BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013209
(447 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZZ|B Chain B, Structure Of A Cytochrome B5 Core-Swap Mutant
Length = 82
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 6 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF 59
KY T EE++ HN A+ W+ I KVYD+T + +HPGG+ LL AG D T++F
Sbjct: 3 KYYTLEEIQKHNNAKSTWMIIHYKVYDITRFLSEHPGGEEVLLEQAGADATESF 56
>pdb|3LF5|A Chain A, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
pdb|3LF5|B Chain B, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
Length = 88
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 8 ITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYH 63
+T EEL+ HNK +D WI I+G VY+V+ + + HPGG+ L+ AG D T+ F H
Sbjct: 8 VTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVH 63
>pdb|1X3X|A Chain A, Crystal Structure Of Cytochrome B5 From Ascaris Suum
pdb|1X3X|B Chain B, Crystal Structure Of Cytochrome B5 From Ascaris Suum
Length = 82
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 3 AEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAY 62
+KKY T EE+ HN DLWI G+V+D+T + K+HPGG V +LN AGQD T
Sbjct: 2 GDKKY-TKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGGKV-ILNKAGQDATSVLKTL 59
Query: 63 HP 64
P
Sbjct: 60 AP 61
>pdb|1EUE|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1EUE|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 86
Score = 59.3 bits (142), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 7 YITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF--IAYHP 64
Y EE+ N AE+ W+ I G+VYD+T + +HPGG+ LL AG D T++F I + P
Sbjct: 6 YYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEILLEQAGADATESFEDIGHSP 65
Query: 65 GTAWQYLDKLFTGYYVQDFEVSEI 88
++ YY+ D +++
Sbjct: 66 DAR-----EMLKQYYIGDVHPNDL 84
>pdb|1B5M|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 84
Score = 58.9 bits (141), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 7 YITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF--IAYHP 64
Y EE+ N AE+ W+ I G+VYD+T + +HPGG+ LL AG D T++F + + P
Sbjct: 4 YYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSP 63
Query: 65 GTAWQYLDKLFTGYYVQDFEVSEI 88
++ YY+ D +++
Sbjct: 64 DAR-----EMLKQYYIGDVHPNDL 82
>pdb|3MUS|A Chain A, 2a Resolution Structure Of Rat Type B Cytochrome B5
pdb|3MUS|B Chain B, 2a Resolution Structure Of Rat Type B Cytochrome B5
Length = 87
Score = 58.9 bits (141), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 7 YITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF--IAYHP 64
Y EE+ N AE+ W+ I G+VYD+T + +HPGG+ LL AG D T++F + + P
Sbjct: 6 YYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSP 65
Query: 65 GTAWQYLDKLFTGYYVQDFEVSEI 88
++ YY+ D +++
Sbjct: 66 DAR-----EMLKQYYIGDVHPNDL 84
>pdb|3NER|A Chain A, Structure Of Human Type B Cytochrome B5
pdb|3NER|B Chain B, Structure Of Human Type B Cytochrome B5
Length = 92
Score = 58.2 bits (139), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 1 MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFI 60
+E Y EE+ N ++LW+ I G+VYDVT + +HPGG+ LL AG D +++F
Sbjct: 5 VETSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFE 64
Query: 61 AY-HPGTAWQYLDKLFTGYYVQDFEVSEISKD 91
H A + L + YY+ D S++ +
Sbjct: 65 DVGHSSDAREMLKQ----YYIGDIHPSDLKPE 92
>pdb|1AWP|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1AWP|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 92
Score = 58.2 bits (139), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 7 YITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF--IAYHP 64
Y EE+ N AE+ W+ I G+VYD+T + +HPGG+ LL AG D T++F + + P
Sbjct: 11 YYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEELLLEQAGADATESFEDLGHSP 70
Query: 65 GTAWQYLDKLFTGYYVQDFEVSEI 88
++ YY+ D +++
Sbjct: 71 DAR-----EMLKQYYIGDVHPNDL 89
>pdb|1M2M|A Chain A, Crystal Structure Of E44aE48AE56AD60A MUTANT OF
Cytochrome B5
Length = 82
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 6 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPG 65
KY T EE++ HN ++ W+ + KVYD+T++ ++HPGG+ L AG D T F A
