Aligned_cols=237 Identities=19% Similarity=0.190 Sum_probs=116.8
Q ss_pred CCCCCceEEEEEcCCCCCCCCCcccccc---cHHHHHHHHHHHHHHcCC-CEEEEcCCCCCCCCCCHH-H-HHHHHHHHH
Q 013207 7 EDIANTVRILVATDCHLGYMEKDEIRRH---DSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPSRS-T-LVKAIEILR 80 (447)
Q Consensus 7 ~~~~~~mrILh~SD~HLG~~~~~~~r~~---d~~~~feeil~~a~~~~v-D~VliaGDLfd~~~ps~~-~-l~~~~~~L~ 80 (447)
......++|||++|+|-.....+..... -.+.....+++..+++.. -++|-+||+++.+.++.. . -...+++|.
T Consensus 21 ~~~~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN 100 (517)
T COG0737 21 AAETVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLN 100 (517)
T ss_pred ccCceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHh
Confidence 3445669999999999765522221111 244455666777766655 568899999999655443 1 112334444
Q ss_pred HhhcCCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCc----eEEeccee
Q 013207 81 RHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNL----VNYFGKMV 156 (447)
Q Consensus 81 ~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~----v~~fg~~~ 156 (447)
.+ +.- ++.-|||+--.+... ..++++...+ .|++....
T Consensus 101 ~m-----------------------------------~yD-a~tiGNHEFd~g~~~--l~~~~~~~~fp~l~aNv~~~~~ 142 (517)
T COG0737 101 AL-----------------------------------GYD-AMTLGNHEFDYGLEA--LARLLDEAKFPVLSANVYDKNS 142 (517)
T ss_pred hc-----------------------------------CCc-EEeecccccccCHHH--HHHHHhccCCceEEeeeEecCC
Confidence 32 333 356679998776532 2223332221 12222200
Q ss_pred ccCCCcceeEEEEEE-EecCCeeEEEEecC--CCChHHHHh-----hhcCh-hHHhhccchhhhhccccCceeEEEeecc
Q 013207 157 LGGSGVGEITVYPIL-IRKGSTAVALYGLG--NIRDERLNR-----MFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQN 227 (447)
Q Consensus 157 l~~~~~~~i~~~Pi~-l~~g~~~vaiyGl~--~~~~~~l~~-----~~~~~-~~v~~l~p~~~~~~~~~~~~~Ill~H~~ 227 (447)
. ...-+.|.. +..++.+|++.|+- ...--.... .|.+. +.++...+.... ..-..-|++.|..
T Consensus 143 ---~--~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~~~~~~~~~~~~f~d~~e~~~~~i~elk~---~~vD~iI~LsH~G 214 (517)
T COG0737 143 ---T--GPPFFKPYAIKEVGGVKIGIIGLTTPTIPTWEKPNAIEGVTFRDPIEAAKKYIPELKG---EGVDVIIALSHLG 214 (517)
T ss_pred ---C--CccCcCCeEEEecCCeEEEEEEecCCcccccccccccCCcEEcCHHHHHHHHHHHHHh---cCCCEEEEEeccC
Confidence 0 011134544 46678999999974 221100000 01110 111111111111 0135789999987
Q ss_pred cccCCCCC-cccc--cccccCCcEEEeccccCcccCCcc-cCCCCceEeccCCccccccccCccCCceEEEEEEeCC
Q 013207 228 RVKTNPKN-AINE--HFLPRFLDFVVWGHEHECLIDPQE-VPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKEN 300 (447)
Q Consensus 228 ~~~~~~~~-~i~~--~~~~~~~D~v~~GH~H~~~i~pq~-~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~~~ 300 (447)
...-.... ..+. .....++|.++.||.|.-...+.. ....+..++++|+ .-|.+..++|+-+
T Consensus 215 ~~~d~~~~~~~~~~~~~~~~~iD~i~~GH~H~~~~~~~~~~~~~~t~ivqag~-----------~gk~vG~~di~~d 280 (517)
T COG0737 215 IEDDLELASEVPGDVDVAVPGIDLIIGGHSHTVFPGGDKPGTVNGTPIVQAGE-----------YGKYVGVLDITFD 280 (517)
T ss_pred cCccccccccccccccccccCcceEeccCCcccccCCcccCccCCEEEEccCh-----------hhCceeEEEEEEc
Confidence 64221100 0000 001123999999999964322110 0112356777763 4556677776653
No 76
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=98.08 E-value=4.4e-05 Score=67.88 Aligned_cols=67 Identities=21% Similarity=0.241 Sum_probs=40.0
Q ss_pred CceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHH----cCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHh
Q 013207 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ----KEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (447)
Q Consensus 11 ~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~----~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l 82 (447)
+|-.+-++||+|+|...--..+....+.-+++++ +++= ..=|.|.+.||+.-..+.... +..++.++
T Consensus 2 sm~mmyfisDtHfgh~nvi~~~pfsn~~ehd~vi-l~N~nntv~p~D~lwhLGDl~~~~n~~~~----a~~IlerL 72 (186)
T COG4186 2 SMTMMYFISDTHFGHKNVISMRPFSNPDEHDEVI-LSNWNNTVGPDDVLWHLGDLSSGANRERA----AGLILERL 72 (186)
T ss_pred ceeEEEEecccccCCcceeecCCCCCHHHHhHHH-HHhHHhcCCccceEEEecccccccchhhH----HHHHHHHc
Confidence 4566889999999987533333334445555544 2221 134789999999766543222 34556653
No 77
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=98.07 E-value=2.8e-05 Score=70.69 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=26.6
Q ss_pred CceeEEEeecccccC-CCCCcccccccccCCcEEEeccccCc
Q 013207 217 DWFNILVLHQNRVKT-NPKNAINEHFLPRFLDFVVWGHEHEC 257 (447)
Q Consensus 217 ~~~~Ill~H~~~~~~-~~~~~i~~~~~~~~~D~v~~GH~H~~ 257 (447)
..--|+|.|.+...- ++.+.+.+-+-...++.++.||+|+.
T Consensus 158 ~~~fivM~HYPP~s~~~t~~~~sevlee~rv~~~lyGHlHgv 199 (230)
T COG1768 158 VSKFIVMTHYPPFSDDGTPGPFSEVLEEGRVSKCLYGHLHGV 199 (230)
T ss_pred cCeEEEEEecCCCCCCCCCcchHHHHhhcceeeEEeeeccCC
Confidence 445799999987542 22233333233455899999999995
No 78
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=98.05 E-value=0.00023 Score=69.45 Aligned_cols=46 Identities=9% Similarity=0.147 Sum_probs=30.7
Q ss_pred EEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHH-----------HcCCCEEEEcCCCCCCCC
Q 013207 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-----------QKEVDFVLLGGDLFHENK 66 (447)
Q Consensus 14 rILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~-----------~~~vD~VliaGDLfd~~~ 66 (447)
+|+.+||+|+|..... ...|+-+++... ..++-.|++|||+++...
T Consensus 1 ~i~~vSgL~ig~~~~~-------~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~ 57 (257)
T cd07387 1 YIALVSGLGLGGNAES-------SLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKST 57 (257)
T ss_pred CEEEEcccccCCCccc-------hHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccc
Confidence 4789999999976321 233444444443 235567999999999653
No 79
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.05 E-value=2.4e-05 Score=80.25 Aligned_cols=94 Identities=23% Similarity=0.288 Sum_probs=63.6
Q ss_pred CCceEEEEEcCCCCCC----CCC-cc--cccccHHHHHHHHHHHHHH-cCCCEEEEcCCCCCCC-CCCHHHHHHHHHHHH
Q 013207 10 ANTVRILVATDCHLGY----MEK-DE--IRRHDSFEAFEEICSIAEQ-KEVDFVLLGGDLFHEN-KPSRSTLVKAIEILR 80 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~----~~~-~~--~r~~d~~~~feeil~~a~~-~~vD~VliaGDLfd~~-~ps~~~l~~~~~~L~ 80 (447)
++..||+.+||.||=- +.. .. .-+.|.+ +....+.+.. .+||.+++.|||||+. .-+.+...+-.+.|+
T Consensus 46 ~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~--lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~Rfk 123 (410)
T KOG3662|consen 46 ENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWY--LRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFK 123 (410)
T ss_pred CCceEEEEecCchhcCCCCCccccchHHhhhhHHH--HHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHH
Confidence 6789999999999832 111 11 1122332 5556666554 6899999999999954 455666666666666
Q ss_pred HhhcCCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCC
Q 013207 81 RHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVD 135 (447)
Q Consensus 81 ~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~ 135 (447)
+.. +. +..+|++.|+||||-..+..
T Consensus 124 kIf----------------------~~--------k~~~~~~~i~GNhDIGf~~~ 148 (410)
T KOG3662|consen 124 KIF----------------------GR--------KGNIKVIYIAGNHDIGFGNE 148 (410)
T ss_pred Hhh----------------------CC--------CCCCeeEEeCCccccccccc
Confidence 642 11 24789999999999987653
No 80
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.04 E-value=0.00018 Score=80.36 Aligned_cols=56 Identities=18% Similarity=0.288 Sum_probs=37.2
Q ss_pred CCceEEEEEcCCCCCCCCCcccc----cccHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCC
Q 013207 10 ANTVRILVATDCHLGYMEKDEIR----RHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHEN 65 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~~r----~~d~~~~feeil~~a~~~~vD-~VliaGDLfd~~ 65 (447)
.-.++|||++|+|--....+... ..-.+..+..+++.+++++.. ++|.+||+|..+
T Consensus 37 ~~~L~IL~TnDiHg~l~~~dy~~~~~~~~~Glar~AtlI~~~R~e~~ntlllD~GD~iqGs 97 (780)
T PRK09418 37 TVNLRILETSDIHVNLMNYDYYQTKTDNKVGLVQTATLVNKAREEAKNSVLFDDGDALQGT 97 (780)
T ss_pred ceEEEEEEEeecCCCCcCcCccccCCcCCCCHHHHHHHHHHHHHhCCCeEEEECCCCCCCc
Confidence 34699999999997644332110 111345567778887766553 688899999875
No 81
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.04 E-value=9.9e-05 Score=86.57 Aligned_cols=55 Identities=24% Similarity=0.346 Sum_probs=39.3
Q ss_pred CceEEEEEcCCCCCCCCCccc----ccccHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCC
Q 013207 11 NTVRILVATDCHLGYMEKDEI----RRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHEN 65 (447)
Q Consensus 11 ~~mrILh~SD~HLG~~~~~~~----r~~d~~~~feeil~~a~~~~vD~Vli-aGDLfd~~ 65 (447)
..++|||++|+|-....++.. ...-.+..+..+++.+++++++.|++ +||+|..+
T Consensus 40 ~~l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r~~~~n~llld~GD~~qGs 99 (1163)
T PRK09419 40 VNIQILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKARKENPNTLLVDNGDLIQGN 99 (1163)
T ss_pred eEEEEEEEecccccccccccccCCCCCCcCHHHHHHHHHHHHHhCCCeEEEeCCCccCCC
Confidence 469999999999654332211 01113566788888898888888777 99999976
No 82
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=98.04 E-value=0.00036 Score=76.95 Aligned_cols=56 Identities=20% Similarity=0.254 Sum_probs=37.1
Q ss_pred CCceEEEEEcCCCCCCCCCccc----ccccHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCC
Q 013207 10 ANTVRILVATDCHLGYMEKDEI----RRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHEN 65 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~~----r~~d~~~~feeil~~a~~~~vD-~VliaGDLfd~~ 65 (447)
.-.++|||++|+|--...++.. ...-.+..+..+++.++++... ++|-+||+|..+
T Consensus 23 ~~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~llvD~GD~~qGs 83 (649)
T PRK09420 23 TVDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAKNSVLVDNGDLIQGS 83 (649)
T ss_pred CceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCCCEEEEECCCcCCCc
Confidence 4569999999999654333211 1111345567778888776554 678899999865
No 83
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.98 E-value=1.6e-05 Score=76.69 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=41.2
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHH----------cCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHh
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ----------KEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~----------~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l 82 (447)
|||+++||+|-. +.+|+.+++.+.- .+.|.+++.||++|...-|.++ +++|+++
T Consensus 1 ~~i~vigDIHG~------------~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~ev----l~~l~~l 64 (234)
T cd07423 1 GPFDIIGDVHGC------------YDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEV----LRLVMSM 64 (234)
T ss_pred CCeEEEEECCCC------------HHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHH----HHHHHHH
Confidence 799999999964 6788999988721 1479999999999998655554 4555553
No 84
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.96 E-value=1.6e-05 Score=75.11 Aligned_cols=44 Identities=20% Similarity=0.196 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHH-cCCCEEEEcCCCCCCCCCC
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ-KEVDFVLLGGDLFHENKPS 68 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~-~~vD~VliaGDLfd~~~ps 68 (447)
.||+++||+|-. +.+|+++++.+.. .++|.|+++||+.|....+
T Consensus 1 ~ri~~isDiHg~------------~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~ 45 (207)
T cd07424 1 GRDFVVGDIHGH------------YSLLQKALDAVGFDPARDRLISVGDLIDRGPES 45 (207)
T ss_pred CCEEEEECCCCC------------HHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCH
Confidence 489999999932 5678899888764 4799999999999987444
No 85
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=97.94 E-value=0.00033 Score=76.93 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=35.5
Q ss_pred ceEEEEEcCCCCCCCCCccc----ccccHHHHHHHHHHHHHHcCC-CEEEEcCCCCCCC
Q 013207 12 TVRILVATDCHLGYMEKDEI----RRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHEN 65 (447)
Q Consensus 12 ~mrILh~SD~HLG~~~~~~~----r~~d~~~~feeil~~a~~~~v-D~VliaGDLfd~~ 65 (447)
.++|||++|+|--....+.. ...-.+..+..+++.++++.. -++|-+||+|..+
T Consensus 2 ~l~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~lllD~GD~~qGs 60 (626)
T TIGR01390 2 DLRIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVKNSVLVDNGDLIQGS 60 (626)
T ss_pred eEEEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCCCeEEEECCCcCCCc
Confidence 47999999999764433211 011134556777777776544 3678899999975
No 86
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.92 E-value=0.00023 Score=71.66 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHc----CC-CEEEEcCCCCCCC
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK----EV-DFVLLGGDLFHEN 65 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~----~v-D~VliaGDLfd~~ 65 (447)
++|||++|+|-..... ..+..+..+++..+++ +. -++|.+||+|...
