Query 013207
Match_columns 447
No_of_seqs 365 out of 2213
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 06:12:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fbk_A DNA repair and telomere 100.0 9.6E-81 3.3E-85 644.8 39.6 390 6-404 70-472 (472)
2 4fbw_A DNA repair protein RAD3 100.0 4.1E-81 1.4E-85 643.2 35.5 393 6-407 7-412 (417)
3 3t1i_A Double-strand break rep 100.0 7.2E-81 2.5E-85 643.8 37.4 395 6-409 26-427 (431)
4 1ii7_A MRE11 nuclease; RAD50, 100.0 3.2E-35 1.1E-39 295.1 27.2 253 13-321 1-279 (333)
5 3av0_A DNA double-strand break 100.0 1.6E-33 5.6E-38 288.4 28.1 252 9-324 17-276 (386)
6 2q8u_A Exonuclease, putative; 100.0 2.4E-33 8.3E-38 281.5 23.7 258 10-321 16-290 (336)
7 3tho_B Exonuclease, putative; 100.0 1.4E-33 4.8E-38 288.4 21.3 252 13-322 1-273 (379)
8 3d03_A Phosphohydrolase; glyce 99.8 5.4E-21 1.8E-25 184.1 12.6 243 13-317 1-265 (274)
9 3ib7_A ICC protein; metallopho 99.8 1.3E-20 4.5E-25 186.4 14.6 242 8-312 21-281 (330)
10 1uf3_A Hypothetical protein TT 99.8 2.3E-19 7.8E-24 167.8 14.5 203 11-309 4-227 (228)
11 2yvt_A Hypothetical protein AQ 99.8 1E-18 3.5E-23 167.3 13.7 211 11-306 4-258 (260)
12 1z2w_A Vacuolar protein sortin 99.7 5.3E-17 1.8E-21 149.8 15.3 185 5-322 3-189 (192)
13 2a22_A Vacuolar protein sortin 99.7 1.5E-16 5.1E-21 149.7 17.4 99 218-322 113-213 (215)
14 2xmo_A LMO2642 protein; phosph 99.7 1.6E-16 5.6E-21 164.4 18.2 248 9-310 36-333 (443)
15 2kkn_A Uncharacterized protein 99.7 3.5E-16 1.2E-20 143.1 11.0 52 244-309 127-178 (178)
16 2nxf_A Putative dimetal phosph 99.7 8.5E-16 2.9E-20 150.3 14.2 87 10-131 3-100 (322)
17 1s3l_A Hypothetical protein MJ 99.6 8.7E-16 3E-20 141.9 12.5 162 11-303 24-186 (190)
18 1ute_A Protein (II purple acid 99.6 7.4E-15 2.5E-19 143.2 16.2 256 10-320 4-300 (313)
19 1su1_A Hypothetical protein YF 99.6 1.7E-13 5.8E-18 128.1 18.7 180 9-320 22-205 (208)
20 3ck2_A Conserved uncharacteriz 99.5 3.7E-14 1.3E-18 128.8 10.4 89 219-316 78-168 (176)
21 3qfm_A SAPH, putative uncharac 99.5 2.8E-13 9.6E-18 131.8 16.1 208 9-309 8-229 (270)
22 1nnw_A Hypothetical protein; s 99.5 1.2E-13 4.2E-18 131.7 10.2 71 12-131 1-76 (252)
23 3rl5_A Metallophosphoesterase 99.4 1E-12 3.6E-17 129.1 12.1 183 9-278 56-276 (296)
24 3rqz_A Metallophosphoesterase; 99.4 3E-13 1E-17 129.3 7.3 54 11-82 2-55 (246)
25 3tgh_A Glideosome-associated p 99.4 3.4E-12 1.1E-16 128.3 15.0 265 11-324 2-308 (342)
26 1xm7_A Hypothetical protein AQ 99.3 3.9E-12 1.3E-16 117.2 8.5 81 12-131 1-84 (195)
27 1xzw_A Purple acid phosphatase 99.1 1.3E-09 4.4E-14 112.2 18.5 77 10-132 124-205 (426)
28 2qfp_A Purple acid phosphatase 99.1 1.3E-09 4.4E-14 112.1 17.2 77 10-132 117-198 (424)
29 2wdc_A SOXB, sulfur oxidation 98.9 1E-08 3.4E-13 109.5 14.1 186 38-276 105-307 (562)
30 3ive_A Nucleotidase; structura 98.9 1.5E-08 5.3E-13 106.8 15.3 55 10-64 4-65 (509)
31 1hp1_A 5'-nucleotidase; metall 98.9 1.9E-08 6.5E-13 106.2 15.2 56 8-65 4-64 (516)
32 2z1a_A 5'-nucleotidase; metal- 98.8 5.1E-08 1.7E-12 103.9 16.4 203 9-259 26-244 (552)
33 3qfk_A Uncharacterized protein 98.7 7.8E-08 2.7E-12 101.8 13.6 216 10-276 17-266 (527)
34 4h2g_A 5'-nucleotidase; dimer, 98.7 1.3E-07 4.6E-12 100.5 13.8 57 9-65 22-87 (546)
35 3ztv_A NAD nucleotidase, NADN; 98.6 2.9E-07 1E-11 98.5 12.9 56 10-65 10-75 (579)
36 3jyf_A 2',3'-cyclic nucleotide 98.4 6.8E-06 2.3E-10 82.2 17.8 55 11-65 7-66 (339)
37 3gve_A YFKN protein; alpha-bet 98.4 4.2E-06 1.4E-10 83.8 14.8 56 10-65 9-69 (341)
38 2qjc_A Diadenosine tetraphosph 98.3 4.4E-07 1.5E-11 87.5 4.9 44 13-68 19-63 (262)
39 1g5b_A Serine/threonine protei 98.3 3.4E-07 1.2E-11 85.5 3.7 47 10-68 10-57 (221)
40 2dfj_A Diadenosinetetraphospha 98.1 1.9E-06 6.6E-11 83.9 4.7 68 13-131 1-69 (280)
41 1t71_A Phosphatase, conserved 98.1 3.7E-05 1.3E-09 74.7 13.0 194 11-273 3-203 (281)
42 3c9f_A 5'-nucleotidase; 2',3'- 97.9 2.8E-05 9.6E-10 82.8 10.7 57 8-64 11-73 (557)
43 4h1s_A 5'-nucleotidase; hydrol 97.9 0.00016 5.6E-09 76.3 14.6 53 13-65 4-65 (530)
44 2z72_A Protein-tyrosine-phosph 97.8 2.6E-05 8.8E-10 78.0 6.4 49 11-71 69-125 (342)
45 2z06_A Putative uncharacterize 97.7 0.001 3.4E-08 63.6 16.4 180 13-273 1-190 (252)
46 1t70_A Phosphatase; crystal, X 97.7 0.00031 1E-08 67.3 12.8 183 13-273 1-193 (255)
47 2ie4_C PP2A-alpha;, serine/thr 97.6 8.2E-05 2.8E-09 73.3 7.6 74 12-132 49-122 (309)
48 1wao_1 Serine/threonine protei 97.5 0.00015 5.2E-09 75.3 8.3 74 11-131 211-285 (477)
49 1fjm_A Protein serine/threonin 97.5 0.00014 4.7E-09 72.4 7.5 72 13-131 57-128 (330)
50 3h63_A Serine/threonine-protei 97.5 0.00024 8.3E-09 70.0 8.4 51 10-72 57-108 (315)
51 3icf_A PPT, serine/threonine-p 97.4 0.00032 1.1E-08 69.7 8.9 51 10-72 61-112 (335)
52 3e7a_A PP-1A, serine/threonine 97.4 0.00025 8.5E-09 69.5 7.5 72 13-131 56-127 (299)
53 3e0j_A DNA polymerase subunit 97.3 0.00088 3E-08 69.4 10.6 53 10-65 198-258 (476)
54 3ll8_A Serine/threonine-protei 97.3 0.00043 1.5E-08 69.3 7.5 48 13-72 70-117 (357)
55 1aui_A Calcineurin, serine/thr 97.2 0.00046 1.6E-08 72.0 7.5 73 12-131 82-154 (521)
56 2yeq_A Apased, PHOD, alkaline 95.3 0.018 6E-07 60.7 6.0 42 11-65 115-156 (527)
57 3flo_A DNA polymerase alpha su 95.3 0.04 1.4E-06 56.8 8.3 51 10-67 145-196 (460)
58 3w01_A Heptaprenylglyceryl pho 63.2 15 0.00051 34.2 6.8 46 47-131 32-77 (235)
59 3tnj_A Universal stress protei 62.9 14 0.00049 30.3 6.2 19 40-58 98-116 (150)
60 3vzx_A Heptaprenylglyceryl pho 56.3 14 0.00048 34.2 5.3 48 45-131 25-72 (228)
61 4e7p_A Response regulator; DNA 55.9 14 0.00047 30.3 4.9 57 7-63 15-78 (150)
62 1mjh_A Protein (ATP-binding do 55.2 37 0.0013 28.1 7.7 12 117-128 150-161 (162)
63 3hv2_A Response regulator/HD d 52.8 27 0.00092 28.6 6.2 57 7-63 9-70 (153)
64 1g5b_A Serine/threonine protei 51.9 5.8 0.0002 35.8 1.9 31 244-278 177-207 (221)
65 3pzy_A MOG; ssgcid, seattle st 49.3 49 0.0017 28.6 7.5 24 38-61 53-76 (164)
66 2pjk_A 178AA long hypothetical 48.2 32 0.0011 30.2 6.2 28 34-61 63-91 (178)
67 2dum_A Hypothetical protein PH 48.0 42 0.0014 28.1 6.8 15 117-131 147-161 (170)
68 1jmv_A USPA, universal stress 45.8 35 0.0012 27.5 5.8 21 40-60 91-111 (141)
69 3fdx_A Putative filament prote 43.7 63 0.0021 25.9 7.1 21 39-59 94-114 (143)
70 2z08_A Universal stress protei 42.4 50 0.0017 26.5 6.2 19 40-58 88-106 (137)
71 3s3t_A Nucleotide-binding prot 39.7 48 0.0017 26.7 5.7 19 40-58 96-115 (146)
72 3hgm_A Universal stress protei 37.8 58 0.002 26.2 5.9 19 40-58 99-117 (147)
73 3j21_Z 50S ribosomal protein L 37.1 49 0.0017 25.9 5.1 21 40-60 20-40 (99)
74 2pbq_A Molybdenum cofactor bio 37.1 1.2E+02 0.004 26.4 8.1 27 35-61 51-78 (178)
75 2gm3_A Unknown protein; AT3G01 36.8 46 0.0016 28.0 5.3 15 117-131 154-168 (175)
76 3men_A Acetylpolyamine aminohy 36.4 76 0.0026 31.3 7.3 47 35-81 275-328 (362)
77 2xzm_U Ribosomal protein L7AE 36.4 80 0.0027 26.1 6.4 23 41-63 30-52 (126)
78 3cpq_A 50S ribosomal protein L 35.4 39 0.0013 27.2 4.3 22 40-61 26-47 (110)
79 3hdg_A Uncharacterized protein 35.0 1.1E+02 0.0038 23.9 7.2 54 10-63 5-63 (137)
80 3rfq_A Pterin-4-alpha-carbinol 34.5 66 0.0023 28.5 6.0 27 35-61 73-99 (185)
81 2lpm_A Two-component response 33.4 63 0.0022 26.4 5.3 47 10-57 6-59 (123)
82 1iv0_A Hypothetical protein; r 33.2 95 0.0033 24.4 6.2 24 35-58 35-58 (98)
83 1q77_A Hypothetical protein AQ 30.8 43 0.0015 26.8 3.9 18 41-58 99-116 (138)
84 1qv9_A F420-dependent methylen 30.1 2.9E+02 0.0098 25.7 9.4 66 37-149 50-115 (283)
85 3f6p_A Transcriptional regulat 30.0 94 0.0032 23.9 5.8 19 40-58 35-53 (120)
86 3q9b_A Acetylpolyamine amidohy 29.2 82 0.0028 30.8 6.2 47 35-81 257-310 (341)
87 3ngf_A AP endonuclease, family 28.8 75 0.0026 28.9 5.7 52 30-83 85-137 (269)
88 3dlo_A Universal stress protei 28.4 83 0.0028 26.1 5.4 9 117-125 147-155 (155)
89 3cz5_A Two-component response 28.0 1.8E+02 0.0062 23.2 7.5 52 11-63 4-63 (153)
90 4hwg_A UDP-N-acetylglucosamine 27.4 55 0.0019 32.2 4.6 27 37-63 80-106 (385)
91 3cg4_A Response regulator rece 27.3 2.1E+02 0.0073 22.2 7.7 52 10-63 5-63 (142)
92 3nhm_A Response regulator; pro 27.3 1.5E+02 0.0053 22.8 6.7 25 39-63 35-59 (133)
93 3cnb_A DNA-binding response re 26.7 1.8E+02 0.0062 22.6 7.1 53 10-63 6-66 (143)
94 2lbw_A H/ACA ribonucleoprotein 26.7 1E+02 0.0035 25.1 5.5 24 40-63 25-48 (121)
95 3eod_A Protein HNR; response r 25.8 1.5E+02 0.0051 22.8 6.3 52 10-63 5-63 (130)
96 2zay_A Response regulator rece 25.6 1.8E+02 0.0062 22.9 7.0 54 10-63 6-64 (147)
97 3vk5_A MOEO5; TIM barrel, tran 25.6 1.3E+02 0.0046 28.5 6.7 56 39-133 54-115 (286)
98 3mt0_A Uncharacterized protein 25.5 1.4E+02 0.0047 27.4 6.9 21 39-59 77-97 (290)
99 3eul_A Possible nitrate/nitrit 25.0 2E+02 0.0068 22.9 7.2 56 8-63 11-73 (152)
100 1nu0_A Hypothetical protein YQ 24.8 1.2E+02 0.004 25.5 5.6 20 39-58 41-60 (138)
101 2j48_A Two-component sensor ki 24.5 2.1E+02 0.0071 21.0 6.8 24 40-63 34-57 (119)
102 2rdm_A Response regulator rece 24.4 2.3E+02 0.008 21.5 7.3 23 40-62 38-61 (132)
103 1w41_A 50S ribosomal protein L 24.3 2.5E+02 0.0085 21.7 7.5 21 40-60 21-41 (101)
104 2qxy_A Response regulator; reg 24.2 1.9E+02 0.0064 22.6 6.8 49 11-59 3-56 (142)
105 3cqj_A L-ribulose-5-phosphate 24.1 2.5E+02 0.0084 25.6 8.4 53 30-83 100-153 (295)
106 4a69_A Histone deacetylase 3,; 23.9 1.8E+02 0.0062 28.7 7.6 47 35-81 231-285 (376)
107 3n53_A Response regulator rece 23.8 1.3E+02 0.0046 23.5 5.7 51 12-63 3-58 (140)
108 3hzh_A Chemotaxis response reg 23.5 2E+02 0.007 23.1 7.0 53 10-63 34-95 (157)
109 3jte_A Response regulator rece 23.4 2.4E+02 0.0082 22.0 7.3 50 12-63 3-61 (143)
110 3f6c_A Positive transcription 23.2 1.4E+02 0.0049 23.0 5.8 23 41-63 36-58 (134)
111 2yxb_A Coenzyme B12-dependent 22.6 1.6E+02 0.0054 25.1 6.2 39 39-81 57-95 (161)
112 1srr_A SPO0F, sporulation resp 22.5 2.5E+02 0.0086 21.2 7.1 23 40-62 36-58 (124)
113 1mvo_A PHOP response regulator 21.7 2.8E+02 0.0094 21.3 7.3 24 40-63 36-59 (136)
114 3max_A HD2, histone deacetylas 21.5 2.4E+02 0.0081 27.8 7.9 47 35-81 230-284 (367)
115 3olq_A Universal stress protei 21.2 1.7E+02 0.0058 27.0 6.7 13 117-129 141-153 (319)
116 2rjn_A Response regulator rece 20.9 1.8E+02 0.0062 23.2 6.1 52 10-63 5-63 (154)
117 3obe_A Sugar phosphate isomera 20.8 2.1E+02 0.0073 26.6 7.3 66 12-83 89-156 (305)
118 3crn_A Response regulator rece 20.6 2.9E+02 0.0099 21.2 7.2 23 40-62 36-58 (132)
119 1zz1_A Histone deacetylase-lik 20.4 1.9E+02 0.0064 28.5 6.9 49 35-83 240-296 (369)
120 3i42_A Response regulator rece 20.3 2.6E+02 0.0089 21.2 6.7 50 12-63 3-59 (127)
No 1
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=100.00 E-value=9.6e-81 Score=644.82 Aligned_cols=390 Identities=45% Similarity=0.820 Sum_probs=344.6
Q ss_pred CCCCCCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 013207 6 REDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLN 85 (447)
Q Consensus 6 ~~~~~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~ 85 (447)
..++.++|||+|+||||||+...+..++.+++.+|+++++.|.+++||+||++|||||...|+..++.++++.|+++|+|
T Consensus 70 ~~~~~~~mrilhiSDlHLG~~~~~~~~~~d~~~~l~~lv~~~~~~~~D~VliaGDLfd~~~ps~~a~~~~~~~Lr~~~~g 149 (472)
T 4fbk_A 70 SAGSENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLG 149 (472)
T ss_dssp ---CTTCEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHBS
T ss_pred CCCCCCCeEEEEEecccCCCcccCcccchhHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCHHHHHHHHHHHHHhccc
Confidence 34567889999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeechhhhcc-cccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcce
Q 013207 86 DRPVQFQVVSDQAVNF-QNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGE 164 (447)
Q Consensus 86 ~~~~~~~~lsd~~~~f-~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~ 164 (447)
|+||+||+|||+..+| .+.|.++||+|||++++||||+|+||||.+.+.+..+++++|..+|++++||+. ...++
T Consensus 150 ~~~~~~e~L~d~~~~~~~~~~~~vn~~dp~~~~gIpVf~I~GNHD~~~~~~~~s~~~LL~~~g~v~l~g~~----~~~d~ 225 (472)
T 4fbk_A 150 DKPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHDDPSGDGRYSALDILQVTGLVNYFGRV----PENDN 225 (472)
T ss_dssp SCCCCCEEEEEC-----CCCSCSSSTTCTTBCBSSCEEECCCCCCSCCC--CCCHHHHHHHTTSCEECCCC----SCSSS
T ss_pred CCcchheecchhhhhcccccccccccccccccCCCcEEEEecCCCCccccccccHHHHhccCCcEEEeCCc----ccCCc
Confidence 9999999999999998 578999999999999999999999999999987656799999999999999986 44567
Q ss_pred eEEEEEEEecCCeeEEEEecCCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCCCccccccccc
Q 013207 165 ITVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPR 244 (447)
Q Consensus 165 i~~~Pi~l~~g~~~vaiyGl~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~i~~~~~~~ 244 (447)
+.+.|+++++|+++++|||+||.+++++.+++.+ +.+.+.+|... ..+|++|+++|+++.+.++.+++++++++.
T Consensus 226 i~~~pv~l~kg~~~valyGl~y~~d~rl~r~~~e-~~v~~~~p~~~----~~~~~nIlvlH~~~~~~~~~~yipe~ll~~ 300 (472)
T 4fbk_A 226 IVVSPILLQKGFTKLALYGISNVRDERLYHSFRE-NKVKFLRPDLY----RDEWFNLLTVHQNHSAHTPTSYLPESFIQD 300 (472)
T ss_dssp EEECCEEEEETTEEEEEEECCCCCHHHHHHHHHT-TCEEEEEESTT----GGGEEEEEEEESCSCCSSTTSSCCGGGSCT
T ss_pred eeEEEEEEEeCCceEEEEecCCCchhhhhhhhhh-hhhhhhCcccc----cCCceEEEEecCCccCCCccccCChhhhhc
Confidence 8899999999999999999999999999888776 56677766422 237999999999998887778999999999
Q ss_pred CCcEEEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEEEEeCCeeEEEEEECCCCCcEEEEEEEecc
Q 013207 245 FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIILKD 324 (447)
Q Consensus 245 ~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~~~~~~~~~i~L~~~Rpf~~~~i~l~~ 324 (447)
++|||+|||+|.+++.++..+.++.+++||||++++|++++|.++|+|++|+|+++.+++++|||+++|||++++++|++
T Consensus 301 g~DyValGH~H~~~~~~~~~~~~g~~ivyPGS~~~~s~~e~E~~~kg~~lveI~~~~v~ve~I~L~t~Rpf~~~~i~L~~ 380 (472)
T 4fbk_A 301 FYDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRTVRPFIMKDIILSE 380 (472)
T ss_dssp TCSEEEEESCCSCEEEEEEETTTTEEEEECCCSSCSSCCGGGCSCCEEEEEEEETTEEEEEEEECSSSCCEEEEEEEGGG
T ss_pred CCCEEEecCcccceeeecccCCCCeEEEECCCccccccCccCCCCCEEEEEEEECCEEEEEEEECCCcccEEEEEEEEec
Confidence 99999999999998764333345679999999999999988888999999999999999999999999999999999999
Q ss_pred cCCCCCC--CHhHHHHHHHHHHHHHHHHhhhcccc---------CCCccCceeEEEEeecC-CcccCccchhhhhhhccC
Q 013207 325 EADIDPD--DQNSILEHLDKVVRNLIERSSKKTVN---------RSELKLPLVRIKVDYSG-FMTINPQRFGQKYVGKVA 392 (447)
Q Consensus 325 ~~~~~~~--~~~~~~~~l~~~v~~~i~~~~~~~~~---------~~~~~~pl~rlrv~~~~-~~~~~~~~~~~~~~~~va 392 (447)
..++++. +.+++.++|.+.|++||++++.++.. ...+++|||||||+|+| |+++||+||||+|+||||
T Consensus 381 ~~~~~~~~~~~~~v~~~l~~~v~~~i~~a~~~~~~~~~~~~~~~~~~~~~plirl~v~~~~~~~~~n~~rf~~~f~~~va 460 (472)
T 4fbk_A 381 VSSIPPMVENKKEVLTYLISKVEEAITEANAQWYEAQGTVPVVENEKPPLPLIRLRVDYTGGYQTENPQRFSNRFVGRVA 460 (472)
T ss_dssp CSSCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCTTSCCCCCCEEEEEEECTTTCCCCCHHHHHGGGTTTCS
T ss_pred ccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCCcEEEEEEEecCCCcccCHhHHhhhhCCccc
Confidence 8666653 67899999999999999998875421 23788999999999985 999999999999999999
Q ss_pred CCcceEEEeeec
Q 013207 393 NPQDILIFSKSS 404 (447)
Q Consensus 393 np~d~~~f~~~~ 404 (447)
||+||++|+|||
T Consensus 461 np~d~~~f~~~~ 472 (472)
T 4fbk_A 461 NATDVVQFYLKK 472 (472)
T ss_dssp CSSCSEEEECCC
T ss_pred ChhheeEEEeCc
Confidence 999999999986
No 2
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=100.00 E-value=4.1e-81 Score=643.17 Aligned_cols=393 Identities=45% Similarity=0.815 Sum_probs=333.5
Q ss_pred CCCCCCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 013207 6 REDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLN 85 (447)
Q Consensus 6 ~~~~~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~ 85 (447)
..++.++|||+|+||+|||+...+..++.+++.+|+++++.|.+++||+||++|||||...|+.+++.++++.|+++|+|
T Consensus 7 ~~~~~~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~lv~~~~~~~~D~VliaGDLfd~~~p~~~~~~~~~~~lr~~~~g 86 (417)
T 4fbw_A 7 ELHNENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLG 86 (417)
T ss_dssp ---CTTCEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCCBSSSSCCHHHHHHHHHHHHHHHBS
T ss_pred CCCCCCCeEEEEEEcCCCCCcccccccchhHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCHHHHHHHHHHHHHhccc
Confidence 34567889999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeechhhhcc-cccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcce
Q 013207 86 DRPVQFQVVSDQAVNF-QNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGE 164 (447)
Q Consensus 86 ~~~~~~~~lsd~~~~f-~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~ 164 (447)
|+||+||+|||++.+| .+.|.++||+|||+++++|||+|+||||.+.+.+..+++++|+.+|++++||+. ...++
T Consensus 87 ~~~~~~e~L~d~~~~~~~~~~~~~n~~d~~~~~gIpV~~I~GNHD~~~~~~~~s~~~lL~~~g~v~l~g~~----~~~~~ 162 (417)
T 4fbw_A 87 DKPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHDDPSGDGRYSALDILQVTGLVNYFGRV----PENDN 162 (417)
T ss_dssp SCCCCCEECC------------CCGGGCTTBCBSSCEEECCCGGGC-----CCCHHHHHHHTTSCEECCCC----C---C
T ss_pred CCcccceeccchhhhcccccccccccccccccCCCeEEEEecCCCCccccccccHHHHhccCCeEEEeCCc----ccCCc
Confidence 9999999999999998 578999999999999999999999999999887656789999999999999986 34567
Q ss_pred eEEEEEEEecCCeeEEEEecCCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCCCccccccccc
Q 013207 165 ITVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPR 244 (447)
Q Consensus 165 i~~~Pi~l~~g~~~vaiyGl~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~i~~~~~~~ 244 (447)
+.+.|+++++|+++++|||+||.+++++.+++.+ +.+.+.+|... ..+|++|+|+|+++.+.++.+++++.+++.
T Consensus 163 i~~~pv~l~~g~~~valyG~~~~~d~rl~r~~~~-~~v~~~~p~~~----~~~~~nIlvlH~~~~~~~~~~yip~~l~~~ 237 (417)
T 4fbw_A 163 IVVSPILLQKGFTKLALYGISNVRDERLYHSFRE-NKVKFLRPDLY----RDEWFNLLTVHQNHSAHTPTSYLPESFIQD 237 (417)
T ss_dssp EEECCEEEEETTEEEEEEEECCCCHHHHHHHHHT-TCEEEEEESTT----TTTSEEEEEEESCSSCSSSSSSCCGGGSCT
T ss_pred eeEEeEEEEecCceEEEEeccCCchhhhhhhhhh-hhhhhcCcccc----cCCceEEEEecCCccCCCCcccCchhHhhc
Confidence 8899999999999999999999999999888776 56777766421 247999999999998887788999999999
Q ss_pred CCcEEEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEEEEeCCeeEEEEEECCCCCcEEEEEEEecc
Q 013207 245 FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIILKD 324 (447)
Q Consensus 245 ~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~~~~~~~~~i~L~~~Rpf~~~~i~l~~ 324 (447)
++|||+|||+|.+++.++....++.+++||||++++|++++|.++|+|++|+++++.+++++||++++|||++.+++|++
T Consensus 238 ~~DyvalGH~H~~~~~~~~~~~~g~~i~~PGS~~~~s~~e~E~~~kg~~lvei~~~~~~~e~i~l~~~Rpf~~~~v~L~~ 317 (417)
T 4fbw_A 238 FYDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRTVRPFIMKDIILSE 317 (417)
T ss_dssp TCSEEEEESCCSCEEEEEEETTTTEEEEECCCSSCSSCCHHHHSCCEEEEEEEETTEEEEEEEECSSSCCEEEEEEEGGG
T ss_pred CCCEEEecCccccceeccccCCCCEEEEECCCCCcCCCccccCCCCEEEEEEEECCEEEEEEEECCCcccEEEEEEEeec
Confidence 99999999999998764333445679999999999999987778999999999999999999999999999999999999
Q ss_pred cCCCCC--CCHhHHHHHHHHHHHHHHHHhhhcccc---------CCCccCceeEEEEeec-CCcccCccchhhhhhhccC
Q 013207 325 EADIDP--DDQNSILEHLDKVVRNLIERSSKKTVN---------RSELKLPLVRIKVDYS-GFMTINPQRFGQKYVGKVA 392 (447)
Q Consensus 325 ~~~~~~--~~~~~~~~~l~~~v~~~i~~~~~~~~~---------~~~~~~pl~rlrv~~~-~~~~~~~~~~~~~~~~~va 392 (447)
..++++ ++.+++.++|.+.|++||++++.++.. ..++++|||||||+|+ +|+++||+||||+|+||||
T Consensus 318 ~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~plirl~v~~~~~~~~~n~~~f~~~~~~~va 397 (417)
T 4fbw_A 318 VSSIPPMVENKKEVLTYLISKVEEAITEANAQWYEAQGTVPVVENEKPPLPLIRLRVDYTGGYQTENPQRFSNRFVGRVA 397 (417)
T ss_dssp CTTSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCTTSCCCCCCEEEEEEECTTTCCCCCHHHHHHTTTTTCS
T ss_pred ccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCCceeEEEEEecCCccccCHHHHHHhhccccc
Confidence 866655 367899999999999999998875421 2378899999999998 5999999999999999999
Q ss_pred CCcceEEEeeecccc
Q 013207 393 NPQDILIFSKSSKKS 407 (447)
Q Consensus 393 np~d~~~f~~~~~~~ 407 (447)
||+||++|+|||+..
