BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013210
(447 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With
Pyridoximine-5'- Phosphate
Length = 398
Score = 215 bits (548), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 134/368 (36%), Positives = 205/368 (55%), Gaps = 17/368 (4%)
Query: 56 GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
G ++ I ++TF E FA E +IY+R NPT L +++A LE E
Sbjct: 25 GALSTPIFQTSTFVFDSAEQGAARFALE----ESGYIYTRLGNPTTDALEKKLAVLERGE 80
Query: 116 AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDH 175
A TASG+SAI++ L+ LC G H+V+A +YG THA L+H P+ I +FVD +
Sbjct: 81 AGLATASGISAITTTLLTLCQQGDHIVSASAIYGXTHAFLSHSMPK-FGINVSFVDAAKP 139
Query: 176 EMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPAR 234
E + +A+ + TKV+Y E+ +NPTL++ +I ++ +AH +G +VVDNTF SP P +
Sbjct: 140 EEIRAAM-RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYXQQPLQ 198
Query: 235 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE 294
LGAD+VVHS++K+I+G D+I G + G ++ + G + G M+P A+
Sbjct: 199 LGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV--GLKDITGGXMSPFNAWLTLR 256
Query: 295 RIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLL 352
+ LG+RM+ HC AL AR ++ +V YPGL HP +EL + + GG++
Sbjct: 257 GVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP---GGII 313
Query: 353 CLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISA 412
++ +A R M N + +AVSLG ETL+ + EE+ AGI+
Sbjct: 314 SFEIAGGLEAGRRMI---NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITD 370
Query: 413 GLVRMSVG 420
GL+R+SVG
Sbjct: 371 GLIRLSVG 378
>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Methionine Phosphinate
pdb|3JWB|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Norleucine
Length = 398
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 133/368 (36%), Positives = 204/368 (55%), Gaps = 17/368 (4%)
Query: 56 GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
G ++ I ++TF E FA E +IY+R NPT L +++A LE E
Sbjct: 25 GALSTPIFQTSTFVFDSAEQGAARFALE----ESGYIYTRLGNPTTDALEKKLAVLERGE 80
Query: 116 AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDH 175
A TASG+SAI++ L+ LC G H+V+A +YG THA L+H P+ I +FVD +
Sbjct: 81 AGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVSFVDAAKP 139
Query: 176 EMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPAR 234
E + +A+ + TKV+Y E+ +NPTL++ +I ++ +AH +G +VVDNTF SP P +
Sbjct: 140 EEIRAAM-RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQ 198
Query: 235 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE 294
LGAD+VVHS++ +I+G D+I G + G ++ + G + G M+P A+
Sbjct: 199 LGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFV--GLKDITGGCMSPFNAWLTLR 256
Query: 295 RIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLL 352
+ LG+RM+ HC AL AR ++ +V YPGL HP +EL + + GG++
Sbjct: 257 GVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP---GGII 313
Query: 353 CLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISA 412
++ +A R M N + +AVSLG ETL+ + EE+ AGI+
Sbjct: 314 SFEIAGGLEAGRRM---INSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITD 370
Query: 413 GLVRMSVG 420
GL+R+SVG
Sbjct: 371 GLIRLSVG 378
>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With S-Ethyl-Cysteine
Length = 398
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 133/368 (36%), Positives = 204/368 (55%), Gaps = 17/368 (4%)
Query: 56 GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
G ++ I ++TF E FA E +IY+R NPT L +++A LE E
Sbjct: 25 GALSTPIFQTSTFVFDSAEQGAARFALE----ESGYIYTRLGNPTTDALEKKLAVLERGE 80
Query: 116 AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDH 175
A TASG+SAI++ L+ LC G H+V+A +YG THA L+H P+ I +FVD +
Sbjct: 81 AGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVSFVDAAKP 139
Query: 176 EMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPAR 234
E + +A+ + TKV+Y E+ +NPTL++ +I ++ +AH +G +VVDNTF SP P +
Sbjct: 140 EEIRAAM-RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQ 198
Query: 235 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE 294
LGAD+VVHS++ +I+G D+I G + G ++ + G + G M+P A+
Sbjct: 199 LGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFV--GLKDITGGCMSPFNAWLTLR 256
Query: 295 RIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLL 352
+ LG+RM+ HC AL AR ++ +V YPGL HP +EL + + GG++
Sbjct: 257 GVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP---GGII 313
Query: 353 CLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISA 412
++ +A R M N + +AVSLG ETL+ + EE+ AGI+
Sbjct: 314 SFEIAGGLEAGRRMI---NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITD 370
Query: 413 GLVRMSVG 420
GL+R+SVG
Sbjct: 371 GLIRLSVG 378
>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii
Length = 398
Score = 211 bits (537), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 133/368 (36%), Positives = 203/368 (55%), Gaps = 17/368 (4%)
Query: 56 GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
G ++ I ++TF E FA E +IY+R NPT L +++A LE E
Sbjct: 25 GALSTPIFQTSTFVFDSAEQGAARFALE----ESGYIYTRLGNPTTDALEKKLAVLERGE 80
Query: 116 AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDH 175
A TASG+SAI++ L+ LC G H+V+A +YG THA L+H P+ I FVD +
Sbjct: 81 AGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVRFVDAAKP 139
Query: 176 EMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPAR 234
E + +A+ + TKV+Y E+ +NPTL++ +I ++ +AH +G +VVDNTF SP P +
Sbjct: 140 EEIRAAM-RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQ 198
Query: 235 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE 294
LGAD+VVHS++ +I+G D+I G + G ++ + G + G M+P A+
Sbjct: 199 LGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFV--GLKDITGGCMSPFNAWLTLR 256
Query: 295 RIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLL 352
+ LG+RM+ HC AL AR ++ +V YPGL HP +EL + + GG++
Sbjct: 257 GVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP---GGII 313
Query: 353 CLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISA 412
++ +A R M N + +AVSLG ETL+ + EE+ AGI+
Sbjct: 314 SFEIAGGLEAGRRMI---NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITD 370
Query: 413 GLVRMSVG 420
GL+R+SVG
Sbjct: 371 GLIRLSVG 378
>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii
L-Methionine-Lyase
Length = 398
Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 133/368 (36%), Positives = 202/368 (54%), Gaps = 17/368 (4%)
Query: 56 GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
G ++ I ++TF E FA E +IY+R NPT L +++A LE E
Sbjct: 25 GALSTPIFQTSTFVFDSAEQGAARFALE----ESGYIYTRLGNPTTDALEKKLAVLERGE 80
Query: 116 AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDH 175
A TASG+SAI++ L+ LC G H+V+A +YG THA L+H P+ I FVD
Sbjct: 81 AGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVRFVDAGKP 139
Query: 176 EMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPAR 234
E + +A+ + TKV+Y E+ +NPTL++ +I ++ +AH +G +VVDNTF SP P +
Sbjct: 140 EEIRAAM-RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQ 198
Query: 235 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE 294
LGAD+VVHS++ +I+G D+I G + G ++ + G + G M+P A+
Sbjct: 199 LGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFV--GLKDITGGCMSPFNAWLTLR 256
Query: 295 RIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLL 352
+ LG+RM+ HC AL AR ++ +V YPGL HP +EL + + GG++
Sbjct: 257 GVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP---GGII 313
