Query 013209
Match_columns 447
No_of_seqs 257 out of 2307
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 01:31:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03199 delta6-acyl-lipid des 100.0 6.7E-84 1.4E-88 655.3 35.5 419 3-427 21-474 (485)
2 PLN03198 delta6-acyl-lipid des 100.0 1.5E-82 3.2E-87 645.3 35.5 411 4-430 102-521 (526)
3 KOG4232 Delta 6-fatty acid des 100.0 2.7E-71 5.9E-76 525.3 24.7 401 4-427 6-423 (430)
4 cd03506 Delta6-FADS-like The D 100.0 4.9E-43 1.1E-47 319.6 15.0 201 141-402 2-204 (204)
5 PLN02598 omega-6 fatty acid de 100.0 4.8E-37 1E-41 303.7 20.3 308 91-424 79-391 (421)
6 PLN02498 omega-3 fatty acid de 100.0 1.3E-35 2.7E-40 291.0 19.6 314 91-424 103-429 (450)
7 COG3239 DesA Fatty acid desatu 100.0 4.1E-35 8.9E-40 285.7 22.8 298 92-420 18-318 (343)
8 PLN02505 omega-6 fatty acid de 100.0 2.3E-34 5E-39 281.1 21.6 313 91-424 32-366 (381)
9 cd03507 Delta12-FADS-like The 100.0 7.6E-34 1.7E-38 261.3 16.9 214 114-386 8-222 (222)
10 PF00487 FA_desaturase: Fatty 100.0 2.3E-34 4.9E-39 271.3 13.3 250 136-407 3-256 (257)
11 cd03511 Rhizopine-oxygenase-li 100.0 1.4E-33 3E-38 270.8 18.1 264 97-400 4-276 (285)
12 PLN02579 sphingolipid delta-4 100.0 1E-31 2.3E-36 257.5 23.0 273 90-417 21-303 (323)
13 cd03508 Delta4-sphingolipid-FA 100.0 2.4E-32 5.2E-37 259.0 17.4 261 103-417 10-275 (289)
14 cd03514 CrtR_beta-carotene-hyd 100.0 1.9E-32 4E-37 249.2 14.1 187 134-402 19-207 (207)
15 cd03509 DesA_FADS-like Fatty a 100.0 1.1E-30 2.4E-35 248.3 20.1 244 139-417 27-277 (288)
16 cd03510 Rhizobitoxine-FADS-lik 100.0 1.5E-30 3.3E-35 230.1 10.1 160 129-392 11-174 (175)
17 cd03513 CrtW_beta-carotene-ket 100.0 4.7E-28 1E-32 220.9 18.7 185 143-389 36-224 (225)
18 KOG2987 Fatty acid desaturase 99.9 5.1E-27 1.1E-31 207.4 14.8 257 103-415 35-299 (324)
19 KOG0537 Cytochrome b5 [Energy 99.9 1.8E-24 4E-29 177.4 4.5 81 4-85 3-84 (124)
20 cd03512 Alkane-hydroxylase Alk 99.8 5.8E-19 1.3E-23 170.2 18.5 214 133-391 66-285 (314)
21 PF00173 Cyt-b5: Cytochrome b5 99.8 1.4E-20 3E-25 143.6 3.1 74 7-81 1-76 (76)
22 KOG0536 Flavohemoprotein b5+b5 99.8 4.6E-20 1E-24 147.3 4.3 77 5-82 67-144 (145)
23 cd01060 Membrane-FADS-like The 99.7 2.9E-18 6.2E-23 143.4 5.9 59 152-211 14-72 (122)
24 COG5274 CYB5 Cytochrome b invo 99.6 2.5E-16 5.5E-21 132.8 6.0 79 3-82 47-126 (164)
25 PLN02252 nitrate reductase [NA 99.6 1.2E-16 2.6E-21 172.6 5.1 80 4-84 516-595 (888)
26 KOG4576 Sulfite oxidase, heme- 99.4 6.3E-13 1.4E-17 106.4 4.5 82 3-86 77-162 (167)
27 COG1398 OLE1 Fatty-acid desatu 98.7 9.1E-08 2E-12 87.3 11.1 50 158-209 67-117 (289)
28 PLN02220 delta-9 acyl-lipid de 98.7 9.4E-07 2E-11 84.1 16.3 54 158-213 77-131 (299)
29 KOG1600 Fatty acid desaturase 98.7 3.7E-07 7.9E-12 85.3 12.9 57 158-216 88-145 (321)
30 COG4892 Predicted heme/steroid 98.6 7.9E-08 1.7E-12 68.1 5.5 75 5-82 1-77 (81)
31 cd03505 Delta9-FADS-like The D 98.1 4E-05 8.8E-10 67.4 11.2 50 160-211 27-76 (178)
32 KOG1110 Putative steroid membr 97.7 5.8E-05 1.3E-09 64.9 4.9 55 4-60 54-112 (183)
33 KOG1108 Predicted heme/steroid 96.5 0.0022 4.8E-08 57.1 3.5 53 6-61 60-117 (281)
34 PF14901 Jiv90: Cleavage induc 84.9 0.5 1.1E-05 36.6 1.4 16 23-38 58-73 (94)
35 cd03512 Alkane-hydroxylase Alk 73.0 57 0.0012 31.7 11.8 13 193-205 264-276 (314)
36 cd03509 DesA_FADS-like Fatty a 62.9 62 0.0013 31.0 9.6 61 136-206 180-243 (288)
37 PF13829 DUF4191: Domain of un 53.3 57 0.0012 29.9 7.1 19 133-151 49-67 (224)
38 KOG0720 Molecular chaperone (D 49.5 7.1 0.00015 39.2 0.8 16 22-37 379-394 (490)
39 PF00487 FA_desaturase: Fatty 41.7 42 0.00091 30.5 4.7 14 192-205 218-231 (257)
40 PLN02601 beta-carotene hydroxy 41.7 69 0.0015 30.1 5.7 60 102-165 175-236 (303)
41 COG3239 DesA Fatty acid desatu 40.0 63 0.0014 31.9 5.7 15 192-206 268-282 (343)
42 cd03513 CrtW_beta-carotene-ket 36.4 26 0.00056 32.3 2.3 19 370-390 87-105 (225)
43 PF10520 Kua-UEV1_localn: Kua- 35.5 89 0.0019 27.6 5.3 39 156-203 100-138 (178)
44 cd03511 Rhizopine-oxygenase-li 34.9 1.8E+02 0.004 27.5 8.0 14 193-206 246-259 (285)
45 COG1398 OLE1 Fatty-acid desatu 34.8 54 0.0012 30.9 4.0 15 192-206 236-250 (289)
46 PLN02434 fatty acid hydroxylas 31.6 1.9E+02 0.004 26.9 7.0 11 194-204 122-132 (237)
47 PLN02505 omega-6 fatty acid de 30.3 1.3E+02 0.0029 30.1 6.3 32 147-178 263-294 (381)
48 PLN02598 omega-6 fatty acid de 28.8 2.5E+02 0.0053 28.6 7.9 54 153-206 294-352 (421)
49 PLN02220 delta-9 acyl-lipid de 27.0 3.2E+02 0.007 26.4 8.1 41 156-206 215-257 (299)
50 PF06738 DUF1212: Protein of u 26.7 3E+02 0.0065 24.2 7.5 33 117-151 107-139 (193)
51 smart00099 btg1 tob/btg1 famil 25.7 49 0.0011 26.6 1.9 42 364-406 33-83 (108)
52 PRK06549 acetyl-CoA carboxylas 25.4 44 0.00096 27.9 1.6 13 22-34 5-17 (130)
53 PF06127 DUF962: Protein of un 24.4 3.4E+02 0.0074 21.1 7.9 40 137-176 44-83 (95)
54 PF08207 EFP_N: Elongation fac 22.7 57 0.0012 22.9 1.6 26 21-46 8-33 (58)
55 PLN03198 delta6-acyl-lipid des 22.7 3.3E+02 0.0072 28.6 7.8 14 193-206 461-474 (526)
56 KOG0081 GTPase Rab27, small G 22.0 61 0.0013 28.0 1.8 22 387-408 140-162 (219)
57 PF11698 V-ATPase_H_C: V-ATPas 21.6 5.1 0.00011 32.8 -4.5 26 30-55 65-90 (119)
58 PLN02579 sphingolipid delta-4 21.6 2E+02 0.0044 28.1 5.6 14 193-206 259-272 (323)
59 PF12105 SpoU_methylas_C: SpoU 21.6 42 0.00092 23.6 0.7 19 389-407 27-45 (57)
60 TIGR02269 Myxococcus xanthus p 20.9 66 0.0014 28.4 1.9 27 373-408 125-151 (211)
61 PHA01623 hypothetical protein 20.2 1.6E+02 0.0034 20.5 3.3 30 387-417 22-51 (56)
62 PF12683 DUF3798: Protein of u 20.0 86 0.0019 29.6 2.5 51 375-425 136-200 (275)
No 1
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=100.00 E-value=6.7e-84 Score=655.35 Aligned_cols=419 Identities=26% Similarity=0.498 Sum_probs=352.9
Q ss_pred ccCCCCCHHHHhcccCCCCeEEEEcCEEEEcccccccccccccceecccCCChhHHHHhcCchhHHHhhhhccCCccccC
Q 013209 3 AEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYYVQD 82 (447)
Q Consensus 3 ~~~~~~~~~e~~~h~~~~~~~v~i~g~vyd~t~~~~~hpgg~~~i~~~~g~D~t~~f~~~H~~~~~~~l~~~~vg~~~~~ 82 (447)
++.+.+|++||++|+++++|||+|+|+|||||+|. +||||+ .|..++|+|+|++|+++|+..++++|++|+|| ++++
T Consensus 21 ~~~~~~s~~ev~~h~~~~~~wi~i~g~vYDvt~f~-~HPGG~-~i~~~aG~DaT~~F~~~H~~~~~~~l~~~~iG-~l~~ 97 (485)
T PLN03199 21 EKPQKISWQEVKKHASPDDAWIIHQNKVYDVSNWH-DHPGGA-VIFTHAGDDMTDIFAAFHAPGSQALMKKFYIG-DLIP 97 (485)
T ss_pred ccCCccCHHHHHhhCCCCCeEEEECCEEEcCCCcC-cCCCch-HHHhhCCCChhHHHHHhcCHHHHHHHHhcccc-cccc
Confidence 45688999999999999999999999999999997 899998 78899999999999999999999999999999 8865
Q ss_pred cc-------chhhhhhhHHHHHHHHHcccCCCCchhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHh
Q 013209 83 FE-------VSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAY 155 (447)
Q Consensus 83 ~~-------~~~~s~~y~~lr~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llg~~~~~~~~ 155 (447)
++ .++++++|++|+++++++|+|++++..+..+++.+++++++++++.+...++|+.+++++++|++++++++
T Consensus 98 ~~~~~~~~~~~~~~~~y~~L~~~v~~~g~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aillg~~~~~~g~ 177 (485)
T PLN03199 98 ESTEHKDPQQIAFEKGYRDLRAKLIMMGMFKSNKMFYAYKCLFNMAIWAAACALVFYSDRFAMHIASALLLGLFFQQCGW 177 (485)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 33 23457899999999999999999999988888888888888877666566778889999999999999999
Q ss_pred hhcccCccccccChhHHHHHHHHHhhhcCCcchhhhccccccccccccCC-------CCCCCCCCCcchheehhhhcccc
Q 013209 156 VGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSL-------DYDPDLQHIPVFAVSTRLFNSIT 228 (447)
Q Consensus 156 l~Hd~~H~~~~~~~~~N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn~~-------~~DpD~~~~p~~~~~~~~~~~~~ 228 (447)
++||++|+++++++++|+++|.++++++.|.|..||+.+||.||++||.. ++|||++..|++++++.+...+.
T Consensus 178 l~HDa~H~~~~~~~~~N~~~g~~~g~l~~G~S~~wW~~~Hn~HH~~tN~~~~~~~~~~~DPDI~~~p~l~~~~~~~~~~~ 257 (485)
T PLN03199 178 LAHDFLHHQVFKKRKHGDLGGIFWGDLMQGFSMQWWKNKHNGHHAVPNLHCSSADAQDGDPDIDTMPLLAWSLKQAQSFR 257 (485)
T ss_pred HHHhhhhhhhhCCchHHHHHHHHHHHhccCCChHHHHHHHhhhhcCcCcCccccCCCCCCCCCCCCceeeecHHHhhhHh
Confidence 99999999999999999999988888878999999999999999999974 68999998899999877553322
Q ss_pred chhcccccCcchhHhHHhhhchhhHHHHhhhhhHHHHHHHHHHHHhc-------------CCCCchHHHHHHHHHHHHHH
Q 013209 229 SVFYGRKLDFDPVARFLVSYQHWTFYPVMCVARVNLYLQTLLLLFSK-------------RKVPDRALNIMGTLVFWTWF 295 (447)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 295 (447)
+.... ...+...+++.++||++++|++.+.+++|+.+++...+.. +....+..|++..++++++.
T Consensus 258 ~~~~~--~~~~~~~~~~~~~Qh~~~~p~l~l~~l~w~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 335 (485)
T PLN03199 258 EINAD--GKDSGFVKFAIKFQAFFYFPILLLARISWLNESFKCAFGLGAASENAALELEAKGLQYPLLEKAGILLHYAWM 335 (485)
T ss_pred hhhhh--ccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 22111 2234556788999999999998888999988887655521 00012235666777777766
Q ss_pred HHHhhcC--CchhHHHHHHHHHHHHhh-hhhhhhccCCCcccccCCCCCCCcHHHHHHhcccCCCC-----Cchhhhhhc
Q 013209 296 PLLVSYL--PNWPERVMFVMASFTVTA-IQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIAC-----SSWMDWFHG 367 (447)
Q Consensus 296 ~~l~~~~--~~~~~~~~~~l~~~~~~~-~l~~~~~~~H~~~~~~~~~~~~~~~~~~q~~~s~~~~~-----~~~~~~l~~ 367 (447)
..+...+ .++...+.+++++.+++| +++++|.++|..++..+. +...+|.+.|+.||+|+++ +.|++||+|
T Consensus 336 ~~lp~~~~~~~~~~~l~~~~~~~~~~g~~l~~~f~l~H~~~~~~~~-~~~~d~~~~Qv~TT~n~~~~~~~~s~~~~wf~G 414 (485)
T PLN03199 336 FTLSSGFGRFSFAYSAFYFFTATASCGFFLAIVFGLGHNGMATYDA-DARPDFWKLQVTTTRNIIGGHGFPQAFVDWFCG 414 (485)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhhHheEEEecCCccccccCC-CCCccHHHHHHHhccCccCCCCCcchHHHHHhc
Confidence 5554323 223455667778888888 599999999999887533 3456899999999999986 679999999
Q ss_pred ccCcccccccCCCCCccchhhhhHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHHhh
Q 013209 368 GLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLRGAALQA 427 (447)
Q Consensus 368 glnyHieHHlfP~vP~~~L~~~~~~v~~~~~~~g~~Y~~~~~~~~~~~~~~~l~~~~~~~ 427 (447)
||||||||||||+||++|||+++|+||++|+|+|+||++.+|++++++++++|+++|++.
T Consensus 415 GLN~QIEHHLFP~mp~~~y~~i~piVk~~C~k~glpY~~~~~~~a~~~~~~~L~~vg~~~ 474 (485)
T PLN03199 415 GLQYQVDHHLFPMLPRHNIAKCHALVESFCKEWGVKYHEADLVDGTMEVLHHLGKVADDF 474 (485)
T ss_pred cchhhhhhhcCCCCchhhHHhhhHHHHHHHHHhCCCccccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999763
No 2
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=100.00 E-value=1.5e-82 Score=645.27 Aligned_cols=411 Identities=30% Similarity=0.544 Sum_probs=346.9
Q ss_pred cCCCCCHHHHhcccCCCCeEEEEcCEEEEcccccccccccccceecccCCChhHHHHhcCchhHHHhhhhccCCccccCc
Q 013209 4 EKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYYVQDF 83 (447)
Q Consensus 4 ~~~~~~~~e~~~h~~~~~~~v~i~g~vyd~t~~~~~hpgg~~~i~~~~g~D~t~~f~~~H~~~~~~~l~~~~vg~~~~~~ 83 (447)
..+.+|++|+++|++.+||||+|+|+|||+|+|+++||||+ .|..++|+|+|++|+++|+..+.++|++|+|| ++++.
T Consensus 102 ~~~~~t~~ev~~H~~~~d~Wivi~gkVYDvT~fl~~HPGG~-~i~~~aG~DaT~~F~~~H~~~~~~~l~~~~IG-~l~~~ 179 (526)
T PLN03198 102 KSKSHLLSEVAAHNKPNDCWIVIKNKVYDVSDFAAEHPGGS-VISTYFGRDGTDAFSSFHAASTWKILQDFYIG-DVDNV 179 (526)
T ss_pred ccCcCCHHHHHhhCCCCCeEEEECCEEEecHHHHHhCCCch-HHHHhcCCcHhHHHHHhcCHHHHHHHhhCcce-ecCCc
Confidence 34699999999999999999999999999999999999998 78999999999999999999999999999999 88764
Q ss_pred c-chhhhhhhHHHHHHHHHcccCCCCchhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhcccCc
Q 013209 84 E-VSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGH 162 (447)
Q Consensus 84 ~-~~~~s~~y~~lr~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llg~~~~~~~~l~Hd~~H 162 (447)
+ .++.+++|++|+++++++|+|++++.++...++.+++++++++++.+...++|..+++++++|++++|+++++|||+|
T Consensus 180 ~~~~~~~~dy~~Lr~~~~~~G~fk~~~~~y~~~l~~~i~l~a~~~~~~~~~~~~~~~ll~a~llgl~~~q~g~l~HD~~H 259 (526)
T PLN03198 180 EPTPELLKDFRDLRALFLREQLFKSSKLYYVFKLLTNIAIFAASIAIICCSKSISAVLASACMMALCFQQCGWLSHDFLH 259 (526)
T ss_pred cccchhhhhHHHHHHHHHhccccccCcceeHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4 355788999999999999999999998888888888888887766655555666788899999999999999999999
Q ss_pred cccccChhHHHHHHHHHhhhcCCcchhhhccccccccccccCCC-----CCCCCCCCcchheehhhhccccchhcccccC
Q 013209 163 YQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLD-----YDPDLQHIPVFAVSTRLFNSITSVFYGRKLD 237 (447)
Q Consensus 163 ~~~~~~~~~N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn~~~-----~DpD~~~~p~~~~~~~~~~~~~~~~~~~~~~ 237 (447)
+++++++++|+++|.++++++.|.|+.||+.+||.||++||..+ +|||+.+.|+++++++..+...+.
