Query 013209
Match_columns 447
No_of_seqs 257 out of 2307
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 06:15:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013209.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013209hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cyoa_ d.120.1.1 (A:) Cytochr 99.9 7.2E-27 5.2E-31 178.6 5.0 85 3-88 2-87 (88)
2 d1euea_ d.120.1.1 (A:) Cytochr 99.9 1E-26 7.5E-31 176.9 5.1 83 2-85 1-84 (86)
3 d1cxya_ d.120.1.1 (A:) Cytochr 99.9 4.9E-26 3.6E-30 171.4 6.3 76 4-80 1-81 (81)
4 d1kbia2 d.120.1.1 (A:1-97) Fla 99.9 1.2E-24 8.6E-29 169.0 4.8 83 2-85 5-89 (97)
5 d1soxa2 d.120.1.1 (A:3-93) Sul 99.9 2.3E-24 1.7E-28 165.9 5.1 81 4-85 1-85 (91)
6 d1mj4a_ d.120.1.1 (A:) Sulfite 99.9 1E-23 7.3E-28 158.4 3.7 75 5-80 2-80 (80)
7 d1t0ga_ d.120.1.2 (A:) Putativ 98.5 2.2E-08 1.6E-12 77.1 3.6 57 3-61 7-67 (109)
8 d2eifa1 b.34.5.2 (A:1-73) Euka 24.1 9.1 0.00066 25.6 0.4 22 21-42 18-39 (73)
9 d1bkba1 b.34.5.2 (A:4-74) Euka 23.7 12 0.00088 24.8 1.0 23 21-43 17-39 (71)
10 d1jeqa1 a.140.2.1 (A:559-609) 15.9 69 0.005 19.3 3.3 27 390-416 20-48 (51)
No 1
>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.93 E-value=7.2e-27 Score=178.62 Aligned_cols=85 Identities=33% Similarity=0.567 Sum_probs=78.9
Q ss_pred ccCCCCCHHHHhcccCCCCeEEEEcCEEEEcccccccccccccceecccCCChhHHHHhc-CchhHHHhhhhccCCcccc
Q 013209 3 AEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAY-HPGTAWQYLDKLFTGYYVQ 81 (447)
Q Consensus 3 ~~~~~~~~~e~~~h~~~~~~~v~i~g~vyd~t~~~~~hpgg~~~i~~~~g~D~t~~f~~~-H~~~~~~~l~~~~vg~~~~ 81 (447)
+..+.||++||++|++.++|||+|+|+|||||+|++.||||.++|..++|+|+|+.|+++ |+..++++|++|+|| ++.
T Consensus 2 ~~~k~yt~~Ev~~H~~~~d~Wvii~g~VYDvT~f~~~HPGG~~~i~~~aG~D~T~~F~~~~hs~~a~~~l~~~~IG-~l~ 80 (88)
T d1cyoa_ 2 KAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIG-ELH 80 (88)
T ss_dssp CSCCEECHHHHTTCEETTEEEEEETTEEEECTTTTTTCTTCSHHHHHHTTSBCHHHHHHTTCCHHHHHHHTTTEEE-EEC
T ss_pred CccccccHHHHHhhCCCCCeEEEECCEEEecchhhcccCCchHHHHHHcCCchHHHHHHHCCCHHHHHHHHcCccE-EEC
Confidence 467899999999999999999999999999999999999999999999999999999987 888899999999999 898
Q ss_pred Cccchhh
Q 013209 82 DFEVSEI 88 (447)
Q Consensus 82 ~~~~~~~ 88 (447)
+++.+++
T Consensus 81 ~~~~~~~ 87 (88)
T d1cyoa_ 81 PDDRSKI 87 (88)
T ss_dssp GGGGGGC
T ss_pred ccccCcC
Confidence 7766543
No 2
>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.92 E-value=1e-26 Score=176.93 Aligned_cols=83 Identities=35% Similarity=0.667 Sum_probs=77.6
Q ss_pred CccCCCCCHHHHhcccCCCCeEEEEcCEEEEcccccccccccccceecccCCChhHHHHhc-CchhHHHhhhhccCCccc
Q 013209 2 EAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAY-HPGTAWQYLDKLFTGYYV 80 (447)