Query: 353 CLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISA 412
++ +A R M N + +AVSLG ETL+ + EE+ AGI+
Sbjct: 314 SFEIAGGLEAGRRMI---NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITD 370
Query: 413 GLVRMSVG 420
GL+R+SVG
Sbjct: 371 GLIRLSVG 378
>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|B Chain B, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|C Chain C, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|D Chain D, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
Length = 398
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 144/389 (37%), Positives = 206/389 (52%), Gaps = 23/389 (5%)
Query: 54 EHGGVNMS-IEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE 112
+HGG + + +ATFT E FAGE + YSR NPT+ L +MA+LE
Sbjct: 23 DHGGALVPPVYQTATFTFPTVEYGAACFAGE----QAGHFYSRISNPTLNLLEARMASLE 78
Query: 113 GTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172
G EA ASGM AI+S L L G V+ TLYG T A L H + VD+
Sbjct: 79 GGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRHVDM 137
Query: 173 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 231
+D + + +A+ T+V+YFES +NP + +A+I ++++A G TVVVDNT+ +P +
Sbjct: 138 ADLQALEAAMTPA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQR 196
Query: 232 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 291
P LGAD+VVHS +K++SG DI AG V G LV+ + QG + G ++P A
Sbjct: 197 PLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIR--LQGLKDMTGAVLSPHDAAL 254
Query: 292 LSERIPHLGLRMKEHCHRALIFAR---RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 348
L I L LRM HC A + A R ++ L + YPGL P + L + ++
Sbjct: 255 LMRGIKTLNLRMDRHCANAQVLAEFLARQPQVEL-IHYPGLASFPQYTLARQQMSQP--- 310
Query: 349 GGLLCLDMETEEKAN-RLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKAL 407
GG++ +++ A R MN LQ +++ AVSLG E+L EE+A
Sbjct: 311 GGMIAFELKGGIGAGRRFMNALQLFSR----AVSLGDAESLAQHPASMTHSSYTPEERAH 366
Query: 408 AGISAGLVRMSVGYLGTLDQRWSQFEKAL 436
GIS GLVR+SVG L +D + ++AL
Sbjct: 367 YGISEGLVRLSVG-LEDIDDLLADVQQAL 394
>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5E|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5F|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
pdb|1E5F|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
Length = 404
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 124/383 (32%), Positives = 209/383 (54%), Gaps = 21/383 (5%)
Query: 62 IEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTA 121
I ++TF + FAG+ +IY+R NPTV NL ++A LE TEA T+
Sbjct: 29 IYQTSTFVFDNCQQGGNRFAGQ----ESGYIYTRLGNPTVSNLEGKIAFLEKTEACVATS 84
Query: 122 SGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSA 181
SGM AI++ ++ + +G H+++ LYG THAL H + I F++ + V
Sbjct: 85 SGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKF-GIQVDFINTAIPGEVKKH 143
Query: 182 IVQGRTKVLYFESISNPTLAVANIPELSRLAHDK-GVTVVVDNTF-SPLVLSPARLGADV 239
+ + TK++YFE+ +NPTL + ++ + + AH + GV V+ DNTF SP++ +P G DV
Sbjct: 144 M-KPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDV 202
Query: 240 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL 299
VVHS +K+I+G D++AG +CG A+L+ + + G + G ++P A+ ++ + L
Sbjct: 203 VVHSATKYINGHTDVVAGLICGKADLLQQIRMV--GIKDITGSVISPHDAWLITRGLSTL 260
Query: 300 GLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357
+RMK A+ A +K KV YPG EDH H++ K +G ++ ++
Sbjct: 261 NIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRM---YGSMITFILK 317
Query: 358 TE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVR 416
+ E A +L++ L+ +AVSLG E+L+ + EE+ AGI+ G++R
Sbjct: 318 SGFEGAKKLLDNLKLIT----LAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIR 373
Query: 417 MSVGYLGTLDQRWSQFEKALSRM 439
+SVG + D+ + F++ L +
Sbjct: 374 LSVG-IEDADELIADFKQGLDAL 395
>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK3|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK4|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
Length = 398
Score = 188 bits (478), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 143/389 (36%), Positives = 205/389 (52%), Gaps = 23/389 (5%)
Query: 54 EHGGVNMS-IEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE 112
+HGG + + +ATFT E FAGE + YSR NPT+ L +MA+LE
Sbjct: 23 DHGGALVPPVYQTATFTFPTVEYGAACFAGE----QAGHFYSRISNPTLNLLEARMASLE 78
Query: 113 GTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172
G EA ASGM AI+S L L G V+ TLYG T A L H + VD+
Sbjct: 79 GGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGHTFAFLHHGIGE-FGVKLRHVDM 137
Query: 173 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 231
+D + + +A+ T+V+YFES +NP + +A+I ++++A G TVVVDNT+ +P +
Sbjct: 138 ADLQALEAAMTPA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQR 196
Query: 232 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 291
P LGAD+VVHS + ++SG DI AG V G LV+ + QG + G ++P A
Sbjct: 197 PLELGADLVVHSATXYLSGHGDITAGIVVGSQALVDRIR--LQGLKDMTGAVLSPHDAAL 254
Query: 292 LSERIPHLGLRMKEHCHRALIFAR---RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 348
L I L LRM HC A + A R ++ L + YPGL P + L + ++
Sbjct: 255 LMRGIKTLNLRMDRHCANAQVLAEFLARQPQVEL-IHYPGLASFPQYTLARQQMSQP--- 310
Query: 349 GGLLCLDMETEEKAN-RLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKAL 407
GG++ +++ A R MN LQ +++ AVSLG E+L EE+A
Sbjct: 311 GGMIAFELKGGIGAGRRFMNALQLFSR----AVSLGDAESLAQHPASMTHSSYTPEERAH 366
Query: 408 AGISAGLVRMSVGYLGTLDQRWSQFEKAL 436
GIS GLVR+SVG L +D + ++AL
Sbjct: 367 YGISEGLVRLSVG-LEDIDDLLADVQQAL 394
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1UKJ|A Chain A, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|B Chain B, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|C Chain C, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|D Chain D, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|2O7C|A Chain A, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|B Chain B, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|C Chain C, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|D Chain D, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
Length = 398
Score = 188 bits (478), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 143/389 (36%), Positives = 205/389 (52%), Gaps = 23/389 (5%)
Query: 54 EHGGVNMS-IEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE 112
+HGG + + +ATFT E FAGE + YSR NPT+ L +MA+LE
Sbjct: 23 DHGGALVPPVYQTATFTFPTVEYGAACFAGE----QAGHFYSRISNPTLNLLEARMASLE 78
Query: 113 GTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172
G EA ASGM AI+S L L G V+ TLYG T A L H + VD+
Sbjct: 79 GGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRHVDM 137
Query: 173 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 231
+D + + +A+ T+V+YFES +NP + +A+I ++++A G TVVVDNT+ +P +
Sbjct: 138 ADLQALEAAMTPA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQR 196
Query: 232 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 291
P LGAD+VVHS + ++SG DI AG V G LV+ + QG + G ++P A
Sbjct: 197 PLELGADLVVHSATXYLSGHGDITAGIVVGSQALVDRIR--LQGLKDMTGAVLSPHDAAL 254
Query: 292 LSERIPHLGLRMKEHCHRALIFAR---RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 348
L I L LRM HC A + A R ++ L + YPGL P + L + ++
Sbjct: 255 LMRGIKTLNLRMDRHCANAQVLAEFLARQPQVEL-IHYPGLASFPQYTLARQQMSQP--- 310
Query: 349 GGLLCLDMETEEKAN-RLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKAL 407
GG++ +++ A R MN LQ +++ AVSLG E+L EE+A
Sbjct: 311 GGMIAFELKGGIGAGRRFMNALQLFSR----AVSLGDAESLAQHPASMTHSSYTPEERAH 366
Query: 408 AGISAGLVRMSVGYLGTLDQRWSQFEKAL 436