T Consensus 260 ~s~~~~~~~n~~~g~~~~~~~~G~s~~~W~~~Hn~HH~~tN~~~~~~~~~DpDI~~~pl~~~~~~~~~~~~~~------- 332 (526)
T PLN03198 260 NQVFETRWLNEVVGYLIGNAVLGFSTGWWKEKHNLHHAAPNECDQLYQPIDEDIDTLPLIAWSKDILATVENK------- 332 (526)
T ss_pred ccccCCcHHHHHHHHHHHHhhcCCCHHHHHHHHHHhccCCCCCCccCCCCCCCcCccceeEechhhhhcchhh-------
Confidence 99999999999999987887789999999999999999999997 799999999998887654321111
Q ss_pred cchhHhHHhhhchhhHHHHhhhhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHH-hhcCCchhHHHHHHHHH
Q 013209 238 FDPVARFLVSYQHWTFYPVMCVARVNLYLQTLLLLFSKR-KVPDRALNIMGTLVFWTWFPLL-VSYLPNWPERVMFVMAS 315 (447)
Q Consensus 238 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~l~~ 315 (447)
. ...+.++||+++++++.+.++.+.+.++.....++ ....+..++...++++++...+ +..++.|..++.+ ++.
T Consensus 333 --~-~~~~~~yQh~~f~~ll~l~~~~~~~~s~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~l~~~~~~~~l~~~-~l~ 408 (526)
T PLN03198 333 --T-FLRILQYQHLFFMALLFFARGSWLFWSWRYTSTAKLAPADRLLEKGTILFHYFWFIGTACYLLPGWKPLVWM-AVT 408 (526)
T ss_pred --h-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHH
Confidence 1 12445699999999888888888887766544322 1224456666666666655433 2335656554444 445
Q ss_pred HHHhh-hhhhhhccCCCcccccCCCCCCCcHHHHHHhcccCCCCCchhhhhhcccCcccccccCCCCCccchhhhhHHHH
Q 013209 316 FTVTA-IQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVR 394 (447)
Q Consensus 316 ~~~~~-~l~~~~~~~H~~~~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~l~~glnyHieHHlfP~vP~~~L~~~~~~v~ 394 (447)
.++++ +++++|+++|..+++.. .+.||+..|+.+|+|+.+++|++||+||||||+||||||+||++|||+++|+|+
T Consensus 409 ~~~~g~~l~~vF~lnH~~~~v~~---~~~dw~~~Qv~tT~n~~~~~~~~wf~GGLN~QiEHHLFP~iP~~~l~~i~piVk 485 (526)
T PLN03198 409 ELMCGMLLGFVFVLSHNGMEVYN---KSKEFVNAQIVSTRDIKANIFNDWFTGGLNRQIEHHLFPTMPRHNLNKIAPQVE 485 (526)
T ss_pred HHHHHHHHHhhhhccccCCCCCC---CCcCHHHHHHhcCcCcCCchHHHHhhcCCcccchhhcCCCCchhhHHHHhHHHH
Confidence 55555 68999999999999852 234899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcccccHHHHHHHHHHHHHHHHHhhhhc
Q 013209 395 DLCKKHNMPYRSLSFFEANVWTIRTLRGAALQARDL 430 (447)
Q Consensus 395 ~~~~~~g~~Y~~~~~~~~~~~~~~~l~~~~~~~~~~ 430 (447)
++|+|+|+||++.+|++++++++++|+++|++++..
T Consensus 486 ~~C~k~GlpY~~~~~~~a~~~~l~~L~~vg~~~~~~ 521 (526)
T PLN03198 486 AFCIKHGLVYEDVSIAAGTCKVLKALKEVAEAAAEQ 521 (526)
T ss_pred HHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcc
Confidence 999999999999999999999999999999977654
No 3
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=100.00 E-value=2.7e-71 Score=525.26 Aligned_cols=401 Identities=39% Similarity=0.661 Sum_probs=323.8
Q ss_pred cCCCCCHHHHhcccCCCCeEEEEcCEEEEcccccccccccccceecccCCChhHHHHhcCchh--HHHhhhhccCCcccc
Q 013209 4 EKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGT--AWQYLDKLFTGYYVQ 81 (447)
Q Consensus 4 ~~~~~~~~e~~~h~~~~~~~v~i~g~vyd~t~~~~~hpgg~~~i~~~~g~D~t~~f~~~H~~~--~~~~l~~~~vg~~~~ 81 (447)
..+++|+++..+|++.++.|++||| |||+|+|+++||||+..|..++|+|+|++|+++|... +++.|+...+| +..
T Consensus 6 ~~~~~~we~~~~~~~~~~~W~~id~-vYd~s~~~~~HPGG~~~I~~~~g~DaTdaF~AfH~~~~~~~~~l~~l~~~-~~~ 83 (430)
T KOG4232|consen 6 LPTTFSWEGKRKHDKAEGLWLVIDG-VYDISDWIKRHPGGSRVIEHYAGQDATDAFEAFHPGTAFAYKHLKPLLIG-ELS 83 (430)
T ss_pred CceeeeccchhhccCCCceEEEeec-cccHHHHHHhCCCchhHHHHhcCCccchHHHHhCCChHHHHHHHHHHHcC-CcC
Confidence 3468999999999999999999999 9999999999999999999999999999999999997 77899999999 665
Q ss_pred Cccc-------hhhhhhhHHHHHHHHHcccCCCCchhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Q 013209 82 DFEV-------SEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSA 154 (447)
Q Consensus 82 ~~~~-------~~~s~~y~~lr~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llg~~~~~~~ 154 (447)
++.. ....+.++++|+++++.|+++.++.+++...+.+++..++++++.+.. .+++++++|+.++|.+
T Consensus 84 pe~~~~~~~~d~~~~~~f~klr~~~~~~gl~~~~~~ffl~~~l~~i~~~~~a~~~i~~~-----~l~~a~Ll~~a~~Qs~ 158 (430)
T KOG4232|consen 84 PEIPSLDLEKDGFRNESFRKLREKLEDMGLMDLNKTFFLHLLLLIILYLVLAWLLIYLL-----SLISAVLLGLAWAQSG 158 (430)
T ss_pred ccccccccccchhhhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 4332 224457889999999999999999888777766666555554433221 5789999999999999
Q ss_pred hhhcccCccccccChhHHHHHHHHHhhhcCCcchhhhccccccccccccCCCCCCCCCCCcchh-eehhhhccccchhcc
Q 013209 155 YVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFA-VSTRLFNSITSVFYG 233 (447)
Q Consensus 155 ~l~Hd~~H~~~~~~~~~N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn~~~~DpD~~~~p~~~-~~~~~~~~~~~~~~~ 233 (447)
+++||++|.+++|++++|+++..++++.+.|+|..||+..|++||++||..++|||++..|.+. ..+.. .+++
T Consensus 159 ~l~Hd~gH~~i~~~~~wN~~~~~fv~n~L~G~sa~WW~~~H~~HHa~pN~~~~DpDi~~~P~fl~g~~~~------~~~~ 232 (430)
T KOG4232|consen 159 WLQHDYGHLSIFKNSKWNHLAQKFVGNHLKGFSAAWWKSHHNQHHAAPNSLDKDPDIDFEPAFLLGDPNS------HEYG 232 (430)
T ss_pred HHhcccccccccccccHHHHHHHHHhhhcccccHHHHHHHHhhhhccCccCCCCccccccchhhhCCCch------hhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999432 22221 1122
Q ss_pred cccCcchhHhHHhhhchhhHH----HH---hhhhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhhcCCchh
Q 013209 234 RKLDFDPVARFLVSYQHWTFY----PV---MCVARVNLYLQTLLLLFSKRKVPDRALNIMGTLVFWTWFPLLVSYLPNWP 306 (447)
Q Consensus 234 ~~~~~~~~~~~~~~~q~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 306 (447)
+..+ .-.....||.|++ +. +.+...............+..+..+..+.+....++.+.+.++++++.|.
T Consensus 233 k~kr----k~~~~~~qh~yf~~~~~p~l~~~~~~~~~~~~~~~~~~w~Dl~~~~~~~~~~~i~~~~~~~~~~~~~L~~w~ 308 (430)
T KOG4232|consen 233 KKKR----KYTPYPEQHLYFFLIGPPFLRLMWFQQSIIFVQTNLLLWYDLYWPDRFYLRAFIYLHWGWGLLLLSCLPNWP 308 (430)
T ss_pred ccce----eEeecccceEEEEeccchHHHHHHHHHHHHHHHhHHHHHHHhhhhhhHHHhhHHHhcchhhhHHHHhccCch
Confidence 2110 1134457777776 22 33333333333333333444555666666666667777777777788888
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCCCcccccCCCCCCCcHHHHHHhcccCCCCCchhhhhhcccCcccccccCCCCCccch
Q 013209 307 ERVMFVMASFTVTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQL 386 (447)
Q Consensus 307 ~~~~~~l~~~~~~~~l~~~~~~~H~~~~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~l~~glnyHieHHlfP~vP~~~L 386 (447)
..+.++..++.+. ++++|+..+++.+.+...||+..|+.+|+|+.++.+++||+||+|||+||||||++|++||
T Consensus 309 ~r~~~~~~s~~v~------l~~nH~~~~i~~~~~i~~dw~~~Q~~tT~n~~~~~f~dwl~ghln~qieHHLFPtmpr~nL 382 (430)
T KOG4232|consen 309 IRFLFSSWSFWVT------LTMNHIDPEIYHEGDIRRDWFSLQLATTINVGPSKFSDWLSGHLNFQIEHHLFPTMPRHNL 382 (430)
T ss_pred HHHHHHHHHHHHH------HhhhccchhhccCCcchhhHHHHHHhhccccCchhHHHHHHhhhhhhHHhhcCCCCCccch
Confidence 7777766655544 5779999998755445689999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHHhh
Q 013209 387 RKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLRGAALQA 427 (447)
Q Consensus 387 ~~~~~~v~~~~~~~g~~Y~~~~~~~~~~~~~~~l~~~~~~~ 427 (447)
+++.|.|+++|+|+|++|++.+++++++...+.+|+++.+.
T Consensus 383 ~~v~P~Vke~c~k~~l~y~~~~~~~~~~~~~~~lr~~~n~~ 423 (430)
T KOG4232|consen 383 NKVAPLVKELCKKHGLPYREKPHFEALGDIIQQLRNSANPV 423 (430)
T ss_pred HHHHHHHHHHHHHcCCccccchHHHHHHHHHHHhhhccchh
Confidence 99999999999999999999999999999999998887753
No 4
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=100.00 E-value=4.9e-43 Score=319.64 Aligned_cols=201 Identities=41% Similarity=0.772 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHHHhhhcccCccccccChhHHHHHHHHHhhhcCCcchhhhccccccccccccCCCCCCCCCCCcchhee
Q 013209 141 GSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAVS 220 (447)
Q Consensus 141 l~~~llg~~~~~~~~l~Hd~~H~~~~~~~~~N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn~~~~DpD~~~~p~~~~~ 220 (447)
++++++|+++.++++++|||+|+++++++++|+++|.+.+. +.|.|+.+||..|+.||++||+.++|||+...|.+...
T Consensus 2 ~~ai~~g~~~~~~~~~~Hd~~H~~~~~~~~~n~~~g~~~~~-~~g~s~~~w~~~H~~HH~~tn~~~~Dpd~~~~~~~~~~ 80 (204)
T cd03506 2 LLAILLGLFWAQGGFLAHDAGHGQVFKNRWLNKLLGLTVGN-LLGASAGWWKNKHNVHHAYTNILGHDPDIDTLPLLARS 80 (204)
T ss_pred HHHHHHHHHHHHHHHHHHhccCccccCCchHHHHHHHHHHh-ccCCCHHHHHHHHhhhcCcCCCCCCCCCCCcCceEEec
Confidence 56788899999888999999999999999999999997765 66999999999999999999999999999876554333
Q ss_pred hhhhccccchhcccccCcchhHhHHhhhchhhHHHHhhhhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhh
Q 013209 221 TRLFNSITSVFYGRKLDFDPVARFLVSYQHWTFYPVMCVARVNLYLQTLLLLFSKRKVPDRALNIMGTLVFWTWFPLLVS 300 (447)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 300 (447)
+... ..+...++..++|++++++++.+.
T Consensus 81 ~~~~------------~~~~~~~~~~~~q~~~~~~~~~~~---------------------------------------- 108 (204)
T cd03506 81 EPAF------------GKDQKKRFLHRYQHFYFFPLLALL---------------------------------------- 108 (204)
T ss_pred cccc------------ccchHHHHHHHHHHHHHHHHHHHH----------------------------------------
Confidence 2211 012223556667766655443221
Q ss_pred cCCchhHHHHHHHHHHHHhh-hhhhhhccCCCcccccCC-CCCCCcHHHHHHhcccCCCCCchhhhhhcccCcccccccC
Q 013209 301 YLPNWPERVMFVMASFTVTA-IQHIQFCLNHFAANVYLG-PPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLF 378 (447)
Q Consensus 301 ~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~H~~~~~~~~-~~~~~~~~~~q~~~s~~~~~~~~~~~l~~glnyHieHHlf 378 (447)
+..++++.++++ ++.++++++|..+++... ++.+.||++.|+.+|+|+.++++++|++||+|||+|||||
T Consensus 109 --------~~~~~~~~~~~~~~l~~~~~~~H~~~~~~~~~~~~~~~w~~~q~~tt~~~~~~~~~~~l~ggln~qieHHLf 180 (204)
T cd03506 109 --------LLAFLVVQLAGGLWLAVVFQLNHFGMPVEDPPGESKNDWLERQVLTTRNITGSPFLDWLHGGLNYQIEHHLF 180 (204)
T ss_pred --------HHHHHHHHHHHhhhhheEeecccccccccCCCCCcccCHHHHHHhCcccCCCCCHHHHHhcchhhHHHHhcC
Confidence 223445555555 688889999999998643 4557799999999999998889999999999999999999
Q ss_pred CCCCccchhhhhHHHHHHHHHcCC
Q 013209 379 PRLPRCQLRKISPVVRDLCKKHNM 402 (447)
Q Consensus 379 P~vP~~~L~~~~~~v~~~~~~~g~ 402 (447)
|+||+++||+++++||+.|+|+|+
T Consensus 181 P~ip~~~l~~~~~~v~~~~~~~gv 204 (204)
T cd03506 181 PTMPRHNYPKVAPLVRELCKKHGL 204 (204)
T ss_pred CCchhhhHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999986
No 5
>PLN02598 omega-6 fatty acid desaturase
Probab=100.00 E-value=4.8e-37 Score=303.66 Aligned_cols=308 Identities=17% Similarity=0.219 Sum_probs=204.1
Q ss_pred hhHHHHHHHHHcccCCCCchhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhcccCccccccChh
Q 013209 91 DYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPK 170 (447)
Q Consensus 91 ~y~~lr~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llg~~~~~~~~l~Hd~~H~~~~~~~~ 170 (447)
..+++|+.+-+ .+|++++...+..++..++++++++++.. ..+|+..+++.+++|..+.++..++|||+|++++++++
T Consensus 79 tl~~i~~aiP~-~~F~~s~~rs~~~l~~~i~~~~~~~~~~~-~~~w~~~~l~~~~~G~~~~~l~vl~Hec~H~s~~~~~~ 156 (421)
T PLN02598 79 TLKDVVKTLPK-EVFEIDDFKAWKTVAITVTSYALGLAAIA-VAPWYLLPLAWAWLGTAITGFFVIGHDCGHNSFSKNQL 156 (421)
T ss_pred CHHHHHHhCCH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCHH
Confidence 35678888765 49999998888877777666655554332 23455555666788998888888999999999999999
Q ss_pred HHHHHHHHHhhhcCCcchhhhccccccccccccCCCCCCCCCCCcchheehhhhccccchhcccccCcchhHhHHhhhch
Q 013209 171 FNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDPVARFLVSYQH 250 (447)
Q Consensus 171 ~N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn~~~~DpD~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 250 (447)
+|+++|.+++.++ +.|+..||..|+.||++||..++|||... .+++++++. ..+.+...+
T Consensus 157 lN~~vG~~~~~~l-l~p~~~wr~~H~~HH~~tn~~~~D~~~~p-----~t~~e~~~~-----------~~~~r~l~~--- 216 (421)
T PLN02598 157 VEDIVGTIAFTPL-IYPFEPWRIKHNTHHAHTNKLVMDTAWQP-----FRPHQFDNA-----------DPLRKAMMR--- 216 (421)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHccCcCCCCCCCCcCC-----cCHHHHhhc-----------CHHHHHHHH---
Confidence 9999999877655 89999999999999999999999998764 233333221 111122111
Q ss_pred hhHHHHhhhhhHHHHHHH-H-HHHHhcCCCCchHHHHHHHHHHH-HHHHHHhhcCCchhHHHHHHHHHHHHhh-hhhhhh
Q 013209 251 WTFYPVMCVARVNLYLQT-L-LLLFSKRKVPDRALNIMGTLVFW-TWFPLLVSYLPNWPERVMFVMASFTVTA-IQHIQF 326 (447)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~l~~~~ 326 (447)
+...|++.+......... + ...+.++...+.....+.+.+++ ++++.+....+.+ ..+.+++++.++.+ ++.+++
T Consensus 217 ~~~GP~yl~~~~~~~~~~hf~~~~f~~~er~~v~~S~~~v~~~~~~~l~~~~~~~G~~-~~~~~ylvP~Lv~~~wl~~it 295 (421)
T PLN02598 217 AGMGPLWWWASIGHWLFWHFDLNKFRPQEVPRVKISLAAVFAFMALGLPPLLYTTGPV-GFVKWWLMPWLGYHFWMSTFT 295 (421)
T ss_pred HhHhHHHHHHhhhcceeeccCcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 111122211111100000 0 00011111111112222222221 2223222233433 34456677777777 688888
Q ss_pred ccCCCcccccCCCCCCCcHHHHHHhcccCCCCCchhhhhhcccCcccccccCCCCCccchhhhhHHHHHHHHHcCCCccc
Q 013209 327 CLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRS 406 (447)
Q Consensus 327 ~~~H~~~~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~l~~glnyHieHHlfP~vP~~~L~~~~~~v~~~~~~~g~~Y~~ 406 (447)
+++|..+++...+.++++|.+.|+.+|++++.+.|+++|++|+|||++||+||+||+||||++++.+|+...++ |++
T Consensus 296 ~lhHt~p~ip~~~~~eW~~~~~al~~Tv~~~~~~~~~~L~hnIn~HV~HHLfP~IP~Y~lpea~~alk~~~g~~---y~~ 372 (421)
T PLN02598 296 MVHHTAPHIPFKQAREWNAAQAQLNGTVHCDYPAWIEFLCHDISVHIPHHISSKIPSYNLRKAHASLQENWGKH---LNK 372 (421)
T ss_pred HHhhcCCCCCccccccccHhhhhhcCceecCCcHHHHHHHcCCccchhhhcCCCCCcchHHHHHHHHHHHhccc---ccc
Confidence 99999988765555677778888888989887888999999999999999999999999999999999876653 444
Q ss_pred c-cHHHHHHHHHHHHHHHH
Q 013209 407 L-SFFEANVWTIRTLRGAA 424 (447)
Q Consensus 407 ~-~~~~~~~~~~~~l~~~~ 424 (447)
. ..++++++..+.++-+.