T Consensus 1 l~IlhtnD~Hg~~~~~------gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs 52 (313)
T cd08162 1 LQLLHTSDGESGLLAE------DDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPG 52 (313)
T ss_pred CeEEEecccccCcccc------CCHHHHHHHHHHHHHhhhccCCCeEEEecCccccCc
Confidence 5799999999654321 1234455555555443 33 3889999999864
No 87
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=97.91 E-value=0.00014 Score=72.20 Aligned_cols=56 Identities=11% Similarity=0.047 Sum_probs=31.4
Q ss_pred CceeEEEeecccccCCCCCcccc---cccccCCc-EEEeccccCcccCCcccCCCCceEeccCC
Q 013207 217 DWFNILVLHQNRVKTNPKNAINE---HFLPRFLD-FVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (447)
Q Consensus 217 ~~~~Ill~H~~~~~~~~~~~i~~---~~~~~~~D-~v~~GH~H~~~i~pq~~~~~~~~i~ypGS 276 (447)
-..-|++.|.....-.....+.+ ..++ ++| +++.||.|.... .... .+..++|||+
T Consensus 188 ~DvIIvlsH~G~~~d~~~~~~~~~la~~~~-~id~~Ii~GHsH~~~~--~~~~-~~~~ivq~G~ 247 (282)
T cd07407 188 VDLILVLGHMPVRDDAEFKVLHDAIRKIFP-DTPIQFLGGHSHVRDF--TQYD-SSSTGLESGR 247 (282)
T ss_pred CCEEEEEeCCCCCCCccHHHHHHHHHHhCC-CCCEEEEeCCcccccc--eecc-CcEEEEeccc
Confidence 46789999987642210000001 1133 466 799999997543 2222 3467778874
No 88
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.90 E-value=0.00014 Score=78.91 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=34.6
Q ss_pred CCCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHc----CC-CEEEEcCCCCCCC
Q 013207 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK----EV-DFVLLGGDLFHEN 65 (447)
Q Consensus 9 ~~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~----~v-D~VliaGDLfd~~ 65 (447)
..-.++|||++|+|--....+. ..-.+..+..+++..+++ ++ -++|.+||.|...
T Consensus 31 ~~~~ltil~tnD~Hg~~~~~~~--~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs 90 (551)
T PRK09558 31 KTYKITILHTNDHHGHFWRNEY--GEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGV 90 (551)
T ss_pred CceEEEEEEecccCCCcccccc--CCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccce
Confidence 3457999999999964332111 111355566666666543 33 3688899999865
No 89
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.90 E-value=0.00051 Score=77.00 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=36.3
Q ss_pred CceEEEEEcCCCCCCCCCcccc----cccHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCC
Q 013207 11 NTVRILVATDCHLGYMEKDEIR----RHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHEN 65 (447)
Q Consensus 11 ~~mrILh~SD~HLG~~~~~~~r----~~d~~~~feeil~~a~~~~vD-~VliaGDLfd~~ 65 (447)
-.+||||++|+|--...++... ..-.+..+..+++.+++++.. ++|.+||+|..+
T Consensus 114 ~~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGS 173 (814)
T PRK11907 114 VDVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGT 173 (814)
T ss_pred eEEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCC
Confidence 3599999999996543332110 111244566777777776654 688899999975
No 90
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.88 E-value=0.00029 Score=76.35 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=34.0
Q ss_pred eEEEEEcCCCCCCCCCccc----c-----cccHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCC
Q 013207 13 VRILVATDCHLGYMEKDEI----R-----RHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHEN 65 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~----r-----~~d~~~~feeil~~a~~~~vD-~VliaGDLfd~~ 65 (447)
++|||++|+|--....... . ..-.+..+..+++..+++.+. ++|.+||.|..+
T Consensus 1 ltILhtND~Hg~l~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~n~l~ldaGD~~~gs 63 (550)
T TIGR01530 1 LSIIHINDHHSHLEPEELEIALAGEQLKAAIGGFAALNAEINKLRAESKNALVLHAGDAIIGT 63 (550)
T ss_pred CEEEEEccccccccCcccccccCCCccccccCCHHHHHHHHHHHHhhCCCeEEEECCCCCCCc
Confidence 5899999999543221110 0 011356677778777765554 678999999865
No 91
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.82 E-value=3.3e-05 Score=73.31 Aligned_cols=68 Identities=21% Similarity=0.199 Sum_probs=52.0
Q ss_pred EEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcceeeech
Q 013207 17 VATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSD 96 (447)
Q Consensus 17 h~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~lsd 96 (447)
++||+|-. +..|..+++.+.....|.++++||++|....+.++ ++.+..+.
T Consensus 2 ~igDiHg~------------~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~~~~~----l~~l~~~~------------- 52 (225)
T cd00144 2 VIGDIHGC------------LDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVEV----IDLLLALK------------- 52 (225)
T ss_pred EEeCCCCC------------HHHHHHHHHHhCCCCCCEEEEECCEeCCCCCcHHH----HHHHHHhc-------------
Confidence 68999943 56788999888878899999999999998776654 44555431
Q ss_pred hhhcccccccccccCCCCCCCCCcEEEECCCCCCCC
Q 013207 97 QAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (447)
Q Consensus 97 ~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~ 132 (447)
....++++|.||||...
T Consensus 53 -------------------~~~~~~~~l~GNHe~~~ 69 (225)
T cd00144 53 -------------------ILPDNVILLRGNHEDML 69 (225)
T ss_pred -------------------CCCCcEEEEccCchhhh
Confidence 01457999999999853
No 92
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.77 E-value=5e-05 Score=74.26 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=50.6
Q ss_pred EEEcCCCCCCCCCcccccccHHHHHHHHHHHHHH-cCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcceeee
Q 013207 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ-KEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVV 94 (447)
Q Consensus 16 Lh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~-~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~l 94 (447)
.+++|+|-. +.+|+++++.+.- .+.|.++++||++|...-|.+ ++++++++
T Consensus 2 yvIGDIHG~------------~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~e----vl~~l~~l------------ 53 (257)
T cd07422 2 YAIGDIQGC------------YDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLE----TLRFVKSL------------ 53 (257)
T ss_pred EEEECCCCC------------HHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHH----HHHHHHhc------------
Confidence 579999965 6789999988763 478999999999998855544 45666653
Q ss_pred chhhhcccccccccccCCCCCCCCCcEEEECCCCCCC
Q 013207 95 SDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (447)
Q Consensus 95 sd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~ 131 (447)
+..+++|.||||..
T Consensus 54 -----------------------~~~v~~VlGNHD~~ 67 (257)
T cd07422 54 -----------------------GDSAKTVLGNHDLH 67 (257)
T ss_pred -----------------------CCCeEEEcCCchHH
Confidence 24688999999984
No 93
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.76 E-value=5.5e-05 Score=73.46 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=38.8
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHc---------CCCEEEEcCCCCCCCCCCHHHHHHHH
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK---------EVDFVLLGGDLFHENKPSRSTLVKAI 76 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~---------~vD~VliaGDLfd~~~ps~~~l~~~~ 76 (447)
||+.+++|+|-- +..|+++++.+.-. .-|.+++.||+.|+..-|.+++..++
T Consensus 1 ~~~~vIGDIHG~------------~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~ 61 (245)
T PRK13625 1 MKYDIIGDIHGC------------YQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVW 61 (245)
T ss_pred CceEEEEECccC------------HHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHH
Confidence 789999999943 67788888775421 35799999999999866766554333
No 94
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.75 E-value=4.4e-05 Score=72.78 Aligned_cols=52 Identities=21% Similarity=0.238 Sum_probs=41.4
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK-EVDFVLLGGDLFHENKPSRSTLVKAIEILR 80 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~-~vD~VliaGDLfd~~~ps~~~l~~~~~~L~ 80 (447)
.||.++||+|-. +.+|+++++.+... +.|.+++.||+.|...-|.++ +++|+
T Consensus 17 ~ri~vigDIHG~------------~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~v----l~~l~ 69 (218)
T PRK11439 17 RHIWLVGDIHGC------------FEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRC----LQLLE 69 (218)
T ss_pred CeEEEEEcccCC------------HHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHH----HHHHH
Confidence 599999999965 67899999988654 789999999999998555543 45554
No 95
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.69 E-value=7.1e-05 Score=71.43 Aligned_cols=45 Identities=20% Similarity=0.224 Sum_probs=37.2
Q ss_pred EEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHH-HcCCCEEEEcCCCCCCCCCCHH
Q 013207 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSRS 70 (447)
Q Consensus 14 rILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~-~~~vD~VliaGDLfd~~~ps~~ 70 (447)
||+++||+|-. +.+|+++++.+. ..++|.+++.||+.|...-+.+
T Consensus 16 ri~visDiHg~------------~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~ 61 (218)
T PRK09968 16 HIWVVGDIHGE------------YQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLN 61 (218)
T ss_pred eEEEEEeccCC------------HHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHH
Confidence 99999999943 678899988875 4689999999999998844443
No 96
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=97.68 E-value=0.00029 Score=73.03 Aligned_cols=80 Identities=16% Similarity=-0.053 Sum_probs=47.9
Q ss_pred CCCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCC
Q 013207 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRP 88 (447)
Q Consensus 9 ~~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~ 88 (447)
+....++.++.|+=...... +....... ..++|+||+.|||-....-+...-...++.++.+
T Consensus 144 ~~~~~~~~i~GDlG~~~~~~----------s~~~~~~~--~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~------ 205 (452)
T KOG1378|consen 144 QDSPTRAAIFGDMGCTEPYT----------STLRNQEE--NLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPI------ 205 (452)
T ss_pred ccCceeEEEEcccccccccc----------chHhHHhc--ccCCcEEEEecchhhcCCCCccchHHHHhhhhhh------
Confidence 44678999999985544321 11222211 1279999999999544432212222234444432
Q ss_pred cceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCC
Q 013207 89 VQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (447)
Q Consensus 89 ~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~ 133 (447)
.+-+|..++.|||+.-..
T Consensus 206 ---------------------------As~vPymv~~GNHE~d~~ 223 (452)
T KOG1378|consen 206 ---------------------------ASYVPYMVCSGNHEIDWP 223 (452)
T ss_pred ---------------------------hccCceEEecccccccCC
Confidence 357899999999988543
No 97
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=97.60 E-value=0.00013 Score=71.84 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=41.9
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHH-HcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHH
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~-~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~ 81 (447)
|++.+++|+|-. +.+|+.+++.+. ..+.|.+++.||+++...-|.++ ++++++
T Consensus 1 m~~YvIGDIHGc------------~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slev----L~~l~~ 54 (279)
T TIGR00668 1 MATYLIGDLHGC------------YDELQALLERVEFDPGQDTLWLTGDLVARGPGSLEV----LRYVKS 54 (279)
T ss_pred CcEEEEEcccCC------------HHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHH----HHHHHh
Confidence 678999999954 678999999986 34789999999999998555554 455554
No 98
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.59 E-value=0.0086 Score=58.57 Aligned_cols=190 Identities=21% Similarity=0.206 Sum_probs=99.5
Q ss_pred EEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHH-HcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCccee
Q 013207 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (447)
Q Consensus 14 rILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~-~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~ 92 (447)
|||++.|.= |. .-..++.+.+...+ ++++|+++..||.+-...+... ...+.|..
T Consensus 1 ~ilfigdi~-g~---------~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~~---~~~~~L~~----------- 56 (255)
T cd07382 1 KILFIGDIV-GK---------PGRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGITP---KIAKELLS----------- 56 (255)
T ss_pred CEEEEEeCC-CH---------HHHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCCH---HHHHHHHh-----------
Confidence 578888873 32 22455666666655 4689999999999876643332 23445553
Q ss_pred eechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCce----EEecceeccCCCcceeEEE
Q 013207 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLV----NYFGKMVLGGSGVGEITVY 168 (447)
Q Consensus 93 ~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v----~~fg~~~l~~~~~~~i~~~ 168 (447)
.++-++.+ |||....+. ....+.....+ |+.... + ..
T Consensus 57 ------------------------~G~D~iTl-GNH~fD~ge----l~~~l~~~~~~l~~aN~~~~~----p------g~ 97 (255)
T cd07382 57 ------------------------AGVDVITM-GNHTWDKKE----ILDFIDEEPRLLRPANYPPGT----P------GR 97 (255)
T ss_pred ------------------------cCCCEEEe-cccccCcch----HHHHHhcCcCceEeeecCCCC----C------CC
Confidence 46777777 999876662 22333322111 111100 0 11
Q ss_pred E-EEEecCCeeEEEEecC-CCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCCCcccccccccCC
Q 013207 169 P-ILIRKGSTAVALYGLG-NIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFL 246 (447)
Q Consensus 169 P-i~l~~g~~~vaiyGl~-~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~i~~~~~~~~~ 246 (447)
| ..+..++.+|++.|+- ......+..-| ..++...+...+ ...+-|+++|..... ...--...++..+
T Consensus 98 ~~~i~~~~G~kIaVigl~g~~~~~~~~~P~---~~~~~~v~~lk~----~~D~IIV~~H~g~ts---Ek~ala~~ldg~V 167 (255)
T cd07382 98 GYGVVEVNGKKIAVINLMGRVFMPPLDNPF---RAADELLEELKE----EADIIFVDFHAEATS---EKIALGWYLDGRV 167 (255)
T ss_pred CeEEEEECCEEEEEEEEecccCCCcCCCHH---HHHHHHHHHHhc----CCCEEEEEECCCCCH---HHHHHHHhCCCCc
Confidence 2 2335567788888763 11000010011 111111111111 135789999975421 1100113455569
Q ss_pred cEEEeccccCcccCCcccCCCCceEeccCC
Q 013207 247 DFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (447)
Q Consensus 247 D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS 276 (447)
|.|+-||.|......+.++++..++...|-
T Consensus 168 dvIvGtHTHv~t~d~~il~~gTa~itd~Gm 197 (255)
T cd07382 168 SAVVGTHTHVQTADERILPGGTAYITDVGM 197 (255)
T ss_pred eEEEeCCCCccCCccEEeeCCeEEEecCcc
Confidence 999999999987654445444345555553
No 99
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=97.52 E-value=0.0011 Score=69.70 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=43.5
Q ss_pred CCceEEEEEcCCCCCCCCCc------------ccccccH--HHHHHHHHHHHHHc--------CCCEEEEcCCCCCCCCC
Q 013207 10 ANTVRILVATDCHLGYMEKD------------EIRRHDS--FEAFEEICSIAEQK--------EVDFVLLGGDLFHENKP 67 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~------------~~r~~d~--~~~feeil~~a~~~--------~vD~VliaGDLfd~~~p 67 (447)
..-.+|+++||+||--.+.. ..|-+.. -..++.+++.++.. ..||++-+||..|..