GIS GLVR+SVG L +D + ++AL
Sbjct: 367 YGISEGLVRLSVG-LEDIDDLLADVQQAL 394
>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|B Chain B, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|C Chain C, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|D Chain D, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3NNP|A Chain A, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NNP|B Chain B, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NMY|A Chain A, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|B Chain B, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|C Chain C, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|D Chain D, Native Structure Of Xometc At Ph 9.0
Length = 400
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 135/388 (34%), Positives = 196/388 (50%), Gaps = 23/388 (5%)
Query: 55 HGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114
HGG + +T VM P +A + F YSR NPT R +AALEG
Sbjct: 26 HGGQSPD---PSTGAVMPPIYATSTYAQSSPGEHQGFEYSRTHNPTRFAYERCVAALEGG 82
Query: 115 EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD 174
A+ ASGM+A S+V M+L +G HVVA LYGGT L R + +FVD++D
Sbjct: 83 TRAFAFASGMAATSTV-MELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTD 141
Query: 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPA 233
+AI + TK+++ E+ +NP L + +I ++ +A G+ VVDNTF SP++ P
Sbjct: 142 PAAFKAAI-RADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPL 200
Query: 234 RLGADVVVHSISKFISGGADIIAG-AVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFE 291
LGAD+VVHS +K+++G +D++ G AV G A L M L +G P +F
Sbjct: 201 SLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNS----IGGVQGPFDSFL 256
Query: 292 LSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFG 349
+ L LRM+ HC AL A+ ++ KV+YPGL HP H L K + GFG
Sbjct: 257 ALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAK---RQMSGFG 313
Query: 350 GLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALA 408
G++ + ++ + A R + + +A SLG E+L+ + +
Sbjct: 314 GIVSIVLKGGFDAAKRFCEKTELFT----LAESLGGVESLVNHPAVMTHASIPVARREQL 369
Query: 409 GISAGLVRMSVGYLGTLDQRWSQFEKAL 436
GIS LVR+SVG D R E+AL
Sbjct: 370 GISDALVRLSVGIEDLGDLR-GDLERAL 396
>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEL|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEM|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEO|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEP|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
Length = 389
Score = 171 bits (434), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 182/349 (52%), Gaps = 18/349 (5%)
Query: 92 IYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGT 151
IYSR NPTV + ++EG + SGM AISS + G H++A TLYG T
Sbjct: 52 IYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCT 111
Query: 152 HALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL 211
+L TH+ PR I +D SD E V +A + TK++Y ES +NPT V++I ++ +
Sbjct: 112 VSLFTHWLPRF-GIEVDLIDTSDVEKVKAAW-KPNTKMVYLESPANPTCKVSDIKGIAVV 169
Query: 212 AHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSM 269
H++G +VVD TF SP L P LGAD+ +HS+SK+I+G D+I G A + ++
Sbjct: 170 CHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATI 229
Query: 270 MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYP 327
+ A G M P AF + + L +RM+ H L A+ +++ +KV +P
Sbjct: 230 KFYRKDA----GSLMAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHP 285
Query: 328 GLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYET 387
GLE P H++ K G+G +M++ E A +LM +L+ +AVSLG +T
Sbjct: 286 GLESFPGHDIAKKQMT---GYGSTFLFEMKSFEAAKKLMEHLKVCT----LAVSLGCVDT 338
Query: 388 LMXXXXXXXXXELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436
L+ + GI+ LVR+SVG + +D + ++AL
Sbjct: 339 LIEHPASMTHAAVPENIMRKQGITPELVRISVG-IENVDDIIADLKQAL 386
>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|B Chain B, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|C Chain C, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|D Chain D, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3AEJ|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEM|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
Length = 389
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 118/349 (33%), Positives = 181/349 (51%), Gaps = 18/349 (5%)
Query: 92 IYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGT 151
IYSR NPTV + ++EG + SGM AISS + G H++A TLYG T
Sbjct: 52 IYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCT 111
Query: 152 HALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL 211
+L TH+ PR I +D SD E V +A + TK++Y ES +NPT V++I ++ +
Sbjct: 112 VSLFTHWLPRF-GIEVDLIDTSDVEKVKAAW-KPNTKMVYLESPANPTCKVSDIKGIAVV 169
Query: 212 AHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSM 269
H++G +VVD TF SP L P LGAD+ +HS+S +I+G D+I G A + ++
Sbjct: 170 CHERGARLVVDATFTSPCFLKPLELGADIALHSVSXYINGHGDVIGGVSSAKTAEDIATI 229
Query: 270 MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYP 327
+ A G M P AF + + L +RM+ H L A+ +++ +KV +P
Sbjct: 230 KFYRKDA----GSLMAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHP 285
Query: 328 GLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYET 387
GLE P H++ K G+G +M++ E A +LM +L+ +AVSLG +T
Sbjct: 286 GLESFPGHDIAKKQMT---GYGSTFLFEMKSFEAAKKLMEHLKVCT----LAVSLGCVDT 338
Query: 388 LMXXXXXXXXXELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436
L+ + GI+ LVR+SVG + +D + ++AL
Sbjct: 339 LIEHPASMTHAAVPENIMRKQGITPELVRISVG-IENVDDIIADLKQAL 386
>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
pdb|1PFF|B Chain B, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
Length = 331
Score = 169 bits (427), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 108/322 (33%), Positives = 177/322 (54%), Gaps = 17/322 (5%)
Query: 104 LSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRAC 163
L ++A LE EA TASGM AI++ + +G H+++ LYG THAL H R
Sbjct: 3 LEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQL-RKF 61
Query: 164 NITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH-DKGVTVVVD 222
+ F+D++ + + + T+++YFE+ +NPTL V +I + + A K + V+VD
Sbjct: 62 GVEVDFIDMAVPGNIEKHL-KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVD 120
Query: 223 NTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLG 281
NTF SP++ +P LG D+VVHS +K+I+G D++AG VC A+++ + QG + G
Sbjct: 121 NTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKS--QGIKDITG 178
Query: 282 PTMNPKVAFELSERIPHLGLRMK---EHCHRALIFARRMKKLGLKVLYPGLEDHPHHELL 338
++P A+ ++ L +R+K E+ + F K + KV YPGL DHP HE+
Sbjct: 179 AIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVK-KVYYPGLPDHPGHEIA 237
Query: 339 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXX 398
K FG ++ D++ EKA ++++ + +AVSLG E+L+
Sbjct: 238 KKQMKM---FGSMIAFDVDGLEKAKKVLDNCHVVS----LAVSLGGPESLIQHPASMTHA 290
Query: 399 ELNAEEKALAGISAGLVRMSVG 420
+ EE+ AG++ L+R+SVG
Sbjct: 291 GVPKEEREAAGLTDNLIRLSVG 312
>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|B Chain B, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|C Chain C, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|D Chain D, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|E Chain E, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|F Chain F, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|G Chain G, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|H Chain H, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1I41|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I43|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I48|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