T Consensus 373 ~~~~~~~l~~~~~~C~~~d 391 (421)
T PLN02598 373 ATFNWRLMKTILTQCHVYD 391 (421)
T ss_pred CchhHHHHHHHhhheEEEc
Confidence 4 45777877777665443
No 6
>PLN02498 omega-3 fatty acid desaturase
Probab=100.00 E-value=1.3e-35 Score=291.03 Aligned_cols=314 Identities=14% Similarity=0.184 Sum_probs=200.6
Q ss_pred hhHHHHHHHHHcccCCCCchhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhcccCccccccChh
Q 013209 91 DYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPK 170 (447)
Q Consensus 91 ~y~~lr~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llg~~~~~~~~l~Hd~~H~~~~~~~~ 170 (447)
..+++|+.+.+ .+|+++++..+..++..+++.++.+++.....+|+...+..++.|..+.++++++|||+|+++|++++
T Consensus 103 tl~dir~aIP~-hcF~~s~~rs~~yv~~d~~vi~~l~~~a~~~~~w~~wpl~w~~~G~~~~gL~vl~HDcgHgsf~~~k~ 181 (450)
T PLN02498 103 NLADIRAAIPK-HCWVKNPWRSMSYVVRDVAVVFGLAAAAAYFNNWVVWPLYWFAQGTMFWALFVLGHDCGHGSFSNNPK 181 (450)
T ss_pred CHHHHHHhCCH-HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhccccccccChH
Confidence 46788888876 48999888777766666555444443333334555556677788999988888999999999999999
Q ss_pred HHHHHHHHHhhhcCCcchhhhccccccccccccCCCCCCCCCCCcchheehhhhccccchhcccccCcchhHhHHhhhch
Q 013209 171 FNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDPVARFLVSYQH 250 (447)
Q Consensus 171 ~N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn~~~~DpD~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 250 (447)
+|+++|.+++.++ +.|+.+||..|+.||++||+.++||++.. . ++++.+.+... .++.+....++
T Consensus 182 lNd~vG~ll~~~l-l~py~~Wr~sH~~HH~~Tn~~e~D~~~~P--~---t~~~y~~l~~~--------~~~~~~~~~~~- 246 (450)
T PLN02498 182 LNSVVGHLLHSSI-LVPYHGWRISHRTHHQNHGHVENDESWHP--L---SEKIYKSLDKV--------TRTLRFTLPFP- 246 (450)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHhcCCCCCCCCCCCCc--c---hHHHHHhcccc--------chHHHHHHHHH-
Confidence 9999999887655 89999999999999999999999998643 1 33333221100 00011111111
Q ss_pred hhHHHHhhhhhHHH----HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhh-hhhhh
Q 013209 251 WTFYPVMCVARVNL----YLQTLLLLFSKRKVPDRALNIMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTA-IQHIQ 325 (447)
Q Consensus 251 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~l~~~ 325 (447)
+.-++++.+.+... .+.....++.++...+.....++.++...++..+....|.+ ..+.+++++.++.+ ++.++
T Consensus 247 ~~g~p~YL~~~~~g~~~sHF~p~s~lF~~~er~~V~~S~~~~~~~~~~l~~l~~~~G~~-~~l~~Y~vP~lv~~~WL~~i 325 (450)
T PLN02498 247 MLAYPFYLWSRSPGKKGSHFHPDSDLFVPKERKDVITSTACWTAMAALLVCLSFVMGPI-QMLKLYGIPYWIFVMWLDFV 325 (450)
T ss_pred HHHHHHHHhhhccCCcCcccCCCcccCChhhhhheeeehHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHh
Confidence 11112221111100 00000001111111111122233333333333333344533 34455566666666 78888
Q ss_pred hccCCCcc--cccCCCCCCCcHHHHHHhcccCCCCCchhhhhhcccCcccccccCCCCCccchhhhhHHHHHHHHHcCCC
Q 013209 326 FCLNHFAA--NVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMP 403 (447)
Q Consensus 326 ~~~~H~~~--~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~l~~glnyHieHHlfP~vP~~~L~~~~~~v~~~~~~~g~~ 403 (447)
++++|+.. +...-+.++++|.+.|+ +|.|.+. .|++++++++++|+.||+||+||+|||+++++.+|+...++-.
T Consensus 326 TyLhHt~~~~~iP~y~~~eWs~~rGaL-~TvDR~y-g~i~~l~H~I~tHV~HHlf~~IPhYhl~eAt~aiK~~lg~yy~- 402 (450)
T PLN02498 326 TYLHHHGHEDKLPWYRGKEWSYLRGGL-TTLDRDY-GWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR- 402 (450)
T ss_pred hhhcccCCCCCCCCCCCCCcchhhccc-eeecCcc-cchhhhhcCcccchhhhccCCCCCcCHHHHHHHHHHHhHHhee-
Confidence 89999843 33333455888899988 6777765 4899999999999999999999999999999999999888732
Q ss_pred ccccc------HHHHHHHHHHHHHHHH
Q 013209 404 YRSLS------FFEANVWTIRTLRGAA 424 (447)
Q Consensus 404 Y~~~~------~~~~~~~~~~~l~~~~ 424 (447)
+...+ +++++.+..+.++-+.
T Consensus 403 e~~~~~~~p~~~~~~l~r~~~~c~~v~ 429 (450)
T PLN02498 403 EPKKSGPLPFHLLGSLIRSMKQDHYVS 429 (450)
T ss_pred cCCCCCCchhHHHHHHHHHhcceEEEe
Confidence 33333 6788777777765443
No 7
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=100.00 E-value=4.1e-35 Score=285.70 Aligned_cols=298 Identities=16% Similarity=0.217 Sum_probs=172.1
Q ss_pred hHHHHHHHHHcccCCCCchhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhcccCccccccChhH
Q 013209 92 YRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKF 171 (447)
Q Consensus 92 y~~lr~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llg~~~~~~~~l~Hd~~H~~~~~~~~~ 171 (447)
...++.++.++ ..+++.......++..+++.++.........+|+...++.++.|.....++.++|||+||+++|++|+
T Consensus 18 l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~~~~~~~l~~~~~v~Hd~~Hgs~~~~r~i 96 (343)
T COG3239 18 LDSIRARLPKP-RTRRDAIAILITFLALAGLWALLALSLAYWPSWWLLPLALLLAGLLLTGLFSVGHDCGHGSFFKNRWI 96 (343)
T ss_pred hhhHHhhCccc-cccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhhhhhH
Confidence 44555555543 34444444333333333333333222223333444444444555556777779999999999999999
Q ss_pred HHHHHHHHhhhcCCcchhhhccccccccccccCCCCCCCCCCCcchheehhhhccccchhcccccCcchhHhHHhhhchh
Q 013209 172 NKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDPVARFLVSYQHW 251 (447)
Q Consensus 172 N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn~~~~DpD~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 251 (447)
|+++|.+++.+. +.|+..||..|+.||++||+.+.|||.... .+... ++....++.+
T Consensus 97 Nd~ig~l~~~~~-~~p~~~wR~~H~~HH~~t~~~~~d~~~~~~-----~~~~~-----------------~~~~l~~~~i 153 (343)
T COG3239 97 NDLIGHLAAALL-LAPPVFWRISHNQHHAHTNILDDDPETYVS-----YPEQL-----------------RRGPLRFQLI 153 (343)
T ss_pred HHHHHHHHHHHH-hcChhhhhhhHHHhhcccCCCCCCHHHHHh-----Cchhh-----------------hhhhHHHHHH
Confidence 999999877655 688999999999999999999977665321 22211 1122223332
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHhcCCCCchHHHHHH-HHHHHHHHHHHhhcCCchhHHHHHH-HHHHHHhh-hhhhhhcc
Q 013209 252 TFYPVMCVARVNLYLQTLLLLFSKRKVPDRALNIMG-TLVFWTWFPLLVSYLPNWPERVMFV-MASFTVTA-IQHIQFCL 328 (447)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~-l~~~~~~~-~l~~~~~~ 328 (447)
.....+......+....+... .+...+....+.+. ++...+.+.. .....+..++ +++.++.+ +....+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~l~~~~~~~p~l~~~~~~~~~~~~ 227 (343)
T COG3239 154 RLPWLAFGFGPRWALLHFELL-EKLFKRSGKAPKAAALATLLAAIGL-----AALLALAFFWGLIPLLLVGLWLVLVLFV 227 (343)
T ss_pred HHHHHHHhhhhhhhhhhhhhh-hhccCCcccchHHHHHHHHHHHHHH-----HHHHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 222221111111111111111 00001100011111 1111111110 0011112222 34444555 45566667
Q ss_pred CCCcccccCCCCCCCcHHHHHHhcccCCCCCchhhhhhcccCcccccccCCCCCccchhhhhHHHHHHHHHcCCCccccc
Q 013209 329 NHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLS 408 (447)
Q Consensus 329 ~H~~~~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~l~~glnyHieHHlfP~vP~~~L~~~~~~v~~~~~~~g~~Y~~~~ 408 (447)
.|...........+.+|...|+.+|+|++.+++++|+++|+|||+|||+||+||+|+||++++++++.|.+.|+ +.+.+
T Consensus 228 ~h~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~l~~n~nyH~~HHl~P~vP~y~lp~~~~~~~~~~~~~~~-~~~~~ 306 (343)
T COG3239 228 HHTFDLLPHHGLEDWQWSDRALNARSNVDAPPLLRFLTGNINYHVEHHLFPDVPWYRLPRAHRLIKEALGERGL-TIYTG 306 (343)
T ss_pred hcccccccccccccchHHHHHHhccCccCchHHHHHhcCCccccHhhhCCCCCchhhHHHHHHHHHHHcCcCCc-hhhhh
Confidence 77755554344456778999999999999999999999999999999999999999999999999999999984 33344
Q ss_pred HHHHHHHHHHHH
Q 013209 409 FFEANVWTIRTL 420 (447)
Q Consensus 409 ~~~~~~~~~~~l 420 (447)
+.+-......++
T Consensus 307 y~~~~~~~~~~~ 318 (343)
T COG3239 307 YREFKLATLWQL 318 (343)
T ss_pred hhhhhhccHHHH
Confidence 444443333333
No 8
>PLN02505 omega-6 fatty acid desaturase
Probab=100.00 E-value=2.3e-34 Score=281.07 Aligned_cols=313 Identities=13% Similarity=0.107 Sum_probs=200.3
Q ss_pred hhHHHHHHHHHcccCCCCchhhHHHHHHHHHHHHHHHHHHh----cchhh---HHHHHHHHHHHHHHHHHHhhhcccCcc
Q 013209 91 DYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVL----CCESV---WAHLGSGMLLGFLWIQSAYVGHDSGHY 163 (447)
Q Consensus 91 ~y~~lr~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~l~~~llg~~~~~~~~l~Hd~~H~ 163 (447)
..+++|+.+.+ .+|++++...+..++..+++.++++++.. ..+++ ....+..+++|..+.++..++|||+|+
T Consensus 32 tl~~ir~aiP~-~~f~~s~~rs~~~v~~d~~~i~~~~~~a~~~~~~~p~~~~~~l~~~~~~~~G~~~~~l~vl~HDcgH~ 110 (381)
T PLN02505 32 TLGDIKKAIPP-HCFKRSVLRSFSYLVYDLLIAALLYYVATNYIPLLPGPLSYVAWPLYWAAQGCVLTGVWVIAHECGHH 110 (381)
T ss_pred cHHHHHHhCCH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 46788888866 48999988777766666665555443222 11111 122245778899888888899999999
Q ss_pred ccccChhHHHHHHHHHhhhcCCcchhhhccccccccccccCCCCCCCCCCCcchheehhhhccccchhcccccCcchhHh
Q 013209 164 QVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDPVAR 243 (447)
Q Consensus 164 ~~~~~~~~N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn~~~~DpD~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (447)
++|+++++|+++|.+++.++ +.|+.+||..|+.||++||+.++||+.. | ..++..+.+ .+.+ ..
T Consensus 111 s~~~~~~lN~~vG~i~~~~l-l~p~~~Wr~~H~~HH~~tn~~~~D~~~~--P---~~~~~~~~~-----~~~~-----~~ 174 (381)
T PLN02505 111 AFSDYQWLDDTVGLVLHSAL-LVPYFSWKYSHRRHHSNTGSLERDEVFV--P---KKKSALPWY-----SKYL-----NN 174 (381)
T ss_pred hhhCChHHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhccCCCCCCcccc--C---cCHHHHhHH-----HHHh-----cC
Confidence 99999999999999887755 8999999999999999999999998743 2 111111000 0000 00
Q ss_pred HHhhhchh-----hHHHHhhhhhHHHHH-HHHHHHHhcCC---CCchH----HHHHHHHHHHHHHHHHhhcCCchhHHHH
Q 013209 244 FLVSYQHW-----TFYPVMCVARVNLYL-QTLLLLFSKRK---VPDRA----LNIMGTLVFWTWFPLLVSYLPNWPERVM 310 (447)
Q Consensus 244 ~~~~~q~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 310 (447)
.+.++... .-++++.+....... .....-+.... .++.+ .+.+.+++.+..+..+....| +..++.
T Consensus 175 p~~~~~~~~~~~~~G~p~yl~~~~~g~~~~~~~~hf~p~s~lf~~~er~~v~~S~~~i~~~~~~l~~~~~~~G-~~~~l~ 253 (381)
T PLN02505 175 PPGRLLHIVVQLTLGWPLYLAFNVSGRPYDRFACHFDPYSPIFNDRERLQIYISDAGILAVSFGLYRLAAAKG-LAWVLC 253 (381)
T ss_pred hHHHHHHHHHHHHhHHHHHHHhhhcCCCCCcccccCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cHHHHH
Confidence 11111110 001111110000000 00000000000 01111 122222333333332323345 455566
Q ss_pred HHHHHHHHhh-hhhhhhccCCCcccccCCCCCCCcHHHHHHhcccCCCCCchhhhhhcccC-cccccccCCCCCccchhh
Q 013209 311 FVMASFTVTA-IQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQ-FQLEHHLFPRLPRCQLRK 388 (447)
Q Consensus 311 ~~l~~~~~~~-~l~~~~~~~H~~~~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~l~~gln-yHieHHlfP~vP~~~L~~ 388 (447)
+++++.++.+ ++.++++++|..+++...++++++|.+.|+. |.|.+. .++++++++++ +|+.||+||+||+|||++
T Consensus 254 ~y~vP~lv~~~wlv~itylqHt~~~ip~~~~~~W~~~rgAl~-tvdr~y-g~~~~l~h~I~~~Hv~HHl~srIP~Y~l~e 331 (381)
T PLN02505 254 VYGVPLLIVNAFLVLITYLQHTHPALPHYDSSEWDWLRGALA-TVDRDY-GILNKVFHNITDTHVAHHLFSTMPHYHAME 331 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCccCCCCcChhhccce-eccCcc-hHHHHHHccCCcccchhhccCCCCCCCHHH
Confidence 7777777777 7999999999999987666788899999995 655443 58999999996 999999999999999999
Q ss_pred hhHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHH
Q 013209 389 ISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLRGAA 424 (447)
Q Consensus 389 ~~~~v~~~~~~~g~~Y~~~~~~~~~~~~~~~l~~~~ 424 (447)
+++.+|+...++ +.|+..++++++.+..+.++-+.