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHS 62
Query: 66 TAWQYLDKLF 75
T + L K F
Sbjct: 63 TDARELSKTF 72
>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of
Trypsin-Solubilized Fragment Of Cytochrome B5
Length = 82
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 6 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPG 65
KY T EE++ HN ++ W+ + KVYD+T++ ++HPGG+ L AG D T+ F +
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHGHS 62
Query: 66 TAWQYLDKLF 75
T + L K F
Sbjct: 63 TDARELSKTF 72
>pdb|1F03|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
pdb|1F04|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
Length = 82
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 6 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPG 65
KY T EE++ HN ++ W+ + KVYD+T++ ++HPGG+ L AG D T F A
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHS 62
Query: 66 TAWQYLDKLF 75
T + L K F
Sbjct: 63 TDARELSKTF 72
>pdb|1J0Q|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V61h
Length = 82
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 6 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPG 65
KY T EE++ HN ++ W+ + KVYD+T++ ++HPGG+ L AG D T+ F +
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHGHS 62
Query: 66 TAWQYLDKLF 75
T + L K F
Sbjct: 63 TDARELSKTF 72
>pdb|2M33|A Chain A, Solution Nmr Structure Of Full-length Oxidized
Microsomal Rabbit Cytochrome B5
Length = 104
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 2 EAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIA 61
+ + KY T EE++ HN ++ W+ + KVYD+T++ ++HPGG+ L AG D T+ F
Sbjct: 6 DKDVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFED 65
Query: 62 YHPGTAWQYLDKLFTGYYVQDFEVSEISKDYRRL 95
T + L K F + + S++SK L
Sbjct: 66 VGHSTDARELSKTFIIGELHPDDRSKLSKPMETL 99
>pdb|1DO9|A Chain A, Solution Structure Of Oxidized Microsomal Rabbit
Cytochrome B5. Factors Determining The Heterogeneous
Binding Of The Heme
Length = 94
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 2 EAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIA 61
+ + KY T EE++ HN ++ W+ + KVYD+T++ ++HPGG+ L AG D T+ F
Sbjct: 1 DKDVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFED 60
Query: 62 YHPGTAWQYLDKLFTGYYVQDFEVSEISKDYRRL 95
T + L K F + + S++SK L
Sbjct: 61 VGHSTDARELSKTFIIGELHPDDRSKLSKPMETL 94
>pdb|1LQX|A Chain A, Crystal Structure Of V45e Mutant Of Cytochrome B5
Length = 82
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 6 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPG 65
KY T EE++ HN ++ W+ + KVYD+T++ ++HPGG+ L AG D T+ F
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEELREQAGGDATENFEDVGHS 62
Query: 66 TAWQYLDKLF 75
T + L K F
Sbjct: 63 TDARELSKTF 72
>pdb|1M20|A Chain A, Crystal Structure Of F35y Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 6 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPG 65
KY T EE++ HN ++ W+ + KVYD+T++ ++HPGG+ L AG D T+ F
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKYLEEHPGGEEVLREQAGGDATENFEDVGHS 62
Query: 66 TAWQYLDKLF 75
T + L K F
Sbjct: 63 TDARELSKTF 72
>pdb|1CYO|A Chain A, Bovine Cytochrome B(5)
Length = 93
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 6 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPG 65
KY T EE++ HN ++ W+ + KVYD+T++ ++HPGG+ L AG D T+ F
Sbjct: 5 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 66 TAWQYLDKLFTGYYVQDFEVSEISK 90
T + L K F + + S+I+K
Sbjct: 65 TDARELSKTFIIGELHPDDRSKITK 89
>pdb|1I5U|A Chain A, Solution Structure Of Cytochrome B5 Triple Mutant
(E48aE56AD60A)
Length = 82
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 6 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPG 65
KY T EE++ HN ++ W+ + KVYD+T++ ++HPGG+ L AG D T F A
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLRAQAGGDATANFEAVGHS 62
Query: 66 TAWQYLDKLF 75
T + L K F
Sbjct: 63 TDARELSKTF 72
>pdb|1HKO|A Chain A, Nmr Structure Of Bovine Cytochrome B5
Length = 104
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 6 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPG 65
KY T EE++ HN ++ W+ + KVYD+T++ ++HPGG+ L AG D T+ F