T Consensus 32 ~~l~~f~~~tD~hi~D~~sP~r~~~l~~~~~sa~rP~e~~t~~~~~a~V~~vNal~~~p~~~~~~df~i~~GD~~dn~-- 109 (496)
T TIGR03767 32 TGLASFVQVTDVHLVDVQSPMRVEYLHPFTGSAFRPQEFLTLHGAVALVQRVNALQGGPVTGTALDFVVSTGDNTDNA-- 109 (496)
T ss_pred chhheeeeeeeeeeccCCCchhhhhhccCCCcccChhHHHHHHHHHHHHHHHhhcccCCCcCCceeEEEeccccccch--
Confidence 34578999999999654321 1122222 24677788777654 689999999999965
Q ss_pred CHHHHHHHHHHH
Q 013207 68 SRSTLVKAIEIL 79 (447)
Q Consensus 68 s~~~l~~~~~~L 79 (447)
+...+.-.+.+|
T Consensus 110 ~~nEl~w~~~vl 121 (496)
T TIGR03767 110 EYNELDWFLTVL 121 (496)
T ss_pred HHHHHHHHHHHh
Confidence 333444444444
No 100
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=97.43 E-value=0.0003 Score=67.34 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=37.9
Q ss_pred EEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHc--------CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHh
Q 013207 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--------EVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (447)
Q Consensus 16 Lh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~--------~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l 82 (447)
.+++|+|-. +.+|+++++.+... ..|.|++.||+.|..--|.++ +++|.++
T Consensus 2 ~vIGDIHG~------------~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~v----l~~l~~l 60 (222)
T cd07413 2 DFIGDIHGH------------AEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIREL----LEIVKSM 60 (222)
T ss_pred EEEEeccCC------------HHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHH----HHHHHHh
Confidence 578999954 67788888887432 478999999999998666664 4555543
No 101
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=97.34 E-value=0.00071 Score=67.02 Aligned_cols=52 Identities=15% Similarity=0.235 Sum_probs=37.5
Q ss_pred EEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHc------CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHH
Q 013207 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK------EVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (447)
Q Consensus 14 rILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~------~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~ 81 (447)
+++.++|+|-. +..|+++++.+.+. ..+.|++.||+.|..--|..+ +++|.+
T Consensus 3 ~iyaIGDIHG~------------~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eV----ld~L~~ 60 (304)
T cd07421 3 VVICVGDIHGY------------ISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKV----IDFLIS 60 (304)
T ss_pred eEEEEEeccCC------------HHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHH----HHHHHH
Confidence 68999999954 56677777765432 467899999999998555554 455554
No 102
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=97.11 E-value=0.033 Score=54.75 Aligned_cols=188 Identities=16% Similarity=0.168 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHH-cCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcce
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ-KEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~-~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~ 91 (447)
||||++.|.= |. .-...+.+.+..+++ .++|+++..||.+........ ++.+.|.+
T Consensus 1 m~ilfiGDi~-G~---------~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~---~~~~~L~~---------- 57 (266)
T TIGR00282 1 IKFLFIGDVY-GK---------AGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTL---KIYEFLKQ---------- 57 (266)
T ss_pred CeEEEEEecC-CH---------HHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCH---HHHHHHHh----------
Confidence 8999999995 32 235667777777765 579999999999976533322 23444543
Q ss_pred eeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhh----hhhhcCCceEEecceeccCCCcceeEE
Q 013207 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAV----DILSACNLVNYFGKMVLGGSGVGEITV 167 (447)
Q Consensus 92 ~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~----d~L~~~g~v~~fg~~~l~~~~~~~i~~ 167 (447)
.++-++.+ |||..-.+.- +..+ +++..++ |-... .+. .
T Consensus 58 -------------------------~GvDviT~-GNH~~Dkge~-~~~i~~~~~~lrpan---yp~~~--pG~---g--- 99 (266)
T TIGR00282 58 -------------------------SGVNYITM-GNHTWFQKLI-LDVVINQKDLVRPLN---FDTSF--AGK---G--- 99 (266)
T ss_pred -------------------------cCCCEEEc-cchhccCcHH-HHHHhccccccccCC---CCCCC--CCC---C---
Confidence 57888888 8997765531 0111 1222221 11100 000 1
Q ss_pred EEEEEecCCeeEEEEecC---CCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCCCccccccccc
Q 013207 168 YPILIRKGSTAVALYGLG---NIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPR 244 (447)
Q Consensus 168 ~Pi~l~~g~~~vaiyGl~---~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~i~~~~~~~ 244 (447)
...+..++.++++.++- +..+-.+..-| ..++.+-+... ....+-|+.+|..-.. ....-..++..
T Consensus 100 -~~i~~~nG~kiaVinl~G~~fm~~~~~~~Pf---~~~d~~i~~lk----~~~d~IIVd~Haeats---EK~a~~~~ldg 168 (266)
T TIGR00282 100 -SLVFEFNGAKIAVTNLQGTSVNLPFKTTNPF---KVLKELINMLK----KDCDLIFVDFHAETTS---EKNAFGMAFDG 168 (266)
T ss_pred -cEEEEECCEEEEEEECCCcccCCccccCCHH---HHHHHHHHhhh----cCCCEEEEEeCCCCHH---HHHHHHHHhCC
Confidence 12234555677776542 22211011111 11222111111 1134789999975421 11111345778
Q ss_pred CCcEEEeccccCcccCCcccCCCCceEe
Q 013207 245 FLDFVVWGHEHECLIDPQEVPGMGFHLT 272 (447)
Q Consensus 245 ~~D~v~~GH~H~~~i~pq~~~~~~~~i~ 272 (447)
++|.|+--|.|-...+.+-++++..++.
T Consensus 169 ~vsaVvGtHtHV~TaD~~il~~gtayit 196 (266)
T TIGR00282 169 YVTAVVGTHTHVPTADLRILPKGTAYIT 196 (266)
T ss_pred CccEEEeCCCCCCCCcceeCCCCCEEEe
Confidence 8999999999987665444444444444
No 103
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=97.10 E-value=0.0013 Score=64.92 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=41.9
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHH
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKA 75 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~ 75 (447)
+++.+++|+|-. +.+|..+++.+.....+.+++.||++|+..++.+++...
T Consensus 28 ~~i~vvGDiHG~------------~~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s~e~l~~l 78 (271)
T smart00156 28 APVTVCGDIHGQ------------FDDLLRLFDLNGPPPDTNYVFLGDYVDRGPFSIEVILLL 78 (271)
T ss_pred CCEEEEEeCcCC------------HHHHHHHHHHcCCCCCceEEEeCCccCCCCChHHHHHHH
Confidence 689999999954 677888888777777899999999999998888765433
No 104
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.0012 Score=58.25 Aligned_cols=80 Identities=20% Similarity=0.267 Sum_probs=53.8
Q ss_pred CceeEEEeecccc-cCCCCCcccccccc--cCCcEEEeccccCcccCCcccCCCCceEeccCCcc-ccccccCccCCceE
Q 013207 217 DWFNILVLHQNRV-KTNPKNAINEHFLP--RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSV-ATSLIEGESKPKHV 292 (447)
Q Consensus 217 ~~~~Ill~H~~~~-~~~~~~~i~~~~~~--~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~-~~s~~e~E~~~Kg~ 292 (447)
+.|+|.++|+... +.+.... ..++. -.+|..+|||+|++... ..++...++|||.. +++.++.+....++
T Consensus 78 GqfkIG~chGhqViP~gd~~s--L~~LaRqldvDILl~G~Th~f~Ay----e~eg~ffvnPGSaTGAfn~~~t~~~~PSF 151 (183)
T KOG3325|consen 78 GQFKIGLCHGHQVIPWGDPES--LALLARQLDVDILLTGHTHKFEAY----EHEGKFFVNPGSATGAFNVSDTDIIVPSF 151 (183)
T ss_pred ccEEEEeecCcEeecCCCHHH--HHHHHHhcCCcEEEeCCceeEEEE----EeCCcEEeCCCcccCCCcccccCCCCCce
Confidence 6799999997653 2221111 12222 35899999999998643 23456788999954 45666655567899
Q ss_pred EEEEEeCCee
Q 013207 293 LLLEIKENQY 302 (447)
Q Consensus 293 ~lvei~~~~~ 302 (447)
+|++|.+...
T Consensus 152 vLmDiqg~~~ 161 (183)
T KOG3325|consen 152 VLMDIQGSTV 161 (183)
T ss_pred EEEEecCCEE
Confidence 9999998753
No 105
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=96.83 E-value=0.0033 Score=63.09 Aligned_cols=49 Identities=16% Similarity=0.151 Sum_probs=40.3
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHH
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLV 73 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~ 73 (447)
-++.+++|+|-. +.+|..+++.+.....+.+++.||++|+...|.+++.
T Consensus 43 ~~i~ViGDIHG~------------~~dL~~l~~~~g~~~~~~ylFLGDyVDRG~~s~Evi~ 91 (305)
T cd07416 43 APVTVCGDIHGQ------------FYDLLKLFEVGGSPANTRYLFLGDYVDRGYFSIECVL 91 (305)
T ss_pred CCEEEEEeCCCC------------HHHHHHHHHhcCCCCCceEEEECCccCCCCChHHHHH
Confidence 368999999954 5678888887776677999999999999988887654
No 106
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=96.73 E-value=0.00099 Score=62.73 Aligned_cols=47 Identities=23% Similarity=0.305 Sum_probs=35.5
Q ss_pred EEEEcCCCCCCCCCcccccccHHHHHHHHHHHHH-HcCCCEEEEcCCCCCCCCCC
Q 013207 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPS 68 (447)
Q Consensus 15 ILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~-~~~vD~VliaGDLfd~~~ps 68 (447)
|+++||.|++... ..++.|+++++.+. +.+++.++++|++.+...+.
T Consensus 1 Iv~~Sg~~~~~~~-------~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~ 48 (209)
T PF04042_consen 1 IVFASGPFLDSDN-------LSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPY 48 (209)
T ss_dssp EEEEES--CTTT--------HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHH
T ss_pred CEEEecCccCCCH-------hHHHHHHHHHHhccccCCCcEEEEeCCCcCccccc
Confidence 6899999998432 23788888888888 89999999999999976544
No 107
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=96.51 E-value=0.0054 Score=60.98 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=38.2
Q ss_pred EEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHH
Q 013207 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLV 73 (447)
Q Consensus 14 rILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~ 73 (447)
++.+++|+|-. +..+..+++.+.....+.+|+.||++|+..++.+++.
T Consensus 43 ~i~vvGDIHG~------------~~dL~~ll~~~~~~~~~~~lfLGDyVDRG~~s~evl~ 90 (285)
T cd07415 43 PVTVCGDIHGQ------------FYDLLELFRVGGDPPDTNYLFLGDYVDRGYYSVETFL 90 (285)
T ss_pred CEEEEEeCCCC------------HHHHHHHHHHcCCCCCCeEEEEeEECCCCcCHHHHHH
Confidence 58899999954 5667778877665567789999999999988887653
No 108
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=96.47 E-value=0.0064 Score=60.67 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=39.0
Q ss_pred EEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHH
Q 013207 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLV 73 (447)
Q Consensus 14 rILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~ 73 (447)
++.+++|+|-. +..+..+++.......+-+|+.||++|+...+.+++.
T Consensus 51 ~i~viGDIHG~------------~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~e~i~ 98 (293)
T cd07414 51 PLKICGDIHGQ------------YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETIC 98 (293)
T ss_pred ceEEEEecCCC------------HHHHHHHHHhcCCCCcceEEEEeeEecCCCCcHHHHH
Confidence 68999999954 5677888877766677889999999999988887653
No 109
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=96.47 E-value=0.048 Score=52.96 Aligned_cols=216 Identities=17% Similarity=0.212 Sum_probs=112.8
Q ss_pred EEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEc--CCCCCCCC-----CCHHHHHHHHHHHHHhhcCC
Q 013207 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLG--GDLFHENK-----PSRSTLVKAIEILRRHCLND 86 (447)
Q Consensus 14 rILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~Vlia--GDLfd~~~-----ps~~~l~~~~~~L~~l~~~~ 86 (447)
||+.+.|+=++..........+....|+.+.+...+ .|+++.- +=+.+... +.-.+-...++.|+
T Consensus 1 ti~~~GDi~~~~~~~~~~~~~~~~~~~~~v~~~l~~--aD~~~~NlE~~v~~~~~~~~~~~~f~~~~~~~~~L~------ 72 (250)
T PF09587_consen 1 TIAFVGDIMLGRGVYQRAEKGGFDYIFEDVKPLLQS--ADLVVANLETPVTDSGQPASGYPHFNAPPEILDALK------ 72 (250)
T ss_pred CEEEEeccccCcchhhhcccCChHHHHHHHHHHHhh--CCEEEEEeeecCcCCCCcCCCcceecCCHHHHHHHH------
Confidence 578899999887544322222444567777776654 3654421 11222221 11111112334444
Q ss_pred CCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCC-CcchhhhhhhcCCceEEecceeccCCCccee
Q 013207 87 RPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGV-DNLSAVDILSACNLVNYFGKMVLGGSGVGEI 165 (447)
Q Consensus 87 ~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~-~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i 165 (447)
..++-++.+.-||-.-.+. +....++.|+..|+ .++|.. .+. .-
T Consensus 73 -----------------------------~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi-~~~Gag----~~~-~~ 117 (250)
T PF09587_consen 73 -----------------------------DAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGI-PYVGAG----RNL-EE 117 (250)
T ss_pred -----------------------------HcCCCEEEecCCCCccccHHHHHHHHHHHHHCCC-cEeECc----CCh-HH
Confidence 3578899999999554443 22356778888885 466632 111 11
Q ss_pred EEEEEEEecCCeeEEEEecCCCChHHH-Hh-----hhc----------ChhHHhhccchhhhhccccCceeEEEeecccc
Q 013207 166 TVYPILIRKGSTAVALYGLGNIRDERL-NR-----MFQ----------TPHAVQWMRPEAQEECQVSDWFNILVLHQNRV 229 (447)
Q Consensus 166 ~~~Pi~l~~g~~~vaiyGl~~~~~~~l-~~-----~~~----------~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~ 229 (447)
...|..++.++.+|++.|..+...... .. .+. ....++.+.....+ ......+.|+++|....
T Consensus 118 a~~p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~-~r~~~D~vIv~~HwG~e 196 (250)
T PF09587_consen 118 ARRPAIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIRE-ARKKADVVIVSLHWGIE 196 (250)
T ss_pred hcCeEEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHH-HhcCCCEEEEEeccCCC
Confidence 235778888889999998754321000 00 000 00000111111111 01235689999998543
Q ss_pred cC-CCCCc---ccccccccCCcEEEeccccCcccCCcccCCCCceEeccCCccccccc
Q 013207 230 KT-NPKNA---INEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLI 283 (447)
Q Consensus 230 ~~-~~~~~---i~~~~~~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~ 283 (447)
.. .+..+ +-..++..++|+|+-+|-|.-|.. -+|-|.++.+|++
T Consensus 197 ~~~~p~~~q~~~a~~lidaGaDiIiG~HpHv~q~~----------E~y~~~~I~YSLG 244 (250)
T PF09587_consen 197 YENYPTPEQRELARALIDAGADIIIGHHPHVIQPV----------EIYKGKPIFYSLG 244 (250)
T ss_pred CCCCCCHHHHHHHHHHHHcCCCEEEeCCCCcccce----------EEECCEEEEEeCc
Confidence 21 11111 112356679999999999996532 2355666666653
No 110
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=96.45 E-value=0.014 Score=62.44 Aligned_cols=87 Identities=22% Similarity=0.300 Sum_probs=58.6
Q ss_pred CceEEEEEcCCCCCCC--CC----------------------------ccc-ccccHHHHHHHHHHHHHHc-C-CCEEEE
Q 013207 11 NTVRILVATDCHLGYM--EK----------------------------DEI-RRHDSFEAFEEICSIAEQK-E-VDFVLL 57 (447)
Q Consensus 11 ~~mrILh~SD~HLG~~--~~----------------------------~~~-r~~d~~~~feeil~~a~~~-~-vD~Vli 57 (447)
-++||||+||+|.... .. |.. ..+-.+.+++.+++.+++. + +|+|+.