T Consensus 332 A~~aik~~lg~~-y~~~~~~~~~~l~~~~~~C~~v~ 366 (381)
T PLN02505 332 ATKAIKPILGEY-YQFDGTPVYKALWREAKECIYVE 366 (381)
T ss_pred HHHHHHHHhHHH-hcCCCCcHHHHHHHHhcceEEeC
Confidence 999999999987 44555578999988888876554
No 9
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=100.00 E-value=7.6e-34 Score=261.28 Aligned_cols=214 Identities=19% Similarity=0.322 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhcccCccccccChhHHHHHHHHHhhhcCCcchhhhcc
Q 013209 114 CALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKW 193 (447)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llg~~~~~~~~l~Hd~~H~~~~~~~~~N~~~g~~~~~~~~g~s~~~wr~ 193 (447)
..++..+++.++++++.....+++..+++.+++|....++..++|||+|++++|++++|+++|.+++. +.+.|+..||.
T Consensus 8 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~l~He~~H~~~~~~~~~N~~~g~~~~~-~~~~p~~~w~~ 86 (222)
T cd03507 8 SYLAPDILLLALLALAASLLLSWWLWPLYWIVQGLFLTGLFVLGHDCGHGSFSDNRRLNDIVGHILHS-PLLVPYHSWRI 86 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhccCCcccccchhHHHHHHHHHHH-HHhCChHHHHH
Confidence 34444444444444332233566777888889999999999999999999999999999999997755 45899999999
Q ss_pred ccccccccccCCCCCCCCCCCcchheehhhhccccchhcccccCcchhHhHHhhhchhhHHHHhhhhhHHHHHHHHHHHH
Q 013209 194 THNAHHIACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDPVARFLVSYQHWTFYPVMCVARVNLYLQTLLLLF 273 (447)
Q Consensus 194 ~H~~HH~~tn~~~~DpD~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 273 (447)
.|+.||++||+.++|||... . .+.+..+.... .+.....|.++.
T Consensus 87 ~H~~HH~~~~~~~~D~~~~p--~---~~~~~~~~~~~-----------~~y~~~~~~~~~-------------------- 130 (222)
T cd03507 87 SHNRHHAHTGNLEGDEVWVP--V---TEEEYAELPKR-----------LPYRLYRNPFLM-------------------- 130 (222)
T ss_pred HHHHHHhccCCCCCCCcccC--c---CHHHhhccccc-----------chHHHHHHHHHH--------------------
Confidence 99999999999999999753 1 22221110000 000000010000
Q ss_pred hcCCCCchHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhh-hhhhhhccCCCcccccCCCCCCCcHHHHHHhc
Q 013209 274 SKRKVPDRALNIMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTA-IQHIQFCLNHFAANVYLGPPKGNDWFEKQTSG 352 (447)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~H~~~~~~~~~~~~~~~~~~q~~~ 352 (447)
....+. +..+. . .+.+++++.++.+ ++.+.++++|..++....++++.+|+..|+.+
T Consensus 131 --------------~~~g~~-~~~~~------~-~~~~~~ip~l~~~~~l~~~t~l~H~~~~~~~~~~~~w~~~~~q~~~ 188 (222)
T cd03507 131 --------------LSLGWP-YYLLL------N-VLLYYLIPYLVVNAWLVLITYLQHTFPDIPWYRADEWNFAQAGLLG 188 (222)
T ss_pred --------------HHHHHH-HHHHH------H-HHHHHHhHHHHHHHHHHeeeEecCCCCCCCCcCccccchhhhccee
Confidence 000000 00000 0 3445566666666 68888999999998865556677888999999
Q ss_pred ccCCCCCchhhhhhcccCcccccccCCCCCccch
Q 013209 353 TLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQL 386 (447)
Q Consensus 353 s~~~~~~~~~~~l~~glnyHieHHlfP~vP~~~L 386 (447)
|+|++.+++++++++|+|||+|||+||+||+|+|
T Consensus 189 t~~~~~~~~~~~l~~~i~~hv~HHlfP~iP~y~l 222 (222)
T cd03507 189 TVDRDYGGWLNWLTHIIGTHVAHHLFPRIPHYNL 222 (222)
T ss_pred eeeccccHHHHHHhcCCCcccchhcCCCCCcCcC
Confidence 9999999999999999999999999999999986
No 10
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=100.00 E-value=2.3e-34 Score=271.31 Aligned_cols=250 Identities=23% Similarity=0.412 Sum_probs=166.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCccccccChhHHHHHHHHHhhhcCCcchhhhccccccccccccCCCCCCCCCCCc
Q 013209 136 VWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIP 215 (447)
Q Consensus 136 ~~~~~l~~~llg~~~~~~~~l~Hd~~H~~~~~~~~~N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn~~~~DpD~~~~p 215 (447)
+++.+++.++.|..+.+++.++||++|+++++++++|+++|.+++.+ .+.|+..||..|+.||+++|++++|||....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~H~~~H~~~~~~~~~n~~l~~~~~~~-~~~~~~~wr~~H~~HH~~~~~~~~Dpd~~~~- 80 (257)
T PF00487_consen 3 WWWWLLALLLLGLSFARLFGLAHDAGHGAFFRSRWLNDLLGRLLGLP-IGGPYSSWRISHNRHHHYTNNPDRDPDSWTR- 80 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccChHHHHHHHHHHHH-hcCCHhHhheeeeccccccCCccccCccchh-
Confidence 55566777777888888888999999999999999999999987765 5888889999999999999999999998763
Q ss_pred chheehhhhccccchhcccccCcchhHhHHhhhchhhHHHHhhhhhHHHHHHHHHHHHhcCCCCch----HHHHHHHHHH
Q 013209 216 VFAVSTRLFNSITSVFYGRKLDFDPVARFLVSYQHWTFYPVMCVARVNLYLQTLLLLFSKRKVPDR----ALNIMGTLVF 291 (447)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 291 (447)
.....+. .+....++.+.+..+..+...................+.. .......++.
T Consensus 81 --~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (257)
T PF00487_consen 81 --RLPPHQP-----------------WRPLFSYRRFLFRFLLSLFFPIWYFIFFFRKRRMRRRRKRPRRYLILAALLLAL 141 (257)
T ss_pred --hhhhhhh-----------------hhhhhhhhhccccccccccccchhhhhhccccccccccccchhHHHHHHHhhhh
Confidence 0001000 1122223333322221111111110000000000000111 1122222222
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHhhhhhhhhccCCCcccccCCCCCCCcHHHHHHhcccCCCCCchhhhhhcccCc
Q 013209 292 WTWFPLLVSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQF 371 (447)
Q Consensus 292 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~H~~~~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~l~~glny 371 (447)
++.+.+.+.....+..+++++++..+...++.+...++|.+++. .+.+...++...|+.+|+|...+.+++++++|+||
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (257)
T PF00487_consen 142 LLALLAALFFFSPWWALLLFLLPFLIGSFFLAFVTYLEHYGLDP-DDNEDTRDFYYRQLPGSSNVHNSWWLNWLTGGLNY 220 (257)
T ss_pred hhhhhhhhcccccccchhHHHHHHhHHHHHHHHhhHHhhhcccc-cccccccceecccccccccccCchhhhccccCCCC
Confidence 22222222333334455555555554444566666789999875 34556778889999999998888999999999999
Q ss_pred ccccccCCCCCccchhhhhHHHHHHHHHcCCCcccc
Q 013209 372 QLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSL 407 (447)
Q Consensus 372 HieHHlfP~vP~~~L~~~~~~v~~~~~~~g~~Y~~~ 407 (447)
|+|||+||+||+++||++++++++.|++++++|.++
T Consensus 221 H~~HHl~P~vp~~~l~~~~~~~~~~~~~~~~~y~~~ 256 (257)
T PF00487_consen 221 HIEHHLFPGVPWYNLPEAHPILKEVCPEYGVPYNEF 256 (257)
T ss_pred hHHhCCCCCcCHHHHHHHHHHHHHHHHHcCCceecC
Confidence 999999999999999999999999999999999875
No 11
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=100.00 E-value=1.4e-33 Score=270.75 Aligned_cols=264 Identities=14% Similarity=0.182 Sum_probs=164.0
Q ss_pred HHHHHcccCCCCchhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhcccCccccccChhHHHHHH
Q 013209 97 IEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQ 176 (447)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llg~~~~~~~~l~Hd~~H~~~~~~~~~N~~~g 176 (447)
+++++ +.++++......++...++++++.++.....++|+.+++++++|..+..+..++|||+|++++++|++|+++|
T Consensus 4 ~~~~~--L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~He~~H~~~~~~~~~N~~~g 81 (285)
T cd03511 4 QELKQ--LMQRSDAPGLLDTALWLGALAVSGILIAWTWGSWWALPAFLVYGVLYAALFARWHECVHGTAFATRWLNDAVG 81 (285)
T ss_pred HHHHH--HhCCcchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHH
Confidence 44554 7777777777766665555444433333334556666777888888887777999999999999999999999
Q ss_pred HHHhhhcCCcchhhhccccccccccccCCCCCCCCCCCcchheehhhhccccchhcccccCcchhHhHHhhhchhhHHHH
Q 013209 177 LISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDPVARFLVSYQHWTFYPV 256 (447)
Q Consensus 177 ~~~~~~~~g~s~~~wr~~H~~HH~~tn~~~~DpD~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 256 (447)
.+++ .+.|.|+..||..|+.||++||++++|||.... .+..+ .+.+..+..+.++ .
T Consensus 82 ~l~~-~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~~-----~~~~~-----------------~~~~~~~~g~~~~-~ 137 (285)
T cd03511 82 QIAG-LMILLPPDFFRWSHARHHRYTQIPGRDPELAVP-----RPPTL-----------------REYLLALSGLPYW-W 137 (285)
T ss_pred HHHH-HHhcCChHHHHHHHHHHhcCcCCCCCCCCCCCC-----CchHH-----------------HHHHHHHhChHHH-H
Confidence 9755 455999999999999999999999999998641 11111 0111100000000 0
Q ss_pred hhhhhHHHHHHHHHHHHhcCCC----Cch----HHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhh-hhhhhhc
Q 013209 257 MCVARVNLYLQTLLLLFSKRKV----PDR----ALNIMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTA-IQHIQFC 327 (447)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~ 327 (447)
..+..+ .........+... +.+ ..+...+++.++.+..++...+.+ ..+.+++++.+++. ++.++..
T Consensus 138 ~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~~wllP~l~~~~~~~~~~~ 213 (285)
T cd03511 138 GKLRTV---FRHAFGAVSEAEKPFIPAEERPKVVREARAMLAVYAGLIALSLYLGSP-LLVLVWGLPLLLGQPILRLFLL 213 (285)
T ss_pred HHHHHH---HHHHhcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0000000000000 011 122222333344333333334543 34455667666655 5777778
Q ss_pred cCCCcccccCCCCCCCcHHHHHHhcccCCCCCchhhhhhcccCcccccccCCCCCccchhhhhHHHHHHHHHc
Q 013209 328 LNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKH 400 (447)
Q Consensus 328 ~~H~~~~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~l~~glnyHieHHlfP~vP~~~L~~~~~~v~~~~~~~ 400 (447)
++|.+++.. . + + ..+|++...+++.++++.|+|||+|||+||+||+|+||++++.+++.+.+.
T Consensus 214 ~eH~~~~~~-~-~---~-----~~~trs~~~~~~~~~l~~n~nyH~eHHl~P~vP~y~Lp~~h~~L~~~~~~~ 276 (285)
T cd03511 214 AEHGGCPED-A-N---D-----LRNTRTTLTNPPLRFLYWNMPYHAEHHMYPSVPFHALPKLHELIKDDLPVP 276 (285)
T ss_pred hhcCCCCcc-c-c---h-----hhhhhhhhhhHHHHHHHcCCchHHHHhcCCCCcHhHHHHHHHHHHHhCCCC
Confidence 899986531 1 1 1 334777766788999999999999999999999999999999999975543
No 12
>PLN02579 sphingolipid delta-4 desaturase
Probab=100.00 E-value=1e-31 Score=257.54 Aligned_cols=273 Identities=16% Similarity=0.198 Sum_probs=163.4
Q ss_pred hhhHHHHHHH-----HHcccCCCCchhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHh-hhcccCcc
Q 013209 90 KDYRRLYIEF-----AKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAY-VGHDSGHY 163 (447)
Q Consensus 90 ~~y~~lr~~v-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llg~~~~~~~~-l~Hd~~H~ 163 (447)
+..+++|+++ +.++++.+++....+.++++++.+.+++ .....+||+.+++++++|.++.+..+ ++|||+|+
T Consensus 21 ~~h~~rr~~il~~ype~~~l~~~d~~~~~k~~~~v~~~~~~~~--l~~~~~w~~~l~~a~~~~g~~~~~lf~~~HD~~Hg 98 (323)
T PLN02579 21 EPHASRRREILSKYPQIKELFGPDPWAFPKIAAVVLLQLCTAT--LLHDAGWPKILLVAYFFGGFLNHNLFLAIHELSHN 98 (323)
T ss_pred hhHHHHHHHHHHhchHhhcccCCCchHHHHHHHHHHHHHHHHH--HHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 3455566665 4567888888877776666655553332 22346677777766666665544445 78999999
Q ss_pred ccccChhHHHHHHHHHhhhcCCcchh-hhccccccccccccCCCCCCCCCCCcchheehhhhccccchhcccccCcchhH
Q 013209 164 QVMTSPKFNKIAQLISGNCLTGISIA-WWKWTHNAHHIACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDPVA 242 (447)
Q Consensus 164 ~~~~~~~~N~~~g~~~~~~~~g~s~~-~wr~~H~~HH~~tn~~~~DpD~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (447)
++||++++|+++|.++ +++.|.|+. +||..|+.||++||+++.|||+.+.. +.
T Consensus 99 ~~f~~~~~N~~lg~~~-~l~~g~~~~~~~~~~H~~HH~~~n~~~~D~Di~t~~-----E~-------------------- 152 (323)
T PLN02579 99 LAFKTPVYNRWLGIFA-NLPIGIPMSVTFQKYHLEHHRFQGVDGIDMDIPSQG-----EA-------------------- 152 (323)
T ss_pred hhcCCHHHHHHHHHHH-HHhhcCCHhHHHHHHHHHHccCCCCCCCCCCCCchh-----hH--------------------
Confidence 9999999999999965 666699887 79999999999999999999987621 10
Q ss_pred hHHhhhchhhHHHHhhhhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhh-h
Q 013209 243 RFLVSYQHWTFYPVMCVARVNLYLQTLLLLFSKRKVPDRALNIMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTA-I 321 (447)
Q Consensus 243 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~ 321 (447)
+.+.......++ ..+..+ +...+....+. .+...++.+..++..++.++++...| |..+ +|++++.++++ +
T Consensus 153 ~l~~~~~~~~~~--~~~~~~---f~~~rp~~~~~-~~~~~~~~in~~~~~~~~~~l~~~~G-~~~l-lyl~~~~~~~~~l 224 (323)
T PLN02579 153 RLVRNTLSKIVW--VFLQLF---FYALRPLFVNP-KPPGLWEFINLLTQIAFDAALVYFAG-WKSL-AYLILSTFLGGGL 224 (323)
T ss_pred HHHHHHHHHHHH--HHHHHH---HHHhhHHhhcc-CCchHHHHHHHHHHHHHHHHHHHHHC-HHHH-HHHHHHHHHhccc
Confidence 111111000000 000111 11111111111 12223344444433333333333344 4433 34444444443 2
Q ss_pred --hhhhhccCCCcccccCCCCCCCcHHHHHHhcccCCCCCchhhhhhcccCcccccccCCCCCccchhhhhHHHHHHHHH
Q 013209 322 --QHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKK 399 (447)
Q Consensus 322 --l~~~~~~~H~~~~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~l~~glnyHieHHlfP~vP~~~L~~~~~~v~~~~~~ 399 (447)
..-.+..+|+..... ..|.++. .+++|+++|+|||.|||+||+||+++||+++++..++.+.
T Consensus 225 hp~~g~~~~ehy~~~~~--------------~etysyy--g~ln~l~~NigYH~eHH~fP~IP~~~Lp~l~~~~pe~y~~ 288 (323)
T PLN02579 225 HPMAGHFISEHYVFNPG--------------QETYSYY--GPLNLLTWNVGYHNEHHDFPRIPGSKLHKVKEIAPEYYDN 288 (323)
T ss_pred ccccceeeccceeccCC--------------CCceeeh--hHHHHHhhcccccHhhcCCCCCchhhHHHHHHhCHHHHhC
Confidence 222233456654321 1133332 4679999999999999999999999999999887777553
Q ss_pred cCCCcccccHHHHHHHHH
Q 013209 400 HNMPYRSLSFFEANVWTI 417 (447)
Q Consensus 400 ~g~~Y~~~~~~~~~~~~~ 417 (447)
+|++ .|+...+.+.+
T Consensus 289 --l~~~-~sw~~~~~~fi 303 (323)
T PLN02579 289 --LKSY-KSWSQVIYMYI 303 (323)
T ss_pred --CCCc-CcHHHHHHHHH
Confidence 7666 56666665544
No 13
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=100.00 E-value=2.4e-32 Score=258.97 Aligned_cols=261 Identities=16% Similarity=0.192 Sum_probs=160.3
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHh-hhcccCccccccChhHHHHHHHHHhh
Q 013209 103 GMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAY-VGHDSGHYQVMTSPKFNKIAQLISGN 181 (447)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llg~~~~~~~~-l~Hd~~H~~~~~~~~~N~~~g~~~~~ 181 (447)
+++++++......++.+++++++++++. ..+||..+++++++|...++..+ ++|||+|+++||++++|+++|.++ +
T Consensus 10 ~L~~~~~~~~~~~~~~v~~~~~~~~~l~--~~sw~~~ll~a~vi~~~~~~~l~~l~Hd~~H~~~f~~~~~N~~~g~~~-~ 86 (289)
T cd03508 10 KLFGPDPLTKWVVLGVVLLQIITAYLLR--DSSWWKILLVAYFFGGTINHSLFLAIHEISHNLAFGKPLWNRLFGIFA-N 86 (289)
T ss_pred HhcCCCcchHHHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCChHHHHHHHHHH-H
Confidence 5999999988888888888777765443 45777777777777776655554 789999999999999999999964 5
Q ss_pred hcCCcchh-hhccccccccccccCCCCCCCCCCCcchheehhhhccccchhcccccCcchhHhHHhhhchhhHHHHhhhh
Q 013209 182 CLTGISIA-WWKWTHNAHHIACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDPVARFLVSYQHWTFYPVMCVA 260 (447)
Q Consensus 182 ~~~g~s~~-~wr~~H~~HH~~tn~~~~DpD~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 260 (447)
++.|.|+. +||..|+.||++||+++.|||+.+. ...+. +... ... +.. .