T Consensus 398 n~~d~~~~~~~~~~~ 412 (417)
T 4fbw_A 398 NATDVVQFYLKKVDE 412 (417)
T ss_dssp CTTCSEEEECC----
T ss_pred ChHHeeeeeeccCCc
Confidence 999999999998753
No 3
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=100.00 E-value=7.2e-81 Score=643.77 Aligned_cols=395 Identities=50% Similarity=0.854 Sum_probs=333.0
Q ss_pred CCCCCCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 013207 6 REDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLN 85 (447)
Q Consensus 6 ~~~~~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~ 85 (447)
..+..++|||+|+||||||+...+..++.+++.+|+++++.+.+++||+||++|||||...|+..++.++++.|+++|+|
T Consensus 26 ~~~~~~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~ll~~~~~~~~D~VliaGDlfd~~~~~~~~~~~~~~~L~r~~~~ 105 (431)
T 3t1i_A 26 ALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGDLFHENKPSRKTLHTCLELLRKYCMG 105 (431)
T ss_dssp -CCGGGEEEEEEECCCCBTTTSSCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCCBSSSSCCHHHHHHHHHHHHHHHBC
T ss_pred CCCCCCCEEEEEEeccCCCCcccccchhhhHHHHHHHHHHHHhhcCCCEEEEcCccccCCCCCHHHHHHHHHHHHHHhcc
Confidence 35667889999999999999988888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeechhhhccc-ccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcce
Q 013207 86 DRPVQFQVVSDQAVNFQ-NKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGE 164 (447)
Q Consensus 86 ~~~~~~~~lsd~~~~f~-~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~ 164 (447)
|+||+|++|||++.+|. +.|..+||+|||+++++|||+|+||||++.+.+.++++++|+.+|++++||+. ..+++
T Consensus 106 ~~~~~~~~lsd~~~~~~~~~~~~~ny~d~n~~~~ipV~~I~GNHD~~~g~~~l~~~~lL~~~glv~~fg~~----~~~e~ 181 (431)
T 3t1i_A 106 DRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRS----MSVEK 181 (431)
T ss_dssp SSCCCCEECSCC------------------CCBCSCEEECCCSSSCCBTTTTBCHHHHHHHHTSEEECCCC----CCSSC
T ss_pred CCcccceeccchhhccccccccccccccccccCCCcEEEEccCCCCcccccccCHHHHhccCCcEEEECCc----Ccccc
Confidence 99999999999999997 47899999999999999999999999999987777899999999999999985 44567
Q ss_pred eEEEEEEEecCCeeEEEEecCCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCCCccccccccc
Q 013207 165 ITVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPR 244 (447)
Q Consensus 165 i~~~Pi~l~~g~~~vaiyGl~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~i~~~~~~~ 244 (447)
+.+.|+++++|++++++||+||.+++++.+++.+ +++++++|... .++|++|+++|+++...+...++++.+++.
T Consensus 182 i~~~Pv~l~~g~~~valyGl~~~~~~~l~~~~~~-~~v~~~~p~~~----~~~~~~Ilv~H~~~~~~g~~~~ip~~l~~~ 256 (431)
T 3t1i_A 182 IDISPVLLQKGSTKIALYGLGSIPDERLYRMFVN-KKVTMLRPKED----ENSWFNLFVIHQNRSKHGSTNFIPEQFLDD 256 (431)
T ss_dssp EEECCEEEEETTEEEEEEEECCCCHHHHHHHHHT-TCEEECCCSSC----GGGEEEEEEECSCCSCSSSSSSCCGGGSCT
T ss_pred eeeEEEEEecCCEeEEEEeCCCCCHHHHhhhhcc-ccceeeccccc----CCCceEEEEECCCccCCCccccCCHhHhhC
Confidence 8889999999999999999999999999888765 55666666421 247999999999987767778999999999
Q ss_pred CCcEEEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEEEEeCCeeEEEEEECCCCCcEEEEEEEecc
Q 013207 245 FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIILKD 324 (447)
Q Consensus 245 ~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~~~~~~~~~i~L~~~Rpf~~~~i~l~~ 324 (447)
++|||+|||+|.+++.++..+.++.+++||||++++||+|+|.++|+|++|+|+++.+++++|||+++|||++.+++|++
T Consensus 257 ~~Dyv~lGH~H~~~~~~~~~~~~~~~i~yPGS~~~~s~~e~E~~~k~~~lvei~~~~~~ve~i~l~~~R~f~~~~v~l~~ 336 (431)
T 3t1i_A 257 FIDLVIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIPLHTVRQFFMEDIVLAN 336 (431)
T ss_dssp TCCEEEECSCCSCEEEEEECTTTCCEEEECCCSSCCSCCHHHHSCCEEEEEEEETTEEEEEEEECSSSCCEEEEEEEGGG
T ss_pred CCCEEEecccccccccccccCCCCEEEEeCCCCcccCcCcccCCCCEEEEEEEECCEEEEEEEECCCcceEEEEEEEEec
Confidence 99999999999998754333334689999999999999987789999999999999999999999999999999999999
Q ss_pred cCCC----CCCCHhHHHHHHHHHHHHHHHHhhhccccCC-CccCceeEEEEeecC-CcccCccchhhhhhhccCCCcceE
Q 013207 325 EADI----DPDDQNSILEHLDKVVRNLIERSSKKTVNRS-ELKLPLVRIKVDYSG-FMTINPQRFGQKYVGKVANPQDIL 398 (447)
Q Consensus 325 ~~~~----~~~~~~~~~~~l~~~v~~~i~~~~~~~~~~~-~~~~pl~rlrv~~~~-~~~~~~~~~~~~~~~~vanp~d~~ 398 (447)
..++ ++++.+++.++|.+.|++||++++.+..+.+ +|++||+||||+|+| ++++||+||||+|+|+||||+||+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~plirl~v~~~~~~~~~n~~rf~~~~~~~van~~d~~ 416 (431)
T 3t1i_A 337 HPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEKPLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDII 416 (431)
T ss_dssp CTTTCCSSCTTHHHHHHHHHHHHHHHHHHHHHHHTTTCSSSCSSCEEEEEEECTTTCCCCCSHHHHHHHTTTCSCSSSSE
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEEEecCCCCccCHHHHHHhhCCcccChHHeE
Confidence 8542 3456788999999999999999987765544 889999999999996 999999999999999999999999
Q ss_pred EEeeecccccc
Q 013207 399 IFSKSSKKSKA 409 (447)
Q Consensus 399 ~f~~~~~~~~~ 409 (447)
+|+|||+++.+
T Consensus 417 ~~~~~~~~~~~ 427 (431)
T 3t1i_A 417 HFFRHREQKEK 427 (431)
T ss_dssp EEEC-------
T ss_pred EEEEecchhhh
Confidence 99998887643
No 4
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=100.00 E-value=3.2e-35 Score=295.13 Aligned_cols=253 Identities=27% Similarity=0.355 Sum_probs=180.9
Q ss_pred eEEEEEcCCCCCCCC-CcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcce
Q 013207 13 VRILVATDCHLGYME-KDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (447)
Q Consensus 13 mrILh~SD~HLG~~~-~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~ 91 (447)
|||+|+||||+|... ..+.+.+++..+|+++++.+++++||+||++||+||...|+..++..+.+.|+++.
T Consensus 1 mkilh~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~-------- 72 (333)
T 1ii7_A 1 MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPK-------- 72 (333)
T ss_dssp CEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHHTTCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHH--------
T ss_pred CEEEEEcccCCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHH--------
Confidence 899999999999863 44567778889999999999999999999999999999999888888888888763
Q ss_pred eeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcceeEE----
Q 013207 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITV---- 167 (447)
Q Consensus 92 ~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~---- 167 (447)
..++||++|+||||...+.. +..++++..|++++++...-...+ ..+..
T Consensus 73 ------------------------~~~~~v~~v~GNHD~~~~~~--~~~~~l~~~g~v~vl~~~~~~~~~-~~~~~~~~~ 125 (333)
T 1ii7_A 73 ------------------------EHSIPVFAIEGNHDRTQRGP--SVLNLLEDFGLVYVIGMRKEKVEN-EYLTSERLG 125 (333)
T ss_dssp ------------------------TTTCCEEEECCTTTCCSSSC--CHHHHHHHTTSCEECEEESSCCCS-SSEEEEECT
T ss_pred ------------------------HCCCcEEEeCCcCCCccCCc--CHHHHHHHcCCcEEeccccccccc-ceeeecccC
Confidence 34789999999999986653 577889999987888732100000 01111
Q ss_pred -EEEEEecCCeeEEEEecCCCChHHHHhhhcChhHHh-hccchhhhhccccCceeEEEeecccccCC---C--CCccccc
Q 013207 168 -YPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQ-WMRPEAQEECQVSDWFNILVLHQNRVKTN---P--KNAINEH 240 (447)
Q Consensus 168 -~Pi~l~~g~~~vaiyGl~~~~~~~l~~~~~~~~~v~-~l~p~~~~~~~~~~~~~Ill~H~~~~~~~---~--~~~i~~~ 240 (447)
.++++......+++||++|.....+.+.. ..+. .+. ++..+|+++|+++.+.. . ...+...
T Consensus 126 ~~~~~~~~~~~~v~i~g~~~~~~~~~~~~~---~~l~~~~~---------~~~~~Ill~H~~~~~~~~~~~~~~~~~~~~ 193 (333)
T 1ii7_A 126 NGEYLVKGVYKDLEIHGMKYMSSAWFEANK---EILKRLFR---------PTDNAILMLHQGVREVSEARGEDYFEIGLG 193 (333)
T ss_dssp TSCEEEEEEETTEEEEEECCCCHHHHHSST---THHHHHCC---------CCSSEEEEEECCBHHHHHTTTCCCCSBCGG
T ss_pred CCceeeccCcCCEEEEecCCcCHHHHHHHH---HHHHHhhC---------CCCCeEEEEcCChhhcccccccccceecHH
Confidence 12222111146899999998765442210 0111 111 13459999999875321 0 1112233
Q ss_pred ccccCCcEEEeccccCcccCCcccCCCCceEeccCCccccccccC--------------ccCCceEEEEEEeCCeeEEEE
Q 013207 241 FLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEG--------------ESKPKHVLLLEIKENQYRPTK 306 (447)
Q Consensus 241 ~~~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~--------------E~~~Kg~~lvei~~~~~~~~~ 306 (447)
.++.++||||+||+|++|.. ..++..++||||+.++||+|. |..+|||++|+ ..++++
T Consensus 194 ~l~~~~dyvalGH~H~~q~~----~~~~~~i~ypGS~~~~~~~E~~~~~~~~G~~~~p~~~~~kg~~lv~----~~~~~~ 265 (333)
T 1ii7_A 194 DLPEGYLYYALGHIHKRYET----SYSGSPVVYPGSLERWDFGDYEVRYEWDGIKFKERYGVNKGFYIVE----DFKPRF 265 (333)
T ss_dssp GSCTTCSEEEEESCSSCEEE----EETTEEEEECCCSSCCSGGGCSEEEEECSSSEEEEECCCCEEEEEE----TTEEEE
T ss_pred HCCccCCEEEccccccceec----CCCCceEEEcCCCeecccchhccccccccccccccccCCCeEEEEe----cCceeE
Confidence 44568999999999998643 323478999999999999984 23489999999 367899
Q ss_pred EECCCCCcEEEEEEE
Q 013207 307 IPLTSVRPFEYTEII 321 (447)
Q Consensus 307 i~L~~~Rpf~~~~i~ 321 (447)
+|+++ |||...+++
T Consensus 266 i~l~~-r~~~~~~i~ 279 (333)
T 1ii7_A 266 VEIKV-RPFIDVKIK 279 (333)
T ss_dssp EECCC-CCEEEEEEE
T ss_pred EECCC-CceEEEEec
Confidence 99997 999877765
No 5
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=100.00 E-value=1.6e-33 Score=288.37 Aligned_cols=252 Identities=22% Similarity=0.318 Sum_probs=179.0
Q ss_pred CCCceEEEEEcCCCCCCCCCc-ccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCC
Q 013207 9 IANTVRILVATDCHLGYMEKD-EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDR 87 (447)
Q Consensus 9 ~~~~mrILh~SD~HLG~~~~~-~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~ 87 (447)
...+|||+|+||||+|....+ ..|..+.+.+|+++++.|.+++||+||++||+||...|+..++..+.+.|+++.
T Consensus 17 ~~~~mrilhiSD~Hlg~~~~~~~~r~~~~~~~l~~~v~~~~~~~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~---- 92 (386)
T 3av0_A 17 RGSHMMFVHIADNHLGYRQYNLDDREKDIYDSFKLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLH---- 92 (386)
T ss_dssp -CCCCEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHTTCCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHH----
T ss_pred CCCCeEEEEEccCCCCccccCcchhhHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH----
Confidence 456799999999999976543 235567788999999999999999999999999999999888777888888763
Q ss_pred CcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcceeEE
Q 013207 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITV 167 (447)
Q Consensus 88 ~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~ 167 (447)
..++||++|+||||.+......++..++... +++|+..
T Consensus 93 ----------------------------~~~~pv~~v~GNHD~~~~~~~~~~~~~l~~~--v~~l~~~------------ 130 (386)
T 3av0_A 93 ----------------------------ENNIKVYIVAGNHEMPRRLGEESPLALLKDY--VKILDGK------------ 130 (386)
T ss_dssp ----------------------------HTTCEEEECCCGGGSCSSTTSCCGGGGGTTT--CEECSEE------------
T ss_pred ----------------------------hcCCcEEEEcCCCCCCccccccCHHHHHHHH--eEEcCCC------------
Confidence 2478999999999998765432344455443 5555432
Q ss_pred EEEEEecCCeeEEEEecCCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCCCc-ccccccccCC
Q 013207 168 YPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNA-INEHFLPRFL 246 (447)
Q Consensus 168 ~Pi~l~~g~~~vaiyGl~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~-i~~~~~~~~~ 246 (447)
++.+. ++..+.++|++|........+. +.+.++.+.. ..+.++|+++|++..+..+..+ +....++. +
T Consensus 131 -~v~~~-~~~~v~i~gl~~~~~~~~~~~~---~~l~~l~~~~-----~~~~~~Ill~H~~~~~~~~~~~~~~~~~l~~-~ 199 (386)
T 3av0_A 131 -DVINV-NGEEIFICGTYYHKKSKREEML---DKLKNFESEA-----KNYKKKILMLHQGINPYIPLDYELEHFDLPK-F 199 (386)
T ss_dssp -EEEEE-TTEEEEEEEECCCCSTTHHHHH---HHHHHHHHHH-----HTCSSEEEEECCCCTTTSSSSCSSCGGGSCC-C
T ss_pred -cEEEe-CCCCEEEEeCCCCCHHHHHHHH---HHHHHhhhhc-----ccCCCEEEEECcCccccCCCCcccCHHHhhh-C
Confidence 23333 3357999999998654322221 1222222211 1257899999998754322111 22233454 9
Q ss_pred cEEEeccccCcccCCcccCCCCceEeccCCccccccccCcc---CCceEEEEEEeC---CeeEEEEEECCCCCcEEEEEE
Q 013207 247 DFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGES---KPKHVLLLEIKE---NQYRPTKIPLTSVRPFEYTEI 320 (447)
Q Consensus 247 D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~---~~Kg~~lvei~~---~~~~~~~i~L~~~Rpf~~~~i 320 (447)
|||++||+|.++. ....+..++||||+.+++++|.+. .+|||++|++++ +.++++++++. .||| +++
T Consensus 200 d~v~~GH~H~~~~----~~~~~~~i~ypGS~~~~~~~e~~~~~~~~kg~~lv~i~~~~~~~~~v~~i~l~-~r~~--~~~ 272 (386)
T 3av0_A 200 SYYALGHIHKRIL----ERFNDGILAYSGSTEIIYRNEYEDYKKEGKGFYLVDFSGNDLDISDIEKIDIE-CREF--VEV 272 (386)
T ss_dssp SEEEECSCCSCEE----EECSSSEEEECCCSSCCSGGGTHHHHHHCSEEEEEECCSSSCCGGGEEEEECC-CCCE--EEE
T ss_pred CeEEccCCCCCcc----ccCCCceEEECCcccccCcchhccccCCCCEEEEEEEecCcCCCceEEEEECC-ccee--EEE
Confidence 9999999999743 222356899999999999986421 579999999987 66789999995 7998 666
Q ss_pred Eecc
Q 013207 321 ILKD 324 (447)
Q Consensus 321 ~l~~ 324 (447)
++++
T Consensus 273 ~~~~ 276 (386)
T 3av0_A 273 NIKD 276 (386)
T ss_dssp EECS
T ss_pred eCCC
Confidence 6644
No 6
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=100.00 E-value=2.4e-33 Score=281.49 Aligned_cols=258 Identities=22% Similarity=0.271 Sum_probs=177.1
Q ss_pred CCceEEEEEcCCCCC----CCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCC-CCCCCCCCHHHHHHHHHHHHHhhc
Q 013207 10 ANTVRILVATDCHLG----YMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGD-LFHENKPSRSTLVKAIEILRRHCL 84 (447)
Q Consensus 10 ~~~mrILh~SD~HLG----~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGD-Lfd~~~ps~~~l~~~~~~L~~l~~ 84 (447)
.++|||+|+|||||| ....+..|.+++..+|+++++.+++++||+||++|| +||...|+..++..+.++|+++.
T Consensus 16 ~~~mrilh~SD~HlG~~~~~~~~~~~r~~~~~~~l~~lv~~~~~~~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~- 94 (336)
T 2q8u_A 16 LKELKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMM- 94 (336)
T ss_dssp CCEEEEEEEECCCBTCEECTTTCCEECHHHHHHHHHHHHHHHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHH-
T ss_pred cCceEEEEECcccCCCCccccccCcChhHHHHHHHHHHHHHHHHhCCCEEEECCccccCCCCCCHHHHHHHHHHHHHHH-
Confidence 467999999999999 556677788888999999999999999999999999 99999999988777888888762
Q ss_pred CCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCC-ceEEecceeccCCCcc
Q 013207 85 NDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACN-LVNYFGKMVLGGSGVG 163 (447)
Q Consensus 85 ~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g-~v~~fg~~~l~~~~~~ 163 (447)
.. +||++|+||||.+. .. ....++...| ++++++.. .
T Consensus 95 -------------------------------~~-~pv~~i~GNHD~~~-~~--~~~~~l~~~g~nv~v~~~~----~--- 132 (336)
T 2q8u_A 95 -------------------------------RT-APVVVLPGNHDWKG-LK--LFGNFVTSISSDITFVMSF----E--- 132 (336)
T ss_dssp -------------------------------HH-SCEEECCC-------CH--HHHHHHHHHCSSEEECCSS----S---
T ss_pred -------------------------------hc-CCEEEECCCCCccc-cc--cHHHHHHhcCCEEEEEecc----c---
Confidence 22 89999999999987 42 3445666544 35666543 1
Q ss_pred eeEEEEEEEecCCeeEEEEecCCCChHHHHhhhcC--hhHHhhccchhhhhccccCceeEEEeecccccCCC---C----
Q 013207 164 EITVYPILIRKGSTAVALYGLGNIRDERLNRMFQT--PHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNP---K---- 234 (447)
Q Consensus 164 ~i~~~Pi~l~~g~~~vaiyGl~~~~~~~l~~~~~~--~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~---~---- 234 (447)
.+ .|+.+. ...+.++|++|..+..+...+.. .+.+.++...........+.++|+++|++..+... .
T Consensus 133 ~~--~~~~~~--~~~v~i~glp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Ill~H~~~~~~~~~~~~~~~~ 208 (336)
T 2q8u_A 133 PV--DVEAKR--GQKVRILPFPYPDESEALRKNEGDFRFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLAGYAGIEQGR 208 (336)
T ss_dssp CE--EEECTT--SCEEEEEEECCC-------CCSSHHHHHHHHHHHHHHHHHHTCSSEEEEEEESEETTCC--------C
T ss_pred cc--CceEEe--CCCEEEEECCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCCEEEEECccccCCCCCCCccchh
Confidence 11 133333 34699999999876443211110 01122221111111001367899999999865321 1
Q ss_pred -CcccccccccCCcEEEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEEEEeCCe-eEEEEEECCCC
Q 013207 235 -NAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQ-YRPTKIPLTSV 312 (447)
Q Consensus 235 -~~i~~~~~~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~~~~-~~~~~i~L~~~ 312 (447)
..++..+++.++|||++||+|.++.. .. +..++||||+.++|++|. ..+|+|++|++++++ +++++++++.
T Consensus 209 ~~~v~~~l~~~~~d~v~~GH~H~~~~~----~~-~~~i~y~GS~~~~s~~e~-~~~~~~~lv~i~~~~~~~v~~i~~~~- 281 (336)
T 2q8u_A 209 EIIINRALIPSVVDYAALGHIHSFREI----QK-QPLTIYPGSLIRIDFGEE-ADEKGAVFVELKRGEPPRYERIDASP- 281 (336)
T ss_dssp CCEECGGGSCTTSSEEEEESCSSCEEE----EE-TTEEEECCCSSCCSGGGT-TCCCEEEEEEEETTSCCEEEEEECCC-
T ss_pred hcccCHHHccccCCEEEEccccCceEe----CC-CccEEECCCCcCCCcccc-CCCCEEEEEEEeCCCccEEEEEECCC-
Confidence 12444566778999999999997653 21 257999999999999874 458999999999764 7999999998
Q ss_pred CcEEEEEEE
Q 013207 313 RPFEYTEII 321 (447)
Q Consensus 313 Rpf~~~~i~ 321 (447)
|||...++.
T Consensus 282 r~~~~~~~~ 290 (336)
T 2q8u_A 282 LPLKTLYYK 290 (336)
T ss_dssp CCEEEEEEE
T ss_pred EEEEEeecc
Confidence 999998874
No 7
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=100.00 E-value=1.4e-33 Score=288.37 Aligned_cols=252 Identities=23% Similarity=0.316 Sum_probs=178.6
Q ss_pred eEEEEEcCCCCCCC----CCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCCCHHHHHHHHHHHHHhhcCCC
Q 013207 13 VRILVATDCHLGYM----EKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLF-HENKPSRSTLVKAIEILRRHCLNDR 87 (447)
Q Consensus 13 mrILh~SD~HLG~~----~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLf-d~~~ps~~~l~~~~~~L~~l~~~~~ 87 (447)
|||+|+||||+|.. ..+..+..+...+|+++++.+.+++||+||++||+| |...|+..++..+.+.|.++.
T Consensus 1 mrilh~SD~Hlg~~~~~~~~g~~~~~~~~~~l~~l~~~~~~~~~D~vliaGDl~hd~~~~~~~~~~~~~~~l~~l~---- 76 (379)
T 3tho_B 1 MKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMM---- 76 (379)
T ss_dssp CEEEEECCCCBTCEECSSSSCEECHHHHHHHHHHHHHHHHHHTCSEEEECSCCBSCSSSCCHHHHHHHHHHHHHHH----
T ss_pred CeEEEEcccCCCCCccccccCcChhHHHHHHHHHHHHHHHhcCCCEEEECCCccccCCCCCHHHHHHHHHHHHHHH----
Confidence 89999999999998 777778888899999999999999999999999999 888899888777778887763
Q ss_pred CcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhc--CCceEEecceeccCCCccee
Q 013207 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSA--CNLVNYFGKMVLGGSGVGEI 165 (447)
Q Consensus 88 ~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~--~g~v~~fg~~~l~~~~~~~i 165 (447)
.. +||++|+||||... ......+.. ...+.++..
T Consensus 77 ----------------------------~~-~~v~~i~GNHD~~~----~~~~~~~~~~~~~~~~~~~~----------- 112 (379)
T 3tho_B 77 ----------------------------RT-APVVVLPGNQDWKG----LKLFGNFVTSISSDITFVMS----------- 112 (379)
T ss_dssp ----------------------------HH-SCEEECCCTTSCTT----HHHHHHHHHTTCSSEEECCS-----------
T ss_pred ----------------------------hC-CCEEEEcCCCcccc----CccccccccccCCcceeecc-----------
Confidence 23 89999999999532 122222211 122323321
Q ss_pred EEEEEEEec-CCeeEEEEecCCCChHHHHhhhcChhHHhhccchhh----hhccccCceeEEEeecccccCCC----C--
Q 013207 166 TVYPILIRK-GSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQ----EECQVSDWFNILVLHQNRVKTNP----K-- 234 (447)
Q Consensus 166 ~~~Pi~l~~-g~~~vaiyGl~~~~~~~l~~~~~~~~~v~~l~p~~~----~~~~~~~~~~Ill~H~~~~~~~~----~-- 234 (447)
..|+.+.. .+..+.+||+||..+....+.+.. ....|+..... ... .++.++|+++|+++.+... .
T Consensus 113 -~~~v~l~~~~G~~v~i~glp~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~-~~~~~~I~l~H~~v~g~~~~~~se~~ 189 (379)
T 3tho_B 113 -FEPVDVEAKRGQKVRILPFPYPDESEALRKNEG-DFRFFLESRLNKLYEEAL-KKEDFAIFMGHFTVEGLAGYAGIEQG 189 (379)
T ss_dssp -SCCEEEECTTCCEEEEEEECCCCCC----CHHH-HHHHHHHHHHHHHHHHHH-TCSSEEEEEEESCBSCCCC-------
T ss_pred -cceEEEEcCCCCEEEEEECCCCCHHHHhhhhcc-chHHHHHHHHHHHHHHhc-CCCCCeEEEEeccccCCccCCCCccc
Confidence 12455543 334799999999875432221111 11222211111 111 1367899999999876432 1
Q ss_pred --CcccccccccCCcEEEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEEEEeCCe-eEEEEEECCC
Q 013207 235 --NAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQ-YRPTKIPLTS 311 (447)
Q Consensus 235 --~~i~~~~~~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~~~~-~~~~~i~L~~ 311 (447)
..++..+++.++||||+||+|.++ .+.+ +.+++|||||+++||+|. ..+|||++|++++++ .++++|| ..
T Consensus 190 ~~~~v~~~~~~~~~dyvalGH~H~~q----~~~~-~~~i~y~GS~~~~~f~E~-~~~k~~~lv~~~~~~~~~v~~i~-~~ 262 (379)
T 3tho_B 190 REIIINRALIPSVVDYAALGHIHSFR----EIQK-QPLTIYPGSLIRIDFGEE-ADEKGAVFVELKRGEPPRYERID-AS 262 (379)
T ss_dssp CSCCBCGGGSCTTSSEEEEESCSSCE----EEEE-TTEEEECCCSSCCSGGGS-SSCCEEEEEECCSSSCCEEEEEE-CC
T ss_pred cccccCHHHcCcCCCEEEcccccCCe----EeCC-CCcEEecCCCCCCCcccc-cCCCEEEEEEEcCCCcceEEEeC-CC
Confidence 134456777889999999999964 3432 358999999999999974 568999999998765 7899999 77
Q ss_pred CCcEEEEEEEe
Q 013207 312 VRPFEYTEIIL 322 (447)
Q Consensus 312 ~Rpf~~~~i~l 322 (447)
.|||..++++.
T Consensus 263 ~r~~~~~~~~~ 273 (379)
T 3tho_B 263 PLPLKTLYYKK 273 (379)
T ss_dssp CCCEEEEECSB
T ss_pred CeeeEEEEcCC
Confidence 89999988763
No 8
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=99.84 E-value=5.4e-21 Score=184.07 Aligned_cols=243 Identities=17% Similarity=0.218 Sum_probs=142.2
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcc
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~--~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~ 90 (447)
|||+|+||+|++..........+...+|+++++.+++. ++|+||++||+++...+ .....+.+.|++
T Consensus 1 mri~~iSD~H~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~l~~--------- 69 (274)
T 3d03_A 1 MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRP--EEYQVARQILGS--------- 69 (274)
T ss_dssp CEEEEECCCCBCSTTCCBTTTBCHHHHHHHHHHHHHTCSSCCSEEEEESCCBSSCCH--HHHHHHHHHHTT---------
T ss_pred CEEEEEecCCcCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCH--HHHHHHHHHHHh---------
Confidence 89999999999964322222256678899999999876 68999999999997643 333344444442
Q ss_pred eeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcceeEEEEE
Q 013207 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPI 170 (447)
Q Consensus 91 ~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~~Pi 170 (447)
.++|+++|+||||..... ...+... ++... ....... .