T Consensus 137 p~~rvlhltDiH~D~~Y~~gs~a~c~~p~ccr~s~~~p~~~~~~Ag~wG~y~~CD~P~~lies~L~~ike~~~~iD~I~w 216 (577)
T KOG3770|consen 137 PTFRVLHLTDIHLDPDYSEGSDADCDCPMCCRNSDGTPSGTKVAAGPWGDYGKCDSPKRLIESALDHIKENHKDIDYIIW 216 (577)
T ss_pred CceeEEEeeccccCcccccCCcccccCccccccCCCCCCCccccCCCCCCcCCCCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 4599999999999742 10 011 2334578999999988774 3 899999
Q ss_pred cCCCCCCCCCCHHHHH-------HHHHHHHHhhcCCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCC
Q 013207 58 GGDLFHENKPSRSTLV-------KAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDD 130 (447)
Q Consensus 58 aGDLfd~~~ps~~~l~-------~~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~ 130 (447)
+||.-... ....+.. +..+.|+++ -.++|||..-||||.
T Consensus 217 TGD~~~H~-~w~~t~~~~l~~~~~l~~~~~e~---------------------------------FpdvpvypalGNhe~ 262 (577)
T KOG3770|consen 217 TGDNVAHD-VWAQTEEENLSMLSRLTSLLSEY---------------------------------FPDVPVYPALGNHEI 262 (577)
T ss_pred eCCCCccc-chhhhHHHHHHHHHHHHHHHHHh---------------------------------CCCCceeeecccCCC
Confidence 99997655 2233222 223333333 137899999999998
Q ss_pred C
Q 013207 131 P 131 (447)
Q Consensus 131 ~ 131 (447)
.
T Consensus 263 ~ 263 (577)
T KOG3770|consen 263 H 263 (577)
T ss_pred C
Confidence 4
No 111
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=96.37 E-value=0.0069 Score=61.05 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=38.0
Q ss_pred EEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHH
Q 013207 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72 (447)
Q Consensus 14 rILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l 72 (447)
++.+++|+|-. +..+.++++.+.....+-.|+.||++|+..++.+++
T Consensus 60 ~i~vvGDIHG~------------~~dL~~l~~~~g~~~~~~ylfLGDyVDRG~~s~evl 106 (320)
T PTZ00480 60 PLKICGDVHGQ------------YFDLLRLFEYGGYPPESNYLFLGDYVDRGKQSLETI 106 (320)
T ss_pred CeEEEeecccC------------HHHHHHHHHhcCCCCcceEEEeceecCCCCCcHHHH
Confidence 58899999954 566777887776666778999999999998888764
No 112
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=96.25 E-value=0.037 Score=53.29 Aligned_cols=143 Identities=17% Similarity=0.140 Sum_probs=75.5
Q ss_pred CCCcEEEECCCCCCCCCCCcc-hhhhhhhcCCceEEecceeccCCCcceeEEEEEEEecCCeeEEEEecCCCChHHHH-h
Q 013207 117 VGLPVFSIHGNHDDPAGVDNL-SAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERLN-R 194 (447)
Q Consensus 117 ~~ipV~~I~GNHD~~~~~~~~-~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~~Pi~l~~g~~~vaiyGl~~~~~~~l~-~ 194 (447)
.++-++.+.+||+.-.+...+ ..++.|..+|+. ++|.. ..... ...|..++.++.+|++.|+......... .
T Consensus 76 ~G~d~~tlaNNH~fD~G~~gl~~t~~~l~~~~i~-~~g~~----~~~~~-~~~~~i~~~~g~kVg~ig~t~~~~~~~~~~ 149 (239)
T cd07381 76 AGFDVVSLANNHTLDYGEEGLLDTLDALDEAGIA-HAGAG----RNLEE-ARRPAILEVNGIKVAFLAYTYGTNGIPLAA 149 (239)
T ss_pred hCCCEEEcccccccccchHHHHHHHHHHHHcCCc-eeECC----CCHHH-hcCcEEEEECCEEEEEEEEECCCCCCcCcc
Confidence 477888888999887665422 334566666653 34432 10001 1235566777889999987532211000 0
Q ss_pred ------hhc-Ch----hHHhhccchhhhhccccCceeEEEeecccccCC-CCC---cccccccccCCcEEEeccccCccc
Q 013207 195 ------MFQ-TP----HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTN-PKN---AINEHFLPRFLDFVVWGHEHECLI 259 (447)
Q Consensus 195 ------~~~-~~----~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~-~~~---~i~~~~~~~~~D~v~~GH~H~~~i 259 (447)
.+. .. +.++.++. ...+.|++.|....... +.. .+-..+...++|+|+-||.|..|.
T Consensus 150 ~~~~~~~~~~~~~~~~~~i~~lr~--------~~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q~ 221 (239)
T cd07381 150 GARPGGVNPLDLERIAADIAEAKK--------KADIVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVIGHHPHVLQG 221 (239)
T ss_pred cCCccccCccCHHHHHHHHHHHhh--------cCCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEEcCCCCcCCC
Confidence 000 00 11222211 24689999997553211 110 011123456899999999998652
Q ss_pred CCcccCCCCceEeccCCccccccc
Q 013207 260 DPQEVPGMGFHLTQPGSSVATSLI 283 (447)
Q Consensus 260 ~pq~~~~~~~~i~ypGS~~~~s~~ 283 (447)
- -+|-|.++.+|++
T Consensus 222 --~--------E~~~~~~I~YSlG 235 (239)
T cd07381 222 --I--------EIYKGKLIFYSLG 235 (239)
T ss_pred --e--------EEECCEEEEEcCC
Confidence 1 2355666666663
No 113
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=96.09 E-value=0.012 Score=58.92 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=37.9
Q ss_pred EEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHH
Q 013207 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLV 73 (447)
Q Consensus 14 rILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~ 73 (447)
++.+++|+|-. +.++..+++.+.....+.+++.||++|+...+.+++.
T Consensus 44 ~i~vvGDIHG~------------~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~evl~ 91 (303)
T PTZ00239 44 PVNVCGDIHGQ------------FYDLQALFKEGGDIPNANYIFIGDFVDRGYNSVETME 91 (303)
T ss_pred CEEEEEeCCCC------------HHHHHHHHHhcCCCCCceEEEeeeEcCCCCCHHHHHH
Confidence 48899999954 5667777776655567889999999999988887653
No 114
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=95.98 E-value=0.012 Score=58.66 Aligned_cols=46 Identities=22% Similarity=0.181 Sum_probs=36.7
Q ss_pred EEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHH
Q 013207 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72 (447)
Q Consensus 15 ILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l 72 (447)
+.+++|+|-. +.+|.++++.+.-...+-+|+.||++|+..++.+++
T Consensus 54 ~~ViGDIHG~------------~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~evl 99 (294)
T PTZ00244 54 VRVCGDTHGQ------------YYDLLRIFEKCGFPPYSNYLFLGDYVDRGKHSVETI 99 (294)
T ss_pred ceeeccCCCC------------HHHHHHHHHHcCCCCcccEEEeeeEecCCCCHHHHH
Confidence 7789999954 567788887776556667889999999998888764
No 115
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=95.91 E-value=0.068 Score=51.55 Aligned_cols=143 Identities=19% Similarity=0.177 Sum_probs=76.5
Q ss_pred CCCcEEEECCCCCCCCCCCc-chhhhhhhcCCceEEecceeccCCCcceeEEEEEEEecCCeeEEEEecCCCChHHH---
Q 013207 117 VGLPVFSIHGNHDDPAGVDN-LSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERL--- 192 (447)
Q Consensus 117 ~~ipV~~I~GNHD~~~~~~~-~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~~Pi~l~~g~~~vaiyGl~~~~~~~l--- 192 (447)
.++-++.+.+||+.-.+... ...++.|+.+|+. ++|... .... ...|+.++.++.+|++.|+-+......
T Consensus 72 ~G~d~~~laNNH~fD~G~~gl~~t~~~l~~a~i~-~~g~~~----~~~~-~~~~~i~~~~g~kIg~ig~t~~~~~~~~~~ 145 (239)
T smart00854 72 AGFDVVSLANNHSLDYGEEGLLDTLAALDAAGIA-HVGAGR----NLAE-ARKPAIVEVKGIKIALLAYTYGTNNGWAAS 145 (239)
T ss_pred hCCCEEEeccCcccccchHHHHHHHHHHHHCCCC-EeeCCC----ChHH-hhCcEEEEECCEEEEEEEEEcCCCCCcccC
Confidence 47778889999998777542 1344556666653 444321 1111 123566677888999998743211000
Q ss_pred ------Hhhhc-Ch----hHHhhccchhhhhccccCceeEEEeecccccCC-CCC---cccccccccCCcEEEeccccCc
Q 013207 193 ------NRMFQ-TP----HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTN-PKN---AINEHFLPRFLDFVVWGHEHEC 257 (447)
Q Consensus 193 ------~~~~~-~~----~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~-~~~---~i~~~~~~~~~D~v~~GH~H~~ 257 (447)
..... .. +.++.++ ....+.|+++|....... +.. .+-..+...++|+|+-||-|..
T Consensus 146 ~~~~g~~~~~~~~~~~i~~~i~~lr--------~~~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG~H~H~~ 217 (239)
T smart00854 146 KDRPGVALLPDLDREKILADIARAR--------KKADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIGHHPHVL 217 (239)
T ss_pred CCCCCeeecCcCCHHHHHHHHHHHh--------ccCCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEcCCCCcC
Confidence 00000 00 1122221 124689999998764221 111 0112334568999999999985
Q ss_pred ccCCcccCCCCceEeccCCccccccc
Q 013207 258 LIDPQEVPGMGFHLTQPGSSVATSLI 283 (447)
Q Consensus 258 ~i~pq~~~~~~~~i~ypGS~~~~s~~ 283 (447)
+.. -+|-|.++.+|++
T Consensus 218 ~~~----------e~~~~~~I~YslG 233 (239)
T smart00854 218 QPI----------EIYKGKLIAYSLG 233 (239)
T ss_pred Cce----------EEECCEEEEEccc
Confidence 421 2345666666664
No 116
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=95.86 E-value=0.021 Score=58.81 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=35.7
Q ss_pred EEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCC-CEEEEcCCCCCCCCCCHHHHH
Q 013207 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPSRSTLV 73 (447)
Q Consensus 14 rILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~v-D~VliaGDLfd~~~ps~~~l~ 73 (447)
++.+++|+|-- +.+|..+++.+.-... +.+|+.||++|+...|.+++.
T Consensus 67 ~i~VvGDIHG~------------~~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~SlEvl~ 115 (377)
T cd07418 67 EVVVVGDVHGQ------------LHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWGLETFL 115 (377)
T ss_pred CEEEEEecCCC------------HHHHHHHHHHhCCCCCCceEEEeccccCCCCChHHHHH
Confidence 68999999953 5667777776543333 458999999999988877653
No 117
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=95.85 E-value=0.022 Score=57.52 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCCCCHHHHH
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK-EVDFVLLGGDLFHENKPSRSTLV 73 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~-~vD~VliaGDLfd~~~ps~~~l~ 73 (447)
.++.+++|+|-. +..|..+++.+.-- .-+.+|+.||+.|+..-|.+++.
T Consensus 51 ~~~~vvGDiHG~------------~~dL~~il~~~g~~~~~~~~lFLGDyVDRG~~s~Evl~ 100 (321)
T cd07420 51 KQVTICGDLHGK------------LDDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILI 100 (321)
T ss_pred CCeEEEEeCCCC------------HHHHHHHHHHcCCCCccceEEEeccccCCCCCcHHHHH
Confidence 378999999954 55667777655322 23679999999999988887653
No 118
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=95.79 E-value=0.02 Score=57.75 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=37.8
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCCCCHHHHHHH
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK-EVDFVLLGGDLFHENKPSRSTLVKA 75 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~-~vD~VliaGDLfd~~~ps~~~l~~~ 75 (447)
.++.+++|+|-. +..|.++++.+.-. .-|.+++.||++|+...|.+++...
T Consensus 60 ~~~~VvGDIHG~------------~~dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll 111 (316)
T cd07417 60 EKITVCGDTHGQ------------FYDLLNIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTL 111 (316)
T ss_pred ceeEEeecccCC------------HHHHHHHHHhcCCCCccCeEEEEeeEecCCCChHHHHHHH
Confidence 579999999954 56677777665321 2357999999999999998875433
No 119
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=95.62 E-value=0.031 Score=56.29 Aligned_cols=48 Identities=19% Similarity=0.100 Sum_probs=33.7
Q ss_pred EEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcC--------CCEEEEcCCCCCCCCCCHHHHH
Q 013207 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKE--------VDFVLLGGDLFHENKPSRSTLV 73 (447)
Q Consensus 14 rILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~--------vD~VliaGDLfd~~~ps~~~l~ 73 (447)
.+.+++|+|-. +..|.++++.+.... ..-+|+.||++|+...|.+++.
T Consensus 49 ~~~viGDIHG~------------~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp~s~evl~ 104 (311)
T cd07419 49 PIKIFGDIHGQ------------FGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETIC 104 (311)
T ss_pred CEEEEEeccCC------------HHHHHHHHHHcCCCcccccCCCcCceEEEECCccCCCCChHHHHH
Confidence 57888999954 566777776553110 1247899999999988887654
No 120
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=95.10 E-value=0.053 Score=48.73 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=33.7
Q ss_pred HHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCC
Q 013207 48 EQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGN 127 (447)
Q Consensus 48 ~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GN 127 (447)
+....|++|+.||+|....-+ +-+..|..| ...+.+|+|.+-||
T Consensus 23 k~gpFd~~ic~Gdff~~~~~~--------~~~~~y~~g----------------------------~~~~pipTyf~ggn 66 (150)
T cd07380 23 KKGPFDALLCVGDFFGDDEDD--------EELEAYKDG----------------------------SKKVPIPTYFLGGN 66 (150)
T ss_pred ccCCeeEEEEecCccCCccch--------hhHHHHhcC----------------------------CccCCCCEEEECCC
Confidence 456899999999999876443 234454332 23678999999999
Q ss_pred CC
Q 013207 128 HD 129 (447)
Q Consensus 128 HD 129 (447)
|.
T Consensus 67 ~~ 68 (150)
T cd07380 67 NP 68 (150)
T ss_pred CC
Confidence 96
No 121
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=94.41 E-value=0.21 Score=52.46 Aligned_cols=111 Identities=17% Similarity=0.321 Sum_probs=64.7
Q ss_pred CCCCCCceEEEEEcCCCCCCCCCc----------c--------ccccc--HHHHHHHHHHHHH----HcCCCEEEEcCCC
Q 013207 6 REDIANTVRILVATDCHLGYMEKD----------E--------IRRHD--SFEAFEEICSIAE----QKEVDFVLLGGDL 61 (447)
Q Consensus 6 ~~~~~~~mrILh~SD~HLG~~~~~----------~--------~r~~d--~~~~feeil~~a~----~~~vD~VliaGDL 61 (447)
......-.+|.++||+|+--.+.. + .|-.. +-..++.+++.++ ....||++-+||.