T Consensus 87 ~~~g~p~~~~~r~~H~~HH~~~n~~~~DpDi~~~----~~~~l--------~~~~-----~g~---------~~~----~ 136 (289)
T cd03508 87 LPIGVPYSISFKKYHLEHHRYLGEDGLDTDIPTE----FEGKL--------FSTV-----LGK---------AIW----V 136 (289)
T ss_pred HHhcCChhhHHHHHHHHhccCCCCCCCCCCcchH----HHHHH--------HhCc-----hHH---------HHH----H
Confidence 66799998 5999999999999999999999862 01111 1000 000 000 0
Q ss_pred hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhh---hhhhhccCCCcccccC
Q 013209 261 RVNLYLQTLLLLFSKRKVPDRALNIMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAI---QHIQFCLNHFAANVYL 337 (447)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~---l~~~~~~~H~~~~~~~ 337 (447)
.+...+...+.. ..+..+....++...+...++..+++...|. ..+ +|+++..+.+.. +...+..||.....
T Consensus 137 ~~~~~~~~~rp~-~~~~~~~~~~~~~n~~~~~~~~~~l~~~~G~-~~~-lyll~~~~~~~~~~p~~g~~i~Eh~~~~~-- 211 (289)
T cd03508 137 TLQPFFYALRPL-FVRPKPPTRLEVINIVVQITFDYLIYYFFGW-KSL-AYLLLGSFLGGGLHPLAGHFISEHYVFTG-- 211 (289)
T ss_pred HHHHHHHHhccc-ccCCCcchhHHHHHHHHHHHHHHHHHHHhCc-HHH-HHHHHHHHHHHhhcccccccccccccccc--
Confidence 000000001100 0111122233443333333333333333453 322 233333333321 12223345554321
Q ss_pred CCCCCCcHHHHHHhcccCCCCCchhhhhhcccCcccccccCCCCCccchhhhhHHHHHHHHHcCCCcccccHHHHHHHHH
Q 013209 338 GPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTI 417 (447)
Q Consensus 338 ~~~~~~~~~~~q~~~s~~~~~~~~~~~l~~glnyHieHHlfP~vP~~~L~~~~~~v~~~~~~~g~~Y~~~~~~~~~~~~~ 417 (447)
....|+++. .+++++++|+|||.|||+||+||+|+||+++++.+++.++ -+...++.+.+++.+
T Consensus 212 -----------~~~~t~S~y--~~~~~~~~n~~yH~~HH~~p~iP~~~Lp~~~~~~~~~~~~---~~~~~~y~~v~~~~~ 275 (289)
T cd03508 212 -----------KGQETYSYY--GPLNLLTFNVGYHNEHHDFPYIPGTRLPKLRKIAPEFYDN---LPQHTSWPRVLYDFI 275 (289)
T ss_pred -----------cCcCCccch--HHHHHHhhccChHHHhcCCCCCCcccHHHHHHHCHHHHhC---CCcCCCHHHHHHHHh
Confidence 122344443 3679999999999999999999999999999998887766 233357777666543
No 14
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=100.00 E-value=1.9e-32 Score=249.17 Aligned_cols=187 Identities=18% Similarity=0.192 Sum_probs=132.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhcccCccccccChhHHHHHHHHHhhhcCCcchhhhccccccccccccCCCCCCCCCC
Q 013209 134 ESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQH 213 (447)
Q Consensus 134 ~~~~~~~l~~~llg~~~~~~~~l~Hd~~H~~~~~~~~~N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn~~~~DpD~~~ 213 (447)
.+++..+++.++.|+...+++.++|||+|++++++|++|+++|.+++ ++.|.|+.+||..|+.||++||++++|||...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~Hda~H~~~~~~~~~N~~~g~~~~-~~~~~~~~~w~~~H~~HH~~~~~~~~DpD~~~ 97 (207)
T cd03514 19 ISYLPLWVCFILNTLSLHLAGTVIHDASHKAASRNRWINELIGHVSA-FFLGFPFPVFRRVHMQHHAHTNDPEKDPDHFL 97 (207)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHH-HHHhCCHHHHHHHHHHHhcCcCcCCcCccHHH
Confidence 44666677777778888888889999999999999999999999765 55699999999999999999999999999640
Q ss_pred CcchheehhhhccccchhcccccCcchhHhHHhhhchhhHHHHhhhhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 013209 214 IPVFAVSTRLFNSITSVFYGRKLDFDPVARFLVSYQHWTFYPVMCVARVNLYLQTLLLLFSKRKVPDRALNIMGTLVFWT 293 (447)
Q Consensus 214 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (447)
. .+. + . ..++.+
T Consensus 98 ----------~------------------~~~----------~--------------------------~----~~~~~~ 109 (207)
T cd03514 98 ----------L------------------EWL----------V--------------------------A----RSLFIT 109 (207)
T ss_pred ----------H------------------HHH----------H--------------------------H----HHHHHH
Confidence 0 000 0 0 000000
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHhh-hhhh-hhccCCCcccccCCCCCCCcHHHHHHhcccCCCCCchhhhhhcccCc
Q 013209 294 WFPLLVSYLPNWPERVMFVMASFTVTA-IQHI-QFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQF 371 (447)
Q Consensus 294 ~~~~l~~~~~~~~~~~~~~l~~~~~~~-~l~~-~~~~~H~~~~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~l~~glny 371 (447)
++.......+ ....+++++++.++.+ ++.+ ....+|.+.+. +.+|.. +++.. +++++|+++|+||
T Consensus 110 ~~~~~~~~~~-~~~~~l~~~iP~l~~~~~l~~~~~~~~H~~~~~------~~~~~~-----~~~~~-~~l~~~l~~~~ny 176 (207)
T cd03514 110 LLVIAILFGF-LWELLNLWFLPALIVGTYLALFFDWLPHHPFEE------TQRWDN-----SRVYP-SKLLNPLIMGQNY 176 (207)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHheeeCccCCCC------ccchhh-----hhccc-chhHheeecCCch
Confidence 1000001112 2234455566666665 5554 44678886432 123422 34333 6678999999999
Q ss_pred ccccccCCCCCccchhhhhHHHHHHHHHcCC
Q 013209 372 QLEHHLFPRLPRCQLRKISPVVRDLCKKHNM 402 (447)
Q Consensus 372 HieHHlfP~vP~~~L~~~~~~v~~~~~~~g~ 402 (447)
|+|||+||+||+||||++++.+++..++.|+
T Consensus 177 H~~HHL~P~IP~y~Lp~a~~~~~~~~~~~~~ 207 (207)
T cd03514 177 HLVHHLWPSIPWYRYPEAYYANKPLLDARGC 207 (207)
T ss_pred hHHHhCCCCCchhhhHHHHHHhHHHHhhcCC
Confidence 9999999999999999999999999999875
No 15
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.97 E-value=1.1e-30 Score=248.31 Aligned_cols=244 Identities=16% Similarity=0.092 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCccccccChhHHHHHHHHHhhhcCCcchhhhcccccccccccc--CCCCCCCCCCCcc
Q 013209 139 HLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACN--SLDYDPDLQHIPV 216 (447)
Q Consensus 139 ~~l~~~llg~~~~~~~~l~Hd~~H~~~~~~~~~N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn--~~~~DpD~~~~p~ 216 (447)
.+++.+++|+.......++|||+|+++||++++|+++|.+..+ + +.|+.+||.+|+.||++|| ++++|||+...
T Consensus 27 ~~~~~~~~~~~~~~~~~l~Hd~~Hg~~~~~~~~N~~~g~~~~~-l-~~p~~~wr~~H~~HH~~~nl~~~~~Dpd~~~~-- 102 (288)
T cd03509 27 LPLATLLLIPLAALHSSLQHELLHGHPTRSRWVNEALGYPPLA-L-WYPYTRYRDTHLAHHRDEDLTDPGDDPESNYL-- 102 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcccChHHHHHHHHHHHH-H-hcCHHHHHHHHHHHcCCCCCCCCCCCCcccee--
Confidence 3456666666666566799999999999999999999986443 2 5799999999999999999 55689998763
Q ss_pred hheehhhhccccchhcccccCcchhHh-HHhhhchhhHHHHhhh-hhHHHHHHHHHHHHhcCCCCchHHHHHH-HHHH-H
Q 013209 217 FAVSTRLFNSITSVFYGRKLDFDPVAR-FLVSYQHWTFYPVMCV-ARVNLYLQTLLLLFSKRKVPDRALNIMG-TLVF-W 292 (447)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~ 292 (447)
+++++++.. ...+ ....+|+.+..++++. ..+......-...+.++ .++...... .++. .
T Consensus 103 ---~~~~~~~~~-----------~~~r~~~~~~~~~~~~~l~gp~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 166 (288)
T cd03509 103 ---SPEQWARLP-----------RWQRALLRANNTLLGRLILGPPLGLIAFARDEFRALRAG--DRAALRAWLLHAALLA 166 (288)
T ss_pred ---cHHHHhhCc-----------HHHHHHHHHhhcchhHHhhhhHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHH
Confidence 333332211 1112 2333444433222111 11111111111111111 111111111 1111 1
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhh-hhhhhhccCCCcccccCCCCCCCcHHHHHHhcccCCCCCchhhhhhcccCc
Q 013209 293 TWFPLLVSYLPNWPERVMFVMASFTVTA-IQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQF 371 (447)
Q Consensus 293 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~H~~~~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~l~~glny 371 (447)
+.+..+... .++ ..++|++.....+. +..+..+.||...+. +. ..|..++.+.+++|+++|+||
T Consensus 167 ~~l~~~~~~-~~~-~~~~~~l~~~~la~~~~~~~~~~Eh~~~~~----~~---------~rs~~~~~~~~~~~l~~niny 231 (288)
T cd03509 167 PLLAWLQLS-AGI-PWWAYLLAVYYPALSLAKIRTFLEHRAHER----PR---------GRTVINEAGGPLRLLFLNNNL 231 (288)
T ss_pred HHHHHHHHH-hhH-HHHHHHHHHHHHHHHHHhhchHhhccCCCC----cc---------CCceeeeCcHHHHHHHhcCCc
Confidence 111111111 112 22333333333333 466677778887532 11 123334556678999999999
Q ss_pred ccccccCCCCCccchhhhhHHHHHHHHHcCCCcccccHHHHHHHHH
Q 013209 372 QLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTI 417 (447)
Q Consensus 372 HieHHlfP~vP~~~L~~~~~~v~~~~~~~g~~Y~~~~~~~~~~~~~ 417 (447)
|+|||++|+||+|+||++++.+++.+.+.+.-|...+|.+.++...
T Consensus 232 H~~HH~~P~vP~y~Lp~~h~~~~~~~~~~~~~~~~~~y~~~~~~~~ 277 (288)
T cd03509 232 HVVHHDLPTLPWYDLPRLYRARRDAYLRRNGGFVYRGYGELFRRHA 277 (288)
T ss_pred hHhhcCCCCCCcccHHHHHHHhHHHHhhcCCCccCCCHHHHHHHHh
Confidence 9999999999999999999999999888777777667766555443
No 16
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.97 E-value=1.5e-30 Score=230.11 Aligned_cols=160 Identities=21% Similarity=0.235 Sum_probs=125.2
Q ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHhhhcccCccccccChhHHHHHHHHHhhhcCCcchhhhccccccccccccCCCCC
Q 013209 129 GVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYD 208 (447)
Q Consensus 129 ~~~~~~~~~~~~l~~~llg~~~~~~~~l~Hd~~H~~~~~~~~~N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn~~~~D 208 (447)
+.....++++.+++.+++|..+.+++.++|||+|++++|++++|+++|.++.+++.|.|+..||..|+.||+++|+ ++|
T Consensus 11 ~~~~~~~~~~~~l~~~~~g~~~~~l~~l~Hea~H~~l~~~~~~N~~~g~~~~~~p~~~~~~~~r~~H~~HH~~~~~-~~D 89 (175)
T cd03510 11 LALAWPNWLAYLLAVLLIGARQRALAILMHDAAHGLLFRNRRLNDFLGNWLAAVPIFQSLAAYRRSHLKHHRHLGT-EDD 89 (175)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhhhhCCHHHHHHHHHHHhCccCC-CCC
Confidence 3334567888889999999999999999999999999999999999998766666799999999999999999999 669
Q ss_pred CCCCCCcchheehhhhccccchhcccccCcchhHhHHhhhchhhHHHHhhhhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 013209 209 PDLQHIPVFAVSTRLFNSITSVFYGRKLDFDPVARFLVSYQHWTFYPVMCVARVNLYLQTLLLLFSKRKVPDRALNIMGT 288 (447)
Q Consensus 209 pD~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (447)
||..
T Consensus 90 pd~~---------------------------------------------------------------------------- 93 (175)
T cd03510 90 PDLA---------------------------------------------------------------------------- 93 (175)
T ss_pred CcHH----------------------------------------------------------------------------
Confidence 9841
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhh--hhhhhhccCCCcccccCCCCCCCcHHHHHHhcccCCCCCchhhhhh
Q 013209 289 LVFWTWFPLLVSYLPNWPERVMFVMASFTVTA--IQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFH 366 (447)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~--~l~~~~~~~H~~~~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~l~ 366 (447)
.++++++++.++.. +..+....+|.+++...+ +. ..+|||+..+++.++|.
T Consensus 94 ------------------~~~~~W~~P~~~~~~~~~~~~~~~eH~~~~~~~~-~~--------~~~tr~~~~~~~~r~l~ 146 (175)
T cd03510 94 ------------------LYLLLWLVPLLTVFPLIGRIREIAEHAGVPADED-PD--------ARNTRTTFGGWIERLLF 146 (175)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCc-ch--------hhcCccccccHHHHHHH
Confidence 11122233333333 244455679998765311 11 26788888788888887
Q ss_pred c--ccCcccccccCCCCCccchhhhhHH
Q 013209 367 G--GLQFQLEHHLFPRLPRCQLRKISPV 392 (447)
Q Consensus 367 ~--glnyHieHHlfP~vP~~~L~~~~~~ 392 (447)
+ |+|||+|||+||+||+++||+++++
T Consensus 147 ~p~~~~YH~eHHl~P~vP~~~Lp~~h~~ 174 (175)
T cd03510 147 APHNINYHLEHHLFPAVPFYNLPKAHRI 174 (175)
T ss_pred cccCCcHHHHHhCCcCCchhhHHHHHHh
Confidence 5 9999999999999999999999875
No 17
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=99.96 E-value=4.7e-28 Score=220.90 Aligned_cols=185 Identities=18% Similarity=0.212 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHhhhcccCccccc-cChhHHHHHHHHHhhhcCCcchhhhccccccccccccCCCCCCCCCCCcchheeh
Q 013209 143 GMLLGFLWIQSAYVGHDSGHYQVM-TSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAVST 221 (447)
Q Consensus 143 ~~llg~~~~~~~~l~Hd~~H~~~~-~~~~~N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn~~~~DpD~~~~p~~~~~~ 221 (447)
.++.|.....+..++|||+|++++ +++++|+++|.+++.+..|.|+..||..|+.||++||++ +|||.... ++
T Consensus 36 ~~~~g~l~~glfi~~HDa~Hg~~~~~~~~~N~~iG~~~~~l~~g~~~~~~~~~H~~HH~~~~~~-~DpD~~~~-----~~ 109 (225)
T cd03513 36 VLLQTFLHTGLFIIAHDAMHGSLAPGNPRLNRAIGRLCLFLYAGFSYDRLLRKHHLHHRHPGTA-KDPDFHKG-----NP 109 (225)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHcCCCCCC-CCCCCCCC-----CC
Confidence 344455556665699999999999 799999999998766667999999999999999999998 79998752 11
Q ss_pred hhhccccchhcccccCcchhHhHHhhhchhhHHHHhhhhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhhc
Q 013209 222 RLFNSITSVFYGRKLDFDPVARFLVSYQHWTFYPVMCVARVNLYLQTLLLLFSKRKVPDRALNIMGTLVFWTWFPLLVSY 301 (447)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 301 (447)
.. +. .+|+.++ . +. .++.+.+.+...+..+..+. .