T Consensus 70 --------------------------l~~p~~~v~GNHD~~~~~-----~~~~~~~----~~~~~----~~~~~~~---~ 107 (274)
T 3d03_A 70 --------------------------LNYPLYLIPGNHDDKALF-----LEYLQPL----CPQLG----SDANNMR---C 107 (274)
T ss_dssp --------------------------CSSCEEEECCTTSCHHHH-----HHHHGGG----SGGGC----SCGGGCC---E
T ss_pred --------------------------cCCCEEEECCCCCCHHHH-----HHHhhhh----hcCcc----cCCCceE---E
Confidence 368999999999985321 1222211 11000 0000000 1
Q ss_pred EEecCCeeEEEEecCCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCC--C-c-c-c----ccc
Q 013207 171 LIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPK--N-A-I-N----EHF 241 (447)
Q Consensus 171 ~l~~g~~~vaiyGl~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~--~-~-i-~----~~~ 241 (447)
.+.. ..+.++|+...........+.. +.++|++...... .+.+.|+++|++....+.. + + . . ..+
T Consensus 108 ~~~~--~~~~~i~ld~~~~~~~~~~~~~-~~~~wl~~~l~~~---~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~l~~~ 181 (274)
T 3d03_A 108 AVDD--FATRLLFIDSSRAGTSKGWLTD-ETISWLEAQLFEG---GDKPATIFMHHPPLPLGNAQMDPIACENGHRLLAL 181 (274)
T ss_dssp EECS--SSSEEEECCCCCTTCSSBCCCH-HHHHHHHHHHHHH---TTSCEEEEESSCSSCCSCTTTGGGSBTTTHHHHHH
T ss_pred EEEe--CCEEEEEEeCCCCCCCCCeeCH-HHHHHHHHHHHhC---CCCCEEEEECCCCcccCCcccCcccCcCHHHHHHH
Confidence 1222 2467777754422110001111 3456665443321 2567899999987543211 0 0 0 0 122
Q ss_pred cc-c-CCcEEEeccccCcccCCcccCCCCceEeccCCcccccccc------CccCCceEEEEEEeCCeeEEEEEEC---C
Q 013207 242 LP-R-FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIE------GESKPKHVLLLEIKENQYRPTKIPL---T 310 (447)
Q Consensus 242 ~~-~-~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e------~E~~~Kg~~lvei~~~~~~~~~i~L---~ 310 (447)
+. . ++|++++||+|..+.. .. .+...+++|||..+..+.. ....+++|.++++++++++++.+++ .
T Consensus 182 l~~~~~v~~vl~GH~H~~~~~--~~-~g~~~~~~pg~~~~~~~~~~~~~~~~~~~~~gy~i~~i~~~~~~~~~~~~~~~~ 258 (274)
T 3d03_A 182 VERFPSLTRIFCGHNHSLTMT--QY-RQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYA 258 (274)
T ss_dssp HHHCTTEEEEEECSSSSCEEE--EE-TTEEEEECCCSSCBCCCCSSCCSCEEBCCCCEEEEEEEETTEEEEEEEECSCCS
T ss_pred HHhCCCceEEEeCCCCCchhh--eE-CCEEEEEcCCcceeeccCCCccccccccCCCceEEEEEeCCcEEEEEEecCCCC
Confidence 32 2 6899999999997642 22 2225778999987654321 1245789999999999888887777 3
Q ss_pred CCCcEEE
Q 013207 311 SVRPFEY 317 (447)
Q Consensus 311 ~~Rpf~~ 317 (447)
.++||..
T Consensus 259 ~~~~f~~ 265 (274)
T 3d03_A 259 GPWLYDE 265 (274)
T ss_dssp CCEECCH
T ss_pred CCCCccC
Confidence 3455543
No 9
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=99.84 E-value=1.3e-20 Score=186.41 Aligned_cols=242 Identities=16% Similarity=0.170 Sum_probs=142.7
Q ss_pred CCCCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHH--cCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 013207 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ--KEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLN 85 (447)
Q Consensus 8 ~~~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~--~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~ 85 (447)
.....|||+|+||+|++..........+....|+++++.+.+ .++|+||++|||++...+ .....+.++|+++..
T Consensus 21 ~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~l~~l~~- 97 (330)
T 3ib7_A 21 HPRPDYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEP--AAYRKLRGLVEPFAA- 97 (330)
T ss_dssp SCCCSEEEEEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHHHTCCCSEEEECSCCBTTCCH--HHHHHHHHHHHHHHH-
T ss_pred CCCCCeEEEEEeCCccCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCH--HHHHHHHHHHHHHHh-
Confidence 345679999999999987654444445678899999999998 899999999999998754 444445566665420
Q ss_pred CCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCccee
Q 013207 86 DRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEI 165 (447)
Q Consensus 86 ~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i 165 (447)
..++||++|+||||.... ....+..... .++..
T Consensus 98 ------------------------------~~~~pv~~v~GNHD~~~~-----~~~~~~~~~~--~~~~~---------- 130 (330)
T 3ib7_A 98 ------------------------------QLGAELVWVMGNHDDRAE-----LRKFLLDEAP--SMAPL---------- 130 (330)
T ss_dssp ------------------------------HHTCEEEECCCTTSCHHH-----HHHHHHCCCC--CCSCC----------
T ss_pred ------------------------------hcCCCEEEeCCCCCCHHH-----HHHHhccccc--ccCCc----------
Confidence 137899999999997421 1112211110 00000
Q ss_pred EEEEEEEecCCeeEEEEecCCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCC--Cc-------
Q 013207 166 TVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPK--NA------- 236 (447)
Q Consensus 166 ~~~Pi~l~~g~~~vaiyGl~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~--~~------- 236 (447)
...+..+ .+.++++...........+.. ..++|++...... .....|+++|++....+.. ..
T Consensus 131 ---~~~~~~~--~~~~i~lds~~~~~~~~~~~~-~q~~wl~~~l~~~---~~~~~iv~~Hh~p~~~~~~~~~~~~~~~~~ 201 (330)
T 3ib7_A 131 ---DRVCMID--GLRIIVLDTSVPGHHHGEIRA-SQLGWLAEELATP---APDGTILALHHPPIPSVLDMAVTVELRDQA 201 (330)
T ss_dssp ---CEEEEET--TEEEEECCCCCTTCCSBCCCH-HHHHHHHHHTTSC---CTTCEEEECSSCSSCCSSGGGGGGSBSCHH
T ss_pred ---ceEEEeC--CEEEEEecCCCCCCCCCccCH-HHHHHHHHHHHhc---ccCCeEEEEECCCCCCCccccccccccCHH
Confidence 0011112 233444432210000000011 3445554443221 2334899999987543211 00
Q ss_pred -ccccccccCCcEEEeccccCcccCCcccCCCCceEeccCCcccccc-------ccCccCCceEEEEEEeCCeeEEEEEE
Q 013207 237 -INEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSL-------IEGESKPKHVLLLEIKENQYRPTKIP 308 (447)
Q Consensus 237 -i~~~~~~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~-------~e~E~~~Kg~~lvei~~~~~~~~~i~ 308 (447)
+.+.+...++|+|++||+|..+.. .. .+..++++||+....- ...+..+++|.+++++++++.+++++
T Consensus 202 ~l~~~l~~~~v~~v~~GH~H~~~~~--~~--~g~~~~~~gs~~~~~~~~~~~g~~~~~~~~~gy~iv~i~~~~~~~~~v~ 277 (330)
T 3ib7_A 202 ALGRVLRGTDVRAILAGHLHYSTNA--TF--VGIPVSVASATCYTQDLTVAAGGTRGRDGAQGCNLVHVYPDTVVHSVIP 277 (330)
T ss_dssp HHHHHHTTSSEEEEEECSSSSCEEE--EE--TTEEEEECCCSSCEECTTSCTTCCCEESCSCEEEEEEECSSCEEEEEEE
T ss_pred HHHHHHhccCceEEEECCCCCcccc--eE--CCEEEEecCcceeccCCCCCCcceeccCCCCceEEEEEECCCeEEEEec
Confidence 111122357999999999997642 22 3456778888763211 11124578999999999999999999
Q ss_pred CCCC
Q 013207 309 LTSV 312 (447)
Q Consensus 309 L~~~ 312 (447)
+...
T Consensus 278 ~~~~ 281 (330)
T 3ib7_A 278 LGGG 281 (330)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8753
No 10
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=99.81 E-value=2.3e-19 Score=167.77 Aligned_cols=203 Identities=15% Similarity=0.174 Sum_probs=117.4
Q ss_pred CceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcc
Q 013207 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (447)
Q Consensus 11 ~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~ 90 (447)
.+|||+++||+|++ ...++++++.+.++++|+|+++||+++...+ ...+.++++.|++
T Consensus 4 ~~mri~~iSD~H~~------------~~~~~~~~~~~~~~~~D~vi~~GDl~~~~~~-~~~~~~~~~~l~~--------- 61 (228)
T 1uf3_A 4 TVRYILATSNPMGD------------LEALEKFVKLAPDTGADAIALIGNLMPKAAK-SRDYAAFFRILSE--------- 61 (228)
T ss_dssp CCCEEEEEECCTTC------------HHHHHHHHTHHHHHTCSEEEEESCSSCTTCC-HHHHHHHHHHHGG---------
T ss_pred ceEEEEEEeeccCC------------HHHHHHHHHHHhhcCCCEEEECCCCCCCCCC-HHHHHHHHHHHHh---------
Confidence 46999999999987 3457889999988899999999999997643 3333334444432
Q ss_pred eeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhc--------CCceEEecceeccCCCc
Q 013207 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSA--------CNLVNYFGKMVLGGSGV 162 (447)
Q Consensus 91 ~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~--------~g~v~~fg~~~l~~~~~ 162 (447)
.++||++|+||||.... +.+.. .+.....+.
T Consensus 62 --------------------------~~~pv~~v~GNHD~~~~-------~~~~~~~~~~~~~~~~~~l~~~-------- 100 (228)
T 1uf3_A 62 --------------------------AHLPTAYVPGPQDAPIW-------EYLREAANVELVHPEMRNVHET-------- 100 (228)
T ss_dssp --------------------------GCSCEEEECCTTSCSHH-------HHHHHHHHHHHHCTTEEECBTS--------
T ss_pred --------------------------cCCcEEEECCCCCchhH-------HHHHhhhhhhccCcceEEcccc--------
Confidence 36799999999998642 11211 122211111
Q ss_pred ceeEEEEEEEecCCeeEEEEecCCCC-------hHHHHh--hhcChhHHhhccchhhhhccccCceeEEEeecccccCCC
Q 013207 163 GEITVYPILIRKGSTAVALYGLGNIR-------DERLNR--MFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNP 233 (447)
Q Consensus 163 ~~i~~~Pi~l~~g~~~vaiyGl~~~~-------~~~l~~--~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~ 233 (447)
.+.+. ..+.++|+++.. ++.+.+ .+......+++... .+.+.|+++|++..+...
T Consensus 101 ------~~~~~---~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~il~~H~p~~~~~~ 164 (228)
T 1uf3_A 101 ------FTFWR---GPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKALWEL-------KDYPKIFLFHTMPYHKGL 164 (228)
T ss_dssp ------EEEET---TTEEEEEECSEEESSSCCBSSSSCEEEHHHHHHHHGGGGGS-------CSCCEEEEESSCBCBTTT
T ss_pred ------eEeeC---CCcEEecCCCCcCCCCccChhhcccchhhhHHHHHHHHHhC-------CCCCeEEEEccCcccCCc
Confidence 01121 146677765321 111100 00000001233211 134799999998754211
Q ss_pred CC----cccccccccCCcEEEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEEEEeCCeeEEEEEEC
Q 013207 234 KN----AINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPL 309 (447)
Q Consensus 234 ~~----~i~~~~~~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~~~~~~~~~i~L 309 (447)
.. .+.+.+...++|++++||+|..+ ... ++..+++|||.. +++++++++++ .+++++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~GH~H~~~---~~~--~~~~~in~Gs~~----------~~~~~i~~~~~--~~~~~~~v 227 (228)
T 1uf3_A 165 NEQGSHEVAHLIKTHNPLLVLVAGKGQKH---EML--GASWVVVPGDLS----------EGEYSLLDLRA--RKLETGNV 227 (228)
T ss_dssp BTTSBHHHHHHHHHHCCSEEEECCSSCEE---EEE--TTEEEEECCBGG----------GTEEEEEETTT--TEEEEEEC
T ss_pred cccCHHHHHHHHHHhCCCEEEEcccccCc---ccc--CCceEEEecccC----------CCceEEEEecc--eEeeeccc
Confidence 10 11111113468999999999432 122 346789999864 45799999876 55666654
No 11
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=99.78 E-value=1e-18 Score=167.33 Aligned_cols=211 Identities=10% Similarity=0.192 Sum_probs=118.2
Q ss_pred CceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHH--------------H-----
Q 013207 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRS--------------T----- 71 (447)
Q Consensus 11 ~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~--------------~----- 71 (447)
.+|||+|+||+|++. ..|+++++.+.+.++|+||++|||++...++.. .
T Consensus 4 ~~mri~~iSDlH~~~------------~~~~~~l~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 71 (260)
T 2yvt_A 4 MPRKVLAIKNFKERF------------DLLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENE 71 (260)
T ss_dssp CCCEEEEEECCTTCG------------GGHHHHHHHHHHHCCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHH
T ss_pred ceEEEEEEeecCCCh------------HHHHHHHHHHHhcCCCEEEECCCCCCccCcchhhhhhhhhhcccchhhhhHHH
Confidence 469999999999974 247888888888999999999999997643210 0
Q ss_pred ---HHHHHHHHHHhhcCCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCc
Q 013207 72 ---LVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNL 148 (447)
Q Consensus 72 ---l~~~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~ 148 (447)
...+.++|+.+. ..++||++|+||||..... ...+.+...+.
T Consensus 72 ~~~~~~~~~~l~~l~--------------------------------~~~~pv~~v~GNHD~~~~~---~~~~~~~~~~~ 116 (260)
T 2yvt_A 72 HYIIETLDKFFREIG--------------------------------ELGVKTFVVPGKNDAPLKI---FLRAAYEAETA 116 (260)
T ss_dssp HHHHHHHHHHHHHHH--------------------------------TTCSEEEEECCTTSCCHHH---HHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHH--------------------------------hcCCcEEEEcCCCCchhhh---hHHHHhhhccC
Confidence 022334444431 2468999999999986421 11134444332
Q ss_pred ---eEEecceeccCCCcceeEEEEEEEecCCeeEEEEecCCCCh------HHHHh--hhcChhHHhhccchhhhhccccC
Q 013207 149 ---VNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRD------ERLNR--MFQTPHAVQWMRPEAQEECQVSD 217 (447)
Q Consensus 149 ---v~~fg~~~l~~~~~~~i~~~Pi~l~~g~~~vaiyGl~~~~~------~~l~~--~~~~~~~v~~l~p~~~~~~~~~~ 217 (447)
+..+.. . ..+..+ .+.++|+++... +.+.+ .+ ....++ +.... ...
T Consensus 117 ~~~~~~l~~---------~-----~~~~~~--~~~i~g~~~~~~~~~~~~~~~~~~~~~---~~~~~l-~~l~~---~~~ 173 (260)
T 2yvt_A 117 YPNIRVLHE---------G-----FAGWRG--EFEVIGFGGLLTEHEFEEDFVLKYPRW---YVEYIL-KFVNE---LKP 173 (260)
T ss_dssp CTTEEECSS---------E-----EEEETT--TEEEEEECSEEESSCCBSSSSCEEEHH---HHHHHG-GGGGG---SCC
T ss_pred CcceEEecC---------c-----ceEEEC--CEEEEecCCCcCCCCcCHHHHhhcchh---hHHHHH-HHHHh---cCC
Confidence 111111 0 011222 367788775321 11100 00 000122 11111 113
Q ss_pred ceeEEEeecccccCCCC----C--ccc----cccc-ccCCcEEEeccccCcccCCcccCCCCceEeccCCccccccccCc
Q 013207 218 WFNILVLHQNRVKTNPK----N--AIN----EHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGE 286 (447)
Q Consensus 218 ~~~Ill~H~~~~~~~~~----~--~i~----~~~~-~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E 286 (447)
...|+++|++..+.... . ... ..++ ...+|+|++||+|.. + ... ++..+++|||...
T Consensus 174 ~~~Il~~H~pp~~~~~d~~~~~~~~~~~~~l~~~~~~~~~~~vl~GH~H~~-~--~~~--~~~~~in~Gs~~~------- 241 (260)
T 2yvt_A 174 RRLVTIFYTPPIGEFVDRTPEDPKHHGSAVVNTIIKSLNPEVAIVGHVGKG-H--ELV--GNTIVVNPGEFEE------- 241 (260)
T ss_dssp CEEEEEESSCCSCSSTTCBTTBSCCCSCHHHHHHHHHHCCSEEEECSSCCE-E--EEE--TTEEEEECCBGGG-------
T ss_pred CCEEEEECCCccccccccCcccccccCcHHHHHHHHHhCCCEEEECCccCC-c--EEe--CCEEEEeCCCCCC-------
Confidence 56799999986432100 0 000 0111 236899999999933 2 122 3467899998652
Q ss_pred cCCceEEEEEEeCCeeEEEE
Q 013207 287 SKPKHVLLLEIKENQYRPTK 306 (447)
Q Consensus 287 ~~~Kg~~lvei~~~~~~~~~ 306 (447)
.++++++++++.+++..
T Consensus 242 ---g~~~ii~~~~~~~~~~~ 258 (260)
T 2yvt_A 242 ---GRYAFLDLTQHKIKLEQ 258 (260)
T ss_dssp ---TEEEEEETTTTEEEEEE
T ss_pred ---CceEEEEEcCCEEEeee
Confidence 28999999887665543
No 12
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=99.72 E-value=5.3e-17 Score=149.84 Aligned_cols=185 Identities=16% Similarity=0.202 Sum_probs=110.1
Q ss_pred CCCCCCCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013207 5 PREDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCL 84 (447)
Q Consensus 5 ~~~~~~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~ 84 (447)
++-...+||||+++||+|++..... ....+. +.+.+.++|+|+++||+++ . .+++.|+++
T Consensus 3 ~~~~~~~mm~i~~iSD~H~~~~~~~------~~~~l~---~~~~~~~~d~ii~~GDl~~-----~----~~~~~l~~~-- 62 (192)
T 1z2w_A 3 PEFGTRDRMLVLVLGDLHIPHRCNS------LPAKFK---KLLVPGKIQHILCTGNLCT-----K----ESYDYLKTL-- 62 (192)
T ss_dssp --------CEEEEECCCCBTTTCSS------CCHHHH---TTCCTTSCSEEEECSCCBS-----H----HHHHHHHHH--
T ss_pred CccCcccceEEEEEecCCCCccchh------HHHHHH---HHhccCCCCEEEEcCCCCC-----H----HHHHHHHhc--
Confidence 3444567899999999999753211 112232 2333578999999999996 2 245666653
Q ss_pred CCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcce
Q 013207 85 NDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGE 164 (447)
Q Consensus 85 ~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~ 164 (447)
+.|+++|.||||..... ...
T Consensus 63 ---------------------------------~~~~~~v~GNhD~~~~l------------------p~~--------- 82 (192)
T 1z2w_A 63 ---------------------------------AGDVHIVRGDFDENLNY------------------PEQ--------- 82 (192)
T ss_dssp ---------------------------------CSEEEECCCTTCCCTTS------------------CSE---------
T ss_pred ---------------------------------CCCEEEEcCCcCccccC------------------Ccc---------
Confidence 45899999999975410 000
Q ss_pred eEEEEEEEecCCeeEEEEecCCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccCCC-CCcccccccc
Q 013207 165 ITVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNP-KNAINEHFLP 243 (447)
Q Consensus 165 i~~~Pi~l~~g~~~vaiyGl~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~-~~~i~~~~~~ 243 (447)
..+.. +..+|+++|+....... ...+.+.+..
T Consensus 83 -----~~~~~------------------------------------------~~~~i~l~Hg~~~~~~~~~~~l~~~~~~ 115 (192)
T 1z2w_A 83 -----KVVTV------------------------------------------GQFKIGLIHGHQVIPWGDMASLALLQRQ 115 (192)
T ss_dssp -----EEEEE------------------------------------------TTEEEEEECSCCCCBTTCHHHHHHHHHH
T ss_pred -----eEEEE------------------------------------------CCEEEEEECCCcCCCCCCHHHHHHHHHh
Confidence 00000 23467888865422110 0011111112
Q ss_pred cCCcEEEeccccCcccCCcccCCCCceEeccCCcccc-ccccCccCCceEEEEEEeCCeeEEEEEECCCCCcEEEEEEEe
Q 013207 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVAT-SLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIIL 322 (447)
Q Consensus 244 ~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~-s~~e~E~~~Kg~~lvei~~~~~~~~~i~L~~~Rpf~~~~i~l 322 (447)
.++|++++||+|..... . .++..+++|||+... ...+ +..+++|+++++++++++++.+++...+ +...++++
T Consensus 116 ~~~d~vi~GHtH~~~~~--~--~~~~~~inpGS~~~~~~~~~-~~~~~~y~il~~~~~~~~~~~~~~~~~~-~~v~~~~~ 189 (192)
T 1z2w_A 116 FDVDILISGHTHKFEAF--E--HENKFYINPGSATGAYNALE-TNIIPSFVLMDIQASTVVTYVYQLIGDD-VKVERIEY 189 (192)
T ss_dssp HSSSEEECCSSCCCEEE--E--ETTEEEEECCCTTCCCCSSC-SCCCCEEEEEEEETTEEEEEEEEEETTE-EEEEEEEE
T ss_pred cCCCEEEECCcCcCccE--e--ECCEEEEECCcccccCCCCC-cCCCCcEEEEEEECCEEEEEEEEccCCE-EEEEEEEE
Confidence 46899999999997542 2 235788999998542 2212 2456899999999988999999987543 55555544
No 13
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=99.72 E-value=1.5e-16 Score=149.67 Aligned_cols=99 Identities=19% Similarity=0.209 Sum_probs=63.4
Q ss_pred ceeEEEeecccccCC-CCCcccccccccCCcEEEeccccCcccCCcccCCCCceEeccCCcccc-ccccCccCCceEEEE
Q 013207 218 WFNILVLHQNRVKTN-PKNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVAT-SLIEGESKPKHVLLL 295 (447)
Q Consensus 218 ~~~Ill~H~~~~~~~-~~~~i~~~~~~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~-s~~e~E~~~Kg~~lv 295 (447)
..+|+++|+...... ....+...+...++|++++||+|..... .. ++..+++|||.... +..+ ...+++|+++
T Consensus 113 ~~~i~l~Hg~~~~~~~~~~~l~~~~~~~~~d~vl~GHtH~~~~~--~~--~~~~~inpGS~~~~~~~~~-~~~~~~y~il 187 (215)
T 2a22_A 113 EFKIGLMHGNQVLPWDDPGSLEQWQRRLDCDILVTGHTHKLRVF--EK--NGKLFLNPGTATGAFSALT-PDAPPSFMLM 187 (215)
T ss_dssp TEEEEEECSTTSSSTTCHHHHHHHHHHHTCSEEEECSSCCCEEE--EE--TTEEEEECCCSSCCCCTTS-TTCCCEEEEE
T ss_pred CeEEEEEcCCccCCCCCHHHHHHHHhhcCCCEEEECCcCCCccE--ee--CCEEEEECCcccccCCCCC-CCCCCcEEEE
Confidence 468999997553211 0011111111346899999999997542 22 35688999998542 2222 2456899999
Q ss_pred EEeCCeeEEEEEECCCCCcEEEEEEEe
Q 013207 296 EIKENQYRPTKIPLTSVRPFEYTEIIL 322 (447)
Q Consensus 296 ei~~~~~~~~~i~L~~~Rpf~~~~i~l 322 (447)
++++++++++.+++..- .+...++..
T Consensus 188 ~i~~~~i~~~~~~~~~~-~~~v~~~~~ 213 (215)
T 2a22_A 188 ALQGNKVVLYVYDLRDG-KTNVAMSEF 213 (215)
T ss_dssp EEETTEEEEEEEEEETT-EEEEEEEEE
T ss_pred EEeCCcEEEEEEEecCC-eEEEEEEEe
Confidence 99999999999998753 455555543
No 14
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=99.71 E-value=1.6e-16 Score=164.38 Aligned_cols=248 Identities=17% Similarity=0.149 Sum_probs=136.1
Q ss_pred CCCceEEEEEcCCCCCCCCC---c-----------ccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHH
Q 013207 9 IANTVRILVATDCHLGYMEK---D-----------EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVK 74 (447)
Q Consensus 9 ~~~~mrILh~SD~HLG~~~~---~-----------~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~ 74 (447)
...+|||+|+||+|+|.... + ..........++.+++.+++.++|+||++||+++...+. ....
T Consensus 36 ~~~~~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~~--~~~~ 113 (443)
T 2xmo_A 36 KDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESKKTDVLIISGDLTNNGEKT--SHEE 113 (443)
T ss_dssp SCCCEEEEEECCCCBCCGGGBCCCHHHHHHHHTSTTCCGGGHHHHHHHHHHHHHHHTCSEEEEESCCBSSCCHH--HHHH
T ss_pred CCCCeEEEEEeCCCCCCccccccchhhhcccccccccccccHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHH--HHHH
Confidence 45679999999999985421 0 001123567899999999999999999999999876432 3344
Q ss_pred HHHHHHHhhcCCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcc---------------hh
Q 013207 75 AIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNL---------------SA 139 (447)
Q Consensus 75 ~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~---------------~~ 139 (447)
+.+.|+++. ..++||++|+||||........ ..
T Consensus 114 ~~~~l~~l~--------------------------------~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (443)
T 2xmo_A 114 LAKKLTQVE--------------------------------KNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDF 161 (443)
T ss_dssp HHHHHHHHH--------------------------------HTTCEEEEECCTTTSSCTTCEEEETTEEEECCCCCHHHH
T ss_pred HHHHHHHHH--------------------------------hCCCeEEEECCcCCCCCccccccCCcccccccccCHHHH
Confidence 556666542 2378999999999986542110 00
Q ss_pred hhhhhcCCceEEecceeccCCCcceeEEEEEEEecCCeeEEEEecCCCChH--H------HHhhhcChhHHhhccchhhh
Q 013207 140 VDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDE--R------LNRMFQTPHAVQWMRPEAQE 211 (447)
Q Consensus 140 ~d~L~~~g~v~~fg~~~l~~~~~~~i~~~Pi~l~~g~~~vaiyGl~~~~~~--~------l~~~~~~~~~v~~l~p~~~~ 211 (447)
...+...|+...+... . ... +..+. ....+.++|++..... . ....+.. +.++|++.....
T Consensus 162 ~~~~~~~~~~~~~~~~----~--~~~---~y~~~-~~~~~~~i~Lds~~~~~~~~~~~~~~~g~~~~-~ql~wL~~~L~~ 230 (443)
T 2xmo_A 162 SKIYSDFGYEDAISSD----E--FSL---SYLAA-PSSKVWLLMLDTAIYKTNMQQGNPTTEGGLTA-GTLDWIKESSAL 230 (443)
T ss_dssp HHHTCCCCCTTCSEEC----S--SSS---CEEEC-SBSSEEEEECCCBCCTTHHHHTSCCCCBCCCH-HHHHHHHHHHHH
T ss_pred HHHhhhcChhhhhccC----C--CCc---eEEEe-cCCCEEEEEeeCCCcCcccccCCCCcCCccCH-HHHHHHHHHHHH
Confidence 1112211211000000 0 000 11111 1124556665432100 0 0000111 345566544322
Q ss_pred hccccCceeEEEeecccccCCCC---Ccc-------cccccccCCcEEEeccccCcccCCcc-cCCCCceEeccCCcccc
Q 013207 212 ECQVSDWFNILVLHQNRVKTNPK---NAI-------NEHFLPRFLDFVVWGHEHECLIDPQE-VPGMGFHLTQPGSSVAT 280 (447)
Q Consensus 212 ~~~~~~~~~Ill~H~~~~~~~~~---~~i-------~~~~~~~~~D~v~~GH~H~~~i~pq~-~~~~~~~i~ypGS~~~~ 280 (447)
. +..+...|+++|++....+.. .+. .+.+...++|++++||+|........ ..+.+...+.+||...
T Consensus 231 ~-~~~~~~~Iv~~H~p~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~lvl~GH~H~~~~~~~~~~~g~~~~~i~~gs~~~- 308 (443)
T 2xmo_A 231 A-KKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTEGAMDFSLSGHIHTQNIRSAKSTDGKEITDIVTNALSV- 308 (443)
T ss_dssp H-HHTTCEEEEECSSBSSCSSCC--CCSBCTTHHHHHHHHHHTTCCEEEECSSCSCEEEEEECTTSCEEEEEECCCTTS-
T ss_pred H-HHcCCeEEEEECCCCcccccccccccccccHHHHHHHHHHcCCeEEEECCcccCchhhcccCCCCceEEEEcCcccc-
Confidence 1 112467899999998543210 010 01112247999999999997653111 1122356677787432
Q ss_pred ccccCccCCceEEEEEEeCCe--eEEEEEECC
Q 013207 281 SLIEGESKPKHVLLLEIKENQ--YRPTKIPLT 310 (447)
Q Consensus 281 s~~e~E~~~Kg~~lvei~~~~--~~~~~i~L~ 310 (447)
.+.++.++++++++ ++++.+.+.