Length = 445
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 175/337 (51%), Gaps = 16/337 (4%)
Query: 88 RDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTL 147
R F Y R+ NPT + L +++ALEG E+ ASGM A + +L+ L +GGH+V
Sbjct: 103 RASFEYGRYGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDC 162
Query: 148 YGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 207
Y T + P+ IT T +D +D + A+ Q + + + ES +NP L +I
Sbjct: 163 YRKTRIFIETILPKM-GITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIEL 221
Query: 208 LSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV 266
+S+L H+KG V +D TF +PL LGAD+V+HS +KF+ G D++AG + GP LV
Sbjct: 222 VSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLV 281
Query: 267 NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKV 324
+ + +LH +LG +NP A+ + + L LR+++ AL A ++ V
Sbjct: 282 SEIRNLHH----ILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHV 337
Query: 325 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLG 383
YPGL+ HP H + K GFGG + +++ + + ++ L + ++A S G
Sbjct: 338 YYPGLQSHPEHHIAKKQMT---GFGGAVSFEVDGDLLTTAKFVDAL----KIPYIAPSFG 390
Query: 384 YYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 420
E+++ +L+ ++A GI LVR S G
Sbjct: 391 GCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG 427
>pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|B Chain B, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|C Chain C, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|D Chain D, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
Length = 414
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 179/366 (48%), Gaps = 21/366 (5%)
Query: 78 RMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSS 137
+ FAGEL D ++YSR+ NPTV ++ +EG AA+ TASGM+A+ + L L +
Sbjct: 64 KSFAGEL----DHYVYSRYGNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALLGA 119
Query: 138 GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISN 197
G +VAAR+L+G + + PR + T FVD D A+ T+ ++FE+ SN
Sbjct: 120 GDRLVAARSLFGSCFVVCSEILPR-WGVQTVFVDGDDLSQWERAL-SVPTQAVFFETPSN 177
Query: 198 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIA 256
P ++ +I ++ LAH G VV+DN F +PL+ LG DVVV+S + I G ++
Sbjct: 178 PMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTXHIDGQGRVLG 237
Query: 257 GAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 316
GA+ G ++ + Q + GP M+ A+ L + + L +R++ A A
Sbjct: 238 GAILGDREYIDGPV---QKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEF 294
Query: 317 MK--KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL---CLDMETEEKANRLMNYLQN 371
+ V YP L HP ++L A ++ GG + LD + R L
Sbjct: 295 LNGHPSVRWVRYPYLPSHPQYDL----AKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDK 350
Query: 372 YAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 431
++ +LG ++L+ + E +A G+ G+VR+SVG L D +
Sbjct: 351 MRLID-ISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVG-LEDTDDLIAD 408
Query: 432 FEKALS 437
++ALS
Sbjct: 409 IDRALS 414
>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|B Chain B, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|C Chain C, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|D Chain D, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
Length = 386
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/330 (31%), Positives = 168/330 (50%), Gaps = 12/330 (3%)
Query: 93 YSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTH 152
YSR NPT + R +A LEG A T +GMSAI V G +VA YGG++
Sbjct: 46 YSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSY 105
Query: 153 ALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 212
L R C FVD D + + +A+ + + K++ ES SNP L V +I ++ LA
Sbjct: 106 RLFDSLAKRGC-YRVLFVDQGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLA 163
Query: 213 HDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 271
+ G VVDNTF SP + +P LGAD+V+HS + +++G +D++AG V V + +
Sbjct: 164 REVGAVSVVDNTFLSPALQNPLALGADLVLHSCTXYLNGHSDVVAGVVIAKDPDVVTELA 223
Query: 272 LHQGALMLLGPTMNPKVAFE-LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLE 330
+ + G + + L +P + L + +A++ + + L K+ +P L
Sbjct: 224 WWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRN--AQAIVKYLQTQPLVKKLYHPSLP 281
Query: 331 DHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMX 390
++ HE+ A ++ GFG +L +++ +E+ L +L + F +A SLG E+L+
Sbjct: 282 ENQGHEI---AARQQKGFGAMLSFELDGDEQT--LRRFLGGLSLF-TLAESLGGVESLIS 335
Query: 391 XXXXXXXXELNAEEKALAGISAGLVRMSVG 420
+ E +A AGIS L+R+S G
Sbjct: 336 HAATMTHAGMAPEARAAAGISETLLRISTG 365
>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
Length = 464
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 177/353 (50%), Gaps = 28/353 (7%)
Query: 75 TMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL 134
T ++ A E GP + Y+R NPT L +A L+ + A+C SGM+A+S+V L
Sbjct: 113 TFKQPSAIENGP----YDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAV-THL 167
Query: 135 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES 194
+G +VA +YGG+ LL+ PR+ + V+ + + V +AI +TK+++ ES
Sbjct: 168 IKNGEEIVAGDDVYGGSDRLLSQVVPRS-GVVVKRVNTTKLDEVAAAI-GPQTKLVWLES 225
Query: 195 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGAD 253
+NP +++I ++S +AH +G V+VDN+ SP++ P LGAD+V+HS +KFI+G +D
Sbjct: 226 PTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSD 285
Query: 254 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIF 313
++AG + + + Q + G + P + I + LR+++ A
Sbjct: 286 VMAGVLAVKGEKLAKEVYFLQNS---EGSGLAPFDCWLCLRGIKTMALRIEKQQENARKI 342
Query: 314 A------RRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMN 367
A R+K KV Y GL DHP H L S A G G + + L
Sbjct: 343 AMYLSSHPRVK----KVYYAGLPDHPGHHLHFSQAK---GAGSVFSFITGSVA----LSK 391
Query: 368 YLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 420
+L ++ +AVS G ++L+ + AE + G++ LVR+S G
Sbjct: 392 HLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG 444
>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
pdb|2CTZ|B Chain B, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
Length = 421
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 115/396 (29%), Positives = 176/396 (44%), Gaps = 46/396 (11%)
Query: 59 NMSIEASATFTVMEPETMRRMFA-GELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117
+ I + ++ PE +FA E G IYSR NPTV L +++AALEG +AA
Sbjct: 22 QVPIYPTTSYVFKSPEHAANLFALKEFG-----NIYSRIMNPTVDVLEKRLAALEGGKAA 76
Query: 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEM 177
TASG +A L L +G ++V+ LYGGT R I F +
Sbjct: 77 LATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKR-LGIEVRFTSREERPE 135
Query: 178 VNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARL 235
A+ +T+ + ESI NP L + ++ L++ A +KGV ++VDNTF +L P
Sbjct: 136 EFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAW 195
Query: 236 GADVVVHSISKFISGGADIIAGAVCGPAN----------LVNSMMDLHQ-------GALM 278
GA +V HS++K++ G +IAGA+ N L H G L
Sbjct: 196 GAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELA 255
Query: 279 LL-----------GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM--KKLGLKVL 325
+ G + P A+ + + L LR + H L A + + V
Sbjct: 256 FIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVN 315
Query: 326 YPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGY 384
YPGL HPHH+ + + G +L ++ E A R ++ L+ + ++G