T Consensus 110 ~~--------------------~~----~wy~~f~---~---------------~y--~~~~qli~l~ivw~~~l~~~-~ 144 (225)
T cd03513 110 SG--------------------FL----PWYLHFM---S---------------NY--FGWRQLAILAAVWLLLLGLG-S 144 (225)
T ss_pred CC--------------------hH----HHHHHHH---H---------------hH--hHHHHHHHHHHHHHHHHHHH-c
Confidence 00 00 0110000 0 00 11122222222222222221 1
Q ss_pred CCchhHHHHHHHHHHHHhhh-hhhh-hccCCCcccccCCCCCCCcHHHHHHhcccCCCCCchhhhhh-cccCcccccccC
Q 013209 302 LPNWPERVMFVMASFTVTAI-QHIQ-FCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFH-GGLQFQLEHHLF 378 (447)
Q Consensus 302 ~~~~~~~~~~~l~~~~~~~~-l~~~-~~~~H~~~~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~l~-~glnyHieHHlf 378 (447)
.+ ...++.+++++.+++++ +.++ ..+.|...+...++ ..++++++.++|+++++ .+++||.|||+|
T Consensus 145 ~~-~~~~~~~~~~P~l~~~~~l~~f~T~lpH~~~~~~~~~----------~~~a~~~~~~~~~~~l~c~~fgyH~eHH~f 213 (225)
T cd03513 145 AP-LANLLLFWALPLILSSLQLFYFGTWLPHRPGRGGFAD----------RHRARSSRLSPVLSFLTCYHFGYHHEHHLS 213 (225)
T ss_pred cc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------cccceecCccHHHHHHHHHhcCcchhhccC
Confidence 23 34567788888888874 5444 56788765432111 12677777788999875 777799999999
Q ss_pred CCCCccchhhh
Q 013209 379 PRLPRCQLRKI 389 (447)
Q Consensus 379 P~vP~~~L~~~ 389 (447)
|+||||+||++
T Consensus 214 P~~Pw~~Lp~~ 224 (225)
T cd03513 214 PSTPWWRLPEL 224 (225)
T ss_pred CCCCcccCccc
Confidence 99999999987
No 18
>KOG2987 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=99.95 E-value=5.1e-27 Score=207.45 Aligned_cols=257 Identities=18% Similarity=0.234 Sum_probs=166.6
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHh-hhcccCccccccC--hhHHHHHHHHH
Q 013209 103 GMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAY-VGHDSGHYQVMTS--PKFNKIAQLIS 179 (447)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llg~~~~~~~~-l~Hd~~H~~~~~~--~~~N~~~g~~~ 179 (447)
.+++++|...+..++.+++.+.+++.+ -..+|.+.+..+.+.|.+..+... ..||.+|+..|++ +-.|+++|.+
T Consensus 35 ~Lfg~dp~~kwvv~~~Vi~Q~~~~~ll--~dl~W~~il~~AYf~gg~iNhsl~LAIHeiSHN~aFg~~rpl~NR~~g~f- 111 (324)
T KOG2987|consen 35 SLFGPDPNLKWVVLGMVILQILAAYLL--RDLDWKWILFIAYFFGGFINHSLTLAIHEISHNLAFGTNRPLYNRIFGFF- 111 (324)
T ss_pred HHhCCCcchHHHHHHHHHHHHHHHHHH--hcccHHHHHHHHHHhhhhhchhHHHHHHHhhhhhhcccCchHHHHHHHHh-
Confidence 388999988888777777776666533 345677777778888888877777 5699999999987 8999999984
Q ss_pred hhhcCCcchh-hhccccccccccccCCCCCCCCCCCcchheehhhhccccchhcccccCcchhH-hHHhhhchhhHHHHh
Q 013209 180 GNCLTGISIA-WWKWTHNAHHIACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDPVA-RFLVSYQHWTFYPVM 257 (447)
Q Consensus 180 ~~~~~g~s~~-~wr~~H~~HH~~tn~~~~DpD~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~q~~~~~~~~ 257 (447)
++++.|+|++ .++..|.+||+|.++++.|-|+.+.- ..+.+.. .++ -.+..+|.+++.+..
T Consensus 112 ANLPigvP~siSFkkYHleHHry~G~DgiDtDvPT~~----Ea~~f~t-------------~~~K~iw~~lQpfFY~fRP 174 (324)
T KOG2987|consen 112 ANLPIGVPMSISFKKYHLEHHRYLGVDGIDTDVPTRF----EAWLFDT-------------AFGKLIWVTLQPFFYAFRP 174 (324)
T ss_pred hcCcccCceeeeehhhhhHHhHhcCCccccCCCCchh----heehhhh-------------hhHHHHHHHHHHHHHhhhh
Confidence 6777798887 78999999999999999999998621 1111100 000 133444544432221
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhh-h--hhhhhccCCCccc
Q 013209 258 CVARVNLYLQTLLLLFSKRKVPDRALNIMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTA-I--QHIQFCLNHFAAN 334 (447)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~--l~~~~~~~H~~~~ 334 (447)
. +- .+.+....|++..++-...-..++..+| |. .+.|++.+.++++ + .+-.|..||+...
T Consensus 175 l--------------~i-~pkp~t~me~iN~iiQ~~fd~li~~f~G-~k-sl~Yll~~s~lg~gLHP~aGHFisEHY~f~ 237 (324)
T KOG2987|consen 175 L--------------FI-YPKPPTDMEFINTIIQLSFDLLIVYFFG-WK-SLAYLLASSFLGMGLHPIAGHFISEHYMFK 237 (324)
T ss_pred h--------------ee-cCCCchHHHHHHHHHHHHHHHHHHHHHh-HH-HHHHHHHHHHHcCCCCcccchhhHhhhhhc
Confidence 1 11 2233444666665554443333333345 44 3455555554443 3 4445555666543
Q ss_pred ccCCCCCCCcHHHHHHhcccCCCCCchhhhhhcccCcccccccCCCCCccchhhhhHHHHHHHHHcCCCcccccHHHHHH
Q 013209 335 VYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANV 414 (447)
Q Consensus 335 ~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~l~~glnyHieHHlfP~vP~~~L~~~~~~v~~~~~~~g~~Y~~~~~~~~~~ 414 (447)
.. ..|.++. ..+||++.|.+||+|||.||.||..+||++.++..|+.+ ++|-+ .|..+.+.
T Consensus 238 k~--------------~ETySYY--GplN~~tfNvGYH~EHHDFP~Ipg~~Lp~Vr~iApEyYd--~lp~~-~Sw~~vly 298 (324)
T KOG2987|consen 238 KG--------------QETYSYY--GPLNLLTFNVGYHVEHHDFPYIPGSRLPKVREIAPEYYD--NLPQH-KSWVGVLY 298 (324)
T ss_pred CC--------------ccceeee--cceeeEEEecccccccccCCCCCccccHHHHHhhHHHhc--Cchhh-chHHHHHH
Confidence 21 1233443 458999999999999999999999999999888777643 34322 34444444
Q ss_pred H
Q 013209 415 W 415 (447)
Q Consensus 415 ~ 415 (447)
+
T Consensus 299 d 299 (324)
T KOG2987|consen 299 D 299 (324)
T ss_pred H
Confidence 3
No 19
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=99.90 E-value=1.8e-24 Score=177.44 Aligned_cols=81 Identities=42% Similarity=0.722 Sum_probs=76.1
Q ss_pred cCCCCCHHHHhcccCCCCeEEEEcCEEEEcccccccccccccceecccCCChhHHHHhc-CchhHHHhhhhccCCccccC
Q 013209 4 EKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAY-HPGTAWQYLDKLFTGYYVQD 82 (447)
Q Consensus 4 ~~~~~~~~e~~~h~~~~~~~v~i~g~vyd~t~~~~~hpgg~~~i~~~~g~D~t~~f~~~-H~~~~~~~l~~~~vg~~~~~ 82 (447)
..+.||.+||++||+.+||||+|+|+|||||+|+++||||.+.|+.+||+|||+.|+.. ||..|+++|++|+|| ++.+
T Consensus 3 ~~k~~~~~EV~kHn~~~d~Wvii~gkVYDvT~Fl~eHPGG~~vLl~~AGkDaT~~F~~~gHS~~A~~ml~~y~ig-~~~~ 81 (124)
T KOG0537|consen 3 DLKYYTLSEVAKHNKKDDCWVIIHGKVYDVTSFLDEHPGGEDVLLEYAGKDATEAFEDVGHSKDAREMLEEYYIG-EVPT 81 (124)
T ss_pred ccccccHHHHHhhcCCCCeEEEECCEEEeccchhhhCCChHHHHHHHhchhhHHhccccCCcHHHHHHhhhcccc-cccC
Confidence 56889999999999999999999999999999999999999999999999999999975 999999999999999 8876
Q ss_pred ccc
Q 013209 83 FEV 85 (447)
Q Consensus 83 ~~~ 85 (447)
...
T Consensus 82 ~~~ 84 (124)
T KOG0537|consen 82 TAR 84 (124)
T ss_pred CCc
Confidence 543
No 20
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=99.82 E-value=5.8e-19 Score=170.16 Aligned_cols=214 Identities=16% Similarity=0.158 Sum_probs=126.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHh-hhcccCccccccChhHHHHHHHHHhhhcCCcchhhhccccc-cccccccCCCCCCC
Q 013209 133 CESVWAHLGSGMLLGFLWIQSAY-VGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHN-AHHIACNSLDYDPD 210 (447)
Q Consensus 133 ~~~~~~~~l~~~llg~~~~~~~~-l~Hd~~H~~~~~~~~~N~~~g~~~~~~~~g~s~~~wr~~H~-~HH~~tn~~~~DpD 210 (447)
..+++..+.+++.+|+....++. .+||++| |++++|+++|.++.... ++..|+..|+ .||+++++++ |||
T Consensus 66 ~~~~~~~~~~~~~~G~~~g~i~~~~aHel~H----r~~~lnr~lg~~~~~~~---~~~~~~~~H~~~HH~~v~tp~-DP~ 137 (314)
T cd03512 66 DLSALEKVGLILSLGLLSGVIGINTAHELIH----RRSRLERWLGKLLLASL---LYGHFAIEHVRGHHRYVATPE-DPA 137 (314)
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHhccC----CCChHHHHHHHHHHHHh---cccceeeeecccCCCCCCCCC-Ccc
Confidence 55677777788888888776655 8899999 57899999999764322 3445899999 8999999965 999
Q ss_pred CCCCcchheehhhhccccchhcccccCcchhHhHHhhhchhhHHHHhhhhhH--HHHHHHHHHHHhcCCCC-chHHHHHH
Q 013209 211 LQHIPVFAVSTRLFNSITSVFYGRKLDFDPVARFLVSYQHWTFYPVMCVARV--NLYLQTLLLLFSKRKVP-DRALNIMG 287 (447)
Q Consensus 211 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~ 287 (447)
....+ +.. ++ |.+...++.+ .|..+.- .+.++.+.. ...-+.+.
T Consensus 138 tar~g-----e~~------------------------y~---f~~r~~~g~~~~aw~~e~~-rl~~~g~~~~~~~n~~l~ 184 (314)
T cd03512 138 TARRG-----ESF------------------------YR---FLPRALVGSFRSAWKLEKK-RLRRKGRSPWSPRNEVLR 184 (314)
T ss_pred ccccC-----ccH------------------------HH---HHHHHHHHHHHHHHHHHHH-HHHhcCCCCCccchHHHH
Confidence 76311 100 00 1111111111 1221111 111111111 11112233
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhh-hhhhhhccCCCcccccCCCCCCCcHHHHHHhcccCCCCCchhhhhh
Q 013209 288 TLVFWTWFPLLVSYLPNWPERVMFVMASFTVTA-IQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFH 366 (447)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~H~~~~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~l~ 366 (447)
..+.++.+.+++..+++ +..+.+++++.+++. .+-...++||+++.....+ +..+..-+-..|.|.. +...+|++
T Consensus 185 ~~~~~~a~~~~~~~~~g-~~~l~~~l~~~~~g~~~l~~~nY~EHyGL~r~~~~--~gr~e~~~~~hSWNs~-~~~~n~l~ 260 (314)
T cd03512 185 YLALAVALLALAAALGG-LAGLLFLLIQAFYAKSLLELVNYIEHYGLLRKKLA--NGRYEPVGPRHSWNSN-HIVSNLLL 260 (314)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCC--CCccccCCCccCcCcC-cHHHHHHH
Confidence 33333333333333343 344456666666665 4777778899998763221 1111122233444443 56789999
Q ss_pred cccCcccccccCCCCCccchhhhhH
Q 013209 367 GGLQFQLEHHLFPRLPRCQLRKISP 391 (447)
Q Consensus 367 ~glnyHieHHlfP~vP~~~L~~~~~ 391 (447)
.|+++|.+||.+|++|++.|+...+
T Consensus 261 ~nl~rHsdHH~~p~~~y~~L~~~~~ 285 (314)
T cd03512 261 FNLQRHSDHHAHPTRPYQALRPFPE 285 (314)
T ss_pred HhcchhhhhccCCCCchhhccCCcc
Confidence 9999999999999999999997653
No 21
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.80 E-value=1.4e-20 Score=143.61 Aligned_cols=74 Identities=49% Similarity=0.739 Sum_probs=69.3
Q ss_pred CCCHHHHhcccCCCCeEEEEcCEEEEcccccccccccccceecccCCChhHHH-HhcCchhHHHhhhh-ccCCcccc
Q 013209 7 YITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF-IAYHPGTAWQYLDK-LFTGYYVQ 81 (447)
Q Consensus 7 ~~~~~e~~~h~~~~~~~v~i~g~vyd~t~~~~~hpgg~~~i~~~~g~D~t~~f-~~~H~~~~~~~l~~-~~vg~~~~ 81 (447)
+||++||++|++.+++||+|+|+|||||+|+..||||...+..++|+|+|+.| ...|+..+.++|++ |+|| +++
T Consensus 1 ~~t~~el~~h~~~~~~~v~i~g~VYDvt~~~~~hpgg~~~~~~~aG~D~T~~f~~~~h~~~~~~~l~~~~~vG-~ld 76 (76)
T PF00173_consen 1 VYTWEELAKHNKKGDCWVIIDGKVYDVTDFLDRHPGGADILKKYAGRDATDAFEEAFHSWWAEKCLEKYYKVG-YLD 76 (76)
T ss_dssp EEEHHHHTTTEETTEEEEEETTEEEECTTTTTTSTTTSHHHHTTTTSBTHHHHHHHTHHHHHHHHHHGCGEEE-EE-
T ss_pred CCCHHHHhhhCCCCCEEEEECCEEcccccccccccchhHHHHHhccccccHHHhhccCcHHHHHHccCCCEEE-EeC
Confidence 47999999999999999999999999999999999999999999999999999 78999889999999 9999 663
No 22
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion]
Probab=99.79 E-value=4.6e-20 Score=147.26 Aligned_cols=77 Identities=45% Similarity=0.761 Sum_probs=70.9
Q ss_pred CCCCCHHHHhcccCCCCeEEEEcCEEEEcccccccccccccceecccCCChhHHHHhcCchhHH-HhhhhccCCccccC
Q 013209 5 KKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW-QYLDKLFTGYYVQD 82 (447)
Q Consensus 5 ~~~~~~~e~~~h~~~~~~~v~i~g~vyd~t~~~~~hpgg~~~i~~~~g~D~t~~f~~~H~~~~~-~~l~~~~vg~~~~~ 82 (447)
...+|.+||++||+.+|||++|+|+|||||.|++.||||...|+.++|+|+|..|+.+|..-.+ ++|+++.|| .+.+
T Consensus 67 ~i~vt~~El~KH~~~dDcW~~i~G~VYnVt~Yl~fHPgG~d~lmk~aGrD~T~~Fnk~H~WVN~e~LL~~c~VG-vl~d 144 (145)
T KOG0536|consen 67 PIPVTAEELKKHNKKDDCWIAIRGKVYNVTAYLDFHPGGVDELMKHAGRDATKLFNKYHAWVNYEELLKKCFVG-VLVD 144 (145)
T ss_pred CCccCHHHHHhhCCccceEEEEcCEEEecccccccCCCCHHHHHHhcCcchHHHHHHHHHHhcHHHHHhhceee-eecc
Confidence 3478999999999999999999999999999999999999999999999999999999988755 489999999 6643
No 23
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=99.73 E-value=2.9e-18 Score=143.40 Aligned_cols=59 Identities=29% Similarity=0.503 Sum_probs=53.0
Q ss_pred HHHhhhcccCccccccChhHHHHHHHHHhhhcCCcchhhhccccccccccccCCCCCCCC
Q 013209 152 QSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDL 211 (447)
Q Consensus 152 ~~~~l~Hd~~H~~~~~~~~~N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn~~~~DpD~ 211 (447)
....++||++|+++++++++|++++.+++. +.+.|+..|+..|+.||+++|+++.|||.
T Consensus 14 ~~~~~~H~~~H~~~~~~~~~n~~~~~~~~~-~~~~~~~~~~~~H~~HH~~~~~~~~D~~~ 72 (122)
T cd01060 14 GLTVLAHELGHRSFFRSRWLNRLLGALLGL-ALGGSYGWWRRSHRRHHRYTNTPGKDPDS 72 (122)
T ss_pred HHHHHHHHHhhhhhhccccHHHHHHHHHHH-HHcCCHHHHHHHHHHHhcCcCCCCCCCcc
Confidence 445699999999999999999999998776 56999999999999999999998779884
No 24
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=99.64 E-value=2.5e-16 Score=132.76 Aligned_cols=79 Identities=42% Similarity=0.668 Sum_probs=72.1
Q ss_pred ccCCCCCHHHHhcccCCCCeEEEEcCEEEEcccccccccccccceecccCCChhHHHHh-cCchhHHHhhhhccCCcccc
Q 013209 3 AEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIA-YHPGTAWQYLDKLFTGYYVQ 81 (447)
Q Consensus 3 ~~~~~~~~~e~~~h~~~~~~~v~i~g~vyd~t~~~~~hpgg~~~i~~~~g~D~t~~f~~-~H~~~~~~~l~~~~vg~~~~ 81 (447)
+....++.+||.+|++.++|||+|+|+|||+|+|+++||||+.+|+..+|+|+|..|+- .|+..+.++|+.++|| .+.
T Consensus 47 ~~~~~~~~eev~~h~~~~d~~ivi~g~VyDvs~fl~~HPGGe~ii~~~~g~Dat~~f~~~~~~~~~~~llk~~yv~-~v~ 125 (164)
T COG5274 47 ESPKPITAEEVAKHNKSEDCWIVINGKVYDVSQFLDEHPGGEDIIKDTAGKDATKAFNFLHHSHQIGNLLKDVYVD-QVH 125 (164)
T ss_pred CccccccHHHHHHhcCccceEEEEcCEEEEhhhccccCCCcceeehhccCchhhhhhcccccchhHHhhhhceeee-ccc
Confidence 34678999999999999999999999999999999999999999999999999999996 5777788899999999 664
Q ss_pred C
Q 013209 82 D 82 (447)
Q Consensus 82 ~ 82 (447)
.