T Consensus 30 ~~~~~~l~~f~~~tDvHi~D~esP~r~~~l~~~~~~~~~~~s~y~P~~~~t~~v~~AaVqtvNal~~~~p~df~is~GD~ 109 (492)
T TIGR03768 30 SGTGKRLLRFFTISDVHITDKESPNQLIYLQQTEPAAAPNTSIYSPVMLYSTQVLDAAVQTVNDLHKRDRFDFGISLGDA 109 (492)
T ss_pred ccccchheeeeeeeeeeeccccCchhhhhhcccccccCCCccccChhHHHHHHHHHHHHHHHHHhhcCCCceEEEecccc
Confidence 334445689999999999654321 0 11111 2235666666654 4679999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCCCcceeeechhh-------hcccccccccccCCCCCCCCCcEEEECCCCCCCC
Q 013207 62 FHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQA-------VNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (447)
Q Consensus 62 fd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~lsd~~-------~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~ 132 (447)
.|.. +...+.-.+.+|. | ++| -.+.+ +-|+.. |..+-++..+|+|.+.||||.-.
T Consensus 110 ~nn~--~~nElrWyidvld----G-~~I----~p~SG~~~~~e~v~~~~p-----~~a~GL~~~iPWY~v~GNHD~~~ 171 (492)
T TIGR03768 110 CNST--QYNELRWYIDVLD----G-KPI----TPSSGAHAGADTIDYQKP-----FQAAGLDKSIPWYQVLGNHDHFW 171 (492)
T ss_pred ccch--hHHHHHHHHHHhc----C-Cee----ccCCCCCCCccCCCCCCc-----ccccccCCCCceEEeecCCcccc
Confidence 9965 3444444444443 2 121 11111 123322 23334566799999999999843
No 122
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=93.93 E-value=0.22 Score=50.35 Aligned_cols=38 Identities=32% Similarity=0.517 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHc---CCCEEEEcCCCC
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK---EVDFVLLGGDLF 62 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~---~vD~VliaGDLf 62 (447)
|||.+-.=.|-- +...-+-+..+.+. +||++|++||+=
T Consensus 1 MrIaVqGCcHG~------------Ld~iYkti~~~ek~~~tkVDLLlccGDFQ 41 (456)
T KOG2863|consen 1 MRIAVQGCCHGE------------LDNIYKTISLIEKRGNTKVDLLLCCGDFQ 41 (456)
T ss_pred Cceeeecccchh------------HHHHHHHHHHHHHcCCCCccEEEEccchH
Confidence 677777767732 22233344566666 899999999983
No 123
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=85.88 E-value=1.9 Score=41.04 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=36.3
Q ss_pred EEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHH
Q 013207 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (447)
Q Consensus 15 ILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~ 81 (447)
+-++.|+|- +|--+.++....-+------++.||..|+..-|.++....+-+..+
T Consensus 48 VTvCGDIHG------------QFyDL~eLFrtgG~vP~tnYiFmGDfVDRGyySLEtfT~l~~Lkar 102 (306)
T KOG0373|consen 48 VTVCGDIHG------------QFYDLLELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTLLLLLKAR 102 (306)
T ss_pred eeEeeccch------------hHHHHHHHHHhcCCCCCcceEEeccccccccccHHHHHHHHHHhhc
Confidence 457899993 2445566665554432223678899999999999887655544443
No 124
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=83.81 E-value=4.6 Score=40.15 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=34.8
Q ss_pred CCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHH-----HcCCCEEEEcCCCCCCC
Q 013207 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-----QKEVDFVLLGGDLFHEN 65 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~-----~~~vD~VliaGDLfd~~ 65 (447)
....+|++.||.||+.. ..+++|+.+++.-. ++-|-++|+.|++....
T Consensus 25 ~~~~~~VilSDV~LD~p--------~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p 77 (291)
T PTZ00235 25 DKRHNWIIMHDVYLDSP--------YTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLK 77 (291)
T ss_pred CCceEEEEEEeeccCCH--------HHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCc
Confidence 34478899999999854 34667777777653 23488999999997664
No 125
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=83.74 E-value=2.4 Score=41.06 Aligned_cols=47 Identities=23% Similarity=0.219 Sum_probs=31.0
Q ss_pred EEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHH
Q 013207 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLV 73 (447)
Q Consensus 15 ILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~ 73 (447)
+.++.|+|- +|.-+-+++++-..-.-.--|+.||..|+..-|.+++.
T Consensus 45 vtvcGDIHG------------Qf~Dllelf~igG~~~~t~YLFLGDyVDRG~~SvEt~l 91 (303)
T KOG0372|consen 45 VTVCGDIHG------------QFYDLLELFRIGGDVPETNYLFLGDYVDRGYYSVETFL 91 (303)
T ss_pred cEEeecccc------------hHHHHHHHHHhCCCCCCCceEeecchhccccchHHHHH
Confidence 467899993 24444455555433222336889999999999988754
No 126
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=81.29 E-value=1.8 Score=47.15 Aligned_cols=38 Identities=16% Similarity=0.359 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHh
Q 013207 41 EEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (447)
Q Consensus 41 eeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l 82 (447)
..+..++++.-||-+=+.||+||+. |.+.. .|+.|..+
T Consensus 174 ~al~~lIqrL~VDhLHIvGDIyDRG-p~pd~---ImD~Lm~~ 211 (640)
T PF06874_consen 174 IALSELIQRLAVDHLHIVGDIYDRG-PRPDK---IMDRLMNY 211 (640)
T ss_pred HHHHHHHHHHhhhheeecccccCCC-CChhH---HHHHHhcC
Confidence 4455556677899999999999998 45443 46666654
No 127
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=80.33 E-value=19 Score=35.51 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=26.6
Q ss_pred CCCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC
Q 013207 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENK 66 (447)
Q Consensus 9 ~~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ 66 (447)
..+..|++-+||+|--... |- .--.=|+++++||...-..
T Consensus 58 ~~~~~r~VcisdtH~~~~~---------------i~---~~p~gDvlihagdfT~~g~ 97 (305)
T KOG3947|consen 58 GPGYARFVCISDTHELTFD---------------IN---DIPDGDVLIHAGDFTNLGL 97 (305)
T ss_pred CCCceEEEEecCcccccCc---------------cc---cCCCCceEEeccCCccccC
Confidence 3566899999999942110 00 1235688999999987654
No 128
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.91 E-value=11 Score=39.67 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=33.4
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcC-CCEEEEcCCCCCCCCCC
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKE-VDFVLLGGDLFHENKPS 68 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~-vD~VliaGDLfd~~~ps 68 (447)
.|||++.|.-- +.-+.|+.|-+.-++.+ .|++++.|++|....-+
T Consensus 6 ~kILv~Gd~~G-----------r~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~ 51 (528)
T KOG2476|consen 6 AKILVCGDVEG-----------RFDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQN 51 (528)
T ss_pred ceEEEEcCccc-----------cHHHHHHHHHHHhhcCCCceEEEEecccCCCccch
Confidence 69999999742 12356777777777776 89999999999974333
No 129
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=76.90 E-value=10 Score=35.91 Aligned_cols=58 Identities=24% Similarity=0.426 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcceeeechhhhcccccccccccCCCCCCC
Q 013207 38 EAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNV 117 (447)
Q Consensus 38 ~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~ 117 (447)
+.+++++..+.+.+.|+|+++|=. ....+.+.++++.+++. .
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~----gvt~~~~~~~v~~ik~~----------------------------------~ 52 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSL----GIVESNLDQTVKKIKKI----------------------------------T 52 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcC----CCCHHHHHHHHHHHHhh----------------------------------c
Confidence 456667777888899999999972 12445566667777763 4
Q ss_pred CCcEEEECCCCCCCCC
Q 013207 118 GLPVFSIHGNHDDPAG 133 (447)
Q Consensus 118 ~ipV~~I~GNHD~~~~ 133 (447)
.+||++-|||++.-+.
T Consensus 53 ~lPvilfp~~~~~i~~ 68 (205)
T TIGR01769 53 NLPVILFPGNVNGLSR 68 (205)
T ss_pred CCCEEEECCCccccCc
Confidence 7999999999997654
No 130
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=70.46 E-value=5.5 Score=42.11 Aligned_cols=44 Identities=27% Similarity=0.365 Sum_probs=18.3
Q ss_pred CCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCC
Q 013207 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHEN 65 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~ 65 (447)
...+||+..|+.+..... +.++..+. +++++|++|+.||..-..
T Consensus 103 ~~~~r~a~~SC~~~~~~~---------~~~~~~~a---~~~~~D~~l~lGD~IY~d 146 (453)
T PF09423_consen 103 PDPFRFAFGSCQNYEDGY---------FPAYRRIA---ERDDPDFVLHLGDQIYED 146 (453)
T ss_dssp ---EEEEEE----CCC------------HHHHHHT---T-S--SEEEE-S-SS---
T ss_pred CCceEEEEECCCCcccCh---------HHHHHhhh---ccCCCcEEEEeCCeeecc
Confidence 345999999999864211 34444333 326899999999975443
No 131
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=69.79 E-value=6.2 Score=40.13 Aligned_cols=74 Identities=20% Similarity=0.211 Sum_probs=47.3
Q ss_pred EEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCE-EEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCccee
Q 013207 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDF-VLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (447)
Q Consensus 14 rILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~-VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~ 92 (447)
-|.++.|+|-- +.-+-.+++.+....++. .|+.||..|+..-|.+++ -+|-.|.
T Consensus 60 PV~i~GDiHGq------------~~DLlrlf~~~g~~pp~~~ylFLGDYVDRG~~slE~i----~LL~a~K--------- 114 (331)
T KOG0374|consen 60 PVKIVGDIHGQ------------FGDLLRLFDLLGSFPPDQNYVFLGDYVDRGKQSLETI----CLLFALK--------- 114 (331)
T ss_pred CEEEEccCcCC------------HHHHHHHHHhcCCCCCcccEEEecccccCCccceEEe----ehhhhhh---------
Confidence 57889999953 223344444444222443 789999999998888753 3343331
Q ss_pred eechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCC
Q 013207 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGV 134 (447)
Q Consensus 93 ~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~ 134 (447)
+ ..+-.||.+.|||......
T Consensus 115 ---------------i-------~yp~~~~lLRGNHE~~~in 134 (331)
T KOG0374|consen 115 ---------------I-------KYPENVFLLRGNHECASIN 134 (331)
T ss_pred ---------------h-------hCCceEEEecccccccccc
Confidence 1 1244599999999987543
No 132
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=68.43 E-value=3.7 Score=38.21 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=21.4
Q ss_pred ccCCcEEEeccccCcccCCcccCCCCceEeccCC
Q 013207 243 PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (447)
Q Consensus 243 ~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS 276 (447)
..++|++++||+|.+... .. .+...+.+||
T Consensus 187 ~~~~~~~i~GH~H~~~~~--~~--~~~~~~n~G~ 216 (217)
T cd07398 187 RKGVDGVICGHTHRPALH--EL--DGKLYINLGD 216 (217)
T ss_pred hcCCCEEEECCCCCCCeE--EE--CCEEEEECCC
Confidence 467999999999997642 22 2356677776
No 133
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=66.28 E-value=23 Score=34.17 Aligned_cols=56 Identities=20% Similarity=0.340 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcceeeechhhhcccccccccccCCCCCCCCC
Q 013207 40 FEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGL 119 (447)
Q Consensus 40 feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~i 119 (447)
-.++++.+.+-+.|+|+++|=.= ...+.+..+++.+++ +..+
T Consensus 30 ~~ei~~~~~~~GTDaImIGGS~g----vt~~~~~~~v~~ik~----------------------------------~~~l 71 (240)
T COG1646 30 ADEIAEAAAEAGTDAIMIGGSDG----VTEENVDNVVEAIKE----------------------------------RTDL 71 (240)
T ss_pred cHHHHHHHHHcCCCEEEECCccc----ccHHHHHHHHHHHHh----------------------------------hcCC
Confidence 46788888899999999999542 233445667777774 3579
Q ss_pred cEEEECCCCCCCCC
Q 013207 120 PVFSIHGNHDDPAG 133 (447)
Q Consensus 120 pV~~I~GNHD~~~~ 133 (447)
||+.-||||..-+.
T Consensus 72 PvilfP~~~~~is~ 85 (240)
T COG1646 72 PVILFPGSPSGISP 85 (240)
T ss_pred CEEEecCChhccCc
Confidence 99999999987654
No 134
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=64.71 E-value=21 Score=34.28 Aligned_cols=55 Identities=29% Similarity=0.394 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcceeeechhhhcccccccccccCCCCCCCCC
Q 013207 40 FEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGL 119 (447)
Q Consensus 40 feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~i 119 (447)
..++++.+.+.+.|+|+++|=.-- ..+.+..+++.++++ .+
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~v----t~~~~~~~v~~ik~~-----------------------------------~l 56 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGV----TYEKTDTLIEALRRY-----------------------------------GL 56 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcc----cHHHHHHHHHHHhcc-----------------------------------CC
Confidence 345777778889999999996522 233445566667653 59
Q ss_pred cEEEECCCCCCCCC
Q 013207 120 PVFSIHGNHDDPAG 133 (447)
Q Consensus 120 pV~~I~GNHD~~~~ 133 (447)
||+.-|||++.-..
T Consensus 57 Pvilfp~~~~~i~~ 70 (223)
T TIGR01768 57 PIILFPSNPTNVSR 70 (223)
T ss_pred CEEEeCCCccccCc
Confidence 99999999997554
No 135
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=62.02 E-value=11 Score=39.75 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=23.9
Q ss_pred HHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHh
Q 013207 45 SIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (447)
Q Consensus 45 ~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l 82 (447)
..+++..||-+=+.||+||+. |-+.- .|+.|-+|
T Consensus 184 ~~iqrLvVDhLHiVGDIyDRG-P~pd~---Imd~L~~y 217 (648)
T COG3855 184 YLIQRLVVDHLHIVGDIYDRG-PYPDK---IMDTLINY 217 (648)
T ss_pred HHHHHHhhhheeeecccccCC-CCchH---HHHHHhhc
Confidence 344567899999999999987 44432 45656554
No 136
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=61.03 E-value=20 Score=34.54 Aligned_cols=53 Identities=25% Similarity=0.380 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcceeeechhhhcccccccccccCCCCCCCCCc
Q 013207 41 EEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLP 120 (447)
Q Consensus 41 eeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ip 120 (447)
+++++.+.+.+.|+|+++|=. . ..++..+.+++++. ..+|
T Consensus 22 ~~~~~~~~~~gtDai~VGGS~-~-----~~~~d~vv~~ik~~----------------------------------~~lP 61 (230)
T PF01884_consen 22 EEALEAACESGTDAIIVGGSD-T-----GVTLDNVVALIKRV----------------------------------TDLP 61 (230)
T ss_dssp HHHHHHHHCTT-SEEEEE-ST-H-----CHHHHHHHHHHHHH----------------------------------SSS-
T ss_pred HHHHHHHHhcCCCEEEECCCC-C-----ccchHHHHHHHHhc----------------------------------CCCC
Confidence 566777788999999999977 1 23456677888874 3799
Q ss_pred EEEECCCCCCCCC
Q 013207 121 VFSIHGNHDDPAG 133 (447)
Q Consensus 121 V~~I~GNHD~~~~ 133 (447)
|+.-|||++.-+.