Sbjct: 316 YPGLPHHPHHDRAQKYFKGKP--GAVLTFGLKGGYEAAKRFISRLKLISHL----ANVGD 369
Query: 385 YETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 420
TL +L+ EE+A AG+S +VR+SVG
Sbjct: 370 TRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVG 405
>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|B Chain B, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|C Chain C, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|D Chain D, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
Length = 393
Score = 131 bits (329), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 112/386 (29%), Positives = 190/386 (49%), Gaps = 42/386 (10%)
Query: 55 HGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114
HG V I S TF P A +G + YSR NP NL R +AALE
Sbjct: 22 HGSVIEPISLSTTFKQSSP-------ANPIGT----YEYSRSQNPNRENLERAVAALENA 70
Query: 115 EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN---ITTTFVD 171
+ +SG SA ++ ++Q G H V+ +YGGTH +F + N + T+F +
Sbjct: 71 QYGLAFSSG-SATTATILQSLPQGSHAVSIGDVYGGTH----RYFTKVANAHGVETSFTN 125
Query: 172 ISDHEMVNS--AIVQGRTKVLYFESISNPTLAVANIPELSRL----AHDKGVTVVVDNTF 225
+++N +++ TK+++ E+ +NPTL V +I +++ L A + V +VVDNTF
Sbjct: 126 ----DLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTF 181
Query: 226 -SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTM 284
SP + +P GAD+VVHS +K+I+G +D++ G + + + Q A +G
Sbjct: 182 LSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA---IGAIP 238
Query: 285 NPKVAFELSERIPHLGLRMKEHCHRALIFARRM---KKLGLKVLYPGLEDHPHHELLKSM 341
+P A+ + L LR+++ A A + K+ + V YPGL+ HP+++++
Sbjct: 239 SPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQ 298
Query: 342 ANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXEL 400
G GG++ ++ E A++ + + + +A SLG E+L+ +
Sbjct: 299 HRDALG-GGMISFRIKGGAEAASKFASSTRLFT----LAESLGGIESLLEVPAVMTHGGI 353
Query: 401 NAEEKALAGISAGLVRMSVGYLGTLD 426
E + +G+ LVR+SVG T D
Sbjct: 354 PKEAREASGVFDDLVRISVGIEDTDD 379
>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase
pdb|3ELP|A Chain A, Structure Of Cystationine Gamma Lyase
pdb|3ELP|C Chain C, Structure Of Cystationine Gamma Lyase
pdb|3ELP|D Chain D, Structure Of Cystationine Gamma Lyase
Length = 410
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/370 (27%), Positives = 184/370 (49%), Gaps = 22/370 (5%)
Query: 58 VNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117
V E + V+ P ++ F F YSR NPT L + +AAL+G +
Sbjct: 30 VGQDPEQWTSRAVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYC 89
Query: 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN---ITTTFVDISD 174
ASG++A ++ L +G ++ +YGGT+ +F + + + +FVD S
Sbjct: 90 LAFASGLAATVTI-THLLKAGDQIICMDDVYGGTN----RYFRQVASEFGLKISFVDCSK 144
Query: 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVVDNTF-SPLVLSP 232
+++ +AI TK+++ E+ +NPT V +I + + H G + +VVDNTF SP P
Sbjct: 145 IKLLEAAITP-ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRP 203
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292
LGAD+ ++S +K+++G +D++ G V +++ + Q + LG +P +
Sbjct: 204 LALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNS---LGAVPSPIDCYLC 260
Query: 293 SERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG 350
+ + L +RM++H + A+ ++ KV+YPGL HP HEL+K G G
Sbjct: 261 NRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT---GCTG 317
Query: 351 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGI 410
++ ++ + + +L+N F +A SLG +E+L + ++ + GI
Sbjct: 318 MVTFYIKGTLQHAEI--FLKNLKLFT-LAESLGGFESLAELPAIMTHASVLKNDRDVLGI 374
Query: 411 SAGLVRMSVG 420
S L+R+SVG
Sbjct: 375 SDTLIRLSVG 384
>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|B Chain B, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|C Chain C, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|D Chain D, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|3COG|A Chain A, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|B Chain B, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|C Chain C, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|D Chain D, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
Length = 403
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/370 (27%), Positives = 184/370 (49%), Gaps = 22/370 (5%)
Query: 58 VNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117
V E + V+ P ++ F F YSR NPT L + +AAL+G +
Sbjct: 26 VGQDPEQWTSRAVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYC 85
Query: 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN---ITTTFVDISD 174
ASG++A ++ L +G ++ +YGGT+ +F + + + +FVD S
Sbjct: 86 LAFASGLAATVTI-THLLKAGDQIICMDDVYGGTN----RYFRQVASEFGLKISFVDCSK 140
Query: 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVVDNTF-SPLVLSP 232
+++ +AI TK+++ E+ +NPT V +I + + H G + +VVDNTF SP P
Sbjct: 141 IKLLEAAITP-ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRP 199
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292
LGAD+ ++S +K+++G +D++ G V +++ + Q + LG +P +
Sbjct: 200 LALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNS---LGAVPSPIDCYLC 256
Query: 293 SERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG 350
+ + L +RM++H + A+ ++ KV+YPGL HP HEL+K G G
Sbjct: 257 NRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT---GCTG 313
Query: 351 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGI 410
++ ++ + + +L+N F +A SLG +E+L + ++ + GI
Sbjct: 314 MVTFYIKGTLQHAEI--FLKNLKLFT-LAESLGGFESLAELPAIMTHASVLKNDRDVLGI 370
Query: 411 SAGLVRMSVG 420
S L+R+SVG
Sbjct: 371 SDTLIRLSVG 380
>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QI6|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
Length = 392
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 117/369 (31%), Positives = 170/369 (46%), Gaps = 30/369 (8%)
Query: 56 GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
G VN I AS+TF +G R + Y+R NPT L +AA+E
Sbjct: 34 GAVNAPIYASSTFA-----------QDGVGGLRGGYEYARTGNPTRTALEAALAAVEDAA 82
Query: 116 AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDH 175
+SGM+A L + G HVV YGGT L+ F N+ T V ++D
Sbjct: 83 FGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVF-TGWNVEYTPVALADL 141
Query: 176 EMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPAR 234
+ V +AI + T++++ E+ +NP L++A+I +++L D V+VDNTF SP + P
Sbjct: 142 DAVRAAI-RPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQPLS 200
Query: 235 LGADVVVHSISKFISGGADIIAGA-VCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELS 293
LGADVV+HS + +I G +D++ GA V L S L GA G P A+
Sbjct: 201 LGADVVLHSTTXYIGGHSDVVGGALVTNDEELDQSFAFLQNGA----GAVPGPFDAYLTM 256
Query: 294 ERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGL 351
+ L LRM+ H A A + + VLYPGL HP H + A + GFGG+
Sbjct: 257 RGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAV---AARQMRGFGGM 313
Query: 352 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGIS 411
+ + M A + N +A SLG E+L+ + +
Sbjct: 314 VSVRMRAGRTAAEQLCAKTN---IFILAESLGSVESLIEHPSAMTHASTAGSQLE---VP 367
Query: 412 AGLVRMSVG 420
LVR+SVG
Sbjct: 368 DDLVRLSVG 376
>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8,Oah2
Length = 412
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 123/417 (29%), Positives = 189/417 (45%), Gaps = 59/417 (14%)
Query: 55 HGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114
HG V + I A A + E + FA G ++Y+R +PT L ++ ALEG
Sbjct: 17 HGAVGLPIYAVAAYGFKTLEEGQERFATGEG-----YVYARQKDPTAKALEERLKALEGA 71