T Consensus 126 r 126 (164)
T COG5274 126 R 126 (164)
T ss_pred C
Confidence 4
No 25
>PLN02252 nitrate reductase [NADPH]
Probab=99.64 E-value=1.2e-16 Score=172.64 Aligned_cols=80 Identities=36% Similarity=0.576 Sum_probs=75.5
Q ss_pred cCCCCCHHHHhcccCCCCeEEEEcCEEEEcccccccccccccceecccCCChhHHHHhcCchhHHHhhhhccCCccccCc
Q 013209 4 EKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYYVQDF 83 (447)
Q Consensus 4 ~~~~~~~~e~~~h~~~~~~~v~i~g~vyd~t~~~~~hpgg~~~i~~~~g~D~t~~f~~~H~~~~~~~l~~~~vg~~~~~~ 83 (447)
..+.||++|+++|++.++|||+|+|+|||+|+|++.||||...|..++|+|+|++|+++|+..|+++|++|+|| ++++.
T Consensus 516 ~~~~~t~~ev~~h~~~~~~Wivi~g~VYDvT~fl~~HPGG~~~I~~~aG~DaT~~F~~~Hs~~a~~~L~~~~IG-~l~~~ 594 (888)
T PLN02252 516 GSKQYTMSEVRKHNSEDSCWIVVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFDAIHSDKAKKMLEDYRIG-ELVTT 594 (888)
T ss_pred ccceeCHHHHHhhCcCCCeEEEECCEEEeCHHHHHHCCChHHHHHhhcCCCcHHHHhhhhhHHHHHHHHhCcCC-ccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999 88654
Q ss_pred c
Q 013209 84 E 84 (447)
Q Consensus 84 ~ 84 (447)
.
T Consensus 595 ~ 595 (888)
T PLN02252 595 G 595 (888)
T ss_pred c
Confidence 4
No 26
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion]
Probab=99.35 E-value=6.3e-13 Score=106.44 Aligned_cols=82 Identities=30% Similarity=0.481 Sum_probs=66.6
Q ss_pred ccCCCCCHHHHhcccCC-CCeEEEEcCEEEEcccccccccccccceecccCC--ChhHHHHhcCchh-HHHhhhhccCCc
Q 013209 3 AEKKYITAEELRTHNKA-EDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQ--DVTDAFIAYHPGT-AWQYLDKLFTGY 78 (447)
Q Consensus 3 ~~~~~~~~~e~~~h~~~-~~~~v~i~g~vyd~t~~~~~hpgg~~~i~~~~g~--D~t~~f~~~H~~~-~~~~l~~~~vg~ 78 (447)
+..++|+.+||++|+++ ++.||.+...|||||+|++.||||.+ |+..+|. |.-.+..+.|... +.++|+.|+||
T Consensus 77 E~l~iY~~EEV~~H~s~e~rIWVTyg~gVyDVTdFv~~HPGGdK-illAAG~a~dPFWalY~qHnt~eVlElLegyrIG- 154 (167)
T KOG4576|consen 77 ESLHIYTKEEVSSHTSPETRIWVTYGSGVYDVTDFVDLHPGGDK-ILLAAGGALDPFWALYAQHNTSEVLELLEGYRIG- 154 (167)
T ss_pred hhccchhHHHHHhcCCCccceEEEecCcceeHHHHHHhCCCcce-eeeecCCCcCcHHHHHHHhhHHHHHHHHhhcccc-
Confidence 34589999999999876 47999999999999999999999977 5566664 5555555667664 88999999999
Q ss_pred cccCccch
Q 013209 79 YVQDFEVS 86 (447)
Q Consensus 79 ~~~~~~~~ 86 (447)
+++.++..
T Consensus 155 ~L~~~dv~ 162 (167)
T KOG4576|consen 155 ELNPEDVV 162 (167)
T ss_pred cCChhhcc
Confidence 89876544
No 27
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=98.74 E-value=9.1e-08 Score=87.26 Aligned_cols=50 Identities=22% Similarity=0.273 Sum_probs=39.6
Q ss_pred ccc-CccccccChhHHHHHHHHHhhhcCCcchhhhccccccccccccCCCCCC
Q 013209 158 HDS-GHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDP 209 (447)
Q Consensus 158 Hd~-~H~~~~~~~~~N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn~~~~Dp 209 (447)
|-| +|+++.-.+++..++.. ++.+..+.|..+|-..|..||++|.+ +.||
T Consensus 67 HRl~sHRa~~~~k~Le~~la~-~g~l~~~G~~~~W~~~HR~HHr~tDT-d~DP 117 (289)
T COG1398 67 HRLWSHRAFKAHKWLEYVLAF-WGALTTQGPAIEWVGIHRKHHRKTDT-DQDP 117 (289)
T ss_pred hhhhhhhhcccchHHHHHHHH-HHHhhcCCCceeHHHHHHHhhcccCC-CCCC
Confidence 664 78988888888887765 55555677888999999999999966 4477
No 28
>PLN02220 delta-9 acyl-lipid desaturase
Probab=98.67 E-value=9.4e-07 Score=84.15 Aligned_cols=54 Identities=19% Similarity=0.052 Sum_probs=40.4
Q ss_pred cc-cCccccccChhHHHHHHHHHhhhcCCcchhhhccccccccccccCCCCCCCCCC
Q 013209 158 HD-SGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQH 213 (447)
Q Consensus 158 Hd-~~H~~~~~~~~~N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn~~~~DpD~~~ 213 (447)
|- .+|+++..++++..++..+ +.+..--|.-+|-..|..||+++.+++ ||--..
T Consensus 77 HRl~sHrsfka~~~l~~~la~~-g~~a~Qgs~~~Wv~~HR~HH~~sDt~~-DPHsp~ 131 (299)
T PLN02220 77 HRNLAHRSFKLPKWLEYPFAYS-ALFALQGDPIDWVSTHRFHHQFTDSDR-DPHSPI 131 (299)
T ss_pred HHHHHhhcCcCcHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHhcCCCC-Cccccc
Confidence 54 5899998889998887764 444434456679999999999998865 876443
No 29
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=98.66 E-value=3.7e-07 Score=85.27 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=42.1
Q ss_pred cc-cCccccccChhHHHHHHHHHhhhcCCcchhhhccccccccccccCCCCCCCCCCCcc
Q 013209 158 HD-SGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPV 216 (447)
Q Consensus 158 Hd-~~H~~~~~~~~~N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn~~~~DpD~~~~p~ 216 (447)
|- -+|.++.-++++.-++......-++|-++ .|-..|..||++|.+. +||--....|
T Consensus 88 HRlwsHRSyKa~kpLr~fla~~~~~A~Qg~~~-~WvrdHR~HHk~tdTD-~DPhn~~rGF 145 (321)
T KOG1600|consen 88 HRLWSHRSYKAPKPLRYFLAYCNTLAFQGDII-DWVRDHRVHHKFTDTD-ADPHNPRRGF 145 (321)
T ss_pred hhhcccccccCCccHHHHHHHHHHHhccCChh-HHHhhhhhhccccccC-CCCCCcccch
Confidence 54 68999888888888887643334567665 5899999999999994 4887655443
No 30
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=98.62 E-value=7.9e-08 Score=68.13 Aligned_cols=75 Identities=28% Similarity=0.389 Sum_probs=54.3
Q ss_pred CCCCCHHHHhcccCC-CCeEEEEcCEEEEcccccccccccccceecccCCChhHHHHhcCchhHHHhhhhc-cCCccccC
Q 013209 5 KKYITAEELRTHNKA-EDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKL-FTGYYVQD 82 (447)
Q Consensus 5 ~~~~~~~e~~~h~~~-~~~~v~i~g~vyd~t~~~~~hpgg~~~i~~~~g~D~t~~f~~~H~~~~~~~l~~~-~vg~~~~~ 82 (447)
.+.||.+|+.+.|+. ++.+|.++|.||||+.- ...-+|...=..-+|+|.|+.|++-|+. -.++|+.| .|| .+.+
T Consensus 1 mrefTLEELs~ynG~nGpaYiA~~G~VYDvS~s-~~W~dGtHqglhsaG~DLs~~~~~~aph-g~eil~~~PvVG-~L~k 77 (81)
T COG4892 1 MREFTLEELSKYNGENGPAYIAVNGTVYDVSLS-PSWGDGTHQGLHSAGKDLSSEFNSCAPH-GMEILTSLPVVG-ALIK 77 (81)
T ss_pred CceecHHHHHhhcCCCCCeEEEECCEEEeeccC-cccCCCccccccccchhHHHHHhhcCCc-hhHHHhcCchhh-eeec
Confidence 368999999999876 57999999999999763 2445555544556899999999975433 23455555 456 5544
No 31
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=98.09 E-value=4e-05 Score=67.42 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=39.9
Q ss_pred cCccccccChhHHHHHHHHHhhhcCCcchhhhccccccccccccCCCCCCCC
Q 013209 160 SGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDL 211 (447)
Q Consensus 160 ~~H~~~~~~~~~N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn~~~~DpD~ 211 (447)
.+|+++..++++..++..+ +.+....|..+|...|..||+++.+++ ||--
T Consensus 27 ~aHrsfk~~~~l~~~l~~~-g~~a~qgs~~~W~~~HR~HH~~sDt~~-DPhs 76 (178)
T cd03505 27 WAHRSFKAPKPLRIFLAIL-GSLAGQGSPLWWVADHRLHHRYSDTDG-DPHS 76 (178)
T ss_pred HhhccCcCcHHHHHHHHHH-HHHHcCcCHHHHHHHHHHhhcccCCCC-CCCC
Confidence 4899999999999888774 444545677789999999999999865 7653
No 32
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=97.68 E-value=5.8e-05 Score=64.88 Aligned_cols=55 Identities=35% Similarity=0.560 Sum_probs=45.1
Q ss_pred cCCCCCHHHHhcccCCC---CeEEEEcCEEEEcccccc-cccccccceecccCCChhHHHH
Q 013209 4 EKKYITAEELRTHNKAE---DLWISIQGKVYDVTEWAK-QHPGGDVPLLNLAGQDVTDAFI 60 (447)
Q Consensus 4 ~~~~~~~~e~~~h~~~~---~~~v~i~g~vyd~t~~~~-~hpgg~~~i~~~~g~D~t~~f~ 60 (447)
..+.||.+||++.++.+ +.++.|+|+|||||.=.. .-|||. -..+||+|||....
T Consensus 54 ~~~dfT~eEL~~ydGs~~d~~Il~AI~G~VYDVT~Gr~FYGp~Gp--Y~~fAG~DASR~La 112 (183)
T KOG1110|consen 54 KVRDFTVEELRQYDGSDPDKPILLAINGKVYDVTRGREFYGPGGP--YSLFAGKDASRGLA 112 (183)
T ss_pred cccccCHHHHHhcCCCCCCCceEEEecceEEEecCCccccCCCCC--chhhcccchHHHHH
Confidence 34579999999998754 689999999999986543 469998 57799999998865
No 33
>KOG1108 consensus Predicted heme/steroid binding protein [General function prediction only]
Probab=96.55 E-value=0.0022 Score=57.12 Aligned_cols=53 Identities=36% Similarity=0.626 Sum_probs=44.3
Q ss_pred CCCCHHHHhcccCCC---CeEEEEcCEEEEcccccccc--cccccceecccCCChhHHHHh
Q 013209 6 KYITAEELRTHNKAE---DLWISIQGKVYDVTEWAKQH--PGGDVPLLNLAGQDVTDAFIA 61 (447)
Q Consensus 6 ~~~~~~e~~~h~~~~---~~~v~i~g~vyd~t~~~~~h--pgg~~~i~~~~g~D~t~~f~~ 61 (447)
..||++|++..|+.+ +.++.|-|.||||+.= ++| ||+. -..++|||||.+|-+
T Consensus 60 ~lFtpeeLa~fnGt~e~~piyLaiLGsVfdVs~g-k~hYgsG~s--YnhFaGRDASrAFvs 117 (281)
T KOG1108|consen 60 ILFTPEELAKFNGTEEGRPIYLAILGSVFDVSRG-KKHYGSGCS--YNHFAGRDASRAFVS 117 (281)
T ss_pred eeeCHHHHhhccCCCCCCceeeeeeceeeeccCC-eeeeCCCCC--cccccccccchheec
Confidence 479999999998764 5899999999999875 455 5555 688999999999874
No 34
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=84.94 E-value=0.5 Score=36.63 Aligned_cols=16 Identities=56% Similarity=1.215 Sum_probs=13.3
Q ss_pred EEEEcCEEEEcccccc
Q 013209 23 WISIQGKVYDVTEWAK 38 (447)
Q Consensus 23 ~v~i~g~vyd~t~~~~ 38 (447)
++-.+|+|||+|+|+.
T Consensus 58 y~c~~g~VyDiTeWA~ 73 (94)
T PF14901_consen 58 YACMDGKVYDITEWAT 73 (94)
T ss_pred EEEcCceEEehhhhhh
Confidence 3478999999999963
No 35
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=72.99 E-value=57 Score=31.71 Aligned_cols=13 Identities=23% Similarity=0.232 Sum_probs=10.5
Q ss_pred cccccccccccCC
Q 013209 193 WTHNAHHIACNSL 205 (447)
Q Consensus 193 ~~H~~HH~~tn~~ 205 (447)
..|..||.++..+
T Consensus 264 ~rHsdHH~~p~~~ 276 (314)
T cd03512 264 QRHSDHHAHPTRP 276 (314)
T ss_pred chhhhhccCCCCc
Confidence 3788999998864
No 36
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=62.88 E-value=62 Score=31.04 Aligned_cols=61 Identities=13% Similarity=-0.080 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHh-hhcccCccccccChh--HHHHHHHHHhhhcCCcchhhhccccccccccccCCC
Q 013209 136 VWAHLGSGMLLGFLWIQSAY-VGHDSGHYQVMTSPK--FNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLD 206 (447)
Q Consensus 136 ~~~~~l~~~llg~~~~~~~~-l~Hd~~H~~~~~~~~--~N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn~~~ 206 (447)
+|..++....+|.....+-. ..|......-.++.. .+.++..++. ....|..||.++..|-
T Consensus 180 ~~~~~l~~~~la~~~~~~~~~~Eh~~~~~~~~rs~~~~~~~~~~~l~~----------ninyH~~HH~~P~vP~ 243 (288)
T cd03509 180 WWAYLLAVYYPALSLAKIRTFLEHRAHERPRGRTVINEAGGPLRLLFL----------NNNLHVVHHDLPTLPW 243 (288)
T ss_pred HHHHHHHHHHHHHHHHhhchHhhccCCCCccCCceeeeCcHHHHHHHh----------cCCchHhhcCCCCCCc
Confidence 33333333444554444433 668877554433322 1333322211 3458999999988755
No 37
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=53.34 E-value=57 Score=29.88 Aligned_cols=19 Identities=42% Similarity=0.566 Sum_probs=12.4
Q ss_pred chhhHHHHHHHHHHHHHHH
Q 013209 133 CESVWAHLGSGMLLGFLWI 151 (447)
Q Consensus 133 ~~~~~~~~l~~~llg~~~~ 151 (447)
..+||..++.++++|+...
T Consensus 49 ~~~~~~~~i~gi~~g~l~a 67 (224)
T PF13829_consen 49 FGSWWYWLIIGILLGLLAA 67 (224)
T ss_pred HccHHHHHHHHHHHHHHHH
Confidence 3466666777777777654
No 38
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=49.49 E-value=7.1 Score=39.20 Aligned_cols=16 Identities=56% Similarity=1.213 Sum_probs=13.8
Q ss_pred eEEEEcCEEEEccccc
Q 013209 22 LWISIQGKVYDVTEWA 37 (447)
Q Consensus 22 ~~v~i~g~vyd~t~~~ 37 (447)
.++.-||||||+|+|+
T Consensus 379 yy~c~DgkVYDITeWA 394 (490)
T KOG0720|consen 379 YYACMDGKVYDITEWA 394 (490)
T ss_pred eeeecCCceEeehhhh
Confidence 4567899999999995
No 39
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=41.69 E-value=42 Score=30.47 Aligned_cols=14 Identities=21% Similarity=0.052 Sum_probs=10.8
Q ss_pred ccccccccccccCC
Q 013209 192 KWTHNAHHIACNSL 205 (447)
Q Consensus 192 r~~H~~HH~~tn~~ 205 (447)
-..|+.||.++..+
T Consensus 218 ~~~H~~HHl~P~vp 231 (257)
T PF00487_consen 218 LNYHIEHHLFPGVP 231 (257)
T ss_pred CCChHHhCCCCCcC
Confidence 34799999998664
No 40
>PLN02601 beta-carotene hydroxylase
Probab=41.67 E-value=69 Score=30.10 Aligned_cols=60 Identities=22% Similarity=0.174 Sum_probs=29.3
Q ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHh-hhcc-cCcccc
Q 013209 102 QGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAY-VGHD-SGHYQV 165 (447)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llg~~~~~~~~-l~Hd-~~H~~~ 165 (447)
.|-|+.|..+.+.-.+..++++..+ ... .++++.+...+-+|+....+.+ +.|| ..|.-+
T Consensus 175 ~g~FE~NDlFaVifAvpAIaL~~~G---~~~-~g~~p~~~fgiGlGITlYGiaYffVHDgLVHqRf 236 (303)
T PLN02601 175 EGAFELNDVFAIVNAVPAIGLLYYG---FFN-KGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRF 236 (303)
T ss_pred CCCcccccchhhhhHHHHHHHHHHh---hcc-ccccHHHHHHHHHhHHHHHHHHHHHhhhhhcccc
Confidence 4667777776554333333333322 221 2222212223445665555554 8899 567654
No 41
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=40.01 E-value=63 Score=31.88 Aligned_cols=15 Identities=20% Similarity=-0.013 Sum_probs=11.9
Q ss_pred ccccccccccccCCC
Q 013209 192 KWTHNAHHIACNSLD 206 (447)
Q Consensus 192 r~~H~~HH~~tn~~~ 206 (447)
...|..||.+++.+-
T Consensus 268 ~nyH~~HHl~P~vP~ 282 (343)
T COG3239 268 INYHVEHHLFPDVPW 282 (343)
T ss_pred ccccHhhhCCCCCch
Confidence 457889999988854
No 42
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=36.41 E-value=26 Score=32.28 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=14.2
Q ss_pred CcccccccCCCCCccchhhhh
Q 013209 370 QFQLEHHLFPRLPRCQLRKIS 390 (447)
Q Consensus 370 nyHieHHlfP~vP~~~L~~~~ 390 (447)
+.|.+||.+|+.+ +=|+..