Q Consensus 2 ~~~~~~~~~~e~~~h~~~~~~~v~i~g~vyd~t~~~~~hpgg~~~i~~~~g~D~t~~f~~~-H~~~~~~~l~~~~vg~~~ 80 (447)
+|..+.||++||++|++.++|||+|+|+|||||+|++.||||..+|+.++|+|+|+.|+++ |+..++++|++|+|| ++
T Consensus 1 ep~~~~yt~~Ev~~H~~~~d~Wvii~g~VYDvT~f~~~HPGG~~~i~~~aG~D~T~~f~~~hhs~~a~~~l~~~~IG-~l 79 (86)
T d1euea_ 1 DPAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEILLEQAGADATESFEDIGHSPDAREMLKQYYIG-DV 79 (86)
T ss_dssp CCSCCEECHHHHTTCEETTEEEEEETTEEEECGGGGGGCTTCSHHHHTTTTSBCHHHHHHHTCCHHHHHHGGGGEEE-EE
T ss_pred CCCCCEECHHHHHhhCCCCCEEEEECCEEEecceeeeccCcchHHHHHHCCcCHHHHHHHhCCCHHHHHHHHhCcce-EE
Confidence 4678999999999999999999999999999999999999999999999999999999986 888899999999999 88
Q ss_pred cCccc
Q 013209 81 QDFEV 85 (447)
Q Consensus 81 ~~~~~ 85 (447)
++++.
T Consensus 80 ~~~~~ 84 (86)
T d1euea_ 80 HPNDL 84 (86)
T ss_dssp CGGGC
T ss_pred CcccC
Confidence 87654
No 3
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]}
Probab=99.92 E-value=4.9e-26 Score=171.40 Aligned_cols=76 Identities=32% Similarity=0.577 Sum_probs=71.6
Q ss_pred cCCCCCHHHHhcccCCCCeEEEEcCEEEEcccccccccccccceecccCCChhHHHHhc-----CchhHHHhhhhccCCc
Q 013209 4 EKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAY-----HPGTAWQYLDKLFTGY 78 (447)
Q Consensus 4 ~~~~~~~~e~~~h~~~~~~~v~i~g~vyd~t~~~~~hpgg~~~i~~~~g~D~t~~f~~~-----H~~~~~~~l~~~~vg~ 78 (447)
++|.||++||++|+++++|||+|+|+|||||+|+++||||.++|..++|+|+|+.|++. ||..|+++|++|+||
T Consensus 1 slp~~t~~ev~~H~~~~d~Wivi~g~VYDvT~f~~~HPGG~~~l~~~aGkD~t~~F~~~~~~~~Hs~~a~~~L~~~~IG- 79 (81)
T d1cxya_ 1 TLPVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEPHSSLAARLLQRYLIG- 79 (81)
T ss_dssp CCCBCCHHHHTTCEETTEEEEEETTEEEECTTTGGGCCSSTTTTGGGTTSBCHHHHHHTTTTCCCCHHHHHHHHHTEEE-
T ss_pred CcCccCHHHHHhhCCCCCEEEEECCEEEeccceeecCCCcHHHHHHHcCCcchHHHHhcCCcccCCHHHHHHHHhCCCe-
Confidence 36899999999999999999999999999999999999999999999999999999854 889999999999999
Q ss_pred cc
Q 013209 79 YV 80 (447)
Q Consensus 79 ~~ 80 (447)
+|
T Consensus 80 ~L 81 (81)
T d1cxya_ 80 TL 81 (81)
T ss_dssp EC
T ss_pred eC
Confidence 54
No 4
>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.89 E-value=1.2e-24 Score=169.04 Aligned_cols=83 Identities=33% Similarity=0.488 Sum_probs=75.1
Q ss_pred CccCCCCCHHHHhcccCCCCeEEEEcCEEEEcccccccccccccceecccCCChhHHHHhcCchhHH--HhhhhccCCcc
Q 013209 2 EAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYY 79 (447)
Q Consensus 2 ~~~~~~~~~~e~~~h~~~~~~~v~i~g~vyd~t~~~~~hpgg~~~i~~~~g~D~t~~f~~~H~~~~~--~~l~~~~vg~~ 79 (447)
+...+.||++||++|++.++|||+|+|+|||||+|++.||||.++|..++|+|+|+.|+++|+..+. .+|++|+|| .