Query: 115 EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD 174
A ASG +A + L+ L G VVAA+ L+G T L +T +VD +
Sbjct: 72 LEAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVL-SLMGVTVRYVD-PE 129
Query: 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSP 232
E V A+ +T+ ++ E+++NP L V ++ L+ LA + GV +VVDNTF + + P
Sbjct: 130 PEAVREAL-SAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRP 188
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE- 291
GA VVV S++ + SG ++ GAV ++ +L + L P + ++ +E
Sbjct: 189 LAWGAHVVVESLTXWASGHGSVLGGAV------LSRETELWRNYPQFLQPDLKGQIPWEA 242
Query: 292 -----LSERIPHLG------------------------LRMKEHCHRALIFARRMK-KLG 321
ER+ LG LR+ A A R++
Sbjct: 243 LRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPK 302
Query: 322 LKVL-YPGLEDHPHHELLKSMANKEYGFGG-LLCLDMETEEKANRLMNYLQNYAQFGFMA 379
+K L YPGL + P H A K GG +L LD+ E+A+R + ++ A
Sbjct: 303 VKALRYPGLPEDPAHR----NARKYLASGGPILTLDLGDLERASRFLGAIRL-----LKA 353
Query: 380 VSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436
+LG TL+ L E + AG++ GLVR+SVG LD + FE+AL
Sbjct: 354 ANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDL-LALFEEAL 409
>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
pdb|3RI6|B Chain B, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
Length = 430
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 114/392 (29%), Positives = 190/392 (48%), Gaps = 45/392 (11%)
Query: 55 HGGVNMSIEASATFTVMEPETMRRMFAGE-LGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
HG + + +A F + + ++ G LG +YSR NPTV +L +++ L G
Sbjct: 42 HGALRTPVYDNAAFEFENSDEIAQVSLGRALG-----HVYSRSSNPTVEDLEQRLKNLTG 96
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
SGM+AIS+ ++ L +G VV L+G T +L P + I FVD+
Sbjct: 97 ALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLP-SFGIEVRFVDVM 155
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSP 232
D V A + TK+L+ E+ISNP L VA++ LS++ H KG+ +VVD T + P +L
Sbjct: 156 DSLAVEHACDET-TKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEA 214
Query: 233 ARLGADVVVHSISKFISGGADIIAG--------------------AVCGP-ANLVNSMMD 271
RLG D+ V S +KFISGG + G A GP A L + +
Sbjct: 215 KRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKE 274
Query: 272 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLK--VLYPGL 329
+ Q LGP+++P A+ S + + LR++ C A A + + V +P L
Sbjct: 275 VFQN----LGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSL 330
Query: 330 EDHPHHELLKSMANKEYGFGG-LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL 388
D P + ++A +++ + G +L ++E++E + R M+ L+ + A ++ ++L
Sbjct: 331 PDSPFY----AIAKRQFRYAGSILTFELESKEASYRFMDALKLIRR----ATNIHDNKSL 382
Query: 389 MXXXXXXXXXELNAEEKALAGISAGLVRMSVG 420
+ + EE+ IS ++R+SVG
Sbjct: 383 ILSPYHVIYALNSHEERLKLEISPAMMRLSVG 414
>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
pdb|1CL2|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
Length = 395
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 96/398 (24%), Positives = 174/398 (43%), Gaps = 39/398 (9%)
Query: 56 GGVNMSIE--ASATFTVMEPE--TMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAAL 111
G VN I+ +S F +E + R GEL Y R T +L + M L
Sbjct: 22 GAVNSVIQRASSLVFDSVEAKKHATRNRANGEL-------FYGRRGTLTHFSLQQAMCEL 74
Query: 112 EGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171
EG G +A+++ ++ G HV+ T Y + + + +TT++ D
Sbjct: 75 EGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTSWFD 133
Query: 172 ISDHEMVNSAIV---QGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFS 226
++ + IV Q TK+++ ES + T+ V ++P + +++DNT++
Sbjct: 134 ----PLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWA 189
Query: 227 PLVLSPA-RLGADVVVHSISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTM 284
VL A G DV + + +K++ G +D + G AVC L + A L+G +
Sbjct: 190 AGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCN----ARCWEQLRENA-YLMGQMV 244
Query: 285 NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHELLKSMA 342
+ A+ S + LG+R+++H +L A + + +V +P L HE K
Sbjct: 245 DADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWK--- 301
Query: 343 NKEY-GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELN 401
+++ G GL ++ + L NYL N++ F MA S G YE+L+ +
Sbjct: 302 -RDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFS-MAYSWGGYESLILANQPEHIAAIR 359
Query: 402 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439
+ + S L+R+ +G L +D + + +R+
Sbjct: 360 PQGE--IDFSGTLIRLHIG-LEDVDDLIADLDAGFARI 394
>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2FQ6|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2GQN|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
pdb|2GQN|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
Length = 415
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 96/398 (24%), Positives = 174/398 (43%), Gaps = 39/398 (9%)
Query: 56 GGVNMSIE--ASATFTVMEPE--TMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAAL 111
G VN I+ +S F +E + R GEL Y R T +L + M L
Sbjct: 42 GAVNSVIQRASSLVFDSVEAKKHATRNRANGEL-------FYGRRGTLTHFSLQQAMCEL 94
Query: 112 EGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171
EG G +A+++ ++ G HV+ T Y + + + +TT++ D
Sbjct: 95 EGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTSWFD 153
Query: 172 ISDHEMVNSAIV---QGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFS 226
++ + IV Q TK+++ ES + T+ V ++P + +++DNT++
Sbjct: 154 ----PLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWA 209
Query: 227 PLVLSPA-RLGADVVVHSISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTM 284
VL A G DV + + +K++ G +D + G AVC L + A L+G +
Sbjct: 210 AGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCN----ARCWEQLRENA-YLMGQMV 264
Query: 285 NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHELLKSMA 342
+ A+ S + LG+R+++H +L A + + +V +P L HE K
Sbjct: 265 DADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWK--- 321
Query: 343 NKEY-GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELN 401
+++ G GL ++ + L NYL N++ F MA S G YE+L+ +
Sbjct: 322 -RDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFS-MAYSWGGYESLILANQPEHIAAIR 379
Query: 402 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439
+ + S L+R+ +G L +D + + +R+
Sbjct: 380 PQGE--IDFSGTLIRLHIG-LEDVDDLIADLDAGFARI 414
>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
pdb|1CL1|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
Length = 395
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 95/398 (23%), Positives = 173/398 (43%), Gaps = 39/398 (9%)
Query: 56 GGVNMSIE--ASATFTVMEPE--TMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAAL 111
G VN I+ +S F +E + R GEL Y R T +L + M L
Sbjct: 22 GAVNSVIQRASSLVFDSVEAKKHATRNRANGEL-------FYGRRGTLTHFSLQQAMCEL 74
Query: 112 EGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171
EG G +A+++ ++ G HV+ T Y + + + +TT++ D
Sbjct: 75 EGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTSWFD 133
Query: 172 ISDHEMVNSAIV---QGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFS 226
++ + IV Q TK+++ ES + T+ V ++P + +++DNT++
Sbjct: 134 ----PLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWA 189
Query: 227 PLVLSPA-RLGADVVVHSISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTM 284
VL A G DV + + + ++ G +D + G AVC L + A L+G +
Sbjct: 190 AGVLFKALDFGIDVSIQAATXYLVGHSDAMIGTAVCN----ARCWEQLRENA-YLMGQMV 244
Query: 285 NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHELLKSMA 342
+ A+ S + LG+R+++H +L A + + +V +P L HE K