T Consensus 309 -------~p~~y~il~i~~~~~~~~~~~~~l~ 333 (443)
T 2xmo_A 309 -------FPHKYGNITYSAKNKNFTYQSQKLD 333 (443)
T ss_dssp -------TTCEEEEEEEETTTTEEEEEEEECC
T ss_pred -------CCCCeEEEEEeCCCceEEEEEEEEe
Confidence 46799999999876 666666654
No 15
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=99.65 E-value=3.5e-16 Score=143.08 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=42.0
Q ss_pred cCCcEEEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEEEEeCCeeEEEEEEC
Q 013207 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPL 309 (447)
Q Consensus 244 ~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~~~~~~~~~i~L 309 (447)
.++|++++||+|.+... +. ++..+++|||... ++++++++++++++++.++|
T Consensus 127 ~~~d~vi~GHtH~~~~~--~~--~~~~~iNpGS~~~----------~sy~il~~~~~~~~~~~~~l 178 (178)
T 2kkn_A 127 EKPQVILFGHTHEPEDT--VK--AGVRFLNPGSLAE----------GSYAVLELDGGEVRFELKTL 178 (178)
T ss_dssp SCCSEEECCSCSSCCEE--EE--TTEEEECCCCTTT----------TEEEEEEEETTEEEEEEEEC
T ss_pred cCCCEEEECccCCCCeE--Ee--CCEEEEECCCCCC----------CeEEEEEECCCEEEEEEEeC
Confidence 56899999999997642 22 3578899999753 78999999999898888875
No 16
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=99.65 E-value=8.5e-16 Score=150.27 Aligned_cols=87 Identities=16% Similarity=0.186 Sum_probs=63.8
Q ss_pred CCceEEEEEcCCCCCCCCCcc-------cccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCC----HHHHHHHHHH
Q 013207 10 ANTVRILVATDCHLGYMEKDE-------IRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPS----RSTLVKAIEI 78 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~-------~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps----~~~l~~~~~~ 78 (447)
...|||+|+||+|++...... ....+....++++++.+.+.++|+||++||+++...+. ...+..+++.
T Consensus 3 ~~~~~i~~isD~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~ 82 (322)
T 2nxf_A 3 DPVFTFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRRERVQCVVQLGDIIDGHNRRRDASDRALDTVMAE 82 (322)
T ss_dssp CCSEEEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHHHTTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHH
T ss_pred CCceEEEEEeeccccccCcccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCccCCCCCcchHHHHHHHHHHHH
Confidence 456999999999999753221 22345567899999999889999999999999975311 2333444444
Q ss_pred HHHhhcCCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCC
Q 013207 79 LRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (447)
Q Consensus 79 L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~ 131 (447)
|++ .++|+++++||||..
T Consensus 83 l~~-----------------------------------~~~p~~~v~GNHD~~ 100 (322)
T 2nxf_A 83 LDA-----------------------------------CSVDVHHVWGNHEFY 100 (322)
T ss_dssp HHT-----------------------------------TCSEEEECCCHHHHH
T ss_pred HHh-----------------------------------cCCcEEEecCCCCcc
Confidence 443 368999999999983
No 17
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=99.64 E-value=8.7e-16 Score=141.88 Aligned_cols=162 Identities=19% Similarity=0.290 Sum_probs=103.2
Q ss_pred CceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcc
Q 013207 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (447)
Q Consensus 11 ~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~ 90 (447)
+||||+++||+| |. ..+++++++.+.+.++|+|+++||+++. + +++.|++
T Consensus 24 g~m~i~~iSD~H-g~-----------~~~l~~~l~~~~~~~~D~ii~~GDl~~~-----~----~~~~l~~--------- 73 (190)
T 1s3l_A 24 GHMKIGIMSDTH-DH-----------LPNIRKAIEIFNDENVETVIHCGDFVSL-----F----VIKEFEN--------- 73 (190)
T ss_dssp --CEEEEECCCT-TC-----------HHHHHHHHHHHHHSCCSEEEECSCCCST-----H----HHHHGGG---------
T ss_pred CCeEEEEEeeCC-CC-----------HHHHHHHHHHHhhcCCCEEEECCCCCCH-----H----HHHHHHh---------
Confidence 359999999999 31 4678999999988999999999999972 1 3344432
Q ss_pred eeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcceeEEEEE
Q 013207 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPI 170 (447)
Q Consensus 91 ~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~~Pi 170 (447)
.+.|+++|+||||..... ....+...+ + +.+.
T Consensus 74 --------------------------l~~~~~~V~GNhD~~~~~----~~~~~~~~~------------~--~~l~---- 105 (190)
T 1s3l_A 74 --------------------------LNANIIATYGNNDGERCK----LKEWLKDIN------------E--ENII---- 105 (190)
T ss_dssp --------------------------CSSEEEEECCTTCCCHHH----HHHHHHHHC------------T--TCEE----
T ss_pred --------------------------cCCCEEEEeCCCcchHHH----HHHHhcccC------------h--hhhc----
Confidence 257999999999985321 111111000 0 0000
Q ss_pred EEecCCeeEEEEecCCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCCCccccccccc-CCcEE
Q 013207 171 LIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPR-FLDFV 249 (447)
Q Consensus 171 ~l~~g~~~vaiyGl~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~i~~~~~~~-~~D~v 249 (447)
..+ ..+. .+.++|+++|++..+ +.+.+... ++|++
T Consensus 106 ------------~~~-----------------~~~~---------~~~~~ill~Hg~~~~------l~~~~~~~~~~d~v 141 (190)
T 1s3l_A 106 ------------DDF-----------------ISVE---------IDDLKFFITHGHHQS------VLEMAIKSGLYDVV 141 (190)
T ss_dssp ------------ESE-----------------EEEE---------ETTEEEEEEESCCHH------HHHHHHHHSCCSEE
T ss_pred ------------ccc-----------------eEEe---------eCCcEEEEECCChHH------HHHHHHhcCCCCEE
Confidence 000 0000 135789999986522 11222233 69999
Q ss_pred EeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEEEEeCCeeE
Q 013207 250 VWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYR 303 (447)
Q Consensus 250 ~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~~~~~~ 303 (447)
++||+|.+++. . .++..+++|||... . . ..+.+++++++++++++
T Consensus 142 l~GHtH~~~~~--~--~~~~~~iNpGs~~~--r-~--~~~~~y~il~~~~~~v~ 186 (190)
T 1s3l_A 142 IYGHTHERVFE--E--VDDVLVINPGECCG--Y-L--TGIPTIGILDTEKKEYR 186 (190)
T ss_dssp EEECSSCCEEE--E--ETTEEEEECCCSSC--T-T--TSCCEEEEEETTTTEEE
T ss_pred EECCCCCcceE--E--ECCEEEEECCcccc--c-C--CCCCEEEEEEcCCCcEE
Confidence 99999997653 2 23578899999875 2 1 24689999999877543
No 18
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*
Probab=99.61 E-value=7.4e-15 Score=143.16 Aligned_cols=256 Identities=14% Similarity=0.173 Sum_probs=132.2
Q ss_pred CCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCc
Q 013207 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPV 89 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~ 89 (447)
.+.|||+++||+|++.... ..........+.+.+.+.+.++|+||++||++.........-.+..+.+.++.
T Consensus 4 ~~~~~~~~isD~h~~~~~~--~~~~~~~~~~~~l~~~~~~~~~d~vv~~GD~~~~~g~~~~~~~~~~~~~~~~~------ 75 (313)
T 1ute_A 4 TPILRFVAVGDWGGVPNAP--FHTAREMANAKAIATTVKTLGADFILSLGDNFYFTGVHDAKDKRFQETFEDVF------ 75 (313)
T ss_dssp CCCEEEEEECSCCCCSSTT--SSCHHHHHHHHHHHHHHHHHCCSEEEECSCCSTTTCCSSTTCTHHHHHTTTTS------
T ss_pred CCceEEEEEcccCCCCCcc--ccCchHHHHHHHHHHHHHhcCCCEEEECCCccCcCCCCCcchHHHHHHHHHHc------
Confidence 4679999999999985321 00111223344555556778999999999997643211100001222222210
Q ss_pred ceeeechhhhcccccccccccCCCCCCC-CCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcceeEEE
Q 013207 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNV-GLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVY 168 (447)
Q Consensus 90 ~~~~lsd~~~~f~~~~~~~n~~d~~~~~-~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~~ 168 (447)
.. ... ++|+++|+||||...... ..........-. .+.. ..+ ...
T Consensus 76 ----------------~~-------~~l~~~p~~~v~GNHD~~~~~~--~~~~~~~~~~~~-~~~~-----~~y-~~~-- 121 (313)
T 1ute_A 76 ----------------SD-------PSLRNVPWHVLAGNHDHLGNVS--AQIAYSKISKRW-NFPS-----PYY-RLR-- 121 (313)
T ss_dssp ----------------CS-------GGGTTCCEEECCCHHHHHSCHH--HHHHGGGTSTTE-ECCS-----SSE-EEE--
T ss_pred ----------------Cc-------hhhcCCCEEEECCCCccCCCcc--ccccccccCCCc-cCcc-----cce-EEE--
Confidence 00 013 689999999999854321 111111100000 0110 000 000
Q ss_pred EEEEecCCeeEEEEecCCCC-----------------hHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccC
Q 013207 169 PILIRKGSTAVALYGLGNIR-----------------DERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKT 231 (447)
Q Consensus 169 Pi~l~~g~~~vaiyGl~~~~-----------------~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~ 231 (447)
+.+..++..+.++++.... ...+ .. +.++|++...... .....|+++|++....
T Consensus 122 -~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~----~~-~q~~wL~~~L~~~---~~~~~iv~~H~p~~~~ 192 (313)
T 1ute_A 122 -FKIPRSNVSVAIFMLDTVTLCGNSDDFVSQQPERPRNLAL----AR-TQLAWIKKQLAAA---KEDYVLVAGHYPVWSI 192 (313)
T ss_dssp -EECTTSSCEEEEEECCHHHHHCCGGGSTTCSCCSCSCHHH----HH-HHHHHHHHHHHHC---CCSEEEEECSSCSSCC
T ss_pred -EecCCCCceEEEEEEEChHHhCcCccccccccCCccccch----HH-HHHHHHHHHHHhC---CCCeEEEEECCCCccC
Confidence 0011112356666664210 0111 11 4567776654432 2467899999988653
Q ss_pred CCCC---ccccc----ccccCCcEEEeccccCcccCCcccCCCCceEeccCCccccc---------------cccCc-cC
Q 013207 232 NPKN---AINEH----FLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATS---------------LIEGE-SK 288 (447)
Q Consensus 232 ~~~~---~i~~~----~~~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s---------------~~e~E-~~ 288 (447)
+... ...+. +...++|+|++||+|..+.. . ...+...+.+||..... |..++ ..
T Consensus 193 ~~~~~~~~~~~~l~~~l~~~~v~~~l~GH~H~~~~~--~-~~~g~~~i~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (313)
T 1ute_A 193 AEHGPTHCLVKQLLPLLTTHKVTAYLCGHDHNLQYL--Q-DENGLGFVLSGAGNFMDPSKKHLRKVPNGYLRFHFGAENS 269 (313)
T ss_dssp SSSCCCHHHHHHTHHHHHHTTCSEEEECSSSSEEEE--E-CTTCCEEEEECBSSCCCCCCTTGGGSCTTCEEEEECCTTS
T ss_pred CCCCCcHHHHHHHHHHHHHcCCcEEEECChhhhhhc--c-CCCCceEEEECCCcCcCccccccccCCCcccceeccCcCC
Confidence 3211 11111 22346999999999975432 1 12345667788765321 11111 12
Q ss_pred CceEEEEEEeCCeeEEEEEECCCCCcEEEEEE
Q 013207 289 PKHVLLLEIKENQYRPTKIPLTSVRPFEYTEI 320 (447)
Q Consensus 289 ~Kg~~lvei~~~~~~~~~i~L~~~Rpf~~~~i 320 (447)
..||.+++++++.++++++.+. -+++...++
T Consensus 270 ~~gy~~l~v~~~~~~~~~~~~~-g~~~~~~~l 300 (313)
T 1ute_A 270 LGGFAYVEITPKEMSVTYIEAS-GKSLFKTKL 300 (313)
T ss_dssp CCEEEEEEECSSCEEEEEEETT-SCEEEEEEE
T ss_pred CCceEEEEEEcCEEEEEEEcCC-CcEEEEEEe
Confidence 3699999999888999999985 455544433
No 19
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=99.55 E-value=1.7e-13 Score=128.14 Aligned_cols=180 Identities=17% Similarity=0.241 Sum_probs=109.9
Q ss_pred CCCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCH--H--HHHHHHHHHHHhhc
Q 013207 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSR--S--TLVKAIEILRRHCL 84 (447)
Q Consensus 9 ~~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~--~--~l~~~~~~L~~l~~ 84 (447)
...||||+++||+|.+ +..|+++++.+.+.++|+|+++||+++....+. . ...+++++|+++
T Consensus 22 ~~~mmki~~iSD~H~~------------~~~l~~~l~~~~~~~~d~vi~~GDl~~~g~~~~~~~~~~~~~~~~~l~~~-- 87 (208)
T 1su1_A 22 SNAMMKLMFASDIHGS------------LPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEV-- 87 (208)
T ss_dssp ---CCEEEEECCCTTB------------HHHHHHHHHHHHHHTCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHHTT--
T ss_pred ccccEEEEEEEcCCCC------------HHHHHHHHHHHHhcCCCEEEECCCccccCcccccccccCHHHHHHHHHhc--
Confidence 3457999999999975 457889999998889999999999998653210 0 123355666642
Q ss_pred CCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcce
Q 013207 85 NDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGE 164 (447)
Q Consensus 85 ~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~ 164 (447)
+.|+++|.||||... ..++.. |... . .
T Consensus 88 ---------------------------------~~~v~~V~GNHD~~~-------~~~~~~------~~~~----~---~ 114 (208)
T 1su1_A 88 ---------------------------------AHKVIAVRGNCDSEV-------DQMLLH------FPIT----A---P 114 (208)
T ss_dssp ---------------------------------GGGEEECCCTTCCHH-------HHHHSS------SCCC----C---S
T ss_pred ---------------------------------CCceEEEECCCchHH-------HHhhhh------cccc----C---c
Confidence 468999999999732 111111 0000 0 0
Q ss_pred eEEEEEEEecCCeeEEEEecCCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCCCccccccccc
Q 013207 165 ITVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPR 244 (447)
Q Consensus 165 i~~~Pi~l~~g~~~vaiyGl~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~i~~~~~~~ 244 (447)
.. ++. -+..+|+++|+..... ..+. . +.
T Consensus 115 --------------~~-----------------------~~~---------~~g~~i~l~Hg~~~~~---~~l~-~-~~- 142 (208)
T 1su1_A 115 --------------WQ-----------------------QVL---------LEKQRLFLTHGHLFGP---ENLP-A-LN- 142 (208)
T ss_dssp --------------EE-----------------------EEE---------CSSCEEEEECSSSSBT---TBCC-C-CC-
T ss_pred --------------eE-----------------------EEE---------ECCcEEEEECCCCCCc---chhh-h-hc-
Confidence 00 000 0235899999876421 1111 1 12
Q ss_pred CCcEEEeccccCcccCCcccCCCCceEeccCCccccccccCccCCceEEEEEEeCCeeEEEEEECCCCCcEEEEEE
Q 013207 245 FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEI 320 (447)
Q Consensus 245 ~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~Kg~~lvei~~~~~~~~~i~L~~~Rpf~~~~i 320 (447)
..|++++||+|.+... . .++..+++|||..... . ..+.++++++. + +++.+.+.. .++....+
T Consensus 143 ~~d~vi~GHtH~~~~~--~--~~~~~~iNpGs~~~pr--~--~~~~sy~il~~--~--~~~~~~~~~-~~~~~~~~ 205 (208)
T 1su1_A 143 QNDVLVYGHTHLPVAE--Q--RGEIFHFNPGSVSIPK--G--GNPASYGMLDN--D--VLSVIALND-QSIIAQVA 205 (208)
T ss_dssp TTCEEECCSSCCCEEE--E--ETTEEEEECCCSSCCC--T--TCCCEEEEEET--T--EEEEEETTT-CCEEEEEE
T ss_pred CCCEEEECCcccCccE--E--eCCEEEEECCCCcCCC--C--CCCCEEEEEEC--C--eEEEEEeCC-CEEEEEec
Confidence 3499999999997642 2 2357889999976322 1 23578999984 3 466677753 35555443
No 20
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=99.52 E-value=3.7e-14 Score=128.84 Aligned_cols=89 Identities=12% Similarity=0.057 Sum_probs=58.2
Q ss_pred eeEEEeecccccCCC-CCcccccccccCCcEEEeccccCcccCCcccCCCCceEeccCCccccccccCccCC-ceEEEEE
Q 013207 219 FNILVLHQNRVKTNP-KNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKP-KHVLLLE 296 (447)
Q Consensus 219 ~~Ill~H~~~~~~~~-~~~i~~~~~~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~E~~~-Kg~~lve 296 (447)
.+|+++|++...... ...+.+.+...++|++++||+|..... .. ++..+++|||..... . ..+ .++++++
T Consensus 78 ~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~d~vi~GHtH~~~~~--~~--~~~~~inpGs~~~~~--~--~~~~~~y~il~ 149 (176)
T 3ck2_A 78 TKIIQTHGHLFDINFNFQKLDYWAQEEEAAICLYGHLHVPSAW--LE--GKILFLNPGSISQPR--G--TIRECLYARVE 149 (176)
T ss_dssp EEEEEECSGGGTTTTCSHHHHHHHHHTTCSEEECCSSCCEEEE--EE--TTEEEEEECCSSSCC--T--TCCSCCEEEEE
T ss_pred eEEEEECCCccCCCCCHHHHHHHHHhcCCCEEEECCcCCCCcE--EE--CCEEEEECCCCCcCC--C--CCCCCeEEEEE
Confidence 578888887643211 111111122356899999999997642 22 346889999976332 1 233 7999999
Q ss_pred EeCCeeEEEEEECCCCCcEE
Q 013207 297 IKENQYRPTKIPLTSVRPFE 316 (447)
Q Consensus 297 i~~~~~~~~~i~L~~~Rpf~ 316 (447)
+++++++++.+++. .+++.
T Consensus 150 ~~~~~~~v~~~~~~-~~~~~ 168 (176)
T 3ck2_A 150 IDDSYFKVDFLTRD-HEVYP 168 (176)
T ss_dssp ECSSEEEEEEECTT-SCBCT
T ss_pred EcCCEEEEEEEEEC-CEEcc
Confidence 99888999999986 34444
No 21
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=99.50 E-value=2.8e-13 Score=131.75 Aligned_cols=208 Identities=16% Similarity=0.163 Sum_probs=115.9
Q ss_pred CCCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCC
Q 013207 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRP 88 (447)
Q Consensus 9 ~~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~ 88 (447)
..++.||+++||+|.. +.+|+++++.+.+.++|.|+++||+++....+.+ ++++|+++
T Consensus 8 ~~~~~~i~~iSDiHg~------------~~~l~~vl~~~~~~~~D~ii~~GDlv~~g~~~~~----~~~~l~~~------ 65 (270)
T 3qfm_A 8 HMDMTKIALLSDIHGN------------TTALEAVLADARQLGVDEYWLLGDILMPGTGRRR----ILDLLDQL------ 65 (270)
T ss_dssp ---CEEEEEECCCTTC------------HHHHHHHHHHHHHTTCCEEEECSCCSSSSSCSHH----HHHHHHTS------
T ss_pred cccccEEEEEecCCCC------------HHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCHHH----HHHHHHcc------
Confidence 4678999999999943 5789999999999999999999999997643333 45666642
Q ss_pred cceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhc-CCceEEecceeccCCCcceeEE
Q 013207 89 VQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSA-CNLVNYFGKMVLGGSGVGEITV 167 (447)
Q Consensus 89 ~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~-~g~v~~fg~~~l~~~~~~~i~~ 167 (447)
.|+++|.||||.... ..+.. .+ |... ...
T Consensus 66 ------------------------------~~~~~v~GNhD~~~~-------~~~~~~~~----~~~~-------~~~-- 95 (270)
T 3qfm_A 66 ------------------------------PITARVLGNWEDSLW-------HGVRKELD----STRP-------SQR-- 95 (270)
T ss_dssp ------------------------------CEEEECCCHHHHHHH-------HHHTTCSC----TTSH-------HHH--
T ss_pred ------------------------------CCEEEEcCChHHHHH-------HhhccccC----CCcH-------HHH--
Confidence 279999999997421 11110 01 0000 000
Q ss_pred EEEEEecCCeeEEEEecCCCChHHHHhhhcChhHHhhccchhhhhccccCceeEEEeecccccCCCCCcc---------c
Q 013207 168 YPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAI---------N 238 (447)
Q Consensus 168 ~Pi~l~~g~~~vaiyGl~~~~~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~i---------~ 238 (447)
.+. ...-|-...+.+ +.++|++.......-.-+...|+++|+.....- ..++ .
T Consensus 96 ---~~~----~~~~~~~~~L~~----------~~~~~L~~LP~~~~~~~~g~~i~lvHg~p~~~~-~~~~~~~~~~~~l~ 157 (270)
T 3qfm_A 96 ---YLL----RQCQYVLEEISL----------EEIEVLHNQPLQIHRQFGDLTVGISHHLPDKNW-GRELIHTGKQEEFD 157 (270)
T ss_dssp ---HHH----HHHHHHHTTSCH----------HHHHHHHSCCSEEEEEETTEEEEEESSBTTBSS-SSTTSTTCCHHHHH
T ss_pred ---HHH----HHHHHHHHHcCH----------HHHHHHHhCCCceEEEECCcEEEEEECCCCCCC-CceecCCCcHHHHH
Confidence 000 000000011112 233444321110000114568999997643210 0111 1
Q ss_pred ccccccCCcEEEeccccCcccCCcccCCCCceEeccCCccccccccC---ccCCceEEEEEEeCCe-eEEEEEEC
Q 013207 239 EHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEG---ESKPKHVLLLEIKENQ-YRPTKIPL 309 (447)
Q Consensus 239 ~~~~~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~~e~---E~~~Kg~~lvei~~~~-~~~~~i~L 309 (447)
+.+...++|++++||+|.+... .. .++..+++|||...-..... .....+|+|+++++++ ++++++.+
T Consensus 158 ~~~~~~~~d~~i~GHtH~~~~~--~~-~~~~~~iNpGSvg~pr~~~~~~~~~~~asyaild~~~~~~~~v~~~rv 229 (270)
T 3qfm_A 158 RLVTHPPCDIAVYGHIHQQLLR--YG-TGGQLIVNPGSIGQPFFLDAQLRKDLRAQYMILEFDDKGLVDMDFRRV 229 (270)
T ss_dssp HTTTTTTCSEEECCSSCSEEEE--EC-TTSCEEEEECCSSSCCCSSTTGGGCCCEEEEEEEEETTEEEEEEEEEE
T ss_pred HHhcccCCCEEEECCcCchHhe--ec-cCCEEEEECCCccCCCCCCccccCCCCCEEEEEEecCCCceEEEEEEe
Confidence 1122346899999999986542 11 23568999999765432210 0225699999999876 56776654
No 22
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=99.46 E-value=1.2e-13 Score=131.75 Aligned_cols=71 Identities=18% Similarity=0.166 Sum_probs=53.0
Q ss_pred ceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHH---Hc--CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCC
Q 013207 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE---QK--EVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLND 86 (447)
Q Consensus 12 ~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~---~~--~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~ 86 (447)
||||+++||+|.. +.+|+++++.+. +. ++|+|+++||+++... ... .+++.|+++.
T Consensus 1 mm~i~~isD~H~~------------~~~l~~~l~~~~~~~~~~~~~d~ii~~GD~~~~g~-~~~---~~~~~l~~l~--- 61 (252)
T 1nnw_A 1 MVYVAVLANIAGN------------LPALTAALSRIEEMREEGYEIEKYYILGNIVGLFP-YPK---EVIEVIKDLT--- 61 (252)
T ss_dssp -CEEEEEECCTTC------------HHHHHHHHHHHHHHHHTTCCEEEEEEESCSSSSSS-CHH---HHHHHHHHHH---
T ss_pred CcEEEEEeecCCC------------HHHHHHHHHHHHhhhhccCCCCEEEEeCccCCCCC-CHH---HHHHHHHhhH---
Confidence 6999999999953 456788888877 77 8999999999998763 332 2455666542
Q ss_pred CCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCC
Q 013207 87 RPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (447)
Q Consensus 87 ~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~ 131 (447)
...|+++|+||||..
T Consensus 62 ------------------------------~~~~~~~v~GNhD~~ 76 (252)
T 1nnw_A 62 ------------------------------KKENVKIIRGKYDQI 76 (252)
T ss_dssp ------------------------------HHSCEEEECCHHHHH
T ss_pred ------------------------------hhcCeeEEecchHHH
Confidence 125799999999974
No 23
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=99.40 E-value=1e-12 Score=129.10 Aligned_cols=183 Identities=15% Similarity=0.065 Sum_probs=103.9
Q ss_pred CCCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCC
Q 013207 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRP 88 (447)
Q Consensus 9 ~~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~ 88 (447)
..+.|||+++||+|..... + .-.++|+||++|||++... ...+..++++|+++
T Consensus 56 ~~~~mri~~iSD~H~~~~~------------l-------~i~~~D~vi~aGDl~~~g~--~~e~~~~~~~L~~l------ 108 (296)
T 3rl5_A 56 PAGHTRFVCISDTRSRTDG------------I-------QMPYGDILLHTGDFTELGL--PSEVKKFNDWLGNL------ 108 (296)
T ss_dssp CTTEEEEEEEBCCTTCCTT------------C-------CCCSCSEEEECSCCSSSCC--HHHHHHHHHHHHTS------
T ss_pred CCCCeEEEEEeeCCCCcch------------h-------ccCCCCEEEECCcccCCCC--HHHHHHHHHHHHhC------
Confidence 4567999999999987531 1 1147999999999999874 44566677777753
Q ss_pred cceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhh-----------------------h-
Q 013207 89 VQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDIL-----------------------S- 144 (447)
Q Consensus 89 ~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L-----------------------~- 144 (447)
...++++|+||||...... ..+.+ +
T Consensus 109 ----------------------------~~~~v~~V~GNHD~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (296)
T 3rl5_A 109 ----------------------------PYEYKIVIAGNHELTFDKE---FMADLVKQDYYRFPSVSKLKPEDFDNVQSL 157 (296)
T ss_dssp ----------------------------CCSEEEECCCTTCGGGCHH---HHHHHTTSCGGGSHHHHTCCHHHHTTTGGG
T ss_pred ----------------------------CCCeEEEEcCCcccccchh---hhhhhhcccccccccccccccchhhhHhhh
Confidence 1246999999999853321 11111 0
Q ss_pred cCCceEEecceeccCCCcceeEEEEEEEecCCeeEEEEecCCCChHHHHhhhcCh--h-HHhhccchhhhhccccCceeE
Q 013207 145 ACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERLNRMFQTP--H-AVQWMRPEAQEECQVSDWFNI 221 (447)
Q Consensus 145 ~~g~v~~fg~~~l~~~~~~~i~~~Pi~l~~g~~~vaiyGl~~~~~~~l~~~~~~~--~-~v~~l~p~~~~~~~~~~~~~I 221 (447)
..|.+++-++ -+.+. .+.|||.++..... ...|+.. . ..+... . .+....|
T Consensus 158 ~~~~~~L~~~--------------~~~i~----Gl~i~Gsp~tP~~~-~~~f~~~~~~~~~~~~~-----~--ip~~~dI 211 (296)
T 3rl5_A 158 LTNSIYLQDS--------------EVTVK----GFRIYGAPWTPWFN-GWGFNLPRGQSLLDKWN-----L--IPEGTDI 211 (296)
T ss_dssp CTTSEECSSE--------------EEEET----TEEEEEECCBCC---CCTTBCCTTHHHHHHHT-----T--SCTTCSE
T ss_pred cCCeEEecCC--------------cEEEC----CEEEEEecCCCCCC-CcCCCcchHHHHHHHHh-----h--CCCCCeE
Confidence 0122211111 12231 37889987643211 1112210 0 011110 0 1245689
Q ss_pred EEeecccccCCCC----------Cccccccc-ccCCcEEEeccccCcccCCcccCCCCceEeccCCcc
Q 013207 222 LVLHQNRVKTNPK----------NAINEHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSV 278 (447)
Q Consensus 222 ll~H~~~~~~~~~----------~~i~~~~~-~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~ 278 (447)
++.|++..+.... ..+-+.+. ....+|+++||+|..... .+ .++..+++|||..