T Consensus 62 vilfPg~~~~vs~ 74 (230)
T PF01884_consen 62 VILFPGSPSQVSP 74 (230)
T ss_dssp EEEETSTCCG--T
T ss_pred EEEeCCChhhcCc
Confidence 9999999988654
No 137
>PRK09982 universal stress protein UspD; Provisional
Probab=57.19 E-value=26 Score=30.44 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCCEEEEc
Q 013207 40 FEEICSIAEQKEVDFVLLG 58 (447)
Q Consensus 40 feeil~~a~~~~vD~Vlia 58 (447)
-+.|++.|.+.++|+|+++
T Consensus 92 ~~~I~~~A~~~~aDLIVmG 110 (142)
T PRK09982 92 PETLLEIMQKEQCDLLVCG 110 (142)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 3788899999999998885
No 138
>PRK15005 universal stress protein F; Provisional
Probab=53.90 E-value=31 Score=29.45 Aligned_cols=19 Identities=16% Similarity=0.412 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCCEEEEc
Q 013207 40 FEEICSIAEQKEVDFVLLG 58 (447)
Q Consensus 40 feeil~~a~~~~vD~Vlia 58 (447)
.+.|++.|.+.++|+|+++
T Consensus 96 ~~~I~~~a~~~~~DLIV~G 114 (144)
T PRK15005 96 KDRILELAKKIPADMIIIA 114 (144)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 4678888888889988885
No 139
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=53.76 E-value=25 Score=38.24 Aligned_cols=58 Identities=22% Similarity=0.169 Sum_probs=36.4
Q ss_pred CCceEEEEEcCCCCCCCCCcc-cccc----cHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCCCC
Q 013207 10 ANTVRILVATDCHLGYMEKDE-IRRH----DSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKP 67 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~-~r~~----d~~~~feeil~~a~~~~vD~Vli-aGDLfd~~~p 67 (447)
...++|+|+||+|-+-..+-+ .+.+ +....+..+-++|.+.++|.+++ +||+.|.+.-
T Consensus 40 ~~~~nf~hTtdthG~~~~h~~~~~~~~~~G~f~~f~~~~k~~a~~~~~dvl~~dtGD~hdGtg~ 103 (602)
T KOG4419|consen 40 WGQPNFIHTTDTHGWLGSHLRDARYDADFGDFAAFALRMKELADRKGVDVLLVDTGDLHDGTGL 103 (602)
T ss_pred cccccceeeccccccccccccchhhhhhhhhHHHHHHHHHHHHhccCCCEEEEecccccCCcee
Confidence 345899999999976542111 1111 12223355556688889998655 8999887643
No 140
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=51.31 E-value=27 Score=34.28 Aligned_cols=45 Identities=27% Similarity=0.280 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCE-EEEcCCCCCCCCCCHHHH
Q 013207 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDF-VLLGGDLFHENKPSRSTL 72 (447)
Q Consensus 15 ILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~-VliaGDLfd~~~ps~~~l 72 (447)
..+++|.|-- |.-|-|++.+- -..+|. .++.||..|...-|.+++
T Consensus 62 vtvcGDvHGq------------f~dl~ELfkiG-G~~pdtnylfmGDyvdrGy~SvetV 107 (319)
T KOG0371|consen 62 VTVCGDVHGQ------------FHDLIELFKIG-GLAPDTNYLFMGDYVDRGYYSVETV 107 (319)
T ss_pred eEEecCcchh------------HHHHHHHHHcc-CCCCCcceeeeeeecccccchHHHH
Confidence 5678899843 33344444222 233444 688899999998777754
No 141
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=48.15 E-value=19 Score=29.36 Aligned_cols=39 Identities=23% Similarity=0.183 Sum_probs=24.0
Q ss_pred EEEeecccccCCCCCc---------ccccccccCCcEEEeccccCccc
Q 013207 221 ILVLHQNRVKTNPKNA---------INEHFLPRFLDFVVWGHEHECLI 259 (447)
Q Consensus 221 Ill~H~~~~~~~~~~~---------i~~~~~~~~~D~v~~GH~H~~~i 259 (447)
|++.|.+......... +...+...+.++++.||.|..+.
T Consensus 70 i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~ 117 (131)
T cd00838 70 ILLTHGPPYDPLDELSPDEDPGSEALLELLEKYGVDLVLSGHTHVYER 117 (131)
T ss_pred EEEeccCCCCCchhhcccchhhHHHHHHHHHHhCCCEEEeCCeecccc
Confidence 8888887754321110 01112345799999999999754
No 142
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=47.65 E-value=78 Score=33.81 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=12.5
Q ss_pred CCcEEEeccccCcccC
Q 013207 245 FLDFVVWGHEHECLID 260 (447)
Q Consensus 245 ~~D~v~~GH~H~~~i~ 260 (447)
.+-.|++||.|...+.
T Consensus 399 nVla~LsGHvHrn~v~ 414 (492)
T TIGR03768 399 NLLMWIAGHRHLNTVK 414 (492)
T ss_pred CeEEEEcCCccccccc
Confidence 4668899999987654
No 143
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=47.47 E-value=73 Score=25.43 Aligned_cols=52 Identities=17% Similarity=0.358 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcceeeechhhhcccccccccccCCCCCCCCC
Q 013207 40 FEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGL 119 (447)
Q Consensus 40 feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~i 119 (447)
.+++++.+.+..+|+|++-.++-+.+ . ..+++.|++. ...+
T Consensus 32 ~~~~~~~~~~~~~d~iiid~~~~~~~---~---~~~~~~i~~~---------------------------------~~~~ 72 (112)
T PF00072_consen 32 GEEALELLKKHPPDLIIIDLELPDGD---G---LELLEQIRQI---------------------------------NPSI 72 (112)
T ss_dssp HHHHHHHHHHSTESEEEEESSSSSSB---H---HHHHHHHHHH---------------------------------TTTS
T ss_pred HHHHHHHhcccCceEEEEEeeecccc---c---cccccccccc---------------------------------cccc
Confidence 57778888899999999998888743 1 2244555553 2478
Q ss_pred cEEEECCCCCC
Q 013207 120 PVFSIHGNHDD 130 (447)
Q Consensus 120 pV~~I~GNHD~ 130 (447)
|++++.+++|.
T Consensus 73 ~ii~~t~~~~~ 83 (112)
T PF00072_consen 73 PIIVVTDEDDS 83 (112)
T ss_dssp EEEEEESSTSH
T ss_pred cEEEecCCCCH
Confidence 99999977764
No 144
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=47.34 E-value=57 Score=25.34 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=27.9
Q ss_pred CceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCC
Q 013207 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGD 60 (447)
Q Consensus 11 ~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGD 60 (447)
..||||++.--... | ...+...|+.+.+..++++|+.|.
T Consensus 2 ~g~rVli~GgR~~~----------D-~~~i~~~Ld~~~~~~~~~~lvhGg 40 (71)
T PF10686_consen 2 EGMRVLITGGRDWT----------D-HELIWAALDKVHARHPDMVLVHGG 40 (71)
T ss_pred CCCEEEEEECCccc----------c-HHHHHHHHHHHHHhCCCEEEEECC
Confidence 46899999765543 1 344666677777888999988884
No 145
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=47.26 E-value=82 Score=28.45 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=22.1
Q ss_pred ccHHHHHHHHHHHHHH-cCCCEEEEcCCCCCC
Q 013207 34 HDSFEAFEEICSIAEQ-KEVDFVLLGGDLFHE 64 (447)
Q Consensus 34 ~d~~~~feeil~~a~~-~~vD~VliaGDLfd~ 64 (447)
.|....+.+.++.+.+ .++|+||.+|-.=-.
T Consensus 45 ~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g 76 (163)
T TIGR02667 45 KDDIYQIRAQVSAWIADPDVQVILITGGTGFT 76 (163)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCcCCC
Confidence 3555667777776653 689999999987433
No 146
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=47.17 E-value=80 Score=27.79 Aligned_cols=40 Identities=15% Similarity=0.038 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHh
Q 013207 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (447)
Q Consensus 39 ~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l 82 (447)
+-+++++.|+++++|+|.++.=+.+ +...+.++++.|++.
T Consensus 40 ~~e~~v~aa~~~~adiVglS~l~~~----~~~~~~~~~~~l~~~ 79 (134)
T TIGR01501 40 PQEEFIKAAIETKADAILVSSLYGH----GEIDCKGLRQKCDEA 79 (134)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccc----CHHHHHHHHHHHHHC
Confidence 4589999999999999999876643 344566677777763
No 147
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=47.12 E-value=54 Score=31.68 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=35.7
Q ss_pred HHHHHcCCCEEEEcCCC-CCCCCCCHHHHHHHHHHHHHhhcCCCCcceeeechhhhcccccccccccCCCCCCCCCcEEE
Q 013207 45 SIAEQKEVDFVLLGGDL-FHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFS 123 (447)
Q Consensus 45 ~~a~~~~vD~VliaGDL-fd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~ 123 (447)
+.+.+.+.|+|+++|=. .. .+.+..+++.+++ ..+||+.
T Consensus 26 ~~~~~~gtdai~vGGS~~vt-----~~~~~~~v~~ik~-----------------------------------~~lPvil 65 (232)
T PRK04169 26 EAICESGTDAIIVGGSDGVT-----EENVDELVKAIKE-----------------------------------YDLPVIL 65 (232)
T ss_pred HHHHhcCCCEEEEcCCCccc-----hHHHHHHHHHHhc-----------------------------------CCCCEEE
Confidence 56677899999999965 33 3344455566664 3689999
Q ss_pred ECCCCCCCCC
Q 013207 124 IHGNHDDPAG 133 (447)
Q Consensus 124 I~GNHD~~~~ 133 (447)
-|||++.-+.
T Consensus 66 fp~~~~~i~~ 75 (232)
T PRK04169 66 FPGNIEGISP 75 (232)
T ss_pred eCCCccccCc
Confidence 9999988654
No 148
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=46.38 E-value=60 Score=31.06 Aligned_cols=56 Identities=29% Similarity=0.383 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcceeeechhhhcccccccccccCCCCCCCCC
Q 013207 40 FEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGL 119 (447)
Q Consensus 40 feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~i 119 (447)
.+++.+.|.+.+.|+|+++|=.-- + .++..+++++++.+ + .+
T Consensus 14 ~~~~~~~~~~~gtdai~vGGS~~v----~-~~~~~~~~~ik~~~--------------------------------~-~~ 55 (219)
T cd02812 14 DEEIAKLAEESGTDAIMVGGSDGV----S-STLDNVVRLIKRIR--------------------------------R-PV 55 (219)
T ss_pred HHHHHHHHHhcCCCEEEECCccch----h-hhHHHHHHHHHHhc--------------------------------C-CC
Confidence 345666677788999999996522 2 45566778888752 2 58
Q ss_pred cEEEECCCCCCCCC
Q 013207 120 PVFSIHGNHDDPAG 133 (447)
Q Consensus 120 pV~~I~GNHD~~~~ 133 (447)
||+.-|||++.-..
T Consensus 56 Pvilfp~~~~~i~~ 69 (219)
T cd02812 56 PVILFPSNPEAVSP 69 (219)
T ss_pred CEEEeCCCccccCc
Confidence 99999999987543
No 149
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=45.23 E-value=1.5e+02 Score=25.90 Aligned_cols=40 Identities=18% Similarity=0.070 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHh
Q 013207 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (447)
Q Consensus 39 ~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l 82 (447)
.-+++++.|.++++|+|.+++=+-+ +...+.++++.|++.
T Consensus 38 ~~e~~v~aa~~~~adiVglS~L~t~----~~~~~~~~~~~l~~~ 77 (128)
T cd02072 38 PQEEFIDAAIETDADAILVSSLYGH----GEIDCKGLREKCDEA 77 (128)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccC----CHHHHHHHHHHHHHC
Confidence 4589999999999999999875544 344566677778763
No 150
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=44.19 E-value=92 Score=26.03 Aligned_cols=39 Identities=28% Similarity=0.332 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHH
Q 013207 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (447)
Q Consensus 39 ~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~ 81 (447)
..+++++.+.+.++|+|.++.=..+ ....+.+.++.+++
T Consensus 38 ~~~~l~~~~~~~~pdvV~iS~~~~~----~~~~~~~~i~~l~~ 76 (119)
T cd02067 38 PPEEIVEAAKEEDADAIGLSGLLTT----HMTLMKEVIEELKE 76 (119)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccc----cHHHHHHHHHHHHH
Confidence 4678999999999999999876433 33445556666765
No 151
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=42.08 E-value=86 Score=27.36 Aligned_cols=40 Identities=18% Similarity=0.044 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHH
Q 013207 38 EAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (447)
Q Consensus 38 ~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~ 81 (447)
.+-+++++.|.++++|+|.+++=.-. ....+..+++.|++
T Consensus 40 ~s~e~~v~aa~e~~adii~iSsl~~~----~~~~~~~~~~~L~~ 79 (132)
T TIGR00640 40 QTPEEIARQAVEADVHVVGVSSLAGG----HLTLVPALRKELDK 79 (132)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCchhh----hHHHHHHHHHHHHh
Confidence 45689999999999999999986532 23444555555654
No 152
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=41.15 E-value=1.8e+02 Score=25.69 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCC-CCHHHHHH
Q 013207 35 DSFEAFEEICSIAEQK-EVDFVLLGGDLFHENK-PSRSTLVK 74 (447)
Q Consensus 35 d~~~~feeil~~a~~~-~vD~VliaGDLfd~~~-ps~~~l~~ 74 (447)
|....+.+.++.+.++ ++|+|+.+|-.--... ...+++.+
T Consensus 44 Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~~al~~ 85 (152)
T cd00886 44 DDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVTPEATRP 85 (152)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcHHHHHH
Confidence 4445666766666553 7999999998754432 23444433
No 153
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=41.01 E-value=87 Score=25.52 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCC
Q 013207 39 AFEEICSIAEQKEVDFVLLGGDL 61 (447)
Q Consensus 39 ~feeil~~a~~~~vD~VliaGDL 61 (447)
..+.+++.+.+.++|+|+++--=
T Consensus 90 ~~~~i~~~~~~~~~dliv~G~~~ 112 (140)
T PF00582_consen 90 VADAIIEFAEEHNADLIVMGSRG 112 (140)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSS
T ss_pred cchhhhhccccccceeEEEeccC
Confidence 46889999999999999998765
No 154
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=39.67 E-value=1e+02 Score=26.19 Aligned_cols=39 Identities=31% Similarity=0.275 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHH
Q 013207 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (447)
Q Consensus 39 ~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~ 81 (447)
..+++++.|.+.++|+|.+++-.-. ....+...++.|++
T Consensus 38 p~e~~~~~a~~~~~d~V~iS~~~~~----~~~~~~~~~~~L~~ 76 (122)
T cd02071 38 TPEEIVEAAIQEDVDVIGLSSLSGG----HMTLFPEVIELLRE 76 (122)
T ss_pred CHHHHHHHHHHcCCCEEEEcccchh----hHHHHHHHHHHHHh
Confidence 3578999999999999999987532 33344445555554
No 155
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=38.99 E-value=3.9e+02 Score=26.24 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHH-HHHHHcCCCEEEEcCCCCCCCC
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEIC-SIAEQKEVDFVLLGGDLFHENK 66 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil-~~a~~~~vD~VliaGDLfd~~~ 66 (447)
||||++.|.= |..- ..+..+-| .+-.+.++|||++-|----...