Sbjct: 9 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 68
Query: 66 TAWQYLDKLFTGYYVQDFEVSEISK 90
T + L K F + + S+I+K
Sbjct: 69 TDARELSKTFIIGELHPDDRSKITK 93
>pdb|1EHB|A Chain A, Crystal Structure Of Recombinant Trypsin-Solubilized
Fragment Of Cytochrome B5
pdb|1NX7|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5
Length = 82
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 6 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPG 65
KY T EE++ HN ++ W+ + KVYD+T++ ++HPGG+ L AG D T+ F
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 62
Query: 66 TAWQYLDKLF 75
T + L K F
Sbjct: 63 TDARELSKTF 72
>pdb|1SH4|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V45h
Length = 82
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 6 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPG 65
KY T EE++ HN ++ W+ + KVYD+T++ ++HPGG+ L AG D T+ F
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEHLREQAGGDATENFEDVGHS 62
Query: 66 TAWQYLDKLF 75
T + L K F
Sbjct: 63 TDARELSKTF 72
>pdb|1LR6|A Chain A, Crystal Structure Of V45y Mutant Of Cytochrome B5
Length = 82
Score = 55.8 bits (133), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 6 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPG 65
KY T EE++ HN ++ W+ + KVYD+T++ ++HPGG+ L AG D T+ F
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEYLREQAGGDATENFEDVGHS 62
Query: 66 TAWQYLDKLF 75
T + L K F
Sbjct: 63 TDARELSKTF 72
>pdb|2I96|A Chain A, Solution Structure Of The Oxidized Microsomal Human
Cytochrome B5
Length = 108
Score = 55.8 bits (133), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 6 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF 59
KY T EE++ HN ++ W+ + KVYD+T++ ++HPGG+ L AG D T+ F
Sbjct: 10 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENF 63
>pdb|1M2I|A Chain A, Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME B5
Length = 82
Score = 55.8 bits (133), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 6 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPG 65
KY T EE++ HN ++ W+ + KVYD+T++ ++HPGG+ L AG D T F
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLREQAGGDATANFEDVGHS 62
Query: 66 TAWQYLDKLF 75
T + L K F
Sbjct: 63 TDARELSKTF 72
>pdb|2I89|A Chain A, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|B Chain B, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|C Chain C, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|D Chain D, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
Length = 93
Score = 55.1 bits (131), Expect = 8e-08, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 7 YITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF 59
Y EE+ HN +E W+ + G+VYD+T + +HPGG+ L AG D T++F
Sbjct: 12 YYRLEEVAKHNTSESTWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADATESF 64
>pdb|1U9U|A Chain A, Crystal Structure Of F58y Mutant Of Cytochrome B5
Length = 82
Score = 55.1 bits (131), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 6 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPG 65
KY T EE++ HN ++ W+ + KVYD+T++ ++HPGG+ L AG D T+ +
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENYEDVGHS 62
Query: 66 TAWQYLDKLF 75
T + L K F
Sbjct: 63 TDARELSKTF 72
>pdb|1ICC|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|C Chain C, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|D Chain D, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 87
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 7 YITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF--IAYHP 64
Y EE+ N +E+ W+ I G+VYD+T + +HPGG+ L AG D T++F + + P
Sbjct: 6 YYRLEEVAKRNTSEETWMVIHGRVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSP 65
Query: 65 GTAWQYLDKLFTGYYVQDFEVSEI 88
++ YY+ D +++
Sbjct: 66 DAR-----EMLKQYYIGDVHPNDL 84
>pdb|1IB7|A Chain A, Solution Structure Of F35y Mutant Of Rat Ferro
Cytochrome B5, A Conformation, Ensemble Of 20
Structures
Length = 94
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 2 EAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF 59
+ + KY T EE++ H ++ W+ + KVYD+T++ ++HPGG+ L AG D T+ F