T Consensus 212 LvTH~PP~g~~D~~~~~~~~~G~~~L~~~i~~~~~p~l~v~GH~H~~~~~-~~--~g~t~vvNpGs~~ 276 (296)
T 3rl5_A 212 LMTHGPPLGFRDWVPKELQRVGCVELLNTVQRRVRPKLHVFGGIHEGYGT-MT--DGYTTYINASTCT 276 (296)
T ss_dssp EEESSCBTTSSCEEGGGTEECSBHHHHHHHHHTTCCSEEEECSCGGGCEE-EE--CSSCEEEECBCSC
T ss_pred EEECCCccccccccccccCcCChHHHHHHHHHhcCCCEEEECCccCCCce-EE--ECCEEEEECCcCC
Confidence 9999998664210 11112221 356899999999997531 11 2357899999863
No 24
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=99.39 E-value=3e-13 Score=129.34 Aligned_cols=54 Identities=30% Similarity=0.399 Sum_probs=41.6
Q ss_pred CceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHh
Q 013207 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (447)
Q Consensus 11 ~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l 82 (447)
++|||+++||+|.. +.+|+++++.+. ++|.|+++||+++... ... .+++.|+++
T Consensus 2 ~~mri~~isDiHg~------------~~~l~~~l~~~~--~~d~ii~~GDl~~~g~-~~~---~~~~~l~~~ 55 (246)
T 3rqz_A 2 NAMRILIISDVHAN------------LVALEAVLSDAG--RVDDIWSLGDIVGYGP-RPR---ECVELVRVL 55 (246)
T ss_dssp CCCCEEEECCCTTC------------HHHHHHHHHHHC--SCSEEEECSCCSSSSS-CHH---HHHHHHHHH
T ss_pred CCcEEEEEeecCCC------------HHHHHHHHHhcc--CCCEEEECCCcCCCCC-CHH---HHHHHHHhc
Confidence 57999999999943 467788888776 9999999999999763 332 245667654
No 25
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}
Probab=99.39 E-value=3.4e-12 Score=128.27 Aligned_cols=265 Identities=12% Similarity=0.090 Sum_probs=137.4
Q ss_pred CceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcc
Q 013207 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (447)
Q Consensus 11 ~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~ 90 (447)
..+||+.++|||.|.. .+....+.+.+.+.+.++|+||++||+|+....+... .+..+.+.+.
T Consensus 2 ~~l~f~~igD~g~g~~--------~q~~va~~m~~~~~~~~pd~vl~~GD~~y~G~~~~~d-~~~~~~f~~~-------- 64 (342)
T 3tgh_A 2 CQLRFASLGDWGKDTK--------GQILNAKYFKQFIKNERVTFIVSPGSNFIDGVKGLND-PAWKNLYEDV-------- 64 (342)
T ss_dssp CCEEEEECCSCBSCCH--------HHHHHHHHHHHHHHHTTCCEEEECSCSBTTCCCSTTC-THHHHHTTTT--------
T ss_pred ceEEEEEEecCCCCCc--------hHHHHHHHHHHHHhhcCCCEEEECCCcccCCCCcCcc-HHHHHHHHHH--------
Confidence 3589999999998742 3456677888889999999999999999875322211 0112222221
Q ss_pred eeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhh----cCC----ce-EE----ecceec
Q 013207 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILS----ACN----LV-NY----FGKMVL 157 (447)
Q Consensus 91 ~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~----~~g----~v-~~----fg~~~l 157 (447)
+..+ +...++|+++|+||||...... ..++.-. ... +- .+ ..+..+
T Consensus 65 --------------~~~~-----~~~~~~P~~~vlGNHD~~~~~~--aq~~~~~~~~~~~~~~~~~~~~~~~~~~~rw~~ 123 (342)
T 3tgh_A 65 --------------YSEE-----KGDMYMPFFTVLGTRDWTGNYN--AQLLKGQGIYIEKNGETSIEKDADATNYPKWIM 123 (342)
T ss_dssp --------------SCCG-----GGTTCSEEEECCCHHHHTSCHH--HHHHHHHC---------------CCCSSCEEEC
T ss_pred --------------hhhh-----hhhhCCCEEEeCCCCccCCCch--HhhhhhhcccccccccccccccccccCCCCccC
Confidence 1100 0135799999999999875421 1111100 000 00 00 001111
Q ss_pred cCCCcc---eeEE--EEEEEecC--CeeEEEEecCCCC-------hHHHHhhhcChhHHhhccchhhhhccccCceeEEE
Q 013207 158 GGSGVG---EITV--YPILIRKG--STAVALYGLGNIR-------DERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILV 223 (447)
Q Consensus 158 ~~~~~~---~i~~--~Pi~l~~g--~~~vaiyGl~~~~-------~~~l~~~~~~~~~v~~l~p~~~~~~~~~~~~~Ill 223 (447)
.+..+. .+.+ .|.....| +..+.++.+.... ...-.+.+. ++.+||+..... ....|++
T Consensus 124 P~~yY~~~~~f~~~~~~~~~~~g~~~~~v~fi~LDT~~l~~~~~~~~~~~~~~~--~Ql~WLe~~L~~-----~~~~IV~ 196 (342)
T 3tgh_A 124 PNYWYHYFTHFTVSSGPSIVKTGHKDLAAAFIFIDTWVLSSNFPYKKIHEKAWN--DLKSQLSVAKKI-----ADFIIVV 196 (342)
T ss_dssp SSSSEEEEEEEEEC---------CEEEEEEEEECCTTTTSTTCSCHHHHHHHHH--HHHHHHHHHHHH-----CSEEEEE
T ss_pred CcceEEEEEEeeccccccccccCCCCceEEEEEEeCcccccCCcccccchHHHH--HHHHHHHHhhcc-----CCcEEEE
Confidence 110000 0000 01111122 1346777765321 011111122 567888766521 3578999
Q ss_pred eecccccCCCC---Cccccc----ccccCCcEEEeccccCcccCCcccCCCCceEeccCCcccccc---ccC-----ccC
Q 013207 224 LHQNRVKTNPK---NAINEH----FLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSL---IEG-----ESK 288 (447)
Q Consensus 224 ~H~~~~~~~~~---~~i~~~----~~~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~~~s~---~e~-----E~~ 288 (447)
.|+++...+.. ..+.+. +...++|++++||.|..+.. .. .+...+-.|+...... ... ...
T Consensus 197 ~HhP~~~~~~~~~~~~l~~~l~~ll~~~~VdlvlsGH~H~~~~~--~~--~g~~~iv~Ga~g~~~~~~~~~~~~s~f~~~ 272 (342)
T 3tgh_A 197 GDQPIYSSGYSRGSSYLAYYLLPLLKDAEVDLYISGHDNNMEVI--ED--NDMAHITCGSGSMSQGKSGMKNSKSLFFSS 272 (342)
T ss_dssp CSSCSSCSSTTCCCHHHHHHTHHHHHHTTCCEEEECSSSSEEEE--EE--TTEEEEEECCSSCCCCCCSSCCTTEEEEEC
T ss_pred ECCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCcceeEE--ee--CCcEEEEeCccccccccCCCCCCcceeecC
Confidence 99998654321 111111 22357999999999986532 11 2233334444321110 000 025
Q ss_pred CceEEEEEEeCCeeEEEEEECCCCCcEEEEEEEecc
Q 013207 289 PKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIILKD 324 (447)
Q Consensus 289 ~Kg~~lvei~~~~~~~~~i~L~~~Rpf~~~~i~l~~ 324 (447)
+.|+.+++++++.++++.+....-+.+-..++.-..
T Consensus 273 ~~Gf~~l~v~~~~l~~~~~~~~~G~vld~~~i~k~~ 308 (342)
T 3tgh_A 273 DIGFCVHELSNNGIVTKFVSSKKGEVIYTHKLNIKK 308 (342)
T ss_dssp SSEEEEEEEETTEEEEEEEETTTTEEEEEEEEECCC
T ss_pred CCcEEEEEEECCEEEEEEEECCCCcEEEEEEEECCC
Confidence 679999999999999999984445655555554433
No 26
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=99.30 E-value=3.9e-12 Score=117.21 Aligned_cols=81 Identities=15% Similarity=0.054 Sum_probs=54.8
Q ss_pred ceEEEEEcCCCCCCCCCcccc-cccHHHHHHHHHHHHHH--cCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCC
Q 013207 12 TVRILVATDCHLGYMEKDEIR-RHDSFEAFEEICSIAEQ--KEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRP 88 (447)
Q Consensus 12 ~mrILh~SD~HLG~~~~~~~r-~~d~~~~feeil~~a~~--~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~ 88 (447)
.|||+++||+|+|.......+ ..+....++.+++.+.+ .++|+|+++||+++.. +... .++++|+++
T Consensus 1 ~~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vi~~GDl~~~~-~~~~---~~~~~l~~l------ 70 (195)
T 1xm7_A 1 NAMMYFISDTHFYHENIINLNPEVRFKGFEIVILTNLLKVLKPEDTLYHLGDFTWHF-NDKN---EYLRIWKAL------ 70 (195)
T ss_dssp CCCEEEEBCCCBTCTTHHHHSTTTCCTTHHHHHHHHHHTTCCTTCEEEECSCCBSCS-CCTT---SHHHHHHHS------
T ss_pred CcEEEEEeccccCCCccccccCCCCHHHHHHHHHHHHHHhCCCCCEEEECCCCCCCc-hhHH---HHHHHHHHC------
Confidence 389999999999865311000 01112345667777776 4899999999999875 3322 245667753
Q ss_pred cceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCC
Q 013207 89 VQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (447)
Q Consensus 89 ~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~ 131 (447)
+.|+++|+||||..
T Consensus 71 -----------------------------~~~~~~v~GNhD~~ 84 (195)
T 1xm7_A 71 -----------------------------PGRKILVMGNHDKD 84 (195)
T ss_dssp -----------------------------SSEEEEECCTTCCC
T ss_pred -----------------------------CCCEEEEeCCCCCc
Confidence 35899999999974
No 27
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Probab=99.14 E-value=1.3e-09 Score=112.22 Aligned_cols=77 Identities=21% Similarity=0.053 Sum_probs=51.6
Q ss_pred CCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCCC---HHHHHHHHHHHHHhhc
Q 013207 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPS---RSTLVKAIEILRRHCL 84 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~--~vD~VliaGDLfd~~~ps---~~~l~~~~~~L~~l~~ 84 (447)
...+||+++||+|.+. ....+++ .+.+. ++|+||++||++...... ........+.++.+
T Consensus 124 ~~~~~f~~~gD~~~~~---------~~~~~l~----~i~~~~~~~D~vl~~GD~~y~~~~~~~~~~~~~~~~~~l~~l-- 188 (426)
T 1xzw_A 124 DVPYVFGLIGDIGQTH---------DSNTTLT----HYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSERS-- 188 (426)
T ss_dssp TCCEEEEEECSCTTBH---------HHHHHHH----HHHHCTTCCSEEEECSCCCCGGGSGGGCTHHHHHHHHHHHHH--
T ss_pred CCCeEEEEEEeCCCCC---------chHHHHH----HHHhCCCCCCEEEeCCChhhcccCCcccchHHHHHHHHHHHH--
Confidence 5679999999999863 1223333 33444 899999999998754321 22223334455543
Q ss_pred CCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCC
Q 013207 85 NDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (447)
Q Consensus 85 ~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~ 132 (447)
...+|++++.||||...
T Consensus 189 -------------------------------~~~~P~~~v~GNHD~~~ 205 (426)
T 1xzw_A 189 -------------------------------VAYQPWIWTAGNHEIDY 205 (426)
T ss_dssp -------------------------------HTTSCEECCCCGGGCCC
T ss_pred -------------------------------HhcCCEEEecccccccc
Confidence 23789999999999864
No 28
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*
Probab=99.11 E-value=1.3e-09 Score=112.11 Aligned_cols=77 Identities=18% Similarity=0.029 Sum_probs=51.2
Q ss_pred CCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCCC---HHHHHHHHHHHHHhhc
Q 013207 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPS---RSTLVKAIEILRRHCL 84 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~--~vD~VliaGDLfd~~~ps---~~~l~~~~~~L~~l~~ 84 (447)
...|||+++||+|.+.. ... +++.+.+. ++|+||++||+++..... ........+.++.+
T Consensus 117 ~~~~~f~~igD~~~~~~---------~~~----~l~~~~~~~~~~D~vl~~GDl~y~~~~~~~~~~~~~~~~~~l~~~-- 181 (424)
T 2qfp_A 117 DVPYTFGLIGDLGQSFD---------SNT----TLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERS-- 181 (424)
T ss_dssp TCCEEEEEECSCTTBHH---------HHH----HHHHHHTCSSCCCEEEECSCCSCGGGSGGGCTHHHHHHHHHHHHH--
T ss_pred CCCeEEEEEEeCCCCCC---------hHH----HHHHHHhCCCCCCEEEEcCccccccccccccchHHHHHHHHHHHH--
Confidence 46799999999998741 122 33444444 899999999999865321 12222334444443
Q ss_pred CCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCC
Q 013207 85 NDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (447)
Q Consensus 85 ~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~ 132 (447)
...+|++++.||||...
T Consensus 182 -------------------------------~~~~P~~~v~GNHD~~~ 198 (424)
T 2qfp_A 182 -------------------------------VAYQPWIWTAGNHEIEF 198 (424)
T ss_dssp -------------------------------HTTSCEEECCCHHHHCC
T ss_pred -------------------------------HhcCCeEeecCCccccc
Confidence 23689999999999753
No 29
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A
Probab=98.90 E-value=1e-08 Score=109.54 Aligned_cols=186 Identities=17% Similarity=0.188 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHc--C--CC-EEEEcCCCCCCCCCCHHHH---HHHHHHHHHhhcCCCCcceeeechhhhcccccccccc
Q 013207 38 EAFEEICSIAEQK--E--VD-FVLLGGDLFHENKPSRSTL---VKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVN 109 (447)
Q Consensus 38 ~~feeil~~a~~~--~--vD-~VliaGDLfd~~~ps~~~l---~~~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n 109 (447)
..+..+++.++++ + +| ++|.+||+|+... .... ..++++|+.+
T Consensus 105 arla~~v~~~r~~~~~~gpd~Lll~~GD~~~gs~--~~~~~~g~~~~~~ln~l--------------------------- 155 (562)
T 2wdc_A 105 GALTALIRDQKARVEAEGGKALVLDGGDTWTNSG--LSLLTRGEAVVRWQNLV--------------------------- 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCCSSSSH--HHHHHTTHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHhhhhcCCCCEEEEeCCCCCCcch--hhhhhCCHHHHHHHHhh---------------------------
Confidence 4556777777765 5 89 8999999998652 1111 2345666653
Q ss_pred cCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcceeEEEEE-EEecCCeeEEEEecCCCC
Q 013207 110 YEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPI-LIRKGSTAVALYGLGNIR 188 (447)
Q Consensus 110 ~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~~Pi-~l~~g~~~vaiyGl~~~~ 188 (447)
+.+++ + ||||...+.. .....++.+++ .+++..... ...+.-.+.|. .++.++.+|++.|+-...
T Consensus 156 --------g~d~~-~-GNHEfd~G~~--~l~~~l~~~~~-p~L~aNv~~-~~~~~~~~~py~i~e~~G~kIgiiG~~~~~ 221 (562)
T 2wdc_A 156 --------GVDHM-V-SHWEWTLGRE--RVEELLGLFRG-EFLSYNIVD-DLFGDPLFPAYRIHRVGPYALAVVGASYPY 221 (562)
T ss_dssp --------TCCEE-C-CSGGGGGCHH--HHHHHHHHCCS-EECCSSCEE-TTTCCBSSCSEEEEEETTEEEEEEEECCTT
T ss_pred --------CCcEE-e-cchhcccCHH--HHHHHHHhCCC-CEEEEEEEe-cCCCCcccCCeEEEEECCeEEEEEeeccCc
Confidence 55664 6 9999754432 23345555553 222211000 00000002232 345677899999974321
Q ss_pred hHHHH-------hhhcCh-hHHhhccchhhhhccccCceeEEEeecccccCCCCCcccccccccCCcEEEeccccCcccC
Q 013207 189 DERLN-------RMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFVVWGHEHECLID 260 (447)
Q Consensus 189 ~~~l~-------~~~~~~-~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~i~~~~~~~~~D~v~~GH~H~~~i~ 260 (447)
-.... -.|... +.++...+...+ ....+.|++.|..... ...+... + .++|+++.||.|.....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~d~iIvLsH~g~~~---d~~la~~-~-~giDlIlgGHtH~~~~~ 293 (562)
T 2wdc_A 222 VKVSHPESFTEGLSFALDERRLQEAVDKARA---EGANAVVLLSHNGMQL---DAALAER-I-RGIDLILSGHTHDLTPR 293 (562)
T ss_dssp HHHHSCGGGGTTEECCCCHHHHHHHHHHHHH---TTCSEEEEEECSCHHH---HHHHHTT-S-SSCCEEEECSSCCCCSS
T ss_pred ccccccccccCCcEEeCHHHHHHHHHHHHHH---CCCCEEEEEeCCCCcc---hHHHHhc-C-CCCcEEEeCCCCCCCcc
Confidence 11000 001100 111111111111 1245889999986421 0011111 2 47999999999997754
Q ss_pred CcccCCCCceEeccCC
Q 013207 261 PQEVPGMGFHLTQPGS 276 (447)
Q Consensus 261 pq~~~~~~~~i~ypGS 276 (447)
|..+ ++..++++|+
T Consensus 294 ~~~~--~~t~vvqag~ 307 (562)
T 2wdc_A 294 PWRV--GKTWIVAGSA 307 (562)
T ss_dssp CEEE--TTEEEEECCS
T ss_pred CEEE--CCEEEEecCc
Confidence 4333 2467778875
No 30
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A*
Probab=98.90 E-value=1.5e-08 Score=106.82 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=39.0
Q ss_pred CCceEEEEEcCCCCCCCCCcc------cccccHHHHHHHHHHHHHHcCCCEEEE-cCCCCCC
Q 013207 10 ANTVRILVATDCHLGYMEKDE------IRRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHE 64 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~------~r~~d~~~~feeil~~a~~~~vD~Vli-aGDLfd~ 64 (447)
...++|||+||+|-.....+. ....-.+..+..+++.+++++++.|++ +||+|+.
T Consensus 4 ~~~l~Il~tnD~Hg~~~~~~~~~~~~~~~~~gG~a~la~~i~~~r~~~~~~llldaGD~~~g 65 (509)
T 3ive_A 4 AKDVTIIYTNDLHAHVEPYKVPWIADGKRDIGGWANITTLVKQEKAKNKATWFFDAGDYFTG 65 (509)
T ss_dssp CEEEEEEEECCCTTCCSCBCCTTSGGGTSCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSSS
T ss_pred ceEEEEEEEccccCCccCcccccccCCCcCcCCHHHHHHHHHHHHhcCCCeEEEECCCCCCC
Confidence 356999999999943222111 011112667888999999999999888 9999985
No 31
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Probab=98.88 E-value=1.9e-08 Score=106.18 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=35.2
Q ss_pred CCCCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHc----CC-CEEEEcCCCCCCC
Q 013207 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK----EV-DFVLLGGDLFHEN 65 (447)
Q Consensus 8 ~~~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~----~v-D~VliaGDLfd~~ 65 (447)
+....|||||+||+|......+ .+.-.+..+..+++.++++ ++ +++|.+||+++..
T Consensus 4 ~~~~~l~Il~~~D~H~~~~~~~--~~~~G~~~~~~~v~~~r~~~~~~~~~~lvl~~GD~~~g~ 64 (516)
T 1hp1_A 4 DKTYKITVLHTNDHHGHFWRNE--YGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGV 64 (516)
T ss_dssp TCCEEEEEEEECCCTTCCSCCT--TSCCCHHHHHHHHHHHHHHHHHHTCEEEEEECSCCSSSC
T ss_pred CCceEEEEEEecccccCccCCC--CCCcCHHHHHHHHHHHHHhhhccCCCEEEEeCCccCCCc
Confidence 3445699999999997643211 1111233455555555443 56 7999999999754
No 32
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2
Probab=98.83 E-value=5.1e-08 Score=103.86 Aligned_cols=203 Identities=15% Similarity=0.119 Sum_probs=103.7
Q ss_pred CCCceEEEEEcCCCCCCCCCccc-cc----ccHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCCCCCHH-HHHHHHHHHHH
Q 013207 9 IANTVRILVATDCHLGYMEKDEI-RR----HDSFEAFEEICSIAEQKEVD-FVLLGGDLFHENKPSRS-TLVKAIEILRR 81 (447)
Q Consensus 9 ~~~~mrILh~SD~HLG~~~~~~~-r~----~d~~~~feeil~~a~~~~vD-~VliaGDLfd~~~ps~~-~l~~~~~~L~~ 81 (447)
....+||+|+||+|......... .. .-.+..+..+++.++++++| ++|.+||+++....+.. .-...+++|..
T Consensus 26 ~~~~l~Il~~~D~H~~~~~~~~~~~~~~~~~gg~~~~~~~v~~~r~~~~~~l~l~~GD~~~gs~~~~~~~~~~~~~~ln~ 105 (552)
T 2z1a_A 26 GGFTLTLVHTNDTHAHLEPVELTLSGEKTPVGGVARRVALFDRVWARAKNPLFLDAGDVFQGTLYFNQYRGLADRYFMHR 105 (552)
T ss_dssp --CEEEEEEECCCTTCCSCEEEECSSSEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSSSSHHHHHHTTHHHHHHHHH
T ss_pred CCeeEEEEEEcccccCcccccccCcccccccCCHHHHHHHHHHHHhhCCCEEEEeCCCCCCCcHHHHHhCCcHHHHHHHh
Confidence 34569999999999543221000 00 12356678889999888998 88999999996521110 01123444443
Q ss_pred hhcCCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEec-ceeccCC
Q 013207 82 HCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFG-KMVLGGS 160 (447)
Q Consensus 82 l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg-~~~l~~~ 160 (447)
+ +. .+++.||||...+.. ...+.++.+++- +++ .....+.
T Consensus 106 l-----------------------------------g~-d~~~lGNHEfd~g~~--~l~~~l~~~~~~-~L~aNv~~~~~ 146 (552)
T 2z1a_A 106 L-----------------------------------RY-RAMALGNHEFDLGPG--PLADFLKGARFK-VVSANVDASRE 146 (552)
T ss_dssp T-----------------------------------TC-CEEECCGGGGTTCHH--HHHHHHTTCCSE-EECTTEECTTC
T ss_pred c-----------------------------------CC-CccccccccccCCHH--HHHHHHhhCCCC-EEEEEEecCCC
Confidence 2 33 367889999865432 233456655542 222 1110000
Q ss_pred -CcceeEEEEE-EEecCCeeEEEEecCCCChHHHHh-----hhcCh-hHHhhccchhhhhccccCceeEEEeecccccCC
Q 013207 161 -GVGEITVYPI-LIRKGSTAVALYGLGNIRDERLNR-----MFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTN 232 (447)
Q Consensus 161 -~~~~i~~~Pi-~l~~g~~~vaiyGl~~~~~~~l~~-----~~~~~-~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~ 232 (447)
.... .+.|. .++.++.+|.|.|+-...-..... .|.+. +.++...+...+ ....+.|++.|.....-
T Consensus 147 ~~~~~-~~~~~~i~~~~G~kIgiiG~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~l~~---~~~d~iIvL~H~g~~~d- 221 (552)
T 2z1a_A 147 PRLKG-LFAPYAVVVVGGERVGIIGLTTPDTREISNPGPTVAFLDPYESAQKAVYELLA---KGVNKIVVLSHLGYGED- 221 (552)
T ss_dssp GGGTT-SCBSEEEEEETTEEEEEEEEECTTHHHHSCCCTTCEECCHHHHHHHHHHHHHH---TTCCCEEEEEESCHHHH-
T ss_pred ccccc-ccCCeEEEEECCEEEEEEEecccchhhccCCCCCcEECCHHHHHHHHHHHHHh---cCCCEEEEEeCCCcchH-
Confidence 0000 02232 345677899999984322110000 01100 111111111111 12468899999865210
Q ss_pred CCCcccccccccCCcEEEeccccCccc
Q 013207 233 PKNAINEHFLPRFLDFVVWGHEHECLI 259 (447)
Q Consensus 233 ~~~~i~~~~~~~~~D~v~~GH~H~~~i 259 (447)
..+... + .++|+++.||.|..+.
T Consensus 222 --~~la~~-~-~gvDlIlgGHtH~~~~ 244 (552)
T 2z1a_A 222 --LKLARR-L-VGVQVIVGGHSHTLLG 244 (552)
T ss_dssp --HHHHTT-C-SSCCEEEECSSCCCBS
T ss_pred --HHHHHh-C-CCccEEEeCCcCcccc
Confidence 001111 2 4699999999999764
No 33
>3qfk_A Uncharacterized protein; structural genomics, center for structural genomics of infec diseases, csgid, phosphoesterase, hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus subsp}
Probab=98.72 E-value=7.8e-08 Score=101.82 Aligned_cols=216 Identities=18% Similarity=0.256 Sum_probs=109.0
Q ss_pred CCceEEEEEcCCCCCCCCCccc----ccccHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCCCCCHHHH-------HHHHH
Q 013207 10 ANTVRILVATDCHLGYMEKDEI----RRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHENKPSRSTL-------VKAIE 77 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~~----r~~d~~~~feeil~~a~~~~vD-~VliaGDLfd~~~ps~~~l-------~~~~~ 77 (447)
...++|||+||+|-.....+.. ...-.+..+..+++.+++++++ ++|.+||+++.. |....+ ...++
T Consensus 17 ~~~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~gs-~~~~~~~~~~~~~~~~~~ 95 (527)
T 3qfk_A 17 GSNIAFYVVSDVHGYIFPTDFTSRNQYQPMGLLLANHVIEQDRRQYDQSFKIDNGDFLQGS-PFCNYLIAHSGSSQPLVD 95 (527)
T ss_dssp -CEEEEEEECCCTTCCSSCCSSSTTCCCSCSHHHHHHHHHHHHTTSSEEEEEECSCCSSSS-HHHHHHHHTTCSSHHHHH
T ss_pred CCcEEEEEEeccCCCccCcccccCCCcCCCcHHHHHHHHHHHHhcCCCEEEEECCCcCCCc-HHHHHHhhcccCcchHHH
Confidence 4679999999999554322111 1112256678888888888887 566799999865 222111 23455
Q ss_pred HHHHhhcCCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceec
Q 013207 78 ILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVL 157 (447)
Q Consensus 78 ~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l 157 (447)
+|..+ +.. +++.||||.-.+.. ...+.++.+++- +++....
T Consensus 96 ~ln~l-----------------------------------g~D-~~t~GNHefd~G~~--~l~~~~~~~~~p-~l~aNv~ 136 (527)
T 3qfk_A 96 FYNRM-----------------------------------AFD-FGTLGNHEFNYGLP--YLKDTLRRLNYP-VLCANIY 136 (527)
T ss_dssp HHHHT-----------------------------------CCC-EECCCGGGGTTCHH--HHHHHHHHCSSC-BCCSSEE
T ss_pred HHHhc-----------------------------------CCc-EEeccccccccCHH--HHHHHHHhCCCC-EEEeEee
Confidence 55542 444 45689999655432 233344443321 1110000
Q ss_pred -cCCCcceeEEEE-EEEecCCeeEEEEecCCC------ChHHHHh-hhcCh-hHHhhccchhhhhccccCceeEEEeecc
Q 013207 158 -GGSGVGEITVYP-ILIRKGSTAVALYGLGNI------RDERLNR-MFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQN 227 (447)
Q Consensus 158 -~~~~~~~i~~~P-i~l~~g~~~vaiyGl~~~------~~~~l~~-~~~~~-~~v~~l~p~~~~~~~~~~~~~Ill~H~~ 227 (447)
.+. .....| ..++.++.+|++.|+-.. .+..... .|... +.++...+...+ ...+.|++.|..
T Consensus 137 ~~g~---p~~~~py~i~e~~G~kIgviG~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~v~~l~~----~~D~iIvl~H~G 209 (527)
T 3qfk_A 137 ENDS---TLTDNGVKYFQVGDQTVGVIGLTTQFIPHWEQPEHIQSLTFHSAFEILQQYLPEMKR----HADIIVVCYHGG 209 (527)
T ss_dssp ETTE---ESSSCSEEEEEETTEEEEEEEEECTTGGGTSCHHHHTTEEECCHHHHHHHHHHHHHH----HCSEEEEEEECC
T ss_pred eCCC---CccCCCEEEEEECCEEEEEEEeccCCcccccCccccCCcEEcCHHHHHHHHHHHHHh----CCCEEEEEeCcC
Confidence 000 000012 344567789999998432 1111000 01110 111111111111 145789999976
Q ss_pred cccCC--CC--Cc-ccc----cc---cccCCcEEEeccccCcccCCcccCCCCceEeccCC
Q 013207 228 RVKTN--PK--NA-INE----HF---LPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (447)
Q Consensus 228 ~~~~~--~~--~~-i~~----~~---~~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS 276 (447)
...-. +. .. ..+ .+ +..++|+|+.||.|..+. ..+ .+..|++||+
T Consensus 210 ~~~d~~~~~~~~~~~~e~~~~~la~~~~~giDlIlgGHtH~~~~--~~v--~~~~ivqag~ 266 (527)
T 3qfk_A 210 FEKDLESGTPTEVLTGENEGYAMLEAFSKDIDIFITGHQHRQIA--ERF--KQTAVIQPGT 266 (527)
T ss_dssp CSBCTTTCCBSSCCSSSCCHHHHHHHHGGGCSEEECCSSCCEEE--EEE--TTEEEEEECS
T ss_pred cccccccCccccccccchHHHHHHHhcCCCCcEEEECCCCcccc--eEE--CCEEEeccCh
Confidence 53210 00 00 000 12 225799999999999763 333 3467888885
No 34
>4h2g_A 5'-nucleotidase; dimer, hydrolase, phosphatase, extracellular; HET: ADN; 1.55A {Homo sapiens} PDB: 4h2f_A* 4h1y_P* 4h2i_A* 4h1s_A* 4h2b_A*
Probab=98.68 E-value=1.3e-07 Score=100.45 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=39.4
Q ss_pred CCCceEEEEEcCCCCCCCCCcccc--------cccHHHHHHHHHHHHHHcCC-CEEEEcCCCCCCC
Q 013207 9 IANTVRILVATDCHLGYMEKDEIR--------RHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHEN 65 (447)
Q Consensus 9 ~~~~mrILh~SD~HLG~~~~~~~r--------~~d~~~~feeil~~a~~~~v-D~VliaGDLfd~~ 65 (447)
....++|||+||+|......+... ..-.+..+..+++.++++++ +++|.+||+|+..