T Consensus 1 mriLfiGDvv-Gk~G---------r~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~ 45 (266)
T COG1692 1 MRILFIGDVV-GKPG---------RKAVKEHLPQLKSKYKIDFVIVNGENAAGGF 45 (266)
T ss_pred CeEEEEeccc-Ccch---------HHHHHHHhHHHHHhhcCcEEEEcCccccCCc
Confidence 8999999984 4322 34444444 4455678999999987655443
No 156
>PRK10116 universal stress protein UspC; Provisional
Probab=38.61 E-value=88 Score=26.57 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCCCEEEEcC
Q 013207 40 FEEICSIAEQKEVDFVLLGG 59 (447)
Q Consensus 40 feeil~~a~~~~vD~VliaG 59 (447)
.+.|++.|.+.++|+|+++-
T Consensus 91 ~~~I~~~a~~~~~DLiV~g~ 110 (142)
T PRK10116 91 SEHILEVCRKHHFDLVICGN 110 (142)
T ss_pred HHHHHHHHHHhCCCEEEEcC
Confidence 35677777777788777743
No 157
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=36.99 E-value=29 Score=32.91 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=21.4
Q ss_pred CCcEEEeccccCcccCCcccCCCCceEeccCCcc
Q 013207 245 FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSV 278 (447)
Q Consensus 245 ~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~ 278 (447)
+.|+|+.||+|...+ ... .+..++.|||..
T Consensus 179 ~~~~vv~GHTh~~~~--~~~--~~~i~IDtGs~~ 208 (218)
T PRK09968 179 GADYFIFGHMMFDNI--QTF--ANQIYIDTGSPK 208 (218)
T ss_pred CCCEEEECCCCcCcc--eeE--CCEEEEECCCCC
Confidence 468999999998653 222 246788999843
No 158
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=36.71 E-value=1.4e+02 Score=25.93 Aligned_cols=60 Identities=13% Similarity=0.157 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcceeeechhhhcccccccccccCCCCCC
Q 013207 37 FEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFN 116 (447)
Q Consensus 37 ~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~ 116 (447)
...|+++++.+.+.++|.|++.- +|+-..+. ..++.+++.++. .
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~--ldRl~R~~---~d~~~~~~~l~~-------------------------------~ 97 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKD--MSRLGRNY---LKVGLYMEILFP-------------------------------K 97 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEec--cchhccCH---HHHHHHHHHHHh-------------------------------h
Confidence 45689999999999999988854 34332232 224455555430 1
Q ss_pred CCCcEEEECCCCCCCC
Q 013207 117 VGLPVFSIHGNHDDPA 132 (447)
Q Consensus 117 ~~ipV~~I~GNHD~~~ 132 (447)
.++.++++.++-|...
T Consensus 98 ~gv~l~~~~~~~d~~~ 113 (140)
T cd03770 98 KGVRFIAINDGVDSAD 113 (140)
T ss_pred cCcEEEEecCCcCCCC
Confidence 3889999988877643
No 159
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=36.38 E-value=48 Score=32.51 Aligned_cols=59 Identities=24% Similarity=0.308 Sum_probs=40.3
Q ss_pred CceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCC--CCCCCCHHHHHHHHHHHHHhh
Q 013207 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLF--HENKPSRSTLVKAIEILRRHC 83 (447)
Q Consensus 11 ~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLf--d~~~ps~~~l~~~~~~L~~l~ 83 (447)
...+|+|+||.- |.. .++.++...+.+||.++++|=.. =..+-+...+..+++-|+++.
T Consensus 175 g~~~i~faSDvq-Gp~-------------~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii 235 (304)
T COG2248 175 GKSSIVFASDVQ-GPI-------------NDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERII 235 (304)
T ss_pred CCeEEEEccccc-CCC-------------ccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHH
Confidence 457899999997 111 24556666677999999999754 112234556777888888764
No 160
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=36.17 E-value=39 Score=33.38 Aligned_cols=69 Identities=20% Similarity=0.357 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCCEEEEcC-CCCCCCC---------CCHHHHHHHHHHHHHhhc---------CCCCcceeeechhhhcc
Q 013207 41 EEICSIAEQKEVDFVLLGG-DLFHENK---------PSRSTLVKAIEILRRHCL---------NDRPVQFQVVSDQAVNF 101 (447)
Q Consensus 41 eeil~~a~~~~vD~VliaG-DLfd~~~---------ps~~~l~~~~~~L~~l~~---------~~~~~~~~~lsd~~~~f 101 (447)
+.|.++..+.+||.|+++| |-+-.+. ....-..++++..|++.- |-..-.||-|=+++.||
T Consensus 143 ~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~D~LVIFAGACQS~yEall~AGANF 222 (283)
T TIGR02855 143 EKVLDLIEEVRPDILVITGHDAYSKNKGNYMDLNAYRHSKYFVETVREARKYVPSLDQLVIFAGACQSHFESLIRAGANF 222 (283)
T ss_pred HHHHHHHHHhCCCEEEEeCchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCcccEEEEcchhHHHHHHHHHcCccc
Confidence 6788899999999999998 3332221 122235567777888752 22233556666677777
Q ss_pred cccccccc
Q 013207 102 QNKFGHVN 109 (447)
Q Consensus 102 ~~~~~~~n 109 (447)
.+.=.+++
T Consensus 223 ASSP~RVl 230 (283)
T TIGR02855 223 ASSPSRVN 230 (283)
T ss_pred cCCccceE
Confidence 65444443
No 161
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=36.15 E-value=1.3e+02 Score=30.82 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=39.3
Q ss_pred CCCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHH
Q 013207 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST 71 (447)
Q Consensus 9 ~~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~ 71 (447)
+...+--+.|.|.-.+.. .-.+.+++++.+++.++| |+++|=-|+-.+-...+
T Consensus 47 ~~eIv~TiiCGDnyf~en---------~eea~~~i~~mv~~~~pD-~viaGPaFnagrYG~ac 99 (349)
T PF07355_consen 47 DAEIVATIICGDNYFNEN---------KEEALKKILEMVKKLKPD-VVIAGPAFNAGRYGVAC 99 (349)
T ss_pred CCEEEEEEEECcchhhhC---------HHHHHHHHHHHHHhcCCC-EEEEcCCcCCchHHHHH
Confidence 344566677888877632 346789999999999999 57899999987654443
No 162
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=35.90 E-value=1.4e+02 Score=31.63 Aligned_cols=90 Identities=12% Similarity=0.135 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCccee
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~ 92 (447)
-+|+..||.||+-. ..+.+++.|++--...-|-+|+++|-+.....-.. +.....+-|+.+..+
T Consensus 283 ~~fVfLSdV~LD~~--------~vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~~~~-s~~~~k~~f~~LA~~------- 346 (525)
T KOG3818|consen 283 TSFVFLSDVFLDDK--------KVMEALRKIFQGYKDAPPTAIILCGSFTSSPRQTS-SSDQLKDGFRWLAAQ------- 346 (525)
T ss_pred ceEEEEehhccccH--------HHHHHHHHHHhhccCCCCeEEEEeccccccccccc-hHHHHHHHHHHHHhh-------
Confidence 36777799999743 23566777777777777889999999876653322 233333444443210
Q ss_pred eechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCC
Q 013207 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGV 134 (447)
Q Consensus 93 ~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~ 134 (447)
-..|. +.+ .....+.|||=-|.....
T Consensus 347 -----l~~~~----------~~~-ekT~fIFVPGP~Dp~~~~ 372 (525)
T KOG3818|consen 347 -----LTCFR----------KDY-EKTQFIFVPGPNDPWVDN 372 (525)
T ss_pred -----ccccc----------ccc-ccceEEEecCCCCCCcCc
Confidence 00111 111 246799999999886553
No 163
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=35.66 E-value=31 Score=34.68 Aligned_cols=21 Identities=29% Similarity=0.631 Sum_probs=15.3
Q ss_pred HcCCCEEEEcCCCCCCCCCCHH
Q 013207 49 QKEVDFVLLGGDLFHENKPSRS 70 (447)
Q Consensus 49 ~~~vD~VliaGDLfd~~~ps~~ 70 (447)
.+++|+ +++|||.+.-..+..
T Consensus 70 ~~dId~-~~aGDLlnQ~i~s~f 90 (329)
T PF07451_consen 70 KEDIDY-LFAGDLLNQIISSSF 90 (329)
T ss_dssp GGG-SE-EEEEETTCCCCHHHH
T ss_pred HHHCeE-EEehhhhhhhHHHHH
Confidence 467885 789999998865554
No 164
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=34.85 E-value=68 Score=32.95 Aligned_cols=46 Identities=20% Similarity=0.157 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHH
Q 013207 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72 (447)
Q Consensus 15 ILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l 72 (447)
|-++.|+|-- |--+-.+.+..-.------|+.||..|+..-|.+++
T Consensus 90 iTVCGDIHGQ------------f~DLmKLFEVGG~PA~t~YLFLGDYVDRGyFSiECv 135 (517)
T KOG0375|consen 90 ITVCGDIHGQ------------FFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECV 135 (517)
T ss_pred eeEecccchH------------HHHHHHHHHccCCcccceeEeeccccccceeeeehH
Confidence 6789999942 222333333322211223578899999998888875
No 165
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=33.88 E-value=58 Score=33.34 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCC
Q 013207 38 EAFEEICSIAEQKEVDFVLLGGDLFH 63 (447)
Q Consensus 38 ~~feeil~~a~~~~vD~VliaGDLfd 63 (447)
..+.++-+...+++||+||+.||-+.
T Consensus 80 ~~~~~~~~~~~~~~Pd~vlv~GD~~~ 105 (365)
T TIGR03568 80 LTIIGFSDAFERLKPDLVVVLGDRFE 105 (365)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCchH
Confidence 45677777888999999999999765
No 166
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=33.62 E-value=88 Score=33.32 Aligned_cols=64 Identities=16% Similarity=0.298 Sum_probs=40.6
Q ss_pred HHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECC
Q 013207 47 AEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHG 126 (447)
Q Consensus 47 a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~G 126 (447)
+.+.+||.||++|=.=-. ..+++..-.++|.++ +..+| ++..|
T Consensus 116 I~~~~PDIILLaGGtDGG---~~e~~l~NA~~La~~---------------------------------~~~~p-IIyAG 158 (463)
T TIGR01319 116 IEESNLDIILFAGGTDGG---EEECGIHNAKMLAEH---------------------------------GLDCA-IIVAG 158 (463)
T ss_pred HhhcCCCEEEEeCCcCCC---chHHHHHHHHHHHhc---------------------------------CCCCc-EEEeC
Confidence 334699999999975332 355554455666653 45678 56789
Q ss_pred CCCCCCCCCcchhhhhhhcCCceEEe
Q 013207 127 NHDDPAGVDNLSAVDILSACNLVNYF 152 (447)
Q Consensus 127 NHD~~~~~~~~~~~d~L~~~g~v~~f 152 (447)
|-|.... ..++|..+++..++
T Consensus 159 N~~a~~~-----V~~il~~~~~~~~i 179 (463)
T TIGR01319 159 NKDIQDE-----VQEIFDHADIFYRI 179 (463)
T ss_pred CHHHHHH-----HHHHHhcCCceEEe
Confidence 9987543 34577766654333
No 167
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=32.55 E-value=36 Score=31.74 Aligned_cols=30 Identities=20% Similarity=0.085 Sum_probs=21.1
Q ss_pred CCcEEEeccccCcccCCcccCCCCceEeccCCcc
Q 013207 245 FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSV 278 (447)
Q Consensus 245 ~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~ 278 (447)
+.++|+.||+|.+.+. .. .+..++.|||-.
T Consensus 168 ~~~~iV~GHTh~~~~~--~~--~~~i~ID~Gsv~ 197 (207)
T cd07424 168 GVDAVVHGHTPVKRPL--RL--GNVLYIDTGAVF 197 (207)
T ss_pred CCCEEEECCCCCCcce--EE--CCEEEEECCCCC
Confidence 3589999999997642 22 245778899743
No 168
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=32.28 E-value=1.1e+02 Score=28.83 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHH
Q 013207 38 EAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72 (447)
Q Consensus 38 ~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l 72 (447)
...+++++.+.+..||.||+ |+.|-.-|....+
T Consensus 24 ~~~~~~l~~~~~~~pd~vl~--dl~d~~mp~~~Gl 56 (207)
T PRK11475 24 SSQSSFQDAMSRISFSAVIF--SLSAMRSERREGL 56 (207)
T ss_pred CCHHHHHHHhccCCCCEEEe--eccccCCCCCCHH
Confidence 33466777777778999988 8888776665543
No 169
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=29.62 E-value=60 Score=32.23 Aligned_cols=68 Identities=24% Similarity=0.353 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCEEEEcC-CCCCCCC---------CCHHHHHHHHHHHHHhhcC---------CCCcceeeechhhhcc
Q 013207 41 EEICSIAEQKEVDFVLLGG-DLFHENK---------PSRSTLVKAIEILRRHCLN---------DRPVQFQVVSDQAVNF 101 (447)
Q Consensus 41 eeil~~a~~~~vD~VliaG-DLfd~~~---------ps~~~l~~~~~~L~~l~~~---------~~~~~~~~lsd~~~~f 101 (447)
+.|.++..+.+||.|+++| |=+-.++ .+..-..++++..|++.-+ -..-.||-|=+++.||
T Consensus 144 ~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~LVIfAGACQS~fEall~AGANF 223 (287)
T PF05582_consen 144 EKIYRLLEEYRPDILVITGHDGYLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDDLVIFAGACQSHFEALLEAGANF 223 (287)
T ss_pred HHHHHHHHHcCCCEEEEeCchhhhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCcccEEEEcchhHHHHHHHHHcCccc
Confidence 6788889999999999998 3332221 1222345667777776432 1223456666666777
Q ss_pred ccccccc
Q 013207 102 QNKFGHV 108 (447)
Q Consensus 102 ~~~~~~~ 108 (447)
.+.=.++
T Consensus 224 ASSP~RV 230 (287)
T PF05582_consen 224 ASSPKRV 230 (287)
T ss_pred cCCccce
Confidence 6544444
No 170
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=29.24 E-value=1e+02 Score=30.73 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCC
Q 013207 37 FEAFEEICSIAEQKEVDFVLLGGDLF 62 (447)
Q Consensus 37 ~~~feeil~~a~~~~vD~VliaGDLf 62 (447)
.....++.+...+.++|+|+..||.+
T Consensus 74 ~~~~~~l~~~l~~~~pDvV~~~g~~~ 99 (363)
T cd03786 74 AGLLIGLEAVLLEEKPDLVLVLGDTN 99 (363)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCch
Confidence 34567777788889999999999753
No 171
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=28.42 E-value=1.3e+02 Score=28.06 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=15.7
Q ss_pred CCCcEEEECCCCCCCCCCC
Q 013207 117 VGLPVFSIHGNHDDPAGVD 135 (447)
Q Consensus 117 ~~ipV~~I~GNHD~~~~~~ 135 (447)
..+|+++|--+||.....+
T Consensus 88 ~~~p~~~iwDDHDi~~n~~ 106 (228)
T cd07389 88 AQVPTIGIWDDHDIGDNWG 106 (228)
T ss_pred hcCCEEEeccccccccccc
Confidence 5689999999999876554
No 172
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=27.71 E-value=2.4e+02 Score=24.64 Aligned_cols=39 Identities=18% Similarity=0.065 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHH
Q 013207 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (447)
Q Consensus 39 ~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~ 81 (447)
..+++++.|.+++||+|.++-=+.+ ....+..+++.|++
T Consensus 42 p~e~i~~~a~~~~~d~V~lS~~~~~----~~~~~~~~~~~L~~ 80 (137)
T PRK02261 42 SQEEFIDAAIETDADAILVSSLYGH----GEIDCRGLREKCIE 80 (137)
T ss_pred CHHHHHHHHHHcCCCEEEEcCcccc----CHHHHHHHHHHHHh
Confidence 3689999999999999999765553 34445556666665
No 173
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=27.49 E-value=1.6e+02 Score=30.94 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=39.4
Q ss_pred CCCCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHH
Q 013207 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRS 70 (447)
Q Consensus 8 ~~~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~ 70 (447)
.+...+.-+.|.|..++.. .-.+.+++++.+++.++| |+++|=-|+-.+-...