Sbjct: 1 DKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKYLEEHPGGEEVLREQAGGDATENF 58
>pdb|1JEX|A Chain A, Solution Structure Of A67v Mutant Of Rat Ferro
Cytochrome B5
Length = 94
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 2 EAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF 59
+ + KY T EE++ H ++ W+ + KVYD+T++ ++HPGG+ L AG D T+ F
Sbjct: 1 DKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENF 58
>pdb|1BFX|A Chain A, The Solution Nmr Structure Of The B Form Of Oxidized Rat
Microsomal Cytochrome B5, Minimized Average Structure
Length = 99
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 2 EAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF 59
+ + KY T EE++ H ++ W+ + KVYD+T++ ++HPGG+ L AG D T+ F
Sbjct: 6 DKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENF 63
>pdb|1AQA|A Chain A, Solution Structure Of Reduced Microsomal Rat Cytochrome
B5, Nmr, Minimized Average Structure
pdb|1MNY|A Chain A, Dimethyl Propionate Ester Heme-Containing Cytochrome B5
pdb|2AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 21 Structures
Length = 94
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 2 EAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF 59
+ + KY T EE++ H ++ W+ + KVYD+T++ ++HPGG+ L AG D T+ F
Sbjct: 1 DKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENF 58
>pdb|1I87|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1I8C|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1IET|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, Minimized Average
Structure
pdb|1IEU|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, 10 Structures
Length = 98
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 2 EAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF 59
+ + KY T EE++ H ++ W+ + KVYD+T++ ++HPGG+ L AG D T+ F
Sbjct: 5 DKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENF 62
>pdb|1BLV|A Chain A, Solution Structure Of Oxidized Rat Microsomal Cytochrome
B5 In The Presence Of 2 M Guanidinium Chloride:
Monitoring The Early Steps In Protein Unfolding
pdb|1AW3|A Chain A, The Solution Nmr Structure Of Oxidized Rat Microsomal
Cytochrome B5, Minimized Average Structure
pdb|1AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 19 Structures
pdb|1B5A|A Chain A, Rat Ferrocytochrome B5 A Conformation, Nmr, 1 Structure
pdb|1B5B|A Chain A, Rat Ferrocytochrome B5 B Conformation, Nmr, 1 Structure
Length = 94
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 6 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF 59
KY T EE++ H ++ W+ + KVYD+T++ ++HPGG+ L AG D T+ F
Sbjct: 5 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENF 58
>pdb|3KS0|A Chain A, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
pdb|3KS0|B Chain B, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
Length = 95
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 5 KKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGG-DVPLLNLAGQDVTDAFIAYH 63
K+ I+ E+ HNK +D W+ I G VYD+T + HPGG DV N AG+DVT F H
Sbjct: 3 KQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFN-AGKDVTAIFEPLH 61
>pdb|1U9M|A Chain A, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|B Chain B, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|C Chain C, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|D Chain D, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|E Chain E, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|F Chain F, Crystal Structure Of F58w Mutant Of Cytochrome B5
Length = 82
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 6 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPG 65
KY T EE++ HN ++ W+ + KVYD+T++ ++HPGG+ L AG D T+ +
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENWEDVGHS 62
Query: 66 TAWQYLDKLF 75
T + L K F
Sbjct: 63 TDARELSKTF 72
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 1 MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGG-DVPLLNLAGQDVTDAF 59
++ K+ I+ E+ HNK +D W+ I G VYD+T + HPGG DV N AG+DVT F
Sbjct: 4 LDMNKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFN-AGKDVTAIF 62
Query: 60 IAYH-PGTAWQYL 71
H P +Y+