T Consensus 22 ~~~~l~Il~~nD~Hg~~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~g~ 87 (546)
T 4h2g_A 22 DPWELTILHTNDVHSRLEQTSEDSSKCVDASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGT 87 (546)
T ss_dssp -CEEEEEEEECCCTTCCSCBCTTSSBCSSGGGCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSSSS
T ss_pred CceEEEEEEecccccCCcccccccccccccccccCCHHHHHHHHHHHHhhCCCEEEEECCccCCCc
Confidence 345699999999995543322110 01125677888888888887 4899999999965
No 35
>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A {Haemophilus influenzae} PDB: 3zu0_A*
Probab=98.58 E-value=2.9e-07 Score=98.54 Aligned_cols=56 Identities=21% Similarity=0.231 Sum_probs=38.5
Q ss_pred CCceEEEEEcCCCCCCCCCcc---cc------cccHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCC
Q 013207 10 ANTVRILVATDCHLGYMEKDE---IR------RHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHEN 65 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~---~r------~~d~~~~feeil~~a~~~~vD-~VliaGDLfd~~ 65 (447)
.-.++|||++|+|-.....+. .. ..-.+..+..+++.+++++++ ++|.+||+|+..
T Consensus 10 ~~~l~Il~tnD~Hg~~~~~~~~~~~~~~~~~~~~gG~arla~~i~~~r~~~~~~l~l~~GD~~~gs 75 (579)
T 3ztv_A 10 AVELSILHINDHHSYLEPHETRINLNGQQTKVDIGGFSAVNAKLNKLRKKYKNPLVLHAGDAITGT 75 (579)
T ss_dssp CEEEEEEEECCCTTCCSCEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSCSS
T ss_pred ceEEEEEEeCccccCccCCccccccCCcccccccCCHHHHHHHHHHHHhhCCCEEEEeCCCCCCCc
Confidence 345999999999943322110 00 001266788888888888887 888999999965
No 36
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=98.44 E-value=6.8e-06 Score=82.20 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=37.5
Q ss_pred CceEEEEEcCCCCCCCCCccc----ccccHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCC
Q 013207 11 NTVRILVATDCHLGYMEKDEI----RRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHEN 65 (447)
Q Consensus 11 ~~mrILh~SD~HLG~~~~~~~----r~~d~~~~feeil~~a~~~~vD-~VliaGDLfd~~ 65 (447)
-.++|||++|+|-.....+.. ...-.+..+..+++.+++++++ ++|.+||+|..+
T Consensus 7 ~~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~~n~llld~GD~~qGs 66 (339)
T 3jyf_A 7 VDLRIMETTDLHSNMMDFDYYKDAATEKFGLVRTASLIEQARAEVKNSVLVDNGDVIQGS 66 (339)
T ss_dssp EEEEEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHTCSCEEEEECSCCSSSS
T ss_pred eeEEEEEEeeCCCCcccccccCCCccccCCHHHHHHHHHHHHhhCCCEEEEECCCCCCCc
Confidence 358999999999654332211 1112356677888888888887 668899999743
No 37
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=98.38 E-value=4.2e-06 Score=83.79 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=37.2
Q ss_pred CCceEEEEEcCCCCCCCCCccc----ccccHHHHHHHHHHHHHHcCCCE-EEEcCCCCCCC
Q 013207 10 ANTVRILVATDCHLGYMEKDEI----RRHDSFEAFEEICSIAEQKEVDF-VLLGGDLFHEN 65 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~~----r~~d~~~~feeil~~a~~~~vD~-VliaGDLfd~~ 65 (447)
.-.++|||++|+|-.....+.. ...-.+..+..+++.+++++++. +|.+||+|...
T Consensus 9 ~~~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~~~~llld~GD~~qGs 69 (341)
T 3gve_A 9 QVHLSILATTDIHANMMDYDYYSDKETADFGLARTAQLIQKHREQNPNTLLVDNGDLIQGN 69 (341)
T ss_dssp EEEEEEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHHCSSEEEEECSCCSCSS
T ss_pred ceEEEEEEEeccCCCccCccccCCCccccCCHHHHHHHHHHHHhcCCCEEEEecCccCCCc
Confidence 3469999999999654332211 11113456777888888888775 56799999754
No 38
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}
Probab=98.29 E-value=4.4e-07 Score=87.45 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCC-CEEEEcCCCCCCCCCC
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPS 68 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~v-D~VliaGDLfd~~~ps 68 (447)
+||+++||+| |. +..|+++++.+....+ |.|+++||++|....+
T Consensus 19 ~~i~visDiH-g~-----------~~~l~~~l~~~~~~~~~d~ii~~GD~vd~g~~~ 63 (262)
T 2qjc_A 19 GRVIIVGDIH-GC-----------RAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDS 63 (262)
T ss_dssp SCEEEECCCT-TC-----------HHHHHHHHHHHTCCTTTSEEEECSCCSSSSSCH
T ss_pred CeEEEEeCCC-CC-----------HHHHHHHHHHHhccCCCCEEEEecCCCCCCCCH
Confidence 4999999999 42 4678899998877665 9999999999986433
No 39
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=98.27 E-value=3.4e-07 Score=85.53 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=37.6
Q ss_pred CCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCCCC
Q 013207 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK-EVDFVLLGGDLFHENKPS 68 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~-~vD~VliaGDLfd~~~ps 68 (447)
..+|||+++||+|-. +.+|+++++.+... ++|.|+++||++|....+
T Consensus 10 ~~~~~i~visDiHg~------------~~~l~~~l~~~~~~~~~d~~i~~GD~~~~g~~~ 57 (221)
T 1g5b_A 10 SKYRNIWVVGDLHGC------------YTNLMNKLDTIGFDNKKDLLISVGDLVDRGAEN 57 (221)
T ss_dssp GGCSCEEEECCCTTC------------HHHHHHHHHHHTCCTTTCEEEECSCCSSSSSCH
T ss_pred CCCceEEEEEcCCCC------------HHHHHHHHHHccCCCCCCEEEEeCCccCCCCCh
Confidence 456999999999932 56788888887654 799999999999977433
No 40
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}
Probab=98.09 E-value=1.9e-06 Score=83.88 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=51.7
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHH-cCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcce
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ-KEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~-~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~ 91 (447)
|||+++||+|-. +..|+++++.+.. .++|.++++||++|....+.+ ++++|.++
T Consensus 1 M~i~vigDiHG~------------~~~l~~ll~~~~~~~~~d~~v~lGD~vdrG~~s~~----~l~~l~~l--------- 55 (280)
T 2dfj_A 1 MATYLIGDVHGC------------YDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLD----VLRYVKSL--------- 55 (280)
T ss_dssp -CEEEECCCCSC------------HHHHHHHHHHTTCCTTTCEEEECSCCSSSSSCHHH----HHHHHHHT---------
T ss_pred CeEEEEecCCCC------------HHHHHHHHHHhCCCCCCCEEEEeCCcCCCCCccHH----HHHHHHhC---------
Confidence 799999999943 5668888888765 478999999999998754443 45566653
Q ss_pred eeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCC
Q 013207 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (447)
Q Consensus 92 ~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~ 131 (447)
..++++|.||||..
T Consensus 56 --------------------------~~~~~~v~GNHe~~ 69 (280)
T 2dfj_A 56 --------------------------GDSVRLVLGNHDLH 69 (280)
T ss_dssp --------------------------GGGEEECCCHHHHH
T ss_pred --------------------------CCceEEEECCCcHH
Confidence 23799999999963
No 41
>1t71_A Phosphatase, conserved HYPO; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9
Probab=98.05 E-value=3.7e-05 Score=74.69 Aligned_cols=194 Identities=13% Similarity=0.130 Sum_probs=100.4
Q ss_pred CceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCc
Q 013207 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK-EVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPV 89 (447)
Q Consensus 11 ~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~-~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~ 89 (447)
..||||+++|.| |+. -...+...+...+++ ++|++++.||-+-...+-.. ...+.|.++
T Consensus 3 ~~m~ilf~GDv~-G~~---------G~~~l~~~l~~lr~~~~~d~vi~Ngen~~gG~g~~~---~~~~~ln~~------- 62 (281)
T 1t71_A 3 NSIKFIFLGDVY-GKA---------GRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSL---KHYEFLKEA------- 62 (281)
T ss_dssp CCCEEEEECEEB-HHH---------HHHHHHTTHHHHHHHHTCSEEEEECTBTTTTSSCCH---HHHHHHHHH-------
T ss_pred ceEEEEEECCcC-ChH---------HHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCcCH---HHHHHHHhc-------
Confidence 359999999999 542 245566667776655 68999998887765544332 244555543
Q ss_pred ceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcceeEEEE
Q 013207 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYP 169 (447)
Q Consensus 90 ~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~~P 169 (447)
++-++++ |||+.-.+.+ .++.|.....+. -.+......... ...|
T Consensus 63 ----------------------------G~Da~Tl-GNHefD~g~~---~~~~l~~~~~v~-~aN~p~~~~~~~--~g~g 107 (281)
T 1t71_A 63 ----------------------------GVNYITM-GNHTWFQKLD---LAVVINKKDLVR-PLNLDTSFAFHN--LGQG 107 (281)
T ss_dssp ----------------------------TCCEEEC-CTTTTCCGGG---HHHHTTCTTEEC-BSCBCTTSTTTT--SSBS
T ss_pred ----------------------------CCCEEEE-ccCcccCCcc---HHHHhhhcCEEe-eccCCccccccc--CCCC
Confidence 5556555 9999877621 233333221110 000000000000 0012
Q ss_pred -EEEecCCeeEEEEecC----CCChHHHHhhhcChhHHh-hccchhhhhccccCceeEEEeecccccCCCCCcccccccc
Q 013207 170 -ILIRKGSTAVALYGLG----NIRDERLNRMFQTPHAVQ-WMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLP 243 (447)
Q Consensus 170 -i~l~~g~~~vaiyGl~----~~~~~~l~~~~~~~~~v~-~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~i~~~~~~ 243 (447)
..++.++.+|++.|+- +..- .+...|. .++ .++ . ....+-|++.|..... ....-...++
T Consensus 108 ~~I~e~~G~kIgVIgl~g~~~f~~~-~~~~pf~---~a~~~v~-~------~~~diIIv~~H~g~t~---Ek~~la~~~d 173 (281)
T 1t71_A 108 SLVFEFNKAKIRITNLLGTSVPLPF-KTTNPFK---VLKELIL-K------RDCDLHIVDFHAETTS---EKNAFCMAFD 173 (281)
T ss_dssp EEEEECSSCEEEEEEEECTTSCCSS-CBCCHHH---HHHHHHT-T------CCCSEEEEEEECSCHH---HHHHHHHHHT
T ss_pred eEEEEECCEEEEEEEeeccccccCc-cccCHHH---HHHHHHh-h------cCCCEEEEEeCCCchH---HHHHHHHhCC
Confidence 3456677899998862 2210 0000011 111 111 1 1235789999964310 1000112355
Q ss_pred cCCcEEEeccccCcccCCcccCCCCceEec
Q 013207 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQ 273 (447)
Q Consensus 244 ~~~D~v~~GH~H~~~i~pq~~~~~~~~i~y 273 (447)
.++|+|+-||.|.....++.++++..++..
T Consensus 174 g~VD~VvGgHTHv~t~d~~il~~gt~~i~d 203 (281)
T 1t71_A 174 GYVTTIFGTHTHVPSADLRITPKGSAYITD 203 (281)
T ss_dssp TTSSEEEEESSSSCCTTCEECTTSCEEESC
T ss_pred CCeEEEEeCCCCcCCCceEEecCCcEEEec
Confidence 569999999999988766554433344444
No 42
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 1.90A {Candida albicans} SCOP: d.114.1.1 d.159.1.2
Probab=97.95 E-value=2.8e-05 Score=82.75 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=34.3
Q ss_pred CCCCceEEEEEcCCCCCCCCCcc--c-ccc-cHHHHHHHHHHHH-HHcCCCE-EEEcCCCCCC
Q 013207 8 DIANTVRILVATDCHLGYMEKDE--I-RRH-DSFEAFEEICSIA-EQKEVDF-VLLGGDLFHE 64 (447)
Q Consensus 8 ~~~~~mrILh~SD~HLG~~~~~~--~-r~~-d~~~~feeil~~a-~~~~vD~-VliaGDLfd~ 64 (447)
.....++|||++|+|-....... . ... -.+..+-..++.. +++++|. +|.+||+|+.
T Consensus 11 ~~~~~l~ILhtnD~Hg~~~~~~~~~~~~~~~Gg~a~l~~~i~~~~~~~~~~~LlldaGD~~~G 73 (557)
T 3c9f_A 11 LTWNDINFVHTTDTHGWYSGHINQPLYHANWGDFISFTTHMRRIAHSRNQDLLLIDSGDRHDG 73 (557)
T ss_dssp CCCCSEEEEEECCCTTCTTCCSSCGGGCCCHHHHHHHHHHHHHHHHHTTCEEEEEECSCCCSS
T ss_pred CCceEEEEEEEcccccCccCcccccccccccchHHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 34467999999999976432210 0 000 1134444444433 3577885 7999999975
No 43
>4h1s_A 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo sapiens}
Probab=97.85 E-value=0.00016 Score=76.27 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCCCCCCccc--------ccccHHHHHHHHHHHHHHcCCCE-EEEcCCCCCCC
Q 013207 13 VRILVATDCHLGYMEKDEI--------RRHDSFEAFEEICSIAEQKEVDF-VLLGGDLFHEN 65 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~--------r~~d~~~~feeil~~a~~~~vD~-VliaGDLfd~~ 65 (447)
++|||++|+|--....+.. ...-.+..+..+++.+++++++. +|-+||+|..+
T Consensus 4 LtILhtnD~Hg~l~~~~~~~~~~~~~~~~~GG~arlat~i~~~r~~~~n~llldaGD~~qGs 65 (530)
T 4h1s_A 4 LTILHTNDVHSRLEQTSEDSSKCVNASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGT 65 (530)
T ss_dssp EEEEEECCCTTCCSCBCTTSSBCCSTTSCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSCSS
T ss_pred EEEEEEcccccCCcccCcccccccccccccCcHHHHHHHHHHHHhhCcCeEEEEeCCcccch
Confidence 7899999999433221110 00112556777888888888875 55699999865
No 44
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Probab=97.77 E-value=2.6e-05 Score=77.99 Aligned_cols=49 Identities=10% Similarity=0.261 Sum_probs=37.3
Q ss_pred CceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHH--------cCCCEEEEcCCCCCCCCCCHHH
Q 013207 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ--------KEVDFVLLGGDLFHENKPSRST 71 (447)
Q Consensus 11 ~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~--------~~vD~VliaGDLfd~~~ps~~~ 71 (447)
..|||+++||+|-. +..|.++++.+.. .++|.++++||++|...-+.++
T Consensus 69 ~~~~i~vigDiHG~------------~~~l~~ll~~~~~~~~~~~~~~~~d~~v~lGD~vdrG~~s~ev 125 (342)
T 2z72_A 69 GIKKVVALSDVHGQ------------YDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEV 125 (342)
T ss_dssp CCCEEEEECCCTTC------------HHHHHHHHHHTTSBCTTSCBCCTTCEEEECSCCSSSSSCHHHH
T ss_pred CCCCEEEEECCCCC------------HHHHHHHHHhcCCCcccccccCCCCEEEEECCCcCCCCCHHHH
Confidence 46899999999943 4567788876542 1589999999999988555554
No 45
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Probab=97.73 E-value=0.001 Score=63.57 Aligned_cols=180 Identities=17% Similarity=0.210 Sum_probs=97.6
Q ss_pred eEEEEEcCC--CCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCc
Q 013207 13 VRILVATDC--HLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRSTLVKAIEILRRHCLNDRPV 89 (447)
Q Consensus 13 mrILh~SD~--HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~Vli-aGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~ 89 (447)
||||++.|. |-| +..+.+.+...+++. |++++ +||.++..--+. . ..+.|.+
T Consensus 1 m~ilfiGDi~g~~G------------~~~v~~~l~~lr~~~-d~vi~ngen~~~G~g~~~-~---~~~~l~~-------- 55 (252)
T 2z06_A 1 MRVLFIGDVMAEPG------------LRAVGLHLPDIRDRY-DLVIANGENAARGKGLDR-R---SYRLLRE-------- 55 (252)
T ss_dssp CEEEEECCBCHHHH------------HHHHHHHHHHHGGGC-SEEEEECTTTTTTSSCCH-H---HHHHHHH--------
T ss_pred CEEEEEEecCCccc------------HHHHHHHHHHHHhhC-CEEEEeCCCccCCCCcCH-H---HHHHHHh--------
Confidence 899999999 444 567888899988888 98766 556666553332 2 3344544
Q ss_pred ceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCCceEEecceeccCCCcceeEEEE
Q 013207 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYP 169 (447)
Q Consensus 90 ~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v~~fg~~~l~~~~~~~i~~~P 169 (447)
.++-++ ..|||..-.+. .++.+....++ .-.+..-+.+ ..|
T Consensus 56 ---------------------------~G~D~~-T~GNHefD~~~----l~~~l~~~~~v-rpaN~~~~~p------g~~ 96 (252)
T 2z06_A 56 ---------------------------AGVDLV-SLGNHAWDHKE----VYALLESEPVV-RPLNYPPGTP------GKG 96 (252)
T ss_dssp ---------------------------HTCCEE-ECCTTTTSCTT----HHHHHHHSSEE-CCTTSCSSCS------SCS
T ss_pred ---------------------------CCCCEE-EeccEeeECch----HHHHhccCCce-EeecCCCCCC------CCC
Confidence 366665 55999887652 33444332211 0000000000 012
Q ss_pred -EEEecCCeeEEEEec-CCCChHHHHhhhcCh-----hHHhhccchhhhhccccCceeEEEeecccccCCCCCccccccc
Q 013207 170 -ILIRKGSTAVALYGL-GNIRDERLNRMFQTP-----HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFL 242 (447)
Q Consensus 170 -i~l~~g~~~vaiyGl-~~~~~~~l~~~~~~~-----~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~i~~~~~ 242 (447)
..++.++.++++.|+ |... +. .+..+ +.++.++ ..+-|++.|..... ....-...+
T Consensus 97 ~~i~~~~G~kIgVi~l~g~~~---~~-~~~~pf~~~~~~v~~lk----------~d~IIv~~H~g~ts---ek~~la~~~ 159 (252)
T 2z06_A 97 FWRLEVGGESLLFVQVMGRIF---MD-PLDDPFRALDRLLEEEK----------ADYVLVEVHAEATS---EKMALAHYL 159 (252)
T ss_dssp EEEEEETTEEEEEEEEECCTT---SC-CCCCHHHHHHHHHHHCC----------CSEEEEEEECSCHH---HHHHHHHHH
T ss_pred eEEEEECCEEEEEEEcccccC---cc-ccCCHHHHHHHHHHHhC----------CCEEEEEeCCCcHH---HHHHHHHhC
Confidence 345667789988875 1110 00 01110 1122221 34788999964311 000111234
Q ss_pred ccCCcEEEeccccCcccCCcccCCCCceEec
Q 013207 243 PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQ 273 (447)
Q Consensus 243 ~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~y 273 (447)
+..+|+|+-||.|.....|+.++++..++..
T Consensus 160 dg~Vd~VvGgHTHv~t~d~~il~~gt~~itd 190 (252)
T 2z06_A 160 DGRASAVLGTHTHVPTLDATRLPKGTLYQTD 190 (252)
T ss_dssp BTTBSEEEEESSCSCBSCCEECTTSCEEESC
T ss_pred CCCeEEEEcCCCCcCCCccEEcCCCcEeecC
Confidence 5569999999999988776666444344444
No 46
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI, protein STR initiative; 2.30A {Deinococcus radiodurans} SCOP: d.159.1.9
Probab=97.72 E-value=0.00031 Score=67.30 Aligned_cols=183 Identities=16% Similarity=0.131 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCccee
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~ 92 (447)
||||++.|.= |.. -+.++...+...+++. |++++.|+-+-...+-... ..+.|.+
T Consensus 1 m~ilf~GDv~-g~~---------G~~~~~~~l~~lr~~~-d~vi~nge~~~~G~g~~~~---~~~~l~~----------- 55 (255)
T 1t70_A 1 MRVLFIGDVF-GQP---------GRRVLQNHLPTIRPQF-DFVIVNMENSAGGFGMHRD---AARGALE----------- 55 (255)
T ss_dssp CEEEEECCBB-HHH---------HHHHHHHHHHHHGGGC-SEEEEECTBTTTTSSCCHH---HHHHHHH-----------
T ss_pred CEEEEEeccC-ChH---------HHHHHHHHHHHHHhhC-CEEEECCCCccCCcCCCHH---HHHHHHh-----------
Confidence 8999999994 422 2567788888888887 9987776655433333322 3444554
Q ss_pred eechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCCCCCcchhhhhhhcCC--ce---EEecceeccCCCcceeEE
Q 013207 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACN--LV---NYFGKMVLGGSGVGEITV 167 (447)
Q Consensus 93 ~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g--~v---~~fg~~~l~~~~~~~i~~ 167 (447)
.++-++++ |||+.-.+. .++.|+... ++ |+-.... + .
T Consensus 56 ------------------------~G~Da~Tl-GNHefD~~~----l~~~l~~~~~~~~~~aN~~~~~~---p--g---- 97 (255)
T 1t70_A 56 ------------------------AGAGCLTL-GNHAWHHKD----IYPMLSEDTYPIVRPLNYADPGT---P--G---- 97 (255)
T ss_dssp ------------------------HTCSEEEC-CTTTTSSTT----HHHHHHTTCSCEECCSCCCCTTC---S--S----
T ss_pred ------------------------CCCCEEEe-ccccccCch----HHHHHhhCCCcEEEEeccCCCCC---C--C----
Confidence 25666665 999887541 334444433 11 1110100 0 0
Q ss_pred EE-EEEecCCeeEEEEec-C--CCChHHHHhhhcCh-hHHhhccchhhhhccccCceeEEEeecccccCCCCCccccccc
Q 013207 168 YP-ILIRKGSTAVALYGL-G--NIRDERLNRMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFL 242 (447)
Q Consensus 168 ~P-i~l~~g~~~vaiyGl-~--~~~~~~l~~~~~~~-~~v~~l~p~~~~~~~~~~~~~Ill~H~~~~~~~~~~~i~~~~~ 242 (447)
.| ..++.++.+|++.|+ + ++. .|..+ ..++.+.+.. ...+-|++.|..... ....-...+
T Consensus 98 ~g~~I~~~~G~kIgVigl~g~~~~~------~~~~p~~~~~~~v~~l------~~d~IIv~~H~e~t~---Ek~~la~~~ 162 (255)
T 1t70_A 98 VGWRTFDVNGEKLTVVNLLGRVFME------AVDNPFRTMDALLERD------DLGTVFVDFHAEATS---EKEAMGWHL 162 (255)
T ss_dssp CSEEEEECSSSEEEEEEEECCTTSC------CCSCHHHHHHHHTTCS------SCCEEEEEEECSCHH---HHHHHHHHH
T ss_pred CCeEEEEECCEEEEEEEeecCcCcc------cccCHHHHHHHHHHHh------CCCEEEEEeCCCChH---HHHHHHHhC
Confidence 12 345667789998876 1 221 11111 1111111111 135789999963310 100011234
Q ss_pred ccCCcEEEeccccCcccCCcccCCCCceEec
Q 013207 243 PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQ 273 (447)
Q Consensus 243 ~~~~D~v~~GH~H~~~i~pq~~~~~~~~i~y 273 (447)
+..+|+|+-||.|.....++.++++..++..
T Consensus 163 dg~vd~VvGgHTHv~~~d~~il~~gt~~i~d 193 (255)
T 1t70_A 163 AGRVAAVIGTHTHVPTADTRILKGGTAYQTD 193 (255)
T ss_dssp TTSSSEEEEESSCSCBSCCEEETTTEEEESC
T ss_pred CCCeEEEEeCCCCcCCCceEEcCCCeEEEEc
Confidence 5569999999999987766554433333343
No 47
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*
Probab=97.64 E-value=8.2e-05 Score=73.34 Aligned_cols=74 Identities=22% Similarity=0.280 Sum_probs=54.8
Q ss_pred ceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcce
Q 013207 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (447)
Q Consensus 12 ~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~ 91 (447)
.++|.+++|+| |. +..|.++++.+.....+.+++.||++|+..-|.++ +.+|..+..
T Consensus 49 ~~~i~viGDIH-G~-----------~~~L~~ll~~~~~~~~~~~vflGD~VDRG~~s~ev----l~lL~~lk~------- 105 (309)
T 2ie4_C 49 RCPVTVCGDVH-GQ-----------FHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVET----VTLLVALKV------- 105 (309)
T ss_dssp CSSEEEECCCT-TC-----------HHHHHHHHHHHCCTTTSCEEECSCCSSSSTTHHHH----HHHHHHHHH-------
T ss_pred cCCEEEEecCC-CC-----------HHHHHHHHHHcCCCCCCEEEEeCCccCCCCChHHH----HHHHHHHHh-------
Confidence 37899999999 42 56788888888766788899999999988666554 445554320
Q ss_pred eeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCCC
Q 013207 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (447)
Q Consensus 92 ~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~~ 132 (447)
..+-.++++.||||...
T Consensus 106 ------------------------~~p~~v~~lrGNHE~~~ 122 (309)
T 2ie4_C 106 ------------------------RYRERITILRGNHESRQ 122 (309)
T ss_dssp ------------------------HCTTTEEECCCTTSSTT
T ss_pred ------------------------hCCCcEEEEeCCCCHHH
Confidence 11335999999999864
No 48
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.53 E-value=0.00015 Score=75.31 Aligned_cols=74 Identities=20% Similarity=0.203 Sum_probs=53.3
Q ss_pred CceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcC-CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCc
Q 013207 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKE-VDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPV 89 (447)
Q Consensus 11 ~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~-vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~ 89 (447)
..|||++++|+|-. +..|.++++.+.... .|.+++.||++|...-|.+++ .+|..+..
T Consensus 211 ~~~~~~vigDiHG~------------~~~l~~~l~~~~~~~~~~~~v~lGD~vdrG~~s~e~~----~~l~~l~~----- 269 (477)
T 1wao_1 211 ETEKITVCGDTHGQ------------FYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVI----LTLFGFKL----- 269 (477)
T ss_dssp SSCEEEEECBCTTC------------HHHHHHHHHHHCCCBTTBCEEEESCCSSSSTTHHHHH----HHHHHHHH-----
T ss_pred CCcceEEEeCCCCC------------HHHHHHHHHHcCCCCCcCeEEEeccccCCCcchHHHH----HHHHHHHh-----
Confidence 46899999999932 567788888775444 356999999999986666654 34443310
Q ss_pred ceeeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCC
Q 013207 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (447)
Q Consensus 90 ~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~ 131 (447)
..+-.|+++.||||..
T Consensus 270 --------------------------~~~~~~~~lrGNHE~~ 285 (477)
T 1wao_1 270 --------------------------LYPDHFHLLRGNHETD 285 (477)
T ss_dssp --------------------------HSTTTEEEECCTTSSH
T ss_pred --------------------------hCCCceEeecCCccHH
Confidence 1245799999999974
No 49
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Probab=97.53 E-value=0.00014 Score=72.37 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=54.2
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCccee
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~ 92 (447)
++|.+++|+|-- +..|.++++.+.....|-+++.||+.|+..-|.++ +.+|..+..
T Consensus 57 ~~i~viGDIHG~------------~~~L~~ll~~~g~~~~~~~vflGD~VDRG~~s~ev----l~lL~~lk~-------- 112 (330)
T 1fjm_A 57 APLKICGDIHGQ------------YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLET----ICLLLAYKI-------- 112 (330)
T ss_dssp SSEEEECBCTTC------------HHHHHHHHHHHCSTTSSCEEECSCCSSSSSCHHHH----HHHHHHHHH--------
T ss_pred CceEEecCCCCC------------HHHHHHHHHHhCCCCcceEEeCCCcCCCCCChHHH----HHHHHHhhh--------
Confidence 689999999933 67788898888766778899999999998666654 445544320
Q ss_pred eechhhhcccccccccccCCCCCCCCCcEEEECCCCCCC
Q 013207 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (447)
Q Consensus 93 ~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~ 131 (447)
..+-.++++.||||..