Sbjct: 245 DADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWK--- 301
Query: 343 NKEY-GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELN 401
+++ G GL ++ + L NYL N++ F MA S G YE+L+ +
Sbjct: 302 -RDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFS-MAYSWGGYESLILANQPEHIAAIR 359
Query: 402 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439
+ + S L+R+ +G L +D + + +R+
Sbjct: 360 PQGE--IDFSGTLIRLHIG-LEDVDDLIADLDAGFARI 394
>pdb|2E7I|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7I|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
Length = 371
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 195 ISNPTLAVANIPELSRLAH---DKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFIS 249
I+ P N+P++ ++A + V ++V+ ++ + +S +GAD +V S K ++
Sbjct: 153 ITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMA 212
Query: 250 GGADI-IAGAVCGPANLVNSMMDLHQGA-LMLLGPTMNPKVAFELSERIPHLGLRMK--- 304
I + G A +V + ++ + LLG T L PH+ R+K
Sbjct: 213 ASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWD 272
Query: 305 EHCHRALIFARRMKKLGLKVLYPGLEDHPH-HELL 338
E +A FA M+KLG+K L D+PH H+L+
Sbjct: 273 EEVEKARRFAAEMEKLGIK----QLGDNPHNHDLM 303
>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1GCK|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1B5P|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
pdb|1B5P|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
Length = 385
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 20/117 (17%)
Query: 172 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL 228
+ D E V AI RTK L S +NPT AV + L+RLA + +V D + L
Sbjct: 151 VPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHL 209
Query: 229 V-----LSPARLGADVVVHSISKFISGGADIIA------GAVCGPANLVNSMMDLHQ 274
+ SP R+ + H+++ ++G A A G CGP ++ +M + +
Sbjct: 210 LYEGEHFSPGRVAPE---HTLT--VNGAAKAFAMTGWRIGYACGPKEVIKAMASVSR 261
>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|E Chain E, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|F Chain F, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|G Chain G, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|H Chain H, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|5BJ4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
pdb|5BJ4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
Length = 385
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 20/117 (17%)
Query: 172 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL 228
+ D E V AI RTK L S +NPT AV + L+RLA + +V D + L
Sbjct: 151 VPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHL 209
Query: 229 V-----LSPARLGADVVVHSISKFISGGADIIA------GAVCGPANLVNSMMDLHQ 274
+ SP R+ + H+++ ++G A A G CGP ++ +M + +
Sbjct: 210 LYEGEHFSPGRVAPE---HTLT--VNGAAKAFAMTGWRIGYACGPKEVIKAMASVSR 261
>pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
Length = 385
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 20/117 (17%)
Query: 172 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL 228
+ D E V AI RTK L S +NPT AV + L+RLA + +V D + L
Sbjct: 151 VPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHL 209
Query: 229 V-----LSPARLGADVVVHSISKFISGGADIIA------GAVCGPANLVNSMMDLHQ 274
+ SP R+ + H+++ ++G A A G CGP ++ +M + +
Sbjct: 210 LYEGEHFSPGRVAPE---HTLT--VNGAAKAFAMTGWRIGYACGPKEVIKAMASVSR 261
>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|C Chain C, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|D Chain D, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
Length = 385
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 20/115 (17%)
Query: 172 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL 228
+ D E V AI RTK L S +NPT AV + L+RLA + +V D + L
Sbjct: 151 VPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHL 209
Query: 229 V-----LSPARLGADVVVHSISKFISGGADIIA------GAVCGPANLVNSMMDL 272
+ SP R+ + H+++ ++G A A G CGP ++ +M +
Sbjct: 210 LYEGEHFSPGRVAPE---HTLT--VNGAAKAFAMTGWRIGYACGPKEVIKAMASV 259
>pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
pdb|1B5O|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
Length = 385
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 20/115 (17%)
Query: 172 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL 228
+ D E V AI RTK L S +NPT AV + L+RLA + +V D + L
Sbjct: 151 VPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHL 209
Query: 229 V-----LSPARLGADVVVHSISKFISGGADIIA------GAVCGPANLVNSMMDL 272
+ SP R+ + H+++ ++G A A G CGP ++ +M +
Sbjct: 210 LYEGEHFSPGRVAPE---HTLT--VNGAAKAFAMTGWRIGYACGPKEVIKAMASV 259
>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus
pdb|1BJW|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus
Length = 382
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
Query: 172 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL 228
+ D E V AI RTK L S +NPT AV + L+RLA + +V D + L
Sbjct: 151 VPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHL 209
Query: 229 V-----LSPARLGADVVVHSISKFISGGADIIA------GAVCGPANLVNSM 269
+ SP R+ + H+++ ++G A A G CGP ++ +M
Sbjct: 210 LYEGEHFSPGRVAPE---HTLT--VNGAAXAFAMTGWRIGYACGPKEVIKAM 256
>pdb|1JG8|A Chain A, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|B Chain B, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|C Chain C, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|D Chain D, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1M6S|A Chain A, Crystal Structure Of Threonine Aldolase
pdb|1M6S|B Chain B, Crystal Structure Of Threonine Aldolase
pdb|1M6S|C Chain C, Crystal Structure Of Threonine Aldolase
pdb|1M6S|D Chain D, Crystal Structure Of Threonine Aldolase
Length = 347
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 108/278 (38%), Gaps = 35/278 (12%)
Query: 69 TVMEP-ETMRRMFA-GELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSA 126
TV +P E MR+ A E+G D +Y +PT+ L R A G EAA SG
Sbjct: 12 TVTKPTEEMRKAMAQAEVGDD----VYGE--DPTINELERLAAETFGKEAALFVPSGTMG 65
Query: 127 ISSVLMQLCSSGGHVV--AARTLYG---GTHALLTHFFPRACNITTTFVDISDHEMVNSA 181
+M G V+ A ++ G A+L+ P +D D V A
Sbjct: 66 NQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDD---VRKA 122
Query: 182 IVQ-----GRTKVLYFESISNPT----LAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP 232
I RT ++ E+ N + + + NI E+ +A + G+ V +D +
Sbjct: 123 IRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGAR----IFN 178
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLV----NSMMDLHQGALMLLGPTMNPKV 288
A + + V V + + ++ +C P V ++ + A +LG M
Sbjct: 179 ASIASGVPVKEYAGYADSVMFCLSXGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAG 238
Query: 289 AFELSERIPHLGL--RMKEHCHRALIFARRMKKLGLKV 324
+ I + R+KE A A ++K++G V
Sbjct: 239 VLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSV 276
>pdb|2FM1|A Chain A, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|B Chain B, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|C Chain C, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|D Chain D, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
Length = 355
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 108/278 (38%), Gaps = 35/278 (12%)
Query: 69 TVMEP-ETMRRMFA-GELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSA 126
TV +P E MR+ A E+G D +Y +PT+ L R A G EAA SG
Sbjct: 20 TVTKPTEEMRKAMAQAEVGDD----VYGE--DPTINELERLAAETFGKEAALFVPSGTMG 73
Query: 127 ISSVLMQLCSSGGHVV--AARTLYG---GTHALLTHFFPRACNITTTFVDISDHEMVNSA 181