Sbjct: 63 EPLHAPNVIDKYI 75
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 1 MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGG-DVPLLNLAGQDVTDAF 59
++ K+ I+ E+ HNK +D W+ I G VYD+T + HPGG DV N AG+DVT F
Sbjct: 4 LDMNKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFN-AGKDVTAIF 62
Query: 60 IAYH-PGTAWQYL 71
H P +Y+
Sbjct: 63 EPLHAPNVIDKYI 75
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4
Angstroms Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4
Angstroms Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 1 MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGG-DVPLLNLAGQDVTDAF 59
++ K+ I+ E+ HNK +D W+ I G VYD+T + HPGG DV N AG+DVT F
Sbjct: 4 LDMNKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFN-AGKDVTAIF 62
Query: 60 IAYH-PGTAWQYL 71
H P +Y+
Sbjct: 63 EPLHAPNVIDKYI 75
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 1 MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGG-DVPLLNLAGQDVTDAF 59
++ K+ I+ E+ HNK +D W+ I G VYD+T + HPGG DV N AG+DVT F
Sbjct: 4 LDMNKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFN-AGKDVTAIF 62
Query: 60 IAYH-PGTAWQYL 71
H P +Y+
Sbjct: 63 EPLHAPNVIDKYI 75
>pdb|1LJ0|A Chain A, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|B Chain B, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|C Chain C, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|D Chain D, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5
Length = 92
Score = 52.4 bits (124), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 7 YITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF 59
Y EE+ N +E+ W+ + G+VYD+T + +HPGG+ L AG D T++F
Sbjct: 11 YYRLEEVAKRNTSEETWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADATESF 63
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate
Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate
Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 1 MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGG-DVPLLNLAGQDVTDAF 59
++ K+ I+ E+ HNK +D W+ I G VYD+T + HPGG DV N AG+DVT F
Sbjct: 4 LDMNKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFN-AGKDVTAIF 62
Query: 60 IAYH-PGTAWQYL 71
H P +Y+
Sbjct: 63 EPLHAPNVIDKYI 75
>pdb|1M59|A Chain A, Crystal Structure Of P40v Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 52.0 bits (123), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 6 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPG 65
KY T EE++ HN ++ W+ + KVYD+T++ ++H GG+ L AG D T+ F
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHVGGEEVLREQAGGDATENFEDVGHS 62
Query: 66 TAWQYLDKLF 75
T + L K F
Sbjct: 63 TDARELSKTF 72
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 5 KKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGG-DVPLLNLAGQDVTDAFIAYH 63
K+ I+ E+ HNK +D W+ I G VYD+T + HPGG DV N AG+DVT F H
Sbjct: 3 KQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFN-AGKDVTAIFEPLH 61
Query: 64 -PGTAWQYL 71
P +Y+
Sbjct: 62 APNVIDKYI 70
>pdb|2IBJ|A Chain A, Structure Of House Fly Cytochrome B5
Length = 88
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 6 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF 59
KY T E+ +N + W I VYDVT + +HPGG+ L+ AG+D T+ F
Sbjct: 7 KYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHF 60
>pdb|1CXY|A Chain A, Structure And Characterization Of Ectothiorhodospira
Vacuolata Cytochrome B558, A Prokaryotic Homologue Of
Cytochrome B5
Length = 90
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 2 EAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF 59
EA T E++ H+ +D W++I GKVYD+T + HPG +L GQ+ T+A+
Sbjct: 4 EATLPVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAW 61
>pdb|1MJ4|A Chain A, Crystal Structure Analysis Of The Cytochrome B5 Domain
Of Human Sulfite Oxidase
Length = 82
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 9 TAEELRTHNKAED-LWISIQGKVYDVTEWAKQHPGGDVPLLNLAG 52
T EE+ +H E +W+++ +V+DVTE+ HPGG L+ AG
Sbjct: 8 TKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAG 52
>pdb|2KEO|A Chain A, Solution Nmr Structure Of Human Protein Hs00059,
Cytochrome-B5-Like Domain Of The Herc2 E3 Ligase.