T Consensus 113 -----------------------~~p~~v~~lrGNHE~~ 128 (330)
T 1fjm_A 113 -----------------------KYPENFFLLRGNHECA 128 (330)
T ss_dssp -----------------------HSTTTEEECCCTTSSH
T ss_pred -----------------------hcCCceEEecCCchHh
Confidence 1134699999999985
No 50
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A
Probab=97.47 E-value=0.00024 Score=70.04 Aligned_cols=51 Identities=20% Similarity=0.237 Sum_probs=38.8
Q ss_pred CCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCC-CEEEEcCCCCCCCCCCHHHH
Q 013207 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPSRSTL 72 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~v-D~VliaGDLfd~~~ps~~~l 72 (447)
...|||.+++|+|-. +..|.++++.+..... +.+++.||++|+..-|.+++
T Consensus 57 p~~~ri~viGDIHG~------------~~~L~~ll~~~g~~~~~~~~vflGD~VDRG~~s~evl 108 (315)
T 3h63_A 57 KETEKITVCGDTHGQ------------FYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVI 108 (315)
T ss_dssp CTTCEEEEECCCTTC------------HHHHHHHHHHHCCCBTTBCEEEESCCSSSSTTHHHHH
T ss_pred CCCceEEEEecCCCC------------HHHHHHHHHHhCCCCCCCEEEEeCCccCCCcChHHHH
Confidence 346899999999943 6678888887755434 45999999999986666654
No 51
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00032 Score=69.70 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=39.8
Q ss_pred CCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCC-CEEEEcCCCCCCCCCCHHHH
Q 013207 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPSRSTL 72 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~v-D~VliaGDLfd~~~ps~~~l 72 (447)
...|||.+++|+|-- +..|.++++.+..... +.+++.||++|+..-|.+++
T Consensus 61 ~~~~ri~viGDIHG~------------~~~L~~ll~~~g~~~~~~~~vflGD~VDRG~~s~evl 112 (335)
T 3icf_A 61 TPDVKISVCGDTHGQ------------FYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVA 112 (335)
T ss_dssp STTCEEEEECCCTTC------------HHHHHHHHHHHCCCBTTEEEEECSCCSSSSTTHHHHH
T ss_pred ccCceEEEEecCCCC------------HHHHHHHHHHcCCCCCCcEEEEeCCccCCCcChHHHH
Confidence 367999999999954 6678888887755444 45999999999987666654
No 52
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*
Probab=97.40 E-value=0.00025 Score=69.47 Aligned_cols=72 Identities=18% Similarity=0.190 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCccee
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~ 92 (447)
++|.+++|+|-- +..|.++++.+.....+.+++.||++|+..-|.+++ .+|..+..
T Consensus 56 ~~i~viGDIHG~------------~~~L~~ll~~~g~~~~~~~vfLGD~VDrG~~s~evl----~lL~~lk~-------- 111 (299)
T 3e7a_A 56 APLKICGDIHGQ------------YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETI----CLLLAYKI-------- 111 (299)
T ss_dssp SSEEEECBCTTC------------HHHHHHHHHHHCSTTSSCEEECSCCSSSSSCHHHHH----HHHHHHHH--------
T ss_pred CCEEEEecCCCC------------HHHHHHHHHHhCCCCCccEEeCCcccCCCCCcHHHH----HHHHHHHh--------
Confidence 579999999953 677889998887777888999999999987666654 44443320
Q ss_pred eechhhhcccccccccccCCCCCCCCCcEEEECCCCCCC
Q 013207 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (447)
Q Consensus 93 ~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~ 131 (447)
...-.++++.||||..
T Consensus 112 -----------------------~~p~~v~~lrGNHE~~ 127 (299)
T 3e7a_A 112 -----------------------KYPENFFLLRGNHECA 127 (299)
T ss_dssp -----------------------HSTTTEEECCCTTSSH
T ss_pred -----------------------hCCCcEEEEecCchhh
Confidence 1233599999999975
No 53
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=97.31 E-value=0.00088 Score=69.40 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=33.5
Q ss_pred CCceEEEEEcCCCCCCCCCcccccccHHHHHHH-HH-------HHHHHcCCCEEEEcCCCCCCC
Q 013207 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEE-IC-------SIAEQKEVDFVLLGGDLFHEN 65 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~~r~~d~~~~fee-il-------~~a~~~~vD~VliaGDLfd~~ 65 (447)
...-+|+.+||+|+|..... ....++.|-+ +. +.....++..||+|||+++..
T Consensus 198 ~~~~~ialVSGL~igs~~~~---~~~~~~ll~d~L~G~~g~~~~~~~as~I~rlIIAGn~v~~~ 258 (476)
T 3e0j_A 198 DTDRFVLLVSGLGLGGGGGE---SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHS 258 (476)
T ss_dssp SSCCEEEEECCCCBTSSCHH---HHHHHHHHHHHHHTCSSCHHHHHHHTTEEEEEEESCSBCC-
T ss_pred CCCCEEEEECCcccCCCccc---chHHHHHHHHHHcCCCCCccccchhhceeEEEEECCccccc
Confidence 34579999999999975311 1122333322 22 123356799999999999885
No 54
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A
Probab=97.27 E-value=0.00043 Score=69.29 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=39.8
Q ss_pred eEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHH
Q 013207 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72 (447)
Q Consensus 13 mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l 72 (447)
++|.+++|+|-- +..|.++++.+.....|.+++.||++|+..-|.+++
T Consensus 70 ~pi~ViGDIHG~------------~~dL~~ll~~~g~~~~~~~vfLGD~VDRG~~s~Evl 117 (357)
T 3ll8_A 70 APVTVCGDIHGQ------------FFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECV 117 (357)
T ss_dssp SSEEEECCCTTC------------HHHHHHHHHHHCCTTTCCEEECSCCSSSSTTHHHHH
T ss_pred ccceeeccCCCC------------HHHHHHHHHhcCCCCCcEEEECCCccCCCcChHHHH
Confidence 689999999953 567888888887777899999999999987666654
No 55
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Probab=97.24 E-value=0.00046 Score=72.03 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=53.8
Q ss_pred ceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcce
Q 013207 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (447)
Q Consensus 12 ~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~ 91 (447)
.++|.+++|+|-- +..|.++++.+.....|.+|+.||++|+..-|.+++ .+|..+..
T Consensus 82 ~~pI~VIGDIHGq------------~~dL~~LL~~~g~p~~d~yVFLGDyVDRGp~S~Evl----~lL~aLk~------- 138 (521)
T 1aui_A 82 DAPVTVCGDIHGQ------------FFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECV----LYLWALKI------- 138 (521)
T ss_dssp CSSEEEECCCTTC------------HHHHHHHHHHHCCTTTCCEEECSCCSSSSSCHHHHH----HHHHHHHH-------
T ss_pred ccceeeccCCCCC------------HHHHHHHHHhcCCCCcceEEEcCCcCCCCCCHHHHH----HHHHHHhh-------
Confidence 3789999999943 667888888665556789999999999987666654 44444320
Q ss_pred eeechhhhcccccccccccCCCCCCCCCcEEEECCCCCCC
Q 013207 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (447)
Q Consensus 92 ~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~GNHD~~ 131 (447)
...-.++++.||||..
T Consensus 139 ------------------------~~P~~v~lLRGNHE~~ 154 (521)
T 1aui_A 139 ------------------------LYPKTLFLLRGNHECR 154 (521)
T ss_dssp ------------------------HSTTTEEECCCTTSSH
T ss_pred ------------------------hCCCeEEEecCCccHH
Confidence 1133599999999985
No 56
>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase; HET: PE5; 1.93A {Bacillus subtilis}
Probab=95.31 E-value=0.018 Score=60.74 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=30.0
Q ss_pred CceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCC
Q 013207 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHEN 65 (447)
Q Consensus 11 ~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~ 65 (447)
..+||+++||.+..... +.++..+. +.++|+||+.||.+-..
T Consensus 115 ~~~rfa~~sc~~~~~g~---------~~~~~~ia----~~~~D~vlhlGD~iY~d 156 (527)
T 2yeq_A 115 PQMTFAFASCQQYEHGY---------YTAYKHMA----KEKLDLVFHLGDYIYEY 156 (527)
T ss_dssp CCEEEEEECCCCGGGCC---------CHHHHHHT----TSCCSEEEECSCSSCCC
T ss_pred CCeEEEEEecCCCCCCc---------cHHHHHHH----hcCCCEEEecCCcccCC
Confidence 57999999999863211 23444443 47999999999998544
No 57
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.04 Score=56.81 Aligned_cols=51 Identities=12% Similarity=0.258 Sum_probs=41.4
Q ss_pred CCceEEEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCCC
Q 013207 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK-EVDFVLLGGDLFHENKP 67 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~~r~~d~~~~feeil~~a~~~-~vD~VliaGDLfd~~~p 67 (447)
...++|+++|.-+-....- .|.-|+++++.+.++ +||++|+.|.+.|...|
T Consensus 145 ~~~l~ivvAsGPyT~sdnl-------~yepL~~Ll~~v~~~~kPdvLIL~GPFvD~~hp 196 (460)
T 3flo_A 145 GSSLKVIVTCGPYFANDNF-------SLELLQEFIDSINNEVKPHVLIMFGPFIDITHP 196 (460)
T ss_dssp SSCEEEEEEESCCSCSSCC-------CCHHHHHHHHHCCCCCCCSEEEEESCSSBTTCH
T ss_pred CCCcEEEEEeCCccCCCcc-------ChHHHHHHHHHHHhccCCCEEEEecCcccccCc
Confidence 3679999999988765321 257789999999885 89999999999998754
No 58
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=63.21 E-value=15 Score=34.17 Aligned_cols=46 Identities=17% Similarity=0.359 Sum_probs=31.0
Q ss_pred HHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEECC
Q 013207 47 AEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHG 126 (447)
Q Consensus 47 a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I~G 126 (447)
+.+.+.|+|+++| +.....+.+..+++.+++ ..+|++.-+|
T Consensus 32 ~~~~GtDaI~vGg----s~gvt~~~~~~~v~~ik~-----------------------------------~~~Piil~p~ 72 (235)
T 3w01_A 32 ICMSQTDAIMIGG----TDDVTEDNVIHLMSKIRR-----------------------------------YPLPLVLEIS 72 (235)
T ss_dssp HHTSSCSEEEECC----SSCCCHHHHHHHHHHHTT-----------------------------------SCSCEEEECC
T ss_pred HHHcCCCEEEECC----cCCcCHHHHHHHHHHhcC-----------------------------------cCCCEEEecC
Confidence 4588999999999 222344444444444443 3789999999
Q ss_pred CCCCC
Q 013207 127 NHDDP 131 (447)
Q Consensus 127 NHD~~ 131 (447)
|.+.-
T Consensus 73 ~~~~~ 77 (235)
T 3w01_A 73 NIESV 77 (235)
T ss_dssp CSTTC
T ss_pred CHHHh
Confidence 98653
No 59
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=62.91 E-value=14 Score=30.32 Aligned_cols=19 Identities=53% Similarity=0.788 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCCCEEEEc
Q 013207 40 FEEICSIAEQKEVDFVLLG 58 (447)
Q Consensus 40 feeil~~a~~~~vD~Vlia 58 (447)
.++|++.|.+.++|+|+++
T Consensus 98 ~~~I~~~a~~~~~dliV~G 116 (150)
T 3tnj_A 98 REEIIRIAEQENVDLIVVG 116 (150)
T ss_dssp HHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 3677777777788887776
No 60
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=56.35 E-value=14 Score=34.23 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=31.8
Q ss_pred HHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcceeeechhhhcccccccccccCCCCCCCCCcEEEE
Q 013207 45 SIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSI 124 (447)
Q Consensus 45 ~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~~~ipV~~I 124 (447)
+.+.+.+.|+|+++| +.....+.+..+++.+++ ..+|++.-
T Consensus 25 ~~~~~~GtD~i~vGG----s~gvt~~~~~~~v~~ik~-----------------------------------~~~Pvvlf 65 (228)
T 3vzx_A 25 EILCESGTDAVIIGG----SDGVTEDNVLRMMSKVRR-----------------------------------FLVPCVLE 65 (228)
T ss_dssp HHHHTSSCSEEEECC----CSCCCHHHHHHHHHHHTT-----------------------------------SSSCEEEE
T ss_pred HHHHHcCCCEEEECC----cCCCCHHHHHHHHHHhhc-----------------------------------cCCCEEEe
Confidence 334578999999999 222334444444444443 37899999
Q ss_pred CCCCCCC
Q 013207 125 HGNHDDP 131 (447)
Q Consensus 125 ~GNHD~~ 131 (447)
+||++.-
T Consensus 66 p~~~~~v 72 (228)
T 3vzx_A 66 VSAIEAI 72 (228)
T ss_dssp CSCGGGC
T ss_pred CCCHHHc
Confidence 9998653
No 61
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=55.94 E-value=14 Score=30.32 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=32.0
Q ss_pred CCCCCceEEEEEcCCCCCCCC-------CcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 013207 7 EDIANTVRILVATDCHLGYME-------KDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFH 63 (447)
Q Consensus 7 ~~~~~~mrILh~SD~HLG~~~-------~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd 63 (447)
.....|||||++.|-..-... .+....-......+++++.+.+..+|+||+--++-+
T Consensus 15 ~~~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~ 78 (150)
T 4e7p_A 15 VPRGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPV 78 (150)
T ss_dssp -----CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSS
T ss_pred CCCCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCC
Confidence 334568999999886542210 110011111234577788888899999998766654
No 62
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=55.22 E-value=37 Score=28.12 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=10.0
Q ss_pred CCCcEEEECCCC
Q 013207 117 VGLPVFSIHGNH 128 (447)
Q Consensus 117 ~~ipV~~I~GNH 128 (447)
..+||++++..|
T Consensus 150 ~~~pVlvv~~~~ 161 (162)
T 1mjh_A 150 SNKPVLVVKRKN 161 (162)
T ss_dssp CCSCEEEECCCC
T ss_pred CCCCEEEEeCCC
Confidence 579999998765
No 63
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=52.80 E-value=27 Score=28.56 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=33.2
Q ss_pred CCCCCceEEEEEcCCCCCCCC-----CcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 013207 7 EDIANTVRILVATDCHLGYME-----KDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFH 63 (447)
Q Consensus 7 ~~~~~~mrILh~SD~HLG~~~-----~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd 63 (447)
.....++|||++.|--.-... ......-......+++++.+.+..+|+||+-=++-+
T Consensus 9 ~~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~ 70 (153)
T 3hv2_A 9 ATVTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQ 70 (153)
T ss_dssp CCCCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSS
T ss_pred hhccCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCCc
Confidence 444567899999886532110 000000111223567777888899999999766654
No 64
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=51.90 E-value=5.8 Score=35.84 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=22.6
Q ss_pred cCCcEEEeccccCcccCCcccCCCCceEeccCCcc
Q 013207 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSV 278 (447)
Q Consensus 244 ~~~D~v~~GH~H~~~i~pq~~~~~~~~i~ypGS~~ 278 (447)
.+.|+|++||+|.... ... .+..++.|||..
T Consensus 177 ~~~~~vv~GHth~~~~--~~~--~~~~~in~Gs~~ 207 (221)
T 1g5b_A 177 KGADTFIFGHTPAVKP--LKF--ANQMYIDTGAVF 207 (221)
T ss_dssp BTSSEEEECSSCCSSC--EEE--TTEEECCCCHHH
T ss_pred cCCCEEEECCCCCccc--eee--CCEEEEECCCCc
Confidence 4579999999998653 222 346788999853
No 65
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=49.28 E-value=49 Score=28.61 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCC
Q 013207 38 EAFEEICSIAEQKEVDFVLLGGDL 61 (447)
Q Consensus 38 ~~feeil~~a~~~~vD~VliaGDL 61 (447)
..+.+.+..+.+.++|+||.+|=+
T Consensus 53 ~~i~~al~~a~~~~~DlVittGG~ 76 (164)
T 3pzy_A 53 SPVGEALRKAIDDDVDVILTSGGT 76 (164)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCC
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 677777777766689999999976
No 66
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=48.25 E-value=32 Score=30.23 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=21.0
Q ss_pred ccHHHHHHHHHHHHHHc-CCCEEEEcCCC
Q 013207 34 HDSFEAFEEICSIAEQK-EVDFVLLGGDL 61 (447)
Q Consensus 34 ~d~~~~feeil~~a~~~-~vD~VliaGDL 61 (447)
.|....+.+.+..+.++ ++|+||.+|=+
T Consensus 63 ~Dd~~~I~~al~~a~~~~~~DlVittGG~ 91 (178)
T 2pjk_A 63 PDDKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp CSCHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 35566777777777665 59999999965
No 67
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=48.03 E-value=42 Score=28.15 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=11.3
Q ss_pred CCCcEEEECCCCCCC
Q 013207 117 VGLPVFSIHGNHDDP 131 (447)
Q Consensus 117 ~~ipV~~I~GNHD~~ 131 (447)
..+||++++...+..
T Consensus 147 ~~~PVlvv~~~~~~~ 161 (170)
T 2dum_A 147 TKKPVLIIKEVDENE 161 (170)
T ss_dssp CSSCEEEECCCCCC-
T ss_pred CCCCEEEEccCCccc
Confidence 579999999776554
No 68
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=45.85 E-value=35 Score=27.51 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCCEEEEcCC
Q 013207 40 FEEICSIAEQKEVDFVLLGGD 60 (447)
Q Consensus 40 feeil~~a~~~~vD~VliaGD 60 (447)
-+.|++.|.+.++|+|+++--
T Consensus 91 ~~~I~~~a~~~~~dliV~G~~ 111 (141)
T 1jmv_A 91 GQVLSDAIEQYDVDLLVTGHH 111 (141)
T ss_dssp HHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEeCC
Confidence 478888999999999888855
No 69
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=43.75 E-value=63 Score=25.90 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCCCEEEEcC
Q 013207 39 AFEEICSIAEQKEVDFVLLGG 59 (447)
Q Consensus 39 ~feeil~~a~~~~vD~VliaG 59 (447)
..++|++.|.+.++|+|+++-
T Consensus 94 ~~~~I~~~a~~~~~dliV~G~ 114 (143)
T 3fdx_A 94 PKDKILALAKSLPADLVIIAS 114 (143)
T ss_dssp HHHHHHHHHHHTTCSEEEEES
T ss_pred hHHHHHHHHHHhCCCEEEEeC
Confidence 357788888888899888875
No 70
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=42.38 E-value=50 Score=26.46 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCCCEEEEc
Q 013207 40 FEEICSIAEQKEVDFVLLG 58 (447)
Q Consensus 40 feeil~~a~~~~vD~Vlia 58 (447)
.+.|++.|.+.++|+|+++
T Consensus 88 ~~~I~~~a~~~~~dliV~G 106 (137)
T 2z08_A 88 AEAILQAARAEKADLIVMG 106 (137)
T ss_dssp HHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 4667777777778877776
No 71
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=39.65 E-value=48 Score=26.72 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=12.5
Q ss_pred HHHHHH-HHHHcCCCEEEEc
Q 013207 40 FEEICS-IAEQKEVDFVLLG 58 (447)
Q Consensus 40 feeil~-~a~~~~vD~Vlia 58 (447)
.++|++ .|.+.++|+|+++
T Consensus 96 ~~~I~~~~a~~~~~dliV~G 115 (146)
T 3s3t_A 96 KHTIEDYAKQHPEIDLIVLG 115 (146)
T ss_dssp HHHHHHHHHHSTTCCEEEEE
T ss_pred HHHHHHHHHhhcCCCEEEEC
Confidence 456666 6666677776665
No 72
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=37.77 E-value=58 Score=26.21 Aligned_cols=19 Identities=32% Similarity=0.600 Sum_probs=12.0
Q ss_pred HHHHHHHHHHcCCCEEEEc
Q 013207 40 FEEICSIAEQKEVDFVLLG 58 (447)
Q Consensus 40 feeil~~a~~~~vD~Vlia 58 (447)
-++|++.|.+.++|+|+++
T Consensus 99 ~~~I~~~a~~~~~dliV~G 117 (147)
T 3hgm_A 99 SRTIVRFARKRECDLVVIG 117 (147)
T ss_dssp HHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHhCCCEEEEe
Confidence 3556666666666666665
No 73
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.11 E-value=49 Score=25.94 Aligned_cols=21 Identities=10% Similarity=0.259 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCCEEEEcCC
Q 013207 40 FEEICSIAEQKEVDFVLLGGD 60 (447)
Q Consensus 40 feeil~~a~~~~vD~VliaGD 60 (447)
+++++..+++.++-+|+++.|
T Consensus 20 ~~~v~kai~~gka~lViiA~D 40 (99)
T 3j21_Z 20 SNETIRLAKTGGAKLIIVAKN 40 (99)
T ss_dssp HHHHHHHHHHTCCSEEEEECC
T ss_pred HHHHHHHHHcCCccEEEEeCC
Confidence 467788888899999999999
No 74
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=37.09 E-value=1.2e+02 Score=26.44 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHHHHHc-CCCEEEEcCCC
Q 013207 35 DSFEAFEEICSIAEQK-EVDFVLLGGDL 61 (447)
Q Consensus 35 d~~~~feeil~~a~~~-~vD~VliaGDL 61 (447)
|....+.+.+..+.+. ++|+||.+|=+
T Consensus 51 Dd~~~I~~~l~~~~~~~~~DlVittGG~ 78 (178)
T 2pbq_A 51 DERDLIEKTLIELADEKGCSLILTTGGT 78 (178)
T ss_dssp SCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4456677777776664 89999999966
No 75
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=36.81 E-value=46 Score=28.03 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=11.4
Q ss_pred CCCcEEEECCCCCCC
Q 013207 117 VGLPVFSIHGNHDDP 131 (447)
Q Consensus 117 ~~ipV~~I~GNHD~~ 131 (447)
..+||++|+.+...+
T Consensus 154 a~~pVlvv~~~~~~~ 168 (175)
T 2gm3_A 154 AECPVMTIKRNADET 168 (175)
T ss_dssp CSSCEEEEECCGGGS
T ss_pred CCCCEEEEcCCcCCC
Confidence 579999999775443
No 76
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=36.41 E-value=76 Score=31.31 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHHHHcCCCEEEEc-------CCCCCCCCCCHHHHHHHHHHHHH
Q 013207 35 DSFEAFEEICSIAEQKEVDFVLLG-------GDLFHENKPSRSTLVKAIEILRR 81 (447)
Q Consensus 35 d~~~~feeil~~a~~~~vD~Vlia-------GDLfd~~~ps~~~l~~~~~~L~~ 81 (447)
+...+|++++..+.+.+||+||++ ||=.-.-+-+.+...++.+.+++
T Consensus 275 ~yl~~~~~~l~~l~~f~PdlIvvsaG~Da~~~Dplg~l~lt~~~~~~~~~~l~~ 328 (362)
T 3men_A 275 AFFERVDDALRELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGA 328 (362)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEEECSTTBTTCTTCCBCBCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECcccCcCCCCCCCccCCHHHHHHHHHHHHh
Confidence 445789999998889999998874 44333334566666666565554
No 77
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=36.35 E-value=80 Score=26.14 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=18.8
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCC
Q 013207 41 EEICSIAEQKEVDFVLLGGDLFH 63 (447)
Q Consensus 41 eeil~~a~~~~vD~VliaGDLfd 63 (447)
.+++..++..++.+|++|.|.-.
T Consensus 30 ~~v~Kai~~gka~LViiA~D~~p 52 (126)
T 2xzm_U 30 HEVLRTIEAKQALFVCVAEDCDQ 52 (126)
T ss_dssp HHHHHHHHHTCCSEEEEESSCCS
T ss_pred HHHHHHHHcCCceEEEEeCCCCh
Confidence 55667778889999999999854
No 78
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=35.42 E-value=39 Score=27.21 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCCEEEEcCCC
Q 013207 40 FEEICSIAEQKEVDFVLLGGDL 61 (447)
Q Consensus 40 feeil~~a~~~~vD~VliaGDL 61 (447)
+++++..++..++.+|++|.|.
T Consensus 26 ~~~v~kai~~gka~lViiA~D~ 47 (110)
T 3cpq_A 26 SKRTIKFVKHGEGKLVVLAGNI 47 (110)
T ss_dssp HHHHHHHHHTTCCSEEEECTTC
T ss_pred HHHHHHHHHcCCceEEEEeCCC
Confidence 4667777788899999999998
No 79
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=34.98 E-value=1.1e+02 Score=23.86 Aligned_cols=54 Identities=13% Similarity=-0.035 Sum_probs=30.0
Q ss_pred CCceEEEEEcCCCCCCCC-----CcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 013207 10 ANTVRILVATDCHLGYME-----KDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFH 63 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~-----~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd 63 (447)
..+||||++.|-..-... ......-......+++++.+.+..+|+||+--++-+
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~ 63 (137)
T 3hdg_A 5 EVALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPK 63 (137)
T ss_dssp --CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSS
T ss_pred ccccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCC
Confidence 356899999886432110 000000011223466777777889999999766654
No 80
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=34.51 E-value=66 Score=28.51 Aligned_cols=27 Identities=19% Similarity=0.081 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHHHHcCCCEEEEcCCC
Q 013207 35 DSFEAFEEICSIAEQKEVDFVLLGGDL 61 (447)
Q Consensus 35 d~~~~feeil~~a~~~~vD~VliaGDL 61 (447)
|....+.+.+..+.+.++|+||.+|=+
T Consensus 73 Dd~~~I~~al~~a~~~~~DlVIttGGt 99 (185)
T 3rfq_A 73 ADEVDIRNALNTAVIGGVDLVVSVGGT 99 (185)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 445667777777666789999999976
No 81
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=33.36 E-value=63 Score=26.38 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=29.1
Q ss_pred CCceEEEEEcCCCCCCCCC-------cccccccHHHHHHHHHHHHHHcCCCEEEE
Q 013207 10 ANTVRILVATDCHLGYMEK-------DEIRRHDSFEAFEEICSIAEQKEVDFVLL 57 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~-------~~~r~~d~~~~feeil~~a~~~~vD~Vli 57 (447)
...||||++=|-..-...- +..- -.....-++.++.+.+..+|+||+
T Consensus 6 ~r~~rILiVdD~~~~~~~l~~~L~~~G~~v-~~~a~~g~eAl~~~~~~~~Dlvll 59 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIAMLIEDTLCELGHEV-AATASRMQEALDIARKGQFDIAII 59 (123)
T ss_dssp CCCCCEEEESSSTTTSHHHHHHHHHHCCCC-CBCSCCHHHHHHHHHHCCSSEEEE
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEE-EEEECCHHHHHHHHHhCCCCEEEE
Confidence 3568999999987643210 1100 011123467778888999999988
No 82
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=33.19 E-value=95 Score=24.42 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHHHHcCCCEEEEc
Q 013207 35 DSFEAFEEICSIAEQKEVDFVLLG 58 (447)
Q Consensus 35 d~~~~feeil~~a~~~~vD~Vlia 58 (447)
..-..++++.+++.+++|+.|+++
T Consensus 35 ~~~~~~~~l~~li~e~~v~~iVvG 58 (98)
T 1iv0_A 35 TLEEDVEALLDFVRREGLGKLVVG 58 (98)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEe
Confidence 445678999999999999998887
No 83
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=30.80 E-value=43 Score=26.84 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=10.9
Q ss_pred HHHHHHHHHcCCCEEEEc
Q 013207 41 EEICSIAEQKEVDFVLLG 58 (447)
Q Consensus 41 eeil~~a~~~~vD~Vlia 58 (447)
++|++.|.+.++|+|+++
T Consensus 99 ~~I~~~a~~~~~dliV~G 116 (138)
T 1q77_A 99 EEVKKFVEGKGYELVVWA 116 (138)
T ss_dssp HHHHHHHTTSCCSEEEEC
T ss_pred HHHHHHHHhcCCCEEEEe
Confidence 455666666666666665
No 84
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=30.05 E-value=2.9e+02 Score=25.74 Aligned_cols=66 Identities=32% Similarity=0.364 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcceeeechhhhcccccccccccCCCCCC
Q 013207 37 FEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFN 116 (447)
Q Consensus 37 ~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~ 116 (447)
-.+-..++++|.+.++||+++.+ .+|....=.++-++|. .