T Consensus 5 ~~~~~~it~~EV~~H~~~~d~Wvvi~g~VYDvT~f~~~HPGG~~~i~~~aG~D~T~~f~~~H~~~~~~~~~l~~~~IG-~ 83 (97)
T d1kbia2 5 DMNKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPLHAPNVIDKYIAPEKKLG-P 83 (97)
T ss_dssp CSCSCCBCTTHHHHCEETTEEEEEETTEEEECTTTGGGCTTCHHHHHTTTTSBCHHHHGGGSCTTHHHHHSCGGGEEE-E
T ss_pred CCCcCccCHHHHHHhCCCCCEEEEECCEEEecchhhhhCCChHHHHHHHcCccHHHHHHHHCcHHHHHHHHhhcceeE-E
Confidence 3466899999999999999999999999999999999999999999999999999999999998763 378999999 8
Q ss_pred ccCccc
Q 013209 80 VQDFEV 85 (447)
Q Consensus 80 ~~~~~~ 85 (447)
+++...
T Consensus 84 l~~~~~ 89 (97)
T d1kbia2 84 LQGSMP 89 (97)
T ss_dssp BCSCCC
T ss_pred eCCCCC
Confidence 876543
No 5
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=99.89 E-value=2.3e-24 Score=165.92 Aligned_cols=81 Identities=25% Similarity=0.395 Sum_probs=72.2
Q ss_pred cCCCCCHHHHhcccCCCC-eEEEEcCEEEEcccccccccccccceecccCCChhHHHHh--c-CchhHHHhhhhccCCcc
Q 013209 4 EKKYITAEELRTHNKAED-LWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIA--Y-HPGTAWQYLDKLFTGYY 79 (447)
Q Consensus 4 ~~~~~~~~e~~~h~~~~~-~~v~i~g~vyd~t~~~~~hpgg~~~i~~~~g~D~t~~f~~--~-H~~~~~~~l~~~~vg~~ 79 (447)
..|.||++||++|++.++ |||+|+|+|||||+|++.||||..+|+.++|+|+|+.|+. + |+..++++|++|+|| +
T Consensus 1 slP~~T~~Ev~~H~~~~~~~Wiii~g~VYDvT~f~~~HPGG~~~i~~~~G~D~t~~~~~~~~~~~~~a~~~l~~~~IG-~ 79 (91)
T d1soxa2 1 SYPEYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGEPHVLELLQQYKVG-E 79 (91)
T ss_dssp CCCEECHHHHTTCEETTTEEEEEETTEEEECTTTTTTSTTCHHHHGGGTTSBSHHHHHHSGGGGSHHHHHHHHTTEEE-E
T ss_pred CCCccCHHHHHHhCCCCCceEEEECCEEEeccceecccCCcHHHHHHHcCCcccHhHhhccccCcHHHHHHHHcCeeE-E
Confidence 368899999999998665 9999999999999999999999999999999999998874 3 677789999999999 8
Q ss_pred ccCccc
Q 013209 80 VQDFEV 85 (447)
Q Consensus 80 ~~~~~~ 85 (447)
+.+++.
T Consensus 80 l~~~~~ 85 (91)
T d1soxa2 80 LSPDEA 85 (91)
T ss_dssp ECCCCC
T ss_pred ecCccC
Confidence 976544
No 6
>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.87 E-value=1e-23 Score=158.37 Aligned_cols=75 Identities=25% Similarity=0.493 Sum_probs=67.1
Q ss_pred CCCCCHHHHhcccCC-CCeEEEEcCEEEEcccccccccccccceecccCCChhHHHHh--c-CchhHHHhhhhccCCccc
Q 013209 5 KKYITAEELRTHNKA-EDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIA--Y-HPGTAWQYLDKLFTGYYV 80 (447)
Q Consensus 5 ~~~~~~~e~~~h~~~-~~~~v~i~g~vyd~t~~~~~hpgg~~~i~~~~g~D~t~~f~~--~-H~~~~~~~l~~~~vg~~~ 80 (447)
.++||++||++|++. ++|||+|+|+|||||+|++.||||.++|..++|+|+|+.|.. + |+..++++|++|+|| +|
T Consensus 2 ~~v~T~~Ev~~H~~~~~~~Wiii~g~VYDvT~f~~~HPGG~~~i~~~~G~D~t~~~~~~~~h~s~~a~~~l~~~~IG-~L 80 (80)
T d1mj4a_ 2 THIYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVHNQSHVRELLAQYKIG-EL 80 (80)