Northeast Structural Genomics Consortium (Nesg) Target
Ht98a
Length = 112
Score = 33.5 bits (75), Expect = 0.23, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 12 ELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQD 54
+L HN W I GKVYD+ ++ Q + L AG+D
Sbjct: 30 DLENHNNDGGFWTVIDGKVYDIKDFQTQSLTENSILAQFAGED 72
>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 9 TAEELRTHNKAED-LWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTA 67
T EE+ H E+ +W++ V+DVT++ + HPGG +L LA + F A +
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKIL-LAAGGALEPFWALYAVHG 66
Query: 68 WQYLDKLFTGYYVQDFEVSEISKD 91
++ +L Q ++V E+S D
Sbjct: 67 EPHVLELL-----QQYKVGELSPD 85
>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 9 TAEELRTHNKAED-LWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTA 67
T EE+ H E+ +W++ V+DVT++ + HPGG +L LA + F A +
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKIL-LAAGGALEPFWALYAVHG 66
Query: 68 WQYLDKLFTGYYVQDFEVSEISKD 91
++ +L Q ++V E+S D
Sbjct: 67 EPHVLELL-----QQYKVGELSPD 85
>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr
322 Phe
Length = 466
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 9 TAEELRTHNKAED-LWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTA 67
T EE+ H E+ +W++ V+DVT++ + HPGG +L LA + F A +
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKIL-LAAGGALEPFWALYAVHG 66
Query: 68 WQYLDKLFTGYYVQDFEVSEISKD 91
++ +L Q ++V E+S D
Sbjct: 67 EPHVLELL-----QQYKVGELSPD 85
>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver
pdb|1SOX|B Chain B, Sulfite Oxidase From Chicken Liver
Length = 466
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 9 TAEELRTHNKAED-LWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTA 67
T EE+ H E+ +W++ V+DVT++ + HPGG +L LA + F A +
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKIL-LAAGGALEPFWALYAVHG 66
Query: 68 WQYLDKLFTGYYVQDFEVSEISKD 91
++ +L Q ++V E+S D
Sbjct: 67 EPHVLELL-----QQYKVGELSPD 85
>pdb|3HBG|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant C185s
pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant
Sulfite Oxidase With Bound Substrate, Sulfite, At The
Active Site
Length = 466
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 9 TAEELRTHNKAED-LWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTA 67
T EE+ H E+ +W++ V+DVT++ + HPGG +L LA + F A +
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKIL-LAAGGALEPFWALYAVHG 66
Query: 68 WQYLDKLFTGYYVQDFEVSEISKD 91
++ +L Q ++V E+S D
Sbjct: 67 EPHVLELL-----QQYKVGELSPD 85
>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant Cys 185 Ala
Length = 466
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 9 TAEELRTHNKAED-LWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTA 67
T EE+ H E+ +W++ V+DVT++ + HPGG +L LA + F A +
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKIL-LAAGGALEPFWALYAVHG 66
Query: 68 WQYLDKLFTGYYVQDFEVSEISKD 91
++ +L Q ++V E+S D
Sbjct: 67 EPHVLELL-----QQYKVGELSPD 85
>pdb|1J03|A Chain A, Solution Structure Of A Putative Steroid-Binding Protein
From Arabidopsis
Length = 102
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
Query: 9 TAEELRTHNKAED---LWISIQGKVYDVTEWAKQH-PGGDVPLLNLAGQDVTDAF 59
TAE+L +N ++ ++++I+G+V+DVT + GGD + AG+D + A
Sbjct: 6 TAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSM--FAGKDASRAL 58
>pdb|1T0G|A Chain A, Hypothetical Protein At2g24940.1 From Arabidopsis
Thaliana Has A Cytochrome B5 Like Fold
Length = 109
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
Query: 9 TAEELRTHNKAED---LWISIQGKVYDVTEWAKQH-PGGDVPLLNLAGQDVTDAF 59
TAE+L +N ++ ++++I+G+V+DVT + GGD + AG+D + A
Sbjct: 13 TAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSM--FAGKDASRAL 65
>pdb|2IDB|A Chain A, Crystal Structure Of 3-Octaprenyl-4-Hydroxybenzoate
Decarboxylase (Ubid) From Escherichia Coli, Northeast
Structural Genomics Target Er459.
pdb|2IDB|B Chain B, Crystal Structure Of 3-Octaprenyl-4-Hydroxybenzoate
Decarboxylase (Ubid) From Escherichia Coli, Northeast
Structural Genomics Target Er459.
pdb|2IDB|C Chain C, Crystal Structure Of 3-Octaprenyl-4-Hydroxybenzoate
Decarboxylase (Ubid) From Escherichia Coli, Northeast
Structural Genomics Target Er459
Length = 505
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 25/63 (39%)
Query: 2 EAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIA 61
E + I ++L NK W+S +G D EW HPG P+ G D A
Sbjct: 172 ERQNLGIYRQQLIGKNKLIXRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGA 231
Query: 62 YHP 64
P
Sbjct: 232 VTP 234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,604,244
Number of Sequences: 62578
Number of extensions: 620675
Number of successful extensions: 1686
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1632
Number of HSP's gapped (non-prelim): 56
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)