+M G V+ A ++ G A+L+ P +D D V A
Sbjct: 74 NQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDD---VRKA 130
Query: 182 IVQ-----GRTKVLYFESISNPT----LAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP 232
I RT ++ E+ N + + + NI E+ +A + G+ V +D +
Sbjct: 131 IRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGAR----IFN 186
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLV----NSMMDLHQGALMLLGPTMNPKV 288
A + + V V + + ++ +C P V ++ + A +LG M
Sbjct: 187 ASIASGVPVKEYAGYADSVMFCLSXGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAG 246
Query: 289 AFELSERIPHLGL--RMKEHCHRALIFARRMKKLGLKV 324
+ I + R+KE A A ++K++G V
Sbjct: 247 VLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSV 284
>pdb|3RYT|A Chain A, The Plexin A1 Intracellular Region In Complex With Rac1
pdb|3RYT|B Chain B, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 626
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 321 GLKVLYPGLEDHPHHELLKSMANKEYG---FGGLL 352
++VL+PG+EDHP + ++ AN E FG LL
Sbjct: 58 AMRVLFPGIEDHPVLKEMEVQANVEKSLTLFGQLL 92
>pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-Glu: External Aldimine Form
pdb|3EIA|B Chain B, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-Glu: External Aldimine Form
Length = 432
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 185 GRTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFS 226
GRT +++F S +NPT A A +L++L A G +V D+ ++
Sbjct: 197 GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYA 241
>pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With L-malate Ion
pdb|2Z1Z|B Chain B, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With L-malate Ion
pdb|3EI5|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Glu: An
External Aldimine Mimic
pdb|3EI5|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Glu: An
External Aldimine Mimic
pdb|3EI6|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Dap: An
External Aldimine Mimic
pdb|3EI6|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Dap: An
External Aldimine Mimic
pdb|3EI7|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana (No Plp)
pdb|3EI7|B Chain B, Crystal Structure Of Apo-Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana (No Plp)
Length = 432
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 185 GRTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFS 226
GRT +++F S +NPT A A +L++L A G +V D+ ++
Sbjct: 197 GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYA 241
>pdb|3VA1|A Chain A, Crystal Structure Of The Mammalian Mdc1 Fha Domain
pdb|3VA1|B Chain B, Crystal Structure Of The Mammalian Mdc1 Fha Domain
pdb|3VA4|A Chain A, Crystal Structure Of The Mammalian Mdc1 Fha Domain
Complexed With Chk2 Pthr68 Peptide
pdb|3VA4|B Chain B, Crystal Structure Of The Mammalian Mdc1 Fha Domain
Complexed With Chk2 Pthr68 Peptide
Length = 132
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 71 MEPETMRRMFAGELGPDRDFFIY 93
MEP R+F+G GP+RDF +Y
Sbjct: 21 MEPIGQLRLFSGTHGPERDFPLY 43
>pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With Ll-Dap: External Aldimine Form
pdb|3EI8|B Chain B, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With Ll-Dap: External Aldimine Form
pdb|3EI9|A Chain A, Crystal Structure Of K270n Variant Of Ll-diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-glu: External Aldimine Form
pdb|3EI9|B Chain B, Crystal Structure Of K270n Variant Of Ll-diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-glu: External Aldimine Form
pdb|3EIB|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana
pdb|3EIB|B Chain B, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana
Length = 432
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 185 GRTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFS 226
GRT +++F S +NPT A A +L++L A G +V D+ ++
Sbjct: 197 GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYA 241
>pdb|2Z20|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana
pdb|2Z20|B Chain B, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana
Length = 432
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 185 GRTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFS 226
GRT +++F S +NPT A A +L++L A G +V D+ ++
Sbjct: 197 GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYA 241
>pdb|2O0R|A Chain A, The Three-Dimensional Structure Of
N-Succinyldiaminopimelate Aminotransferase From
Mycobacterium Tuberculosis
pdb|2O0R|B Chain B, The Three-Dimensional Structure Of
N-Succinyldiaminopimelate Aminotransferase From
Mycobacterium Tuberculosis
Length = 411
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 68/196 (34%), Gaps = 32/196 (16%)
Query: 120 TASGMSAISSVLMQLCSSGGHVVAARTLY---------GGTHALLTHFFPRACNITTTFV 170
T AI++ ++ L G V+ Y G H + P
Sbjct: 92 TVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFAL--- 148
Query: 171 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL---SRLAHDKGVTVVVDNTFSP 227
D + + A+ RT+ L S NPT AV + EL + +A + V+ D +
Sbjct: 149 ---DADALRRAVTP-RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEH 204
Query: 228 LVLSPAR----LGAD-------VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 276
LV AR G D + + F G I G CGPA L+ + Q
Sbjct: 205 LVFDHARHLPLAGFDGMAERTITISSAAXMFNCTGWKI--GWACGPAELIAGVRAAKQYL 262
Query: 277 LMLLGPTMNPKVAFEL 292
+ G P VA L
Sbjct: 263 SYVGGAPFQPAVALAL 278
>pdb|3FD0|A Chain A, Crystal Structure Of Putative Cystathionine Beta-Lyase
Involved In Aluminum Resistance (Np_470671.1) From
Listeria Innocua At 2.12 A Resolution
pdb|3FD0|B Chain B, Crystal Structure Of Putative Cystathionine Beta-Lyase
Involved In Aluminum Resistance (Np_470671.1) From
Listeria Innocua At 2.12 A Resolution
Length = 409
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 74/208 (35%), Gaps = 42/208 (20%)
Query: 96 HFNPTV---------LNLSRQMAALEGTEAAYCTA---SGMSAISSVLMQLCSSGGH--- 140
HFNP+ L R A++ TEAA SG AIS+VL + G
Sbjct: 47 HFNPSTGYGYDDEGRDTLERVYASVFKTEAALVRPQIISGTHAISTVLFGILRPGDELLY 106
Query: 141 -----------VVAARTLYGGTHALLTHF------FPRACNITTTFVDISDHEMVNSAIV 183
+V R+ G+ L F P N + +S N+ +
Sbjct: 107 ITGEPYDTLEEIVGIRSEGQGS---LKDFQIGYDAVPLLPNGEIDYPAVSKKISANTKXI 163
Query: 184 QGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLV--LSPARLGADV 239
+ Y + P+ + I E + + V VDN + V + P +GAD+
Sbjct: 164 GIQRSRGYAD---RPSFTIEKIKEXVTFVKNINPNIIVFVDNCYGEFVERIEPTEVGADI 220
Query: 240 VVHSISKFISGGADIIAGAVCGPANLVN 267
+ S+ GG G + G LV+
Sbjct: 221 IAGSLIXNPGGGLAKTGGYIAGRNTLVD 248
>pdb|3VBL|A Chain A, Crystal Structure Of The S84c Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
pdb|3VBL|C Chain C, Crystal Structure Of The S84c Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
pdb|3VBL|E Chain E, Crystal Structure Of The S84c Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
Length = 205
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 13/78 (16%)
Query: 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLT 156
+NP V+++ + + +C SG I S H+ A LYGG +
Sbjct: 48 YNPGVISIGNNVRIDD-----FCILSGKVTIGSY--------SHIAAYTALYGGEVGIEM 94
Query: 157 HFFPRACNITTTFVDISD 174
+ F C+ T + I D
Sbjct: 95 YDFANICSRTIVYAAIDD 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,977,313
Number of Sequences: 62578
Number of extensions: 441514
Number of successful extensions: 1183
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 55
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)