T ss_dssp CCBCCCC-CTTCEETTTEEEEEETTEEEECTTTGGGSTTCHHHHHTTTTSBSHHHHTTCGGGCSHHHHHHHHTTEEE-EC
T ss_pred CccccHHHHHHhCCCCCCeEEEECCEEEeeeeeHhhcCChhHHHHHHcCCCcchhhhcccccCcHHHHHHHHcCcce-eC
Confidence 578999999999875 569999999999999999999999999999999999998773 3 688899999999999 54
No 7
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=98.52 E-value=2.2e-08 Score=77.09 Aligned_cols=57 Identities=32% Similarity=0.490 Sum_probs=46.0
Q ss_pred ccCCCCCHHHHhcccCCC---CeEEEEcCEEEEcccccc-cccccccceecccCCChhHHHHh
Q 013209 3 AEKKYITAEELRTHNKAE---DLWISIQGKVYDVTEWAK-QHPGGDVPLLNLAGQDVTDAFIA 61 (447)
Q Consensus 3 ~~~~~~~~~e~~~h~~~~---~~~v~i~g~vyd~t~~~~-~hpgg~~~i~~~~g~D~t~~f~~ 61 (447)
...+.||.+||++.++.+ ++||.|+|+|||||.-.+ .=|||. -..++|+|+|.+|..
T Consensus 7 ~~~~~fT~eeL~~ydG~~~~~piyvAi~G~VyDVt~~~~~ygpgg~--Y~~faG~D~sral~~ 67 (109)
T d1t0ga_ 7 HHLEEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGD--YSMFAGKDASRALGK 67 (109)
T ss_dssp SSSEEEEHHHHTTCSSCSSSCCCEEEETTEEEECGGGTTTSTTTCT--TTTTTTEECHHHHHH
T ss_pred hhhhhCCHHHHHHcCCCCCCccEEEEECCEEEEccCCcceECCCCc--ccccccccHHHHHHh
Confidence 456789999999998742 489999999999996433 338887 467899999999863
No 8
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=24.13 E-value=9.1 Score=25.59 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=20.1
Q ss_pred CeEEEEcCEEEEcccccccccc
Q 013209 21 DLWISIQGKVYDVTEWAKQHPG 42 (447)
Q Consensus 21 ~~~v~i~g~vyd~t~~~~~hpg 42 (447)
+.++.++|..|-|.++....||
T Consensus 18 G~~i~~~g~p~~V~e~~~~kpG 39 (73)
T d2eifa1 18 GQYVMIDGVPCEIVDISVSKPG 39 (73)
T ss_dssp TSEEEETTEEEEEEEEEECCCC
T ss_pred CCEEEECCEEEEEEEEEEECCC
Confidence 5789999999999999888888
No 9
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=23.74 E-value=12 Score=24.79 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=19.7
Q ss_pred CeEEEEcCEEEEccccccccccc
Q 013209 21 DLWISIQGKVYDVTEWAKQHPGG 43 (447)
Q Consensus 21 ~~~v~i~g~vyd~t~~~~~hpgg 43 (447)
+.+|.++|+.|-|.++...-||+
T Consensus 17 G~~i~~~g~p~~V~~~~~~kpgk 39 (71)
T d1bkba1 17 GSYVVIDGEPCRVVEIEKSKTGK 39 (71)
T ss_dssp TCEEEETTEEEEEEEEEEECCST
T ss_pred CCEEEECCEEEEEEEEEEECCCC
Confidence 57899999999999997667874
No 10
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.92 E-value=69 Score=19.35 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=18.2
Q ss_pred hHHHHHHHHHcCCCcccc--cHHHHHHHH
Q 013209 390 SPVVRDLCKKHNMPYRSL--SFFEANVWT 416 (447)
Q Consensus 390 ~~~v~~~~~~~g~~Y~~~--~~~~~~~~~ 416 (447)
-+.+|+.|+++|++-.-. .+.+.+.++
T Consensus 20 V~~LK~~lk~~gL~~sGkKa~Li~Ri~~~ 48 (51)
T d1jeqa1 20 VPMLKEACRAYGLKSGLKKQELLEALTKH 48 (51)
T ss_dssp HHHHHHHHHHTTCCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 367899999999986644 344444443
Done!