T Consensus 50 ~~~~~~~~~~~~~~~pDfvI~is-----PN~a~PGP~~ARE~l~-----------------------------------~ 89 (283)
T 1qv9_A 50 EAAVEMALDIAEDFEPDFIVYGG-----PNPAAPGPSKAREMLA-----------------------------------D 89 (283)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEC-----SCTTSHHHHHHHHHHH-----------------------------------T
T ss_pred HHHHHHhhhhhhhcCCCEEEEEC-----CCCCCCCchHHHHHHH-----------------------------------h
Confidence 34556677888999999999876 3333333334556665 3
Q ss_pred CCCcEEEECCCCCCCCCCCcchhhhhhhcCCce
Q 013207 117 VGLPVFSIHGNHDDPAGVDNLSAVDILSACNLV 149 (447)
Q Consensus 117 ~~ipV~~I~GNHD~~~~~~~~~~~d~L~~~g~v 149 (447)
.++|+++|. |.|... ..+-|+..|+-
T Consensus 90 ~~iP~IvI~---D~p~~K----~kd~l~~~g~G 115 (283)
T 1qv9_A 90 SEYPAVIIG---DAPGLK----VKDEMEEQGLG 115 (283)
T ss_dssp SSSCEEEEE---EGGGGG----GHHHHHHTTCE
T ss_pred CCCCEEEEc---CCcchh----hHHHHHhcCCc
Confidence 689999995 666432 45777877764
No 85
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=30.00 E-value=94 Score=23.88 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCCCEEEEc
Q 013207 40 FEEICSIAEQKEVDFVLLG 58 (447)
Q Consensus 40 feeil~~a~~~~vD~Vlia 58 (447)
.+++++.+.+.++|+|++-
T Consensus 35 ~~~al~~~~~~~~dlii~D 53 (120)
T 3f6p_A 35 GNEAVEMVEELQPDLILLD 53 (120)
T ss_dssp HHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHhhCCCCEEEEe
Confidence 4667777788899999883
No 86
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=29.24 E-value=82 Score=30.80 Aligned_cols=47 Identities=9% Similarity=-0.045 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHHHHcCCCEEEEc-------CCCCCCCCCCHHHHHHHHHHHHH
Q 013207 35 DSFEAFEEICSIAEQKEVDFVLLG-------GDLFHENKPSRSTLVKAIEILRR 81 (447)
Q Consensus 35 d~~~~feeil~~a~~~~vD~Vlia-------GDLfd~~~ps~~~l~~~~~~L~~ 81 (447)
+...+|++++..+.+.+||+||++ ||=.-.-+-+.+...++.+.+++
T Consensus 257 ~y~~~~~~~l~~l~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~ 310 (341)
T 3q9b_A 257 VWGEALTDSLKRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAA 310 (341)
T ss_dssp HHHHHHHHHHHHHHHHTCSCEEEEECCTTBTTCTTCCCBBCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEeCCccccCCCCCCCccCCHHHHHHHHHHHHH
Confidence 445789999998888999998874 44333333456666666666654
No 87
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=28.83 E-value=75 Score=28.91 Aligned_cols=52 Identities=13% Similarity=0.058 Sum_probs=36.8
Q ss_pred ccccccHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCCCCCHHHHHHHHHHHHHhh
Q 013207 30 EIRRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRSTLVKAIEILRRHC 83 (447)
Q Consensus 30 ~~r~~d~~~~feeil~~a~~~~vD~Vli-aGDLfd~~~ps~~~l~~~~~~L~~l~ 83 (447)
+...+...+.+++.++.|.+.+++.|++ +| ........+...++.+.|++++
T Consensus 85 ~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g--~~~~~~~~~~~~~~~~~l~~l~ 137 (269)
T 3ngf_A 85 SGREQEFRDNVDIALHYALALDCRTLHAMSG--ITEGLDRKACEETFIENFRYAA 137 (269)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCEEECCBC--BCTTSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCEEEEccC--CCCCCCHHHHHHHHHHHHHHHH
Confidence 3445567788999999999999998877 77 3333344456666777777764
No 88
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=28.35 E-value=83 Score=26.10 Aligned_cols=9 Identities=33% Similarity=0.560 Sum_probs=6.8
Q ss_pred CCCcEEEEC
Q 013207 117 VGLPVFSIH 125 (447)
Q Consensus 117 ~~ipV~~I~ 125 (447)
..+||++|.
T Consensus 147 a~~PVLvVr 155 (155)
T 3dlo_A 147 ANKPVICIK 155 (155)
T ss_dssp CSSCEEEEC
T ss_pred CCCCEEEeC
Confidence 578998873
No 89
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=28.00 E-value=1.8e+02 Score=23.19 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=30.8
Q ss_pred CceEEEEEcCCCCCCCC--------CcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 013207 11 NTVRILVATDCHLGYME--------KDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFH 63 (447)
Q Consensus 11 ~~mrILh~SD~HLG~~~--------~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd 63 (447)
.++|||++.|-..-... .+. .-.......+++++.+.+..+|+||+--++-+
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~-~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~ 63 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGY-AVVAEAADAGEAYRLYRETTPDIVVMDLTLPG 63 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTE-EEEEEESSHHHHHHHHHTTCCSEEEECSCCSS
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCc-EEEEEeCCHHHHHHHHhcCCCCEEEEecCCCC
Confidence 46899988886532110 010 00001233567777888889999999766654
No 90
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=27.42 E-value=55 Score=32.23 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 013207 37 FEAFEEICSIAEQKEVDFVLLGGDLFH 63 (447)
Q Consensus 37 ~~~feeil~~a~~~~vD~VliaGDLfd 63 (447)
-..+..+-+..++++||+|++.||-..
T Consensus 80 ~~~~~~l~~~l~~~kPD~Vlv~gd~~~ 106 (385)
T 4hwg_A 80 GLVIEKVDEVLEKEKPDAVLFYGDTNS 106 (385)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESCSGG
T ss_pred HHHHHHHHHHHHhcCCcEEEEECCchH
Confidence 356777788888999999999999764
No 91
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=27.32 E-value=2.1e+02 Score=22.20 Aligned_cols=52 Identities=10% Similarity=-0.054 Sum_probs=30.4
Q ss_pred CCceEEEEEcCCCCCCCC-------CcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 013207 10 ANTVRILVATDCHLGYME-------KDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFH 63 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~-------~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd 63 (447)
..++|||++.|-..-... .+. .-......+++++.+.+..+|+|++--++-+
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~ 63 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAVKTILSDAGF--HIISADSGGQCIDLLKKGFSGVVLLDIMMPG 63 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTCCCEEEEEESCCSS
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCe--EEEEeCCHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 456899998887532110 000 0011223467778888889999998766644
No 92
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=27.27 E-value=1.5e+02 Score=22.76 Aligned_cols=25 Identities=8% Similarity=-0.158 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCC
Q 013207 39 AFEEICSIAEQKEVDFVLLGGDLFH 63 (447)
Q Consensus 39 ~feeil~~a~~~~vD~VliaGDLfd 63 (447)
..+++++.+.+..+|+|++-=++-+
T Consensus 35 ~~~~a~~~l~~~~~dlvi~d~~l~~ 59 (133)
T 3nhm_A 35 DGASGLQQALAHPPDVLISDVNMDG 59 (133)
T ss_dssp SHHHHHHHHHHSCCSEEEECSSCSS
T ss_pred CHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 3466777788899999999666544
No 93
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=26.74 E-value=1.8e+02 Score=22.56 Aligned_cols=53 Identities=13% Similarity=-0.069 Sum_probs=29.4
Q ss_pred CCceEEEEEcCCCCCCCC--------CcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 013207 10 ANTVRILVATDCHLGYME--------KDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFH 63 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~--------~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd 63 (447)
..++|||++.|...-... .+. ..-......+++++.+.+..+|+|++--++-+
T Consensus 6 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~ 66 (143)
T 3cnb_A 6 KNDFSILIIEDDKEFADMLTQFLENLFPY-AKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVG 66 (143)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHCTT-CEEEEECSHHHHHHHHHHTCCSEEEEETTCTT
T ss_pred cCCceEEEEECCHHHHHHHHHHHHhccCc-cEEEEECCHHHHHHHHHhcCCCEEEEecccCC
Confidence 456899998886532110 000 00111223466777778889999999777644
No 94
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=26.69 E-value=1e+02 Score=25.15 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCC
Q 013207 40 FEEICSIAEQKEVDFVLLGGDLFH 63 (447)
Q Consensus 40 feeil~~a~~~~vD~VliaGDLfd 63 (447)
..+++..++..++-+|++|+|.-.
T Consensus 25 ~~~v~kai~~gkakLViiA~D~~~ 48 (121)
T 2lbw_A 25 VKEVVKALRKGEKGLVVIAGDIWP 48 (121)
T ss_dssp HHHHHHHHHHSCCCEEEECTTCSC
T ss_pred HHHHHHHHHcCCceEEEEeCCCCH
Confidence 356777788899999999999854
No 95
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=25.80 E-value=1.5e+02 Score=22.80 Aligned_cols=52 Identities=8% Similarity=-0.112 Sum_probs=28.3
Q ss_pred CCceEEEEEcCCCCCCCC-------CcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 013207 10 ANTVRILVATDCHLGYME-------KDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFH 63 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~-------~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd 63 (447)
...+|||++.|--.-... .+.. -......+++++.+.+..+|+|++-=++-+
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~--v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~ 63 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGAT--TVLAADGVDALELLGGFTPDLMICDIAMPR 63 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCE--EEEESCHHHHHHHHTTCCCSEEEECCC---
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCce--EEEeCCHHHHHHHHhcCCCCEEEEecCCCC
Confidence 345799988886432110 0100 001123466777778889999998655543
No 96
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=25.64 E-value=1.8e+02 Score=22.88 Aligned_cols=54 Identities=7% Similarity=-0.017 Sum_probs=30.1
Q ss_pred CCceEEEEEcCCCCCCCCCccc-----ccccHHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 013207 10 ANTVRILVATDCHLGYMEKDEI-----RRHDSFEAFEEICSIAEQKEVDFVLLGGDLFH 63 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~~~~~-----r~~d~~~~feeil~~a~~~~vD~VliaGDLfd 63 (447)
..++|||++.|-..-...-... ..-......+++++.+.+..+|+||+--++-+
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~ 64 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPK 64 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCC
Confidence 4568999998875432110000 00011223466777777889999999766654
No 97
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=25.61 E-value=1.3e+02 Score=28.55 Aligned_cols=56 Identities=16% Similarity=0.084 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCC--HHHHHHHHHHHHHhhcCCCCcceeeechhhhcccccccccccCCCCCC
Q 013207 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPS--RSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFN 116 (447)
Q Consensus 39 ~feeil~~a~~~~vD~VliaGDLfd~~~ps--~~~l~~~~~~L~~l~~~~~~~~~~~lsd~~~~f~~~~~~~n~~d~~~~ 116 (447)
.+.++++.+.+.+.|+|+++ -+. .. .+.+..+++.+++.
T Consensus 54 ~~~~~~~~~~~sGtDai~VG---S~~--vt~~~~~~~~~v~~ik~~---------------------------------- 94 (286)
T 3vk5_A 54 EAVEKAAELTRLGFAAVLLA---STD--YESFESHMEPYVAAVKAA---------------------------------- 94 (286)
T ss_dssp HHHHHHHHHHHTTCSCEEEE---CSC--CSSHHHHHHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHHhcCCCEEEEc---cCC--CCcchHHHHHHHHHHHHh----------------------------------
Confidence 34556777778899999988 221 23 45566777888873
Q ss_pred CCCcEEE-EC---CCCCCCCC
Q 013207 117 VGLPVFS-IH---GNHDDPAG 133 (447)
Q Consensus 117 ~~ipV~~-I~---GNHD~~~~ 133 (447)
..+||+. -+ ||++.-+.
T Consensus 95 ~~lPvil~fPP~~g~~~~i~~ 115 (286)
T 3vk5_A 95 TPLPVVLHFPPRPGAGFPVVR 115 (286)
T ss_dssp CSSCEEEECCCBTTTBSCCCT
T ss_pred CCCCEEEECCCCCCCcccccc
Confidence 3799999 99 99977543
No 98
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=25.54 E-value=1.4e+02 Score=27.39 Aligned_cols=21 Identities=5% Similarity=0.110 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCCEEEEcC
Q 013207 39 AFEEICSIAEQKEVDFVLLGG 59 (447)
Q Consensus 39 ~feeil~~a~~~~vD~VliaG 59 (447)
..+.|++.|.+.++|+|+++-
T Consensus 77 ~~~~i~~~a~~~~~dliV~G~ 97 (290)
T 3mt0_A 77 LHQTIIAEQQAEGCGLIIKQH 97 (290)
T ss_dssp HHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEec
Confidence 357788888888899888874
No 99
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=25.02 E-value=2e+02 Score=22.89 Aligned_cols=56 Identities=14% Similarity=0.064 Sum_probs=31.6
Q ss_pred CCCCceEEEEEcCCCCCCCC-------CcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 013207 8 DIANTVRILVATDCHLGYME-------KDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFH 63 (447)
Q Consensus 8 ~~~~~mrILh~SD~HLG~~~-------~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd 63 (447)
......|||++.|...-... .+....-......+++++.+.+..+|+|++-=++-+
T Consensus 11 ~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~ 73 (152)
T 3eul_A 11 PQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPG 73 (152)
T ss_dssp ---CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTCSS
T ss_pred CCCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 34566899999886542211 010000111234567777788889999999766644
No 100
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=24.76 E-value=1.2e+02 Score=25.48 Aligned_cols=20 Identities=15% Similarity=0.307 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHcCCCEEEEc
Q 013207 39 AFEEICSIAEQKEVDFVLLG 58 (447)
Q Consensus 39 ~feeil~~a~~~~vD~Vlia 58 (447)
.++++.+++.+++|+.||++
T Consensus 41 ~~~~l~~li~e~~v~~iVvG 60 (138)
T 1nu0_A 41 DWNIIERLLKEWQPDEIIVG 60 (138)
T ss_dssp CHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEe
Confidence 36888889999999998887
No 101
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=24.53 E-value=2.1e+02 Score=21.01 Aligned_cols=24 Identities=4% Similarity=-0.202 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCC
Q 013207 40 FEEICSIAEQKEVDFVLLGGDLFH 63 (447)
Q Consensus 40 feeil~~a~~~~vD~VliaGDLfd 63 (447)
.+++++.+.+..+|+|++--++-+
T Consensus 34 ~~~~~~~l~~~~~dlii~d~~~~~ 57 (119)
T 2j48_A 34 GSTALDQLDLLQPIVILMAWPPPD 57 (119)
T ss_dssp HHHHHHHHHHHCCSEEEEECSTTC
T ss_pred HHHHHHHHHhcCCCEEEEecCCCC
Confidence 456667777789999998766643
No 102
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=24.42 E-value=2.3e+02 Score=21.54 Aligned_cols=23 Identities=9% Similarity=-0.013 Sum_probs=16.6
Q ss_pred HHHHHHHHHHc-CCCEEEEcCCCC
Q 013207 40 FEEICSIAEQK-EVDFVLLGGDLF 62 (447)
Q Consensus 40 feeil~~a~~~-~vD~VliaGDLf 62 (447)
.+++++.+.+. .+|+|++-=++-
T Consensus 38 ~~~a~~~l~~~~~~dlvi~d~~l~ 61 (132)
T 2rdm_A 38 GAKAIEMLKSGAAIDGVVTDIRFC 61 (132)
T ss_dssp HHHHHHHHHTTCCCCEEEEESCCS
T ss_pred HHHHHHHHHcCCCCCEEEEeeeCC
Confidence 46677777776 899998865553
No 103
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=24.31 E-value=2.5e+02 Score=21.74 Aligned_cols=21 Identities=5% Similarity=0.139 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCCEEEEcCC
Q 013207 40 FEEICSIAEQKEVDFVLLGGD 60 (447)
Q Consensus 40 feeil~~a~~~~vD~VliaGD 60 (447)
+++++..++..++.+|+++.|
T Consensus 21 ~~~v~kai~~gka~lViiA~D 41 (101)
T 1w41_A 21 ARKSIQYAKMGGAKLIIVARN 41 (101)
T ss_dssp HHHHHHHHHHTCCSEEEEETT
T ss_pred HHHHHHHHHcCCCcEEEEeCC
Confidence 467778888899999999999
No 104
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=24.22 E-value=1.9e+02 Score=22.60 Aligned_cols=49 Identities=10% Similarity=0.176 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCCCCCC-----CcccccccHHHHHHHHHHHHHHcCCCEEEEcC
Q 013207 11 NTVRILVATDCHLGYME-----KDEIRRHDSFEAFEEICSIAEQKEVDFVLLGG 59 (447)
Q Consensus 11 ~~mrILh~SD~HLG~~~-----~~~~r~~d~~~~feeil~~a~~~~vD~VliaG 59 (447)
.++|||++.|-..-... ......-......+++++.+.+..+|+|++--
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~ 56 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV 56 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC
Confidence 45788888876432110 00000001122346777788888999998854
No 105
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=24.08 E-value=2.5e+02 Score=25.59 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=36.5
Q ss_pred ccccccHHHHHHHHHHHHHHcCCCEEEEcC-CCCCCCCCCHHHHHHHHHHHHHhh
Q 013207 30 EIRRHDSFEAFEEICSIAEQKEVDFVLLGG-DLFHENKPSRSTLVKAIEILRRHC 83 (447)
Q Consensus 30 ~~r~~d~~~~feeil~~a~~~~vD~VliaG-DLfd~~~ps~~~l~~~~~~L~~l~ 83 (447)
+..++...+.+++.++.|.+.+++.|++.| +.+. .........++.+.|++++
T Consensus 100 ~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~~-~~~~~~~~~~~~~~l~~l~ 153 (295)
T 3cqj_A 100 DAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYDVYY-QEANNETRRRFRDGLKESV 153 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSCSS-SCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCc-CcCHHHHHHHHHHHHHHHH
Confidence 334455678899999999999999998864 3321 2234556666777777664
No 106
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=23.95 E-value=1.8e+02 Score=28.73 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=30.9
Q ss_pred cHHHHHHHHHH-HHHHcCCCEEEEc-------CCCCCCCCCCHHHHHHHHHHHHH
Q 013207 35 DSFEAFEEICS-IAEQKEVDFVLLG-------GDLFHENKPSRSTLVKAIEILRR 81 (447)
Q Consensus 35 d~~~~feeil~-~a~~~~vD~Vlia-------GDLfd~~~ps~~~l~~~~~~L~~ 81 (447)
+...+|++++. .+.+.+||+||+. ||=.-.-+-+.+...++.+.+++
T Consensus 231 ~yl~~~~~~l~p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l~~ 285 (376)
T 4a69_A 231 SYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKS 285 (376)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHHHH
Confidence 44578888776 5678899999863 45444444566666666665553
No 107
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=23.76 E-value=1.3e+02 Score=23.53 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=28.0
Q ss_pred ceEEEEEcCCCCCCCC-----CcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 013207 12 TVRILVATDCHLGYME-----KDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFH 63 (447)
Q Consensus 12 ~mrILh~SD~HLG~~~-----~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd 63 (447)
++|||++.|--.-... ... ..-......+++++.+.+..+|+|++-=++-+
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~ 58 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHHPDLVILDMDIIG 58 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHCCSEEEEETTC--
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 5788888775432110 000 01111223567777778889999999765544
No 108
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=23.51 E-value=2e+02 Score=23.13 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=30.4
Q ss_pred CCceEEEEEcCCCCCCCC-------CcccccccHHHHHHHHHHHHHHc--CCCEEEEcCCCCC
Q 013207 10 ANTVRILVATDCHLGYME-------KDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFH 63 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~-------~~~~r~~d~~~~feeil~~a~~~--~vD~VliaGDLfd 63 (447)
..++|||++.|...-... .+. .-.......+++++.+.+. .+|+||+-=++-+
T Consensus 34 ~~~~~Ilivdd~~~~~~~l~~~L~~~g~-~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~ 95 (157)
T 3hzh_A 34 GIPFNVLIVDDSVFTVKQLTQIFTSEGF-NIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPK 95 (157)
T ss_dssp TEECEEEEECSCHHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSS
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCC
Confidence 345799999886542210 010 0011223356677777777 8999998666644
No 109
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=23.43 E-value=2.4e+02 Score=21.97 Aligned_cols=50 Identities=16% Similarity=0.037 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCCCCCC-------CcccccccHHHHHHHHHHHHH--HcCCCEEEEcCCCCC
Q 013207 12 TVRILVATDCHLGYME-------KDEIRRHDSFEAFEEICSIAE--QKEVDFVLLGGDLFH 63 (447)
Q Consensus 12 ~mrILh~SD~HLG~~~-------~~~~r~~d~~~~feeil~~a~--~~~vD~VliaGDLfd 63 (447)
++|||++.|...-... .+.. -......++.++.+. ...+|+|++--++-+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~--v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~ 61 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNE--VLTASSSTEGLRIFTENCNSIDVVITDMKMPK 61 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCE--EEEESSHHHHHHHHHHTTTTCCEEEEESCCSS
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCce--EEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCC
Confidence 5788888886432110 0000 001123456666666 568999999766644
No 110
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=23.22 E-value=1.4e+02 Score=22.99 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=16.9
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCC
Q 013207 41 EEICSIAEQKEVDFVLLGGDLFH 63 (447)
Q Consensus 41 eeil~~a~~~~vD~VliaGDLfd 63 (447)
+++++.+.+..+|+|++-=++-+
T Consensus 36 ~~a~~~~~~~~~dlii~d~~l~~ 58 (134)
T 3f6c_A 36 GSAVQRVETLKPDIVIIDVDIPG 58 (134)
T ss_dssp TTHHHHHHHHCCSEEEEETTCSS
T ss_pred HHHHHHHHhcCCCEEEEecCCCC
Confidence 45666677789999998766644
No 111
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=22.61 E-value=1.6e+02 Score=25.12 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHH
Q 013207 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (447)
Q Consensus 39 ~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~ 81 (447)
..+++++.+++.++|+|.++.=+- .....+.++++.|++
T Consensus 57 p~e~lv~aa~~~~~diV~lS~~~~----~~~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 57 TPEQVAMAAVQEDVDVIGVSILNG----AHLHLMKRLMAKLRE 95 (161)
T ss_dssp CHHHHHHHHHHTTCSEEEEEESSS----CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCEEEEEeech----hhHHHHHHHHHHHHh
Confidence 468899999999999999998654 345556666777776
No 112
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=22.48 E-value=2.5e+02 Score=21.15 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCC
Q 013207 40 FEEICSIAEQKEVDFVLLGGDLF 62 (447)
Q Consensus 40 feeil~~a~~~~vD~VliaGDLf 62 (447)
.+++++.+.+..+|+|++-=++-
T Consensus 36 ~~~a~~~~~~~~~dlvl~D~~l~ 58 (124)
T 1srr_A 36 GLQALDIVTKERPDLVLLDMKIP 58 (124)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCT
T ss_pred HHHHHHHHhccCCCEEEEecCCC
Confidence 35566666778899999865553
No 113
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=21.69 E-value=2.8e+02 Score=21.29 Aligned_cols=24 Identities=29% Similarity=0.203 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCC
Q 013207 40 FEEICSIAEQKEVDFVLLGGDLFH 63 (447)
Q Consensus 40 feeil~~a~~~~vD~VliaGDLfd 63 (447)
.+++++.+.+..+|+|++-=++-+
T Consensus 36 ~~~a~~~~~~~~~dlvl~D~~l~~ 59 (136)
T 1mvo_A 36 GEEALKKAETEKPDLIVLDVMLPK 59 (136)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCSS
T ss_pred HHHHHHHHhhcCCCEEEEecCCCC
Confidence 355666677788999988655533
No 114
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=21.49 E-value=2.4e+02 Score=27.78 Aligned_cols=47 Identities=21% Similarity=0.235 Sum_probs=30.7
Q ss_pred cHHHHHHHHHH-HHHHcCCCEEEEc-------CCCCCCCCCCHHHHHHHHHHHHH
Q 013207 35 DSFEAFEEICS-IAEQKEVDFVLLG-------GDLFHENKPSRSTLVKAIEILRR 81 (447)
Q Consensus 35 d~~~~feeil~-~a~~~~vD~Vlia-------GDLfd~~~ps~~~l~~~~~~L~~ 81 (447)
+...+|++++. .+.+.+||+||+. ||=.-.-+-+.+...++.+.+++
T Consensus 230 ~y~~~~~~~~~~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~g~~~~~~~~~~ 284 (367)
T 3max_A 230 SYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKT 284 (367)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEECCccCcCCCCCCCeeeCHHHHHHHHHHHHh
Confidence 44568888765 6778999998863 45444444566666666665553
No 115
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=21.23 E-value=1.7e+02 Score=26.95 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=10.6
Q ss_pred CCCcEEEECCCCC
Q 013207 117 VGLPVFSIHGNHD 129 (447)
Q Consensus 117 ~~ipV~~I~GNHD 129 (447)
.++||++++++..
T Consensus 141 ~~~PVlvv~~~~~ 153 (319)
T 3olq_A 141 CPAPVWMVKDKEW 153 (319)
T ss_dssp CSSCEEEEESSCC
T ss_pred CCCCEEEecCccc
Confidence 5799999998764
No 116
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=20.93 E-value=1.8e+02 Score=23.18 Aligned_cols=52 Identities=8% Similarity=-0.016 Sum_probs=31.1
Q ss_pred CCceEEEEEcCCCCCCCC-------CcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 013207 10 ANTVRILVATDCHLGYME-------KDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFH 63 (447)
Q Consensus 10 ~~~mrILh~SD~HLG~~~-------~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd 63 (447)
..++|||++.|-..-... .+. .-......+++++.+.+..+|+||+--++-+
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~ 63 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRLGC--NIITFTSPLDALEALKGTSVQLVISDMRMPE 63 (154)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTTTC--EEEEESCHHHHHHHHTTSCCSEEEEESSCSS
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHhcCCCCEEEEecCCCC
Confidence 356899998887532110 010 0011223467777888889999999766654
No 117
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=20.85 E-value=2.1e+02 Score=26.59 Aligned_cols=66 Identities=15% Similarity=0.068 Sum_probs=42.7
Q ss_pred ceEEEEEcCCCCCCCCC--cccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHhh
Q 013207 12 TVRILVATDCHLGYMEK--DEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHC 83 (447)
Q Consensus 12 ~mrILh~SD~HLG~~~~--~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd~~~ps~~~l~~~~~~L~~l~ 83 (447)
.+++.-+ |.++... ++...+.....+++.++.|.+.++..|++.|. . ...+.....++.+.|++++
T Consensus 89 GL~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~~--~-~~~~~~~~~~~~~~l~~l~ 156 (305)
T 3obe_A 89 GLRISSS---HLTPSLREYTKENMPKFDEFWKKATDIHAELGVSCMVQPSL--P-RIENEDDAKVVSEIFNRAG 156 (305)
T ss_dssp TCEEEEE---BCCCSCCCCCGGGHHHHHHHHHHHHHHHHHHTCSEEEECCC--C-CCSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEe---eccccccccchhhHHHHHHHHHHHHHHHHHcCCCEEEeCCC--C-CCCCHHHHHHHHHHHHHHH
Confidence 4565432 5554322 22233556778999999999999999998763 2 2235556666777777764
No 118
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=20.61 E-value=2.9e+02 Score=21.23 Aligned_cols=23 Identities=17% Similarity=0.004 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCC
Q 013207 40 FEEICSIAEQKEVDFVLLGGDLF 62 (447)
Q Consensus 40 feeil~~a~~~~vD~VliaGDLf 62 (447)
.++.++.+.+..+|+|++-=++-
T Consensus 36 ~~~al~~~~~~~~dlvl~D~~l~ 58 (132)
T 3crn_A 36 AGEGLAKIENEFFNLALFXIKLP 58 (132)
T ss_dssp HHHHHHHHHHSCCSEEEECSBCS
T ss_pred HHHHHHHHhcCCCCEEEEecCCC
Confidence 35666777788999999865553
No 119
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=20.44 E-value=1.9e+02 Score=28.47 Aligned_cols=49 Identities=4% Similarity=0.003 Sum_probs=33.9
Q ss_pred cHHHHHHH-HHHHHHHcCCCEEEE-------cCCCCCCCCCCHHHHHHHHHHHHHhh
Q 013207 35 DSFEAFEE-ICSIAEQKEVDFVLL-------GGDLFHENKPSRSTLVKAIEILRRHC 83 (447)
Q Consensus 35 d~~~~fee-il~~a~~~~vD~Vli-------aGDLfd~~~ps~~~l~~~~~~L~~l~ 83 (447)
+...+|++ ++..+.+.+||+||+ .||=.-.-.-+.+...+..+.+.+++
T Consensus 240 ~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a 296 (369)
T 1zz1_A 240 AYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCA 296 (369)
T ss_dssp HHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHHHHHHHH
Confidence 34568888 677788899999887 35544444556777777777776653
No 120
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=20.28 E-value=2.6e+02 Score=21.17 Aligned_cols=50 Identities=12% Similarity=0.040 Sum_probs=29.7
Q ss_pred ceEEEEEcCCCCCCCC-------CcccccccHHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 013207 12 TVRILVATDCHLGYME-------KDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFH 63 (447)
Q Consensus 12 ~mrILh~SD~HLG~~~-------~~~~r~~d~~~~feeil~~a~~~~vD~VliaGDLfd 63 (447)
++|||++.|-..-... .+. .-......+++++.+.+..+|+|++-=++-+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~ 59 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGF--QADYVMSGTDALHAMSTRGYDAVFIDLNLPD 59 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTE--EEEEESSHHHHHHHHHHSCCSEEEEESBCSS
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCC--CEEEECCHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 5788888876432110 010 0011223567777888899999999766644
Done!