T Consensus 87 ~~H~~HH~~~~~~--~DpD~~ 105 (225)
T cd03513 87 RKHHLHHRHPGTA--KDPDFH 105 (225)
T ss_pred HHHHHHcCCCCCC--CCCCCC
Confidence 5789999999987 444443
No 43
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=35.50 E-value=89 Score=27.63 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=23.6
Q ss_pred hhcccCccccccChhHHHHHHHHHhhhcCCcchhhhcccccccccccc
Q 013209 156 VGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACN 203 (447)
Q Consensus 156 l~Hd~~H~~~~~~~~~N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn 203 (447)
-.|--+|...++.+ +=.++.. .+ ++ .| |..|..||+-+-
T Consensus 100 q~HkWsH~~~~~P~-~V~~LQ~-~g-il--ls----r~~H~~HH~aPh 138 (178)
T PF10520_consen 100 QFHKWSHTYKSLPP-WVRFLQD-AG-IL--LS----RKHHRIHHVAPH 138 (178)
T ss_pred HHHHHHcCCCCCCH-HHHHHHH-CC-cc--cC----chhhhccccCcc
Confidence 45888898766444 4444444 23 22 23 678889998743
No 44
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=34.90 E-value=1.8e+02 Score=27.54 Aligned_cols=14 Identities=21% Similarity=0.028 Sum_probs=11.4
Q ss_pred cccccccccccCCC
Q 013209 193 WTHNAHHIACNSLD 206 (447)
Q Consensus 193 ~~H~~HH~~tn~~~ 206 (447)
..|..||.++..|-
T Consensus 246 nyH~eHHl~P~vP~ 259 (285)
T cd03511 246 PYHAEHHMYPSVPF 259 (285)
T ss_pred chHHHHhcCCCCcH
Confidence 48999999988754
No 45
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=34.82 E-value=54 Score=30.88 Aligned_cols=15 Identities=40% Similarity=0.301 Sum_probs=12.2
Q ss_pred ccccccccccccCCC
Q 013209 192 KWTHNAHHIACNSLD 206 (447)
Q Consensus 192 r~~H~~HH~~tn~~~ 206 (447)
..-||-||+|+|+..
T Consensus 236 EgwHNnHHafp~~ar 250 (289)
T COG1398 236 EGWHNNHHAFPNSAR 250 (289)
T ss_pred cccccccccCcchhh
Confidence 346999999999854
No 46
>PLN02434 fatty acid hydroxylase
Probab=31.60 E-value=1.9e+02 Score=26.94 Aligned_cols=11 Identities=27% Similarity=0.301 Sum_probs=8.4
Q ss_pred ccccccccccC
Q 013209 194 THNAHHIACNS 204 (447)
Q Consensus 194 ~H~~HH~~tn~ 204 (447)
.|-.||.++++
T Consensus 122 lHg~HH~~P~D 132 (237)
T PLN02434 122 LHGCHHKHPMD 132 (237)
T ss_pred HHHHhhcCCCC
Confidence 48899987665
No 47
>PLN02505 omega-6 fatty acid desaturase
Probab=30.28 E-value=1.3e+02 Score=30.10 Aligned_cols=32 Identities=9% Similarity=0.192 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhcccCccccccChhHHHHHHHH
Q 013209 147 GFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLI 178 (447)
Q Consensus 147 g~~~~~~~~l~Hd~~H~~~~~~~~~N~~~g~~ 178 (447)
+.......+++|-.---...+...||..-|.+
T Consensus 263 ~~wlv~itylqHt~~~ip~~~~~~W~~~rgAl 294 (381)
T PLN02505 263 NAFLVLITYLQHTHPALPHYDSSEWDWLRGAL 294 (381)
T ss_pred HHHHHHHHHHhccCCCCCccCCCCcChhhccc
Confidence 33334445599987777777888888877654
No 48
>PLN02598 omega-6 fatty acid desaturase
Probab=28.77 E-value=2.5e+02 Score=28.65 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=26.3
Q ss_pred HHhhhcccCccccccChhHHHHHHHHHhhhcCCcc-----hhhhccccccccccccCCC
Q 013209 153 SAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGIS-----IAWWKWTHNAHHIACNSLD 206 (447)
Q Consensus 153 ~~~l~Hd~~H~~~~~~~~~N~~~g~~~~~~~~g~s-----~~~wr~~H~~HH~~tn~~~ 206 (447)
...+.|-.-+-....+..||..-|.+..+.-...+ ...--..|..||.++..+-
T Consensus 294 it~lhHt~p~ip~~~~~eW~~~~~al~~Tv~~~~~~~~~~L~hnIn~HV~HHLfP~IP~ 352 (421)
T PLN02598 294 FTMVHHTAPHIPFKQAREWNAAQAQLNGTVHCDYPAWIEFLCHDISVHIPHHISSKIPS 352 (421)
T ss_pred HHHHhhcCCCCCccccccccHhhhhhcCceecCCcHHHHHHHcCCccchhhhcCCCCCc
Confidence 33477766555555555566554443322111111 0111246778888776644
No 49
>PLN02220 delta-9 acyl-lipid desaturase
Probab=27.05 E-value=3.2e+02 Score=26.36 Aligned_cols=41 Identities=22% Similarity=0.058 Sum_probs=23.2
Q ss_pred hhcccCccccc-cC-hhHHHHHHHHHhhhcCCcchhhhccccccccccccCCC
Q 013209 156 VGHDSGHYQVM-TS-PKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLD 206 (447)
Q Consensus 156 l~Hd~~H~~~~-~~-~~~N~~~g~~~~~~~~g~s~~~wr~~H~~HH~~tn~~~ 206 (447)
++|-.|-...- ++ ++=|.+++.+ ..|- --||-||+++.+..
T Consensus 215 ~~H~~G~rpy~~~d~srN~~~lall----t~GE------gwHNnHHafP~sar 257 (299)
T PLN02220 215 ACHIWGSRTWKTKDTSRNVWWLSLF----TMGE------SWHNNHHAFESSAR 257 (299)
T ss_pred hhhcccCCCCCCCCCcchhHHHHHH----hccc------cccccccCCccchh
Confidence 67877766653 22 2224444432 2242 26999999987543
No 50
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=26.65 E-value=3e+02 Score=24.22 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Q 013209 117 TCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWI 151 (447)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~llg~~~~ 151 (447)
++..++..+++... ..++ |.-+++++++|....
T Consensus 107 ~l~~~l~~~~fa~l-fgg~-~~~~~~a~i~g~~~~ 139 (193)
T PF06738_consen 107 ILAAGLASAAFALL-FGGS-WIDMIVAFILGLLVG 139 (193)
T ss_pred HHHHHHHHHHHHHH-HCCC-HHHHHHHHHHHHHHH
Confidence 33333334444333 4444 444555666666544
No 51
>smart00099 btg1 tob/btg1 family. The tob/btg1 is a family of proteins that inhibit cell proliferation.
Probab=25.74 E-value=49 Score=26.61 Aligned_cols=42 Identities=21% Similarity=0.465 Sum_probs=33.3
Q ss_pred hhhcccCcccccccCCCCCcc---------chhhhhHHHHHHHHHcCCCccc
Q 013209 364 WFHGGLQFQLEHHLFPRLPRC---------QLRKISPVVRDLCKKHNMPYRS 406 (447)
Q Consensus 364 ~l~~glnyHieHHlfP~vP~~---------~L~~~~~~v~~~~~~~g~~Y~~ 406 (447)
-|...|.-|..||-||.-|.. | .+..|++.+.|++-|+.|.+
T Consensus 33 ~L~~~L~~~y~~HWyP~~P~kGqayRCIrIn-~~~Dp~l~~Aa~~sGl~~~~ 83 (108)
T smart00099 33 KLTRLLKEKYKNHWYPEKPYKGSGFRCIRIN-QKVDPVIEQACKESGLDIDD 83 (108)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCcceEEEEEC-CcCCHHHHHHHHHhCCCHHH
Confidence 334445567789999998865 4 68889999999999999875
No 52
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=25.37 E-value=44 Score=27.86 Aligned_cols=13 Identities=46% Similarity=0.613 Sum_probs=11.3
Q ss_pred eEEEEcCEEEEcc
Q 013209 22 LWISIQGKVYDVT 34 (447)
Q Consensus 22 ~~v~i~g~vyd~t 34 (447)
.-|.|||++|||+
T Consensus 5 ~~itvng~~y~V~ 17 (130)
T PRK06549 5 FKITIDGKEYLVE 17 (130)
T ss_pred EEEEECCEEEEEE
Confidence 5689999999995
No 53
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=24.40 E-value=3.4e+02 Score=21.06 Aligned_cols=40 Identities=8% Similarity=0.050 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCccccccChhHHHHHH
Q 013209 137 WAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQ 176 (447)
Q Consensus 137 ~~~~l~~~llg~~~~~~~~l~Hd~~H~~~~~~~~~N~~~g 176 (447)
+...+++.++|...+..+=..-|..-=+.++++...-+.+
T Consensus 44 ~~~~l~~~~~g~~~q~~GH~~~E~~~Pa~~~~p~~sl~~~ 83 (95)
T PF06127_consen 44 WWLALAVFVVGWGLQFIGHFFFEKNKPAFFDNPLQSLLID 83 (95)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHcCCCcchhchHHHHHHH
Confidence 3445566667766554332223444444555555444443
No 54
>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors. ; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.
Probab=22.74 E-value=57 Score=22.85 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=20.3
Q ss_pred CeEEEEcCEEEEcccccccccccccc
Q 013209 21 DLWISIQGKVYDVTEWAKQHPGGDVP 46 (447)
Q Consensus 21 ~~~v~i~g~vyd~t~~~~~hpgg~~~ 46 (447)
+..|.++|+.|=|.++....||....
T Consensus 8 G~~i~~~g~~~~V~~~~~~k~gkg~a 33 (58)
T PF08207_consen 8 GMVIEIDGEPYVVLDFQHVKPGKGGA 33 (58)
T ss_dssp TSEEEETTEEEEEEEEEEECCTTSSS
T ss_pred CCEEEECCEEEEEEEEEEECCCCCCe
Confidence 56788999999999997666775443
No 55
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=22.66 E-value=3.3e+02 Score=28.63 Aligned_cols=14 Identities=14% Similarity=0.014 Sum_probs=11.2
Q ss_pred cccccccccccCCC
Q 013209 193 WTHNAHHIACNSLD 206 (447)
Q Consensus 193 ~~H~~HH~~tn~~~ 206 (447)
..|.+||-+++.+.
T Consensus 461 N~QiEHHLFP~iP~ 474 (526)
T PLN03198 461 NRQIEHHLFPTMPR 474 (526)
T ss_pred cccchhhcCCCCch
Confidence 46779999988765
No 56
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.03 E-value=61 Score=28.00 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=17.1
Q ss_pred hhh-hHHHHHHHHHcCCCccccc
Q 013209 387 RKI-SPVVRDLCKKHNMPYRSLS 408 (447)
Q Consensus 387 ~~~-~~~v~~~~~~~g~~Y~~~~ 408 (447)
+.+ ....+++|+++|+||-+.|
T Consensus 140 R~Vs~~qa~~La~kyglPYfETS 162 (219)
T KOG0081|consen 140 RVVSEDQAAALADKYGLPYFETS 162 (219)
T ss_pred hhhhHHHHHHHHHHhCCCeeeec
Confidence 344 3567889999999999864
No 57
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=21.65 E-value=5.1 Score=32.81 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=20.2
Q ss_pred EEEcccccccccccccceecccCCCh
Q 013209 30 VYDVTEWAKQHPGGDVPLLNLAGQDV 55 (447)
Q Consensus 30 vyd~t~~~~~hpgg~~~i~~~~g~D~ 55 (447)
-+|+.+|++.||.|..++....+++.
T Consensus 65 c~Dig~~vr~~p~gr~ii~~lg~K~~ 90 (119)
T PF11698_consen 65 CHDIGEFVRHYPNGRNIIEKLGAKER 90 (119)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHSHHHH
T ss_pred hcchHHHHHHChhHHHHHHhcChHHH
Confidence 47999999999999988877666653
No 58
>PLN02579 sphingolipid delta-4 desaturase
Probab=21.62 E-value=2e+02 Score=28.09 Aligned_cols=14 Identities=29% Similarity=0.074 Sum_probs=11.8
Q ss_pred cccccccccccCCC
Q 013209 193 WTHNAHHIACNSLD 206 (447)
Q Consensus 193 ~~H~~HH~~tn~~~ 206 (447)
..|+.||.+++.|.
T Consensus 259 gYH~eHH~fP~IP~ 272 (323)
T PLN02579 259 GYHNEHHDFPRIPG 272 (323)
T ss_pred cccHhhcCCCCCch
Confidence 37999999988866
No 59
>PF12105 SpoU_methylas_C: SpoU, rRNA methylase, C-terminal; InterPro: IPR022724 This domain is found in bacteria and is about 60 amino acids in length. It is found in association with PF00588 from PFAM. This domain has a conserved LFE sequence motif. Some members of the Pfam family SpoU_methylase, PF00588 from PFAM, carry this very distinctive sequence at their extreme C terminus. The exact function of this domain is not known. ; GO: 0009020 tRNA (guanosine-2'-O-)-methyltransferase activity; PDB: 1ZJR_A.
Probab=21.56 E-value=42 Score=23.56 Aligned_cols=19 Identities=32% Similarity=0.793 Sum_probs=3.7
Q ss_pred hhHHHHHHHHHcCCCcccc
Q 013209 389 ISPVVRDLCKKHNMPYRSL 407 (447)
Q Consensus 389 ~~~~v~~~~~~~g~~Y~~~ 407 (447)
.+|.+.+.|++.|++|-.-
T Consensus 27 ~yP~lA~~cr~kg~pYP~L 45 (57)
T PF12105_consen 27 GYPVLAKWCRRKGLPYPPL 45 (57)
T ss_dssp HHHHH--------------
T ss_pred cCHHHHhhccccccccccc
Confidence 3788999999999999854
No 60
>TIGR02269 Myxococcus xanthus paralogous lipoprotein family TIGR02269. This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N-terminus; the others are predicted lipoproteins. The function is unknown.
Probab=20.89 E-value=66 Score=28.45 Aligned_cols=27 Identities=22% Similarity=0.634 Sum_probs=19.0
Q ss_pred cccccCCCCCccchhhhhHHHHHHHHHcCCCccccc
Q 013209 373 LEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLS 408 (447)
Q Consensus 373 ieHHlfP~vP~~~L~~~~~~v~~~~~~~g~~Y~~~~ 408 (447)
+.||+||+-| ++ ....+..|++.+.++
T Consensus 125 ~kHHiFPQa~-----~L----A~wF~~~Gv~iHd~T 151 (211)
T TIGR02269 125 VRHHLFPQAP-----EL----AKWFARRGVKIHDFT 151 (211)
T ss_pred eeeccCCCCH-----HH----HHHHHHcCCChhhee
Confidence 6799999875 33 345566788877664
No 61
>PHA01623 hypothetical protein
Probab=20.25 E-value=1.6e+02 Score=20.53 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=21.3
Q ss_pred hhhhHHHHHHHHHcCCCcccccHHHHHHHHH
Q 013209 387 RKISPVVRDLCKKHNMPYRSLSFFEANVWTI 417 (447)
Q Consensus 387 ~~~~~~v~~~~~~~g~~Y~~~~~~~~~~~~~ 417 (447)
.++...+..+|+++|+. ...-+.+|+...+
T Consensus 22 eel~~~Ld~y~~~~g~~-rSe~IreAI~~yL 51 (56)
T PHA01623 22 KDLKTRLKVYCAKNNLQ-LTQAIEEAIKEYL 51 (56)
T ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHH
Confidence 46788999999999997 4334455555544
No 62
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=20.01 E-value=86 Score=29.60 Aligned_cols=51 Identities=14% Similarity=0.213 Sum_probs=31.1
Q ss_pred cccCCC-CCccchhhhhHHHHHHHHHcCCCcccccHHH-------------HHHHHHHHHHHHHH
Q 013209 375 HHLFPR-LPRCQLRKISPVVRDLCKKHNMPYRSLSFFE-------------ANVWTIRTLRGAAL 425 (447)
Q Consensus 375 HHlfP~-vP~~~L~~~~~~v~~~~~~~g~~Y~~~~~~~-------------~~~~~~~~l~~~~~ 425 (447)
|=-||+ |..-.+.+-..++++.|++.|++|.+.+-.+ .+.++-+.++++|+
T Consensus 136 h~sfprhms~~~l~~Rr~~M~~~C~~lGi~fv~~taPDP~sd~gv~gaqqfIlE~vp~~i~kYGk 200 (275)
T PF12683_consen 136 HYSFPRHMSYELLARRRDIMEEACKDLGIKFVEVTAPDPTSDVGVAGAQQFILEDVPKWIKKYGK 200 (275)
T ss_dssp EEEETTGGGSHHHHHHHHHHHHHHHHCT--EEEEEE---SSTCHHHHHHHHHHHHHHHHHHHH-S
T ss_pred EEechhhcchHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 444776 4445566667889999999999998852222 23456666666666
Done!