T Consensus 42 ~~~eVvaTiiCGDnYf~en---------~eea~~~i~~mv~k~~pD-v~iaGPaFNagrYG~a 94 (431)
T TIGR01917 42 EDAEIVATVVCGDSFFGEN---------LEEAKAKVLEMIKGANPD-IFIAGPAFNAGRYGMA 94 (431)
T ss_pred CCCEEEEEEEECchhhhhC---------HHHHHHHHHHHHHhcCCC-EEEEcCccCCccHHHH
Confidence 3455566678888877632 346779999999999999 5789999998754443
No 174
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=27.29 E-value=44 Score=28.31 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCC
Q 013207 40 FEEICSIAEQKEVDFVLLGGDLFHENKP 67 (447)
Q Consensus 40 feeil~~a~~~~vD~VliaGDLfd~~~p 67 (447)
++++.+.+....||.+|++=|++.....
T Consensus 26 ~~eV~~Al~~GaV~~LlI~d~l~~~~~~ 53 (113)
T PF03465_consen 26 IEEVKKALEMGAVETLLISDDLFRSRDV 53 (113)
T ss_dssp HHHHHHHHHTT-EEEEEEEHHHHTESCH
T ss_pred HHHHHHHHHhCCCcEEEEecccccccce
Confidence 4778888888899999999999987654
No 175
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=25.29 E-value=3.6e+02 Score=24.05 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHcCCCEEEEcC
Q 013207 39 AFEEICSIAEQKEVDFVLLGG 59 (447)
Q Consensus 39 ~feeil~~a~~~~vD~VliaG 59 (447)
..+.+.+.+.+++||+|.++|
T Consensus 51 ~~~~l~~~i~~~kP~vI~v~g 71 (150)
T PF14639_consen 51 DMERLKKFIEKHKPDVIAVGG 71 (150)
T ss_dssp HHHHHHHHHHHH--SEEEE--
T ss_pred HHHHHHHHHHHcCCeEEEEcC
Confidence 345566777789999999988
No 176
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=24.20 E-value=1.6e+02 Score=24.21 Aligned_cols=22 Identities=5% Similarity=0.116 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCCCEEEEcCCC
Q 013207 40 FEEICSIAEQKEVDFVLLGGDL 61 (447)
Q Consensus 40 feeil~~a~~~~vD~VliaGDL 61 (447)
..+++...++.++-+|+++.|.
T Consensus 21 ~~~v~kai~~gkaklViiA~D~ 42 (99)
T PRK01018 21 SKRTIKAIKLGKAKLVIVASNC 42 (99)
T ss_pred HHHHHHHHHcCCceEEEEeCCC
Confidence 3567777788899999999994
No 177
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=24.12 E-value=1.3e+02 Score=26.18 Aligned_cols=39 Identities=13% Similarity=0.297 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 013207 37 FEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILR 80 (447)
Q Consensus 37 ~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~ 80 (447)
...++++.+.++++++|.|+++=+.-+ .+.+.+.++.++
T Consensus 127 lg~~~~l~~~~~~~~id~v~ial~~~~-----~~~i~~ii~~~~ 165 (175)
T PF13727_consen 127 LGDLDDLPELVREHDIDEVIIALPWSE-----EEQIKRIIEELE 165 (175)
T ss_dssp E--GGGHHHHHHHHT--EEEE--TTS------HHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHhCCCCEEEEEcCccC-----HHHHHHHHHHHH
Confidence 345788999999999999999955432 344544554444
No 178
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=23.91 E-value=2.7e+02 Score=29.41 Aligned_cols=52 Identities=23% Similarity=0.363 Sum_probs=38.6
Q ss_pred CCCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHH
Q 013207 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRS 70 (447)
Q Consensus 9 ~~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~ 70 (447)
+...+.-+.|.|..++. ..-.+.+++++.+++.++| |+++|=-|+-.+-...
T Consensus 43 ~~eVvaTiiCGDnYf~e---------n~eea~~~i~~mv~k~~pD-v~iaGPaFNagrYG~a 94 (431)
T TIGR01918 43 DAEVVHTVVCGDSFFGE---------NLEEAVARVLEMLKDKEPD-IFIAGPAFNAGRYGVA 94 (431)
T ss_pred CCEEEEEEEECchhhhh---------CHHHHHHHHHHHHHhcCCC-EEEEcCccCCccHHHH
Confidence 44556667788887763 2346679999999999999 5789999998754443
No 179
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=23.64 E-value=2e+02 Score=29.28 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCC
Q 013207 38 EAFEEICSIAEQKEVDFVLLGGDLFH 63 (447)
Q Consensus 38 ~~feeil~~a~~~~vD~VliaGDLfd 63 (447)
..+.++-+...+++||+||+-||-+.
T Consensus 54 ~~~~~~~~~~~~~~Pd~Vlv~GD~~~ 79 (346)
T PF02350_consen 54 LAIIELADVLEREKPDAVLVLGDRNE 79 (346)
T ss_dssp HHHHHHHHHHHHHT-SEEEEETTSHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCch
Confidence 35666777778899999999999654
No 180
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=23.31 E-value=2.3e+02 Score=30.25 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=34.3
Q ss_pred EEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHH--cCCCEEEEcC-----CCCCCCCCCHHHHHHHHHHHHHh
Q 013207 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ--KEVDFVLLGG-----DLFHENKPSRSTLVKAIEILRRH 82 (447)
Q Consensus 14 rILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~--~~vD~VliaG-----DLfd~~~ps~~~l~~~~~~L~~l 82 (447)
||+.++|.|-.+-. +.+++-+.+.+ .+||.++++| |-|-......+.+.++.+.|+.+
T Consensus 182 RfI~s~D~~N~~l~-----------i~e~f~~~l~e~~~~~D~avlSG~q~l~d~y~dg~~~~e~l~~~~~~i~~l 246 (453)
T PRK14039 182 RFIATFDHLNFRLF-----------INPAFEQYALEHAGEMDGALISGFHLLLETYPDGSTYREKLEDSLAQLKWW 246 (453)
T ss_pred eEEEecCCCCccce-----------ecHHHHHHHHhhccCCCEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHH
Confidence 88999998866432 12333333333 3899999999 33332222344566666666664
No 181
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=23.16 E-value=45 Score=27.81 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=22.4
Q ss_pred CCcEEEECCCC---CCCCCCCcchhhhhhhcCCc
Q 013207 118 GLPVFSIHGNH---DDPAGVDNLSAVDILSACNL 148 (447)
Q Consensus 118 ~ipV~~I~GNH---D~~~~~~~~~~~d~L~~~g~ 148 (447)
=+|+|++.|+| |-|... .-|+...|...|+
T Consensus 61 lvPl~L~~G~H~~~Dipge~-~~SW~~~l~~~g~ 93 (103)
T cd03413 61 LMPLMLVAGDHAHNDMAGDE-PDSWKSILEAAGI 93 (103)
T ss_pred EEehhheecccchhcCCCCC-chhHHHHHHHCCC
Confidence 37999999999 666543 2378888887775
No 182
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=22.91 E-value=1.5e+02 Score=26.69 Aligned_cols=46 Identities=22% Similarity=0.323 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHH-cCCCEEEE--cCCCCCCCCCCHHHHHHHHHHHHHhh
Q 013207 38 EAFEEICSIAEQ-KEVDFVLL--GGDLFHENKPSRSTLVKAIEILRRHC 83 (447)
Q Consensus 38 ~~feeil~~a~~-~~vD~Vli--aGDLfd~~~ps~~~l~~~~~~L~~l~ 83 (447)
..++++.+.+.+ .++++|++ ..++.+...-+...+.+++..|+++|
T Consensus 127 ~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la 175 (193)
T PF13481_consen 127 EDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLA 175 (193)
T ss_dssp HHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 346788888888 78999887 45666653334444567888888875
No 183
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=21.31 E-value=1.5e+02 Score=23.77 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCC
Q 013207 40 FEEICSIAEQKEVDFVLLGGDLFHE 64 (447)
Q Consensus 40 feeil~~a~~~~vD~VliaGDLfd~ 64 (447)
+.++.+.....++-+|+++.|.-..
T Consensus 20 ~~~v~k~l~~~~~~lvilA~d~~~~ 44 (95)
T PF01248_consen 20 IKEVLKALKKGKAKLVILAEDCSPD 44 (95)
T ss_dssp HHHHHHHHHTTCESEEEEETTSSSG
T ss_pred hHHHHHHHHcCCCcEEEEcCCCChh
Confidence 5778888888899999999998663
No 184
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=21.13 E-value=4.3e+02 Score=23.10 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=29.3
Q ss_pred EEEEcCCCCCCCCC------c------ccccccHHHHHHHHHHHHHHcCCCEEEEcC---CCCCC
Q 013207 15 ILVATDCHLGYMEK------D------EIRRHDSFEAFEEICSIAEQKEVDFVLLGG---DLFHE 64 (447)
Q Consensus 15 ILh~SD~HLG~~~~------~------~~r~~d~~~~feeil~~a~~~~vD~VliaG---DLfd~ 64 (447)
|+++.|.|..+... + ...++-+...+..+.+.+...++|.|++.+ |+...
T Consensus 2 i~~~g~s~~~~w~~~~~~~~~~~v~N~Gi~G~~~~~~~~~~~~~~~~~~p~~vvi~~G~ND~~~~ 66 (171)
T cd04502 2 ILFYGSSSIRLWDTLADDLAPLPVVNRGFGGSTLADCLHYFDRLVLPYQPRRVVLYAGDNDLASG 66 (171)
T ss_pred EEEEcCchhcchhhHHHhCCCCceeecCcccchHHHHHHHHHhhhccCCCCEEEEEEecCcccCC
Confidence 67777777765431 0 123333334444455555567999998855 87643
No 185
>PF05902 4_1_CTD: 4.1 protein C-terminal domain (CTD); InterPro: IPR008379 There is a unique sequence domain at the C terminus of all known 4.1 proteins, known as the C-terminal domain (CTD). Mammalian CTDs are associated with a growing number of protein-protein interactions, although such activities have yet to be associated with invertebrate CTDs. Mammalian CTDs are generally defined by sequence alignment as encoded by exons 18-21. Comparison of known vertebrate 4.1 proteins with invertebrate 4.1 proteins indicates that mammalian 4.1 exon 19 represents a vertebrate adaptation that extends the sequence of the CTD with a Ser/Thr-rich sequence. The CTD was first described as a 22/24 kDa domain by chymotryptic digestion of erythrocyte 4.1 (4.1R). CTD is thought to represent an independent folding structure which has gained function since the divergence of vertebrates from invertebrates [].; GO: 0003779 actin binding, 0005198 structural molecule activity, 0005856 cytoskeleton
Probab=21.02 E-value=1.8e+02 Score=24.94 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEE
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVL 56 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~Vl 56 (447)
-||++++|--+ |.-++|.+.+..|++.+||+-+
T Consensus 71 KRIvITGD~DI-----------DhDqaLa~aI~eAk~q~Pdm~V 103 (114)
T PF05902_consen 71 KRIVITGDADI-----------DHDQALAQAIKEAKEQHPDMSV 103 (114)
T ss_pred EEEEEecCCCc-----------chHHHHHHHHHHHHHhCCCceE
Confidence 36777777654 3456899999999999999854
No 186
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=20.86 E-value=3.6e+02 Score=26.05 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=42.3
Q ss_pred ceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCCCCCHHHHHHHHHHHHHhh
Q 013207 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRSTLVKAIEILRRHC 83 (447)
Q Consensus 12 ~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~Vli-aGDLfd~~~ps~~~l~~~~~~L~~l~ 83 (447)
.+.+...+-.-++....++..+.+.+..+..+++.|.+.+++.|++ .|-. ...+.......+.+.|++++
T Consensus 59 ~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~--~~~~~~~~~~~~~~~l~~l~ 129 (279)
T cd00019 59 SICLSVHAPYLINLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSY--LGQSKEEGLKRVIEALNELI 129 (279)
T ss_pred CCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC--CCCCHHHHHHHHHHHHHHHH
Confidence 4455443332222222334456777889999999999999998766 4521 11233445566667777764
No 187
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=20.49 E-value=1.1e+02 Score=30.37 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=28.2
Q ss_pred EEEEEcCCCCCCCCCcc---cccccHHHHHHHHHHHHHHcC---CCEEEEcCCCCCC
Q 013207 14 RILVATDCHLGYMEKDE---IRRHDSFEAFEEICSIAEQKE---VDFVLLGGDLFHE 64 (447)
Q Consensus 14 rILh~SD~HLG~~~~~~---~r~~d~~~~feeil~~a~~~~---vD~VliaGDLfd~ 64 (447)
+-+|+--+||....... ........-+++|.+.+.+.+ -+-||++||+=..
T Consensus 133 ~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~~~~~~pvIl~GDfN~~ 189 (283)
T TIGR03395 133 KKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSKNIPKDETVLIGGDLNVN 189 (283)
T ss_pred eEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhccCCCCceEEEEeeCCCC
Confidence 34778888998653210 001122233455665554433 3459999997554
No 188
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=20.48 E-value=1.4e+02 Score=28.53 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=14.8
Q ss_pred HHHHcCCCEEEEcCCCCCCCCC
Q 013207 46 IAEQKEVDFVLLGGDLFHENKP 67 (447)
Q Consensus 46 ~a~~~~vD~VliaGDLfd~~~p 67 (447)
.|.+.++|+|.++- +|-..++
T Consensus 126 ~A~~~gaDYv~~Gp-v~t~tK~ 146 (221)
T PRK06512 126 EIGELRPDYLFFGK-LGADNKP 146 (221)
T ss_pred HhhhcCCCEEEECC-CCCCCCC
Confidence 36678999998877 7744333
No 189
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=20.38 E-value=3.2e+02 Score=27.43 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCC
Q 013207 37 FEAFEEICSIAEQKEVDFVLLGGDLF 62 (447)
Q Consensus 37 ~~~feeil~~a~~~~vD~VliaGDLf 62 (447)
...+.++.+..+++++|+|+.-||-+
T Consensus 72 ~~~~~~l~~~l~~~~pDiv~~~gd~~ 97 (365)
T TIGR00236 72 SNMLEGLEELLLEEKPDIVLVQGDTT 97 (365)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCch
Confidence 34567777788899999999999864
Done!